RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16314
(854 letters)
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein
biosynthesis, NUC binding, amino acid-binding,
ATP-binding, metal-binding; HET: G5A EPE; 1.90A
{Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A*
3hxw_A* 3hxx_A* 3hxy_A*
Length = 441
Score = 337 bits (866), Expect = e-107
Identities = 129/333 (38%), Positives = 176/333 (52%), Gaps = 61/333 (18%)
Query: 155 SFGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
+F D+F K H V SS ++P +DPTLLF NAGMNQ+K +FLG N RA +
Sbjct: 10 AFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNY-----SRATTS 64
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPG--SMKDNF--------WEMGETG 263
Q+C+RAGGKHNDL++VG HHTFFE+L G S D F W + T
Sbjct: 65 QRCVRAGGKHNDLENVGYTARHHTFFEML-------GNFSFGDYFKLDAILFAWLL-LTS 116
Query: 264 PCGPCSELHYDRIGGGRNAADLV---NQDDPAY-----KADLLPSKLTRL---ENQRSMK 312
L +R+ V DD AY + + ++ R+ +
Sbjct: 117 E--KWFALPKERL--------WVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYAS 166
Query: 313 DNFWEMGETGPCGPCSELHYDR---IGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDG 369
DNFW+MG+TGPCGPC+E+ YD I GG +D +EIWN+VF+Q+NR+ DG
Sbjct: 167 DNFWQMGDTGPCGPCTEIFYDHGDHIWGGPP--GSPEEDGDRYIEIWNIVFMQFNRQADG 224
Query: 370 SLKPLPKKHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDK 429
+++PLPK +D MG ER+ +V+Q SNYD D+F L +A+ K TGA
Sbjct: 225 TMEPLPKPSVDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLS-------- 276
Query: 430 EGIDMAYRVLADHARTLTIALADGGRPDNTGRG 462
+ + RV+ADH R+ +ADG P N RG
Sbjct: 277 ---NKSLRVIADHIRSCAFLIADGVMPSNENRG 306
Score = 180 bits (458), Expect = 2e-49
Identities = 59/101 (58%), Positives = 70/101 (69%), Gaps = 6/101 (5%)
Query: 2 DFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQK 61
DFF K H V SS ++P +DPTLLF NAGMNQ+K +FLG N RA +Q+
Sbjct: 13 DFF-HSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNY-----SRATTSQR 66
Query: 62 CIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
C+RAGGKHNDL++VG HHTFFEMLGN+SFGDYFK I
Sbjct: 67 CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAI 107
Score = 141 bits (358), Expect = 3e-36
Identities = 54/157 (34%), Positives = 73/157 (46%), Gaps = 42/157 (26%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
++PLPK +D MG ER+ +++Q SNYD D+F R L
Sbjct: 226 MEPLPKPSVDTAMGLERIAAVLQHVNSNYDIDLF-----------------------RTL 262
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
+T G D + + RV+ADH R+ +ADG P N
Sbjct: 263 IQAVAKVT----------------GATDLS--NKSLRVIADHIRSCAFLIADGVMPSNEN 304
Query: 583 RGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDL 619
RGYVLRRI+RRAVR+G LGAK F LV ++D+
Sbjct: 305 RGYVLRRIIRRAVRHGN-MLGAKETFFYKLVGPLIDV 340
Score = 125 bits (317), Expect = 8e-31
Identities = 37/64 (57%), Positives = 44/64 (68%), Gaps = 5/64 (7%)
Query: 100 KPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDY 159
K +FLG N RA +Q+C+RAGGKHNDL++VG HHTFFEMLGN+SFGDY
Sbjct: 47 KDVFLGLDKRNY-----SRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDY 101
Query: 160 FKKQ 163
FK
Sbjct: 102 FKLD 105
Score = 96.5 bits (241), Expect = 3e-21
Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YVLRRI+RRAVR+G LGAK F LV ++D++G +L + + ++ EEEQ
Sbjct: 307 YVLRRIIRRAVRHGN-MLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQ 365
Query: 830 FLKTLSRGRSLLN 842
F +TL RG +LL+
Sbjct: 366 FARTLERGLALLD 378
Score = 43.7 bits (104), Expect = 2e-04
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 16/57 (28%)
Query: 731 EVCTWAWELLTT--VYKIPADRLYVTYFGG--------HEPAGLEPDLDYVLRRILR 777
+ +AW LLT+ + +P +RL+VT + + G+ + RI+R
Sbjct: 105 DAILFAWLLLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE------RIIR 155
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif,
amino acid binding, ligase; 2.08A {Aquifex aeolicus}
SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A
1ygb_A 3htz_A
Length = 465
Score = 326 bits (839), Expect = e-103
Identities = 126/329 (38%), Positives = 169/329 (51%), Gaps = 67/329 (20%)
Query: 155 SFGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
