RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16314
(854 letters)
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase.
Length = 936
Score = 444 bits (1144), Expect = e-142
Identities = 184/330 (55%), Positives = 217/330 (65%), Gaps = 48/330 (14%)
Query: 156 FGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F +F K H ++ SS ++P DDPTLLF NAGMNQ+KPIFLGT DPN+ + KL RA NTQ
Sbjct: 20 FLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQ 79
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPG--SMKDNF--------WEM--GET 262
KCIRAGGKHNDLDDVGKD YHHTFFE+L G S D F WE+
Sbjct: 80 KCIRAGGKHNDLDDVGKDTYHHTFFEML-------GNWSFGDYFKKEAIGWAWELLTKVY 132
Query: 263 GPCGPCSELHYDRIGGGRNAADLVNQDDPAYKAD----------LLPSKLTRLENQRSMK 312
G L DR+ D D L ++ K
Sbjct: 133 G-------LPADRLYAT------YFGGDEKQAPDDEARAIWLDYLPEERVLPFGC----K 175
Query: 313 DNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLK 372
DNFWEMG+TGPCGPCSE+HYDRIG R+AADLVN DDP +EIWNLVFIQ+NRE DGSLK
Sbjct: 176 DNFWEMGDTGPCGPCSEIHYDRIGE-RDAADLVNNDDPRFIEIWNLVFIQFNREADGSLK 234
Query: 373 PLPKKHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGI 432
PLP KH+D GMG ERL S++Q+K SNYDTD+F+P+F+AIQ+ TGA PY G+VG ED + +
Sbjct: 235 PLPAKHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRV 294
Query: 433 DMAYRVLADHARTLTIALADGGRPDNTGRG 462
DMAYRV+ADH RTL+ A+ADG P N GRG
Sbjct: 295 DMAYRVVADHIRTLSFAIADGVVPSNEGRG 324
Score = 207 bits (530), Expect = 7e-56
Identities = 75/101 (74%), Positives = 84/101 (83%), Gaps = 1/101 (0%)
Query: 2 DFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQK 61
FF + K H ++ SS ++P DDPTLLF NAGMNQ+KPIFLGT DPN+ + KL RA NTQK
Sbjct: 22 SFF-ESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQK 80
Query: 62 CIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
CIRAGGKHNDLDDVGKD YHHTFFEMLGNWSFGDYFK + I
Sbjct: 81 CIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAI 121
Score = 179 bits (457), Expect = 1e-46
Identities = 78/166 (46%), Positives = 92/166 (55%), Gaps = 48/166 (28%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFG---------TGAPPYQGRVGEEDKE 513
LKPLP KH+D GMG ERL SI+Q+K SNYDTD+F TGA PY G+VG ED +
Sbjct: 233 LKPLPAKHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDD 292
Query: 514 GIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALA 573
+DMAYRV+ ADH RTL+ A+A
Sbjct: 293 RVDMAYRVV---------------------------------------ADHIRTLSFAIA 313
Query: 574 DGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDL 619
DG P N GRGYVLRR+LRRAVRYG LGA+ F +LV VV+L
Sbjct: 314 DGVVPSNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVEL 359
Score = 160 bits (408), Expect = 1e-40
Identities = 55/65 (84%), Positives = 59/65 (90%)
Query: 99 YKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGD 158
+KPIFLGT DPN+ + KL RA NTQKCIRAGGKHNDLDDVGKD YHHTFFEMLGNWSFGD
Sbjct: 55 FKPIFLGTADPNTPLRKLPRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD 114
Query: 159 YFKKQ 163
YFKK+
Sbjct: 115 YFKKE 119
Score = 103 bits (258), Expect = 2e-22
Identities = 39/74 (52%), Positives = 48/74 (64%)
Query: 769 DYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEE 828
YVLRR+LRRAVRYG LGA+ F +LV VV+L GD FPE+ K+ + I +II EEE
Sbjct: 324 GYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVELSGDVFPEVKKNEKRITEIIAEEEL 383
Query: 829 QFLKTLSRGRSLLN 842
F KTL +G
Sbjct: 384 SFGKTLEKGIEKFK 397
Score = 80.8 bits (200), Expect = 2e-15
Identities = 38/102 (37%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Query: 633 TIGLDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVD 692
I L + + LQ +GV TDD KY + E V + FV+
Sbjct: 468 AIELAAEATSWLQKQGVAATDDFLKYDW-------------LSDHEAVVKAILTGGGFVE 514
Query: 693 SVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDE-LEVC 733
SVS G E GI+LDK++FYAE GGQI D G + G +EV
Sbjct: 515 SVSEGDEVGIVLDKTSFYAESGGQIGDTGVLEGSGGAVVEVS 556
Score = 61.2 bits (149), Expect = 2e-09
Identities = 29/55 (52%), Positives = 32/55 (58%), Gaps = 10/55 (18%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPD-------LDYV-LRRILR 777
E WAWELLT VY +PADRLY TYFGG E PD LDY+ R+L
Sbjct: 119 EAIGWAWELLTKVYGLPADRLYATYFGGDE--KQAPDDEARAIWLDYLPEERVLP 171
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A). Other tRNA
synthetase sub-families are too dissimilar to be
included. This family includes only alanyl-tRNA
synthetases.
