BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16316
(335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 141/305 (46%), Gaps = 26/305 (8%)
Query: 7 VIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV 66
V +Y + +T ++S+ +S +G L S S D I I+ G ++T+ K G+
Sbjct: 26 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 85
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGS 126
+ ++ + AS D T++ + K ++ GH+ V +P + +SGS
Sbjct: 86 SDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 143
Query: 127 YDKTVRLWDLRSPNCQGIMHVSGSRPIAA--FDPEGLIFGVGVNSDTIKLYDVRSF---- 180
+D++VR+WD+++ C + S P++A F+ +G + +++D S
Sbjct: 144 FDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 202
Query: 181 ----DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236
D P +F +KFS +GKYIL +T + ++ +D G+CL+T G
Sbjct: 203 TLIDDDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 250
Query: 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296
N K C K+++SGS D ++IWN + V L H V + +P N
Sbjct: 251 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTEN 309
Query: 297 MMASA 301
++ASA
Sbjct: 310 IIASA 314
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 25/216 (11%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG 160
GHTK V+S+ SP + S S DK +++W + + H G +A
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 161 LIFGVGVNSDTIKLYDVRSFD-----KGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215
L+ + T+K++DV S KG SN+ F F+ I+ +
Sbjct: 96 LLVSAS-DDKTLKIWDVSSGKCLKTLKG-HSNYVFCCN---------FNPQSNLIVSGSF 144
Query: 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHIWNAEKGFK 274
+R +D G+CL+TL + P+ A F D ++S S DG IW+ G
Sbjct: 145 DESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 200
Query: 275 VCVLDADHPSPVQTIQFNP--KFNMMASACTNLAFW 308
+ L D PV ++F+P K+ + A+ L W
Sbjct: 201 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-SKKYGV 66
+++ K K ++D ++++ ++ DG L++S S D I+D G +T+ V
Sbjct: 153 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 212
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL----SPIDDTF 122
++F+ + + A+ +D+T++ K ++ + GH K C+ S +
Sbjct: 213 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGH--KNEKYCIFANFSVTGGKW 268
Query: 123 I-SGSYDKTVRLWDLRSPN----CQGIMHVSGSRPIAAFDPEGLIFGVGVNSD-TIKLY 175
I SGS D V +W+L++ QG H A E +I + +D TIKL+
Sbjct: 269 IVSGSEDNLVYIWNLQTKEIVQKLQG--HTDVVISTACHPTENIIASAALENDKTIKLW 325
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 141/305 (46%), Gaps = 26/305 (8%)
Query: 7 VIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV 66
V +Y + +T ++S+ +S +G L S S D I I+ G ++T+ K G+
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGS 126
+ ++ + AS D T++ + K ++ GH+ V +P + +SGS
Sbjct: 69 SDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Query: 127 YDKTVRLWDLRSPNCQGIMHVSGSRPIAA--FDPEGLIFGVGVNSDTIKLYDVRSF---- 180
+D++VR+WD+++ C + S P++A F+ +G + +++D S
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 181 ----DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236
D P +F +KFS +GKYIL +T + ++ +D G+CL+T G
Sbjct: 186 TLIDDDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Query: 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296
N K C K+++SGS D ++IWN + V L H V + +P N
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTEN 292
Query: 297 MMASA 301
++ASA
Sbjct: 293 IIASA 297
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 25/216 (11%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG 160
GHTK V+S+ SP + S S DK +++W + + H G +A
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 161 LIFGVGVNSDTIKLYDVRSFD-----KGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215
L+ + T+K++DV S KG SN+ F F+ I+ +
Sbjct: 79 LLVSAS-DDKTLKIWDVSSGKCLKTLKG-HSNYVFCCN---------FNPQSNLIVSGSF 127
Query: 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHIWNAEKGFK 274
+R +D G+CL+TL + P+ A F D ++S S DG IW+ G
Sbjct: 128 DESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Query: 275 VCVLDADHPSPVQTIQFNP--KFNMMASACTNLAFW 308
+ L D PV ++F+P K+ + A+ L W
Sbjct: 184 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-SKKYGV 66
+++ K K ++D ++++ ++ DG L++S S D I+D G +T+ V
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 195
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL----SPIDDTF 122
++F+ + + A+ +D+T++ K ++ + GH K C+ S +
Sbjct: 196 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGH--KNEKYCIFANFSVTGGKW 251
Query: 123 I-SGSYDKTVRLWDLRSPN----CQGIMHVSGSRPIAAFDPEGLIFGVGVNSD-TIKLY 175
I SGS D V +W+L++ QG H A E +I + +D TIKL+
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQG--HTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 142/305 (46%), Gaps = 26/305 (8%)
Query: 7 VIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV 66
V +Y + +T ++S+ +S +G L S S D I I+ G ++T+ K G+
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGS 126