F +F KK H V S+ ++P +DPTLLF NAGM +K +FLG RA +
Sbjct: 11 LFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPY-----KRATSC 65
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPG--SMKDNF--------WEM--GE 261
QKC+R GKHNDL+ VG HHTFFE+L G S D F WE
Sbjct: 66 QKCLRVSGKHNDLEQVGYTSRHHTFFEML-------GNFSFGDYFKKEAIEYAWEFVTEV 118
Query: 262 TGPCGPCSELHYDRIGGGRNAADLV---NQDDPAY-----KADLLPSKLTRLENQRSMKD 313
L +++ V D+ AY + ++ RL +D
Sbjct: 119 LK-------LPKEKL--------YVSVYKDDEEAYRIWNEHIGIPSERIWRL----GEED 159
Query: 314 NFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKP 373
NFW+MG+ GPCGP SE++ DR G D LEIWNLVF+QYNR+ +G L P
Sbjct: 160 NFWQMGDVGPCGPSSEIYVDR---GEEYEG-----DERYLEIWNLVFMQYNRDENGVLTP 211
Query: 374 LPKKHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGID 433
LP +ID GMG ER+ SV+Q K SN++ D+ PL + ++ +G GE+ + D
Sbjct: 212 LPHPNIDTGMGLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKKY-----GEKFET--D 264
Query: 434 MAYRVLADHARTLTIALADGGRPDNTGRG 462
+A RV+ADH R +T A++DG P N GRG
Sbjct: 265 VALRVIADHLRAITFAISDGVIPSNEGRG 293
Score = 178 bits (454), Expect = 1e-48
Identities = 53/97 (54%), Positives = 64/97 (65%), Gaps = 6/97 (6%)
Query: 2 DFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQK 61
FF +KK H V S+ ++P +DPTLLF NAGM +K +FLG RA + QK
Sbjct: 14 SFF-EKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPY-----KRATSCQK 67
Query: 62 CIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFK 98
C+R GKHNDL+ VG HHTFFEMLGN+SFGDYFK
Sbjct: 68 CLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFK 104
Score = 143 bits (362), Expect = 1e-36
Identities = 55/157 (35%), Positives = 76/157 (48%), Gaps = 38/157 (24%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVL 522
L PLP +ID GMG ER+ S++Q K SN++ D+ L
Sbjct: 209 LTPLPHPNIDTGMGLERIASVLQGKNSNFEIDII-----------------------FPL 245
Query: 523 ADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTG 582
++ G +K D+A RV+ADH R +T A++DG P N G
Sbjct: 246 IQFGEEVS--------------GKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEG 291
Query: 583 RGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDL 619
RGYV+RRILRRA+R+G KLG + V+ VVD+
Sbjct: 292 RGYVIRRILRRAMRFG-YKLGIENPFLYKGVDLVVDI 327
Score = 125 bits (316), Expect = 1e-30
Identities = 36/64 (56%), Positives = 42/64 (65%), Gaps = 5/64 (7%)
Query: 100 KPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDY 159
K +FLG RA + QKC+R GKHNDL+ VG HHTFFEMLGN+SFGDY
Sbjct: 48 KNVFLGLEKRPY-----KRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDY 102
Query: 160 FKKQ 163
FKK+
Sbjct: 103 FKKE 106
Score = 95.0 bits (237), Expect = 1e-20
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YV+RRILRRA+R+G KLG + V+ VVD++ + +PEL + + I+ EE++
Sbjct: 294 YVIRRILRRAMRFG-YKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKR 352
Query: 830 FLKTLSRGRSLLN 842
F+KTL G +
Sbjct: 353 FIKTLKAGMEYIQ 365
Score = 48.7 bits (117), Expect = 6e-06
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 14/55 (25%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVTYFGG--------HEPAGLEPDLDYVLRRILR 777
E +AWE +T V K+P ++LYV+ + +E G+ + RI R
Sbjct: 106 EAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSE------RIWR 154
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Length = 739
Score = 214 bits (548), Expect = 3e-59
Identities = 56/361 (15%), Positives = 92/361 (25%), Gaps = 118/361 (32%)
Query: 155 SFGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFL-GTVDPNSDMAKLVRAVN 212
+ ++F ++ H + V+ + A + ++P G P +
Sbjct: 68 YYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPA-----NPLTI 122
Query: 213 TQKCIRAGGKHNDLDDVGKDVYHHTFFEIL------------------------------ 242
+Q CIR +DLD VG+ H T FE++
Sbjct: 123 SQPCIRL----DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLNELG 178
Query: 243 -PESHIIPGSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKADLLPSK 301
+ I+ K+ W G G GPC E
Sbjct: 179 VKKEDIVY---KEEPWAGG--GNAGPCLEAIVGG-------------------------- 207
Query: 302 LTRLENQRSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFI 361
LE M E+ R ++ N +
