Query psy16314
Match_columns 854
No_of_seqs 369 out of 1998
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 18:13:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0188|consensus 100.0 2E-147 3E-152 1246.9 21.4 501 1-802 12-585 (895)
2 PLN02900 alanyl-tRNA synthetas 100.0 5E-140 1E-144 1260.3 23.5 510 1-803 21-613 (936)
3 COG0013 AlaS Alanyl-tRNA synth 100.0 5E-136 1E-140 1198.0 25.6 490 1-803 16-582 (879)
4 TIGR00344 alaS alanine--tRNA l 100.0 7E-135 2E-139 1211.3 22.2 498 1-802 7-574 (851)
5 PRK00252 alaS alanyl-tRNA synt 100.0 3E-131 6E-136 1183.9 21.5 485 1-803 12-568 (865)
6 PF01411 tRNA-synt_2c: tRNA sy 100.0 7E-128 2E-132 1109.1 3.8 471 1-780 7-552 (552)
7 TIGR03683 A-tRNA_syn_arch alan 100.0 6E-113 1E-117 1025.4 22.0 465 1-803 66-612 (902)
8 PRK13902 alaS alanyl-tRNA synt 100.0 1E-112 2E-117 1023.4 22.9 465 1-803 69-608 (900)
9 PRK01584 alanyl-tRNA synthetas 100.0 4E-112 9E-117 974.8 15.0 362 1-656 11-423 (594)
10 cd00673 AlaRS_core Alanyl-tRNA 100.0 4.9E-85 1.1E-89 672.6 8.6 224 1-395 9-232 (232)
11 KOG0188|consensus 100.0 4E-84 8.6E-89 732.1 13.0 366 155-850 10-388 (895)
12 PLN02900 alanyl-tRNA synthetas 100.0 1.5E-78 3.2E-83 729.2 13.1 374 155-849 19-404 (936)
13 COG0013 AlaS Alanyl-tRNA synth 100.0 6.1E-76 1.3E-80 691.2 8.1 355 155-850 14-382 (879)
14 TIGR00344 alaS alanine--tRNA l 100.0 1.2E-73 2.6E-78 684.3 12.4 362 155-849 5-379 (851)
15 PRK00252 alaS alanyl-tRNA synt 100.0 5E-73 1.1E-77 681.0 9.5 349 155-849 10-372 (865)
16 PF01411 tRNA-synt_2c: tRNA sy 100.0 9.2E-74 2E-78 660.1 -1.8 359 155-850 5-378 (552)
17 PRK01584 alanyl-tRNA synthetas 100.0 3.4E-65 7.3E-70 587.3 11.5 357 155-849 9-383 (594)
18 TIGR03683 A-tRNA_syn_arch alan 100.0 3.4E-64 7.3E-69 604.7 11.7 356 155-847 64-430 (902)
19 cd00673 AlaRS_core Alanyl-tRNA 100.0 7.9E-56 1.7E-60 456.3 4.7 212 155-487 7-232 (232)
20 PRK13902 alaS alanyl-tRNA synt 100.0 4.8E-55 1E-59 525.6 8.5 346 155-852 67-431 (900)
21 COG2872 Predicted metal-depend 99.6 1.4E-15 3E-20 160.2 7.0 102 675-803 13-114 (241)
22 PLN02961 alanine-tRNA ligase 99.4 6.7E-14 1.5E-18 146.3 5.8 92 699-801 2-99 (223)
23 KOG2105|consensus 95.1 0.018 3.9E-07 62.7 3.8 84 700-803 44-127 (415)
24 COG0752 GlyQ Glycyl-tRNA synth 89.4 1.2 2.5E-05 48.1 7.5 108 474-597 162-281 (298)
25 cd00733 GlyRS_alpha_core Class 83.5 2.7 5.8E-05 45.7 6.5 22 473-494 156-177 (279)
26 TIGR00388 glyQ glycyl-tRNA syn 82.8 3.2 6.9E-05 45.4 6.8 22 473-494 157-178 (293)
27 PRK09348 glyQ glycyl-tRNA synt 79.9 5 0.00011 43.7 7.0 107 472-596 159-275 (283)
28 PF02091 tRNA-synt_2e: Glycyl- 76.5 1.1 2.5E-05 48.6 1.1 23 472-494 154-176 (284)
29 PRK09348 glyQ glycyl-tRNA synt 52.8 6.6 0.00014 42.9 1.2 23 379-401 158-180 (283)
30 TIGR00388 glyQ glycyl-tRNA syn 50.5 7.1 0.00015 42.8 1.0 23 379-401 155-177 (293)
31 cd00733 GlyRS_alpha_core Class 50.3 7.6 0.00016 42.3 1.2 23 379-401 154-176 (279)
32 PF02091 tRNA-synt_2e: Glycyl- 48.1 7.5 0.00016 42.6 0.7 23 379-401 153-175 (284)
33 PRK00488 pheS phenylalanyl-tRN 41.6 18 0.0004 41.1 2.6 15 382-396 309-323 (339)
34 PRK14908 glycyl-tRNA synthetas 41.1 48 0.001 42.8 6.2 106 476-599 164-279 (1000)
35 COG0752 GlyQ Glycyl-tRNA synth 40.3 13 0.00028 40.5 1.0 64 382-453 162-235 (298)
36 PF14578 GTP_EFTU_D4: Elongati 29.2 82 0.0018 28.9 4.2 31 678-708 41-71 (81)
37 COG0016 PheS Phenylalanyl-tRNA 26.1 46 0.001 37.9 2.5 16 381-396 305-320 (335)
No 1
>KOG0188|consensus
Probab=100.00 E-value=1.6e-147 Score=1246.91 Aligned_cols=501 Identities=57% Similarity=0.902 Sum_probs=435.8
Q ss_pred CCccccCCCceEeCCCCCCCCCCCcceeeecccccccccccCCcCCCCcccccccccccccceecCCCccCccCcCCCCC
Q psy16314 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVY 80 (854)
Q Consensus 1 ~~~f~~~~~h~~~~s~~~~p~~d~~llf~~agm~~~k~~~~g~~~~~~~~~~~~~~~~~q~c~r~~g~~~d~~~vg~~~~ 80 (854)
||||+ +|.|++||||||||.+||||||+|||||||||+|||+ |++++||+|+||||||||||||||+||||.|
T Consensus 12 ldfF~-~k~H~~V~SSsViP~dDpTLLFaNAGMNQFKpifLgt------~a~lkRa~NsQKCIRAGGKHNDLdDVGkD~y 84 (895)
T KOG0188|consen 12 LDFFK-SKHHKIVHSSSVIPFDDPTLLFANAGMNQFKPIFLGT------MAKLKRAANSQKCIRAGGKHNDLDDVGKDFY 84 (895)
T ss_pred HHHHH-hcCceEeccCCcccCCCCeeEEeccchhhcchhhhhc------hhhhHhhhhhhhHHhccCCcCChhHhchhcc
Confidence 68999 5779999999999999999999999999999999998 6789999999999999999999999999999
Q ss_pred cceeeeecccccccccccccccccCCCCCCchhhhhHHHHhchhhhccCCCcCCCCccccccccchhhhhcccccccccc
Q psy16314 81 HHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYF 160 (854)
Q Consensus 81 h~t~femlg~~s~g~y~k~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~fld~f 160 (854)
||||||||||||||||||+||| .||| ||||+ .|
T Consensus 85 HhTfFEMlGNWSFGdYfK~Eac---------~~Aw---elLt~-----------------------------------vy 117 (895)
T KOG0188|consen 85 HHTFFEMLGNWSFGDYFKEEAC---------AWAW---ELLTF-----------------------------------VY 117 (895)
T ss_pred ccCchhhcCCCCcchHHHHHHH---------HHHH---HHHHH-----------------------------------hh
Confidence 9999999999999999999999 9999 99999 78
Q ss_pred ccCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccchhhhccc
Q psy16314 161 KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFE 240 (854)
Q Consensus 161 kk~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~wH~Tffe 240 (854)
+||++|+ |+|||.| ++..+++ .|.|++++| ..
T Consensus 118 -----------gi~~dRL-----------YVtYF~G--de~~Gl~--------------------~D~E~r~iW----~~ 149 (895)
T KOG0188|consen 118 -----------GIPTDRL-----------YVTYFGG--DEKLGLE--------------------PDLECREIW----NE 149 (895)
T ss_pred -----------cCCCceE-----------EEEEecC--ccccCCC--------------------CCcHHHHHH----HH
Confidence 9999999 9999999 8988886 799999999 77
Q ss_pred c-cCCCcccCCCCCcceeecCcccCCCCCccccccccCCCCCCccccCCCchhhhhcCCcchhhhhhccccccccccccC
Q psy16314 241 I-LPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMG 319 (854)
Q Consensus 241 M-lgn~~i~~f~~~DnFWe~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~~~~~~i~~~~~~~~~kdNfW~~G 319 (854)
. +|.+||++||.+|||||||++|||||||||||||+|
T Consensus 150 ~Gvp~srILp~~~kDNFWEMGdtGPCGPCtEIHyDriG------------------------------------------ 187 (895)
T KOG0188|consen 150 LGVPDSRILPFGMKDNFWEMGDTGPCGPCTEIHYDRIG------------------------------------------ 187 (895)
T ss_pred cCCChhhccCCccccchhhhcCCCCCCcchhhhhhhhc------------------------------------------
Confidence 7 899999998888888888877777777777666664
Q ss_pred CCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCCCCCCchhhhHHhhhCCCCCc
Q psy16314 320 ETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVIQDKRSNY 399 (854)
Q Consensus 320 ~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~IDTGmGlERl~~ilqg~~SnY 399 (854)
|++++.++|.|||+++||||+|||||||++||++.|||++|||||||||||++|||++.|||
T Consensus 188 ------------------~r~a~~LVN~ddp~v~EiWNlVFiq~NRe~dGsL~pLp~khIDTGMGfERLvsVlQnk~SNY 249 (895)
T KOG0188|consen 188 ------------------GRDAVKLVNHDDPDVLEIWNIVFIQYNREADGSLKPLPKKHIDTGMGFERLVSVLQNKTSNY 249 (895)
T ss_pred ------------------CcchHHHhcCCCcCceeeeeeeeeeeccccCCccccCcccccccccCHHHHHHHHhcccccc
Confidence 56778899999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCCCCCCcCCccccccCCCHHH
Q psy16314 400 DTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPLPKKHIDCGMGFER 479 (854)
Q Consensus 400 dtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~~~l~~L~~~~iDtGmGlER 479 (854)
|||+|.|||++||+.++.+ |+| + +
T Consensus 250 DTDlFtPif~aiq~~~~~~-YtG---~-d--------------------------------------------------- 273 (895)
T KOG0188|consen 250 DTDLFTPIFEAIQEGTGAR-YTG---E-D--------------------------------------------------- 273 (895)
T ss_pred cchhhHHHHHHHHHhcCCC-ccC---C-c---------------------------------------------------
Confidence 9999999999999999987 865 1 1
Q ss_pred HHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCCCCCCCCCCcccccchhhhH
Q psy16314 480 LVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYR 559 (854)
Q Consensus 480 L~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R 559 (854)
...+|+|||
T Consensus 274 -----------------------------------------------------------------------~d~~D~AyR 282 (895)
T KOG0188|consen 274 -----------------------------------------------------------------------ADGIDTAYR 282 (895)
T ss_pred -----------------------------------------------------------------------cccchhhHH
Confidence 123579999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHHHH-------------------
Q psy16314 560 VLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL------------------- 620 (854)
Q Consensus 560 vIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~~~------------------- 620 (854)
|+|||+|+++++||||++|+|+|||||||||||||+|+++++||+++.||++|||+||+.|
T Consensus 283 VvADH~RtlTvalsDG~~Pdn~GrgyvLRRILRRavrya~e~l~~~~g~~~~LVpvvv~~lgd~fPEl~~~~~~v~diin 362 (895)
T KOG0188|consen 283 VVADHARTLTVALSDGGVPDNTGRGYVLRRILRRAVRYAHEKLNAPPGFFSTLVPVVVETLGDAFPELKRDPQHVIDIIN 362 (895)
T ss_pred HHHHHhhhhheeeecCCCCCCCCChhHHHHHHHHHHHHHHHHhCCCcchhhhhhHHHHHHHhhhchhhhcCHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------HHhcC--------------------CCCccccccccCHHHHHHH-HHcCCCCCCCCCccc----c-------
Q psy16314 621 --------LLSQG--------------------KGATIEDTIGLDIHSITDL-QTRGVPPTDDSPKYR----Y------- 660 (854)
Q Consensus 621 --------~~~~~--------------------~~~~l~dt~g~~~~~~~~l-~~~~~~~t~d~~~y~----~------- 660 (854)
+++.+ ..+.||||||||+++++.| +++|+.+|.++|+-. +
T Consensus 363 eEE~~F~ktl~rg~~~f~r~~~~~~~s~tipGd~~w~LydTyGfPvdlt~lmAee~gl~iD~~~fE~ar~~A~~~Sk~~~ 442 (895)
T KOG0188|consen 363 EEEAQFLKTLDRGRKLFDRVARELGSSKTIPGDVAWRLYDTYGFPVDLTELMAEEKGLKIDETGFEAARQEAQEKSKGAG 442 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchHHHHHHHhhcCCcHHHHHHHHHHhCCccCchhHHHHHHHHHHHHhccC
Confidence 11111 1356999999999999986 668998887654211 0
Q ss_pred --C-----CC----CCCCCC-Ccc-ccccceeEEEEEeeCCeeeeeccCCCeeEEEeecccccccCCCccccceEEEccC
Q psy16314 661 --T-----PT----QPDTAD-GAY-EFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 727 (854)
Q Consensus 661 --~-----~~----~~~t~F-~GY-e~~~~~a~Vlai~~dg~~V~~~~~G~~~~vvLD~TpFYaEsGGQvgDtG~I~~~~ 727 (854)
. .. .++|.. -.| ++..++++|+++..++.+|++++.|++++||||+|+||||+|||++|+|.|+..+
T Consensus 443 ~~~~~i~ldvl~el~p~TdDs~KY~~~~~~~~~il~l~~e~~~v~~~~~g~~~givldktnFYaEqGGQ~~D~G~lv~~~ 522 (895)
T KOG0188|consen 443 GGKLSIDLDVLSELVPPTDDSFKYNEFGVCKTRILALYREDQFVESIPKGQECGIVLDKTNFYAEQGGQIYDTGKLVIDG 522 (895)
T ss_pred CCCCcccHHHHHhhCCCCCCccccccCccchhhhhhhhcCCceeeecCCCceEEEEeecceeehhcCCcccccceEEEec
Confidence 0 00 123322 267 7788999999999999999999999999999999999999999999999999877
Q ss_pred cceeeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhhhhhHhhhhhhhcCCCCccchhhHHHHH
Q psy16314 728 DELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVV 802 (854)
Q Consensus 728 ~~~~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~IRRa~R~~~~~Lg~~~~~L~~LV~~~i 802 (854)
.+..| +.|..+ ..++.++|..-- +. .. ..|-.+-+.+|-.+|...|+-|+..|+|+-.+..++
T Consensus 523 ~~~~~-----fnV~~~---~~gg~vvh~g~l--~~-~l-~vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l 585 (895)
T KOG0188|consen 523 DEDFV-----FNVKRV---QVGGYVVHIGVL--EG-DL-SVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVL 585 (895)
T ss_pred Cccce-----eehhhc---ccCCEEEEEeee--cc-cc-ccchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhc
Confidence 65434 223444 447777776432 11 11 368889999999999999999999998887776665
No 2
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=4.5e-140 Score=1260.25 Aligned_cols=510 Identities=51% Similarity=0.852 Sum_probs=433.1
Q ss_pred CCccccCCCceEeCCCCCCCCCCCcceeeecccccccccccCCcCCCCcccccccccccccceecCCCccCccCcCCCCC
Q psy16314 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVY 80 (854)
Q Consensus 1 ~~~f~~~~~h~~~~s~~~~p~~d~~llf~~agm~~~k~~~~g~~~~~~~~~~~~~~~~~q~c~r~~g~~~d~~~vg~~~~ 80 (854)
|+||+ +|||++||||||||.|||||||||||||||||||+|+++|++++++++|+||+|||||+|||||||||||+|+|
T Consensus 21 l~FF~-~~gH~~v~s~slvp~~dptllftnAGm~~Fk~~f~G~~~p~~~~~~~~R~~~~QkCiR~gGKHnDlenVG~t~r 99 (936)
T PLN02900 21 LSFFE-SKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQKCIRAGGKHNDLDDVGKDTY 99 (936)
T ss_pred HHHHH-hCCCEEeCCCCcCCCCCCCeeeeecchhhhhhhhcCCCCCCCCCCCCCceeeecccccCCCCCCCHhhccCCCC
Confidence 68999 79999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred cceeeeecccccccccccccccccCCCCCCchhhhhHHHHhchhhhccCCCcCCCCccccccccchhhhhcccccccccc
Q psy16314 81 HHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYF 160 (854)
Q Consensus 81 h~t~femlg~~s~g~y~k~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~fld~f 160 (854)
||||||||||||||||||+||| .||| ||||+ .|
T Consensus 100 HhTfFEMlGnfSfgdYfK~eaI---------~~aw---e~lT~-----------------------------------~l 132 (936)
T PLN02900 100 HHTFFEMLGNWSFGDYFKKEAI---------GWAW---ELLTK-----------------------------------VY 132 (936)
T ss_pred chHHHHhhhccchhhhhHHHHH---------HHHH---HHHHH-----------------------------------hc
Confidence 9999999999999999999999 9999 99999 67
Q ss_pred ccCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccchhhhccc
Q psy16314 161 KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFE 240 (854)
Q Consensus 161 kk~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~wH~Tffe 240 (854)
.||++++ |+|||.+ |... + .|.|++++|+.
T Consensus 133 -----------~i~~~~l-----------~vTv~~~--D~~~-~---------------------~d~Ea~~iW~~---- 162 (936)
T PLN02900 133 -----------GLPADRL-----------YATYFGG--DEKQ-A---------------------PDDEARAIWLD---- 162 (936)
T ss_pred -----------CCCHHHE-----------EEEEeCC--CCCc-C---------------------CCHHHHHHHHH----
Confidence 9999999 9999987 4432 1 48899999954
Q ss_pred ccCCCcccCCCCCcceeecCcccCCCCCccccccccCCCCCCccccCCCchhhhhcCCcchhhhhhccccccccccccCC
Q psy16314 241 ILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGE 320 (854)
Q Consensus 241 Mlgn~~i~~f~~~DnFWe~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~~~~~~i~~~~~~~~~kdNfW~~G~ 320 (854)
.++.+||++++.+||||+||++||||||||||||++++
T Consensus 163 ~~~~~rI~~~~~~dNfW~~G~tGpcGPcsEi~yD~g~~------------------------------------------ 200 (936)
T PLN02900 163 YLPEERVLPFGCKDNFWEMGDTGPCGPCSEIHYDRIGE------------------------------------------ 200 (936)
T ss_pred hCCHHHeecCCcccCCccCCCCcCCCCCeEEEEecCCc------------------------------------------
Confidence 39999999998888888888888888888888887641
Q ss_pred CCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCCCCCCchhhhHHhhhCCCCCcc
Q psy16314 321 TGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVIQDKRSNYD 400 (854)
Q Consensus 321 ~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~IDTGmGlERl~~ilqg~~SnYd 400 (854)
..+..+++.+++||+||||+|||||||+.+|+++|||++|||||||||||++|+||++||||
T Consensus 201 ------------------~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~~snyd 262 (936)
T PLN02900 201 ------------------RDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPAKHVDTGMGLERLASILQNKPSNYD 262 (936)
T ss_pred ------------------cCccccCCCCCCCEEEEeeeeeeeeeecCCCceeeCCCCeeecCcCHHHHHHHHcCCCCcch
Confidence 00111234578899999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCCCCCCcCCccccccCCCHHHH
Q psy16314 401 TDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPLPKKHIDCGMGFERL 480 (854)
Q Consensus 401 tDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~~~l~~L~~~~iDtGmGlERL 480 (854)
||+|.|||+.|++++|.++|+|.....+
T Consensus 263 tDlf~pii~~i~~~~~~~~~~~~~y~~~---------------------------------------------------- 290 (936)
T PLN02900 263 TDLFMPIFDAIQEATGARPYAGKVGAED---------------------------------------------------- 290 (936)
T ss_pred hhhHHHHHHHHHHHhCCCcccccccccc----------------------------------------------------
Confidence 9999999999999998777754211000
Q ss_pred HHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCCCCCCCCCCcccccchhhhHH
Q psy16314 481 VSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRV 560 (854)
Q Consensus 481 ~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Rv 560 (854)
....+.||||
T Consensus 291 ----------------------------------------------------------------------~~~~~~a~rv 300 (936)
T PLN02900 291 ----------------------------------------------------------------------DDRVDMAYRV 300 (936)
T ss_pred ----------------------------------------------------------------------ccccceeeee
Confidence 0012479999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHHHH--------------------
Q psy16314 561 LADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL-------------------- 620 (854)
Q Consensus 561 IaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~~~-------------------- 620 (854)
||||+||++|+|+||++|||+|||||||||||||+|+|+.+||++.+||++||+.|++.|
T Consensus 301 iaDH~R~~~f~i~DGv~PsN~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~ 380 (936)
T PLN02900 301 VADHIRTLSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVELSGDVFPEVKKNEKRITEIIAE 380 (936)
T ss_pred ehhhHHHHHHHHhcCCccCCCCccHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999996448999999999999999999
Q ss_pred ------------------HHh--c--C-C------CCccccccccCHHHHHHH-HHcCCCCCCCCCc-------------
Q psy16314 621 ------------------LLS--Q--G-K------GATIEDTIGLDIHSITDL-QTRGVPPTDDSPK------------- 657 (854)
Q Consensus 621 ------------------~~~--~--~-~------~~~l~dt~g~~~~~~~~l-~~~~~~~t~d~~~------------- 657 (854)
.++ + + + +|+||||||||+|+|+++ +++|+.+|.++|.
T Consensus 381 EE~~F~~tl~~G~~~l~~~i~~~~~~~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~F~~~~~~~~~~s~~~ 460 (936)
T PLN02900 381 EELSFGKTLEKGIEKFKKALAAAKANGGPVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAA 460 (936)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCHHHHHHHHhccCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHHhh
Confidence 000 1 1 1 467999999999999985 6789888654321
Q ss_pred --------c--c---cCC---C--CCCCCCCcccccc-ceeEEEEEeeCCeeeeeccCCCeeEEEeecccccccCCCccc
Q psy16314 658 --------Y--R---YTP---T--QPDTADGAYEFEP-CEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIY 718 (854)
Q Consensus 658 --------y--~---~~~---~--~~~t~F~GYe~~~-~~a~Vlai~~dg~~V~~~~~G~~~~vvLD~TpFYaEsGGQvg 718 (854)
. . +.. . ...|+|.||+.++ ++|+|++|+.+++.|+++++|+.+.||||+||||||+|||++
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~f~gY~~~~~~~~~v~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~ 540 (936)
T PLN02900 461 HLKAGGGAIELAAEATSWLQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIG 540 (936)
T ss_pred hhccccccccccHHHHHHHHhccCCCCCcccccccCCccceEEEEEEECCceeeeccCCCeEEEEEeCCCCCCCCCCCCC
Confidence 0 0 000 0 0357899999999 999999999999999999999999999999999999999999
Q ss_pred cceEEEccCc-ceeeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhhhhhHhhhhhhhcCCCCccchhh
Q psy16314 719 DEGFMIGVND-ELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSL 797 (854)
Q Consensus 719 DtG~I~~~~~-~~~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~IRRa~R~~~~~Lg~~~~~L~~L 797 (854)
|+|+|..+++ .+.| .+|++ . ++.++|+.... .+. ...|-.++..|||.+|+.+|+.|+..|+|+.+
T Consensus 541 D~G~I~~~~~~~~~V--------~dv~k-~-~g~i~H~~~~~--~g~-l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aA 607 (936)
T PLN02900 541 DTGVLEGSGGAVVEV--------SDVQK-A-GGFVLHIGTVT--EGS-VSVGDAVTCKVDYDRRRRIAPNHTATHLLNSA 607 (936)
T ss_pred CEEEEecCCCCEEEE--------EEEEE-E-CCEEEEEEEec--cCC-CCCCCEEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 9999987665 4554 67777 3 45566653111 111 13577799999999999999999999999988
Q ss_pred HHHHHH
Q psy16314 798 VNTVVD 803 (854)
Q Consensus 798 V~~~i~ 803 (854)
+..+..
