Query psy16314
Match_columns 854
No_of_seqs 369 out of 1998
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 18:14:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16314.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16314hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hy0_A Alanyl-tRNA synthetase; 100.0 2E-125 6E-130 1042.6 11.1 359 1-656 12-424 (441)
2 1yfs_A Alanyl-tRNA synthetase; 100.0 3E-125 1E-129 1046.4 5.8 350 1-654 13-412 (465)
3 2zze_A Alanyl-tRNA synthetase; 100.0 1E-121 3E-126 1077.3 13.7 466 1-803 67-628 (752)
4 2ztg_A Alanyl-tRNA synthetase; 100.0 3E-114 1E-118 1013.4 13.9 470 1-803 70-615 (739)
5 3hy0_A Alanyl-tRNA synthetase; 100.0 2.4E-84 8.3E-89 715.6 2.4 359 155-849 10-385 (441)
6 1yfs_A Alanyl-tRNA synthetase; 100.0 7.3E-83 2.5E-87 707.5 3.3 348 155-849 11-372 (465)
7 2zze_A Alanyl-tRNA synthetase; 100.0 4.8E-68 1.6E-72 623.3 2.2 95 752-850 349-443 (752)
8 2ztg_A Alanyl-tRNA synthetase; 100.0 9E-61 3.1E-65 561.6 4.8 93 753-852 349-441 (739)
9 3kew_A DHHA1 domain protein; s 99.5 1.2E-14 4E-19 152.2 5.8 100 675-803 14-113 (241)
10 2e1b_A PH0108, 216AA long hypo 99.4 1.6E-14 5.4E-19 148.8 0.2 99 675-803 16-114 (216)
11 1j5w_A Glycyl-tRNA synthetase 78.1 0.74 2.5E-05 48.6 1.7 22 473-494 169-190 (298)
12 1j5w_A Glycyl-tRNA synthetase 51.1 4.2 0.00014 43.0 0.9 23 379-401 167-189 (298)
13 3rf1_A Glycyl-tRNA synthetase 48.3 5 0.00017 42.7 0.9 21 381-401 181-201 (311)
14 3rf1_A Glycyl-tRNA synthetase 39.4 11 0.00036 40.3 1.7 22 473-494 181-202 (311)
15 1nnh_A Asparaginyl-tRNA synthe 21.0 37 0.0012 36.0 2.0 31 467-497 255-285 (294)
No 1
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=100.00 E-value=1.8e-125 Score=1042.64 Aligned_cols=359 Identities=44% Similarity=0.794 Sum_probs=314.6
Q ss_pred CCccccCCCceEeCCCCCCCCCCCcceeeecccccccccccCCcCCCCcccccccccccccceecCCCccCccCcCCCCC
Q psy16314 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVY 80 (854)
Q Consensus 1 ~~~f~~~~~h~~~~s~~~~p~~d~~llf~~agm~~~k~~~~g~~~~~~~~~~~~~~~~~q~c~r~~g~~~d~~~vg~~~~ 80 (854)
|+||+ +|||++||||||||.+||||||||||||||||||+|++.|+ ++||||+|||||||||||||||||+|+|
T Consensus 12 l~FF~-~kgH~~v~Ssslvp~~DptLLftnAGM~~FKp~flG~~~p~-----~~r~~~sQkCiR~gGKHnDlenVG~t~r 85 (441)
T 3hy0_A 12 LDFFH-SKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRN-----YSRATTSQRCVRAGGKHNDLENVGYTAR 85 (441)
T ss_dssp HHHHH-HTTCEECCCCCSSCSSCTTCSSCCSGGGGGHHHHHTSSCCS-----CSEEEEEEEEECEETTEECGGGBTTBSS
T ss_pred HHHHH-hCCCeEcCCCCccCCCCCCceeecccchhhhhhhcCCCCCC-----CCCccccccceecCCCCCCHHhhCCCCc
Confidence 58999 69999999999999999999999999999999999998874 7999999999999999999999999999
Q ss_pred cceeeeecccccccccccccccccCCCCCCchhhhhHHHHhchhhhccCCCcCCCCccccccccchhhhhcccccccccc
Q psy16314 81 HHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYF 160 (854)
Q Consensus 81 h~t~femlg~~s~g~y~k~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~fld~f 160 (854)
||||||||||||||||||+||| .||| ||||+. ++|
T Consensus 86 HhTfFEMLGNfSFGDYFK~eAI---------~~Aw---e~LT~~---------------------------------~~l 120 (441)
T 3hy0_A 86 HHTFFEMLGNFSFGDYFKLDAI---------LFAW---LLLTSE---------------------------------KWF 120 (441)
T ss_dssp CCSEEEEEEEEESSSCCHHHHH---------HHHH---HHHHCT---------------------------------TTT
T ss_pred cccceeeccccccchhhHHHHH---------HHHH---HHhCCC---------------------------------Ccc
Confidence 9999999999999999999999 9999 999941 167
Q ss_pred ccCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccchhhhccc
Q psy16314 161 KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFE 240 (854)
Q Consensus 161 kk~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~wH~Tffe 240 (854)
.||++++ |+|||.+ |+|++++|+.. .
T Consensus 121 -----------gl~~erL-----------~vTvf~~------------------------------D~Ea~~iW~~~--~ 146 (441)
T 3hy0_A 121 -----------ALPKERL-----------WVTVYES------------------------------DDEAYEIWEKE--V 146 (441)
T ss_dssp -----------CCCGGGE-----------EEEEETT------------------------------CHHHHHHHHHT--T
T ss_pred -----------CCCHHHe-----------EEEEeCC------------------------------CHHHHHHHHHc--c
Confidence 9999999 9999997 89999999431 1
Q ss_pred ccCCCcccCCC-------CCcceeecCcccCCCCCccccccccCCCCCCccccCCCchhhhhcCCcchhhhhhccccccc
Q psy16314 241 ILPESHIIPGS-------MKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKD 313 (854)
Q Consensus 241 Mlgn~~i~~f~-------~~DnFWe~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~~~~~~i~~~~~~~~~kd 313 (854)
-++.+||++++ .+||||+||++||||||||||||++..
T Consensus 147 Gvp~~rI~~~g~~~~~~y~~dNFW~mG~tGPCGPCsEI~yD~g~~----------------------------------- 191 (441)
T 3hy0_A 147 GIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDH----------------------------------- 191 (441)
T ss_dssp CCCGGGEEEECSTTSBTTBBTTEEESSSSEEEEEEEEEEEECCTT-----------------------------------
T ss_pred CCCHHHeeecCccccccccccCchhcCCCcCCcCCeeEEEecCcc-----------------------------------
Confidence 27899999887 677777777777777777777777530
Q ss_pred cccccCCCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCCCCCCchhhhHHhhh
Q psy16314 314 NFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVIQ 393 (854)
Q Consensus 314 NfW~~G~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~IDTGmGlERl~~ilq 393 (854)
+ .|| +++ .+++|++||+||||+|||||||+++|++.|||++|||||||||||++|||
T Consensus 192 -~-------~~g-------------~~~--~~~~d~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmGLERla~vlQ 248 (441)
T 3hy0_A 192 -I-------WGG-------------PPG--SPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLERIAAVLQ 248 (441)
T ss_dssp -S-------CCC-------------CTT--STTTTSSSEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHT
T ss_pred -c-------CCC-------------CCC--CCCCCCCCeEEEeeeeeeeeeecCCCccccCCCCceecCCCHHHHHHHHc
Confidence 0 012 111 23578999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCCCCCCcCCcccccc
Q psy16314 394 DKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPLPKKHIDC 473 (854)
Q Consensus 394 g~~SnYdtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~~~l~~L~~~~iDt 473 (854)
|++||||||+|.|||+++++++|.. |
T Consensus 249 g~~snYdtDlf~pii~~i~~~~g~~-~----------------------------------------------------- 274 (441)
T 3hy0_A 249 HVNSNYDIDLFRTLIQAVAKVTGAT-D----------------------------------------------------- 274 (441)
T ss_dssp TCSSGGGSHHHHHHHHHHHHHHTCC-C-----------------------------------------------------
T ss_pred CCCccccchhHHHHHHHHHHHhCCC-c-----------------------------------------------------
Confidence 9999999999999999999888753 1
Q ss_pred CCCHHHHHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCCCCCCCCCCccccc
Q psy16314 474 GMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEG 553 (854)
Q Consensus 474 GmGlERL~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 553 (854)
.