Sbjct: 208 ---LE-----VATLVFMNLEEHPEGDIEIKGAR-----------------YRKMDNYIVD 242
Query: 362 QYNRETDGSLKPLPKKHIDCGMGFERLVSVIQDK--RSNYDTDVFVPLFEAIQKGTGAPP 419
+ + E + ++I + N + + + K G
Sbjct: 243 TGYGLERFVWASKGTPTVYDAIFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMG 302
Query: 420 -------YQGRVGEEDKEGIDM-----------AYRVLADHARTLTIALADGGRPDNTGR 461
Q R D G+ + LADH R + L DG P N G
Sbjct: 303 ELRGERLNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGA 362
Query: 462 G 462
G
Sbjct: 363 G 363
Score = 142 bits (359), Expect = 5e-35
Identities = 64/344 (18%), Positives = 107/344 (31%), Gaps = 71/344 (20%)
Query: 453 GGRPDNTGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDK 512
G + G + + +D G G ER V + + YD
Sbjct: 223 EGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGTPTVYDAIFPEVVDTIID-NSNVSFN 281
Query: 513 EGIDMAYRVLA---------DHARTLTIALADGGRPDNTGRGVGEEDKEGIDM-AYRVLA 562
+ R++A R + D G V E + + + LA
Sbjct: 282 REDERVRRIVAESSKLAGIMGELRGERLNQLRKSVADTVGVSVEELEGIVVPLEKVYSLA 341
Query: 563 DHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLLL 622
DH R + L DG P N G GY+ R ++RR++R E+L L+ LV +L
Sbjct: 342 DHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLA-EELELGLDLY-DLVEMHKKIL-- 397
Query: 623 SQG-----KGATIEDTI-------------GLDI--HSITDLQ------------TRGVP 650
G +T+++ + G + + + + G+P
Sbjct: 398 --GFEFDVPLSTVQEILELEKERYRTTVSKGTRLVERLVERKKKLEKDDLIELYDSHGIP 455
Query: 651 P------------TDDSP----------KYRYTPTQPDTADGAYEFEPCEGTVVGLRYNK 688
+ P + Q E+ E
Sbjct: 456 VELAVGIAAEKGAEVEMPKDIYAELAKRHSKAEKVQEKKITLQNEYPATEKLYYDDPTLL 515
Query: 689 QFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEV 732
+F V ++L++S FY E GGQ D G++I + EV
Sbjct: 516 EFEAEVIGVEGDFVILNRSAFYPESGGQDNDVGYLIANGGKFEV 559
Score = 142 bits (359), Expect = 5e-35
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 16/103 (15%)
Query: 2 DFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFL-GTVDPNSDMAKLVRAVNTQ 60
+FF +++ H + V+ + A + ++P G P + +Q
Sbjct: 71 NFF-ERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPA-----NPLTISQ 124
Query: 61 KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGD-----YFK 98
CIR +DLD VG+ H T FEM+ + +F Y+K
Sbjct: 125 PCIRL----DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWK 163
Score = 93.5 bits (233), Expect = 9e-20
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 100 KPIFL-GTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGD 158
+P G P + +Q CIR +DLD VG+ H T FEM+ + +F
Sbjct: 105 QPFVTSGVAPPPA-----NPLTISQPCIRL----DDLDSVGRTGRHLTLFEMMAHHAFNY 155
Query: 159 -----YFKKQ 163
Y+K +
Sbjct: 156 PGKEIYWKNE 165
Score = 88.9 bits (221), Expect = 2e-18
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
Y+ R ++RR++R E+L L+ LV +LG F ++ +I++ E+E+
Sbjct: 364 YLARLMIRRSLRLA-EELELGLDLYD-LVEMHKKILGFEFDVPL---STVQEILELEKER 418
Query: 830 FLKTLSRGRSLLNR 843
+ T+S+G L+ R
Sbjct: 419 YRTTVSKGTRLVER 432
Score = 29.9 bits (68), Expect = 4.6
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 731 EVCTWAWELLTTVYKIPADRLYVT--YFGGHEPAG 763
E + ELL + + + + + G AG
Sbjct: 165 ETVAYCTELLNEL-GVKKEDIVYKEEPWAGGGNAG 198
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Length = 752
Score = 176 bits (447), Expect = 2e-46
Identities = 100/615 (16%), Positives = 177/615 (28%), Gaps = 147/615 (23%)
Query: 156 FGDYFKKQ----HDYVHSSCVIPSDDPTLLFANAGMNQYKP-IFLGTVDPNSDMAKLVRA 210
F +F+ H V V+P +L A + ++P + G DP ++
Sbjct: 66 FLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPAN-----PL 120
Query: 211 VNTQKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSE 270
V +Q IR D+D+VG H T FE++ H +W
Sbjct: 121 VISQPSIR----FTDIDNVGITGRHFTIFEMM-AHHAFNYPGXPIYWM------------ 163
Query: 271 LHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCSEL 330
+ + +L + K+N W G G GP E+
Sbjct: 164 -----------------DETVELAFEFFTKELXMXPEDITFKENPWAGG--GNAGPAFEV 204
Query: 331 HYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGS------------LKPLPKKH 378
Y LE+ LVF+QY + + P+
Sbjct: 205 LYR------------------GLEVATLVFMQYXXAPENAPQDQVVVIXGEKYIPMETXV 246
Query: 379 IDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDK-EGIDMAYR 437