+ ++ + AS D T++ + K ++ GH+ V +P + +SGS
Sbjct: 69 SDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Query: 127 YDKTVRLWDLRSPNCQGIMHVSGSRPIAA--FDPEGLIFGVGVNSDTIKLYDVRSF---- 180
+D++VR+WD+++ C + + S P++A F+ +G + +++D S
Sbjct: 127 FDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 181 ----DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236
D P +F +KFS +GKYIL +T + ++ +D G+CL+T G
Sbjct: 186 TLIDDDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Query: 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296
N K C K+++SGS D ++IWN + V L H V + +P N
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTEN 292
Query: 297 MMASA 301
++ASA
Sbjct: 293 IIASA 297
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 25/216 (11%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG 160
GHTK V+S+ SP + S S DK +++W + + H G +A
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 161 LIFGVGVNSDTIKLYDVRSFD-----KGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215
L+ + T+K++DV S KG SN+ F F+ I+ +
Sbjct: 79 LLVSAS-DDKTLKIWDVSSGKCLKTLKG-HSNYVFCCN---------FNPQSNLIVSGSF 127
Query: 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHIWNAEKGFK 274
+R +D G+CL+TL + P+ A F D ++S S DG IW+ G
Sbjct: 128 DESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Query: 275 VCVLDADHPSPVQTIQFNP--KFNMMASACTNLAFW 308
+ L D PV ++F+P K+ + A+ L W
Sbjct: 184 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-SKKYGV 66
+++ K K ++D ++++ ++ DG L++S S D I+D G +T+ V
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 195
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL----SPIDDTF 122
++F+ + + A+ +D+T++ K ++ + GH K C+ S +
Sbjct: 196 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGH--KNEKYCIFANFSVTGGKW 251
Query: 123 I-SGSYDKTVRLWDLRSPN----CQGIMHVSGSRPIAAFDPEGLIFGVGVNSD-TIKLY 175
I SGS D V +W+L++ QG H A E +I + +D TIKL+
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQG--HTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 141/305 (46%), Gaps = 26/305 (8%)
Query: 7 VIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV 66
V +Y + +T ++S+ +S +G L S S D I I+ G ++T+ K G+
Sbjct: 8 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 67
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGS 126
+ ++ + AS D T++ + K ++ GH+ V +P + +SGS
Sbjct: 68 SDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 125
Query: 127 YDKTVRLWDLRSPNCQGIMHVSGSRPIAA--FDPEGLIFGVGVNSDTIKLYDVRSF---- 180
+D++VR+WD+++ C + S P++A F+ +G + +++D S
Sbjct: 126 FDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 184
Query: 181 ----DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236
D P +F +KFS +GKYIL +T + ++ +D G+CL+T G
Sbjct: 185 TLIDDDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 232
Query: 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296
N K C K+++SGS D ++IWN + V L H V + +P N
Sbjct: 233 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTEN 291
Query: 297 MMASA 301
++ASA
Sbjct: 292 IIASA 296
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 25/216 (11%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG 160
GHTK V+S+ SP + S S DK +++W + + H G +A
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 161 LIFGVGVNSDTIKLYDVRSFD-----KGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215
L+ + T+K++DV S KG SN+ F F+ I+ +
Sbjct: 78 LLVSAS-DDKTLKIWDVSSGKCLKTLKG-HSNYVFCCN---------FNPQSNLIVSGSF 126
Query: 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHIWNAEKGFK 274
+R +D G+CL+TL + P+ A F D ++S S DG IW+ G
Sbjct: 127 DESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 182
Query: 275 VCVLDADHPSPVQTIQFNP--KFNMMASACTNLAFW 308
+ L D PV ++F+P K+ + A+ L W
Sbjct: 183 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 218
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-SKKYGV 66
+++ K K ++D ++++ ++ DG L++S S D I+D G +T+ V
Sbjct: 135 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 194
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL----SPIDDTF 122
++F+ + + A+ +D+T++ K ++ + GH K C+ S +
Sbjct: 195 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGH--KNEKYCIFANFSVTGGKW 250
Query: 123 I-SGSYDKTVRLWDLRSPN----CQGIMHVSGSRPIAAFDPEGLIFGVGVNSD-TIKLY 175
I SGS D V +W+L++ QG H A E +I + +D TIKL+
Sbjct: 251 IVSGSEDNLVYIWNLQTKEIVQKLQG--HTDVVISTACHPTENIIASAALENDKTIKLW 307
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 141/305 (46%), Gaps = 26/305 (8%)
Query: 7 VIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV 66
V +Y + +T ++S+ +S +G L S S D I I+ G ++T+ K G+
Sbjct: 14 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 73
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGS 126
+ ++ + AS D T++ + K ++ GH+ V +P + +SGS
Sbjct: 74 SDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 131
Query: 127 YDKTVRLWDLRSPNCQGIMHVSGSRPIAA--FDPEGLIFGVGVNSDTIKLYDVRSF---- 180