T Consensus 275 -------------------------------------------------------------------------------~ 275 (441)
T 3hy0_A 275 -------------------------------------------------------------------------------L 275 (441)
T ss_dssp -------------------------------------------------------------------------------T
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred chhhhHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHHHH-------------
Q psy16314 554 IDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL------------- 620 (854)
Q Consensus 554 ~~~~~RvIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~~~------------- 620 (854)
.+.++||||||+||++|+|+|||+|||+|||||||||||||+|+|+ +||++.+||++||++|++.|
T Consensus 276 ~~~s~rvIADH~R~~~f~iaDGv~PsNeGrGYVLRRilRRAvr~g~-~Lg~~~~fl~~Lv~~v~~~m~~~yPeL~~~~~~ 354 (441)
T 3hy0_A 276 SNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGN-MLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQ 354 (441)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHH-HHTCCSCCGGGGHHHHHHHHGGGGHHHHHTHHH
T ss_pred ccceeEEecchHHHHHHHHhcCcccCCCCcchhHHHHHHHHHHHHH-HhCCCCccHHHHHHHHHHHHhhhhhHHHhhHHH
Confidence 1379999999999999999999999999999999999999999994 89999999999999999999
Q ss_pred -------------------------HHhcC--------CCCccccccccCHHHHHHH-HHcCCCCCCCCC
Q psy16314 621 -------------------------LLSQG--------KGATIEDTIGLDIHSITDL-QTRGVPPTDDSP 656 (854)
Q Consensus 621 -------------------------~~~~~--------~~~~l~dt~g~~~~~~~~l-~~~~~~~t~d~~ 656 (854)
.+++. .+|+||||||||+|+++++ +++|+.++.++|
T Consensus 355 I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~~~~l~g~~af~LyDTyGfP~dLt~eia~e~g~~vD~~~F 424 (441)
T 3hy0_A 355 VEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGF 424 (441)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHSCCSSEECHHHHHHHHHHHCCCHHHHHHHHHTTTCEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhcCCCCHHHHHHHHHHcCCcccHHHH
Confidence 00111 1367999999999999985 679998876543
No 2
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=100.00 E-value=2.8e-125 Score=1046.35 Aligned_cols=350 Identities=44% Similarity=0.783 Sum_probs=304.5
Q ss_pred CCccccCCCceEeCCCCCCCCCCCcceeeecccccccccccCCcCCCCcccccccccccccceecCCCccCccCcCCCCC
Q psy16314 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVY 80 (854)
Q Consensus 1 ~~~f~~~~~h~~~~s~~~~p~~d~~llf~~agm~~~k~~~~g~~~~~~~~~~~~~~~~~q~c~r~~g~~~d~~~vg~~~~ 80 (854)
|+||+ +|||++||||||||.+||||||||||||||||||+|+++|+ ++||||+|||||||||||||||||+|+|
T Consensus 13 l~FF~-~kgH~~vpSsslvp~~DptLLftnAGM~~FKp~flG~~~p~-----~~r~t~sQkCiRag~~hNDlenVG~t~r 86 (465)
T 1yfs_A 13 LSFFE-KKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRP-----YKRATSCQKCLRVSGKHNDLEQVGYTSR 86 (465)
T ss_dssp HHHHH-TTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHHHHTSSCCS-----CSEEEEEEEEECEETTEECGGGBTTBSS
T ss_pred HHHHH-hCCCEEecCCCcccCCCCCcceeccchhhhhHHhcCCCCCC-----CCceeccccccccCCCcccHhhcCCCCC
Confidence 58999 79999999999999999999999999999999999999885 6899999999999999999999999999
Q ss_pred cceeeeecccccccccccccccccCCCCCCchhhhhHHHHhchhhhccCCCcCCCCccccccccchhhhhcccccccccc
Q psy16314 81 HHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYF 160 (854)
Q Consensus 81 h~t~femlg~~s~g~y~k~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~fld~f 160 (854)
||||||||||||||||||+||| .||| ||||+ .|
T Consensus 87 HhTfFEMLGNfSFGDYFK~eAI---------~~Aw---E~LT~-----------------------------------~l 119 (465)
T 1yfs_A 87 HHTFFEMLGNFSFGDYFKKEAI---------EYAW---EFVTE-----------------------------------VL 119 (465)
T ss_dssp CCSEEEEEEEEESSSCCHHHHH---------HHHH---HHHHH-----------------------------------TS
T ss_pred ccchheeccccchhhhhHHHHH---------HHHH---HHHHh-----------------------------------hc
Confidence 9999999999999999999999 9999 99999 67
Q ss_pred ccCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccchhhhccc
Q psy16314 161 KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFE 240 (854)
Q Consensus 161 kk~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~wH~Tffe 240 (854)
+||++++ |+|||.+ |+|++++|+.. -
T Consensus 120 -----------gl~~~rL-----------~vTv~~~------------------------------D~Ea~~iW~~~--~ 145 (465)
T 1yfs_A 120 -----------KLPKEKL-----------YVSVYKD------------------------------DEEAYRIWNEH--I 145 (465)
T ss_dssp -----------CCCGGGE-----------EEEEETT------------------------------CHHHHHHHHTT--T
T ss_pred -----------CCCHHHe-----------EEEEeCC------------------------------CHHHHHHHHHh--c
Confidence 9999999 9999997 89999999431 1
Q ss_pred ccCCCcccCCCCCcceeecCcccCCCCCccccccccCCCCCCccccCCCchhhhhcCCcchhhhhhccccccccccccCC
Q psy16314 241 ILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGE 320 (854)
Q Consensus 241 Mlgn~~i~~f~~~DnFWe~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~~~~~~i~~~~~~~~~kdNfW~~G~ 320 (854)
-++.+||++++.+||||+||++||||||||||||+++
T Consensus 146 G~p~~rI~~~g~~dNFW~mG~tGPCGPCsEI~yD~g~------------------------------------------- 182 (465)
T 1yfs_A 146 GIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGE------------------------------------------- 182 (465)
T ss_dssp CCCGGGEEEECHHHHEEESSSSEEEEEEEEEEEECCT-------------------------------------------
T ss_pred CCCHHHeeeCCCcCCcccCCCCcCCCCCeEEEEccCC-------------------------------------------
Confidence 1677777666655666655555555555555554432
Q ss_pred CCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCCCCCCchhhhHHhhhCCCCCcc
Q psy16314 321 TGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVIQDKRSNYD 400 (854)
Q Consensus 321 ~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~IDTGmGlERl~~ilqg~~SnYd 400 (854)
+. .+++||+||||+|||||||+++|++.|||++|||||||||||++||||++||||
T Consensus 183 -----------------~~-------~~~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmGLERla~vlQg~~snYd 238 (465)
T 1yfs_A 183 -----------------EY-------EGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNFE 238 (465)
T ss_dssp -----------------TS-------CHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCSSGGG
T ss_pred -----------------CC-------CCCCCEEEeeeeeeeEEEecCCCccccCCCCceecCcCHHHHHHHHcCCCccch
Confidence 10 026799999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCCCCCCcCCccccccCCCHHHH
Q psy16314 401 TDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPLPKKHIDCGMGFERL 480 (854)
Q Consensus 401 tDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~~~l~~L~~~~iDtGmGlERL 480 (854)
||+|.|||++|++++|++ |.. +
T Consensus 239 tDlf~pii~~i~~~~g~~-Y~~----~----------------------------------------------------- 260 (465)
T 1yfs_A 239 IDIIFPLIQFGEEVSGKK-YGE----K----------------------------------------------------- 260 (465)
T ss_dssp STTTHHHHHHHHHHHCCC-TTS----C-----------------------------------------------------
T ss_pred hhhHHHHHHHHHHHhCCC-CCC----C-----------------------------------------------------
Confidence 999999999999999875 521 0
Q ss_pred HHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCCCCCCCCCCcccccchhhhHH
Q psy16314 481 VSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRV 560 (854)
Q Consensus 481 ~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Rv 560 (854)
...+.++||
T Consensus 261 -----------------------------------------------------------------------~~~d~s~rv 269 (465)
T 1yfs_A 261 -----------------------------------------------------------------------FETDVALRV 269 (465)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred -----------------------------------------------------------------------cccceeEEE
Confidence 012479999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHHHH--------------------
Q psy16314 561 LADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL-------------------- 620 (854)
Q Consensus 561 IaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~~~-------------------- 620 (854)
||||+||++|+|+||++|||+|||||||||||||+|+|+ +||++.+||++||++|++.|