Length = 551
Score = 371 bits (954), Expect = e-119
Identities = 164/324 (50%), Positives = 197/324 (60%), Gaps = 48/324 (14%)
Query: 156 FGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F D+F KK H V SS V+P +DPTLLF NAGMNQ+KPIFLG RAVN+Q
Sbjct: 6 FLDFFEKKGHTVVPSSPVVPRNDPTLLFTNAGMNQFKPIFLGGEA----KPPYNRAVNSQ 61
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPG--SMKDNFWEMGETGPCGPCSEL- 271
KCIRAGGKHNDL++VG+ HHTFFE+L G S D F E E EL
Sbjct: 62 KCIRAGGKHNDLENVGRTARHHTFFEML-------GNFSFGDYFKE--EA--IEFAWELL 110
Query: 272 --HYDRIGGGRNAADL---VNQ-DDPAYKADLLPSKLTRLENQR----SMKDNFWEMGET 321
G + L V + DD A + K+ + +R KDNFWEMG+T
Sbjct: 111 TKVL-----GLDPERLYVTVYEWDDEAGP---IWEKIVGIPEERILRFGDKDNFWEMGDT 162
Query: 322 GPCGPCSELHYDRIG---GGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKH 378
GPCGPCSE+ YDR G GG + DD LEIWNLVF+Q+NRE+DG+LKPLPKK
Sbjct: 163 GPCGPCSEIDYDR-GEEIGGWPSGGPPTADDDRFLEIWNLVFMQFNRESDGTLKPLPKKS 221
Query: 379 IDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRV 438
ID GMG ERLV+V+Q+ RSNYDTD+F+PL E I++ +GA Y K+ D AYRV
Sbjct: 222 IDTGMGLERLVAVLQNVRSNYDTDLFIPLIELIEEISGAKYYT-------KDETDEAYRV 274
Query: 439 LADHARTLTIALADGGRPDNTGRG 462
+ADH R LT A+ADG P N GRG
Sbjct: 275 IADHTRALTFAIADGVVPSNEGRG 298
Score = 181 bits (462), Expect = 8e-49
Identities = 65/98 (66%), Positives = 75/98 (76%), Gaps = 5/98 (5%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+DFF +KK H V SS V+P +DPTLLF NAGMNQ+KPIFLG RAVN+Q
Sbjct: 7 LDFF-EKKGHTVVPSSPVVPRNDPTLLFTNAGMNQFKPIFLGGEA----KPPYNRAVNSQ 61
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFK 98
KCIRAGGKHNDL++VG+ HHTFFEMLGN+SFGDYFK
Sbjct: 62 KCIRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFK 99
Score = 165 bits (419), Expect = 3e-43
Identities = 69/160 (43%), Positives = 83/160 (51%), Gaps = 42/160 (26%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
LKPLPKK ID GMG ERLV+++Q+ RSNYDTD+F
Sbjct: 214 LKPLPKKSIDTGMGLERLVAVLQNVRSNYDTDLF-------------------------- 247
Query: 523 ADHARTL--TIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDN 580
L I G + K+ D AYRV+ADH R LT A+ADG P N
Sbjct: 248 ----IPLIELIEEISGAKYYT---------KDETDEAYRVIADHTRALTFAIADGVVPSN 294
Query: 581 TGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
GRGYVLRRILRRAVR+ +KLG K LV TV++ +
Sbjct: 295 EGRGYVLRRILRRAVRHA-KKLGLKEPFLYKLVPTVIEEM 333
Score = 127 bits (321), Expect = 1e-30
Identities = 42/65 (64%), Positives = 50/65 (76%), Gaps = 4/65 (6%)
Query: 99 YKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGD 158
+KPIFLG RAVN+QKCIRAGGKHNDL++VG+ HHTFFEMLGN+SFGD
Sbjct: 41 FKPIFLGGEA----KPPYNRAVNSQKCIRAGGKHNDLENVGRTARHHTFFEMLGNFSFGD 96
Query: 159 YFKKQ 163
YFK++
Sbjct: 97 YFKEE 101
Score = 112 bits (282), Expect = 9e-26
Identities = 40/80 (50%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRILRRAVR+ +KLG K LV TV++ +GD +PEL + +I +I++ EEE+
Sbjct: 299 YVLRRILRRAVRHA-KKLGLKEPFLYKLVPTVIEEMGDAYPELKEKEDTIQEILELEEER 357
Query: 830 FLKTLSRGRSLLNRNESHLA 849
F KTL RG LL R L
Sbjct: 358 FAKTLERGLRLLERLIKSLK 377
Score = 80.4 bits (199), Expect = 1e-15
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 19/98 (19%)
Query: 636 LDIHSITDLQTRGVPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVS 695
LD+ ++ +L P T + Y E ++ L + +FV V
Sbjct: 439 LDVSALVEL-----PATSEFLGYDDLE--------------AEAKILALFKDGEFVAEVL 479
Query: 696 SGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEVC 733
G E G++LD++ FYAE GGQI D G++IG E V
Sbjct: 480 EGQEGGVILDRTPFYAESGGQIGDTGYIIGEGGEFRVT 517
Score = 55.3 bits (134), Expect = 9e-08
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGGHEPAG 763
E +AWELLT V + +RLYVT + + AG
Sbjct: 101 EAIEFAWELLTKVLGLDPERLYVTVYEWDDEAG 133
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 325 bits (836), Expect = 4e-98
Identities = 125/362 (34%), Positives = 158/362 (43%), Gaps = 132/362 (36%)
Query: 155 SFGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
F D+F K H V S+ ++P +DPTLLF NAGM Q+K FLG P RA +
Sbjct: 10 KFLDFFESKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKPPY-----PRATTS 64
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEIL------------------------------- 242
QKCIR NDL++VG HHTFFE+L
Sbjct: 65 QKCIRT----NDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIEWAWELLTSVLGLPKEK 120
Query: 243 ----------------------PESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGR 280
P II KDNFW MG+TGPCGPCSE+ YDR
Sbjct: 121 LYVTVYEDDDEAYDIWKKEIGVPPERIIRIGKKDNFWSMGDTGPCGPCSEIFYDR----- 175