+D++VR+WD+++ C + S P++A F+ +G + +++D S
Sbjct: 132 FDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 190
Query: 181 ----DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236
D P +F +KFS +GKYIL +T + ++ +D G+CL+T G
Sbjct: 191 TLIDDDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 238
Query: 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296
N K C K+++SGS D ++IWN + V L H V + +P N
Sbjct: 239 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTEN 297
Query: 297 MMASA 301
++ASA
Sbjct: 298 IIASA 302
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 25/216 (11%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG 160
GHTK V+S+ SP + S S DK +++W + + H G +A
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 161 LIFGVGVNSDTIKLYDVRSFD-----KGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215
L+ + T+K++DV S KG SN+ F F+ I+ +
Sbjct: 84 LLVSAS-DDKTLKIWDVSSGKCLKTLKG-HSNYVFCCN---------FNPQSNLIVSGSF 132
Query: 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHIWNAEKGFK 274
+R +D G+CL+TL + P+ A F D ++S S DG IW+ G
Sbjct: 133 DESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 188
Query: 275 VCVLDADHPSPVQTIQFNP--KFNMMASACTNLAFW 308
+ L D PV ++F+P K+ + A+ L W
Sbjct: 189 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-SKKYGV 66
+++ K K ++D ++++ ++ DG L++S S D I+D G +T+ V
Sbjct: 141 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 200
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL----SPIDDTF 122
++F+ + + A+ +D+T++ K ++ + GH K C+ S +
Sbjct: 201 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGH--KNEKYCIFANFSVTGGKW 256
Query: 123 I-SGSYDKTVRLWDLRSPN----CQGIMHVSGSRPIAAFDPEGLIFGVGVNSD-TIKLY 175
I SGS D V +W+L++ QG H A E +I + +D TIKL+
Sbjct: 257 IVSGSEDNLVYIWNLQTKEIVQKLQG--HTDVVISTACHPTENIIASAALENDKTIKLW 313
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 141/305 (46%), Gaps = 26/305 (8%)
Query: 7 VIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV 66
V +Y + +T ++S+ +S +G L S S D I I+ G ++T+ K G+
Sbjct: 10 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 69
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGS 126
+ ++ + AS D T++ + K ++ GH+ V +P + +SGS
Sbjct: 70 SDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 127
Query: 127 YDKTVRLWDLRSPNCQGIMHVSGSRPIAA--FDPEGLIFGVGVNSDTIKLYDVRSF---- 180
+D++VR+WD+++ C + S P++A F+ +G + +++D S
Sbjct: 128 FDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 186
Query: 181 ----DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236
D P +F +KFS +GKYIL +T + ++ +D G+CL+T G
Sbjct: 187 TLIDDDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 234
Query: 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296
N K C K+++SGS D ++IWN + V L H V + +P N
Sbjct: 235 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTEN 293
Query: 297 MMASA 301
++ASA
Sbjct: 294 IIASA 298
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 25/216 (11%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG 160
GHTK V+S+ SP + S S DK +++W + + H G +A
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 161 LIFGVGVNSDTIKLYDVRSFD-----KGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215
L+ + T+K++DV S KG SN+ F F+ I+ +
Sbjct: 80 LLVSAS-DDKTLKIWDVSSGKCLKTLKG-HSNYVFCCN---------FNPQSNLIVSGSF 128
Query: 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHIWNAEKGFK 274
+R +D G+CL+TL + P+ A F D ++S S DG IW+ G
Sbjct: 129 DESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 184
Query: 275 VCVLDADHPSPVQTIQFNP--KFNMMASACTNLAFW 308
+ L D PV ++F+P K+ + A+ L W
Sbjct: 185 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 220
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-SKKYGV 66
+++ K K ++D ++++ ++ DG L++S S D I+D G +T+ V
Sbjct: 137 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 196
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL----SPIDDTF 122
++F+ + + A+ +D+T++ K ++ + GH K C+ S +
Sbjct: 197 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGH--KNEKYCIFANFSVTGGKW 252
Query: 123 I-SGSYDKTVRLWDLRSPN----CQGIMHVSGSRPIAAFDPEGLIFGVGVNSD-TIKLY 175
I SGS D V +W+L++ QG H A E +I + +D TIKL+
Sbjct: 253 IVSGSEDNLVYIWNLQTKEIVQKLQG--HTDVVISTACHPTENIIASAALENDKTIKLW 309
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 141/305 (46%), Gaps = 26/305 (8%)
Query: 7 VIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV 66
V +Y + +T ++S+ +S +G L S S D I I+ G ++T+ K G+
Sbjct: 5 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 64
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGS 126
+ ++ + AS D T++ + K ++ GH+ V +P + +SGS
Sbjct: 65 SDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 122
Query: 127 YDKTVRLWDLRSPNCQGIMHVSGSRPIAA--FDPEGLIFGVGVNSDTIKLYDVRSF---- 180
+D++VR+WD+++ C + S P++A F+ +G + +++D S
Sbjct: 123 FDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 181