T Consensus 270 IADH~R~~~f~I~DGv~PsN~GrGYVLRRilRRavr~g~-~Lg~~~~fl~~Lv~~v~~~m~~~yPel~~~~~~I~~vi~~ 348 (465)
T 1yfs_A 270 IADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFGY-KLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKG 348 (465)
T ss_dssp HHHHHHHHHHHHHTTCCCCSBHHHHHHHHHHHHHHHHHH-HTTCCSCCHHHHHHHHHHHHTTTCTHHHHHHHHHHHHHHH
T ss_pred EcchhhhhhhhhccccccCCCCcchHHHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999995 79999999999999999999
Q ss_pred ------------------HHh----cCC-------CCccccccccCHHHHHHH-HHcCCCCCCC
Q psy16314 621 ------------------LLS----QGK-------GATIEDTIGLDIHSITDL-QTRGVPPTDD 654 (854)
Q Consensus 621 ------------------~~~----~~~-------~~~l~dt~g~~~~~~~~l-~~~~~~~t~d 654 (854)
.++ .++ +|+||||||||+|+++++ +++|+.+|.+
T Consensus 349 EE~~F~~TL~~G~~~l~~~~~~~~~~~~~~l~G~~af~LyDTyGfP~dLt~eia~e~g~~vD~~ 412 (465)
T 1yfs_A 349 EEKRFIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLE 412 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHTSCCCHHHHHHHHHTTTCEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHhhhhccCCCHHHHHHHHHHcCCeeCHH
Confidence 000 111 467999999999999985 7789887754
No 3
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=9.7e-122 Score=1077.31 Aligned_cols=466 Identities=26% Similarity=0.389 Sum_probs=371.1
Q ss_pred CCccccCCC---ceEeCCCCCCCCCCCcceeeeccccccccccc-CCcCCCCcccccccccccccceecCCCccCccCcC
Q psy16314 1 MDFFMKKKQ---HDYVHSSCVIPSDDPTLLFANAGMNQYKPIFL-GTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVG 76 (854)
Q Consensus 1 ~~~f~~~~~---h~~~~s~~~~p~~d~~llf~~agm~~~k~~~~-g~~~~~~~~~~~~~~~~~q~c~r~~g~~~d~~~vg 76 (854)
|+||+ +|| |++||||||||.+||||||||||||||||||+ |+++|+ ++|+||+|||||+ |||||||
T Consensus 67 l~fF~-~kg~~~H~~v~s~~lvp~~dptllftnAGm~~fk~~f~~G~~~pp-----~~r~~~~QkCiR~----~DlenVG 136 (752)
T 2zze_A 67 LRFFE-XHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPP-----ANPLVISQPSIRF----TDIDNVG 136 (752)
T ss_dssp HHHHH-TCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCS-----SSSEEEEEEEECC----TTGGGTT
T ss_pred HHHHh-ccCCCcceEEeccCcccCCCCCeeeeecchhhhhHhhcCCCcCCC-----CCCccccccceec----CcHhhcC
Confidence 58999 799 99999999999999999999999999999998 999885 5899999999995 6999999
Q ss_pred CCCCcceeeeeccccccc-----ccccccccccCCCCCCchhhhhHHHHhchhhhccCCCcCCCCccccccccchhhhhc
Q psy16314 77 KDVYHHTFFEMLGNWSFG-----DYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEML 151 (854)
Q Consensus 77 ~~~~h~t~femlg~~s~g-----~y~k~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 151 (854)
+|+||||||||||||||| ||||+||| .||| ||||+
T Consensus 137 ~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI---------~~aw---e~lT~---------------------------- 176 (752)
T 2zze_A 137 ITGRHFTIFEMMAHHAFNYPGXPIYWMDETV---------ELAF---EFFTK---------------------------- 176 (752)
T ss_dssp TSSSCCSEEEEEEEEEEECTTCCCCCHHHHH---------HHHH---HHHHH----------------------------
T ss_pred CCCcchhHHHhCccceeCCCchHHHHHHHHH---------HHHH---HHHhh----------------------------
Confidence 999999999999999999 99999999 9999 99998
Q ss_pred cccccccccccCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccc
Q psy16314 152 GNWSFGDYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGK 231 (854)
Q Consensus 152 ~~~~fld~fkk~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~ 231 (854)
.| +||++++
T Consensus 177 -------~~-----------gl~~~ri----------------------------------------------------- 185 (752)
T 2zze_A 177 -------EL-----------XMXPEDI----------------------------------------------------- 185 (752)
T ss_dssp -------TS-----------CCCGGGE-----------------------------------------------------
T ss_pred -------hh-----------hcchhhe-----------------------------------------------------
Confidence 45 5543332
Q ss_pred cchhhhcccccCCCcccCCCCCcceeecCcccCCCCCccccccccCCCCCCccccCCCchhhhhcCCcchhhhhhccccc
Q psy16314 232 DVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSM 311 (854)
Q Consensus 232 d~wH~TffeMlgn~~i~~f~~~DnFWe~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~~~~~~i~~~~~~~~~ 311 (854)
+ + +
T Consensus 186 --~----~-------------~---------------------------------------------------------- 188 (752)
T 2zze_A 186 --T----F-------------K---------------------------------------------------------- 188 (752)
T ss_dssp --E----E-------------E----------------------------------------------------------
T ss_pred --e----e-------------c----------------------------------------------------------
Confidence 0 0 2
Q ss_pred cccccccCCCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeecc-------------ccCCCCCccCCCCCC
Q psy16314 312 KDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQY-------------NRETDGSLKPLPKKH 378 (854)
Q Consensus 312 kdNfW~~G~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy-------------~r~~dG~l~pLp~k~ 378 (854)
||||+|| |||||||||||| | +||||+||||| || ++|++.|||++|
T Consensus 189 -dNfW~~G--GpcGPcsEI~~d----g--------------lEiwNlVFmq~~~~~~~~~~~~~~~~-~~g~~~~Lp~~~ 246 (752)
T 2zze_A 189 -ENPWAGG--GNAGPAFEVLYR----G--------------LEVATLVFMQYXXAPENAPQDQVVVI-XGEKYIPMETXV 246 (752)
T ss_dssp -ECCEEET--TEEECEEEEEET----T--------------EEEEEEEEEEEEECCTTCCSCCEEET-TTEEEEEEEEEE
T ss_pred -cCcccCC--CCCCCceeEEEC----C--------------Eeeeeeeeeeeccccccccccchhcc-cCCeeeeCCccc
Confidence 4555666 677777777776 1 89999999999 88 699999999999
Q ss_pred CCCCCchhhhHHhhhCCCCCccccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCC
Q psy16314 379 IDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDN 458 (854)
Q Consensus 379 IDTGmGlERl~~ilqg~~SnYdtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~ 458 (854)
||||||||||++||||++||||| +|.|||++|++++|.+ |.. + .+++..++
T Consensus 247 IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~~~g~~-y~~-------~------~~~~~~a~-------------- 297 (752)
T 2zze_A 247 VDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIE-KID-------E------KILMENSR-------------- 297 (752)
T ss_dssp EEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHHHHTCC-CCC-------H------HHHHHHHH--------------
T ss_pred cccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHHhcCCC-ccc-------h------hhhhhhhh--------------
Confidence 99999999999999999999999 9999999999999986 421 0 11111111
Q ss_pred CCCCCCcCCccccccCCCHHHHHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCC
Q psy16314 459 TGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGR 538 (854)
Q Consensus 459 ~~~~l~~L~~~~iDtGmGlERL~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ 538 (854)
|.|.+..++...++++|+.+++...-....|.+-
T Consensus 298 --------------------------------------------~~g~~~~~~~~~~~~~~~~va~~~~~~~~~~~~~-- 331 (752)
T 2zze_A 298 --------------------------------------------LAGMFDIEDLGDLRYLREQVAKRVGITVEELEKA-- 331 (752)
T ss_dssp --------------------------------------------HHHTCCSSSSSCHHHHHHHHHHHHTSCHHHHHHH--
T ss_pred --------------------------------------------ccccCCccchhhHHHHHHHHHHhcCCCHHHHhhh--
Confidence 1222222233345566665555432222111000
Q ss_pred CCCCCCCCCCcccccchhhhHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHH
Q psy16314 539 PDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVD 618 (854)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~RvIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~ 618 (854)
-..+.++||||||+||++|||+||++|||+|||||||||||||+|+| ++||++.+ |++||++|++
T Consensus 332 -------------~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~GrGYvlRrilRRa~r~~-~~lg~~~~-l~~lv~~~~~ 396 (752)
T 2zze_A 332 -------------IRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHL-RELGLEVP-LSEIVALHIX 396 (752)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHHHHHHHHHH-HHTTCCCC-HHHHHHHHHH
T ss_pred -------------ccccceEEEehhhhhhhhhhcccCCCcCccchhHHHHHHHHHHHHHH-HHhCCCcc-hhHHHHHHHH
Confidence 00147999999999999999999999999999999999999999999 48999999 9999999999
Q ss_pred HH--------------------------------------HH----hcC-------CCCccccccccCHHHHHHH-HHcC