Query: 281 NAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCSELHYDRIGGGRN 340
GE GP
Sbjct: 176 --------------------------------------GEEYWGGP-------------- 183
Query: 341 AADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFERLVSVIQDKRSNYD 400
+D +EIWNLVF+Q+NR+ DG+L PLPKK+ID GMG ER+ +V+Q SNY+
Sbjct: 184 -PGSPEEDGDRYIEIWNLVFMQFNRDEDGNLTPLPKKNIDTGMGLERIAAVLQGVHSNYE 242
Query: 401 TDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 460
TD+F PL +AI++ TG K D+++RV+ADH R + +ADG P N G
Sbjct: 243 TDLFRPLIKAIEELTGV-----------KYEDDVSFRVIADHIRAVAFLIADGVLPSNEG 291
Query: 461 RG 462
RG
Sbjct: 292 RG 293
Score = 167 bits (425), Expect = 1e-42
Identities = 53/97 (54%), Positives = 63/97 (64%), Gaps = 10/97 (10%)
Query: 2 DFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQK 61
DFF + K H V S+ ++P +DPTLLF NAGM Q+K FLG P RA +QK
Sbjct: 13 DFF-ESKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKPPY-----PRATTSQK 66
Query: 62 CIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFK 98
CIR NDL++VG HHTFFEMLGN+SFGDYFK
Sbjct: 67 CIRT----NDLENVGYTARHHTFFEMLGNFSFGDYFK 99
Score = 151 bits (385), Expect = 1e-37
Identities = 62/157 (39%), Positives = 77/157 (49%), Gaps = 42/157 (26%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
L PLPKK+ID GMG ER+ +++Q SNY+TD+F R L
Sbjct: 213 LTPLPKKNIDTGMGLERIAAVLQGVHSNYETDLF-----------------------RPL 249
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
LT GV K D+++RV+ADH R + +ADG P N G
Sbjct: 250 IKAIEELT--------------GV----KYEDDVSFRVIADHIRAVAFLIADGVLPSNEG 291
Query: 583 RGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDL 619
RGYVLRRILRRAVR+G LG K LV V+D
Sbjct: 292 RGYVLRRILRRAVRHGR-LLGIKEPFLYKLVPVVIDE 327
Score = 115 bits (292), Expect = 2e-26
Identities = 34/64 (53%), Positives = 40/64 (62%), Gaps = 9/64 (14%)
Query: 100 KPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDY 159
K FLG P RA +QKCIR NDL++VG HHTFFEMLGN+SFGDY
Sbjct: 47 KDYFLGQEKPPY-----PRATTSQKCIRT----NDLENVGYTARHHTFFEMLGNFSFGDY 97
Query: 160 FKKQ 163
FK++
Sbjct: 98 FKEE 101
Score = 100 bits (251), Expect = 2e-21
Identities = 38/73 (52%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRILRRAVR+G LG K LV V+D +GD +PEL + I ++ EEE+
Sbjct: 294 YVLRRILRRAVRHGR-LLGIKEPFLYKLVPVVIDEMGDAYPELKEKQDLIEKVLKAEEER 352
Query: 830 FLKTLSRGRSLLN 842
FLKTL RG LL
Sbjct: 353 FLKTLERGLKLLE 365
Score = 64.7 bits (159), Expect = 1e-10
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 672 YEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELE 731
Y+ E V+ L + + VDS +G E ++LDK+ FYAE GGQ+ D G + E
Sbjct: 450 YDTLEAEAKVLALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTGVIED-GGVFE 508
Query: 732 VCTWAWELLTTVYKIPAD 749
V T K P
Sbjct: 509 V--------TDTQKPPNG 518
Score = 54.3 bits (132), Expect = 2e-07
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 14/57 (24%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGG--------HEPAGLEPDLDYVLRRILRRA 779
E WAWELLT+V +P ++LYVT + + G+ P+ RI+R
Sbjct: 101 EAIEWAWELLTSVLGLPKEKLYVTVYEDDDEAYDIWKKEIGVPPE------RIIRIG 151
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 300 bits (769), Expect = 8e-89
Identities = 132/319 (41%), Positives = 180/319 (56%), Gaps = 34/319 (10%)
Query: 155 SFGDYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
+F D+FK K H + S+ ++P +DPTLL NAGM Q+KPIF G V P S+ R VN
Sbjct: 5 TFLDFFKEKGHQVIPSASLVPRNDPTLLLTNAGMAQFKPIFTGIVKPPSN-----RLVNA 59
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPG--SMKDNFWEMGETGPCGPCSEL 271
Q CIR ND+++VG+ HHTFFE+L G S D F E E EL
Sbjct: 60 QPCIRL----NDIENVGRTARHHTFFEML-------GNFSFGDYFKE--EA--IAFAWEL 104
Query: 272 HYDRIGGGRNAADLV----NQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGETGPCGPC 327
+G + L D+ AY+ + KDNFW+MG+ GPCGPC
Sbjct: 105 LTSVLG--LDKERLYVTVYEDDEEAYEIWEKHGIPAERIIRCGDKDNFWDMGD-GPCGPC 161
Query: 328 SELHYDR--IGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGF 385
+E++YDR GG+ +++ +E+WNLVF+Q+NR+ DG+ PLPKK+ID GMG
Sbjct: 162 TEIYYDRGEFVGGKPGEPEFFEENDRYVEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGL 221
Query: 386 ERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGID--MAYRVLADHA 443
ER V+V+Q +NYDTD+F+PL E I++ TG G D++ ++ + RV+ADH
Sbjct: 222 ERFVAVLQGVPTNYDTDIFLPLIEKIEEITGVKYDSNNAGIMDEKRVEDLRSLRVIADHT 281
Query: 444 RTLTIALADGGRPDNTGRG 462
R L LADG P N GRG
Sbjct: 282 RALAFMLADGVVPSNEGRG 300
Score = 144 bits (365), Expect = 2e-35