Query: 181 ----DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236
D P +F +KFS +GKYIL +T + ++ +D G+CL+T G
Sbjct: 182 TLIDDDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 229
Query: 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296
N K C K+++SGS D ++IWN + V L H V + +P N
Sbjct: 230 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTEN 288
Query: 297 MMASA 301
++ASA
Sbjct: 289 IIASA 293
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 25/216 (11%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG 160
GHTK V+S+ SP + S S DK +++W + + H G +A
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 161 LIFGVGVNSDTIKLYDVRSFD-----KGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215
L+ + T+K++DV S KG SN+ F F+ I+ +
Sbjct: 75 LLVSAS-DDKTLKIWDVSSGKCLKTLKG-HSNYVFCCN---------FNPQSNLIVSGSF 123
Query: 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHIWNAEKGFK 274
+R +D G+CL+TL + P+ A F D ++S S DG IW+ G
Sbjct: 124 DESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 179
Query: 275 VCVLDADHPSPVQTIQFNP--KFNMMASACTNLAFW 308
+ L D PV ++F+P K+ + A+ L W
Sbjct: 180 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-SKKYGV 66
+++ K K ++D ++++ ++ DG L++S S D I+D G +T+ V
Sbjct: 132 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 191
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL----SPIDDTF 122
++F+ + + A+ +D+T++ K ++ + GH K C+ S +
Sbjct: 192 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGH--KNEKYCIFANFSVTGGKW 247
Query: 123 I-SGSYDKTVRLWDLRSPN----CQGIMHVSGSRPIAAFDPEGLIFGVGVNSD-TIKLY 175
I SGS D V +W+L++ QG H A E +I + +D TIKL+
Sbjct: 248 IVSGSEDNLVYIWNLQTKEIVQKLQG--HTDVVISTACHPTENIIASAALENDKTIKLW 304
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 141/305 (46%), Gaps = 26/305 (8%)
Query: 7 VIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV 66
V +Y + +T ++S+ +S +G L S S D I I+ G ++T+ K G+
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGS 126
+ ++ + AS D T++ + K ++ GH+ V +P + +SGS
Sbjct: 75 SDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 127 YDKTVRLWDLRSPNCQGIMHVSGSRPIAA--FDPEGLIFGVGVNSDTIKLYDVRSF---- 180
+D++VR+WD+++ C + S P++A F+ +G + +++D S
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 181 ----DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236
D P +F +KFS +GKYIL +T + ++ +D G+CL+T G
Sbjct: 192 TLIDDDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296
N K C K+++SGS D ++IWN + V L H V + +P N
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTEN 298
Query: 297 MMASA 301
++ASA
Sbjct: 299 IIASA 303
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 25/216 (11%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG 160
GHTK V+S+ SP + S S DK +++W + + H G +A
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 161 LIFGVGVNSDTIKLYDVRSFD-----KGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215
L+ + T+K++DV S KG SN+ F F+ I+ +
Sbjct: 85 LLVSAS-DDKTLKIWDVSSGKCLKTLKG-HSNYVFCCN---------FNPQSNLIVSGSF 133
Query: 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHIWNAEKGFK 274
+R +D G+CL+TL + P+ A F D ++S S DG IW+ G
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 275 VCVLDADHPSPVQTIQFNP--KFNMMASACTNLAFW 308
+ L D PV ++F+P K+ + A+ L W
Sbjct: 190 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-SKKYGV 66
+++ K K ++D ++++ ++ DG L++S S D I+D G +T+ V
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL----SPIDDTF 122
++F+ + + A+ +D+T++ K ++ + GH K C+ S +
Sbjct: 202 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGH--KNEKYCIFANFSVTGGKW 257
Query: 123 I-SGSYDKTVRLWDLRSPN----CQGIMHVSGSRPIAAFDPEGLIFGVGVNSD-TIKLY 175
I SGS D V +W+L++ QG H A E +I + +D TIKL+
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQG--HTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 141/305 (46%), Gaps = 26/305 (8%)
Query: 7 VIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV 66
V +Y + +T ++S+ +S +G L S S D I I+ G ++T+ K G+
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGS 126
+ ++ + AS D T++ + K ++ GH+ V +P + +SGS
Sbjct: 75 SDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 127 YDKTVRLWDLRSPNCQGIMHVSGSRPIAA--FDPEGLIFGVGVNSDTIKLYDVRSF---- 180
+D++VR+WD+++ C + S P++A F+ +G + +++D S
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 181 ----DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236
D P +F +KFS +GKYIL +T + ++ +D G+CL+T G
Sbjct: 192 TLIDDDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296
N K C K+++SGS D ++IWN + V L H V + +P N
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTEN 298
Query: 297 MMASA 301
++ASA
Sbjct: 299 IIASA 303
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 25/216 (11%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG 160
GHTK V+S+ SP + S S DK +++W + + H G +A
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 161 LIFGVGVNSDTIKLYDVRSFD-----KGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215