Q psy16314 619 LL--------------------------------------LL----SQG-------KGATIEDTIGLDIHSITDL-QTRG 648 (854)
Q Consensus 619 ~~--------------------------------------~~----~~~-------~~~~l~dt~g~~~~~~~~l-~~~~ 648 (854)
.| .+ +.+ .+|+||||||||+|+++++ +++|
T Consensus 397 ~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~~~~~~l~g~~af~LyDTyGfP~dlt~~ia~e~g 476 (752)
T 2zze_A 397 ELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTPEIVXEIAEKEG 476 (752)
T ss_dssp HHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHCCCHHHHHHHHTTSS
T ss_pred HhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHhccCCCHHHHHHHHHHcC
Confidence 99 00 001 1467999999999999985 7799
Q ss_pred CCCCCC-CCcc------------------ccCC--CCCCCCCCcccc---ccceeEEEEEeeCCeeeeeccCCCeeEEEe
Q psy16314 649 VPPTDD-SPKY------------------RYTP--TQPDTADGAYEF---EPCEGTVVGLRYNKQFVDSVSSGTEAGILL 704 (854)
Q Consensus 649 ~~~t~d-~~~y------------------~~~~--~~~~t~F~GYe~---~~~~a~Vlai~~dg~~V~~~~~G~~~~vvL 704 (854)
+.+|.+ +|.- .+.. ..+.|+|.||+. ++++|+|+++.. .+|||
T Consensus 477 ~~vd~~~~F~~~m~~q~~~~r~~~~~~~~~~~~~~~~~~T~~l~Y~~~yl~~~~a~Vl~i~~-------------~~VVL 543 (752)
T 2zze_A 477 VKVNIPDNFYSMVAKEAERTKEEKGEELVDFELLKDLPDTRRLYYEDPFMXEFDAXVLRVIX-------------DWVIL 543 (752)
T ss_dssp CCCCCCTTHHHHHHGGGGCC-------CCCSSSSSSSCCCEEHHHHCTTCCEEEEEEEEEET-------------TEEEE
T ss_pred CccCCcccHHHHHHHHHHHHhhcccccchhhHHhccCCCceeecccCCccceEEEEEEEEEc-------------CEEEE
Confidence 999887 4310 1110 123588999998 789999999973 47999
Q ss_pred ecccccccCCCccccceEEEccCcceeeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhhhhhHhhhhh
Q psy16314 705 DKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGT 784 (854)
Q Consensus 705 D~TpFYaEsGGQvgDtG~I~~~~~~~~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~IRRa~R~~~ 784 (854)
|+||||||||||+||+|+|..+++.+.| .+|+|. ++.++|+.....+ ...|-.+...|||++|+.+
T Consensus 544 D~TpFYpEgGGQ~~D~G~I~~~g~~~~V--------~dv~k~--~g~ivH~~~~~~~----l~vGd~V~~~VD~~rR~~~ 609 (752)
T 2zze_A 544 DATAFYPEGGGQPYDTGVLIVNGREVXV--------TNVQXV--GXVIIHXVEDPGA----FXEGMIVHGXIDWXRRIQH 609 (752)
T ss_dssp SEECSCCSBTTBCCCCEEEEETTEEEEE--------EEEEEE--TTEEEEEESCGGG----CCTTCEEEEEECHHHHHHH
T ss_pred eCCCCCCCCCCCCCCEEEEEeCCEEEEE--------Eeeeec--CcEEEEeccccCc----cCcCCeEEEEEeHHHHHHH
Confidence 9999999999999999999875544444 788875 5566776543111 1367889999999999999
Q ss_pred hhcCCCCccchhhHHHHHH
Q psy16314 785 EKLGAKPRLFSSLVNTVVD 803 (854)
Q Consensus 785 ~~Lg~~~~~L~~LV~~~i~ 803 (854)
|+.|++.|+|+..+..+..
T Consensus 610 mr~HTAtHLL~~ALr~vlG 628 (752)
T 2zze_A 610 MRHHTGTHVLMGALVRVLG 628 (752)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHhHHHHHHHHHHHHHcC
Confidence 9999999999998887654
No 4
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=3.3e-114 Score=1013.38 Aligned_cols=470 Identities=25% Similarity=0.422 Sum_probs=374.1
Q ss_pred CCccccCCCceEeCCCCCCCCCCCcceeeeccccccccccc-CCcCCCCcccccccccccccceecCCCccCccCcCCCC
Q psy16314 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFL-GTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDV 79 (854)
Q Consensus 1 ~~~f~~~~~h~~~~s~~~~p~~d~~llf~~agm~~~k~~~~-g~~~~~~~~~~~~~~~~~q~c~r~~g~~~d~~~vg~~~ 79 (854)
++||+ ++||+++||+||||.+|||||||||||+||||+|+ |...|+ +.|++++|||+|+ |||||||+|.
T Consensus 70 ~~ff~-~~gh~~~~s~~lvp~~dptllft~agm~~fkp~~~~g~~~p~-----~~~~~~~Q~ciR~----~D~envg~t~ 139 (739)
T 2ztg_A 70 LNFFE-RRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPP-----ANPLTISQPCIRL----DDLDSVGRTG 139 (739)
T ss_dssp HHHHH-TTTCEECCCCCSBCTTCSSBSBCCSGGGGGTTTTTTSSSCCS-----SSSEEEEEEEECG----GGGGGTTTSS
T ss_pred HHHHH-HCCCEEeCCcCcCCCCCCCceeeecChhhCcHhHhCCCCCCC-----CCCcccccccccC----cccccCCCCC
Confidence 57999 79999999999999999999999999999999997 998885 5899999999996 6999999999
Q ss_pred Ccceeeeeccccccc-----ccccccccccCCCCCCchhhhhHHHHhchhhhccCCCcCCCCccccccccchhhhhcccc
Q psy16314 80 YHHTFFEMLGNWSFG-----DYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNW 154 (854)
Q Consensus 80 ~h~t~femlg~~s~g-----~y~k~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 154 (854)
||||||||||||||| ||||+||| .||| ||| +
T Consensus 140 rH~tfFeMlgn~sFg~~~~~dYfK~eai---------~~~~---e~l-~------------------------------- 175 (739)
T 2ztg_A 140 RHLTLFEMMAHHAFNYPGKEIYWKNETV---------AYCT---ELL-N------------------------------- 175 (739)
T ss_dssp SCCSEEEEEEEEEEEBTTBCSCCHHHHH---------HHHH---HHH-H-------------------------------
T ss_pred cchhhhhccCccccCCCccccchHHHHH---------HHHH---HHH-H-------------------------------
Confidence 999999999999999 99999999 9999 999 5
Q ss_pred ccccccccCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccch
Q psy16314 155 SFGDYFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVY 234 (854)
Q Consensus 155 ~fld~fkk~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~w 234 (854)
.| +||++++ .
T Consensus 176 ----~~-----------g~~~~~i-------------------------------------------------------~ 185 (739)
T 2ztg_A 176 ----EL-----------GVKKEDI-------------------------------------------------------V 185 (739)
T ss_dssp ----HH-----------TCCGGGC-------------------------------------------------------E
T ss_pred ----Hh-----------CCCHHHe-------------------------------------------------------e
Confidence 45 5553211 0
Q ss_pred hhhcccccCCCcccCCCCCcceeecCcccCCCCCccccccccCCCCCCccccCCCchhhhhcCCcchhhhhhcccccccc
Q psy16314 235 HHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDN 314 (854)
Q Consensus 235 H~TffeMlgn~~i~~f~~~DnFWe~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~~~~~~i~~~~~~~~~kdN 314 (854)
.+||
T Consensus 186 ----------------------------------------------------------------------------~~dn 189 (739)
T 2ztg_A 186 ----------------------------------------------------------------------------YKEE 189 (739)
T ss_dssp ----------------------------------------------------------------------------EEEE
T ss_pred ----------------------------------------------------------------------------eccC
Confidence 0256
Q ss_pred ccccCCCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCcc-------CCCCCCCCCCCchhh
Q psy16314 315 FWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLK-------PLPKKHIDCGMGFER 387 (854)
Q Consensus 315 fW~~G~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~-------pLp~k~IDTGmGlER 387 (854)
||+|| ||||||+||||| | +||||+|||||||+++|.+. |||+++|||||||||
T Consensus 190 fW~~g--Gp~Gpc~Ei~~d----g--------------~EiwnlVfmq~~r~~~g~~~~~~~~y~~l~~~~iDtG~GlER 249 (739)
T 2ztg_A 190 PWAGG--GNAGPCLEAIVG----G--------------LEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLER 249 (739)
T ss_dssp EEEET--TEEEEEEEEEET----T--------------EEEEEEEEEEEEECTTCCEEETTEEEEEEEEEEEEEEEEHHH
T ss_pred cccCC--CCCCCeeEEEEC----C--------------EEeeeeeeEEeeecCCCceeecCccccCCCCCeEecCcCHHH
Confidence 66666 777788888886 2 89999999999999999998 999999999999999
Q ss_pred hHHhhhCCCCCccccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCCCCCCcCC
Q psy16314 388 LVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPLP 467 (854)
Q Consensus 388 l~~ilqg~~SnYdtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~~~l~~L~ 467 (854)
|++++||++||||| +|.|||++|++++|.+ |.. . + +. + -.++...+
T Consensus 250 ~~~~lqg~~s~yd~-~f~pii~~~~~~~g~~-y~~---~-~-~~-~--~~~~~~~~------------------------ 295 (739)
T 2ztg_A 250 FVWASKGTPTVYDA-IFPEVVDTIIDNSNVS-FNR---E-D-ER-V--RRIVAESS------------------------ 295 (739)
T ss_dssp HHHHHHCCSSHHHH-HCHHHHHHHHHTSCCS-SCT---T-C-HH-H--HHHHHHHH------------------------
T ss_pred HHHHHcCCCchHHh-hHHHHHHHHHHHhCCC-ccc---c-c-cc-h--hhhhhhhh------------------------
Confidence 99999999999999 9999999999999985 410 0 0 00 0 00111111
Q ss_pred ccccccCCCHHHHHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCCCCCCCCC
Q psy16314 468 KKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVG 547 (854)
Q Consensus 468 ~~~iDtGmGlERL~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 547 (854)
+|.|++..++.+.|+++|+.+++...-....|.+.