+D G G ERLV + Q + YD + + + + E + G+
Sbjct: 247 VDTGYGLERLVWMSQGTPTAYDAVLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDIED 306
Query: 438 VLADHARTLTIALADGGRPDNTGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFG 497
+ +A G + + ++P
Sbjct: 307 LGDLRYLREQVAKRVGITVEELEKAIRP-------------------------------- 334
Query: 498 TGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRG------VGEEDK 551
+ADH + LT LADG P N G + + +
Sbjct: 335 ------------------YELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIR 376
Query: 552 EGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPRLFSS 611
++ V L I P+ ++ ++ + E L L
Sbjct: 377 HLRELGLEVPLSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGSDLVRR 436
Query: 612 LVNTVVDLL--LLSQGKGATIEDTIGLDIHSITDL-QTRGVPPTDDSPKYRYTPTQPDTA 668
+ + + T ++ GL + ++ + GV Y + +
Sbjct: 437 EIAKLKKKGIKEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAERT 496
Query: 669 DGAYEFEPCEGTVVGLRYNKQFV-----------DSVSSGTEAGILLDKSNFYAEQGGQI 717
E + ++ + + + V ++LD + FY E GGQ
Sbjct: 497 KEEKGEELVDFELLKDLPDTRRLYYEDPFMXEFDAXVLRVIXDWVILDATAFYPEGGGQP 556
Query: 718 YDEGFMIGVNDELEV 732
YD G +I E+ V
Sbjct: 557 YDTGVLIVNGREVXV 571
Score = 99.0 bits (245), Expect = 2e-21
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 17/109 (15%)
Query: 2 DFFMKK--KQHDYVHSSCVIPSDDPTLLFANAGMNQYKP-IFLGTVDPNSDMAKLVRAVN 58
FF H V V+P +L A + ++P + G DP ++ V
Sbjct: 68 RFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPAN-----PLVI 122
Query: 59 TQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGD-----YFKYKPI 102
+Q IR D+D+VG H T FEM+ + +F Y+ + +
Sbjct: 123 SQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETV 167
Score = 65.9 bits (159), Expect = 3e-11
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
Y+ R ++R+++R+ +LG + S +V + L TFPE + I+++I+ EE+
Sbjct: 365 YLARLLIRKSIRHL-RELGLE-VPLSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKX 422
Query: 830 FLKTLSRGRSLLNRNESHLAQ 850
+ +TL RG L+ R + L +
Sbjct: 423 YAETLRRGSDLVRREIAKLKK 443
Score = 64.7 bits (156), Expect = 9e-11
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 15/72 (20%)
Query: 98 KYKP-IFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSF 156
++P + G DP ++ V +Q IR D+D+VG H T FEM+ + +F
Sbjct: 103 DFQPWVISGEADPPAN-----PLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAF 153
Query: 157 GD-----YFKKQ 163
Y+ +
Sbjct: 154 NYPGXPIYWMDE 165
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 3e-07
Identities = 108/649 (16%), Positives = 184/649 (28%), Gaps = 239/649 (36%)
Query: 237 TFFEILPESHIIPGSMKDNFWEMGETGPCGPCS--ELHYDRIGGGRNAADLVNQDDPAYK 294
F +ILPE + F E P + EL +G + LV
Sbjct: 36 QFNKILPEP-------TEGFAADDE-----PTTPAELVGKFLG---YVSSLVEPSKVGQF 80
Query: 295 ADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPDVLE 354
+L LT E ++ N ++H AA L+ ++D +++
Sbjct: 81 DQVLNLCLTEFE-NCYLEGN--------------DIH-------ALAAKLLQENDTTLVK 118
Query: 355 IWNLVFIQYN-RETDGSLKPLPKKHIDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQK 413
L+ R +P KK S LF A+ +
Sbjct: 119 TKELIKNYITARIMAK--RPFDKKS-----------------NS--------ALFRAVGE 151
Query: 414 GTGAPPY-----QGRVGEED--KEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPL 466
G A QG +D +E D+ Y+ L A+ L L
Sbjct: 152 GN-AQLVAIFGGQGNT--DDYFEELRDL-YQTYHVLVGDLIKFSAE---------TLSEL 198
Query: 467 PKKHIDCGMGFER---LVSIIQDKRSNYDTDVFGTGAP---P----YQGRVGEEDKEGID 516
+ +D F + ++ +++ + D D + P P Q
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS-IPISCPLIGVIQ------------ 245
Query: 517 MA-YRV-----------LADHARTLT-----------IALADGGRP--DNTGRGV----- 546
+A Y V L + + T IA D + + +
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 547 -GEEDKEGIDMAYRVLADHARTLTIALADG-GRPDNTGRGYVL------RRILRRAVRYG 598
G E AY + L +L + G P +L + ++ V
Sbjct: 306 IGVRCYE----AYPNTSLPPSILEDSLENNEGVP-----SPMLSISNLTQEQVQDYVNKT 356
Query: 599 TEKLGAKPRLFSSLVNT----VVDLLLLSQGKGATIEDTIGLDIHSITDLQTRGVPPTDD 654
L A ++ SLVN VV G + GL++ L+ P D
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVV--------SGPP-QSLYGLNLT----LRKAKAPSGLD 403
Query: 655 SPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQG 714