L+ + T+K++DV S KG SN+ F F+ I+ +
Sbjct: 85 LLVSAS-DDKTLKIWDVSSGKCLKTLKG-HSNYVFCCN---------FNPQSNLIVSGSF 133
Query: 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHIWNAEKGFK 274
+R +D G+CL+TL + P+ A F D ++S S DG IW+ G
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 275 VCVLDADHPSPVQTIQFNP--KFNMMASACTNLAFW 308
+ L D PV ++F+P K+ + A+ L W
Sbjct: 190 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-SKKYGV 66
+++ K K ++D ++++ ++ DG L++S S D I+D G +T+ V
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL----SPIDDTF 122
++F+ + + A+ +D+T++ K ++ + GH K C+ S +
Sbjct: 202 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGH--KNEKYCIFANFSVTGGKW 257
Query: 123 I-SGSYDKTVRLWDLRSPN----CQGIMHVSGSRPIAAFDPEGLIFGVGVNSD-TIKLY 175
I SGS D V +W+L++ QG H A E +I + +D TIKL+
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQG--HTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 137/292 (46%), Gaps = 26/292 (8%)
Query: 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAI 79
+T ++S+ +S +G L S S D I I+ G ++T+ K G+ + ++ +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 80 HASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP 139
AS D T++ + K ++ GH+ V +P + +SGS+D++VR+WD+++
Sbjct: 85 SASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 140 NCQGIMHVSGSRPIAA--FDPEGLIFGVGVNSDTIKLYDVRSF--------DKGPFSNFK 189
C + S P++A F+ +G + +++D S D P +F
Sbjct: 143 KCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF- 200
Query: 190 FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249
+KFS +GKYIL +T + ++ +D G+CL+T G N K C
Sbjct: 201 -----------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 249
Query: 250 PDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
K+++SGS D ++IWN + V L H V + +P N++ASA
Sbjct: 250 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIASA 300
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 25/216 (11%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG 160
GHTK V+S+ SP + S S DK +++W + + H G +A
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 161 LIFGVGVNSDTIKLYDVRSFD-----KGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215
L+ + T+K++DV S KG SN+ F F+ I+ +
Sbjct: 82 LLVSAS-DDKTLKIWDVSSGKCLKTLKG-HSNYVFCCN---------FNPQSNLIVSGSF 130
Query: 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHIWNAEKGFK 274
+R +D G+CL+TL + P+ A F D ++S S DG IW+ G
Sbjct: 131 DESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 275 VCVLDADHPSPVQTIQFNP--KFNMMASACTNLAFW 308
+ L D PV ++F+P K+ + A+ L W
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY-GV 66
+++ K K ++D ++++ ++ DG L++S S D I+D G +T+ V
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL----SPIDDTF 122
++F+ + + A+ +D+T++ K ++ + GH K C+ S +
Sbjct: 199 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGH--KNEKYCIFANFSVTGGKW 254
Query: 123 I-SGSYDKTVRLWDLRSPN----CQGIMHVSGSRPIAAFDPEGLIFGVGVNSD-TIKLY 175
I SGS D V +W+L++ QG H A E +I + +D TIKLY
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQG--HTDVVISTACHPTENIIASAALENDKTIKLY 311
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 141/305 (46%), Gaps = 26/305 (8%)
Query: 7 VIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV 66
V +Y + +T ++S+ +S +G L S S D I I+ G ++T+ K G+
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGS 126
+ ++ + AS D T++ + K ++ GH+ V +P + +SGS
Sbjct: 75 SDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 127 YDKTVRLWDLRSPNCQGIMHVSGSRPIAA--FDPEGLIFGVGVNSDTIKLYDVRSF---- 180
+D++VR+WD+++ C + S P++A F+ +G + +++D S
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 181 ----DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236
D P +F +KFS +GKYIL +T + ++ +D G+CL+T G
Sbjct: 192 TLIDDDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296
N K C K+++SGS D ++IWN + V L H V + +P N
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTEN 298
Query: 297 MMASA 301
++ASA
Sbjct: 299 IIASA 303
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 25/216 (11%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG 160
GHTK V+S+ SP + S S DK +++W + + H G +A
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 161 LIFGVGVNSDTIKLYDVRSFD-----KGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215
L+ + T+K++DV S KG SN+ F F+ I+ +
Sbjct: 85 LLVSAS-DDKTLKIWDVSSGKCLKTLKG-HSNYVFCCN---------FNPQSNLIVSGSF 133
Query: 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHIWNAEKGFK 274
+R +D G+CL+TL + P+ A F D ++S S DG IW+ G
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 275 VCVLDADHPSPVQTIQFNP--KFNMMASACTNLAFW 308
+ L D PV ++F+P K+ + A+ L W
Sbjct: 190 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-SKKYGV 66
+++ K K ++D ++++ ++ DG L++S S D I+D G +T+ V
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL----SPIDDTF 122
++F+ + + A+ +D+T++ K ++ + GH K C+ S +