T Consensus 296 ----------------------------------~~~G~~~~~~~~~i~~~~~~~a~~~~~~~~~~~~~----------- 330 (739)
T 2ztg_A 296 ----------------------------------KLAGIMGELRGERLNQLRKSVADTVGVSVEELEGI----------- 330 (739)
T ss_dssp ----------------------------------HHHHHHTTCCTHHHHHHHHHHHHHHSSCHHHHHHH-----------
T ss_pred ----------------------------------hcccccCcccchhHHHHHHHhhhhcccchhhhhhh-----------
Confidence 13344444555567777776655432212111000
Q ss_pred CcccccchhhhHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHHHH-------
Q psy16314 548 EEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL------- 620 (854)
Q Consensus 548 ~~~~~~~~~~~RvIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~~~------- 620 (854)
-....++||||||+||++|||+|||+|||+|||||||||||||+|+| ++||++.+ |++||++|++.|
T Consensus 331 ----~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~lv~~~~~~m~~el~~~ 404 (739)
T 2ztg_A 331 ----VVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLA-EELELGLD-LYDLVEMHKKILGFEFDVP 404 (739)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHH-HHTTCSSC-HHHHHHHHHHHHCCCCSSC
T ss_pred ----ccccceEEEEecHHHHHHHHhccCcccCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HHHHHHHHHHHHHHHHHHH
Confidence 00126999999999999999999999999999999999999999999 58999999 999999999998
Q ss_pred -----------------HHh-----------c------CCCCccccccccCHHHHHHH-HHcCCCCCCC-CCcc------
Q psy16314 621 -----------------LLS-----------Q------GKGATIEDTIGLDIHSITDL-QTRGVPPTDD-SPKY------ 658 (854)
Q Consensus 621 -----------------~~~-----------~------~~~~~l~dt~g~~~~~~~~l-~~~~~~~t~d-~~~y------ 658 (854)
+++ + ..+|+||||||||+|+++++ +++|+.+|.+ +|.-
T Consensus 405 ~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~ 484 (739)
T 2ztg_A 405 LSTVQEILELEKERYRTTVSKGTRLVERLVERKKKLEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAELAKRH 484 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCHHHHHHHHHHHCCCHHHHHHHHHHTTCBCCCCTTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHcCCeeCCcccHHHHHHHHH
Confidence 000 1 02478999999999999985 7899999887 4410
Q ss_pred ---------ccCC-C-CCCCCCCcccc---ccceeEEEEEeeCCeeeeeccCCCeeEEEeecccccccCCCccccceEEE
Q psy16314 659 ---------RYTP-T-QPDTADGAYEF---EPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMI 724 (854)
Q Consensus 659 ---------~~~~-~-~~~t~F~GYe~---~~~~a~Vlai~~dg~~V~~~~~G~~~~vvLD~TpFYaEsGGQvgDtG~I~ 724 (854)
++.. . ...|+|.+|+. ++++|+|+++.. .+||||+||||||||||+||+|+|.
T Consensus 485 ~~a~~~~~~~~~~~~~~~~T~~l~Y~~~y~~~~~a~Vl~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~ 551 (739)
T 2ztg_A 485 SKAEKVQEKKITLQNEYPATEKLYYDDPTLLEFEAEVIGVEG-------------DFVILNRSAFYPESGGQDNDVGYLI 551 (739)
T ss_dssp SBCCCCCCCCCCCSSCCCCCEECTTTCTTCCEEEEEEEEEET-------------TEEEESEECCCCSBTTBCCCCEEEE
T ss_pred HHHhhccccchhhhccCCCceeecccCCcccEEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEE
Confidence 0100 0 23588999999 789999999973 3799999999999999999999998
Q ss_pred ccCcceeeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhhhhhHhhhhhhhcCCCCccchhhHHHHHH
Q psy16314 725 GVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVD 803 (854)
Q Consensus 725 ~~~~~~~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~IRRa~R~~~~~Lg~~~~~L~~LV~~~i~ 803 (854)
.+++.+.| .+|+|. ++.++|+..+..+ ..|-.+...|||++|+.+|+.|+..|+|+..+..+..
T Consensus 552 ~~g~~~~V--------~dv~k~--~g~ivH~~~~~~~-----~~Gd~V~~~VD~~rR~~~m~~HTAtHLL~~ALr~vlG 615 (739)
T 2ztg_A 552 ANGGKFEV--------VDVLEA--DGVVLHVVKGAKP-----EVGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLG 615 (739)
T ss_dssp ETTEEEEE--------CEEEEE--TTEEEEECCSSCC-----CTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ECCEEEEE--------EEEEEE--CCEEEEEEcccCC-----CCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 75544444 788875 5567777653221 2577899999999999999999999999988887654
No 5
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=100.00 E-value=2.4e-84 Score=715.57 Aligned_cols=359 Identities=39% Similarity=0.686 Sum_probs=282.9
Q ss_pred ccccccc-cCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccc
Q psy16314 155 SFGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDV 233 (854)
Q Consensus 155 ~fld~fk-k~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~ 233 (854)
+|++||+ |+|++|||||+||++|+|||||||||+||||||+|++.| +++|++|||||||+||||||||+||+|.
T Consensus 10 ~Fl~FF~~kgH~~v~Ssslvp~~DptLLftnAGM~~FKp~flG~~~p-----~~~r~~~sQkCiR~gGKHnDlenVG~t~ 84 (441)
T 3hy0_A 10 AFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKR-----NYSRATTSQRCVRAGGKHNDLENVGYTA 84 (441)
T ss_dssp HHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGHHHHHTSSCC-----SCSEEEEEEEEECEETTEECGGGBTTBS
T ss_pred HHHHHHHhCCCeEcCCCCccCCCCCCceeecccchhhhhhhcCCCCC-----CCCCccccccceecCCCCCCHHhhCCCC
Confidence 4789995 789999999999999999999999999999999998766 4689999999999999999999999999
Q ss_pred hhhhcccccCCCcccCCCCCcce--------eecCcccCCCCCccccccccCCCCCCccccCCCchhhhhc-----CCcc
Q psy16314 234 YHHTFFEILPESHIIPGSMKDNF--------WEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKAD-----LLPS 300 (854)
Q Consensus 234 wH~TffeMlgn~~i~~f~~~DnF--------We~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~-----~~~~ 300 (854)
||||||||||| |||+||| ||++|..- ..+|..++++ +|++.+|+|++..| +.++
T Consensus 85 rHhTfFEMLGN-----fSFGDYFK~eAI~~Awe~LT~~~---~lgl~~erL~-----vTvf~~D~Ea~~iW~~~~Gvp~~ 151 (441)
T 3hy0_A 85 RHHTFFEMLGN-----FSFGDYFKLDAILFAWLLLTSEK---WFALPKERLW-----VTVYESDDEAYEIWEKEVGIPRE 151 (441)
T ss_dssp SCCSEEEEEEE-----EESSSCCHHHHHHHHHHHHHCTT---TTCCCGGGEE-----EEEETTCHHHHHHHHHTTCCCGG
T ss_pred ccccceeeccc-----cccchhhHHHHHHHHHHHhCCCC---ccCCCHHHeE-----EEEeCCCHHHHHHHHHccCCCHH
Confidence 99999999999 6889999 99997420 1234445553 78888899988654 4567
Q ss_pred hhhhhh---ccccccccccccCCCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCC
Q psy16314 301 KLTRLE---NQRSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKK 377 (854)
Q Consensus 301 ~i~~~~---~~~~~kdNfW~~G~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k 377 (854)
+|++++ .....+||||+||++||||||||||||+++ . +| ...++. .