Identities = 55/102 (53%), Positives = 70/102 (68%), Gaps = 10/102 (9%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+DFF K+K H + S+ ++P +DPTLL NAGM Q+KPIF G V P S+ R VN Q
Sbjct: 7 LDFF-KEKGHQVIPSASLVPRNDPTLLLTNAGMAQFKPIFTGIVKPPSN-----RLVNAQ 60
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
CIR ND+++VG+ HHTFFEMLGN+SFGDYFK + I
Sbjct: 61 PCIRL----NDIENVGRTARHHTFFEMLGNFSFGDYFKEEAI 98
Score = 142 bits (359), Expect = 1e-34
Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 51/197 (25%)
Query: 99 YKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGD 158
+KPIF G V P S+ R VN Q CIR ND+++VG+ HHTFFEMLGN+SFGD
Sbjct: 41 FKPIFTGIVKPPSN-----RLVNAQPCIRL----NDIENVGRTARHHTFFEMLGNFSFGD 91
Query: 159 YFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIR 218
YFK++ + FA + LG +D +L V
Sbjct: 92 YFKEE---------------AIAFAWELLTSV----LG-LDKE----RLYVTV------- 120
Query: 219 AGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDR--I 276
+ D ++ + H +P II KDNFW+MG+ GPCGPC+E++YDR
Sbjct: 121 ----YEDDEEAYEIWEKH----GIPAERIIRCGDKDNFWDMGD-GPCGPCTEIYYDRGEF 171
Query: 277 GGGRNAADLVNQDDPAY 293
GG+ +++ Y
Sbjct: 172 VGGKPGEPEFFEENDRY 188
Score = 134 bits (340), Expect = 2e-32
Identities = 58/159 (36%), Positives = 82/159 (51%), Gaps = 29/159 (18%)
Query: 462 GLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRV 521
PLPKK+ID GMG ER V+++Q +NYDTD+F
Sbjct: 206 NYTPLPKKNIDTGMGLERFVAVLQGVPTNYDTDIFLP-------------------LIEK 246
Query: 522 LADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNT 581
+ + G + D+ G+ +E + + RV+ADH R L LADG P N
Sbjct: 247 IEEIT---------GVKYDSNNAGIMDEKRVEDLRSLRVIADHTRALAFMLADGVVPSNE 297
Query: 582 GRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
GRGYVLRR++RRA+R+G +KLG K LV T++++L
Sbjct: 298 GRGYVLRRLIRRALRHG-KKLGLKEAFLYKLVPTLIEVL 335
Score = 92.1 bits (229), Expect = 5e-19
Identities = 34/74 (45%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRR++RRA+R+G +KLG K LV T++++LGD +PEL + + + I++ EEE+
Sbjct: 301 YVLRRLIRRALRHG-KKLGLKEAFLYKLVPTLIEVLGDYYPELKEKQEFVEQILELEEER 359
Query: 830 FLKTLSRGRSLLNR 843
F KTL RG L +
Sbjct: 360 FAKTLERGLRLFEK 373
Score = 63.9 bits (156), Expect = 2e-10
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 672 YEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELE 731
YE E V+GL + + VD +G ++LD++ FYAE GGQI D G++I + +
Sbjct: 457 YEDLEFEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAESGGQIGDTGYLIANDGKFR 516
Query: 732 V 732
V
Sbjct: 517 V 517
Score = 45.1 bits (107), Expect = 2e-04
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGGHEPAGLEPD 767
E +AWELLT+V + +RLYVT + E A +
Sbjct: 96 EAIAFAWELLTSVLGLDKERLYVTVYEDDEEAYEIWE 132
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 292 bits (750), Expect = 5e-86
Identities = 132/363 (36%), Positives = 165/363 (45%), Gaps = 129/363 (35%)
Query: 155 SFGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
F D+F KK H V SS ++P +DPTLLF NAGM Q+KP F G V P ++ RAV +
Sbjct: 14 KFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPAN-----RAVTS 68
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEIL------------------------------- 242
QKCIR ND+D+VG HHTFFE+L
Sbjct: 69 QKCIRT----NDIDNVGYTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEK 124
Query: 243 ----------------------PESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGR 280
P II DNFWEMG GPCGPCSE+ YDR
Sbjct: 125 LYVTVYEDDDEAYNEWEKIIGIPPERIIRIGASDNFWEMG-DGPCGPCSEIFYDR----- 178
Query: 281 NAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCSELHYDRIGGGRN 340
GE GP
Sbjct: 179 --------------------------------------GEEIGGGP-------------- 186
Query: 341 AADLVNQDDPDVLEIWNLVFIQYNRET-DGSLKPLPKKHIDCGMGFERLVSVIQDKRSNY 399
++D LEIWNLVF+QYNR+ DG+ PLPKK+ID GMG ER+ +V+Q +NY
Sbjct: 187 -PGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNIDTGMGLERIAAVLQGVPTNY 245
Query: 400 DTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNT 459
DTD+F P+ +AI+K TG ED+E D+++RV+ADH R+L +ADG P N
Sbjct: 246 DTDLFRPIIKAIEKLTGKK------YGEDEEDPDVSFRVIADHIRSLAFMIADGVLPSNE 299
Query: 460 GRG 462
GRG
Sbjct: 300 GRG 302
Score = 154 bits (392), Expect = 1e-38
Identities = 57/98 (58%), Positives = 69/98 (70%), Gaps = 10/98 (10%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+DFF +KK H V SS ++P +DPTLLF NAGM Q+KP F G V P ++ RAV +Q
Sbjct: 16 LDFF-EKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPAN-----RAVTSQ 69
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFK 98
KCIR ND+D+VG HHTFFEMLGN+SFGDYFK