+ ++ + + F P V ++ S LL A
Sbjct: 404 QSRIPFSERKL---KFSNRFLP-----VASPFH-------SH------LLVP----ASD- 437
Query: 715 GQIYDEGFMIGVNDELEVCTWAW---ELLTTVYKIPADRLYVTYFGGHEPAGLEPDLDYV 771
+N +L ++ ++ +IP +Y T F G + L +
Sbjct: 438 ----------LINKDLVKNNVSFNAKDI-----QIP---VYDT-FDGSDLRVLSGSISER 478
Query: 772 L-RRILRRAVRYGTEKL-------------GAKPRLFSSLVNTVVDLLG 806
+ I+R V++ E G L L + D G
Sbjct: 479 IVDCIIRLPVKW--ETTTQFKATHILDFGPGGASGL-GVLTHRNKDGTG 524
Score = 49.3 bits (117), Expect = 6e-06
Identities = 91/554 (16%), Positives = 160/554 (28%), Gaps = 196/554 (35%)
Query: 2 DF---FMKKKQHDYVHS-SCVIPSDDPTLL---------FANAGMNQYKPIFLGTVDPNS 48
+F +++ D +H+ + + ++ T L + A + +P NS
Sbjct: 90 EFENCYLEGN--D-IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF---DKKSNS 143
Query: 49 DMAKLVRAVNTQKC-IRA--GGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFK------- 98
L RAV + A GG+ GN DYF+
Sbjct: 144 ---ALFRAVGEGNAQLVAIFGGQ--------------------GN--TDDYFEELRDLYQ 178
Query: 99 -YKPIFLGTVDPNSDM-AKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSF 156
Y + + +++ ++L+R + V+ + W
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAE----------------KVFTQGL--NILEWLE 220
Query: 157 GDYFKKQHDYVHS---SC-VIPSDDPTLL-FAN-------AGMN--QYKPIFLGTVDPNS 202
DY+ S SC +I ++ A+ G + + G +
Sbjct: 221 NPSNTPDKDYLLSIPISCPLI-----GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 203 DMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFF------EILPESHIIPGSMKDNF 256
LV AV I + FF E P + + P ++D+
Sbjct: 276 G---LVTAV----AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS- 327
Query: 257 WEMGETGPCGP---CSELHYDRIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMKD 313
E E P P S L +++ ++ + N PA K + L N
Sbjct: 328 LENNEGVPS-PMLSISNLTQEQV---QDYVNKTNSHLPAGKQVEIS-----LVNGA---K 375
Query: 314 NFWEMGE--TGP----CGPCSELHYDRIGGGRN--------------------------- 340
N +GP G L + G +
Sbjct: 376 NL-----VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 341 ----AADLVNQDDPDVLEIWN---L---VFIQYN----RETDGSLKPLPKKHIDCGMGFE 386
A+DL+N+D +N + V+ ++ R GS+
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE------------- 477
Query: 387 RLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTL 446
R+V I ++T + G G G + +K+G RV+ A TL
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG--TGVRVIV--AGTL 533
Query: 447 TIALADGGRPDNTG 460
D D+ G
Sbjct: 534 -----DINPDDDYG 542
Score = 46.2 bits (109), Expect = 6e-05
Identities = 51/340 (15%), Positives = 96/340 (28%), Gaps = 133/340 (39%)
Query: 602 LGAKPRLFSSLVNTVVD-----------LLLLSQGKGATIEDTI--GLDIHSITDLQTRG 648
L K F V+++V+ L L++ E+ G DIH++
Sbjct: 60 LVGK---FLGYVSSLVEPSKVGQFDQVLNLCLTE-----FENCYLEGNDIHALA----AK 107
Query: 649 VPPTDDSPKYRYTPTQPDTADGAYEFEPCEGTVVGLRYNKQFVDSVSSGTEAGILLDKSN 708
+ +D+ + + N +V G +
Sbjct: 108 LLQENDTT----LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG--------NAQ 155
Query: 709 FYAEQGGQ-IYDEGFMIGVNDEL------------EVCTWAWELLTTVYKIPAD--RLYV 753
A GGQ D+ F +EL ++ ++ E L+ + + D +++
Sbjct: 156 LVAIFGGQGNTDDYF-----EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF- 209
Query: 754 TYFGGHEPAGLE-----------PDLDYVLRRI--------LRRAVRYGT--EKLGAKP- 791
GL PD DY L I + + Y + LG P
Sbjct: 210 -------TQGLNILEWLENPSNTPDKDY-LLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 792 ----RL------------------------FSSLVNTVVDLL---G----DTFPELTKDP 816
L F V + +L G + +P + P
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 817 QSIVDIIDEEEEQFLKT--LS-RGRSLLNRN--ESHLAQC 851
+ D ++ E + LS L + + ++ +
Sbjct: 322 SILEDSLENNEGV--PSPMLSISN---LTQEQVQDYVNKT 356
Score = 37.7 bits (87), Expect = 0.022
Identities = 44/270 (16%), Positives = 67/270 (24%), Gaps = 118/270 (43%)
Query: 32 GMNQYKPIFLGTVDPNSDMAKLV--RA---------------VN---TQKCIRAGGKHND 71
GM+ YK S A+ V RA V I GG+
Sbjct: 1632 GMDLYK---------TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-- 1680
Query: 72 LDDVGKDVYHHTFFEMLGNWSFGDYFKYKPIFLGTVDPNS-------DMAKLVRAVNTQK 124
GK + + + M+ K + IF ++ +S + L TQ