Sbjct: 202 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGH--KNEKYCIFANFSVTGGKW 257
Query: 123 I-SGSYDKTVRLWDLRSPN----CQGIMHVSGSRPIAAFDPEGLIFGVGVNSD-TIKLY 175
I SGS D V +W+L++ QG H A E +I + +D TIKL+
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQG--HTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 137/292 (46%), Gaps = 26/292 (8%)
Query: 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAI 79
+T ++S+ +S +G L S S D I I+ G ++T+ K G+ + ++ +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 80 HASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP 139
AS D T++ + K ++ GH+ V +P + +SGS+D++VR+WD+++
Sbjct: 85 SASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 140 NCQGIMHVSGSRPIAA--FDPEGLIFGVGVNSDTIKLYDVRSF--------DKGPFSNFK 189
C + S P++A F+ +G + +++D S D P +F
Sbjct: 143 KCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF- 200
Query: 190 FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249
+KFS +GKYIL +T + ++ +D G+CL+T G N K C
Sbjct: 201 -----------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 249
Query: 250 PDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
K+++SGS D ++IWN + V L H V + +P N++ASA
Sbjct: 250 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIASA 300
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 25/216 (11%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG 160
GHTK V+S+ SP + S S DK +++W + + H G +A
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 161 LIFGVGVNSDTIKLYDVRSFD-----KGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215
L+ + T+K++DV S KG SN+ F F+ I+ +
Sbjct: 82 LLVSAS-DDKTLKIWDVSSGKCLKTLKG-HSNYVFCCN---------FNPQSNLIVSGSF 130
Query: 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHIWNAEKGFK 274
+R +D G+CL+TL + P+ A F D ++S S DG IW+ G
Sbjct: 131 DESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 275 VCVLDADHPSPVQTIQFNP--KFNMMASACTNLAFW 308
+ L D PV ++F+P K+ + A+ L W
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY-GV 66
+++ K K ++D ++++ ++ DG L++S S D I+D G +T+ V
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL----SPIDDTF 122
++F+ + + A+ +D+T++ K ++ + GH K C+ S +
Sbjct: 199 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGH--KNEKYCIFANFSVTGGKW 254
Query: 123 I-SGSYDKTVRLWDLRSPN----CQGIMHVSGSRPIAAFDPEGLIFGVGVNSD-TIKLY 175
I SGS D V +W+L++ QG H A E +I + +D TIKL+
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQG--HTDVVISTACHPTENIIASAALENDKTIKLF 311
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 142/305 (46%), Gaps = 26/305 (8%)
Query: 7 VIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV 66
V +Y + +T ++S+ +S +G L S S D I I+ G ++T+ K G+
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGS 126
+ ++ + AS D T++ + K ++ GH+ V +P + +SGS
Sbjct: 72 SDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 127 YDKTVRLWDLRSPNCQGIMHVSGSRPIAA--FDPEGLIFGVGVNSDTIKLYDVRSF---- 180
+D++VR+WD+++ C + + S P++A F+ +G + +++D S
Sbjct: 130 FDESVRIWDVKTGMCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 181 ----DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236
D P +F +KFS +GKYIL +T + ++ +D G+CL+T G
Sbjct: 189 TLIDDDNPPVSF------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296
N K C K+++SGS D ++IWN + V L H V + +P N
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG-HTDVVISTACHPTEN 295
Query: 297 MMASA 301
++ASA
Sbjct: 296 IIASA 300
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 17/179 (9%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-SKKYGV 66
+++ K ++D ++++ ++ DG L++S S D I+D G +T+ V
Sbjct: 139 VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL----SPIDDTF 122
++F+ + + A+ +D+T++ K ++ + GH K C+ S +
Sbjct: 199 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGH--KNEKYCIFANFSVTGGKW 254
Query: 123 I-SGSYDKTVRLWDLRSPN----CQGIMHVSGSRPIAAFDPEGLIFGVGVNSD-TIKLY 175
I SGS D V +W+L++ QG H A E +I + +D TIKL+
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQG--HTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 138/292 (47%), Gaps = 26/292 (8%)
Query: 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAI 79
+T ++S+ +S +G L S S D I I+ G ++T+ K G+ + ++ +
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 80 HASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP 139
AS D T++ + K ++ GH+ V +P + +SGS+D++VR+WD+++
Sbjct: 104 SASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 161
Query: 140 NCQGIMHVSGSRPIAA--FDPEGLIFGVGVNSDTIKLYDVRSF--------DKGPFSNFK 189
C + + S P++A F+ +G + +++D S D P +F
Sbjct: 162 KCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF- 219
Query: 190 FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249
+KFS +GKYIL +T + ++ +D G+CL+T G N K C
Sbjct: 220 -----------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 268
Query: 250 PDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
K+++SGS D ++IWN + V L H V + +P N++ASA