T Consensus 608 Lr~vlG 613 (936)
T PLN02900 608 LKEVLG 613 (936)
T ss_pred HHHHcC
Confidence 877653
No 3
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-136 Score=1197.96 Aligned_cols=490 Identities=41% Similarity=0.690 Sum_probs=424.1
Q ss_pred CCccccCCCceEeCCCCCCCCCCCcceeeecccccccccccCCcCCCCcccccccccccccceecCCCccCccCcCCCCC
Q psy16314 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVY 80 (854)
Q Consensus 1 ~~~f~~~~~h~~~~s~~~~p~~d~~llf~~agm~~~k~~~~g~~~~~~~~~~~~~~~~~q~c~r~~g~~~d~~~vg~~~~ 80 (854)
|+||+ +|||++|||+||||.||||||||||||+||||||+|.++|++ .|+||+|||||+ |||||||+|+|
T Consensus 16 L~FF~-~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~f~g~v~p~~-----~r~~~sQkcIR~----NDieNVG~T~R 85 (879)
T COG0013 16 LDFFE-KKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPA-----NRAVTSQKCIRT----NDIDNVGYTAR 85 (879)
T ss_pred HHHHH-HCCCeecCCCCcCCCCCCCeEEeecccccchhhhcCCCCCCC-----CCeecccccccc----CchhhcCcccc
Confidence 68999 799999999999999999999999999999999999977764 599999999999 89999999999
Q ss_pred cceeeeecccccccccccccccccCCCCCCchhhhhHHHHhchhhhccCCCcCCCCccccccccchhhhhcccccccccc
Q psy16314 81 HHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYF 160 (854)
Q Consensus 81 h~t~femlg~~s~g~y~k~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~fld~f 160 (854)
||||||||||||||||||+||| .||| ||||+ +|
T Consensus 86 HhTfFEMLGNfSFGdYFKeeAI---------~~Aw---EflT~-----------------------------------~l 118 (879)
T COG0013 86 HHTFFEMLGNFSFGDYFKEEAI---------EFAW---EFLTK-----------------------------------VL 118 (879)
T ss_pred chhHHHhhhcCchhHHHHHHHH---------HHHH---HHHHh-----------------------------------hc
Confidence 9999999999999999999999 9999 99998 88
Q ss_pred ccCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccchhhhccc
Q psy16314 161 KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFE 240 (854)
Q Consensus 161 kk~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~wH~Tffe 240 (854)
.||++++ |+|||.. |++++.+| .+
T Consensus 119 -----------gl~~ekL-----------~vtvy~~------------------------------Ddea~~~W----~~ 142 (879)
T COG0013 119 -----------GLPKEKL-----------YVTVYED------------------------------DDEAYNEW----EK 142 (879)
T ss_pred -----------CCCHHHE-----------EEEEecC------------------------------chHHHHHH----Hh
Confidence 9999999 9999996 88999999 55
Q ss_pred c--cCCCcccCCCCCcceeecCcccCCCCCccccccccCCCCCCccccCCCchhhhhcCCcchhhhhhcccccccccccc
Q psy16314 241 I--LPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEM 318 (854)
Q Consensus 241 M--lgn~~i~~f~~~DnFWe~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~~~~~~i~~~~~~~~~kdNfW~~ 318 (854)
. +|.+||++++..||||+||+ |||||||||+||++. .||.
T Consensus 143 ~~gip~~rIir~~~~dNfW~~G~-GPcGPcsEI~yD~G~------------------------------------~~~~- 184 (879)
T COG0013 143 IIGIPPERIIRIGASDNFWEMGD-GPCGPCSEIFYDRGE------------------------------------EIGG- 184 (879)
T ss_pred hcCCCHHHeeecCcCCCCCCCCC-cCCCCceEEEEcCCc------------------------------------ccCC-
Confidence 5 88999999999999999998 999999999999875 0110
Q ss_pred CCCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccC-CCCCccCCCCCCCCCCCchhhhHHhhhCCCC
Q psy16314 319 GETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRE-TDGSLKPLPKKHIDCGMGFERLVSVIQDKRS 397 (854)
Q Consensus 319 G~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~-~dG~l~pLp~k~IDTGmGlERl~~ilqg~~S 397 (854)
..| .+++.+++||+||||+|||||||+ .+|++.|||+|||||||||||++||+||++|
T Consensus 185 --~~~-------------------~~~~~d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~IDTGmGLERi~~vlQ~~~t 243 (879)
T COG0013 185 --GPP-------------------GSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNIDTGMGLERIAAVLQGVPT 243 (879)
T ss_pred --CCC-------------------CCcCCCCCceEEEeeeeehhhccCCCCCCcccCCCCCcccCccHHHHHHHHcCCCc
Confidence 011 123578999999999999999999 7999999999999999999999999999999
Q ss_pred CccccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCCCCCCcCCccccccCCCH
Q psy16314 398 NYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPLPKKHIDCGMGF 477 (854)
Q Consensus 398 nYdtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~~~l~~L~~~~iDtGmGl 477 (854)
|||||+|.||++.+++++|.. |.. +
T Consensus 244 nyd~dlf~~ii~~~e~~~g~~-~~~-----~------------------------------------------------- 268 (879)
T COG0013 244 NYDTDLFRPIIKAIEKLTGKK-YGE-----D------------------------------------------------- 268 (879)
T ss_pred chhhhhhHHHHHHHHHHhCCc-CCc-----c-------------------------------------------------
Confidence 999999999999999988763 210 0
Q ss_pred HHHHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCCCCCCCCCCcccccchhh
Q psy16314 478 ERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMA 557 (854)
Q Consensus 478 ERL~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 557 (854)
...++.+
T Consensus 269 -------------------------------------------------------------------------~~~~~~s 275 (879)
T COG0013 269 -------------------------------------------------------------------------EEDPDVS 275 (879)
T ss_pred -------------------------------------------------------------------------cccccee
Confidence 0011479
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHHHH-----------------
Q psy16314 558 YRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL----------------- 620 (854)
Q Consensus 558 ~RvIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~~~----------------- 620 (854)
+||||||+||++|||+|||+|||+|||||||||||||+||| ++||++.+||++||+++++.|
T Consensus 276 ~rVIADH~Rs~~f~iaDGv~PSNegrGYvlRriiRRa~R~~-~~LG~~~~fl~~LV~~~~~~m~~~ypel~~~~~~I~~v 354 (879)
T COG0013 276 FRVIADHIRSLAFMIADGVLPSNEGRGYVLRRIIRRALRHG-KLLGIKEPFLYKLVDTVIDEMGDAYPELKEKEDFIKEV 354 (879)
T ss_pred EEEehhHHHHHHHHHhCCCCcCCCCccHHHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 589999999999999999999
Q ss_pred ----------HH-----------h---c------CCCCccccccccCHHHHHHH-HHcCCCCCCCCCccc----------
Q psy16314 621 ----------LL-----------S---Q------GKGATIEDTIGLDIHSITDL-QTRGVPPTDDSPKYR---------- 659 (854)
Q Consensus 621 ----------~~-----------~---~------~~~~~l~dt~g~~~~~~~~l-~~~~~~~t~d~~~y~---------- 659 (854)
++ + + ...|+||||||||+|+++++ +++|++++..+|.+.
T Consensus 355 l~~EEe~F~~TL~~G~~l~~~~~~~~~~~~~l~ge~afkLYDTyGfP~eLt~eia~e~g~~VD~~~f~~~m~~qr~~ar~ 434 (879)
T COG0013 355 LKLEEERFAKTLERGLKLLEKELAKLKKSKTLDGEDAFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERARA 434 (879)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCccChHHheeehhcCCCCHHHHHHHHHHcCCeeccccHHHHHHHHHHHhhh
Confidence 00 0 0 12588999999999999995 779999887654321
Q ss_pred ---------cC------CCCCCCCCCccccccceeEEEEEeeCCeeeeeccCCCeeEEEeecccccccCCCccccceEEE
Q psy16314 660 ---------YT------PTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMI 724 (854)
Q Consensus 660 ---------~~------~~~~~t~F~GYe~~~~~a~Vlai~~dg~~V~~~~~G~~~~vvLD~TpFYaEsGGQvgDtG~I~ 724 (854)
.. .....|+|.||+.++++++|++|+.+++.|+++++|++++||||+||||||||||+||+|+|.
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~tef~gY~~~~~~~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~ 514 (879)
T COG0013 435 SAGSGEGAKESEDLELIDKLPETEFLGYDDLEMEFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIF 514 (879)
T ss_pred ccccccccchhhhhhhhccCCCceeeecccccceEEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCceEEEE
Confidence 00 012469999999999999999999988779999999999999999999999999999999999
Q ss_pred ccC-cceeeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhhhhhHhhhhhhhcCCCCccchhhHHHHHH
Q psy16314 725 GVN-DELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVD 803 (854)
Q Consensus 725 ~~~-~~~~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~IRRa~R~~~~~Lg~~~~~L~~LV~~~i~ 803 (854)
.++ +.+. |+||+|.+ +++++|........ ...|-.++..|+|.+|+..|+-|+..|+|......++.
T Consensus 515 ~~~~~~~~--------V~dvqK~~-~~~~vH~~~~~~G~---l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG 582 (879)
T COG0013 515 GDGGGRFE--------VTDVQKVG-NGVIVHKGKVESGE---LKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLG 582 (879)
T ss_pred ecCCcEEE--------EEEEEEcC-CceEEEEEeeccCc---cCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhC
Confidence 875 4444 48999865 35666765433221 24788999999999999999999999987777766554
No 4
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=7.2e-135 Score=1211.26 Aligned_cols=498 Identities=39% Similarity=0.673 Sum_probs=421.4
Q ss_pred CCccccCCCceEeCCCCCCCCCCCcceeeecccccccccccCCcCCCCcccccccccccccceecCCCccCccCcCCCCC
Q psy16314 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVY 80 (854)
Q Consensus 1 ~~~f~~~~~h~~~~s~~~~p~~d~~llf~~agm~~~k~~~~g~~~~~~~~~~~~~~~~~q~c~r~~g~~~d~~~vg~~~~ 80 (854)
|+||+ +|||++||||||||.+||||||||||||||||||+|+++|+ ++|+||||||||+ |||||||+|+|
T Consensus 7 l~fF~-~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~-----~~r~~~~QkCiR~----nDld~VG~t~r 76 (851)
T TIGR00344 7 LDFFK-EKGHQVIPSASLVPRNDPTLLLTNAGMAQFKPIFTGIVKPP-----SNRLVNAQPCIRL----NDIENVGRTAR 76 (851)
T ss_pred HHHHH-hCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----cchhhhcCCCc
Confidence 58999 79999999999999999999999999999999999999885 5899999999999 89999999999
Q ss_pred cceeeeecccccccccccccccccCCCCCCchhhhhHHHHhchhhhccCCCcCCCCccccccccchhhhhcccccccccc
Q psy16314 81 HHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYF 160 (854)
Q Consensus 81 h~t~femlg~~s~g~y~k~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~fld~f 160 (854)
||||||||||||||||||+||| .||| ||||+ .|
T Consensus 77 HhTfFEMlGnfSFgdYfK~eai---------~~aw---e~lT~-----------------------------------~~ 109 (851)
T TIGR00344 77 HHTFFEMLGNFSFGDYFKEEAI---------AFAW---ELLTS-----------------------------------VL 109 (851)
T ss_pred chhhHHhhcccchhhhhHHHHH---------HHHH---HHHhh-----------------------------------hc
Confidence 9999999999999999999999 9999 99999 68
Q ss_pred ccCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccchhhhccc
Q psy16314 161 KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFE 240 (854)
Q Consensus 161 kk~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~wH~Tffe 240 (854)
.||++++ |+|||.+ |+|++++|+. +
T Consensus 110 -----------~i~~~rl-----------~vTv~~~------------------------------D~ea~~iW~~-~-- 134 (851)
T TIGR00344 110 -----------GLDKERL-----------YVTVYED------------------------------DEEAYEIWEK-H-- 134 (851)
T ss_pred -----------CCChHHE-----------EEEEcCC------------------------------CHHHHHHHHh-c--
Confidence 9999999 9999986 8899999965 1
Q ss_pred ccCCCcccCCCCCcceeecCcccCCCCCccccccccCCCCCCccccCCCchhhhhcCCcchhhhhhccccccccccccCC
Q psy16314 241 ILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGE 320 (854)
Q Consensus 241 Mlgn~~i~~f~~~DnFWe~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~~~~~~i~~~~~~~~~kdNfW~~G~ 320 (854)
-++.+||++++.+||||+||+ ||||||||||||++.. .|
T Consensus 135 g~~~~~i~~~~~~dNfW~~G~-GpcGPcsEi~yD~g~~---------------------------------------~~- 173 (851)
T TIGR00344 135 GIPAERIIRCGDKDNFWDMGD-GPCGPCTEIYYDRGEF---------------------------------------VG- 173 (851)
T ss_pred CCCHHHcccCCccCCcCCCCC-cCCccCeEEEEecCcc---------------------------------------cC-
Confidence 278899999988899999998 8999999998887540 00
Q ss_pred CCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCCCCCCchhhhHHhhhCCCCCcc
Q psy16314 321 TGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVIQDKRSNYD 400 (854)
Q Consensus 321 ~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~IDTGmGlERl~~ilqg~~SnYd 400 (854)
|+.+..++|.+++||+||||+|||||||++||+++|||++|||||||||||++|+||++||||
T Consensus 174 -----------------~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~~snyd 236 (851)
T TIGR00344 174 -----------------GKPGEPEFFEENDRYVEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGLERFVAVLQGVPTNYD 236 (851)
T ss_pred -----------------CCCCcccccCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeecCcCHHHHHHHHcCCCCcch
Confidence 111233456788999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCCCCCCcCCccccccCCCHHHH
Q psy16314 401 TDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPLPKKHIDCGMGFERL 480 (854)
Q Consensus 401 tDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~~~l~~L~~~~iDtGmGlERL 480 (854)
||+|.|||+.|++++|++++.+..+..
T Consensus 237 tD~f~~ii~~i~~~~g~~y~~~~~~~~----------------------------------------------------- 263 (851)
T TIGR00344 237 TDIFLPLIEKIEEITGVKYDSNNAGIM----------------------------------------------------- 263 (851)
T ss_pred hhhHHHHHHHHHHHhCCCCCcCccccc-----------------------------------------------------
Confidence 999999999999999975432110000
Q ss_pred HHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCCCCCCCCCCcccccchhhhHH
Q psy16314 481 VSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRV 560 (854)
Q Consensus 481 ~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Rv 560 (854)
|.+ ....+.+|||
T Consensus 264 ------------------------------d~~-------------------------------------~~~~~~~~rv 276 (851)
T TIGR00344 264 ------------------------------DEK-------------------------------------RVEDLRSLRV 276 (851)
T ss_pred ------------------------------ccc-------------------------------------ccccchheee
Confidence 000 0012379999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHHHH--------------------
Q psy16314 561 LADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL-------------------- 620 (854)
Q Consensus 561 IaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~~~-------------------- 620 (854)
||||+||++|||+||++|||+|||||||||||||+|+| ++||++.+||++||++|++.|
T Consensus 277 iaDH~R~~~f~i~DGv~PsN~grgYvlRrilRRa~r~~-~~lg~~~~fl~~lv~~~~~~m~~~ypel~~~~~~i~~ii~~ 355 (851)
T TIGR00344 277 IADHTRALAFMLADGVVPSNEGRGYVLRRLIRRALRHG-KKLGLKEAFLYKLVPTLIEVLGDYYPELKEKQEFVEQILEL 355 (851)
T ss_pred ehhhhhhhhhhhccCcccCCCCCchhHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhChHhHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 589999999999999999999
Q ss_pred ------------------HHh--cC------CCCccccccccCHHHHHHH-HHcCCCCCCCCCc----------------
Q psy16314 621 ------------------LLS--QG------KGATIEDTIGLDIHSITDL-QTRGVPPTDDSPK---------------- 657 (854)
Q Consensus 621 ------------------~~~--~~------~~~~l~dt~g~~~~~~~~l-~~~~~~~t~d~~~---------------- 657 (854)
+++ .. .+|+||||||||+|+++++ +++|+.+|.++|.
T Consensus 356 Ee~~f~~tl~~G~~~l~~~~~~~~~~~i~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~F~~~~~~~~~~sr~~~~~ 435 (851)
T TIGR00344 356 EEERFAKTLERGLRLFEKLLKKLGKKELDGEDAFKLYDTYGFPVELTKEIAEERGLTVDIPGFETLMAEQRERSKAASQT 435 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhhhhhc
Confidence 000 01 1478999999999999985 7789988765431
Q ss_pred ----cccCC--C-CCCCCCCccccccceeEEEEEeeCCeeeeeccCCCeeEEEeecccccccCCCccccceEEEccCcce
Q psy16314 658 ----YRYTP--T-QPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDEL 730 (854)
Q Consensus 658 ----y~~~~--~-~~~t~F~GYe~~~~~a~Vlai~~dg~~V~~~~~G~~~~vvLD~TpFYaEsGGQvgDtG~I~~~~~~~ 730 (854)
..+.. . ...|+|.+|+..+++|+|+++..+++.|+++.+|+.+.||||+|||||||||||+|+|+|..+++.+
T Consensus 436 ~~~~~~~~~~~~~~~~t~~l~Y~~~~~~a~V~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~ 515 (851)
T TIGR00344 436 ISFELQEIALANVYPATEFLGYEDLEFEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAESGGQIGDTGYLIANDGKF 515 (851)
T ss_pred ccccccHHHHhcccCCccccceecccccEEEEEEEeCCccceecccCCceEEEEeCCCCCCCCCCCCCCEEEEecCCcEE
Confidence 00100 0 2357899999999999999999999999999999999999999999999999999999998655555
Q ss_pred eeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhhhhhHhhhhhhhcCCCCccchhhHHHHH
Q psy16314 731 EVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVV 802 (854)
Q Consensus 731 ~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~IRRa~R~~~~~Lg~~~~~L~~LV~~~i 802 (854)
.| .+|++ . ++.++|+..-. .+. ...|-.++..|||.+|+.+|+.|+..|+|+.++..+.
T Consensus 516 ~V--------~dv~~-~-~g~i~H~~~~~--~g~-l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aAL~~vl 574 (851)
T TIGR00344 516 RV--------VDVQK-P-NGVVFHFGEVE--GGS-LKVGDKVIAVIDEKRRLRIMRNHSATHLLHAALQKVL 574 (851)
T ss_pred EE--------EEEEE-E-CCEEEEEEEec--cCC-CCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55 77776 3 44566662111 111 1357779999999999999999999999999887765
No 5
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.9e-131 Score=1183.86 Aligned_cols=485 Identities=41% Similarity=0.685 Sum_probs=416.3
Q ss_pred CCccccCCCceEeCCCCCCCCCCCcceeeecccccccccccCCcCCCCcccccccccccccceecCCCccCccCcCCCCC
Q psy16314 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVY 80 (854)
Q Consensus 1 ~~~f~~~~~h~~~~s~~~~p~~d~~llf~~agm~~~k~~~~g~~~~~~~~~~~~~~~~~q~c~r~~g~~~d~~~vg~~~~ 80 (854)
|+||+ +|||++||||||||.+||||||||||||||||||+|+++|+ ++|+||+|||||+ |||||||+|.|
T Consensus 12 l~fF~-~~~H~~v~s~~lvp~~d~~llf~nAGm~~fk~~f~g~~~p~-----~~r~~~~QkCiR~----nDld~VG~t~r 81 (865)
T PRK00252 12 LDFFE-SKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKPP-----YPRATTSQKCIRT----NDLENVGYTAR 81 (865)
T ss_pred HHHHH-hCCCEEecCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----cchhhccCCCC
Confidence 58999 79999999999999999999999999999999999999885 5899999999999 89999999999
Q ss_pred cceeeeecccccccccccccccccCCCCCCchhhhhHHHHhchhhhccCCCcCCCCccccccccchhhhhcccccccccc
Q psy16314 81 HHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYF 160 (854)
Q Consensus 81 h~t~femlg~~s~g~y~k~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~fld~f 160 (854)
||||||||||||||||||+||| .||| ||||+ .|
T Consensus 82 HhTfFEMlGn~sfgdYfK~eai---------~~aw---e~lt~-----------------------------------~~ 114 (865)
T PRK00252 82 HHTFFEMLGNFSFGDYFKEEAI---------EWAW---ELLTS-----------------------------------VL 114 (865)
T ss_pred chHHHHHhcccchhhhhHHHHH---------HHHH---HHHHH-----------------------------------Hh
Confidence 9999999999999999999999 9999 99999 78
Q ss_pred ccCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccchhhhccc
Q psy16314 161 KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFE 240 (854)
Q Consensus 161 kk~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~wH~Tffe 240 (854)
.||++++ |+|||.+ |+|++++| .+
T Consensus 115 -----------~i~~~~l-----------~vt~~~~------------------------------D~e~~~iW----~~ 138 (865)
T PRK00252 115 -----------GLPKEKL-----------YVTVYED------------------------------DDEAYDIW----KK 138 (865)
T ss_pred -----------CCCHHHE-----------EEEEcCC------------------------------CHHHHHHH----Hh
Confidence 9999999 9999986 88999999 43
Q ss_pred c--cCCCcccCCCCCcceeecCcccCCCCCccccccccCCCCCCccccCCCchhhhhcCCcchhhhhhcccccccccccc
Q psy16314 241 I--LPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEM 318 (854)
Q Consensus 241 M--lgn~~i~~f~~~DnFWe~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~~~~~~i~~~~~~~~~kdNfW~~ 318 (854)
. ++.+||++++.+||||+||++||||||||||||++..
T Consensus 139 ~~g~~~~~i~~~~~~dNfW~~G~~GpcGPcsEi~~d~g~~---------------------------------------- 178 (865)
T PRK00252 139 EIGVPPERIIRIGKKDNFWSMGDTGPCGPCSEIFYDRGEE---------------------------------------- 178 (865)
T ss_pred ccCCCHHHeecCCccCCccccCCCcCCCCCeEEEEecCcc----------------------------------------
Confidence 3 8888999988888888888888888888888887530
Q ss_pred CCCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCCCCCCchhhhHHhhhCCCCC
Q psy16314 319 GETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVIQDKRSN 398 (854)
Q Consensus 319 G~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~IDTGmGlERl~~ilqg~~Sn 398 (854)
-.||| ..++|.+++||+||||+|||||||+++|++.|||++|||||||||||+||+||++||
T Consensus 179 ---~~~~~---------------~~~~~~~~~~~lEiwNlVF~q~~~~~~g~~~~Lp~~~iDTG~GlER~~~ilq~~~sn 240 (865)
T PRK00252 179 ---YWGGP---------------PGSPEEDGDRYIEIWNLVFMQFNRDEDGNLTPLPKKNIDTGMGLERIAAVLQGVHSN 240 (865)
T ss_pred ---cCCCC---------------CCCCcCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeecCcCHHHHHHHHcCCCCc
Confidence 00111 124567889999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCCCCCCcCCccccccCCCHH
Q psy16314 399 YDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPLPKKHIDCGMGFE 478 (854)
Q Consensus 399 YdtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~~~l~~L~~~~iDtGmGlE 478 (854)
||||+|.|+|+.|++++|.+ |.