T Consensus 152 rI~~~g~~~~~~y~~dNFW~mG~tGPCGPCsEI~yD~g~---~--------------~~--------~g~~~~------~ 200 (441)
T 3hy0_A 152 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGD---H--------------IW--------GGPPGS------P 200 (441)
T ss_dssp GEEEECSTTSBTTBBTTEEESSSSEEEEEEEEEEEECCT---T--------------SC--------CCCTTS------T
T ss_pred HeeecCccccccccccCchhcCCCcCCcCCeeEEEecCc---c--------------cC--------CCCCCC------C
Confidence 887653 112389999999999999999999999743 1 00 011111 1
Q ss_pred CCCCCCchhhhHHhhhCCCCCccccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCC
Q psy16314 378 HIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPD 457 (854)
Q Consensus 378 ~IDTGmGlERl~~ilqg~~SnYdtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~ 457 (854)
..| .+|+++|||.|+++|+.+
T Consensus 201 ~~d----~~r~lEIWNlVFmQy~r~------------------------------------------------------- 221 (441)
T 3hy0_A 201 EED----GDRYIEIWNIVFMQFNRQ------------------------------------------------------- 221 (441)
T ss_dssp TTT----SSSEEEEEEEEEEEEEEC-------------------------------------------------------
T ss_pred CCC----CCCeEEEeeeeeeeeeec-------------------------------------------------------
Confidence 233 479999999988888642
Q ss_pred CCCCCCCcCCccccccCCCHHHHHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCC
Q psy16314 458 NTGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGG 537 (854)
Q Consensus 458 ~~~~~l~~L~~~~iDtGmGlERL~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~ 537 (854)
.++.|.|||++|||||||||||++|||+++||||||+|.+ |.+
T Consensus 222 -~~g~l~pLp~k~IDTGmGLERla~vlQg~~snYdtDlf~p-----------------------ii~------------- 264 (441)
T 3hy0_A 222 -ADGTMEPLPKPSVDTAMGLERIAAVLQHVNSNYDIDLFRT-----------------------LIQ------------- 264 (441)
T ss_dssp -TTSCEEEEEEEEEEEEEEHHHHHHHHTTCSSGGGSHHHHH-----------------------HHH-------------
T ss_pred -CCCccccCCCCceecCCCHHHHHHHHcCCCccccchhHHH-----------------------HHH-------------
Confidence 0235899999999999999999999999999999999874 000
Q ss_pred CCCCCCCCCCCcccccchhhhHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHH
Q psy16314 538 RPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVV 617 (854)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~RvIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv 617 (854)
.|+ +..|.+
T Consensus 265 ----------------------~i~-------------------------------------~~~g~~------------ 273 (441)
T 3hy0_A 265 ----------------------AVA-------------------------------------KVTGAT------------ 273 (441)
T ss_dssp ----------------------HHH-------------------------------------HHHTCC------------
T ss_pred ----------------------HHH-------------------------------------HHhCCC------------
Confidence 000 000000
Q ss_pred HHHHHhcCCCCccccccccCHHHHHHHHHcCCCCCCCCCccccCCCCCCCCCCccccccceeEEEEEeeCCeeeeeccCC
Q psy16314 618 DLLLLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSG 697 (854)
Q Consensus 618 ~~~~~~~~~~~~l~dt~g~~~~~~~~l~~~~~~~t~d~~~y~~~~~~~~t~F~GYe~~~~~a~Vlai~~dg~~V~~~~~G 697 (854)
|.
T Consensus 274 ------------------------------------------------------~~------------------------ 275 (441)
T 3hy0_A 274 ------------------------------------------------------DL------------------------ 275 (441)
T ss_dssp ------------------------------------------------------CT------------------------
T ss_pred ------------------------------------------------------cc------------------------
Confidence 00
Q ss_pred CeeEEEeecccccccCCCccccceEEEccCcceeeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhhhh
Q psy16314 698 TEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILR 777 (854)
Q Consensus 698 ~~~~vvLD~TpFYaEsGGQvgDtG~I~~~~~~~~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~IR 777 (854)
.+..++| |.|-. ..+.++++||..|+|. |+||+|||+||
T Consensus 276 ----------------------------~~~s~rv-------IADH~----R~~~f~iaDGv~PsNe--GrGYVLRRilR 314 (441)
T 3hy0_A 276 ----------------------------SNKSLRV-------IADHI----RSCAFLIADGVMPSNE--NRGYVLRRIIR 314 (441)
T ss_dssp ----------------------------TCHHHHH-------HHHHH----HHHHHHHHTTCCCCSS--HHHHHHHHHHH
T ss_pred ----------------------------ccceeEE-------ecchH----HHHHHHHhcCcccCCC--CcchhHHHHHH
Confidence 0000111 11100 0123567788899986 49999999999
Q ss_pred hHhhhhhhhcCCCCccchhhHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16314 778 RAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNESHLA 849 (854)
Q Consensus 778 Ra~R~~~~~Lg~~~~~L~~LV~~~i~~l~~~yPEl~~~kd~I~~iL~~EE~kF~~TL~kG~~i~~k~~~~~~ 849 (854)
||+||+ ++||++.+||++||+.+++.|++.||||.++++.|.++|..||++|.+||++|.+++++.+++++
T Consensus 315 RAvr~g-~~Lg~~~~fl~~Lv~~v~~~m~~~yPeL~~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~ 385 (441)
T 3hy0_A 315 RAVRHG-NMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS 385 (441)
T ss_dssp HHHHHH-HHHTCCSCCGGGGHHHHHHHHGGGGHHHHHTHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSCC
T ss_pred HHHHHH-HHhCCCCccHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999 68999999999999999999999999999999999999999999999999999999999987764
No 6
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=100.00 E-value=7.3e-83 Score=707.50 Aligned_cols=348 Identities=36% Similarity=0.614 Sum_probs=281.4
Q ss_pred ccccccc-cCCeeecCcCCCCCCCCccccccccCCCceeeccCcCCCCCcccccceeccchhhhhcCCCCCCCCcccccc
Q psy16314 155 SFGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDV 233 (854)
Q Consensus 155 ~fld~fk-k~H~~v~sss~ip~~~~tLLFtnAGM~qf~t~f~G~~~p~~~~~~~~R~vn~QkCIR~gGkHnDlD~vg~d~ 233 (854)
+|++||+ |+|++|||||+||++|+|||||||||+||||||+|++.|+ ++|+++||||||+||||||||+||+|.
T Consensus 11 ~Fl~FF~~kgH~~vpSsslvp~~DptLLftnAGM~~FKp~flG~~~p~-----~~r~t~sQkCiRag~~hNDlenVG~t~ 85 (465)
T 1yfs_A 11 LFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRP-----YKRATSCQKCLRVSGKHNDLEQVGYTS 85 (465)
T ss_dssp HHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHHHHTSSCCS-----CSEEEEEEEEECEETTEECGGGBTTBS
T ss_pred HHHHHHHhCCCEEecCCCcccCCCCCcceeccchhhhhHHhcCCCCCC-----CCceeccccccccCCCcccHhhcCCCC
Confidence 4789995 7899999999999999999999999999999999987774 589999999999999999999999999
Q ss_pred hhhhcccccCCCcccCCCCCcce--------eecCcccCCCCCccccccccCCCCCCccccCCCchhhhhc-----CCcc
Q psy16314 234 YHHTFFEILPESHIIPGSMKDNF--------WEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKAD-----LLPS 300 (854)
Q Consensus 234 wH~TffeMlgn~~i~~f~~~DnF--------We~g~~gpcgpcsei~~d~~~~~~~~~~~~~~D~~~~~~~-----~~~~ 300 (854)
||||||||||| |||+||| ||++|... .|..++++ +|++..|+|++..| +.++
T Consensus 86 rHhTfFEMLGN-----fSFGDYFK~eAI~~AwE~LT~~l-----gl~~~rL~-----vTv~~~D~Ea~~iW~~~~G~p~~ 150 (465)
T 1yfs_A 86 RHHTFFEMLGN-----FSFGDYFKKEAIEYAWEFVTEVL-----KLPKEKLY-----VSVYKDDEEAYRIWNEHIGIPSE 150 (465)
T ss_dssp SCCSEEEEEEE-----EESSSCCHHHHHHHHHHHHHHTS-----CCCGGGEE-----EEEETTCHHHHHHHHTTTCCCGG
T ss_pred Cccchheeccc-----cchhhhhHHHHHHHHHHHHHhhc-----CCCHHHeE-----EEEeCCCHHHHHHHHHhcCCCHH
Confidence 99999999999 6889999 99997532 34556664 78889999998754 4556
Q ss_pred hhhhhhccccccccccccCCCCCCCCCCcccccccCCCCCCCccCCCCCCceeeeeeeeeeccccCCCCCccCCCCCCCC
Q psy16314 301 KLTRLENQRSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHID 380 (854)
Q Consensus 301 ~i~~~~~~~~~kdNfW~~G~~GpcGPCtEI~yd~~~~g~~~~~~~~~~~~~~lEIWNlVFmqy~r~~dG~l~pLp~k~ID 380 (854)
+|++ ++.+||||+||++|||||||||||| .. +.+ +
T Consensus 151 rI~~----~g~~dNFW~mG~tGPCGPCsEI~yD-------------~g-~~~---------------------------~ 185 (465)
T 1yfs_A 151 RIWR----LGEEDNFWQMGDVGPCGPSSEIYVD-------------RG-EEY---------------------------E 185 (465)
T ss_dssp GEEE----ECHHHHEEESSSSEEEEEEEEEEEE-------------CC-TTS---------------------------C
T ss_pred Heee----CCCcCCcccCCCCcCCCCCeEEEEc-------------cC-CCC---------------------------C
Confidence 7764 4679999999999999999999997 11 110 1
Q ss_pred CCCchhhhHHhhhCCCCCccccchHHHHHHHHhhhCCCCCCCCCCCCccchhhhHHHHHHhhhhhHHhhhcCCCCCCCCC
Q psy16314 381 CGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 460 (854)
Q Consensus 381 TGmGlERl~~ilqg~~SnYdtDlF~pi~~~i~~~~g~~~y~g~~~~~~~~~id~~~r~~~dh~R~~~~~l~dg~~p~~~~ 460 (854)
|.+|+++|||.|+++|+.+ .+
T Consensus 186 ---~~~r~lEIWNlVFmQy~r~--------------------------------------------------------~~ 206 (465)
T 1yfs_A 186 ---GDERYLEIWNLVFMQYNRD--------------------------------------------------------EN 206 (465)
T ss_dssp ---HHHHEEEEEEEEEEEEEEC--------------------------------------------------------TT
T ss_pred ---CCCCEEEeeeeeeeEEEec--------------------------------------------------------CC
Confidence 2689999999999888642 02
Q ss_pred CCCCcCCccccccCCCHHHHHHHhhccCCccccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhhhhHHHHhhCCCCCC
Q psy16314 461 RGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPD 540 (854)
Q Consensus 461 ~~l~~L~~~~iDtGmGlERL~~ilq~~~s~ydtd~f~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 540 (854)
+.|.|||+++||||||||||++|||+++||||||+|.+ |.+.