Sbjct: 269 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIASA 319
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 25/216 (11%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG 160
GHTK V+S+ SP + S S DK +++W + + H G +A
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 161 LIFGVGVNSDTIKLYDVRSFD-----KGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215
L+ + T+K++DV S KG SN+ F F+ I+ +
Sbjct: 101 LLVSAS-DDKTLKIWDVSSGKCLKTLKG-HSNYVFCCN---------FNPQSNLIVSGSF 149
Query: 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHIWNAEKGFK 274
+R +D G+CL+TL + P+ A F D ++S S DG IW+ G
Sbjct: 150 DESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 205
Query: 275 VCVLDADHPSPVQTIQFNP--KFNMMASACTNLAFW 308
+ L D PV ++F+P K+ + A+ L W
Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-SKKYGV 66
+++ K K ++D ++++ ++ DG L++S S D I+D G +T+ V
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 217
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL----SPIDDTF 122
++F+ + + A+ +D+T++ K ++ + GH K C+ S +
Sbjct: 218 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGH--KNEKYCIFANFSVTGGKW 273
Query: 123 I-SGSYDKTVRLWDLRSPN----CQGIMHVSGSRPIAAFDPEGLIFGVGVNSD-TIKLY 175
I SGS D V +W+L++ QG H A E +I + +D TIKL+
Sbjct: 274 IVSGSEDNLVYIWNLQTKEIVQKLQG--HTDVVISTACHPTENIIASAALENDKTIKLW 330
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 137/292 (46%), Gaps = 26/292 (8%)
Query: 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAI 79
+T ++S+ +S +G L S S D I I+ G ++T+ K G+ + ++ +
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 105
Query: 80 HASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP 139
AS D T++ + K ++ GH+ V +P + +SGS+D++VR+WD+++
Sbjct: 106 SASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 163
Query: 140 NCQGIMHVSGSRPIAA--FDPEGLIFGVGVNSDTIKLYDVRSF--------DKGPFSNFK 189
C + S P++A F+ +G + +++D S D P +F
Sbjct: 164 KCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF- 221
Query: 190 FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249
+KFS +GKYIL +T + ++ +D G+CL+T G N K C
Sbjct: 222 -----------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 270
Query: 250 PDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
K+++SGS D ++IWN + V L H V + +P N++ASA
Sbjct: 271 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIASA 321
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 25/216 (11%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG 160
GHTK V+S+ SP + S S DK +++W + + H G +A
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 161 LIFGVGVNSDTIKLYDVRSFD-----KGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215
L+ + T+K++DV S KG SN+ F F+ I+ +
Sbjct: 103 LLVSAS-DDKTLKIWDVSSGKCLKTLKG-HSNYVFCCN---------FNPQSNLIVSGSF 151
Query: 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHIWNAEKGFK 274
+R +D G+CL+TL + P+ A F D ++S S DG IW+ G
Sbjct: 152 DESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 207
Query: 275 VCVLDADHPSPVQTIQFNP--KFNMMASACTNLAFW 308
+ L D PV ++F+P K+ + A+ L W
Sbjct: 208 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 243
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-SKKYGV 66
+++ K K ++D ++++ ++ DG L++S S D I+D G +T+ V
Sbjct: 160 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 219
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL----SPIDDTF 122
++F+ + + A+ +D+T++ K ++ + GH K C+ S +
Sbjct: 220 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGH--KNEKYCIFANFSVTGGKW 275
Query: 123 I-SGSYDKTVRLWDLRSPN----CQGIMHVSGSRPIAAFDPEGLIFGVGVNSD-TIKLY 175
I SGS D V +W+L++ QG H A E +I + +D TIKL+
Sbjct: 276 IVSGSEDNLVYIWNLQTKEIVQKLQG--HTDVVISTACHPTENIIASAALENDKTIKLW 332
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 137/292 (46%), Gaps = 26/292 (8%)
Query: 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAI 79
+T ++S+ +S +G L + S D I I+ G ++T+ K G+ + ++ +
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 80 HASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP 139
AS D T++ + K ++ GH+ V +P + +SGS+D++VR+WD+++
Sbjct: 85 SASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 140 NCQGIMHVSGSRPIAA--FDPEGLIFGVGVNSDTIKLYDVRSF--------DKGPFSNFK 189
C + S P++A F+ +G + +++D S D P +F
Sbjct: 143 KCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF- 200
Query: 190 FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249
+KFS +GKYIL +T + ++ +D G+CL+T G N K C
Sbjct: 201 -----------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 249
Query: 250 PDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
K+++SGS D ++IWN + V L H V + +P N++ASA
Sbjct: 250 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIASA 300
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 25/216 (11%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG 160
GHTK V+S+ SP + + S DK +++W + + H G +A