Sbjct: 70 KCIRT----NDIDNVGYTARHHTFFEMLGNFSFGDYFK 103
Score = 152 bits (386), Expect = 6e-38
Identities = 62/164 (37%), Positives = 85/164 (51%), Gaps = 37/164 (22%)
Query: 457 DNTGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGID 516
D PLPKK+ID GMG ER+ +++Q +NYDTD+F
Sbjct: 211 DPGDGNYTPLPKKNIDTGMGLERIAAVLQGVPTNYDTDLF-------------------- 250
Query: 517 MAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGG 576
R + LT G+ ED+E D+++RV+ADH R+L +ADG
Sbjct: 251 ---RPIIKAIEKLT------GKKY-------GEDEEDPDVSFRVIADHIRSLAFMIADGV 294
Query: 577 RPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
P N GRGYVLRRI+RRA+R+G + LG K LV+TV+D +
Sbjct: 295 LPSNEGRGYVLRRIIRRALRHG-KLLGIKEPFLYKLVDTVIDEM 337
Score = 108 bits (271), Expect = 5e-24
Identities = 36/65 (55%), Positives = 45/65 (69%), Gaps = 9/65 (13%)
Query: 99 YKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGD 158
+KP F G V P ++ RAV +QKCIR ND+D+VG HHTFFEMLGN+SFGD
Sbjct: 50 FKPYFTGGVTPPAN-----RAVTSQKCIRT----NDIDNVGYTARHHTFFEMLGNFSFGD 100
Query: 159 YFKKQ 163
YFK++
Sbjct: 101 YFKEE 105
Score = 100 bits (251), Expect = 1e-21
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRI+RRA+R+G + LG K LV+TV+D +GD +PEL + I +++ EEE+
Sbjct: 303 YVLRRIIRRALRHG-KLLGIKEPFLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKLEEER 361
Query: 830 FLKTLSRGRSLLNR 843
F KTL RG LL +
Sbjct: 362 FAKTLERGLKLLEK 375
Score = 64.6 bits (158), Expect = 2e-10
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 672 YEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVND 728
Y+ E V+ L + + V ++ G E ++LD++ FYAE GGQ+ D G++ G
Sbjct: 462 YDDLEMEFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFGDGG 518
Score = 46.1 bits (110), Expect = 7e-05
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGGHEPA 762
E +AWE LT V +P ++LYVT + + A
Sbjct: 105 EAIEFAWEFLTKVLGLPKEKLYVTVYEDDDEA 136
>gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core
catalytic domain. AlaRS is a homodimer. It is
responsible for the attachment of alanine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. Class II assignment is
based upon its predicted structure and the presence of
three characteristic sequence motifs.
Length = 232
Score = 263 bits (673), Expect = 4e-82
Identities = 120/251 (47%), Positives = 142/251 (56%), Gaps = 37/251 (14%)
Query: 156 FGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 214
F +F KK H V SS V+P DDPTLLF NAGMNQ+KPIFLG V P ++ R VN+Q
Sbjct: 8 FLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPPAN-----RLVNSQ 62
Query: 215 KCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPG--SMKDNF--------WEMGETGP 264
KCIRAG N VGK HHTFFE+L G S D F WE+
Sbjct: 63 KCIRAGDIDN----VGKTGRHHTFFEML-------GNFSFGDYFKEEAIAFAWELLTEVL 111
Query: 265 CGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGETGPC 324
P L+ G + K L ++ R+ KDNFWEMG GPC
Sbjct: 112 GLPKDRLYVSVFEGDDEEEAIWWW-----KIGLPGIRIERI----GFKDNFWEMGGNGPC 162
Query: 325 GPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMG 384
GPCSE+ YDR G R+AA L N+DD LEIWNLVF+QYNR+ DG+ +PLPKK +D GMG
Sbjct: 163 GPCSEIFYDR-GEERDAASLPNEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMG 221
Query: 385 FERLVSVIQDK 395
ERLV V+Q
Sbjct: 222 LERLVWVLQGV 232
Score = 160 bits (406), Expect = 1e-44
Identities = 62/97 (63%), Positives = 69/97 (71%), Gaps = 10/97 (10%)
Query: 2 DFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQK 61
FF +KK H V SS V+P DDPTLLF NAGMNQ+KPIFLG V P ++ R VN+QK
Sbjct: 10 SFF-EKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPPAN-----RLVNSQK 63
Query: 62 CIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFK 98
CIRAG N VGK HHTFFEMLGN+SFGDYFK
Sbjct: 64 CIRAGDIDN----VGKTGRHHTFFEMLGNFSFGDYFK 96
Score = 109 bits (275), Expect = 5e-27
Identities = 39/65 (60%), Positives = 46/65 (70%), Gaps = 9/65 (13%)
Query: 99 YKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGD 158
+KPIFLG V P ++ R VN+QKCIRAG N VGK HHTFFEMLGN+SFGD
Sbjct: 43 FKPIFLGEVPPPAN-----RLVNSQKCIRAGDIDN----VGKTGRHHTFFEMLGNFSFGD 93
Query: 159 YFKKQ 163
YFK++
Sbjct: 94 YFKEE 98
Score = 52.0 bits (125), Expect = 3e-07
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDK 487
+PLPKK +D GMG ERLV ++Q
Sbjct: 208 YRPLPKKIVDTGMGLERLVWVLQGV 232
Score = 51.2 bits (123), Expect = 5e-07
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGGHEPA 762
E +AWELLT V +P DRLYV+ F G +
Sbjct: 98 EAIAFAWELLTEVLGLPKDRLYVSVFEGDDEE 129
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional.