T Consensus 241 ydtd~f~~~i~~i~~~~~~~-y~--------------------------------------------------------- 262 (865)
T PRK00252 241 YETDLFRPLIKAIEELTGVK-YE--------------------------------------------------------- 262 (865)
T ss_pred chhhhHHHHHHHHHHHhCCC-CC---------------------------------------------------------
Confidence 99999999999999888763 30
Q ss_pred HHHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCCCCCCCCCCcccccchhhh
Q psy16314 479 RLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAY 558 (854)
Q Consensus 479 RL~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (854)
.+.+|
T Consensus 263 ---------------------------------------------------------------------------~~~a~ 267 (865)
T PRK00252 263 ---------------------------------------------------------------------------DDVSF 267 (865)
T ss_pred ---------------------------------------------------------------------------CCceE
Confidence 02689
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHHHH------------------
Q psy16314 559 RVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL------------------ 620 (854)
Q Consensus 559 RvIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~~~------------------ 620 (854)
||||||+||++|||+||++|||+|||||||||||||+|+| ++||++.+||++||+.+++.|
T Consensus 268 rviaDH~R~~~f~i~DG~~Psn~grgYvlRrilRRa~r~~-~~lg~~~~~l~~lv~~~~~~~~~~ypel~~~~~~i~~ii 346 (865)
T PRK00252 268 RVIADHIRAVAFLIADGVLPSNEGRGYVLRRILRRAVRHG-RLLGIKEPFLYKLVPVVIDEMGDAYPELKEKQDLIEKVL 346 (865)
T ss_pred EEEcchHHHHHHHHccCcccCCCCcchHHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhChhhHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999 689999999999999999999
Q ss_pred --------------------HHhcC---------CCCccccccccCHHHHHHH-HHcCCCCCCCCCcc------------
Q psy16314 621 --------------------LLSQG---------KGATIEDTIGLDIHSITDL-QTRGVPPTDDSPKY------------ 658 (854)
Q Consensus 621 --------------------~~~~~---------~~~~l~dt~g~~~~~~~~l-~~~~~~~t~d~~~y------------ 658 (854)
.+++. .+|+||||||||+|+++++ +++|+.++.++|.-
T Consensus 347 ~~Ee~~f~~tl~~G~~~~~~~~~~~~~~~~l~g~~~f~LydtyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~ 426 (865)
T PRK00252 347 KAEEERFLKTLERGLKLLEEALAKLKAGKVLSGEDAFKLYDTYGFPLDLTAEIARERGLTVDEEGFEAAMEEQRERARAA 426 (865)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCccCHHHHHHHHhccCCCHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhh
Confidence 00111 1367999999999999985 67899888654210
Q ss_pred -------c-cCC--CCCCCCCCccccccceeEEEEEeeCCeeeeeccCCCeeEEEeecccccccCCCccccceEEEccCc
Q psy16314 659 -------R-YTP--TQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVND 728 (854)
Q Consensus 659 -------~-~~~--~~~~t~F~GYe~~~~~a~Vlai~~dg~~V~~~~~G~~~~vvLD~TpFYaEsGGQvgDtG~I~~~~~ 728 (854)
. +.. ...+|+|.||+..+++|+|++|+.+++.|+++.+|+.+.||||+||||||+||||+|+|+|.. +.
T Consensus 427 ~~~~~~~~~~~~~~~~~~t~f~~Y~~~~~~a~v~~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~-~~ 505 (865)
T PRK00252 427 RKFKGDYNALEELLDDLATEFVGYDTLEAEAKVLALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTGVIED-GG 505 (865)
T ss_pred hhcccchhHHHHHhhcCCCeeeeeeeccccEEEEEEEeCCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEee-Cc
Confidence 0 000 001578999999999999999999999999999999999999999999999999999999987 44
Q ss_pred ceeeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhhhhhHhhhhhhhcCCCCccchhhHHHHHH
Q psy16314 729 ELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVD 803 (854)
Q Consensus 729 ~~~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~IRRa~R~~~~~Lg~~~~~L~~LV~~~i~ 803 (854)
.+.| .+|++.++ +.++|+..... +. ...|-.++..|||.+|+.+|+.|+..|+|+.++..+..
T Consensus 506 ~~~V--------~~v~~~~~-g~i~H~~~~~~--~~-l~~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~lg 568 (865)
T PRK00252 506 VFEV--------TDTQKPPN-GLIVHRGKVEE--GE-LKVGDEVTAEVDEERRRAIARNHSATHLLHAALREVLG 568 (865)
T ss_pred EEEE--------EEEEEccC-CEEEEEEEecc--CC-CCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5554 77876434 45555542111 11 12577899999999999999999999999888876543
No 6
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=100.00 E-value=7.2e-128 Score=1109.14 Aligned_cols=471 Identities=47% Similarity=0.779 Sum_probs=359.7
Q ss_pred CCccccCCCceEeCCCCCCCCCCCcceeeecccccccccccCCc-CCCCcccccccccccccceecCCCccCccCcCCCC
Q psy16314 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTV-DPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDV 79 (854)
Q Consensus 1 ~~~f~~~~~h~~~~s~~~~p~~d~~llf~~agm~~~k~~~~g~~-~~~~~~~~~~~~~~~q~c~r~~g~~~d~~~vg~~~ 79 (854)
|+||+ +|||++||||||||.+||||||||||||||||+|+|.+ .| +++|+|++|||||+||||||||+||+|.
T Consensus 7 l~fF~-~~gH~~v~s~~lvp~~d~~llf~~Agm~~fkp~f~g~~~~p-----~~~r~~~~Q~CiR~~GkhnDld~VG~t~ 80 (552)
T PF01411_consen 7 LDFFE-KKGHTIVPSSSLVPRWDPTLLFTNAGMNQFKPYFLGGEVPP-----PANRLVSSQKCIRTGGKHNDLDNVGRTG 80 (552)
T ss_dssp HHHHH-TTT-EEE----SS-TT-TTBSS--SGGGGGCCCCTTSSS-------SSSCEEEEEEEE-EETTEECGGGTTTSS
T ss_pred HHHHH-HCCCEEeccCCcccCCCCCceeeHhhHHHHHHHhcCCCCCC-----CCCcccccceeeccCCCcchhhhcCCCc
Confidence 58999 79999999999999999999999999999999999998 44 4699999999999999999999999999
Q ss_pred CcceeeeecccccccccccccccccCCCCCCchhhhhHHHHhchhhhccCCCcCCCCccccccccchhhhhccccccccc
Q psy16314 80 YHHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDY 159 (854)
Q Consensus 80 ~h~t~femlg~~s~g~y~k~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~fld~ 159 (854)
|||||||||||||||||||+||| .||| ||||+ .
T Consensus 81 rH~T~FEMlGn~sfgdYfK~eai---------~~aw---e~lt~-----------------------------------~ 113 (552)
T PF01411_consen 81 RHHTFFEMLGNFSFGDYFKEEAI---------EYAW---EFLTE-----------------------------------V 113 (552)
T ss_dssp S--SEEEEEEEEEECSS-HHHHH---------HHHH---HHHHC-----------------------------------T
T ss_pred eEeeehhhccccccccccHHHHH---------HHHH---HHHHh-----------------------------------h
Confidence 99999999999999999999999 9999 99998 7
Q ss_pred cccCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccchhhhcc
Q psy16314 160 FKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFF 239 (854)
Q Consensus 160 fkk~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~wH~Tff 239 (854)
| .||++++ |+|||.+ |.+++++| .
T Consensus 114 l-----------~i~~~~l-----------~vt~~~~------------------------------d~ea~~~w----~ 137 (552)
T PF01411_consen 114 L-----------GIPPDRL-----------YVTVFEW------------------------------DGEAGEIW----E 137 (552)
T ss_dssp T-----------T--GGGE-----------EEEEECC------------------------------ECCCCCCC----C
T ss_pred c-----------CCChHhE-----------EEEEeCC------------------------------chhHHHHH----H
Confidence 8 9999999 9999998 66899999 4
Q ss_pred cc--cCCCcccCCCCCcceeecCcccCCCCCccccccccCCCCCCccccCCCchhhhhcCCcchhhhhhccccccccccc
Q psy16314 240 EI--LPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWE 317 (854)
Q Consensus 240 eM--lgn~~i~~f~~~DnFWe~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~~~~~~i~~~~~~~~~kdNfW~ 317 (854)
.. ++..||++|+.+||||+||++||||||||||||++.. +. -|.
T Consensus 138 ~~~g~~~~~i~~~~~~~nfw~~g~~gpcgpcseI~~d~G~e--------------~~--------------------~~~ 183 (552)
T PF01411_consen 138 KIVGGPEERILVFGKKDNFWEMGDTGPCGPCSEIFYDRGEE--------------RG--------------------CWD 183 (552)
T ss_dssp ECCTTECCCEEEE-CCEEEEESSTSEEEEEEEEEEEEEECC--------------CH--------------------HHH
T ss_pred HhcCCCHHHeEecCCCCceEECCCCCCCCCCEEEEECCCcc--------------cC--------------------ccc
Confidence 44 7888999999999999999999999999999998641 00 010
Q ss_pred cCCCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCCCCCCchhhhHHhhhCCCC
Q psy16314 318 MGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVIQDKRS 397 (854)
Q Consensus 318 ~G~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~IDTGmGlERl~~ilqg~~S 397 (854)
- ...+++++++|+||||+|||||+|+++|++.|||+++|||||||||++++||+++|
T Consensus 184 ~-----------------------~~~~~~~~~~~~eiwn~vf~q~~~~~~g~~~~L~~~~idtGmgler~~~~lq~~~s 240 (552)
T PF01411_consen 184 S-----------------------QGTPTCDDDRFLEIWNLVFMQYNRDEDGSLEPLPKKNIDTGMGLERLAAVLQGVRS 240 (552)
T ss_dssp H-----------------------HSTSSHHHHHECCCCCCCCCEEEETTTSHCCCCCCCCCCCCEEHHHHCHHHCCHCC
T ss_pred c-----------------------ccccccccccHHHHHHHHHHHhccccccccccccchhhhcCCCcHHHHHHHhhhhh
Confidence 0 01234678999999999999999999999999999999999999999999999999
Q ss_pred CccccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCCCCCCcCCccccccCCCH
Q psy16314 398 NYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPLPKKHIDCGMGF 477 (854)
Q Consensus 398 nYdtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~~~l~~L~~~~iDtGmGl 477 (854)
||+||+|.|+++.++++++. +|..
T Consensus 241 ~~~tdlf~~i~~~i~~~~~~-~y~~------------------------------------------------------- 264 (552)
T PF01411_consen 241 NYDTDLFMPIIEAIEELSGV-PYKD------------------------------------------------------- 264 (552)
T ss_dssp HHHCHHTCHHHHHHHHHHC---TTS-------------------------------------------------------
T ss_pred hhchhhhhhHHHHHHHHcCC-Cccc-------------------------------------------------------
Confidence 99999999999999999886 3410
Q ss_pred HHHHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCCCCCCCCCCcccccchhh
Q psy16314 478 ERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMA 557 (854)
Q Consensus 478 ERL~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 557 (854)
....+.+
T Consensus 265 -------------------------------------------------------------------------~~~~~~a 271 (552)
T PF01411_consen 265 -------------------------------------------------------------------------EEEIDVA 271 (552)
T ss_dssp -------------------------------------------------------------------------SCCCHHH
T ss_pred -------------------------------------------------------------------------ccccccE
Confidence 0113589
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHHHH-----------------
Q psy16314 558 YRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL----------------- 620 (854)
Q Consensus 558 ~RvIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~~~----------------- 620 (854)
+|+||||+||++|||+||++|||+|||||||||||||+|++ ++||++.+||++||+.+++.|
T Consensus 272 ~rvIaDH~Ra~~f~i~DGv~PsN~GrGYvlRriiRRa~r~~-~~lg~~~~fl~~lv~~vi~~~~~~ypel~~~~~~I~~i 350 (552)
T PF01411_consen 272 LRVIADHIRALTFAIADGVLPSNEGRGYVLRRIIRRAVRFG-RKLGIEEPFLYELVPVVIESMGDFYPELKENKDYIKDI 350 (552)
T ss_dssp HHHHHHHHHHHHHHHHTT--SSSSHHHHHHHHHHHHHHHHH-HHTT-SS--HHHHHHHHHHHHTTTGTHHHHCHHHHHHH
T ss_pred EEEEcchhhceeeEecCCeeecccCCcchHHHHHHHHHHHH-HHhCCCccchHHHHHHHHHHhhccChhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999 699999999999999999999
Q ss_pred ---------------------HHhc---C------CCCccccccccCHHHHHHH-HHcCCCCCCCCCccc----------
Q psy16314 621 ---------------------LLSQ---G------KGATIEDTIGLDIHSITDL-QTRGVPPTDDSPKYR---------- 659 (854)
Q Consensus 621 ---------------------~~~~---~------~~~~l~dt~g~~~~~~~~l-~~~~~~~t~d~~~y~---------- 659 (854)
++++ . .+|+||||||||+|+++++ +++|+.+|.+++.+.
T Consensus 351 i~~EE~~F~~TL~~G~~~l~~~i~~~~~~~~lsge~aF~LYDTyGfP~Dlt~eia~e~gl~vD~~~f~~~m~~qr~~sr~ 430 (552)
T PF01411_consen 351 IKEEEERFLKTLERGLKLLEKLIKKLKKKKELSGEDAFKLYDTYGFPLDLTEEIAEEKGLSVDEEGFEYAMEEQRERSRA 430 (552)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEE-HHHHHHHHHHH---HHHHHHHHHTTT-EE-HHCCHHHHHHHCHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCChHHheeehhccCCCHHHHHHHHHHhceeecHHHHHHHHHHHHHHhhh
Confidence 0011 1 1468999999999999985 668998876554211
Q ss_pred -----------cCC--CC-CCCCCCccccccceeEEEEEeeCCeeeeeccCCCeeEEEeecccccccCCCccccceEEEc
Q psy16314 660 -----------YTP--TQ-PDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIG 725 (854)
Q Consensus 660 -----------~~~--~~-~~t~F~GYe~~~~~a~Vlai~~dg~~V~~~~~G~~~~vvLD~TpFYaEsGGQvgDtG~I~~ 725 (854)
+.. .+ ..++|.||+.++++|+|++|+.+++.+.++.+|+.+.||||+||||||||||+||+|+|..
T Consensus 431 ~~~~~~~~~~~~~~~~~l~~~teF~gYe~~~~~akVlal~~~~~~~~~v~~~~~~~VVLD~T~FYpegGGQ~~D~G~I~~ 510 (552)
T PF01411_consen 431 AKKKKSSIEEDVSALAELPKTTEFVGYEYLECEAKVLALFKDGEFVAKVEEGEEGYVVLDKTPFYPEGGGQPGDTGTIIG 510 (552)
T ss_dssp HH--------SSSTTTTCHHHEETCCCC------TT---TT--EEEEEEEEEETTEEEESEE-S--SBTTB----EEECC
T ss_pred ccccccchhhhHHHHhhhhcccccceeecccccceEEEEEeCCEEEeeecCCceEEEEECCccccCCCCCCCCCeEEEee
Confidence 000 01 1378999999999999999999999999999999999999999999999999999999998
Q ss_pred cCcceeeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhhhhhHh
Q psy16314 726 VNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAV 780 (854)
Q Consensus 726 ~~~~~~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~IRRa~ 780 (854)
++..+.| .+|+|.. +.++|+....... ...|-.++..|||+|
T Consensus 511 ~~~~~~V--------~dv~k~~--g~i~H~~~~~~g~---l~~G~~V~~~VD~eR 552 (552)
T PF01411_consen 511 DGGEFEV--------TDVQKVG--GVILHIGEVESGS---LKVGDEVTAEVDWER 552 (552)
T ss_dssp TTEEEEE--------EEEEEET--TEEEEEESSG-GG-----TTSEEEEEE-HHH
T ss_pred cceEEEE--------EEEEEEC--CEEEEEEeccCCC---CCCCCEEEEEecCCC
Confidence 8866555 8888864 6667765442111 247888999999975
No 7
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=6e-113 Score=1025.38 Aligned_cols=465 Identities=27% Similarity=0.412 Sum_probs=375.0
Q ss_pred CCccccCCCceEeCCCCCCCCCCCcceeeeccccccccccc-CCcCCCCcccccccccccccceecCCCccCccCcCCCC
Q psy16314 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFL-GTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDV 79 (854)
Q Consensus 1 ~~~f~~~~~h~~~~s~~~~p~~d~~llf~~agm~~~k~~~~-g~~~~~~~~~~~~~~~~~q~c~r~~g~~~d~~~vg~~~ 79 (854)
|+||+ ++||++|||+||||++++.|||||||||||||+|+ |.++|| ++|+|++|||||+ |||||||+|.
T Consensus 66 l~FF~-~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp-----~~r~~~sQkCiR~----nDldnVG~t~ 135 (902)
T TIGR03683 66 LSFFE-KHGHTRIKRYPVVARWRDDVYLTIASIADFQPWVTSGLVPPP-----ANPLVISQPCIRL----NDIDNVGRTG 135 (902)
T ss_pred HHHHH-hCCCEEeCCcCcCcCCCCCeeEeecchhhhhHhhcCCCCCCC-----CCCceeccccccc----cccccccCCC
Confidence 58999 69999999999999766669999999999999998 999885 5899999999999 8999999999
Q ss_pred Ccceeeeeccccccc-----ccccccccccCCCCCCchhhhhHHHHhchhhhccCCCcCCCCccccccccchhhhhcccc
Q psy16314 80 YHHTFFEMLGNWSFG-----DYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNW 154 (854)
Q Consensus 80 ~h~t~femlg~~s~g-----~y~k~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 154 (854)
||||||||||||||| ||||+||| .||| ||| +
T Consensus 136 rH~TfFEMlGn~sFg~~~~~dYfK~EaI---------~~a~---e~l-~------------------------------- 171 (902)
T TIGR03683 136 RHLTCFEMMAHHAFNYPDKEIYWKDETV---------EYCF---EFL-E------------------------------- 171 (902)
T ss_pred CcchhhhhccceeeCCCCcccCcHHHHH---------HHHH---HHH-H-------------------------------
Confidence 999999999999999 99999999 9999 999 7
Q ss_pred ccccccccCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccch
Q psy16314 155 SFGDYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVY 234 (854)
Q Consensus 155 ~fld~fkk~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~w 234 (854)
.| +||++++
T Consensus 172 ----~l-----------gi~~~~i-------------------------------------------------------- 180 (902)
T TIGR03683 172 ----EL-----------GIDPEEI-------------------------------------------------------- 180 (902)
T ss_pred ----Hc-----------CCCHHHe--------------------------------------------------------
Confidence 45 4432211
Q ss_pred hhhcccccCCCcccCCCCCcceeecCcccCCCCCccccccccCCCCCCccccCCCchhhhhcCCcchhhhhhcccccccc
Q psy16314 235 HHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDN 314 (854)
Q Consensus 235 H~TffeMlgn~~i~~f~~~DnFWe~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~~~~~~i~~~~~~~~~kdN 314 (854)
| .+||
T Consensus 181 --~-------------------------------------------------------------------------~~en 185 (902)
T TIGR03683 181 --T-------------------------------------------------------------------------YKES 185 (902)
T ss_pred --e-------------------------------------------------------------------------ecCC
Confidence 0 1256
Q ss_pred ccccCCCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCC-------CCCccCCCCCCCCCCCchhh
Q psy16314 315 FWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRET-------DGSLKPLPKKHIDCGMGFER 387 (854)
Q Consensus 315 fW~~G~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~-------dG~l~pLp~k~IDTGmGlER 387 (854)
||+|| ||||||+||||. | +||||+|||||+|++ +|++.|||+++|||||||||
T Consensus 186 fW~~G--GpcGPcsEi~~~----g--------------lEiwnlVFmq~~~~~~~~~~~~~g~~~~Lp~k~VDTG~GLER 245 (902)
T TIGR03683 186 PWEGG--GNAGPCFEVIVG----G--------------LELATLVFMQYEEDKEGEIEIKGGRYSEMPLKIVDTGYGLER 245 (902)
T ss_pred ccCCC--CCCCCceeeeeC----c--------------EeeeeeeeeeeccccccccccCCCeeeeCCCCceecCCCHHH
Confidence 66677 788888888882 2 899999999999998 89999999999999999999
Q ss_pred hHHhhhCCCCCccccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCCCCCCcCC
Q psy16314 388 LVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPLP 467 (854)
Q Consensus 388 l~~ilqg~~SnYdtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~~~l~~L~ 467 (854)
|+||+||++||||| +|.|||+.|++++|.+ |.. + .+++..+
T Consensus 246 ~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~-y~~----~---------~~~~~~~------------------------ 286 (902)
T TIGR03683 246 FVWASQGTPTAYDA-IFPEIVDKLKENAGVE-LID----E---------EILAENA------------------------ 286 (902)
T ss_pred HHHHHcCCCchHHH-HHHHHHHHHHHHhCCC-ccc----c---------hhhhhhh------------------------
Confidence 99999999999999 9999999999999974 421 0 0111101
Q ss_pred ccccccCCCHHHHHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCCCCCCCCC
Q psy16314 468 KKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVG 547 (854)
Q Consensus 468 ~~~iDtGmGlERL~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 547 (854)
+|.|++..++.+.|+++++.+++...-....|.+-
T Consensus 287 ----------------------------------~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----------- 321 (902)
T TIGR03683 287 ----------------------------------RLAGMMDIEDEEDLRELRKKVADKIGIDVEELEKI----------- 321 (902)
T ss_pred ----------------------------------hhccccCccccchhhHHhhhhhhhcccchhhhhhh-----------
Confidence 24556666666667777777776543332222100
Q ss_pred CcccccchhhhHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHHHH-------
Q psy16314 548 EEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL------- 620 (854)
Q Consensus 548 ~~~~~~~~~~~RvIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~~~------- 620 (854)
-....++|+||||+||++|||+||++|||+|||||||||||||+|++ ++||++.+ |++||+.+++.|
T Consensus 322 ----~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~lv~~~~~~~~~~ypel 395 (902)
T TIGR03683 322 ----IAPVERIYAIADHTRCLAFMLGDGIVPSNVKEGYLARLVIRRTLRLM-RELGLDIP-LSDLVEMQLEELKKIYPEL 395 (902)
T ss_pred ----ccccceEEEEcchHHHHHHHHhcCCccCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HHHHHHHHHHHHhhhChhH
Confidence 00126899999999999999999999999999999999999999999 68999999 999999999999
Q ss_pred --------------------HHh-----------cC------CCCccccccccCHHHHHHH-HHcCCCCCCC-CCc----
Q psy16314 621 --------------------LLS-----------QG------KGATIEDTIGLDIHSITDL-QTRGVPPTDD-SPK---- 657 (854)
Q Consensus 621 --------------------~~~-----------~~------~~~~l~dt~g~~~~~~~~l-~~~~~~~t~d-~~~---- 657 (854)
+++ +. ..|+||||||||+|+++++ +++|+.++.. .|.