Sbjct: 1681 ----GKRIREN-YSAMIFETIVDGKLKTEKIF-KEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 125 CIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKQHDYV---HSSCVIPSDDPTL- 180
+ + K FE L + D HS L
Sbjct: 1735 ALTL---------MEK-----AAFEDLKSK-----GLIPADATFAGHS----------LG 1765
Query: 181 ----LFANAGMNQYKPIFLGTVDPNSDMAKLVR-----------------------AVNT 213
L + A V + ++V A+N
Sbjct: 1766 EYAALASLAD-----------VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHT--FFEI 241
+ + A L V + V T EI
Sbjct: 1815 GR-VAASFSQEALQYVVERVGKRTGWLVEI 1843
Score = 36.6 bits (84), Expect = 0.047
Identities = 52/291 (17%), Positives = 95/291 (32%), Gaps = 102/291 (35%)
Query: 582 GRG---Y----VLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVD----LLLLSQG-KGAT 629
G G Y + + RA + + G F S+++ V++ L + G KG
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYG-----F-SILDIVINNPVNLTIHFGGEKGKR 1683
Query: 630 I-EDTIGLDIHSITDLQTRGVPP----TDDSPKYRYTP----------TQP-----DTAD 669
I E+ + +I D + + + S Y + TQP + A
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA- 1742
Query: 670 GAYE------FEPCEGTVVGLRYNKQFVDSV--------SSG---TEA--------GILL 704
A+E P + T G S+ + E+ G+ +
Sbjct: 1743 -AFEDLKSKGLIPADATFAGH--------SLGEYAALASLADVMSIESLVEVVFYRGMTM 1793
Query: 705 DKSNFYAEQGGQIYDEGFMIGVN----------DELE-----VCTWAWELLTTV-YKIPA 748
+ E G Y MI +N + L+ V L+ V Y +
Sbjct: 1794 QVAVPRDELGRSNYG---MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE- 1849
Query: 749 DRLYVTYFGGHEPA--GLEPDLDYV-LRRI--LRRAVRYGTEKLGAKPRLF 794
++ YV G A + L+++ L++I + E++ + LF
Sbjct: 1850 NQQYVA--AGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV--EGHLF 1896
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase;
zinc-binding motif, trans-editing enzyme, structural
genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP:
b.43.3.6 d.67.1.2
Length = 216
Score = 49.5 bits (119), Expect = 9e-07
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 686 YNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 727
Y K+ V + ILLD++ FY GGQ +D G + GV
Sbjct: 14 YLKEAKGRVLEIRDNAILLDQTIFYPTGGGQPHDRGTINGVE 55
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 1e-05
Identities = 100/705 (14%), Positives = 207/705 (29%), Gaps = 220/705 (31%)
Query: 223 HNDLD-DVGKDVYHHTFFEILPESHIIPGSMKD-NFWEMGETGPCGPCSELHYDRIGGGR 280
H+ +D + G+ + + + +IL + + + ++ + P S+ D
Sbjct: 4 HHHMDFETGE--HQYQYKDILS--VFEDAFVDNFDCKDVQDM-PKSILSKEEID------ 52
Query: 281 NAADLVNQDDPAYKADLLPSKLTRLENQRS----------MKDNF-WEMGETGPCGPCSE 329
++ D L L +++ ++ N+ + M S
Sbjct: 53 ---HIIMSKDAVSGTLRL---FWTLLSKQEEMVQKFVEEVLRINYKFLM---------SP 97
Query: 330 LHYDRIGGGRNAADLVNQDDPDVLEIWN--LVFIQYN----------RETDGSLKPLPKK 377
+ ++ + Q D ++N VF +YN R+ L+P
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDR----LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 378 HIDCGM-GFER--LV-SVIQDKR--SNYDTDVF----------VPLFEAIQKGTGAPPYQ 421
I G+ G + + V + D +F + E +QK YQ
Sbjct: 154 LI-DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL----YQ 208
Query: 422 GRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGLKPL--PKKHIDCGMGFER 479
ID + +DH+ + + R + L+ L K + +C
Sbjct: 209 ----------IDPNWTSRSDHSSNIKL------RIHSIQAELRRLLKSKPYENC------ 246
Query: 480 LVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRP 539
L ++ +V ++ + + A+ + + L
Sbjct: 247 L--LVLL-------NV--------------QNAKAWN-AFNL---SCKILL--------- 270
Query: 540 DNTGRGVGEEDKEGIDMAYRV-LADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYG 598
T R D + L H+ TLT PD + +L + +
Sbjct: 271 --TTRFKQVTDFLSAATTTHISLDHHSMTLT--------PDEV------KSLLLKYLDCR 314
Query: 599 TEKLGAKPRLFSSLVNTVVDLL--LLSQGKGATIE--DTIGLD-IHSITDLQTRGVPPTD 653
+ L PR + + ++ + G AT + + D + +I + + P +
Sbjct: 315 PQDL---PREVLTTNPRRLSIIAESIRDGL-ATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 654 DSPKYRYTPTQPDTAD----------GAYEFEPCEGTVVGL-------RYNKQFVDSVSS 696
+ P +A V L + K+ S+
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP- 429
Query: 697 GTEAGILLD---KSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYV 753
I L+ K I D N + + D+ +
Sbjct: 430 ----SIYLELKVKLENEYALHRSIVDH-----YNIPKTFDSD------DLIPPYLDQYFY 474