Length = 594
Score = 168 bits (427), Expect = 6e-44
Identities = 104/334 (31%), Positives = 149/334 (44%), Gaps = 70/334 (20%)
Query: 158 DYFK-KQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKC 216
D+FK K H + +IP +DPT+LF AGM+ P LG P+ V+ QKC
Sbjct: 12 DFFKSKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLGEPHPSGTRL-----VDVQKC 66
Query: 217 IRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGE--------------T 262
+R G D+D+VG D+ H TFFE+L W +G T
Sbjct: 67 LRTG----DIDEVG-DLSHLTFFEMLGN------------WSLGAYFKEESIKYSFEFLT 109
Query: 263 GPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQR------SMKDNFW 316
P Y I + + D+ + + S L + S + N+W
Sbjct: 110 SP-------DYLNIPKDKLYVTVFEGDEEIPRDEETASVWESLGIPKDRIFYLSREHNWW 162
Query: 317 -EMGETGPCGPCSELHYDRIGGGRNAADLVNQDDP-----DVLEIWNLVFIQYNRETDGS 370
+GETGPCGP +E+ D G+ P EIWN VF+QYN++ DG+
Sbjct: 163 GPVGETGPCGPDTEIFVDT---GKPKCS--VNCRPTCSCGKYFEIWNNVFMQYNKDEDGN 217
Query: 371 LKPLPKKHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKE 430
+ L +K +D GMG ER ++ +Q K S YDT+ F P+ + I+K +G G E
Sbjct: 218 YEELKRKCVDTGMGIERTIAFLQGKSSVYDTEAFTPIIKRIEKISGK-----IYG--QNE 270
Query: 431 GIDMAYRVLADHARTLTIALAD--GGRPDNTGRG 462
D + R++ADH R L D P N G+G
Sbjct: 271 EDDRSIRIIADHIRAACFILGDPFVVLPSNVGQG 304
Score = 101 bits (252), Expect = 4e-22
Identities = 46/98 (46%), Positives = 58/98 (59%), Gaps = 11/98 (11%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
+DFF K K H + +IP +DPT+LF AGM+ P LG P+ V+ Q
Sbjct: 11 IDFF-KSKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLGEPHPSGTRL-----VDVQ 64
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFK 98
KC+R G D+D+VG D+ H TFFEMLGNWS G YFK
Sbjct: 65 KCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFK 97
Score = 89.8 bits (223), Expect = 2e-18
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 41/166 (24%)
Query: 455 RPDNTGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEG 514
D G + L +K +D GMG ER ++ +Q K S YDT+ F P R+ +
Sbjct: 211 NKDEDGN-YEELKRKCVDTGMGIERTIAFLQGKSSVYDTEAF----TPIIKRIEKI---- 261
Query: 515 IDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALAD 574
+G+ G E D + R++ADH R L D
Sbjct: 262 ---------------------------SGKIYG--QNEEDDRSIRIIADHIRAACFILGD 292
Query: 575 --GGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVD 618
P N G+GYVLRR++RR++R+ +KLG + + LV++V +
Sbjct: 293 PFVVLPSNVGQGYVLRRLIRRSIRHA-KKLGIESHFLADLVDSVEE 337
Score = 78.7 bits (194), Expect = 6e-15
Identities = 55/182 (30%), Positives = 79/182 (43%), Gaps = 56/182 (30%)
Query: 101 PIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYF 160
P LG P+ V+ QKC+R G D+D+VG D+ H TFFEMLGNWS G YF
Sbjct: 47 PYLLGEPHPSGTRL-----VDVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYF 96
Query: 161 KKQ-----HDYVHSSCV--IPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
K++ +++ S IP D Y +F G + ++ + +
Sbjct: 97 KEESIKYSFEFLTSPDYLNIPKD-----------KLYVTVFEG----DEEIPRDEETASV 141
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFW-EMGETGPCGPCSELH 272
+ G + KD F+ L H N+W +GETGPCGP +E+
Sbjct: 142 WE--SLG--------IPKD---RIFY--LSREH--------NWWGPVGETGPCGPDTEIF 178
Query: 273 YD 274
D
Sbjct: 179 VD 180
Score = 64.8 bits (158), Expect = 1e-10
Identities = 28/68 (41%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRR++RR++R+ +KLG + + LV++V ++ G +PELT+ I + +++EEE+
Sbjct: 305 YVLRRLIRRSIRHA-KKLGIESHFLADLVDSVEEIYGSFYPELTEKKDFIKEELNKEEEK 363
Query: 830 FLKTLSRG 837
F KTL +G
Sbjct: 364 FFKTLRKG 371
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
Length = 900
Score = 61.4 bits (150), Expect = 1e-09
Identities = 66/291 (22%), Positives = 102/291 (35%), Gaps = 105/291 (36%)
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEIL-------PESHIIPGSMKDNFWEMGETGPCG 266
Q CIR ND+D+VG+ H T FE++ P+ + +W ET
Sbjct: 123 QPCIRL----NDIDNVGRTGRHLTSFEMMAHHAFNYPDKEV--------YW-KDET--VE 167
Query: 267 PCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGETGPCGP 326
C E +G ++ ++ +K +++WE G G GP
Sbjct: 168 YCFEFFTKELG--------IDPEEITFK------------------ESWWEGG--GNAGP 199
Query: 327 CSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFE 386
C E+ G LE+ LVF+QY ++ +P K +D G G E
Sbjct: 200 CFEVLV----RG--------------LELATLVFMQY-KKDGNRYVEMPLKIVDTGYGLE 240
Query: 387 RLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPP-----------YQGRVGEEDKEGIDMA 435
R+ Q + YD +F L + +++ G G + E+ E +
Sbjct: 241 RIAWASQGTPTAYDA-IFGELVDKLKENAGVEEPDEEILAEAARLAGLMDIEEIEDLRSL 299
Query: 436 YR------------------------VLADHARTLTIALADGGRPDNTGRG 462
+ +ADH RTL L DG P N G G
Sbjct: 300 RQKVAKKLGIDVEELEELLEPLEAIYAIADHTRTLAFMLGDGIVPSNVGEG 350
Score = 61.0 bits (149), Expect = 2e-09
Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 20/173 (11%)
Query: 459 TGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVG-EEDKEGIDM 517
G +P K +D G G ER+ Q + YD +FG + G EE E I
Sbjct: 221 DGNRYVEMPLKIVDTGYGLERIAWASQGTPTAYDA-IFGELVDKLKENAGVEEPDEEILA 279
Query: 518 AYRVLA-----DHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRV-----LADHART 567
LA + L + +G + +E ++ + +ADH RT
Sbjct: 280 EAARLAGLMDIEEIEDLRSLR------QKVAKKLGIDVEELEELLEPLEAIYAIADHTRT 333
Query: 568 LTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLL 620
L L DG P N G GY+ R ++RR +R ++LG L S LV+ +D L
Sbjct: 334 LAFMLGDGIVPSNVGEGYLARLVIRRTLRL-LDELGLDVPL-SELVDMQIDEL 384
Score = 59.9 bits (146), Expect = 5e-09
Identities = 28/74 (37%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
Y+ R ++RR +R ++LG L S LV+ +D L + +PEL ++ I+DI+D EEE+
Sbjct: 351 YLARLVIRRTLRL-LDELGLDVPL-SELVDMQIDELKEDYPELKENRDYILDIVDLEEEK 408
Query: 830 FLKTLSRGRSLLNR 843
+ +TL RG+ ++ R
Sbjct: 409 YRETLERGKRIVER 422
Score = 36.8 bits (86), Expect = 0.056
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 702 ILLDKSNFYAEQGGQIYDEGFMIGVNDELEV 732
++LD++ FY E GGQ D G +I +V
Sbjct: 522 VVLDQTAFYPEGGGQPADTGVLIVDGKGYKV 552
Score = 33.3 bits (77), Expect = 0.68
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 60 QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSF 93
Q CIR ND+D+VG+ H T FEM+ + +F
Sbjct: 123 QPCIRL----NDIDNVGRTGRHLTSFEMMAHHAF 152
Score = 33.3 bits (77), Expect = 0.68
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 123 QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSF 156
Q CIR ND+D+VG+ H T FEM+ + +F
Sbjct: 123 QPCIRL----NDIDNVGRTGRHLTSFEMMAHHAF 152
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase. This family of
alanyl-tRNA synthetases is limited to the archaea, and
is a subset of those sequences identified by the model
pfam07973 covering the second additional domain (SAD) of
alanyl and threonyl tRNA synthetases.