T Consensus 396 ~~~~~~I~~ii~~Ee~~f~~Tl~~G~~~~~~~~~~~~~i~g~~~f~LyDTyGfP~dl~~eia~e~g~~vd~~~~F~~~~~ 475 (902)
T TIGR03683 396 KENKDYILDILDLEEEKYRETLERGRRIVERLLKTKKEIPLDDLIELYDSHGIPPEIVKEIAAELGAEVEIPDNFYSIVA 475 (902)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHccCCCHHHHHHHHHHcCCcccCCccHHHHHH
Confidence 000 11 1467999999999999985 7789988775 331
Q ss_pred -------------cccC---CCCCCCCCCcccc---ccceeEEEEEeeCCeeeeeccCCCeeEEEeecccccccCCCccc
Q psy16314 658 -------------YRYT---PTQPDTADGAYEF---EPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIY 718 (854)
Q Consensus 658 -------------y~~~---~~~~~t~F~GYe~---~~~~a~Vlai~~dg~~V~~~~~G~~~~vvLD~TpFYaEsGGQvg 718 (854)
..+. ..++.|+|.+|+. .+++|+|+++.. .+||||+|||||||||||+
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~T~~l~y~~~~~~e~~a~Vl~i~~-------------~~vvLd~T~FYpEgGGQ~~ 542 (902)
T TIGR03683 476 ERHEKEEKEEELPKDYEERAKDLPETRRLFYEDPTMREFEAKVLGVFD-------------NYVVLDQTAFYPEGGGQPA 542 (902)
T ss_pred HHHHHHHhccccccchhHHHhcCCCceEeccccCccceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCC
Confidence 0000 1134688999998 688999999972 3799999999999999999
Q ss_pred cceEEEccCcceeeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhhhhhHhhhhhhhcCCCCccchhhH
Q psy16314 719 DEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSLV 798 (854)
Q Consensus 719 DtG~I~~~~~~~~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~IRRa~R~~~~~Lg~~~~~L~~LV 798 (854)
|+|+|..+++.+.| .+|++ . ++.++|+.+... ...|-.++..|||.+|+.+|+.|+..|+|+.++
T Consensus 543 D~G~I~~~~~~~~V--------~dv~k-~-~g~i~H~~~~~~-----l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~~al 607 (902)
T TIGR03683 543 DTGYLITNGGKIRV--------VDVQK-V-GGVIVHKVDGEG-----IKEGDEVKGEIDWERRLRLMRHHTATHVLLAAA 607 (902)
T ss_pred CEEEEEeCCcEEEE--------EEEEE-E-CCEEEEEeCCCC-----CCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHH
Confidence 99999877666555 77877 3 456667654221 135777999999999999999999999998888
Q ss_pred HHHHH
Q psy16314 799 NTVVD 803 (854)
Q Consensus 799 ~~~i~ 803 (854)
..+..
T Consensus 608 r~vlG 612 (902)
T TIGR03683 608 RRVLG 612 (902)
T ss_pred HHHhC
Confidence 77653
No 8
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.7e-113 Score=1023.41 Aligned_cols=465 Identities=28% Similarity=0.427 Sum_probs=371.9
Q ss_pred CCccccCCCceEeCCCCCCCCCCCcceeeeccccccccccc-CCcCCCCcccccccccccccceecCCCccCccCcCCCC
Q psy16314 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFL-GTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDV 79 (854)
Q Consensus 1 ~~~f~~~~~h~~~~s~~~~p~~d~~llf~~agm~~~k~~~~-g~~~~~~~~~~~~~~~~~q~c~r~~g~~~d~~~vg~~~ 79 (854)
|+||+ +|||++|||+||||.+++.|||||||||||||+|+ |.++|| ++|+|++|||||+ |||||||+|.
T Consensus 69 l~FF~-~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp-----~~~~~~sQ~CiR~----nDldnVG~t~ 138 (900)
T PRK13902 69 LSFFE-KHGHTRIERYPVVARWRDDVYLTIASIYDFQPWVTSGLVPPP-----ANPLVISQPCIRL----NDIDNVGRTG 138 (900)
T ss_pred HHHHH-hCCCEEcCCcCcCCCCCCCeeeeecchhhhhHHhcCCCCCCC-----CCCceecccccch----hhhhhccccC
Confidence 58999 69999999999999766669999999999999999 999885 5899999999999 8999999999
Q ss_pred Ccceeeeeccccccc-----ccccccccccCCCCCCchhhhhHHHHhchhhhccCCCcCCCCccccccccchhhhhcccc
Q psy16314 80 YHHTFFEMLGNWSFG-----DYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNW 154 (854)
Q Consensus 80 ~h~t~femlg~~s~g-----~y~k~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 154 (854)
||||||||||||||| ||||+||| .||| ||||+
T Consensus 139 rH~T~FEMlGn~sFg~~~~~~YfK~eaI---------~~a~---e~lt~------------------------------- 175 (900)
T PRK13902 139 RHLTSFEMMAHHAFNYPDKEVYWKDETV---------EYCF---EFFTK------------------------------- 175 (900)
T ss_pred CchhhhhhccceeeCCCCcccccHHHHH---------HHHH---HHHHh-------------------------------
Confidence 999999999999999 99999999 9999 99998
Q ss_pred ccccccccCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccch
Q psy16314 155 SFGDYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVY 234 (854)
Q Consensus 155 ~fld~fkk~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~w 234 (854)
.| +||++++ .
T Consensus 176 ----~l-----------gi~~~~I-------------------------------------------------------~ 185 (900)
T PRK13902 176 ----EL-----------GIDPEEI-------------------------------------------------------T 185 (900)
T ss_pred ----hc-----------CCCHHHe-------------------------------------------------------e
Confidence 56 5553111 0
Q ss_pred hhhcccccCCCcccCCCCCcceeecCcccCCCCCccccccccCCCCCCccccCCCchhhhhcCCcchhhhhhcccccccc
Q psy16314 235 HHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDN 314 (854)
Q Consensus 235 H~TffeMlgn~~i~~f~~~DnFWe~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~~~~~~i~~~~~~~~~kdN 314 (854)
.+||
T Consensus 186 ----------------------------------------------------------------------------~~en 189 (900)
T PRK13902 186 ----------------------------------------------------------------------------FKES 189 (900)
T ss_pred ----------------------------------------------------------------------------eccc
Confidence 1256
Q ss_pred ccccCCCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCCCCCCchhhhHHhhhC
Q psy16314 315 FWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVIQD 394 (854)
Q Consensus 315 fW~~G~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~IDTGmGlERl~~ilqg 394 (854)
||+|| ||||||+||||. | |||||+|||||+|+ +|+++|||+++||||||||||+||+||
T Consensus 190 fW~~G--GpcGPcsEi~~~----g--------------lEiwnlVFmqy~~~-~g~~~~Lp~k~VDTG~GLER~~~v~qg 248 (900)
T PRK13902 190 WWEGG--GNAGPCFEVLVR----G--------------LELATLVFMQYKKD-GNRYVEMPLKIVDTGYGLERIAWASQG 248 (900)
T ss_pred ccCCC--CCCCCceeeeeC----C--------------EEeeeeeeeEEEcC-CCeeeeCCCCeeeCCcCHHHHHHHHcC
Confidence 67777 888888888882 2 89999999999998 899999999999999999999999999
Q ss_pred CCCCccccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCCCCCCcCCccccccC
Q psy16314 395 KRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPLPKKHIDCG 474 (854)
Q Consensus 395 ~~SnYdtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~~~l~~L~~~~iDtG 474 (854)
++||||| +|.||++.|++++|++ |.. + .+++...
T Consensus 249 ~~t~ydt-~f~~ii~~i~~~~g~~-~~~----~---------~~~~~~~------------------------------- 282 (900)
T PRK13902 249 TPTAYDA-IFGELVDKLKENAGVE-EPD----E---------EILAEAA------------------------------- 282 (900)
T ss_pred CCchHHH-HHHHHHHHHHHHhCCC-ccc----c---------hhhhhhh-------------------------------
Confidence 9999999 9999999999999974 421 0 0122111
Q ss_pred CCHHHHHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCCCCCCCCCCcccccc
Q psy16314 475 MGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGI 554 (854)
Q Consensus 475 mGlERL~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 554 (854)
+|.|++..++.+.++.+++.+++...-....|-.-. ..
T Consensus 283 ---------------------------~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~ 320 (900)
T PRK13902 283 ---------------------------RLAGLMDIEEIEDLRSLRQKVAKKLGIDVEELEELL---------------EP 320 (900)
T ss_pred ---------------------------hhcccCCcccchhHHHHHHHHHhhcccchhhhhhhc---------------cc
Confidence 133444444444555566655544322222221110 11
Q ss_pred hhhhHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHHHH--------------
Q psy16314 555 DMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL-------------- 620 (854)
Q Consensus 555 ~~~~RvIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~~~-------------- 620 (854)
..++|+||||+||++|||+||++|||+|||||||||||||+|++ ++||++.+ |++||+.+++.|
T Consensus 321 ~~~~~vIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~lv~~~~~~~~~~ypel~~~~~~I 398 (900)
T PRK13902 321 LEAIYAIADHTRTLAFMLGDGIVPSNVGEGYLARLVIRRTLRLL-DELGLDVP-LSELVDMQIDELKEDYPELKENRDYI 398 (900)
T ss_pred cceEEEEecHHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HHHHHHHHHHHHhhhChhHHHhHHHH
Confidence 36899999999999999999999999999999999999999999 58999999 999999999999
Q ss_pred -------------HHh-----------c------CCCCccccccccCHHHHHHH-HHcCCCCCC-CCCcc----------
Q psy16314 621 -------------LLS-----------Q------GKGATIEDTIGLDIHSITDL-QTRGVPPTD-DSPKY---------- 658 (854)
Q Consensus 621 -------------~~~-----------~------~~~~~l~dt~g~~~~~~~~l-~~~~~~~t~-d~~~y---------- 658 (854)
+++ + ...|+||||||||+|.++++ +++|+.++. +.|.-
T Consensus 399 ~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~~~l~g~~~f~LYDt~G~P~dl~~eia~e~g~~vd~p~~F~~~~~~~~~~~~ 478 (900)
T PRK13902 399 LDIVDLEEEKYRETLERGKRIVERLAKKKEEIPLDDLIELYDSHGIPPEIVKEIAKKKGVEVEVPDNFYSLVAERHEKAE 478 (900)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhhhhhcCCCCHHHHHHHHHHcCCccCchhhHHHHHHHHHHHHh
Confidence 000 0 12578999999999999986 678998887 54310
Q ss_pred ------c-c---CCCCCCCCCCcccc---ccceeEEEEEeeCCeeeeeccCCCeeEEEeecccccccCCCccccceEEEc
Q psy16314 659 ------R-Y---TPTQPDTADGAYEF---EPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIG 725 (854)
Q Consensus 659 ------~-~---~~~~~~t~F~GYe~---~~~~a~Vlai~~dg~~V~~~~~G~~~~vvLD~TpFYaEsGGQvgDtG~I~~ 725 (854)
. . ...++.|+|.+|+. .+++|+|+++.. .+||||+|||||||||||+|+|+|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~T~~l~y~~~~~~~~~a~Vl~i~~-------------~~vvLD~T~FYpEgGGQ~~D~G~I~~ 545 (900)
T PRK13902 479 EEEEEPVVEEERLKDLPETEKLFYEDPYMREFEAKVLGVID-------------NYVVLDQTAFYPEGGGQPADTGVLIV 545 (900)
T ss_pred hccccccchhhHhhcCCCceEeccccCccceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEe
Confidence 0 0 01134688999999 688999999972 27999999999999999999999987
Q ss_pred cCcceeeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhhhhhHhhhhhhhcCCCCccchhhHHHHHH
Q psy16314 726 VNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVD 803 (854)
Q Consensus 726 ~~~~~~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~IRRa~R~~~~~Lg~~~~~L~~LV~~~i~ 803 (854)
++..+.| .+|++ . ++.++|+.+...+ ..|-.++..|||.+|+.+|+.|+..|+|+.++..+..
T Consensus 546 ~~~~~~V--------~dv~k-~-~g~i~H~~~~~~~-----~~G~~V~~~VD~~rR~~~mr~HTAtHLL~~al~~vlG 608 (900)
T PRK13902 546 DGKGYKV--------VDVQK-V-GGVIVHVLEGEPP-----KKGDEVRGEIDWERRYRLMRHHTATHIILAAARKVLG 608 (900)
T ss_pred CCcEEEE--------EEEEE-E-CCEEEEEeCCCCC-----CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6655555 77877 3 4566666543221 1367799999999999999999999999988877653
No 9
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.3e-112 Score=974.81 Aligned_cols=362 Identities=38% Similarity=0.681 Sum_probs=311.8
Q ss_pred CCccccCCCceEeCCCCCCCCCCCcceeeecccccccccccCCcCCCCcccccccccccccceecCCCccCccCcCCCCC
Q psy16314 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVY 80 (854)
Q Consensus 1 ~~~f~~~~~h~~~~s~~~~p~~d~~llf~~agm~~~k~~~~g~~~~~~~~~~~~~~~~~q~c~r~~g~~~d~~~vg~~~~ 80 (854)
|+||+ +|||+++|||||||.+||||||||||||||||||+|+++|+ ++|+||+|||||+ ||||+|| |.|
T Consensus 11 l~FF~-~kgH~~~~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~-----~~r~~~~QkCiR~----~Dle~VG-~~r 79 (594)
T PRK01584 11 IDFFK-SKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLGEPHPS-----GTRLVDVQKCLRT----GDIDEVG-DLS 79 (594)
T ss_pred HHHHH-hCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----ccccccC-CCc
Confidence 58999 79999999999999999999999999999999999999885 5899999999999 6999999 899
Q ss_pred cceeeeecccccccccccccccccCCCCCCchhhhhHHHHhchhhhccCCCcCCCCccccccccchhhhhcccccccccc
Q psy16314 81 HHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYF 160 (854)
Q Consensus 81 h~t~femlg~~s~g~y~k~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~fld~f 160 (854)
||||||||||||||||||+||| .||| ||||+. .+|
T Consensus 80 HhTfFEMlGnfSfgdYfK~eai---------~~aw---e~lt~~---------------------------------~~l 114 (594)
T PRK01584 80 HLTFFEMLGNWSLGAYFKEESI---------KYSF---EFLTSP---------------------------------DYL 114 (594)
T ss_pred chhHHHhhccccHhhhhHHHHH---------HHHH---HHhccc---------------------------------hhc
Confidence 9999999999999999999999 9999 999981 148
Q ss_pred ccCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccchhhhccc
Q psy16314 161 KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFE 240 (854)
Q Consensus 161 kk~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~wH~Tffe 240 (854)
.||++++ |+|||.| ++. ++ .|+|++++|+. -
T Consensus 115 -----------~l~~~rl-----------~vTv~~~--~~~--~~--------------------~D~Ea~~iW~~---~ 145 (594)
T PRK01584 115 -----------NIPKDKL-----------YVTVFEG--DEE--IP--------------------RDEETASVWES---L 145 (594)
T ss_pred -----------CCCHHHe-----------EEEEeCC--CCC--CC--------------------CCHHHHHHHHH---c
Confidence 9999999 9999987 443 22 59999999954 1
Q ss_pred ccCCCcccCCCCCccee-ecCcccCCCCCccccccccCCCCCCccccCCCchhhhhcCCcchhhhhhccccccccccccC
Q psy16314 241 ILPESHIIPGSMKDNFW-EMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMG 319 (854)
Q Consensus 241 Mlgn~~i~~f~~~DnFW-e~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~~~~~~i~~~~~~~~~kdNfW~~G 319 (854)
-++.+||++++.+|||| +||++||||||||||||++..
T Consensus 146 g~~~~rI~~~~~~dNfW~~~G~~GPCGPcsEI~~d~g~~----------------------------------------- 184 (594)
T PRK01584 146 GIPKDRIFYLSREHNWWGPVGETGPCGPDTEIFVDTGKP----------------------------------------- 184 (594)
T ss_pred CCCHHHeeeCCCCCCcccccCCCcCCCCceEEEEecCCc-----------------------------------------
Confidence 27888888888788888 688777777777777776430
Q ss_pred CCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCCCCCCchhhhHHhhhCCCCCc
Q psy16314 320 ETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVIQDKRSNY 399 (854)
Q Consensus 320 ~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~IDTGmGlERl~~ilqg~~SnY 399 (854)
.|..| ..++.+++||+||||+|||||||+++|++.|||+++||||||||||++||||++|||
T Consensus 185 ---~~~~~---------------~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGLERl~~vlqg~~s~y 246 (594)
T PRK01584 185 ---KCSVN---------------CRPTCSCGKYFEIWNNVFMQYNKDEDGNYEELKRKCVDTGMGIERTIAFLQGKSSVY 246 (594)
T ss_pred ---ccccc---------------cCCCCCCCceEEEeeeeeeeeeecCCCccccCCCCceeCCcCHHHHHHHHcCCCCcc
Confidence 01000 012346789999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCCCCCCcCCccccccCCCHHH
Q psy16314 400 DTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPLPKKHIDCGMGFER 479 (854)
Q Consensus 400 dtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~~~l~~L~~~~iDtGmGlER 479 (854)
|||+|.||++.|++++|++ |.. .
T Consensus 247 dtdlf~pii~~i~~~~~~~-y~~----~---------------------------------------------------- 269 (594)
T PRK01584 247 DTEAFTPIIKRIEKISGKI-YGQ----N---------------------------------------------------- 269 (594)
T ss_pred chhhhHHHHHHHHHHhCCC-cCC----C----------------------------------------------------
Confidence 9999999999999998863 410 0
Q ss_pred HHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCCCCCCCCCCcccccchhhhH
Q psy16314 480 LVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYR 559 (854)
Q Consensus 480 L~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R 559 (854)
...+.|||
T Consensus 270 ------------------------------------------------------------------------~~~~~a~r 277 (594)
T PRK01584 270 ------------------------------------------------------------------------EEDDRSIR 277 (594)
T ss_pred ------------------------------------------------------------------------CCCceeEE
Confidence 01247999
Q ss_pred HHHHHHHHHHHHhhc--CCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHHHH-----------------
Q psy16314 560 VLADHARTLTIALAD--GGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL----------------- 620 (854)
Q Consensus 560 vIaDH~Ra~~f~iaD--Gv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~~~----------------- 620 (854)
+||||+||++|+|+| ||+|||+|||||||||||||+|+| ++||++.+||++||+.|++.|
T Consensus 278 vIaDH~R~~~f~i~D~~Gv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~i 356 (594)
T PRK01584 278 IIADHIRAACFILGDPFVVLPSNVGQGYVLRRLIRRSIRHA-KKLGIESHFLADLVDSVEEIYGSFYPELTEKKDFIKEE 356 (594)
T ss_pred EEecHHHHHHHHhhcccCCCCCCCCCchHHHHHHHHHHHHH-HHhCCCchhHHHHHHHHHHHHhhhChHHHHhHHHHHHH
Confidence 999999999999999 999999999999999999999999 589999999999999999999
Q ss_pred ---------------------HHhc---C------CCCccccccccCHHHHHHH-HHcCCCCCCCCC
Q psy16314 621 ---------------------LLSQ---G------KGATIEDTIGLDIHSITDL-QTRGVPPTDDSP 656 (854)
Q Consensus 621 ---------------------~~~~---~------~~~~l~dt~g~~~~~~~~l-~~~~~~~t~d~~ 656 (854)
.+++ + .+|+||||||||+|+++++ +++|+.+|.++|
T Consensus 357 i~~EE~~F~~tl~~G~~~l~~~i~~~~~~~~~~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f 423 (594)
T PRK01584 357 LNKEEEKFFKTLRKGEQEFIKLIPNLGSSKIIPGDIAFKLYDTYGFPYEITEELASEYGFTVDREGF 423 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCHHHHHhhhccCCCCHHHHHHHHHHcCCeecHHHH
Confidence 0010 1 1578999999999999985 779999887654
No 10
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=100.00 E-value=4.9e-85 Score=672.57 Aligned_cols=224 Identities=58% Similarity=0.973 Sum_probs=194.2
Q ss_pred CCccccCCCceEeCCCCCCCCCCCcceeeecccccccccccCCcCCCCcccccccccccccceecCCCccCccCcCCCCC
Q psy16314 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVY 80 (854)
Q Consensus 1 ~~~f~~~~~h~~~~s~~~~p~~d~~llf~~agm~~~k~~~~g~~~~~~~~~~~~~~~~~q~c~r~~g~~~d~~~vg~~~~ 80 (854)
|+||+ +|||+++|||||||.|||||||||||||||||||+|.+.|+ ++|||++|||||+ ||||+||+|+|
T Consensus 9 l~FF~-~kgH~~v~s~slvp~dDptllFtnAGM~~Fkp~f~G~~~p~-----~~r~~~~QkCiR~----~DienVG~t~r 78 (232)
T cd00673 9 LSFFE-KKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPP-----ANRLVNSQKCIRA----GDIDNVGKTGR 78 (232)
T ss_pred HHHHH-hCCCEEeCCCCcCCCCCCchheeccchhhhhHHhcCCCCCC-----CCceeeeeeceec----CChhhcccccc
Confidence 58999 79999999999999999999999999999999999999875 6899999999999 69999999999
Q ss_pred cceeeeecccccccccccccccccCCCCCCchhhhhHHHHhchhhhccCCCcCCCCccccccccchhhhhcccccccccc
Q psy16314 81 HHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYF 160 (854)
Q Consensus 81 h~t~femlg~~s~g~y~k~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~fld~f 160 (854)
||||||||||||||||||+||| .||| ||||+ .|
T Consensus 79 HhTfFEMLGNfSFgdYFK~eaI---------~~aw---e~LT~-----------------------------------~l 111 (232)
T cd00673 79 HHTFFEMLGNFSFGDYFKEEAI---------AFAW---ELLTE-----------------------------------VL 111 (232)
T ss_pred chhhhhhhcccchhhhhHHHHH---------HHHH---HHHHh-----------------------------------hc
Confidence 9999999999999999999999 9999 99999 57
Q ss_pred ccCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccchhhhccc
Q psy16314 161 KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFE 240 (854)
Q Consensus 161 kk~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~wH~Tffe 240 (854)
.||++++ |+|||.+ |++++.+|+...
T Consensus 112 -----------~l~~~rl-----------~vTv~~~------------------------------dde~~~~w~~~~-- 137 (232)
T cd00673 112 -----------GLPKDRL-----------YVSVFEG------------------------------DDEEEAIWWWKI-- 137 (232)
T ss_pred -----------CCCccce-----------EEEEeCC------------------------------CHHHHHHHHHhh--
Confidence 9999999 9999986 788999994321
Q ss_pred ccCCCcccCCCCCcceeecCcccCCCCCccccccccCCCCCCccccCCCchhhhhcCCcchhhhhhccccccccccccCC
Q psy16314 241 ILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGE 320 (854)
Q Consensus 241 Mlgn~~i~~f~~~DnFWe~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~~~~~~i~~~~~~~~~kdNfW~~G~ 320 (854)
-++..||++++.+||||+||++||||||||||||+++
T Consensus 138 g~~~~~i~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~------------------------------------------- 174 (232)
T cd00673 138 GLPGIRIERIGFKDNFWEMGGNGPCGPCSEIFYDRGE------------------------------------------- 174 (232)
T ss_pred CCCHHHeeeCCccCCCCCCCCCcCCCCCEEEEEccCC-------------------------------------------
Confidence 1566777776666666666666666666666666543
Q ss_pred CCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCCCCCCchhhhHHhhhCC
Q psy16314 321 TGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVIQDK 395 (854)
Q Consensus 321 ~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~IDTGmGlERl~~ilqg~ 395 (854)
. ..+..+++.+++||+||||+|||||+|+++|++.|||+|+||||||||||++|+||+
T Consensus 175 ----------------~-~~~~~~~~~~~~r~lEIWNlVFmqy~r~~~g~l~pLp~k~IDTGmGlERla~vlQg~ 232 (232)
T cd00673 175 ----------------E-RDAASLPNEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMGLERLVWVLQGV 232 (232)
T ss_pred ----------------C-cCccccccCCCCCEEEEeeeeeeeeeccCCCCCccCCCCeeeCCcCHHHHHHHHcCC
Confidence 1 111124567889999999999999999999999999999999999999999999985
No 11
>KOG0188|consensus
Probab=100.00 E-value=4e-84 Score=732.14 Aligned_cols=366 Identities=54% Similarity=0.864 Sum_probs=287.3
Q ss_pred ccccccc-cCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccc
Q psy16314 155 SFGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDV 233 (854)
Q Consensus 155 ~fld~fk-k~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~ 233 (854)
+|++||+ ++|++|+|||+||.+||||||+|||||||||+|+|+ +++++|++|+|||||+||||||||+||+|.