Query: 754 TYFGGHEPAGLEPDLDYVLRRI------LRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGD 807
++ G H P+ + R + L + +R+ + A S++NT+ L
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS----GSILNTLQQL--- 527
Query: 808 TFPELTKDPQSIVDIIDEEEEQFLKTLSRGRSLLNRNESHLAQCP 852
+ K I D D + E+ + + L + E +L
Sbjct: 528 ---KFYKP--YICD-NDPKYERLVNAILD---FLPKIEENLICSK 563
Score = 45.6 bits (107), Expect = 7e-05
Identities = 52/407 (12%), Positives = 117/407 (28%), Gaps = 106/407 (26%)
Query: 72 LDDVGKDVYHHTFFEMLGNWSFGDYFKYK-PIFLGTVDPNSDMAKLVRAVNTQKCIRAGG 130
L +V ++ W + F I L T ++ ++
Sbjct: 250 LLNV-QNAKA---------W---NAFNLSCKILLTTRF-----KQVTDFLSAAT-----T 286
Query: 131 KHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKQHDYVHSSCVIPSDDPTL--LFA----- 183
H LD + +L + + D +P + A
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKY-LD---CRPQDLPREVLTT---NPRRLSIIAESIRD 339
Query: 184 -NAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLD-DVGKDVYHHTFFEI 241
A + +K N D KL + + + N L+ + ++ +
Sbjct: 340 GLATWDNWK-------HVNCD--KLTTII--ESSL------NVLEPAEYRKMFDR--LSV 380
Query: 242 LPESHIIPGSMKDNFW-EMGETGPCGPCSELHYDRIGGGRNAADLVNQDDPAYKA---DL 297
P S IP + W ++ ++ ++LH LV + +
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH---------KYSLVEKQPKESTISIPSI 431
Query: 298 LPSKLTRLENQRSMKDNFWEMGETGPCGPCSELHYDRIGG------GRNAADLVNQDDPD 351
+LEN+ ++ + + +L + G + ++ + +
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 352 VLEIW--NLVFIQ-------YNRETDGSLKPLP------KKHI-DCGMGFERLVSVIQDK 395
+ + + F++ GS+ K +I D +ERLV+ I D
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 396 RSNYDTDVFV-PLFEAIQKGTGAPPYQGRVGEEDKEGI-DMAYRVLA 440
+ ++ + ++ A E I + A++ +
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAE----------DEAIFEEAHKQVQ 588
Score = 30.2 bits (67), Expect = 3.6
Identities = 100/797 (12%), Positives = 202/797 (25%), Gaps = 305/797 (38%)
Query: 1 MDFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQ 60
MDF + Q+ Y ++ ++ F+ D D+ + +++ ++
Sbjct: 7 MDFETGEHQYQYKD---ILS--------------VFEDAFVDNFDCK-DVQDMPKSILSK 48
Query: 61 KCIR--AGGKHND---------LDDVGKDVYHHTFFEMLGNWSFGDY-FKYKPIFLGTVD 108
+ I K L +++ E+L +Y F PI
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI----NYKFLMSPIKTEQRQ 104
Query: 109 PNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGK-DVYHHTFFEMLGNWSFGDYFKKQHDYV 167
P+ + + +ND K +V + L + V
Sbjct: 105 PSMMTRMYIEQRDRL--------YNDNQVFAKYNVSRLQPYLKLRQALLEL---RPAKNV 153
Query: 168 --HSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHND 225
G+ LG+ K A++
Sbjct: 154 LID-----------------GV-------LGS-------GKTWVALDV------------ 170
Query: 226 LDDVGKDVYHHTFFEILPESHIIPGSMKDNFW-EMGETGPCGPCSE----------LHYD 274
V F+I FW + C+ L Y
Sbjct: 171 CLS--YKVQCKMDFKI--------------FWLNLKN------CNSPETVLEMLQKLLYQ 208
Query: 275 RIGGGRNAADLVNQDDPAYKADLLPSKLTRLENQRSMK------DNFWEMGETGPCGPCS 328
+ +D + + + + ++L RL + + N
Sbjct: 209 IDPNWTSRSD--HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ------------ 254
Query: 329 ELHYDRIGGGRNAADLVNQDDPDVLEIWN-----LVFIQYNRETDGSLKPLPKKHI---D 380
+ +N L+ ++ + TD L HI
Sbjct: 255 --------------------NAKAWNAFNLSCKILLTTRFKQVTD-FLSAATTTHISLDH 293
Query: 381 CGMGFER------LVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDM 434
M L+ + + + +P E + P + E ++G+
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQD------LPR-EVLT---TNPRRLSIIAESIRDGLA- 342
Query: 435 AYRVLADHARTLTIALADGGRPDNTGRGLKPLPKKHIDCGMGFERLVSIIQ--------- 485
DN KH++C ++L +II+
Sbjct: 343 --------------------TWDNW---------KHVNC----DKLTTIIESSLNVLEPA 369
Query: 486 DKRSNY-DTDVFGTGAP-PYQ------GRVGEEDKEGI---DMAYRVLADHARTLTIALA 534
+ R + VF A P V + D + Y ++ + TI++
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 535 DGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALAD----------GGRPDNTGRG 584
I + +V ++ L ++ D
Sbjct: 430 S------------------IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 585 YVLRRI---LRRAVRYGTEKLGAKPRLFSSLVNTVVDLLLLSQGK---GATIEDTIGLDI 638
Y I L+ E++ +F +D L + K +T + G +
Sbjct: 472 YFYSHIGHHLKNIEHP--ERMTLFRMVF-------LDFRFL-EQKIRHDSTAWNASGSIL 521