Length = 902
Score = 57.7 bits (140), Expect = 2e-08
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
Y+ R ++RR +R +LG L S LV ++ L +PEL ++ I+DI+D EEE+
Sbjct: 355 YLARLVIRRTLRL-MRELGLDIPL-SDLVEMQLEELKKIYPELKENKDYILDILDLEEEK 412
Query: 830 FLKTLSRGRSLLNR 843
+ +TL RGR ++ R
Sbjct: 413 YRETLERGRRIVER 426
Score = 56.9 bits (138), Expect = 4e-08
Identities = 48/188 (25%), Positives = 68/188 (36%), Gaps = 40/188 (21%)
Query: 454 GRPDNTGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFG---------TGAPP-- 502
G + G +P K +D G G ER V Q + YD +F G
Sbjct: 220 GEIEIKGGRYSEMPLKIVDTGYGLERFVWASQGTPTAYDA-IFPEIVDKLKENAGVELID 278
Query: 503 ---------YQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEG 553
G + ED+E + + +AD G V E +K
Sbjct: 279 EEILAENARLAGMMDIEDEEDLRELRKKVAD----------------KIGIDVEELEKII 322
Query: 554 IDMAY-RVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSL 612
+ +ADH R L L DG P N GY+ R ++RR +R +LG L S L
Sbjct: 323 APVERIYAIADHTRCLAFMLGDGIVPSNVKEGYLARLVIRRTLRL-MRELGLDIPL-SDL 380
Query: 613 VNTVVDLL 620
V ++ L
Sbjct: 381 VEMQLEEL 388
Score = 56.5 bits (137), Expect = 5e-08
Identities = 71/294 (24%), Positives = 107/294 (36%), Gaps = 98/294 (33%)
Query: 211 VNTQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSE 270
V +Q CIR ND+D+VG+ H T FE++ H K+ +W ET C E
Sbjct: 117 VISQPCIRL----NDIDNVGRTGRHLTCFEMMAH-HAFNYPDKEIYW-KDET--VEYCFE 168
Query: 271 LHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCSEL 330
+ +G ++ ++ YK ++ WE G G GPC E+
Sbjct: 169 F-LEELG--------IDPEEITYK------------------ESPWEGG--GNAGPCFEV 199
Query: 331 HYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSL-------KPLPKKHIDCGM 383
I GG LE+ LVF+QY + +G + +P K +D G
Sbjct: 200 ----IVGG--------------LELATLVFMQYEEDKEGEIEIKGGRYSEMPLKIVDTGY 241
Query: 384 GFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPP-----------YQGRVGEEDKEGI 432
G ER V Q + YD +F + + +++ G G + ED+E +
Sbjct: 242 GLERFVWASQGTPTAYDA-IFPEIVDKLKENAGVELIDEEILAENARLAGMMDIEDEEDL 300
Query: 433 DMAYR------------------------VLADHARTLTIALADGGRPDNTGRG 462
+ +ADH R L L DG P N G
Sbjct: 301 RELRKKVADKIGIDVEELEKIIAPVERIYAIADHTRCLAFMLGDGIVPSNVKEG 354
Score = 39.2 bits (92), Expect = 0.011
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 699 EAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEVC 733
+ ++LD++ FY E GGQ D G++I E V
Sbjct: 523 DNYVVLDQTAFYPEGGGQPADTGYLITNGGEYRVV 557
Score = 34.6 bits (80), Expect = 0.26
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 57 VNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSF 93
V +Q CIR ND+D+VG+ H T FEM+ + +F
Sbjct: 117 VISQPCIRL----NDIDNVGRTGRHLTCFEMMAHHAF 149
Score = 34.6 bits (80), Expect = 0.26
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 120 VNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSF 156
V +Q CIR ND+D+VG+ H T FEM+ + +F
Sbjct: 117 VISQPCIRL----NDIDNVGRTGRHLTCFEMMAHHAF 149
>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to
alanyl-tRNA synthetase HxxxH domain [General function
prediction only].