T Consensus 207 g~l~pLp~k~IDTGmGLERla~vlQg~~snYdtDlf~p-----------------------ii~~--------------- 248 (465)
T 1yfs_A 207 GVLTPLPHPNIDTGMGLERIASVLQGKNSNFEIDIIFP-----------------------LIQF--------------- 248 (465)
T ss_dssp SCEEEEEEEEEEEEEEHHHHHHHHTTCSSGGGSTTTHH-----------------------HHHH---------------
T ss_pred CccccCCCCceecCcCHHHHHHHHcCCCccchhhhHHH-----------------------HHHH---------------
Confidence 46899999999999999999999999999999999975 0000
Q ss_pred CCCCCCCCcccccchhhhHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHhhhhcCCChhhhHHHHHHHHHHH
Q psy16314 541 NTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620 (854)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~RvIaDH~Ra~~f~iaDGv~Psn~grGYvlRrilRRA~r~~~~~Lg~~~~fl~~Lv~~vv~~~ 620 (854)
|+ +..|.+
T Consensus 249 --------------------i~-------------------------------------~~~g~~--------------- 256 (465)
T 1yfs_A 249 --------------------GE-------------------------------------EVSGKK--------------- 256 (465)
T ss_dssp --------------------HH-------------------------------------HHHCCC---------------
T ss_pred --------------------HH-------------------------------------HHhCCC---------------
Confidence 00 000000
Q ss_pred HHhcCCCCccccccccCHHHHHHHHHcCCCCCCCCCccccCCCCCCCCCCccccccceeEEEEEeeCCeeeeeccCCCee
Q psy16314 621 LLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEA 700 (854)
Q Consensus 621 ~~~~~~~~~l~dt~g~~~~~~~~l~~~~~~~t~d~~~y~~~~~~~~t~F~GYe~~~~~a~Vlai~~dg~~V~~~~~G~~~ 700 (854)
|.. + +
T Consensus 257 ---------------------------------------------------Y~~------------~----------~-- 261 (465)
T 1yfs_A 257 ---------------------------------------------------YGE------------K----------F-- 261 (465)
T ss_dssp ---------------------------------------------------TTS------------C----------H--
T ss_pred ---------------------------------------------------CCC------------C----------c--
Confidence 000 0 0
Q ss_pred EEEeecccccccCCCccccceEEEccCcceeeeecceeeeeeEEEcCCCceEEEecCCCCCCCCCCCcchhhhhhhhhHh
Q psy16314 701 GILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAV 780 (854)
Q Consensus 701 ~vvLD~TpFYaEsGGQvgDtG~I~~~~~~~~v~~~~~~~v~d~~k~~~~~~~vml~dg~~psg~~~~~GY~lR~~IRRa~ 780 (854)
..+-.++| |.|-. ..+.++++||..|+|. |+||+|||+||||+
T Consensus 262 ------------------------~~d~s~rv-------IADH~----R~~~f~I~DGv~PsN~--GrGYVLRRilRRav 304 (465)
T 1yfs_A 262 ------------------------ETDVALRV-------IADHL----RAITFAISDGVIPSNE--GRGYVIRRILRRAM 304 (465)
T ss_dssp ------------------------HHHHHHHH-------HHHHH----HHHHHHHHTTCCCCSB--HHHHHHHHHHHHHH
T ss_pred ------------------------ccceeEEE-------Ecchh----hhhhhhhccccccCCC--CcchHHHHHHHHHH
Confidence 00001111 11110 0123567788899986 49999999999999
Q ss_pred hhhhhhcCCCCccchhhHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16314 781 RYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNESHLA 849 (854)
Q Consensus 781 R~~~~~Lg~~~~~L~~LV~~~i~~l~~~yPEl~~~kd~I~~iL~~EE~kF~~TL~kG~~i~~k~~~~~~ 849 (854)
||+ ++||++.+||++||+.+++.|++.||||.++++.|.++|..||++|.+||++|.+++++++++++
T Consensus 305 r~g-~~Lg~~~~fl~~Lv~~v~~~m~~~yPel~~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~ 372 (465)
T 1yfs_A 305 RFG-YKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKAL 372 (465)
T ss_dssp HHH-HHTTCCSCCHHHHHHHHHHHHTTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHhCCCchhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 68999999999999999999999999999999999999999999999999999999999998874
No 7
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=4.8e-68 Score=623.35 Aligned_cols=95 Identities=27% Similarity=0.468 Sum_probs=89.6
Q ss_pred EEEecCCCCCCCCCCCcchhhhhhhhhHhhhhhhhcCCCCccchhhHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHHHH
Q psy16314 752 YVTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFL 831 (854)
Q Consensus 752 ~vml~dg~~psg~~~~~GY~lR~~IRRa~R~~~~~Lg~~~~~L~~LV~~~i~~l~~~yPEl~~~kd~I~~iL~~EE~kF~ 831 (854)
.+|++||..|+|.+ +||+|||+||||+||+ ++||++.+ |++||+.+++.|++.||||.++++.|.++|+.||++|.
