RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16314
(854 letters)
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex
aeolicus [TaxId: 63363]}
Length = 236
Score = 211 bits (537), Expect = 2e-63
Identities = 93/252 (36%), Positives = 128/252 (50%), Gaps = 32/252 (12%)
Query: 155 SFGDYF-KKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNT 213
F +F KK H V S+ ++P +DPTLLF NAGM +K +FLG RA +
Sbjct: 10 LFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYK-----RATSC 64
Query: 214 QKCIRAGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHY 273
QKC+R GKHNDL+ VG HHTFFE M N + G+
Sbjct: 65 QKCLRVSGKHNDLEQVGYTSRHHTFFE-----------MLGN-FSFGDYFKKEAIEYAWE 112
Query: 274 DRIGGGRNAADLVNQ--DDPAYKADLLPSKLTRLENQRS----MKDNFWEMGETGPCGPC 327
+ + + +A + ++ + ++R +DNFW+MG+ GPCGP
Sbjct: 113 FVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPS 172
Query: 328 SELHYDRIGGGRNAADLVNQDDPDVLEIWNLVFIQYNRETDGSLKPLPKKHIDCGMGFER 387
SE++ DR + D LEIWNLVF+QYNR+ +G L PLP +ID GMG ER
Sbjct: 173 SEIYVDRGE--------EYEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLER 224
Query: 388 LVSVIQDKRSNY 399
+ SV+Q K SN+
Sbjct: 225 IASVLQGKNSNF 236
Score = 120 bits (303), Expect = 2e-31
Identities = 54/101 (53%), Positives = 66/101 (65%), Gaps = 6/101 (5%)
Query: 2 DFFMKKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQK 61
FF +KK H V S+ ++P +DPTLLF NAGM +K +FLG RA + QK
Sbjct: 13 SFF-EKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYK-----RATSCQK 66
Query: 62 CIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKYKPI 102
C+R GKHNDL+ VG HHTFFEMLGN+SFGDYFK + I
Sbjct: 67 CLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAI 107
Score = 90.5 bits (224), Expect = 6e-21
Identities = 56/178 (31%), Positives = 76/178 (42%), Gaps = 43/178 (24%)
Query: 99 YKPIFLGTVDPNSDMAKLVRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGD 158
+K +FLG RA + QKC+R GKHNDL+ VG HHTFFEMLGN+SFGD
Sbjct: 46 FKNVFLGLEKRPYK-----RATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGD 100
Query: 159 YFKKQHDYVHSSCVIPSDDPTLLFANAGMNQYKPIFLGTVDPNSDMAKLVRAVNTQKCIR 218
YFKK+ + + + K
Sbjct: 101 YFKKEAIEYAWEF---------VTEVLKLPKEKLYV------------------------ 127
Query: 219 AGGKHNDLDDVGKDVYHHTFFEILPESHIIPGSMKDNFWEMGETGPCGPCSELHYDRI 276
+ D ++ + H +P I +DNFW+MG+ GPCGP SE++ DR
Sbjct: 128 --SVYKDDEEAYRIWNEHI---GIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRG 180
Score = 56.6 bits (136), Expect = 2e-09
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 463 LKPLPKKHIDCGMGFERLVSIIQDKRSNY 491
L PLP +ID GMG ER+ S++Q K SN+
Sbjct: 208 LTPLPHPNIDTGMGLERIASVLQGKNSNF 236
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of
alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId:
63363]}
Length = 221
Score = 70.3 bits (171), Expect = 4e-14
Identities = 37/75 (49%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 545 GVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYGTEKLGA 604
G +K D+A RV+ADH R +T A++DG P N GRGYV+RRILRRA+R+G KLG
Sbjct: 17 GKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFGY-KLGI 75
Query: 605 KPRLFSSLVNTVVDL 619
+ V+ VVD+
Sbjct: 76 ENPFLYKGVDLVVDI 90
Score = 66.4 bits (161), Expect = 9e-13
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 400 DTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRVLADHARTLTIALADGGRPDNT 459
+ D+ PL + ++ +G +K D+A RV+ADH R +T A++DG P N
Sbjct: 1 EIDIIFPLIQFGEEVSGKKY-------GEKFETDVALRVIADHLRAITFAISDGVIPSNE 53
Query: 460 GRGLKPL 466
GRG
Sbjct: 54 GRGYVIR 60
Score = 46.8 bits (110), Expect = 3e-06