T Consensus 10 tFldfF~~k~H~~V~SSsViP~dDpTLLFaNAGMNQFKpifLgt------~a~lkRa~NsQKCIRAGGKHNDLdDVGkD~ 83 (895)
T KOG0188|consen 10 TFLDFFKSKHHKIVHSSSVIPFDDPTLLFANAGMNQFKPIFLGT------MAKLKRAANSQKCIRAGGKHNDLDDVGKDF 83 (895)
T ss_pred HHHHHHHhcCceEeccCCcccCCCCeeEEeccchhhcchhhhhc------hhhhHhhhhhhhHHhccCCcCChhHhchhc
Confidence 5799996 679999999999999999999999999999999996 568999999999999999999999999999
Q ss_pred hhhhcccccCCCcccCCCCCcce--------eecCcccCCCCCccccccccCCCCCCccccCCCchhhhh----cCCcch
Q psy16314 234 YHHTFFEILPESHIIPGSMKDNF--------WEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKA----DLLPSK 301 (854)
Q Consensus 234 wH~TffeMlgn~~i~~f~~~DnF--------We~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~----~~~~~~ 301 (854)
+||||||||||| ||+||| ||+++.....|--.+++..++| ..... .++|-|.... ++++++
T Consensus 84 yHhTfFEMlGNW-----SFGdYfK~Eac~~AwelLt~vygi~~dRLYVtYF~G-de~~G-l~~D~E~r~iW~~~Gvp~sr 156 (895)
T KOG0188|consen 84 YHHTFFEMLGNW-----SFGDYFKEEACAWAWELLTFVYGIPTDRLYVTYFGG-DEKLG-LEPDLECREIWNELGVPDSR 156 (895)
T ss_pred cccCchhhcCCC-----CcchHHHHHHHHHHHHHHHHhhcCCCceEEEEEecC-ccccC-CCCCcHHHHHHHHcCCChhh
Confidence 999999999996 778998 9999765555555565555543 32222 3567665543 466778
Q ss_pred hhhhhccccccccccccCCCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCCCC
Q psy16314 302 LTRLENQRSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDC 381 (854)
Q Consensus 302 i~~~~~~~~~kdNfW~~G~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~IDT 381 (854)
|+ +++++|||||||++|||||||||||| + +.+.+.+
T Consensus 157 IL----p~~~kDNFWEMGdtGPCGPCtEIHyD-----r----iG~r~a~------------------------------- 192 (895)
T KOG0188|consen 157 IL----PFGMKDNFWEMGDTGPCGPCTEIHYD-----R----IGGRDAV------------------------------- 192 (895)
T ss_pred cc----CCccccchhhhcCCCCCCcchhhhhh-----h----hcCcchH-------------------------------
Confidence 76 68999999999999999999999998 1 1111111
Q ss_pred CCchhhhHHhhhCCCCCccccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCCC
Q psy16314 382 GMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGR 461 (854)
Q Consensus 382 GmGlERl~~ilqg~~SnYdtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~~ 461 (854)
|| ++.++++-+++|+.++++|+|.+ ++
T Consensus 193 -----~L-----------------------------------VN~ddp~v~EiWNlVFiq~NRe~-------------dG 219 (895)
T KOG0188|consen 193 -----KL-----------------------------------VNHDDPDVLEIWNIVFIQYNREA-------------DG 219 (895)
T ss_pred -----HH-----------------------------------hcCCCcCceeeeeeeeeeecccc-------------CC
Confidence 11 11234455678888899999953 45
Q ss_pred CCCcCCccccccCCCHHHHHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCCC
Q psy16314 462 GLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDN 541 (854)
Q Consensus 462 ~l~~L~~~~iDtGmGlERL~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 541 (854)
.|.|||++|||||||||||++|||++.||||||+|.| |-+
T Consensus 220 sL~pLp~khIDTGMGfERLvsVlQnk~SNYDTDlFtP----------------if~------------------------ 259 (895)
T KOG0188|consen 220 SLKPLPKKHIDTGMGFERLVSVLQNKTSNYDTDLFTP----------------IFE------------------------ 259 (895)
T ss_pred ccccCcccccccccCHHHHHHHHhcccccccchhhHH----------------HHH------------------------
Confidence 7999999999999999999999999999999999986 000
Q ss_pred CCCCCCCcccccchhhhHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHHHHH
Q psy16314 542 TGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLL 621 (854)
Q Consensus 542 ~~~~~~~~~~~~~~~~~RvIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~~~~ 621 (854)
|+..+.
T Consensus 260 ----------------------------------------------------aiq~~~---------------------- 265 (895)
T KOG0188|consen 260 ----------------------------------------------------AIQEGT---------------------- 265 (895)
T ss_pred ----------------------------------------------------HHHHhc----------------------
Confidence 000000
Q ss_pred HhcCCCCccccccccCHHHHHHHHHcCCCCCCCCCccccCCCCCCCCCCccccccceeEEEEEeeCCeeeeeccCCCeeE
Q psy16314 622 LSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAG 701 (854)
Q Consensus 622 ~~~~~~~~l~dt~g~~~~~~~~l~~~~~~~t~d~~~y~~~~~~~~t~F~GYe~~~~~a~Vlai~~dg~~V~~~~~G~~~~ 701 (854)
+..|+ |
T Consensus 266 -----------------------------------~~~Yt---------G------------------------------ 271 (895)
T KOG0188|consen 266 -----------------------------------GARYT---------G------------------------------ 271 (895)
T ss_pred -----------------------------------CCCcc---------C------------------------------
Confidence 00011 0
Q ss_pred EEeecccccccCCCccccceEEEccCcceeeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhhhhhHhh
Q psy16314 702 ILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVR 781 (854)
Q Consensus 702 vvLD~TpFYaEsGGQvgDtG~I~~~~~~~~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~IRRa~R 781 (854)
+|...| +-.++| |.|-. ..+-+.+.||..|.|. |+||+|||+||||+|
T Consensus 272 ----------------~d~d~~---D~AyRV-------vADH~----RtlTvalsDG~~Pdn~--GrgyvLRRILRRavr 319 (895)
T KOG0188|consen 272 ----------------EDADGI---DTAYRV-------VADHA----RTLTVALSDGGVPDNT--GRGYVLRRILRRAVR 319 (895)
T ss_pred ----------------Cccccc---hhhHHH-------HHHHh----hhhheeeecCCCCCCC--CChhHHHHHHHHHHH
Confidence 000000 001222 12211 1234668889999986 499999999999999
Q ss_pred hhhhhcCCCCccchhhHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy16314 782 YGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNESHLAQ 850 (854)
Q Consensus 782 ~~~~~Lg~~~~~L~~LV~~~i~~l~~~yPEl~~~kd~I~~iL~~EE~kF~~TL~kG~~i~~k~~~~~~~ 850 (854)
|++++|+++.++|+.|||.+++.|++.||||+.+.+.|.++|+.||+.|.+||+||+++|++.++.+.+
T Consensus 320 ya~e~l~~~~g~~~~LVpvvv~~lgd~fPEl~~~~~~v~diineEE~~F~ktl~rg~~~f~r~~~~~~~ 388 (895)
T KOG0188|consen 320 YAHEKLNAPPGFFSTLVPVVVETLGDAFPELKRDPQHVIDIINEEEAQFLKTLDRGRKLFDRVARELGS 388 (895)
T ss_pred HHHHHhCCCcchhhhhhHHHHHHHhhhchhhhcCHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999988865
No 12
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=1.5e-78 Score=729.15 Aligned_cols=374 Identities=47% Similarity=0.755 Sum_probs=287.7
Q ss_pred ccccccc-cCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccc
Q psy16314 155 SFGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDV 233 (854)
Q Consensus 155 ~fld~fk-k~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~ 233 (854)
+|++||+ ++|+++||||+||.||+|||||||||+||||||+|.++|++++++++|+|++|||||+||||||||+||+|.
T Consensus 19 ~Fl~FF~~~gH~~v~s~slvp~~dptllftnAGm~~Fk~~f~G~~~p~~~~~~~~R~~~~QkCiR~gGKHnDlenVG~t~ 98 (936)
T PLN02900 19 TFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQKCIRAGGKHNDLDDVGKDT 98 (936)
T ss_pred HHHHHHHhCCCEEeCCCCcCCCCCCCeeeeecchhhhhhhhcCCCCCCCCCCCCCceeeecccccCCCCCCCHhhccCCC
Confidence 4689996 689999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred hhhhcccccCCCcccCCCCCcce--------eecCcccCCCCCccccccccCCCCCCccccCCCchhhhhc---CCcchh
Q psy16314 234 YHHTFFEILPESHIIPGSMKDNF--------WEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKAD---LLPSKL 302 (854)
Q Consensus 234 wH~TffeMlgn~~i~~f~~~DnF--------We~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~---~~~~~i 302 (854)
||||||||||| |||+||| ||++|.....|-..|+...+.++. ..++|+|+++.| +.+++|
T Consensus 99 rHhTfFEMlGn-----fSfgdYfK~eaI~~awe~lT~~l~i~~~~l~vTv~~~D~----~~~~d~Ea~~iW~~~~~~~rI 169 (936)
T PLN02900 99 YHHTFFEMLGN-----WSFGDYFKKEAIGWAWELLTKVYGLPADRLYATYFGGDE----KQAPDDEARAIWLDYLPEERV 169 (936)
T ss_pred CchHHHHhhhc-----cchhhhhHHHHHHHHHHHHHHhcCCCHHHEEEEEeCCCC----CcCCCHHHHHHHHHhCCHHHe
Confidence 99999999999 7889999 999986554454455433222111 124555988865 555677
Q ss_pred hhhhccccccccccccCCCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCCCCC
Q psy16314 303 TRLENQRSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCG 382 (854)
Q Consensus 303 ~~~~~~~~~kdNfW~~G~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~IDTG 382 (854)
++ ++.+||||+||++||||||||||||+ . ...+++ .+|. .|
T Consensus 170 ~~----~~~~dNfW~~G~tGpcGPcsEi~yD~-----g----~~~~~~----------------------~~~~--~~-- 210 (936)
T PLN02900 170 LP----FGCKDNFWEMGDTGPCGPCSEIHYDR-----I----GERDAA----------------------DLVN--ND-- 210 (936)
T ss_pred ec----CCcccCCccCCCCcCCCCCeEEEEec-----C----CccCcc----------------------ccCC--CC--
Confidence 64 46789999999999999999999984 0 001111 1121 12
Q ss_pred CchhhhHHhhhCCCCCccccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCCCC
Q psy16314 383 MGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRG 462 (854)
Q Consensus 383 mGlERl~~ilqg~~SnYdtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~~~ 462 (854)
.+|.++|||-|+++|+-+ .++.
T Consensus 211 --~~r~lEiwNlVFmq~~~~--------------------------------------------------------~~g~ 232 (936)
T PLN02900 211 --DPRFIEIWNLVFIQFNRE--------------------------------------------------------ADGS 232 (936)
T ss_pred --CCCEEEEeeeeeeeeeec--------------------------------------------------------CCCc
Confidence 368888999888887531 0135
Q ss_pred CCcCCccccccCCCHHHHHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCCCC
Q psy16314 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNT 542 (854)
Q Consensus 463 l~~L~~~~iDtGmGlERL~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 542 (854)
|.|||+++||||||||||++|||+++||||||+|.| +
T Consensus 233 ~~~Lp~~~IDTGmGLERl~~vlqg~~snydtDlf~p-----------------------i-------------------- 269 (936)
T PLN02900 233 LKPLPAKHVDTGMGLERLASILQNKPSNYDTDLFMP-----------------------I-------------------- 269 (936)
T ss_pred eeeCCCCeeecCcCHHHHHHHHcCCCCcchhhhHHH-----------------------H--------------------
Confidence 899999999999999999999999999999999985 0
Q ss_pred CCCCCCcccccchhhhHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHHHHHH
Q psy16314 543 GRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLLL 622 (854)
Q Consensus 543 ~~~~~~~~~~~~~~~~RvIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~~~~~ 622 (854)
+..|. +..|.+.
T Consensus 270 ---------------i~~i~-------------------------------------~~~~~~~---------------- 281 (936)
T PLN02900 270 ---------------FDAIQ-------------------------------------EATGARP---------------- 281 (936)
T ss_pred ---------------HHHHH-------------------------------------HHhCCCc----------------
Confidence 00011 1111100
Q ss_pred hcCCCCccccccccCHHHHHHHHHcCCCCCCCCCccccCCCCCCCCCCccccccceeEEEEEeeCCeeeeeccCCCeeEE
Q psy16314 623 SQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGI 702 (854)
Q Consensus 623 ~~~~~~~l~dt~g~~~~~~~~l~~~~~~~t~d~~~y~~~~~~~~t~F~GYe~~~~~a~Vlai~~dg~~V~~~~~G~~~~v 702 (854)
|.. ..|.... + .
T Consensus 282 -------------------------------------~~~-------~~y~~~~-~--------------------~--- 293 (936)
T PLN02900 282 -------------------------------------YAG-------KVGAEDD-D--------------------R--- 293 (936)
T ss_pred -------------------------------------ccc-------ccccccc-c--------------------c---
Confidence 000 0000000 0 0
Q ss_pred EeecccccccCCCccccceEEEccCcceeeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhhhhhHhhh
Q psy16314 703 LLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRY 782 (854)
Q Consensus 703 vLD~TpFYaEsGGQvgDtG~I~~~~~~~~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~IRRa~R~ 782 (854)
-| -.++| +.|-. ..+.+|++||..|+|.+ +||+|||+||||+||
T Consensus 294 ---------------~~--------~a~rv-------iaDH~----R~~~f~i~DGv~PsN~g--rgYvlRrilRRa~r~ 337 (936)
T PLN02900 294 ---------------VD--------MAYRV-------VADHI----RTLSFAIADGVVPSNEG--RGYVLRRLLRRAVRY 337 (936)
T ss_pred ---------------cc--------eeeee-------ehhhH----HHHHHHHhcCCccCCCC--ccHHHHHHHHHHHHH
Confidence 00 01111 12211 12458889999999964 999999999999999
Q ss_pred hhhhcCCCCccchhhHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16314 783 GTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNESHLA 849 (854)
Q Consensus 783 ~~~~Lg~~~~~L~~LV~~~i~~l~~~yPEl~~~kd~I~~iL~~EE~kF~~TL~kG~~i~~k~~~~~~ 849 (854)
++..||++.+||++||+.+++.|++.||||.+.++.|.++|..||++|.+||++|.++|++++++++
T Consensus 338 ~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~~i~~~~ 404 (936)
T PLN02900 338 GRLLLGAEEGFFPALVEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKKALAAAK 404 (936)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHhccCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9543899999999999999999999999999999999999999999999999999999999998765
No 13
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.1e-76 Score=691.19 Aligned_cols=355 Identities=41% Similarity=0.685 Sum_probs=283.8
Q ss_pred ccccccc-cCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccc
Q psy16314 155 SFGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDV 233 (854)
Q Consensus 155 ~fld~fk-k~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~ 233 (854)
+||+||+ |+|+++||+|+||.||||||||||||+||||||+|.+.||. .|+|+||||||+ ||+||||++.
T Consensus 14 ~FL~FF~~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~f~g~v~p~~-----~r~~~sQkcIR~----NDieNVG~T~ 84 (879)
T COG0013 14 KFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPA-----NRAVTSQKCIRT----NDIDNVGYTA 84 (879)
T ss_pred HHHHHHHHCCCeecCCCCcCCCCCCCeEEeecccccchhhhcCCCCCCC-----CCeecccccccc----CchhhcCccc
Confidence 5799996 78999999999999999999999999999999999877754 489999999999 9999999999
Q ss_pred hhhhcccccCCCcccCCCCCcce--------eecCcccCCCCCccccccccCCCCCCccccCCCchhhhhc-----CCcc
Q psy16314 234 YHHTFFEILPESHIIPGSMKDNF--------WEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKAD-----LLPS 300 (854)
Q Consensus 234 wH~TffeMlgn~~i~~f~~~DnF--------We~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~-----~~~~ 300 (854)
||||||||||| |||+||| |+++|.... |..+++ +.++|.+||+++..| ++++
T Consensus 85 RHhTfFEMLGN-----fSFGdYFKeeAI~~AwEflT~~lg-----l~~ekL-----~vtvy~~Ddea~~~W~~~~gip~~ 149 (879)
T COG0013 85 RHHTFFEMLGN-----FSFGDYFKEEAIEFAWEFLTKVLG-----LPKEKL-----YVTVYEDDDEAYNEWEKIIGIPPE 149 (879)
T ss_pred cchhHHHhhhc-----CchhHHHHHHHHHHHHHHHHhhcC-----CCHHHE-----EEEEecCchHHHHHHHhhcCCCHH
Confidence 99999999999 7889999 999986443 334444 377888999988755 6677
Q ss_pred hhhhhhccccccccccccCCCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCCC
Q psy16314 301 KLTRLENQRSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHID 380 (854)
Q Consensus 301 ~i~~~~~~~~~kdNfW~~G~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~ID 380 (854)
+|++ ++.+||||+||+ ||||||||||||+++ ++|.- +. ..+.+|
T Consensus 150 rIir----~~~~dNfW~~G~-GPcGPcsEI~yD~G~-----------------~~~~~--------~~------~~~~~d 193 (879)
T COG0013 150 RIIR----IGASDNFWEMGD-GPCGPCSEIFYDRGE-----------------EIGGG--------PP------GSPDED 193 (879)
T ss_pred Heee----cCcCCCCCCCCC-cCCCCceEEEEcCCc-----------------ccCCC--------CC------CCcCCC
Confidence 8875 468999999999 999999999999743 12210 00 112233
Q ss_pred CCCchhhhHHhhhCCCCCccccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCC
Q psy16314 381 CGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 460 (854)
Q Consensus 381 TGmGlERl~~ilqg~~SnYdtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~ 460 (854)
-+|+.+|||-|+++|+.|- .+
T Consensus 194 ----~dR~lEiwNLVFmQfnr~~-------------------------------------------------------~~ 214 (879)
T COG0013 194 ----GDRYLEIWNLVFMQYNRDP-------------------------------------------------------GD 214 (879)
T ss_pred ----CCceEEEeeeeehhhccCC-------------------------------------------------------CC
Confidence 3799999999888886531 12
Q ss_pred CCCCcCCccccccCCCHHHHHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCC
Q psy16314 461 RGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPD 540 (854)
Q Consensus 461 ~~l~~L~~~~iDtGmGlERL~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 540 (854)
+.|.|||+|+||||||||||++|+|+++||||||+|.+
T Consensus 215 g~~~~Lp~k~IDTGmGLERi~~vlQ~~~tnyd~dlf~~------------------------------------------ 252 (879)
T COG0013 215 GNYTPLPKKNIDTGMGLERIAAVLQGVPTNYDTDLFRP------------------------------------------ 252 (879)
T ss_pred CCcccCCCCCcccCccHHHHHHHHcCCCcchhhhhhHH------------------------------------------
Confidence 46899999999999999999999999999999999974
Q ss_pred CCCCCCCCcccccchhhhHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHHHH
Q psy16314 541 NTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620 (854)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~RvIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~~~ 620 (854)
-.+.++.+. |.
T Consensus 253 ----------------ii~~~e~~~-------------------------------------g~---------------- 263 (879)
T COG0013 253 ----------------IIKAIEKLT-------------------------------------GK---------------- 263 (879)
T ss_pred ----------------HHHHHHHHh-------------------------------------CC----------------
Confidence 000111000 00
Q ss_pred HHhcCCCCccccccccCHHHHHHHHHcCCCCCCCCCccccCCCCCCCCCCccccccceeEEEEEeeCCeeeeeccCCCee
Q psy16314 621 LLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEA 700 (854)
Q Consensus 621 ~~~~~~~~~l~dt~g~~~~~~~~l~~~~~~~t~d~~~y~~~~~~~~t~F~GYe~~~~~a~Vlai~~dg~~V~~~~~G~~~ 700 (854)
+|.... ++.
T Consensus 264 ------------------------------------~~~~~~-----~~~------------------------------ 272 (879)
T COG0013 264 ------------------------------------KYGEDE-----EDP------------------------------ 272 (879)
T ss_pred ------------------------------------cCCccc-----ccc------------------------------
Confidence 110000 000
Q ss_pred EEEeecccccccCCCccccceEEEccCcceeeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhhhhhHh
Q psy16314 701 GILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAV 780 (854)
Q Consensus 701 ~vvLD~TpFYaEsGGQvgDtG~I~~~~~~~~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~IRRa~ 780 (854)
+..+.| +.|-. ..+.+|++||..|+|.+ +||+|||+||||+
T Consensus 273 --------------------------~~s~rV-------IADH~----Rs~~f~iaDGv~PSNeg--rGYvlRriiRRa~ 313 (879)
T COG0013 273 --------------------------DVSFRV-------IADHI----RSLAFMIADGVLPSNEG--RGYVLRRIIRRAL 313 (879)
T ss_pred --------------------------ceeEEE-------ehhHH----HHHHHHHhCCCCcCCCC--ccHHHHHHHHHHH
Confidence 001111 12211 12458899999999975 9999999999999
Q ss_pred hhhhhhcCCCCccchhhHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy16314 781 RYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNESHLAQ 850 (854)
Q Consensus 781 R~~~~~Lg~~~~~L~~LV~~~i~~l~~~yPEl~~~kd~I~~iL~~EE~kF~~TL~kG~~i~~k~~~~~~~ 850 (854)
||+ ++||+..+||++||+++++.|++.||||.++.+.|.++|..||++|.+||++|.++|++.++++++
T Consensus 314 R~~-~~LG~~~~fl~~LV~~~~~~m~~~ypel~~~~~~I~~vl~~EEe~F~~TL~~G~~l~~~~~~~~~~ 382 (879)
T COG0013 314 RHG-KLLGIKEPFLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKLEEERFAKTLERGLKLLEKELAKLKK 382 (879)
T ss_pred HHH-HHhCCCchHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999 799999999999999999999999999999999999999999999999999999999999999876
No 14
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=1.2e-73 Score=684.30 Aligned_cols=362 Identities=40% Similarity=0.674 Sum_probs=280.5
Q ss_pred ccccccc-cCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccc
Q psy16314 155 SFGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDV 233 (854)
Q Consensus 155 ~fld~fk-k~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~ 233 (854)
+|++||+ ++|+++||||+||.||+||||||||||||||||+|+++|| ++|+||||||||+ ||||+||+|.