T Consensus 349 ~f~i~DGv~PsN~G--rGYvlRrilRRa~r~~-~~lg~~~~-l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~ 424 (752)
T 2zze_A 349 TFMLADGVVPSNVX--AGYLARLLIRKSIRHL-RELGLEVP-LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYA 424 (752)
T ss_dssp HHHHHTTCCCSSSH--HHHHHHHHHHHHHHHH-HHTTCCCC-HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCcCccc--hhHHHHHHHHHHHHHH-HHhCCCcc-hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHH
Confidence 46788999999974 9999999999999999 69999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q psy16314 832 KTLSRGRSLLNRNESHLAQ 850 (854)
Q Consensus 832 ~TL~kG~~i~~k~~~~~~~ 850 (854)
+||++|.++++++++++++
T Consensus 425 ~Tl~~G~~~l~~~~~~~~~ 443 (752)
T 2zze_A 425 ETLRRGSDLVRREIAKLKK 443 (752)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999999999988753
No 8
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=9e-61 Score=561.64 Aligned_cols=93 Identities=24% Similarity=0.360 Sum_probs=87.1
Q ss_pred EEecCCCCCCCCCCCcchhhhhhhhhHhhhhhhhcCCCCccchhhHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHH
Q psy16314 753 VTYFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQFLK 832 (854)
Q Consensus 753 vml~dg~~psg~~~~~GY~lR~~IRRa~R~~~~~Lg~~~~~L~~LV~~~i~~l~~~yPEl~~~kd~I~~iL~~EE~kF~~ 832 (854)
+|++||..|+|.+ +||+|||+||||+||+ ++||++.+ |++||+.+++.|++ ||.++++.|.++|+.||++|.+
T Consensus 349 f~i~DGv~PsN~g--rGYvlRrilRRa~r~~-~~lg~~~~-l~~lv~~~~~~m~~---el~~~~~~I~~vi~~EE~~F~~ 421 (739)
T 2ztg_A 349 FMLGDGLVPSNAG--AGYLARLMIRRSLRLA-EELELGLD-LYDLVEMHKKILGF---EFDVPLSTVQEILELEKERYRT 421 (739)
T ss_dssp HHHHTTCCCCSSH--HHHHHHHHHHHHHHHH-HHTTCSSC-HHHHHHHHHHHHCC---CCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHhccCcccCCCC--cchHHHHHHHHHHHHH-HHhCCCcc-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999964 9999999999999999 79999999 99999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCC
Q psy16314 833 TLSRGRSLLNRNESHLAQCP 852 (854)
Q Consensus 833 TL~kG~~i~~k~~~~~~~~~ 852 (854)
||++|.+++++++++++++|
T Consensus 422 Tl~~G~~~l~~~~~~~~~l~ 441 (739)
T 2ztg_A 422 TVSKGTRLVERLVERKKKLE 441 (739)
T ss_dssp HHHHHHHHHHHHHHHHSBCC
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999887654
No 9
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=99.49 E-value=1.2e-14 Score=152.18 Aligned_cols=100 Identities=18% Similarity=0.249 Sum_probs=79.2
Q ss_pred ccceeEEEEEeeCCeeeeeccCCCeeEEEeecccccccCCCccccceEEEccCcceeeeecceeeeeeEEEcCCCceEEE
Q psy16314 675 EPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVT 754 (854)
Q Consensus 675 ~~~~a~Vlai~~dg~~V~~~~~G~~~~vvLD~TpFYaEsGGQvgDtG~I~~~~~~~~v~~~~~~~v~d~~k~~~~~~~vm 754 (854)
.+++|+|+++..+ ++.+.||||+||||||||||+||+|+|. .+.| .+|++. ++.++|
T Consensus 14 ~~~~a~V~~~~~~---------~~~~~vvLd~T~FYpegGGQ~~D~G~i~----~~~V--------~~v~~~--~g~i~H 70 (241)
T 3kew_A 14 KEFKGEIIEVKEI---------DGKFHVLLDQTAFFPGGGGQMGDLGLID----GIKV--------LDVYEE--EGKVYH 70 (241)
T ss_dssp CEEEECEEEEEEE---------TTEEEEEESEECCCCCBTTBCCCCEEET----TEEE--------EEEEEE--TTEEEE
T ss_pred ceeEEEEEEEEec---------CCeEEEEEeCCcccCCCCCCCCCEEEEe----eEEE--------EEEEEe--CCEEEE
Confidence 4678999998743 3457899999999999999999999995 2444 778774 456677
Q ss_pred ecCCCCCCCCCCCcchhhhhhhhhHhhhhhhhcCCCCccchhhHHHHHH
Q psy16314 755 YFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVD 803 (854)
Q Consensus 755 l~dg~~psg~~~~~GY~lR~~IRRa~R~~~~~Lg~~~~~L~~LV~~~i~ 803 (854)
+.++.. ..|-.+...|||++|+.+|+.|++.|+|+..+..+..
T Consensus 71 ~~~~~l------~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g 113 (241)
T 3kew_A 71 VLEKEP------KKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFG 113 (241)
T ss_dssp EESSCC------CCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EECCcC------CCCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCC
Confidence 765332 2467799999999999999999999998888876543
No 10
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=99.42 E-value=1.6e-14 Score=148.85 Aligned_cols=99 Identities=25% Similarity=0.346 Sum_probs=75.7
Q ss_pred ccceeEEEEEeeCCeeeeeccCCCeeEEEeecccccccCCCccccceEEEccCcceeeeecceeeeeeEEEcCCCceEEE
Q psy16314 675 EPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVT 754 (854)
Q Consensus 675 ~~~~a~Vlai~~dg~~V~~~~~G~~~~vvLD~TpFYaEsGGQvgDtG~I~~~~~~~~v~~~~~~~v~d~~k~~~~~~~vm 754 (854)
.+++|+|+++. . .+||||+||||||||||+||+|+|. + +.| .+|+|..++ .++|
T Consensus 16 ~~~~a~V~~~~----------~---~~vvld~T~Fype~GGQ~~D~G~i~---~-~~V--------~~v~~~~~~-~i~H 69 (216)
T 2e1b_A 16 KEAKGRVLEIR----------D---NAILLDQTIFYPTGGGQPHDRGTIN---G-VEV--------LDVYKDEEG-NVWH 69 (216)
T ss_dssp CEEEECBCCCC----------S---SCCCBSCCCSCCCCTTCCCCCEEET---T-EEE--------EEEECCTTC-CCEE
T ss_pred ceeeEEEEEEe----------C---CEEEEeCCCccCCCCCCCCCEEEEc---c-EEE--------EEEEECcCC-EEEE
Confidence 46788888872 1 1699999999999999999999995 2 555 788875344 4556
Q ss_pred ecCCCCCCCCCCCcchhhhhhhhhHhhhhhhhcCCCCccchhhHHHHHH
Q psy16314 755 YFGGHEPAGLEPDLDYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVD 803 (854)
Q Consensus 755 l~dg~~psg~~~~~GY~lR~~IRRa~R~~~~~Lg~~~~~L~~LV~~~i~ 803 (854)
+.....+ ...|-.+...|||++|+.+|+.|++.|+|+..+..+..
T Consensus 70 ~~~~~~~----l~~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g 114 (216)
T 2e1b_A 70 VVKEPEK----FKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLG 114 (216)
T ss_dssp EESCGGG----CCSSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEccCCC----cCCCCEEEEEECHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 5542111 13577789999999999999999999999988876654
No 11
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=78.06 E-value=0.74 Score=48.62 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.4
Q ss_pred cCCCHHHHHHHhhccCCccccc
Q psy16314 473 CGMGFERLVSIIQDKRSNYDTD 494 (854)
Q Consensus 473 tGmGlERL~~ilq~~~s~ydtd 494 (854)
-=.|||||++-||++.|+||..
T Consensus 169 ITYGLERiamylQ~vd~vydl~ 190 (298)
T 1j5w_A 169 ITYGLERIAMYLQGVDNVYEVQ 190 (298)
T ss_dssp EEEEHHHHHHHHHTCSSGGGCE
T ss_pred ecccHHHHHHHHhCCCceeccc
Confidence 3479999999999999999864
No 12
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=51.08 E-value=4.2 Score=43.04 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=19.9
Q ss_pred CCCCCchhhhHHhhhCCCCCccc
Q psy16314 379 IDCGMGFERLVSVIQDKRSNYDT 401 (854)
Q Consensus 379 IDTGmGlERl~~ilqg~~SnYdt 401 (854)
+.-=+|||||++.+||+.|+||.
T Consensus 167 ~EITYGLERiamylQ~vd~vydl 189 (298)
T 1j5w_A 167 LEITYGLERIAMYLQGVDNVYEV 189 (298)
T ss_dssp EEEEEEHHHHHHHHHTCSSGGGC
T ss_pred eeecccHHHHHHHHhCCCceecc
Confidence 33448999999999999999986
No 13
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=48.33 E-value=5 Score=42.70 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.9
Q ss_pred CCCchhhhHHhhhCCCCCccc
Q psy16314 381 CGMGFERLVSVIQDKRSNYDT 401 (854)
Q Consensus 381 TGmGlERl~~ilqg~~SnYdt 401 (854)
-=+|||||++-+||+.|+||.
T Consensus 181 ITYGLERlamylQ~vd~vyDl 201 (311)
T 3rf1_A 181 ITYGLERIAMYLQNVDNVYDI 201 (311)
T ss_dssp EEEEHHHHHHHHTTCSSGGGS
T ss_pred eehhHHHHHHHHhCCCeeeec
Confidence 348999999999999999976
No 14
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=39.42 E-value=11 Score=40.29 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.3
Q ss_pred cCCCHHHHHHHhhccCCccccc
Q psy16314 473 CGMGFERLVSIIQDKRSNYDTD 494 (854)
Q Consensus 473 tGmGlERL~~ilq~~~s~ydtd 494 (854)
-=.|||||++-||++.|+||..
T Consensus 181 ITYGLERlamylQ~vd~vyDl~ 202 (311)
T 3rf1_A 181 ITYGLERIAMYLQNVDNVYDIV 202 (311)
T ss_dssp EEEEHHHHHHHHTTCSSGGGSE
T ss_pred eehhHHHHHHHHhCCCeeeecc
Confidence 3479999999999999999864
No 15
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=20.99 E-value=37 Score=36.04 Aligned_cols=31 Identities=29% Similarity=0.422 Sum_probs=27.2
Q ss_pred CccccccCCCHHHHHHHhhccCCcccccccc
Q psy16314 467 PKKHIDCGMGFERLVSIIQDKRSNYDTDVFG 497 (854)
Q Consensus 467 ~~~~iDtGmGlERL~~ilq~~~s~ydtd~f~ 497 (854)
|.+|.-.|+|+|||++++.+.++.=|+-.|.
T Consensus 255 p~P~~G~glGieRL~mll~g~~~Irdvi~Fp 285 (294)
T 1nnh_A 255 LKPSAGAGIGVERLVRFIVGAKHIAEVQPFP 285 (294)
T ss_dssp CCCEEEEEEEHHHHHHHHHTCSSGGGGCSSC
T ss_pred CCCceEEEEcHHHHHHHHhCCCCHHHEEecc
Confidence 4467888999999999999999998888885
Done!