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 770 YVLRRILRRAVRYGTEKLGAKPRLFSSLVNTVVDLLGDTFPELTKDPQSIVDIIDEEEEQ 829
YV+RRILRRA+R+G KLG + V+ VVD++ + +PEL + + I+ EE++
Sbjct: 57 YVIRRILRRAMRFGY-KLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKR 115
Query: 830 FLKTLSRGRSLLNRNESHLAQ 850
F+KTL G + +
Sbjct: 116 FIKTLKAGMEYIQEVIQKALE 136
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 87
Score = 46.0 bits (109), Expect = 6e-07
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 686 YNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 727
Y K+ V + ILLD++ FY GGQ +D G + GV
Sbjct: 14 YLKEAKGRVLEIRDNAILLDQTIFYPTGGGQPHDRGTINGVE 55
>d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 99
Score = 30.8 bits (70), Expect = 0.17
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 678 EGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAE 712
EG + L+ K V V+ G E G+ + N E
Sbjct: 50 EGEIDSLKRYKDDVREVAQGYECGLTIKNFNDIKE 84
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
N-acetylgalactosaminyltransferase 1, N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 328
Score = 29.5 bits (65), Expect = 1.6
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Query: 701 GILLDKSNFYAEQGGQIYDEGFMIGVNDELEVCTWAWELLTTVYKIPADRLYVTYFGGHE 760
G+ +++ E G YD G I + LE+ W+ T+ + + F
Sbjct: 200 GLFSIDRDYFQEIGT--YDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGH-VFRKAT 256
Query: 761 PAGLEPDLDYVLRRILRRAV 780
P ++ + RR
Sbjct: 257 PYTFPGGTGQIINKNNRRLA 276
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
[TaxId: 274]}
Length = 1504
Score = 29.4 bits (65), Expect = 2.5
Identities = 13/75 (17%), Positives = 20/75 (26%)
Query: 379 IDCGMGFERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPPYQGRVGEEDKEGIDMAYRV 438
D G +LV V + R+ + + RV
Sbjct: 1088 ADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRKRADIEAGLYGRV 1147
Query: 439 LADHARTLTIALADG 453
LA L + L +G
Sbjct: 1148 LAREVEVLGVRLEEG 1162
Score = 28.2 bits (62), Expect = 5.6
Identities = 15/107 (14%), Positives = 27/107 (25%), Gaps = 7/107 (6%)
Query: 453 GGRPDNTGRGLKPLPKKHIDCGMGFERLVSIIQDKRSNYDTDVFGTGAPPYQGRVGEEDK 512
G R L+ D G +LV + + + E +
Sbjct: 1075 GARKGGADTALRT-----ADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTR 1129
Query: 513 EGIDMAYRVLAD--HARTLTIALADGGRPDNTGRGVGEEDKEGIDMA 557
+ + R L + G GR + +D + A
Sbjct: 1130 SLRLRKRADIEAGLYGRVLAREVEVLGVRLEEGRYLSMDDVHLLIKA 1176
>d2fq4a2 a.121.1.1 (A:78-192) Transcriptional regulator BC3163
{Bacillus cereus [TaxId: 1396]}
Length = 115
Score = 26.0 bits (57), Expect = 9.0
Identities = 12/102 (11%), Positives = 30/102 (29%), Gaps = 15/102 (14%)
Query: 560 VLADHARTLTIALADGGRPDNTGRGY----------VLRRILRRAVRYGTEKLGAKPRLF 609
+++ + + +G Y +++L + ++ G K L
Sbjct: 18 LISREGTIINELVGEGQFDSKLAEEYRVRYFQPRRLQAKQLLEKGIKRGELKENLDIELS 77
Query: 610 SSLVNTVVDLLLLSQGKGATIEDTIGLDIHSITDLQTRGVPP 651
L+ + LL G+ +H + G+
Sbjct: 78 IDLIYGPIFYRLLVTGEKLDDS-----YVHDLVINAFEGIRL 114
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.139 0.425
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,376,635
Number of extensions: 167648
Number of successful extensions: 363
Number of sequences better than 10.0: 1
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 19
Length of query: 854
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 761
Effective length of database: 1,130,706
Effective search space: 860467266
Effective search space used: 860467266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.1 bits)