T Consensus 5 ~fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~-----~~r~~~~QkCiR~----nDld~VG~t~ 75 (851)
T TIGR00344 5 TFLDFFKEKGHQVIPSASLVPRNDPTLLLTNAGMAQFKPIFTGIVKPP-----SNRLVNAQPCIRL----NDIENVGRTA 75 (851)
T ss_pred HHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----cchhhhcCCC
Confidence 5789996 6899999999999999999999999999999999988774 5899999999999 9999999999
Q ss_pred hhhhcccccCCCcccCCCCCcce--------eecCcccCCCCCccccccccCCCCCCccccCCCchhhhhc----CCcch
Q psy16314 234 YHHTFFEILPESHIIPGSMKDNF--------WEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKAD----LLPSK 301 (854)
Q Consensus 234 wH~TffeMlgn~~i~~f~~~DnF--------We~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~----~~~~~ 301 (854)
||||||||||| |||+||| ||++|.... |..++++ .|++..|+|+++.| +.+++
T Consensus 76 rHhTfFEMlGn-----fSFgdYfK~eai~~awe~lT~~~~-----i~~~rl~-----vTv~~~D~ea~~iW~~~g~~~~~ 140 (851)
T TIGR00344 76 RHHTFFEMLGN-----FSFGDYFKEEAIAFAWELLTSVLG-----LDKERLY-----VTVYEDDEEAYEIWEKHGIPAER 140 (851)
T ss_pred cchhhHHhhcc-----cchhhhhHHHHHHHHHHHHhhhcC-----CChHHEE-----EEEcCCCHHHHHHHHhcCCCHHH
Confidence 99999999999 6889999 999986443 3344443 67788899998876 56677
Q ss_pred hhhhhccccccccccccCCCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCCCC
Q psy16314 302 LTRLENQRSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDC 381 (854)
Q Consensus 302 i~~~~~~~~~kdNfW~~G~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~IDT 381 (854)
|++ ++.+||||+||+ ||||||||||||+++ .. +++ .| .+|. +.|
T Consensus 141 i~~----~~~~dNfW~~G~-GpcGPcsEi~yD~g~---~~------~~~-----------------~~--~~~~--~~~- 184 (851)
T TIGR00344 141 IIR----CGDKDNFWDMGD-GPCGPCTEIYYDRGE---FV------GGK-----------------PG--EPEF--FEE- 184 (851)
T ss_pred ccc----CCccCCcCCCCC-cCCccCeEEEEecCc---cc------CCC-----------------CC--cccc--cCC-
Confidence 765 356899999999 999999999999732 10 000 01 0111 223
Q ss_pred CCchhhhHHhhhCCCCCccccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCCC
Q psy16314 382 GMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGR 461 (854)
Q Consensus 382 GmGlERl~~ilqg~~SnYdtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~~ 461 (854)
.+|+++|||-|+++|+.+ .++
T Consensus 185 ---~~r~lEiwNlVFmq~~~~--------------------------------------------------------~~g 205 (851)
T TIGR00344 185 ---NDRYVEVWNLVFMQFNRD--------------------------------------------------------PDG 205 (851)
T ss_pred ---CCcEEEEeeeeeEeeeec--------------------------------------------------------CCC
Confidence 369999999888877431 124
Q ss_pred CCCcCCccccccCCCHHHHHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCCC
Q psy16314 462 GLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDN 541 (854)
Q Consensus 462 ~l~~L~~~~iDtGmGlERL~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 541 (854)
.|.|||+++||||||||||++|||+++||||||+|.+ +.+
T Consensus 206 ~~~~Lp~~~IDTGmGLERl~~vlqg~~snydtD~f~~-----------------------ii~----------------- 245 (851)
T TIGR00344 206 NYTPLPKKNIDTGMGLERFVAVLQGVPTNYDTDIFLP-----------------------LIE----------------- 245 (851)
T ss_pred ceeeCCCCeeecCcCHHHHHHHHcCCCCcchhhhHHH-----------------------HHH-----------------
Confidence 6999999999999999999999999999999999985 000
Q ss_pred CCCCCCCcccccchhhhHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHHHHH
Q psy16314 542 TGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLL 621 (854)
Q Consensus 542 ~~~~~~~~~~~~~~~~~RvIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~~~~ 621 (854)
.|. +..|.+
T Consensus 246 ------------------~i~-------------------------------------~~~g~~---------------- 254 (851)
T TIGR00344 246 ------------------KIE-------------------------------------EITGVK---------------- 254 (851)
T ss_pred ------------------HHH-------------------------------------HHhCCC----------------
Confidence 000 011110
Q ss_pred HhcCCCCccccccccCHHHHHHHHHcCCCCCCCCCccccCCCCCCCCCCccccccceeEEEEEeeCCeeeeeccCCCeeE
Q psy16314 622 LSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAG 701 (854)
Q Consensus 622 ~~~~~~~~l~dt~g~~~~~~~~l~~~~~~~t~d~~~y~~~~~~~~t~F~GYe~~~~~a~Vlai~~dg~~V~~~~~G~~~~ 701 (854)
| .. .. .|- .
T Consensus 255 ------------------------------------y--~~----~~-~~~------------~---------------- 263 (851)
T TIGR00344 255 ------------------------------------Y--DS----NN-AGI------------M---------------- 263 (851)
T ss_pred ------------------------------------C--Cc----Cc-ccc------------c----------------
Confidence 0 00 00 000 0
Q ss_pred EEeecccccccCCCccccceEEEccCcceeeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhhhhhHhh
Q psy16314 702 ILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVR 781 (854)
Q Consensus 702 vvLD~TpFYaEsGGQvgDtG~I~~~~~~~~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~IRRa~R 781 (854)
|...+. ..-.++| +.|-. ..+.+|++||..|+|.+ +||+|||+||||+|
T Consensus 264 -----------------d~~~~~-~~~~~rv-------iaDH~----R~~~f~i~DGv~PsN~g--rgYvlRrilRRa~r 312 (851)
T TIGR00344 264 -----------------DEKRVE-DLRSLRV-------IADHT----RALAFMLADGVVPSNEG--RGYVLRRLIRRALR 312 (851)
T ss_pred -----------------cccccc-cchheee-------ehhhh----hhhhhhhccCcccCCCC--CchhHHHHHHHHHH
Confidence 000000 0001111 22321 22568999999999975 99999999999999
Q ss_pred hhhhhcCCCCccchhhHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16314 782 YGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNESHLA 849 (854)
Q Consensus 782 ~~~~~Lg~~~~~L~~LV~~~i~~l~~~yPEl~~~kd~I~~iL~~EE~kF~~TL~kG~~i~~k~~~~~~ 849 (854)
|+ ++||++.+||++||+.+++.|++.||||.+.++.|.++|..||++|.+||++|.++|++++++++
T Consensus 313 ~~-~~lg~~~~fl~~lv~~~~~~m~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~l~~~~~~~~ 379 (851)
T TIGR00344 313 HG-KKLGLKEAFLYKLVPTLIEVLGDYYPELKEKQEFVEQILELEEERFAKTLERGLRLFEKLLKKLG 379 (851)
T ss_pred HH-HHhCCCchHHHHHHHHHHHHHhhhChHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99 69999999999999999999999999999999999999999999999999999999999997653
No 15
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5e-73 Score=681.05 Aligned_cols=349 Identities=42% Similarity=0.717 Sum_probs=279.7
Q ss_pred ccccccc-cCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccc
Q psy16314 155 SFGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDV 233 (854)
Q Consensus 155 ~fld~fk-k~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~ 233 (854)
+|++||+ ++|+++||||+||+||+||||||||||||||||+|.++|| ++|+||||||||+ ||||+||+|.
T Consensus 10 ~fl~fF~~~~H~~v~s~~lvp~~d~~llf~nAGm~~fk~~f~g~~~p~-----~~r~~~~QkCiR~----nDld~VG~t~ 80 (865)
T PRK00252 10 KFLDFFESKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKPP-----YPRATTSQKCIRT----NDLENVGYTA 80 (865)
T ss_pred HHHHHHHhCCCEEecCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----cchhhccCCC
Confidence 5789996 6899999999999999999999999999999999988774 4899999999999 9999999999
Q ss_pred hhhhcccccCCCcccCCCCCcce--------eecCcccCCCCCccccccccCCCCCCccccCCCchhhhhc-----CCcc
Q psy16314 234 YHHTFFEILPESHIIPGSMKDNF--------WEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKAD-----LLPS 300 (854)
Q Consensus 234 wH~TffeMlgn~~i~~f~~~DnF--------We~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~-----~~~~ 300 (854)
||||||||||| |||+||| ||++|... .|..++++ +|++.+|+|+++.| +.++
T Consensus 81 rHhTfFEMlGn-----~sfgdYfK~eai~~awe~lt~~~-----~i~~~~l~-----vt~~~~D~e~~~iW~~~~g~~~~ 145 (865)
T PRK00252 81 RHHTFFEMLGN-----FSFGDYFKEEAIEWAWELLTSVL-----GLPKEKLY-----VTVYEDDDEAYDIWKKEIGVPPE 145 (865)
T ss_pred CchHHHHHhcc-----cchhhhhHHHHHHHHHHHHHHHh-----CCCHHHEE-----EEEcCCCHHHHHHHHhccCCCHH
Confidence 99999999999 6889999 99997644 34445553 77888999998865 3456
Q ss_pred hhhhhhccccccccccccCCCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCCC
Q psy16314 301 KLTRLENQRSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHID 380 (854)
Q Consensus 301 ~i~~~~~~~~~kdNfW~~G~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~ID 380 (854)
+|++ ++.+||||+||++||||||||||||+++. - .+ ++ .+ ++ +.|
T Consensus 146 ~i~~----~~~~dNfW~~G~~GpcGPcsEi~~d~g~~---~----~~-~~-----------------~~----~~--~~~ 190 (865)
T PRK00252 146 RIIR----IGKKDNFWSMGDTGPCGPCSEIFYDRGEE---Y----WG-GP-----------------PG----SP--EED 190 (865)
T ss_pred Heec----CCccCCccccCCCcCCCCCeEEEEecCcc---c----CC-CC-----------------CC----CC--cCC
Confidence 7764 46899999999999999999999997431 0 00 00 00 11 112
Q ss_pred CCCchhhhHHhhhCCCCCccccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCC
Q psy16314 381 CGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 460 (854)
Q Consensus 381 TGmGlERl~~ilqg~~SnYdtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~ 460 (854)
-+|.++|||-|+++|+-+ .+
T Consensus 191 ----~~~~lEiwNlVF~q~~~~--------------------------------------------------------~~ 210 (865)
T PRK00252 191 ----GDRYIEIWNLVFMQFNRD--------------------------------------------------------ED 210 (865)
T ss_pred ----CCcEEEEeeeeeEeeeec--------------------------------------------------------CC
Confidence 368888999888887531 12
Q ss_pred CCCCcCCccccccCCCHHHHHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCC
Q psy16314 461 RGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPD 540 (854)
Q Consensus 461 ~~l~~L~~~~iDtGmGlERL~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 540 (854)
+.|.|||+++||||||||||++|||+++||||||+|.|
T Consensus 211 g~~~~Lp~~~iDTG~GlER~~~ilq~~~snydtd~f~~------------------------------------------ 248 (865)
T PRK00252 211 GNLTPLPKKNIDTGMGLERIAAVLQGVHSNYETDLFRP------------------------------------------ 248 (865)
T ss_pred CceeeCCCCeeecCcCHHHHHHHHcCCCCcchhhhHHH------------------------------------------
Confidence 36899999999999999999999999999999999975
Q ss_pred CCCCCCCCcccccchhhhHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHHHH
Q psy16314 541 NTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620 (854)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~RvIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~~~ 620 (854)
+ +.+| .+..|.
T Consensus 249 -------------------~--------------------------i~~i--------~~~~~~---------------- 259 (865)
T PRK00252 249 -------------------L--------------------------IKAI--------EELTGV---------------- 259 (865)
T ss_pred -------------------H--------------------------HHHH--------HHHhCC----------------
Confidence 0 0000 000000
Q ss_pred HHhcCCCCccccccccCHHHHHHHHHcCCCCCCCCCccccCCCCCCCCCCccccccceeEEEEEeeCCeeeeeccCCCee
Q psy16314 621 LLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEA 700 (854)
Q Consensus 621 ~~~~~~~~~l~dt~g~~~~~~~~l~~~~~~~t~d~~~y~~~~~~~~t~F~GYe~~~~~a~Vlai~~dg~~V~~~~~G~~~ 700 (854)
.|. +
T Consensus 260 --------------------------------------------------~y~-------------~------------- 263 (865)
T PRK00252 260 --------------------------------------------------KYE-------------D------------- 263 (865)
T ss_pred --------------------------------------------------CCC-------------C-------------
Confidence 010 0
Q ss_pred EEEeecccccccCCCccccceEEEccCcceeeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhhhhhHh
Q psy16314 701 GILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAV 780 (854)
Q Consensus 701 ~vvLD~TpFYaEsGGQvgDtG~I~~~~~~~~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~IRRa~ 780 (854)
| -.++| |.|-. ..+.+|++||..|+|.+ +||+|||+||||+
T Consensus 264 ------------------~--------~a~rv-------iaDH~----R~~~f~i~DG~~Psn~g--rgYvlRrilRRa~ 304 (865)
T PRK00252 264 ------------------D--------VSFRV-------IADHI----RAVAFLIADGVLPSNEG--RGYVLRRILRRAV 304 (865)
T ss_pred ------------------C--------ceEEE-------EcchH----HHHHHHHccCcccCCCC--cchHHHHHHHHHH
Confidence 0 01111 12211 12457889999999975 9999999999999
Q ss_pred hhhhhhcCCCCccchhhHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16314 781 RYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNESHLA 849 (854)
Q Consensus 781 R~~~~~Lg~~~~~L~~LV~~~i~~l~~~yPEl~~~kd~I~~iL~~EE~kF~~TL~kG~~i~~k~~~~~~ 849 (854)
||+ ++||++.+||++||+.+++.|++.||||.+.++.|.++|+.||++|.+||++|.++|++++++.+
T Consensus 305 r~~-~~lg~~~~~l~~lv~~~~~~~~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~~ 372 (865)
T PRK00252 305 RHG-RLLGIKEPFLYKLVPVVIDEMGDAYPELKEKQDLIEKVLKAEEERFLKTLERGLKLLEEALAKLK 372 (865)
T ss_pred HHH-HHhCCCchHHHHHHHHHHHHHhhhChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999 89999999999999999999999999999999999999999999999999999999999998764
No 16
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=100.00 E-value=9.2e-74 Score=660.15 Aligned_cols=359 Identities=45% Similarity=0.696 Sum_probs=256.4
Q ss_pred ccccccc-cCCeeecCcCCCCCCCCccccccccCCCceeeccCcC-CCCCcccccceeccchhhhhcCCCCCCCCccccc
Q psy16314 155 SFGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTV-DPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKD 232 (854)
Q Consensus 155 ~fld~fk-k~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~-~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d 232 (854)
+|++||+ ++|++|||||+||+||+|||||||||+||||||+|.. .| +..|+|++|||||+||||||||+||+|
T Consensus 5 ~fl~fF~~~gH~~v~s~~lvp~~d~~llf~~Agm~~fkp~f~g~~~~p-----~~~r~~~~Q~CiR~~GkhnDld~VG~t 79 (552)
T PF01411_consen 5 KFLDFFEKKGHTIVPSSSLVPRWDPTLLFTNAGMNQFKPYFLGGEVPP-----PANRLVSSQKCIRTGGKHNDLDNVGRT 79 (552)
T ss_dssp HHHHHHHTTT-EEE----SS-TT-TTBSS--SGGGGGCCCCTTSSS-------SSSCEEEEEEEE-EETTEECGGGTTTS
T ss_pred HHHHHHHHCCCEEeccCCcccCCCCCceeeHhhHHHHHHHhcCCCCCC-----CCCcccccceeeccCCCcchhhhcCCC
Confidence 5789996 6899999999999999999999999999999999977 33 568999999999999999999999999
Q ss_pred chhhhcccccCCCcccCCCCCcce--------eecCcccCCCCCccccccccCCCCCCccccCCCchhhhhc-----CCc
Q psy16314 233 VYHHTFFEILPESHIIPGSMKDNF--------WEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKAD-----LLP 299 (854)
Q Consensus 233 ~wH~TffeMlgn~~i~~f~~~DnF--------We~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~-----~~~ 299 (854)
.||||||||||| |||+||| |++++.....|-.+|+ .+++..|++++..| ++.
T Consensus 80 ~rH~T~FEMlGn-----~sfgdYfK~eai~~awe~lt~~l~i~~~~l~----------vt~~~~d~ea~~~w~~~~g~~~ 144 (552)
T PF01411_consen 80 GRHHTFFEMLGN-----FSFGDYFKEEAIEYAWEFLTEVLGIPPDRLY----------VTVFEWDGEAGEIWEKIVGGPE 144 (552)
T ss_dssp SS--SEEEEEEE-----EEECSS-HHHHHHHHHHHHHCTTT--GGGEE----------EEEECCECCCCCCCCECCTTEC
T ss_pred ceEeeehhhccc-----cccccccHHHHHHHHHHHHHhhcCCChHhEE----------EEEeCCchhHHHHHHHhcCCCH
Confidence 999999999999 6888999 9999865544444444 45555666666543 333
Q ss_pred chhhhhhccccccccccccCCCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCC
Q psy16314 300 SKLTRLENQRSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHI 379 (854)
Q Consensus 300 ~~i~~~~~~~~~kdNfW~~G~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~I 379 (854)
.++++ ++.++|||+||++||||||||||||++. |.+. ..+.+ +|
T Consensus 145 ~~i~~----~~~~~nfw~~g~~gpcgpcseI~~d~G~-----------------e~~~-------~~~~~----~~---- 188 (552)
T PF01411_consen 145 ERILV----FGKKDNFWEMGDTGPCGPCSEIFYDRGE-----------------ERGC-------WDSQG----TP---- 188 (552)
T ss_dssp CCEEE----E-CCEEEEESSTSEEEEEEEEEEEEEEC-----------------CCHH-------HHHHS----TS----
T ss_pred HHeEe----cCCCCceEECCCCCCCCCCEEEEECCCc-----------------ccCc-------ccccc----cc----
Confidence 45553 4678999999999999999999999742 1111 00111 11
Q ss_pred CCCCchhhhHHhhhCCCCCccccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCC
Q psy16314 380 DCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNT 459 (854)
Q Consensus 380 DTGmGlERl~~ilqg~~SnYdtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~ 459 (854)
+...+|+.+|||-++++|+-+.
T Consensus 189 --~~~~~~~~eiwn~vf~q~~~~~-------------------------------------------------------- 210 (552)
T PF01411_consen 189 --TCDDDRFLEIWNLVFMQYNRDE-------------------------------------------------------- 210 (552)
T ss_dssp --SHHHHHECCCCCCCCCEEEETT--------------------------------------------------------
T ss_pred --ccccccHHHHHHHHHHHhcccc--------------------------------------------------------
Confidence 1224788888888777775421
Q ss_pred CCCCCcCCccccccCCCHHHHHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCC
Q psy16314 460 GRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRP 539 (854)
Q Consensus 460 ~~~l~~L~~~~iDtGmGlERL~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~ 539 (854)
.+.+.|||+++|||||||||++++||++.|||+||+|.+ +. +
T Consensus 211 ~g~~~~L~~~~idtGmgler~~~~lq~~~s~~~tdlf~~----------------i~-------~--------------- 252 (552)
T PF01411_consen 211 DGSLEPLPKKNIDTGMGLERLAAVLQGVRSNYDTDLFMP----------------II-------E--------------- 252 (552)
T ss_dssp TSHCCCCCCCCCCCCEEHHHHCHHHCCHCCHHHCHHTCH----------------HH-------H---------------
T ss_pred ccccccccchhhhcCCCcHHHHHHHhhhhhhhchhhhhh----------------HH-------H---------------
Confidence 135899999999999999999999999999999999985 00 0
Q ss_pred CCCCCCCCCcccccchhhhHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHHH
Q psy16314 540 DNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDL 619 (854)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~RvIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~~ 619 (854)
..+.+ .+.
T Consensus 253 -----------------~i~~~----------------------------------------~~~--------------- 260 (552)
T PF01411_consen 253 -----------------AIEEL----------------------------------------SGV--------------- 260 (552)
T ss_dssp -----------------HHHHH----------------------------------------HC----------------
T ss_pred -----------------HHHHH----------------------------------------cCC---------------
Confidence 00000 000
Q ss_pred HHHhcCCCCccccccccCHHHHHHHHHcCCCCCCCCCccccCCCCCCCCCCccccccceeEEEEEeeCCeeeeeccCCCe
Q psy16314 620 LLLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTE 699 (854)
Q Consensus 620 ~~~~~~~~~~l~dt~g~~~~~~~~l~~~~~~~t~d~~~y~~~~~~~~t~F~GYe~~~~~a~Vlai~~dg~~V~~~~~G~~ 699 (854)
+| .. ...
T Consensus 261 -------------------------------------~y--~~---~~~------------------------------- 267 (552)
T PF01411_consen 261 -------------------------------------PY--KD---EEE------------------------------- 267 (552)
T ss_dssp --------------------------------------T--TS---SCC-------------------------------
T ss_pred -------------------------------------Cc--cc---ccc-------------------------------
Confidence 00 00 000
Q ss_pred eEEEeecccccccCCCccccceEEEccCcceeeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhhhhhH
Q psy16314 700 AGILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRA 779 (854)
Q Consensus 700 ~~vvLD~TpFYaEsGGQvgDtG~I~~~~~~~~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~IRRa 779 (854)
..+ .+.| |.|-. ..+.+|++||..|+|++ +||+||++||||
T Consensus 268 -----~~~---------------------a~rv-------IaDH~----Ra~~f~i~DGv~PsN~G--rGYvlRriiRRa 308 (552)
T PF01411_consen 268 -----IDV---------------------ALRV-------IADHI----RALTFAIADGVLPSNEG--RGYVLRRIIRRA 308 (552)
T ss_dssp -----CHH---------------------HHHH-------HHHHH----HHHHHHHHTT--SSSSH--HHHHHHHHHHHH
T ss_pred -----ccc---------------------EEEE-------Ecchh----hceeeEecCCeeecccC--CcchHHHHHHHH
Confidence 000 0000 01100 01236678889999975 999999999999
Q ss_pred hhhhhhhcCCCCccchhhHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy16314 780 VRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNESHLAQ 850 (854)
Q Consensus 780 ~R~~~~~Lg~~~~~L~~LV~~~i~~l~~~yPEl~~~kd~I~~iL~~EE~kF~~TL~kG~~i~~k~~~~~~~ 850 (854)
+|++ ++||++.+||++||+.+++.|++.||||.++++.|.++|..||++|.+||++|.++|++.++++++
T Consensus 309 ~r~~-~~lg~~~~fl~~lv~~vi~~~~~~ypel~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~ 378 (552)
T PF01411_consen 309 VRFG-RKLGIEEPFLYELVPVVIESMGDFYPELKENKDYIKDIIKEEEERFLKTLERGLKLLEKLIKKLKK 378 (552)
T ss_dssp HHHH-HHTT-SS--HHHHHHHHHHHHTTTGTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-HHhCCCccchHHHHHHHHHHhhccChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999 899999999999999999999999999999999999999999999999999999999999998763
No 17
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.4e-65 Score=587.26 Aligned_cols=357 Identities=30% Similarity=0.518 Sum_probs=277.0
Q ss_pred ccccccc-cCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccc
Q psy16314 155 SFGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDV 233 (854)
Q Consensus 155 ~fld~fk-k~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~ 233 (854)
+|++||+ |+|+++||||+||.||+|||||||||+||||||+|.++|+ ..|++|||||||+ ||||+|| +.