Query: 639 HSITDLQTRGVPPTDDSPKY-RYTPTQPDTADGAYE-FEPCEGTVVGLRYNKQFVDSVSS 696
+++ L+ D+ PKY R A F P + ++ D +
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLV--------NAILDFLPKIEENL---ICSKYTDLLRI 570
Query: 697 GTEAGILLDKSNFYAEQ 713
L+ + E+
Sbjct: 571 A-----LMAEDEAIFEE 582
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase,
protein structure initiative; 2.00A {Clostridium
perfringens}
Length = 241
Score = 43.3 bits (103), Expect = 1e-04
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 686 YNKQF----VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 727
Y K+F ++ + +LLD++ F+ GGQ+ D G + G+
Sbjct: 12 YIKEFKGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDGIK 57
>2l4v_A Cystatin; protease inhibitor, hydrolase inhibitor; NMR {Ananas
comosus}
Length = 135
Score = 31.3 bits (70), Expect = 0.57
Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 16/120 (13%)
Query: 291 PAYKADLLPSKLTRLENQRSMKDNFWEMGETGPCGPCSELHYDRIGGGRNAADLVNQDDP 350
P A+ P+ E + + + P I GG A L N++
Sbjct: 9 PVPAAEEAPAAEAEAEEEEGLHLEDDQEPREHP-----------IMGGIYDAPLNNENGF 57
Query: 351 DVLEIWNLVFIQYNRETDGSLKPLP----KKHIDCGMGFERLVSVIQ-DKRSNYDTDVFV 405
D ++ +YN + + L+ + K+ + GM V V K+ Y+ V+
Sbjct: 58 DKEDLARFAVREYNNKNNALLEFVRVVKAKEQVVSGMMHYLTVEVNDAGKKKLYEAKVWE 117
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 30.6 bits (70), Expect = 2.8
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 678 EGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQI 717
+G+++ L+++K V +G + G+ LD+ + G I
Sbjct: 494 KGSLISLKHHKDDTSVVKTGMDCGLSLDEEKIEFKVGDAI 533
>2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide
isopropylaminohydrolase ATZC, structural genomics,
NYSGXRC, target 9364B; 2.24A {Pseudomonas SP}
Length = 403
Score = 29.9 bits (67), Expect = 3.6
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 748 ADRLYVTYFGGHEPAGLEPDLDYVLRRILRRAVRYG 783
+ + GG +PA E +++ L + A Y
Sbjct: 176 SLDMGCDLVGGVDPATRENNVEGSLDLCFKLAKEYD 211
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 29.2 bits (66), Expect = 7.9
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 11/54 (20%)
Query: 679 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDELEV 732
GTV ++ + + S S G + + + G I D L V
Sbjct: 506 GTVESMQDKGENLKSASRGQKVAMAIKD-----------AVYGKTIHEGDTLYV 548
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix,
structural PSI-2, protein structure initiative; HET:
MSE; 2.02A {Enterococcus faecalis}
Length = 326
Score = 28.8 bits (65), Expect = 8.2
Identities = 11/60 (18%), Positives = 23/60 (38%)
Query: 515 IDMAYRVLADHARTLTIALADGGRPDNTGRGVGEEDKEGIDMAYRVLADHARTLTIALAD 574
+ +A + + A + A D + + V E ++G A V+ L +A +
Sbjct: 197 VRVARHLSEEFAGDSELKQAIDDGQDVSSKDVFEFAEKGDHFALMVVDRVCFYLGLATGN 256
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer,
hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A*
1r4k_A 1si2_A 1si3_A
Length = 861
Score = 29.0 bits (64), Expect = 8.3
Identities = 23/157 (14%), Positives = 42/157 (26%), Gaps = 16/157 (10%)
Query: 75 VGKDVYHHTFFE--MLGNWSFGDYFKYKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKH 132
+ DV F++ + + +S K + + K
Sbjct: 217 LNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQ 276
Query: 133 NDL----DDVGKDVYHHTFFEM------LGNWSFGDYFKKQHDYVHSSCVIPSDDPTLLF 182
+V + H F + + YFK +H V + P L
Sbjct: 277 MKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLV----LRYPHLPCLQV 332
Query: 183 ANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIRA 219
+ Y P+ + + K + T IRA
Sbjct: 333 GQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRA 369
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.425
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,046,524
Number of extensions: 916475
Number of successful extensions: 1951
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1898
Number of HSP's successfully gapped: 56
Length of query: 854
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 752
Effective length of database: 3,853,851
Effective search space: 2898095952
Effective search space used: 2898095952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.2 bits)