Length = 241
Score = 37.0 bits (86), Expect = 0.027
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 686 YNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDE 729
Y K+F +V + I+LD++ FY GGQ D G +I E
Sbjct: 11 YLKEFEATVVDVEDNEIVLDRTIFYPTGGGQPGDTGTLIWAGGE 54
>gnl|CDD|239663 cd03692, mtIF2_IVc, mtIF2_IVc: this family represents the C2
subdomain of domain IV of mitochondrial translation
initiation factor 2 (mtIF2) which adopts a beta-barrel
fold displaying a high degree of structural similarity
with domain II of the translation elongation factor
EF-Tu. The C-terminal part of mtIF2 contains the entire
fMet-tRNAfmet binding site of IF-2 and is resistant to
proteolysis. This C-terminal portion consists of two
domains, IF2 C1 and IF2 C2. IF2 C2 been shown to
contain all molecular determinants necessary and
sufficient for the recognition and binding of
fMet-tRNAfMet. Like IF2 from certain prokaryotes such as
Thermus thermophilus, mtIF2lacks domain II which is
thought to be involved in binding of E.coli IF-2 to 30S
subunits.
Length = 84
Score = 32.8 bits (76), Expect = 0.10
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 678 EGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAE 712
EG + L+ K V V G E GI L+ N
Sbjct: 44 EGKISSLKRFKDDVKEVKKGYECGITLENFNDIKV 78
>gnl|CDD|117486 pfam08919, F_actin_bind, F-actin binding. The F-actin binding
domain forms a compact bundle of four antiparallel
alpha-helices, which are arranged in a left-handed
topology. Binding of F-actin to the F-actin binding
domain may result in cytoplasmic retention and
subcellular distribution of the protein, as well as
possible inhibition of protein function.
Length = 179
Score = 31.2 bits (70), Expect = 1.2
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 649 VPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGT-EAGILLD 705
+P T SP + T + F P T V LR +Q + ++SG G++LD
Sbjct: 30 LPSTSPSP----SKMANGTQPSSAAFIPLISTRVSLRKTRQPPERIASGKITKGVVLD 83
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl
synthetase-like catalytic core domain. Class II amino
acyl-tRNA synthetases (aaRS) share a common fold and
generally attach an amino acid to the 3' OH of ribose of
the appropriate tRNA. PheRS is an exception in that it
attaches the amino acid at the 2'-OH group, like class I
aaRSs. These enzymes are usually homodimers. This domain
is primarily responsible for ATP-dependent formation of
the enzyme bound aminoacyl-adenylate. The substrate
specificity of this reaction is further determined by
additional domains. Intererestingly, this domain is also
found is asparagine synthase A (AsnA), in the accessory
subunit of mitochondrial polymerase gamma and in the
bacterial ATP phosphoribosyltransferase regulatory
subunit HisZ.
Length = 211
Score = 30.5 bits (69), Expect = 3.1
Identities = 12/65 (18%), Positives = 17/65 (26%), Gaps = 10/65 (15%)
Query: 55 RAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLGTVDPNSDMA 114
R R G L F L FG+ + F +
Sbjct: 77 RLAEIGPAFRNEGGRRGLR-------RVREFTQLEGEVFGEDGEEASEFEELI---ELTE 126
Query: 115 KLVRA 119
+L+RA
Sbjct: 127 ELLRA 131
>gnl|CDD|235875 PRK06848, PRK06848, hypothetical protein; Validated.
Length = 139
Score = 29.7 bits (67), Expect = 3.4
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 264 PCGPCSELHYDRIGGGRNAADLVNQDDPAYK---ADLLPSKLTR 304
PCG C EL D G+N +V +D K +LLP+K TR
Sbjct: 96 PCGACRELISDY---GKNTNVIVPYNDELVKVNIMELLPNKYTR 136
>gnl|CDD|233843 TIGR02390, RNA_pol_rpoA1, DNA-directed RNA polymerase subunit A'.
This family consists of the archaeal A' subunit of the
DNA-directed RNA polymerase. The example from
Methanocaldococcus jannaschii contains an intein.
Length = 867
Score = 30.5 bits (69), Expect = 4.3
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 479 RLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTI 531
RL++ +QD YD V T Q + GE +G+D +DH + + +
Sbjct: 817 RLINALQDLYVEYDGTVRDTRGNLIQFKYGE---DGVDPMK---SDHGKPVDV 863
>gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase)
[Translation, ribosomal structure and biogenesis].
Length = 509
Score = 30.6 bits (70), Expect = 4.3
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 678 EGTVVGLRYNKQFVDSVSSGTEAGILLDKSN 708
EG V L+ K V V G E GI ++
Sbjct: 457 EGEVESLKRFKDDVKEVRKGQECGIAIENYR 487
>gnl|CDD|213553 TIGR00706, SppA_dom, signal peptide peptidase SppA, 36K type. The
related but duplicated, double-length protein SppA
(protease IV) of E. coli was shown experimentally to
degrade signal peptides as are released by protein
processing and secretion. This protein shows stronger
homology to the C-terminal region of SppA than to the
N-terminal domain or to the related putative protease
SuhB. The member of this family from Bacillus subtilis
was shown to have properties consistent with a role in
degrading signal peptides after cleavage from precursor
proteins, although it was not demonstrated conclusively
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 208
Score = 29.6 bits (67), Expect = 4.8
Identities = 12/31 (38%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 811 ELTKDPQSIV-DIIDEEEEQFLKTLSRGRSL 840
ELT + ++I+ +++E EQF++ +S+GR+L
Sbjct: 135 ELTPEEKNILQSLVNESYEQFVQVVSKGRNL 165
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 29.8 bits (68), Expect = 8.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 678 EGTVVGLRYNKQFVDSVSSGTEAGILLDKSN 708
EG + L+ K V V +G E GI L+ N
Sbjct: 697 EGELESLKRFKDDVKEVRAGYECGIGLENYN 727
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.139 0.425
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 45,397,486
Number of extensions: 4637283
Number of successful extensions: 3721
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3643
Number of HSP's successfully gapped: 97
Length of query: 854
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 749
Effective length of database: 6,280,432
Effective search space: 4704043568
Effective search space used: 4704043568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.5 bits)