T Consensus 9 ~fl~FF~~kgH~~~~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~-----~~r~~~~QkCiR~----~Dle~VG-~~ 78 (594)
T PRK01584 9 KYIDFFKSKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLGEPHPS-----GTRLVDVQKCLRT----GDIDEVG-DL 78 (594)
T ss_pred HHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----ccccccC-CC
Confidence 5789996 6899999999999999999999999999999999987764 4799999999999 7999999 78
Q ss_pred hhhhcccccCCCcccCCCCCcce--------eecCccc--CCCCCccccccccCCCCCCccccCCCchhhhhc----CCc
Q psy16314 234 YHHTFFEILPESHIIPGSMKDNF--------WEMGETG--PCGPCSELHYDRIGGGRNAADLVNQDDPAYKAD----LLP 299 (854)
Q Consensus 234 wH~TffeMlgn~~i~~f~~~DnF--------We~g~~g--pcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~----~~~ 299 (854)
+|||||||||| |||+||| ||++|.. ...|-..|+.....++.. +++|+|+++.| +.+
T Consensus 79 rHhTfFEMlGn-----fSfgdYfK~eai~~awe~lt~~~~l~l~~~rl~vTv~~~~~~----~~~D~Ea~~iW~~~g~~~ 149 (594)
T PRK01584 79 SHLTFFEMLGN-----WSLGAYFKEESIKYSFEFLTSPDYLNIPKDKLYVTVFEGDEE----IPRDEETASVWESLGIPK 149 (594)
T ss_pred cchhHHHhhcc-----ccHhhhhHHHHHHHHHHHhccchhcCCCHHHeEEEEeCCCCC----CCCCHHHHHHHHHcCCCH
Confidence 99999999999 6889999 9999864 444544554443332111 35699998866 566
Q ss_pred chhhhhhcccccccccc-ccCCCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCC
Q psy16314 300 SKLTRLENQRSMKDNFW-EMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKH 378 (854)
Q Consensus 300 ~~i~~~~~~~~~kdNfW-~~G~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~ 378 (854)
++|++ ++.+|||| +||++||||||||||||+++. . + .+++ .|.
T Consensus 150 ~rI~~----~~~~dNfW~~~G~~GPCGPcsEI~~d~g~~---~-~-~~~~-------------------------~~~-- 193 (594)
T PRK01584 150 DRIFY----LSREHNWWGPVGETGPCGPDTEIFVDTGKP---K-C-SVNC-------------------------RPT-- 193 (594)
T ss_pred HHeee----CCCCCCcccccCCCcCCCCceEEEEecCCc---c-c-cccc-------------------------CCC--
Confidence 67764 35789999 799999999999999997431 0 0 0000 111
Q ss_pred CCCCCchhhhHHhhhCCCCCccccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCC
Q psy16314 379 IDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDN 458 (854)
Q Consensus 379 IDTGmGlERl~~ilqg~~SnYdtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~ 458 (854)
. ..+|.++|||.|+++|+-+
T Consensus 194 ~----~~~r~lEiwNlVFmq~~~~-------------------------------------------------------- 213 (594)
T PRK01584 194 C----SCGKYFEIWNNVFMQYNKD-------------------------------------------------------- 213 (594)
T ss_pred C----CCCceEEEeeeeeeeeeec--------------------------------------------------------
Confidence 1 2468888999988887531
Q ss_pred CCCCCCcCCccccccCCCHHHHHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCC
Q psy16314 459 TGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGR 538 (854)
Q Consensus 459 ~~~~l~~L~~~~iDtGmGlERL~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ 538 (854)
.++.|.|||+++||||||||||++|||+++||||||+|.| +.+
T Consensus 214 ~~g~~~~Lp~k~IDTGmGLERl~~vlqg~~s~ydtdlf~p-----------------------ii~-------------- 256 (594)
T PRK01584 214 EDGNYEELKRKCVDTGMGIERTIAFLQGKSSVYDTEAFTP-----------------------IIK-------------- 256 (594)
T ss_pred CCCccccCCCCceeCCcCHHHHHHHHcCCCCccchhhhHH-----------------------HHH--------------
Confidence 0235899999999999999999999999999999999985 000
Q ss_pred CCCCCCCCCCcccccchhhhHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHH
Q psy16314 539 PDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVD 618 (854)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~RvIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~ 618 (854)
.|+ +..|.
T Consensus 257 ---------------------~i~-------------------------------------~~~~~-------------- 264 (594)
T PRK01584 257 ---------------------RIE-------------------------------------KISGK-------------- 264 (594)
T ss_pred ---------------------HHH-------------------------------------HHhCC--------------
Confidence 000 00000
Q ss_pred HHHHhcCCCCccccccccCHHHHHHHHHcCCCCCCCCCccccCCCCCCCCCCccccccceeEEEEEeeCCeeeeeccCCC
Q psy16314 619 LLLLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGT 698 (854)
Q Consensus 619 ~~~~~~~~~~~l~dt~g~~~~~~~~l~~~~~~~t~d~~~y~~~~~~~~t~F~GYe~~~~~a~Vlai~~dg~~V~~~~~G~ 698 (854)
+ |.... .
T Consensus 265 --------------------------------------~--------------y~~~~--------------------~- 271 (594)
T PRK01584 265 --------------------------------------I--------------YGQNE--------------------E- 271 (594)
T ss_pred --------------------------------------C--------------cCCCC--------------------C-
Confidence 0 10000 0
Q ss_pred eeEEEeecccccccCCCccccceEEEccCcceeeeecceeeeeeEEEcCCCceEEEecC--CCCCCCCCCCcchhhhhhh
Q psy16314 699 EAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFG--GHEPAGLEPDLDYVLRRIL 776 (854)
Q Consensus 699 ~~~vvLD~TpFYaEsGGQvgDtG~I~~~~~~~~v~~~~~~~v~d~~k~~~~~~~vml~d--g~~psg~~~~~GY~lR~~I 776 (854)
.+-.++| |.|-. ..+.+|++| |..|+|.+ +||+|||+|
T Consensus 272 ---------------------------~~~a~rv-------IaDH~----R~~~f~i~D~~Gv~PsN~g--rGYvlRril 311 (594)
T PRK01584 272 ---------------------------DDRSIRI-------IADHI----RAACFILGDPFVVLPSNVG--QGYVLRRLI 311 (594)
T ss_pred ---------------------------CceeEEE-------EecHH----HHHHHHhhcccCCCCCCCC--CchHHHHHH
Confidence 0001111 12211 124578888 89999964 999999999
Q ss_pred hhHhhhhhhhcCCCCccchhhHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16314 777 RRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNESHLA 849 (854)
Q Consensus 777 RRa~R~~~~~Lg~~~~~L~~LV~~~i~~l~~~yPEl~~~kd~I~~iL~~EE~kF~~TL~kG~~i~~k~~~~~~ 849 (854)
|||+||+ ++||++.+||++||+.+++.|++.||||.++++.|.++|+.||++|.+||++|.+++++.+++++
T Consensus 312 RRa~r~~-~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~~i~~~~ 383 (594)
T PRK01584 312 RRSIRHA-KKLGIESHFLADLVDSVEEIYGSFYPELTEKKDFIKEELNKEEEKFFKTLRKGEQEFIKLIPNLG 383 (594)
T ss_pred HHHHHHH-HHhCCCchhHHHHHHHHHHHHhhhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999 68999999999999999999999999999999999999999999999999999999999998764
No 18
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=3.4e-64 Score=604.71 Aligned_cols=356 Identities=25% Similarity=0.421 Sum_probs=244.5
Q ss_pred ccccccc-cCCeeecCcCCCCCCCCccccccccCCCceeecc-CcCCCCCcccccceeccchhhhhcCCCCCCCCccccc
Q psy16314 155 SFGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFL-GTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKD 232 (854)
Q Consensus 155 ~fld~fk-k~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~-G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d 232 (854)
+|++||+ ++|++|||||+||+|+.+||||||||+||||||+ |.++||. .|+|+||||||+ ||||+||+|
T Consensus 64 ~fl~FF~~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp~-----~r~~~sQkCiR~----nDldnVG~t 134 (902)
T TIGR03683 64 AFLSFFEKHGHTRIKRYPVVARWRDDVYLTIASIADFQPWVTSGLVPPPA-----NPLVISQPCIRL----NDIDNVGRT 134 (902)
T ss_pred HHHHHHHhCCCEEeCCcCcCcCCCCCeeEeecchhhhhHhhcCCCCCCCC-----CCceeccccccc----cccccccCC
Confidence 5789996 6899999999999999999999999999999997 9887744 689999999999 899999999
Q ss_pred chhhhcccccCCCcccCCCCC-----cceeecCcccCCCCCccccccccCCCCCCccccCCCchhhhhcCCcchhhhhhc
Q psy16314 233 VYHHTFFEILPESHIIPGSMK-----DNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLEN 307 (854)
Q Consensus 233 ~wH~TffeMlgn~~i~~f~~~-----DnFWe~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~~~~~~i~~~~~ 307 (854)
.|||||||||||| ||+ ||| .--+ +..|-|+. +.++
T Consensus 135 ~rH~TfFEMlGn~-----sFg~~~~~dYf-K~Ea---I~~a~e~l-~~lg------------------------------ 174 (902)
T TIGR03683 135 GRHLTCFEMMAHH-----AFNYPDKEIYW-KDET---VEYCFEFL-EELG------------------------------ 174 (902)
T ss_pred CCcchhhhhccce-----eeCCCCcccCc-HHHH---HHHHHHHH-HHcC------------------------------
Confidence 9999999999994 555 554 2111 11122222 2222
Q ss_pred cccccccccccCCCCCCCCCCcccccc--cC-CCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCCCCCCc
Q psy16314 308 QRSMKDNFWEMGETGPCGPCSELHYDR--IG-GGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMG 384 (854)
Q Consensus 308 ~~~~kdNfW~~G~~GpcGPCtEI~yd~--~~-~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~IDTGmG 384 (854)
-|..+|.|.. .. +|+++ -..||- . + |
T Consensus 175 -----------------i~~~~i~~~enfW~~GGpcG---------PcsEi~----~---~------------------g 203 (902)
T TIGR03683 175 -----------------IDPEEITYKESPWEGGGNAG---------PCFEVI----V---G------------------G 203 (902)
T ss_pred -----------------CCHHHeeecCCccCCCCCCC---------Cceeee----e---C------------------c
Confidence 0223333321 01 13221 125652 1 1 2
Q ss_pred hhhhHHhhhCCCCCccccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCCCCCC
Q psy16314 385 FERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLK 464 (854)
Q Consensus 385 lERl~~ilqg~~SnYdtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~~~l~ 464 (854)
++|||-|+++|+.+. ..+|. -.++.|.
T Consensus 204 ----lEiwnlVFmq~~~~~-------------~~~~~------------------------------------~~~g~~~ 230 (902)
T TIGR03683 204 ----LELATLVFMQYEEDK-------------EGEIE------------------------------------IKGGRYS 230 (902)
T ss_pred ----Eeeeeeeeeeecccc-------------ccccc------------------------------------cCCCeee
Confidence 468898888886531 00110 0134699
Q ss_pred cCCccccccCCCHHHHHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCCCCCC
Q psy16314 465 PLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGR 544 (854)
Q Consensus 465 ~L~~~~iDtGmGlERL~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 544 (854)
|||+++||||||||||++|+|+++||||| +|.+ .|+++-+
T Consensus 231 ~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~---------------ii~~i~~------------------------ 270 (902)
T TIGR03683 231 EMPLKIVDTGYGLERFVWASQGTPTAYDA-IFPE---------------IVDKLKE------------------------ 270 (902)
T ss_pred eCCCCceecCCCHHHHHHHHcCCCchHHH-HHHH---------------HHHHHHH------------------------
Confidence 99999999999999999999999999999 9985 1111100
Q ss_pred CCCCcccccchhhhHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChh-hhHHHHHHHHHHHHHh
Q psy16314 545 GVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPR-LFSSLVNTVVDLLLLS 623 (854)
Q Consensus 545 ~~~~~~~~~~~~~~RvIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~-fl~~Lv~~vv~~~~~~ 623 (854)
.+ |+ .|.--.+++++.+++ .+++.+.. =+..+-..
T Consensus 271 -------------------~~---------g~-------~y~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~-------- 306 (902)
T TIGR03683 271 -------------------NA---------GV-------ELIDEEILAENARLA-GMMDIEDEEDLRELRKK-------- 306 (902)
T ss_pred -------------------Hh---------CC-------Ccccchhhhhhhhhc-cccCccccchhhHHhhh--------
Confidence 00 11 011112667777775 35554332 01000000
Q ss_pred cCCCCccccccccCHHHHHHHHHcCCCCCCCCCccccCCCCCCCCCCccccccceeEEEEEeeCCeeeeeccCCCeeEEE
Q psy16314 624 QGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGIL 703 (854)
Q Consensus 624 ~~~~~~l~dt~g~~~~~~~~l~~~~~~~t~d~~~y~~~~~~~~t~F~GYe~~~~~a~Vlai~~dg~~V~~~~~G~~~~vv 703 (854)
+-+.+|++.+.++++ +.+-....||
T Consensus 307 ------~a~~~~~~~~~~~~~-------------------------------------------------~~~~~~~rvI 331 (902)
T TIGR03683 307 ------VADKIGIDVEELEKI-------------------------------------------------IAPVERIYAI 331 (902)
T ss_pred ------hhhhcccchhhhhhh-------------------------------------------------ccccceEEEE
Confidence 111223332221110 0000112233
Q ss_pred eecccccccCCCccccceEEEccCcceeeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhhhhhHhhhh
Q psy16314 704 LDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYG 783 (854)
Q Consensus 704 LD~TpFYaEsGGQvgDtG~I~~~~~~~~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~IRRa~R~~ 783 (854)
.|.| ..+.+|++||..|+|++ +||+|||+||||+||+
T Consensus 332 aDH~-----------------------------------------R~~~f~i~DGv~PsN~g--rGYvlRrilRRa~r~~ 368 (902)
T TIGR03683 332 ADHT-----------------------------------------RCLAFMLGDGIVPSNVK--EGYLARLVIRRTLRLM 368 (902)
T ss_pred cchH-----------------------------------------HHHHHHHhcCCccCCCC--cchHHHHHHHHHHHHH
Confidence 2221 12458899999999975 9999999999999999
Q ss_pred hhhcCCCCccchhhHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16314 784 TEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNESH 847 (854)
Q Consensus 784 ~~~Lg~~~~~L~~LV~~~i~~l~~~yPEl~~~kd~I~~iL~~EE~kF~~TL~kG~~i~~k~~~~ 847 (854)
++||++.+ |++||+++++.|++.||||.++++.|.++|+.||++|.+||++|.++|++++++
T Consensus 369 -~~lg~~~~-l~~lv~~~~~~~~~~ypel~~~~~~I~~ii~~Ee~~f~~Tl~~G~~~~~~~~~~ 430 (902)
T TIGR03683 369 -RELGLDIP-LSDLVEMQLEELKKIYPELKENKDYILDILDLEEEKYRETLERGRRIVERLLKT 430 (902)
T ss_pred -HHhCCCcc-HHHHHHHHHHHHhhhChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 79999999 999999999999999999999999999999999999999999999999999865
No 19
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=100.00 E-value=7.9e-56 Score=456.35 Aligned_cols=212 Identities=48% Similarity=0.795 Sum_probs=170.8
Q ss_pred ccccccc-cCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccc
Q psy16314 155 SFGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDV 233 (854)
Q Consensus 155 ~fld~fk-k~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~ 233 (854)
+|++||+ |+|++++|||+||++|+|||||||||+||||||+|++.| ++.|++++|||||+ ||+|+||+|.
T Consensus 7 ~fl~FF~~kgH~~v~s~slvp~dDptllFtnAGM~~Fkp~f~G~~~p-----~~~r~~~~QkCiR~----~DienVG~t~ 77 (232)
T cd00673 7 TFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPP-----PANRLVNSQKCIRA----GDIDNVGKTG 77 (232)
T ss_pred HHHHHHHhCCCEEeCCCCcCCCCCCchheeccchhhhhHHhcCCCCC-----CCCceeeeeeceec----CChhhccccc
Confidence 4788996 789999999999999999999999999999999998766 45899999999999 7999999999
Q ss_pred hhhhcccccCCCcccCCCCCcce--------eecCcccCCCCCccccccccCCCCCCccccCCCchhhhhc-----CCcc
Q psy16314 234 YHHTFFEILPESHIIPGSMKDNF--------WEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKAD-----LLPS 300 (854)
Q Consensus 234 wH~TffeMlgn~~i~~f~~~DnF--------We~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~-----~~~~ 300 (854)
+|||||||||| |||+||| ||++|... +|..+++. +|++..|||++..| +.+.
T Consensus 78 rHhTfFEMLGN-----fSFgdYFK~eaI~~awe~LT~~l-----~l~~~rl~-----vTv~~~dde~~~~w~~~~g~~~~ 142 (232)
T cd00673 78 RHHTFFEMLGN-----FSFGDYFKEEAIAFAWELLTEVL-----GLPKDRLY-----VSVFEGDDEEEAIWWWKIGLPGI 142 (232)
T ss_pred cchhhhhhhcc-----cchhhhhHHHHHHHHHHHHHhhc-----CCCccceE-----EEEeCCCHHHHHHHHHhhCCCHH
Confidence 99999999999 7889998 99997643 34445553 78888899987643 3455
Q ss_pred hhhhhhccccccccccccCCCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCCC
Q psy16314 301 KLTRLENQRSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHID 380 (854)
Q Consensus 301 ~i~~~~~~~~~kdNfW~~G~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~ID 380 (854)
+|.+ ++.+||||+||++|||||||||||| +.. ..++++ ++ +.|
T Consensus 143 ~i~~----~~~~dNfW~~G~~GPCGPcsEI~yd----~g~-----~~~~~~----------------------~~--~~~ 185 (232)
T cd00673 143 RIER----IGFKDNFWEMGGNGPCGPCSEIFYD----RGE-----ERDAAS----------------------LP--NED 185 (232)
T ss_pred Heee----CCccCCCCCCCCCcCCCCCEEEEEc----cCC-----CcCccc----------------------cc--cCC
Confidence 6654 4678999999999999999999998 211 001100 11 123
Q ss_pred CCCchhhhHHhhhCCCCCccccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCC
Q psy16314 381 CGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 460 (854)
Q Consensus 381 TGmGlERl~~ilqg~~SnYdtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~ 460 (854)
.+|+++|||.|..+|+.+ .+
T Consensus 186 ----~~r~lEIWNlVFmqy~r~--------------------------------------------------------~~ 205 (232)
T cd00673 186 ----DDRYLEIWNLVFMQYNRD--------------------------------------------------------AD 205 (232)
T ss_pred ----CCCEEEEeeeeeeeeecc--------------------------------------------------------CC
Confidence 368999999888777531 02
Q ss_pred CCCCcCCccccccCCCHHHHHHHhhcc
Q psy16314 461 RGLKPLPKKHIDCGMGFERLVSIIQDK 487 (854)
Q Consensus 461 ~~l~~L~~~~iDtGmGlERL~~ilq~~ 487 (854)
+.|.|||+|+||||||||||++|||++
T Consensus 206 g~l~pLp~k~IDTGmGlERla~vlQg~ 232 (232)
T cd00673 206 GTYRPLPKKIVDTGMGLERLVWVLQGV 232 (232)
T ss_pred CCCccCCCCeeeCCcCHHHHHHHHcCC
Confidence 368999999999999999999999985
No 20
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.8e-55 Score=525.63 Aligned_cols=346 Identities=27% Similarity=0.459 Sum_probs=244.1
Q ss_pred ccccccc-cCCeeecCcCCCCCCCCccccccccCCCceeecc-CcCCCCCcccccceeccchhhhhcCCCCCCCCccccc
Q psy16314 155 SFGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFL-GTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKD 232 (854)
Q Consensus 155 ~fld~fk-k~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~-G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d 232 (854)
+|++||+ ++|++|+|+|+||+|+.+||||||||+||||||+ |.++|| ..|+|+||||||+ ||||+||+|
T Consensus 67 ~Fl~FF~~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp-----~~~~~~sQ~CiR~----nDldnVG~t 137 (900)
T PRK13902 67 KFLSFFEKHGHTRIERYPVVARWRDDVYLTIASIYDFQPWVTSGLVPPP-----ANPLVISQPCIRL----NDIDNVGRT 137 (900)
T ss_pred HHHHHHHhCCCEEcCCcCcCCCCCCCeeeeecchhhhhHHhcCCCCCCC-----CCCceecccccch----hhhhhcccc
Confidence 5789996 6899999999999999999999999999999998 988774 4689999999999 899999999
Q ss_pred chhhhcccccCCCcccCCCCC-----cce--------eecCcccCCCCCccccccccCCCCCCccccCCCchhhhhcCCc
Q psy16314 233 VYHHTFFEILPESHIIPGSMK-----DNF--------WEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLP 299 (854)
Q Consensus 233 ~wH~TffeMlgn~~i~~f~~~-----DnF--------We~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~~~~ 299 (854)
.|||||||||||| ||+ ||| ||++|. .++ +
T Consensus 138 ~rH~T~FEMlGn~-----sFg~~~~~~YfK~eaI~~a~e~lt~------------~lg-------------------i-- 179 (900)
T PRK13902 138 GRHLTSFEMMAHH-----AFNYPDKEVYWKDETVEYCFEFFTK------------ELG-------------------I-- 179 (900)
T ss_pred CCchhhhhhccce-----eeCCCCcccccHHHHHHHHHHHHHh------------hcC-------------------C--
Confidence 9999999999994 555 665 444432 111 0
Q ss_pred chhhhhhccccccccccccCCCCCCCCCCcccccc--cC-CCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCC
Q psy16314 300 SKLTRLENQRSMKDNFWEMGETGPCGPCSELHYDR--IG-GGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPK 376 (854)
Q Consensus 300 ~~i~~~~~~~~~kdNfW~~G~~GpcGPCtEI~yd~--~~-~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~ 376 (854)
|-.+|.|.. .. +|+++ -..||- . +
T Consensus 180 --------------------------~~~~I~~~enfW~~GGpcG---------PcsEi~----~---~----------- 206 (900)
T PRK13902 180 --------------------------DPEEITFKESWWEGGGNAG---------PCFEVL----V---R----------- 206 (900)
T ss_pred --------------------------CHHHeeecccccCCCCCCC---------Cceeee----e---C-----------
Confidence 002333321 01 13221 125652 1 1
Q ss_pred CCCCCCCchhhhHHhhhCCCCCccccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCC
Q psy16314 377 KHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRP 456 (854)
Q Consensus 377 k~IDTGmGlERl~~ilqg~~SnYdtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p 456 (854)
| ++|||-|+++|+.+
T Consensus 207 -------g----lEiwnlVFmqy~~~------------------------------------------------------ 221 (900)
T PRK13902 207 -------G----LELATLVFMQYKKD------------------------------------------------------ 221 (900)
T ss_pred -------C----EEeeeeeeeEEEcC------------------------------------------------------
Confidence 2 35677766666431
Q ss_pred CCCCCCCCcCCccccccCCCHHHHHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCC
Q psy16314 457 DNTGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADG 536 (854)
Q Consensus 457 ~~~~~~l~~L~~~~iDtGmGlERL~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 536 (854)
++.|.|||+++||||||||||++|+|+++||||| +|.+ .|++ +
T Consensus 222 ---~g~~~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~---------------ii~~----i-------------- 264 (900)
T PRK13902 222 ---GNRYVEMPLKIVDTGYGLERIAWASQGTPTAYDA-IFGE---------------LVDK----L-------------- 264 (900)
T ss_pred ---CCeeeeCCCCeeeCCcCHHHHHHHHcCCCchHHH-HHHH---------------HHHH----H--------------
Confidence 2358999999999999999999999999999999 9985 1111 1
Q ss_pred CCCCCCCCCCCCcccccchhhhHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCCh-hhhHHHHHH
Q psy16314 537 GRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKP-RLFSSLVNT 615 (854)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~RvIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~-~fl~~Lv~~ 615 (854)
.+.+ |+ .|--..||+++.+++ .+++++. .-+..+-..
T Consensus 265 -------------------------~~~~---------g~-------~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~ 302 (900)
T PRK13902 265 -------------------------KENA---------GV-------EEPDEEILAEAARLA-GLMDIEEIEDLRSLRQK 302 (900)
T ss_pred -------------------------HHHh---------CC-------Ccccchhhhhhhhhc-ccCCcccchhHHHHHHH
Confidence 0000 11 122223677777775 3455422 111111111
Q ss_pred HHHHHHHhcCCCCccccccccCHHHHHHHHHcCCCCCCCCCccccCCCCCCCCCCccccccceeEEEEEeeCCeeeeecc
Q psy16314 616 VVDLLLLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVS 695 (854)
Q Consensus 616 vv~~~~~~~~~~~~l~dt~g~~~~~~~~l~~~~~~~t~d~~~y~~~~~~~~t~F~GYe~~~~~a~Vlai~~dg~~V~~~~ 695 (854)
+. +..|++.+.++++ +.
T Consensus 303 ~a--------------~~~~~~~~~~~~~-------------------------------------------------~~ 319 (900)
T PRK13902 303 VA--------------KKLGIDVEELEEL-------------------------------------------------LE 319 (900)
T ss_pred HH--------------hhcccchhhhhhh-------------------------------------------------cc
Confidence 11 1123332222110 00
Q ss_pred CCCeeEEEeecccccccCCCccccceEEEccCcceeeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhh
Q psy16314 696 SGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRI 775 (854)
Q Consensus 696 ~G~~~~vvLD~TpFYaEsGGQvgDtG~I~~~~~~~~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~ 775 (854)
+-....||.|.| ..+.+|++||..|+|++ +||+|||+
T Consensus 320 ~~~~~~vIaDH~-----------------------------------------R~~~f~i~DGv~PsN~g--rGYvlRri 356 (900)
T PRK13902 320 PLEAIYAIADHT-----------------------------------------RTLAFMLGDGIVPSNVG--EGYLARLV 356 (900)
T ss_pred ccceEEEEecHH-----------------------------------------HHHHHHHhCCCcCCCCC--cchHHHHH
Confidence 111222333322 12458899999999975 99999999
Q ss_pred hhhHhhhhhhhcCCCCccchhhHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy16314 776 LRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNESHLAQCP 852 (854)
Q Consensus 776 IRRa~R~~~~~Lg~~~~~L~~LV~~~i~~l~~~yPEl~~~kd~I~~iL~~EE~kF~~TL~kG~~i~~k~~~~~~~~~ 852 (854)
||||+||+ .+||++.+ |++||+++++.|++.||||.++++.|.++|..||++|.+||++|.++|++++++++.+|
T Consensus 357 lRRa~r~~-~~lg~~~~-l~~lv~~~~~~~~~~ypel~~~~~~I~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~~~l~ 431 (900)
T PRK13902 357 IRRTLRLL-DELGLDVP-LSELVDMQIDELKEDYPELKENRDYILDIVDLEEEKYRETLERGKRIVERLAKKKEEIP 431 (900)
T ss_pred HHHHHHHH-HHhCCCcc-HHHHHHHHHHHHhhhChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999 79999999 99999999999999999999999999999999999999999999999999998765554
No 21
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=99.59 E-value=1.4e-15 Score=160.24 Aligned_cols=102 Identities=26% Similarity=0.330 Sum_probs=81.7
Q ss_pred ccceeEEEEEeeCCeeeeeccCCCeeEEEeecccccccCCCccccceEEEccCcceeeeecceeeeeeEEEcCCCceEEE
Q psy16314 675 EPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVT 754 (854)
Q Consensus 675 ~~~~a~Vlai~~dg~~V~~~~~G~~~~vvLD~TpFYaEsGGQvgDtG~I~~~~~~~~v~~~~~~~v~d~~k~~~~~~~vm 754 (854)
.+++++|+.+..+ .|+||+|+|||++||||||+|+|...++...+ .++.+. +..++|
T Consensus 13 ~e~~~~v~~v~~~-------------~i~ld~T~Fyp~~GGQp~D~G~l~~~~~~~~~--------~~~~~~--~~~I~H 69 (241)
T COG2872 13 KEFEATVVDVEDN-------------EIVLDRTIFYPTGGGQPGDTGTLIWAGGEYVV--------EDVTKD--GEEIVH 69 (241)
T ss_pred ccceEEEEEEeCC-------------eEEEEeccccCCCCCCcCCceEEEeCCceEEE--------EEEEec--ceEEEE
Confidence 4677888887621 79999999999999999999999999988655 444332 335566
Q ss_pred ecCCCCCCCCCCCcchhhhhhhhhHhhhhhhhcCCCCccchhhHHHHHH
Q psy16314 755 YFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVD 803 (854)
Q Consensus 755 l~dg~~psg~~~~~GY~lR~~IRRa~R~~~~~Lg~~~~~L~~LV~~~i~ 803 (854)
+.+.. +. +.+|-.++..|||.+||.+|++|+..|+|+.+++.+.+
T Consensus 70 ~~~~~-~~---~~vG~~V~~~IDW~rRy~~mr~HTa~Hlls~~~~~~~~ 114 (241)
T COG2872 70 VLAEH-AK---LKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYG 114 (241)
T ss_pred EecCc-cc---CCCCCEEEEEECcHHHHHHHhhhHHHHHHHHHhhcccc
Confidence 55443 22 35789999999999999999999999999999988777
No 22
>PLN02961 alanine-tRNA ligase
Probab=99.45 E-value=6.7e-14 Score=146.31 Aligned_cols=92 Identities=21% Similarity=0.248 Sum_probs=67.9
Q ss_pred eeEEEeecccccccCCCccccceEEEccCc--ceeeeecceeeeeeEEEcCCCceEEEecC--C--CCCCCCCCCcchhh
Q psy16314 699 EAGILLDKSNFYAEQGGQIYDEGFMIGVND--ELEVCTWAWELLTTVYKIPADRLYVTYFG--G--HEPAGLEPDLDYVL 772 (854)
Q Consensus 699 ~~~vvLD~TpFYaEsGGQvgDtG~I~~~~~--~~~v~~~~~~~v~d~~k~~~~~~~vml~d--g--~~psg~~~~~GY~l 772 (854)
.+.||||+|+||||+|||++|+|+|...++ .+.| .+|++ . ++.++|+.. + ..+.+. ...|-.+
T Consensus 2 ~~~viLd~T~FYpegGGQp~D~G~i~~~~~~~~~~V--------~~v~~-~-~g~i~H~~~~~~~~~~~~~~-l~~G~~V 70 (223)
T PLN02961 2 RIALVLDRTIFHPQGGGQPSDTGRIVISGGDTKFSV--------QDVRR-K-DGVVYHYGVFEGSNPESASP-FEAGDEV 70 (223)
T ss_pred CeEEEeCCceEcCCCCCCCCcEEEEEecCCCcEEEE--------EEEEE-E-CCEEEEEEEecCcccccCCC-CCCCCEE
Confidence 357999999999999999999999987443 3433 67776 3 345555531 1 001111 1357779
Q ss_pred hhhhhhHhhhhhhhcCCCCccchhhHHHH
Q psy16314 773 RRILRRAVRYGTEKLGAKPRLFSSLVNTV 801 (854)
Q Consensus 773 R~~IRRa~R~~~~~Lg~~~~~L~~LV~~~ 801 (854)
...|||.+|+.+|++|+..|+|+.++..+
T Consensus 71 ~~~ID~~rR~~~m~~HTa~HLL~~al~~~ 99 (223)
T PLN02961 71 TVTVDESRRKLHSRLHSAGHLLDVCMARV 99 (223)
T ss_pred EEEECHHHHhhhhccCcHHHHHHHHHHHc
Confidence 99999999999999999999998888753
No 23
>KOG2105|consensus
Probab=95.13 E-value=0.018 Score=62.69 Aligned_cols=84 Identities=17% Similarity=0.126 Sum_probs=58.7
Q ss_pred eEEEeecccccccCCCccccceEEEccCcceeeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhhhhhH
Q psy16314 700 AGILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRA 779 (854)
Q Consensus 700 ~~vvLD~TpFYaEsGGQvgDtG~I~~~~~~~~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~IRRa 779 (854)
+.+.|..|..+||+||||.|.|++..-+ | ....+. +-+.-++..++.. .|..+--..||.
T Consensus 44 ~~i~lqdtiLfpegggqp~d~gf~~~v~----V-------~~VsR~--G~~A~H~~~~~ie-------PGt~V~V~VD~q 103 (415)
T KOG2105|consen 44 YEIELQDTILFPEGGGQPSDSGFLKIVE----V-------SHVSRF--GLHAKHHVNDYIE-------PGTTVEVAVDEQ 103 (415)
T ss_pred ceeeeeeeEeccCCCCCCCcccccccee----E-------EEeecc--ccchhhccCCCCC-------CCCeEEEEecHH
Confidence 5799999999999999999999997422 2 111221 1122233344443 344566778999
Q ss_pred hhhhhhhcCCCCccchhhHHHHHH
Q psy16314 780 VRYGTEKLGAKPRLFSSLVNTVVD 803 (854)
Q Consensus 780 ~R~~~~~Lg~~~~~L~~LV~~~i~ 803 (854)
.|+-+|.-|+--|+++.+.+...+
T Consensus 104 kR~D~MQQHsGQHLitAvad~~fK 127 (415)
T KOG2105|consen 104 KRMDYMQQHSGQHLITAVADHLFK 127 (415)
T ss_pred HHhHHHHHhcchhHHHHHHHhhhc
Confidence 999999999999988888776554
No 24
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=89.37 E-value=1.2 Score=48.13 Aligned_cols=108 Identities=25% Similarity=0.279 Sum_probs=58.3
Q ss_pred CCCHHHHHHHhhccCCccccccccC-----C------CCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCCCC
Q psy16314 474 GMGFERLVSIIQDKRSNYDTDVFGT-----G------APPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNT 542 (854)
Q Consensus 474 GmGlERL~~ilq~~~s~ydtd~f~~-----~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 542 (854)
-.||||||+-||++.|+||..-=.. + ..++.-..=..+....++.++...+...+.-..|..+
T Consensus 162 TYGlERlAmYiQ~vdnVydl~W~~~~~~~~tYgdvf~q~E~e~S~ynFE~ad~~~L~~~F~~~e~Ea~~ll~~~------ 235 (298)
T COG0752 162 TYGLERLAMYIQGVDNVYDLEWNDGPGGKVTYGDVFLQNEVEQSKYNFEYADVDMLFRHFDDYEKEAKRLLELG------ 235 (298)
T ss_pred ehhHHHHHHHHhCccceeEEeecCCCCCceehhhhhhhhHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHcC------
Confidence 3699999999999999998652211 0 1122111222333444556665544444433333322
Q ss_pred CCCCCCcccccchhhhHHHHHHHHHHHHHhhcCCCCCCCCCchHHH-HHHHHHHHH
Q psy16314 543 GRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLR-RILRRAVRY 597 (854)
Q Consensus 543 ~~~~~~~~~~~~~~~~RvIaDH~Ra~~f~iaDGv~Psn~grGYvlR-rilRRA~r~ 597 (854)
..+.+ ..+=+-|-|+ .-.+=|-|++--.+..+||+| |=|-|++..
T Consensus 236 -L~lPA-------Yd~vlKasH~--FNlLDARgaISVtER~~YI~RiR~Lar~~a~ 281 (298)
T COG0752 236 -LVLPA-------YDYVLKASHT--FNLLDARGAISVTERQRYILRIRNLARAVAE 281 (298)
T ss_pred -CCcch-------HHHHHHhhhh--hhhhccccceeehHHHHHHHHHHHHHHHHHH
Confidence 11110 1222345563 222345589999999999998 555555443
No 25
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=83.49 E-value=2.7 Score=45.66 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.3
Q ss_pred cCCCHHHHHHHhhccCCccccc
Q psy16314 473 CGMGFERLVSIIQDKRSNYDTD 494 (854)
Q Consensus 473 tGmGlERL~~ilq~~~s~ydtd 494 (854)
--.|||||++-||++.|+||..
T Consensus 156 iTYGLERiamylQ~vd~v~dl~ 177 (279)
T cd00733 156 ITYGLERIAMYLQGVDNVYDIE 177 (279)
T ss_pred eehhHHHHHHHHhCCCceeccc
Confidence 3469999999999999999864
No 26
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=82.78 E-value=3.2 Score=45.40 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.3
Q ss_pred cCCCHHHHHHHhhccCCccccc
Q psy16314 473 CGMGFERLVSIIQDKRSNYDTD 494 (854)
Q Consensus 473 tGmGlERL~~ilq~~~s~ydtd 494 (854)
-=.|||||++-||++.|+||..
T Consensus 157 ITYGLERiaMylQ~vd~v~dl~ 178 (293)
T TIGR00388 157 ITYGLERLAMYIQGVENVYDLE 178 (293)
T ss_pred eehhHHHHHHHHhCCCeeeeee
Confidence 3479999999999999999864
No 27
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=79.89 E-value=5 Score=43.74 Aligned_cols=107 Identities=22% Similarity=0.281 Sum_probs=54.3
Q ss_pred ccCCCHHHHHHHhhccCCccccccccC-CC------CCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCCCCCC
Q psy16314 472 DCGMGFERLVSIIQDKRSNYDTDVFGT-GA------PPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGR 544 (854)
Q Consensus 472 DtGmGlERL~~ilq~~~s~ydtd~f~~-~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 544 (854)
.--.|||||++-||++.|+||..-=.. +| .|+.-..-..+...++..++... ..+....+|.... .
T Consensus 159 EITYGLERiamylQ~vd~v~dl~w~~~~tYgdv~~~~E~e~S~ynFe~ad~~~l~~~F~-~~e~e~~~ll~~~------L 231 (283)
T PRK09348 159 EITYGLERLAMYLQGVDNVYDLVWNDGVTYGDVFLQNEVEQSKYNFEHADVEMLFKLFD-DYEKEAKRLLEKG------L 231 (283)
T ss_pred eeehhHHHHHHHHhCCCceeeeecCCCCceeeeccccHHHHhHhcccccCHHHHHHHHH-HHHHHHHHHHHcC------C
Confidence 334799999999999999998642210 11 11211122233334444444332 2333333333211 1
Q ss_pred CCCCcccccchhhh--HHHHHHHHHHHHHhhcCCCCCCCCCchHHH-HHHHHHHH
Q psy16314 545 GVGEEDKEGIDMAY--RVLADHARTLTIALADGGRPDNTGRGYVLR-RILRRAVR 596 (854)
Q Consensus 545 ~~~~~~~~~~~~~~--RvIaDH~Ra~~f~iaDGv~Psn~grGYvlR-rilRRA~r 596 (854)
.+ .|| =+=+-|+ .-.+=|-|++--++..+|++| |-|-|++.
T Consensus 232 ~l---------PAYd~~lK~SH~--FNlLDARgaIsvtER~~yI~rvR~la~~~a 275 (283)
T PRK09348 232 PL---------PAYDYVLKASHT--FNLLDARGAISVTERQRYILRIRNLARAVA 275 (283)
T ss_pred Cc---------chHHHHHHHHHH--HHhHhhccCccHHHHHHHHHHHHHHHHHHH
Confidence 11 233 1223343 222345688888888999987 44444444
No 28
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=76.51 E-value=1.1 Score=48.64 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.0
Q ss_pred ccCCCHHHHHHHhhccCCccccc
Q psy16314 472 DCGMGFERLVSIIQDKRSNYDTD 494 (854)
Q Consensus 472 DtGmGlERL~~ilq~~~s~ydtd 494 (854)
.-=.|||||++.||++.|+||..
T Consensus 154 EITYGLERiamylQ~vdnv~dl~ 176 (284)
T PF02091_consen 154 EITYGLERIAMYLQGVDNVYDLI 176 (284)
T ss_dssp EEEEEHHHHHHHHCT-SSGGGSE
T ss_pred ehhhhHHHHHHHHhCCCeeEeee
Confidence 34479999999999999999974
No 29
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=52.78 E-value=6.6 Score=42.89 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.1
Q ss_pred CCCCCchhhhHHhhhCCCCCccc
Q psy16314 379 IDCGMGFERLVSVIQDKRSNYDT 401 (854)
Q Consensus 379 IDTGmGlERl~~ilqg~~SnYdt 401 (854)
+.-=+|||||++.+||+.|+||.
T Consensus 158 ~EITYGLERiamylQ~vd~v~dl 180 (283)
T PRK09348 158 GEITYGLERLAMYLQGVDNVYDL 180 (283)
T ss_pred eeeehhHHHHHHHHhCCCceeee
Confidence 34458999999999999999986
No 30
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=50.53 E-value=7.1 Score=42.80 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=19.9
Q ss_pred CCCCCchhhhHHhhhCCCCCccc
Q psy16314 379 IDCGMGFERLVSVIQDKRSNYDT 401 (854)
Q Consensus 379 IDTGmGlERl~~ilqg~~SnYdt 401 (854)
+.-=+|||||++.+|++.|+||.
T Consensus 155 ~EITYGLERiaMylQ~vd~v~dl 177 (293)
T TIGR00388 155 VEITYGLERLAMYIQGVENVYDL 177 (293)
T ss_pred eeeehhHHHHHHHHhCCCeeeee
Confidence 33458999999999999999986
No 31
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=50.33 E-value=7.6 Score=42.34 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.0
Q ss_pred CCCCCchhhhHHhhhCCCCCccc
Q psy16314 379 IDCGMGFERLVSVIQDKRSNYDT 401 (854)
Q Consensus 379 IDTGmGlERl~~ilqg~~SnYdt 401 (854)
+.-=+|||||++-+||+.|+||.
T Consensus 154 ~EiTYGLERiamylQ~vd~v~dl 176 (279)
T cd00733 154 VEITYGLERIAMYLQGVDNVYDI 176 (279)
T ss_pred eeeehhHHHHHHHHhCCCceecc
Confidence 34458999999999999999986
No 32
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=48.08 E-value=7.5 Score=42.59 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=18.9
Q ss_pred CCCCCchhhhHHhhhCCCCCccc
Q psy16314 379 IDCGMGFERLVSVIQDKRSNYDT 401 (854)
Q Consensus 379 IDTGmGlERl~~ilqg~~SnYdt 401 (854)
+.-=+|||||++.+|++.++||.
T Consensus 153 ~EITYGLERiamylQ~vdnv~dl 175 (284)
T PF02091_consen 153 VEITYGLERIAMYLQGVDNVYDL 175 (284)
T ss_dssp EEEEEEHHHHHHHHCT-SSGGGS
T ss_pred eehhhhHHHHHHHHhCCCeeEee
Confidence 33448999999999999999986
No 33
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=41.65 E-value=18 Score=41.11 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=12.9
Q ss_pred CCchhhhHHhhhCCC
Q psy16314 382 GMGFERLVSVIQDKR 396 (854)
Q Consensus 382 GmGlERl~~ilqg~~ 396 (854)
|||+||++++.-|.+
T Consensus 309 G~GleRlaMl~ygi~ 323 (339)
T PRK00488 309 GMGIERLAMLKYGID 323 (339)
T ss_pred eecHHHHHHHHhCCc
Confidence 899999999987744
No 34
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=41.10 E-value=48 Score=42.79 Aligned_cols=106 Identities=24% Similarity=0.232 Sum_probs=0.0
Q ss_pred CHHHHHHHhhccCCcccc---------ccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCCCCCCCC
Q psy16314 476 GFERLVSIIQDKRSNYDT---------DVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGV 546 (854)
Q Consensus 476 GlERL~~ilq~~~s~ydt---------d~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 546 (854)
|||||++-||++.|+||. |+|.. .++.-..-..+..++++.++..-....+.-.-|..+
T Consensus 164 gler~~m~~q~~~~~~~~~~~~~~~y~~~~~~--~e~~~s~~~~~~~~~~~~~~~f~~~~~e~~~~~~~~---------- 231 (1000)
T PRK14908 164 GIERIAMYLQKVNHFKDIAWNDGLTYGEIFQQ--AEYEMSRYNFDDANTEMWLKHFEDYAAEALRLLDAG---------- 231 (1000)
T ss_pred cHHHHHHHHhCCCeeeeeecCCCCcchhhccc--cHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHcC----------
Q ss_pred CCcccccchhhhHHHHHHHHHHHHHhhcCCCCCCCCCchHHH-HHHHHHHHHhh
Q psy16314 547 GEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLR-RILRRAVRYGT 599 (854)
Q Consensus 547 ~~~~~~~~~~~~RvIaDH~Ra~~f~iaDGv~Psn~grGYvlR-rilRRA~r~~~ 599 (854)
-.-.||-.+---.-+.-.+=|-|++--++..+|++| |-|-|++..++
T Consensus 232 ------l~~pay~~~~k~sh~fn~ldar~~i~~~er~~~~~~~r~~~~~~~~~~ 279 (1000)
T PRK14908 232 ------LPVPAYDFVLKASHAFNILDARGAISVTERTRYIARIRQLARAVADLY 279 (1000)
T ss_pred ------CCcchHHHHHHHHHHhhhhhhccCccHHHHHHHHHHHHHHHHHHHHHH
No 35
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=40.26 E-value=13 Score=40.51 Aligned_cols=64 Identities=25% Similarity=0.343 Sum_probs=37.6
Q ss_pred CCchhhhHHhhhCCCCCccccchH----------HHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhc
Q psy16314 382 GMGFERLVSVIQDKRSNYDTDVFV----------PLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALA 451 (854)
Q Consensus 382 GmGlERl~~ilqg~~SnYdtDlF~----------pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~ 451 (854)
=+|||||++-+|++.++||- .|. .++.+-+.-.. .| +-+....++.++.+.++.+.+.-.+.
T Consensus 162 TYGlERlAmYiQ~vdnVydl-~W~~~~~~~~tYgdvf~q~E~e~S--~y-----nFE~ad~~~L~~~F~~~e~Ea~~ll~ 233 (298)
T COG0752 162 TYGLERLAMYIQGVDNVYDL-EWNDGPGGKVTYGDVFLQNEVEQS--KY-----NFEYADVDMLFRHFDDYEKEAKRLLE 233 (298)
T ss_pred ehhHHHHHHHHhCccceeEE-eecCCCCCceehhhhhhhhHHHhh--hh-----ccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999976 333 12211111101 11 11223467778888888776644444
Q ss_pred CC
Q psy16314 452 DG 453 (854)
Q Consensus 452 dg 453 (854)
.|
T Consensus 234 ~~ 235 (298)
T COG0752 234 LG 235 (298)
T ss_pred cC
Confidence 43
No 36
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=29.19 E-value=82 Score=28.94 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=25.7
Q ss_pred eeEEEEEeeCCeeeeeccCCCeeEEEeeccc
Q psy16314 678 EGTVVGLRYNKQFVDSVSSGTEAGILLDKSN 708 (854)
Q Consensus 678 ~a~Vlai~~dg~~V~~~~~G~~~~vvLD~Tp 708 (854)
-++|..|-.+++.|++|.+|+++.+.++-..
T Consensus 41 iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~ 71 (81)
T PF14578_consen 41 IGRIKSIEDNGKNVDEAKKGDEVAISIEGPT 71 (81)
T ss_dssp EEEEEEEEETTEEESEEETT-EEEEEEET--
T ss_pred EEEEEEeEECCcCccccCCCCEEEEEEeCCc
Confidence 5788999999999999999999999998644
No 37
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=26.10 E-value=46 Score=37.93 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=13.4
Q ss_pred CCCchhhhHHhhhCCC
Q psy16314 381 CGMGFERLVSVIQDKR 396 (854)
Q Consensus 381 TGmGlERl~~ilqg~~ 396 (854)
=|||+||+|++.-|.+
T Consensus 305 fGlGlERlAMLkygI~ 320 (335)
T COG0016 305 FGLGLERLAMLKYGIP 320 (335)
T ss_pred EeecHHHHHHHHhCCc
Confidence 4899999999887743
Done!