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 161 LIFGVGVNSDTIKLYDVRSFD-----KGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215
L+ + T+K++DV S KG SN+ F F+ I+ +
Sbjct: 82 LLVSAS-DDKTLKIWDVSSGKCLKTLKG-HSNYVFCCN---------FNPQSNLIVSGSF 130
Query: 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHIWNAEKGFK 274
+R +D G+CL+TL + P+ A F D ++S S DG IW+ G
Sbjct: 131 DESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 275 VCVLDADHPSPVQTIQFNP--KFNMMASACTNLAFW 308
+ L D PV ++F+P K+ + A+ L W
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY-GV 66
+++ K K ++D ++++ ++ DG L++S S D I+D G +T+ V
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL----SPIDDTF 122
++F+ + + A+ +D+T++ K ++ + GH K C+ S +
Sbjct: 199 SFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGH--KNEKYCIFANFSVTGGKW 254
Query: 123 I-SGSYDKTVRLWDLRSPN----CQGIMHVSGSRPIAAFDPEGLIFGVGVNSD-TIKLY 175
I SGS D V +W+L++ QG H A E +I + +D TIKL+
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQG--HTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 141/305 (46%), Gaps = 26/305 (8%)
Query: 7 VIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV 66
V +Y + +T ++S+ +S +G L S S D I I+ G ++T+ K G+
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGS 126
+ ++ + AS D T++ + K ++ GH+ V +P + +SGS
Sbjct: 72 SDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 127 YDKTVRLWDLRSPNCQGIMHVSGSRPIAA--FDPEGLIFGVGVNSDTIKLYDVRSF---- 180
+D++VR+WD+++ C + S P++A F+ +G + +++D S
Sbjct: 130 FDESVRIWDVKTGMCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 181 ----DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236
D P +F +KFS +GKYIL +T + ++ +D G+CL+T G
Sbjct: 189 TLIDDDNPPVSF------------VKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGH 236
Query: 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296
N K C K+++SGS D ++IWN + V L H V + +P N
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG-HTDVVISTACHPTEN 295
Query: 297 MMASA 301
++ASA
Sbjct: 296 IIASA 300
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 25/216 (11%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG 160
GHTK V+S+ SP + S S DK +++W + + H G +A
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 161 LIFGVGVNSDTIKLYDVRSFD-----KGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215
L+ + T+K++DV S KG SN+ F F+ I+ +
Sbjct: 82 LLVSAS-DDKTLKIWDVSSGKCLKTLKG-HSNYVFCCN---------FNPQSNLIVSGSF 130
Query: 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHIWNAEKGFK 274
+R +D G CL+TL + P+ A F D ++S S DG IW+ G
Sbjct: 131 DESVRIWDVKTGMCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 275 VCVLDADHPSPVQTIQFNP--KFNMMASACTNLAFW 308
+ L D PV ++F+P K+ + A+ +L W
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW 222
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 80/179 (44%), Gaps = 17/179 (9%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-SKKYGV 66
+++ K ++D ++++ ++ DG L++S S D I+D G +T+ V
Sbjct: 139 VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL----SPIDDTF 122
++F+ + + A+ +D+ ++ K ++ + GH K C+ S +
Sbjct: 199 SFVKFSPNGKYILAAT--LDNDLKLWDYSKGKCLKTYTGH--KNEKYCIFANFSVTGGKW 254
Query: 123 I-SGSYDKTVRLWDLRSPN----CQGIMHVSGSRPIAAFDPEGLIFGVGVNSD-TIKLY 175
I SGS D V +W+L++ QG H A E +I + +D TIKL+
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQG--HTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 131/295 (44%), Gaps = 18/295 (6%)
Query: 9 RSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDL 68
R+ ++ + ++ + + +S DG + S S+D + +++ G +T+ V
Sbjct: 168 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRG 226
Query: 69 IRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD 128
+ F+ Q AS DD L + + ++ GH+ VN + P T S S D
Sbjct: 227 VAFSPDGQTIASAS---DDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDD 283
Query: 129 KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNF 188
KTV+LW+ Q + S S AF P+G + T+KL+ ++
Sbjct: 284 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW-----NRNGQHLQ 338
Query: 189 KFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN-KGCPLEAS 247
W G+ FS DG+ I +++ ++ ++ NGQ LQTL G ++ +G +
Sbjct: 339 TLTGHSSSVW-GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGV----A 392
Query: 248 FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302
F+PD + + S S D + +WN G + L H S V + F+P +ASA
Sbjct: 393 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG-HSSSVWGVAFSPDDQTIASAS 445
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 125/287 (43%), Gaps = 18/287 (6%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
++ + + +S DG + S S+D + +++ G +T+ V + F+ Q
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
AS DD L + + ++ GH+ V + SP T S S DKTV+LW+
Sbjct: 71 TIASAS---DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 127
Query: 137 RSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC 196
Q + S S AF P+G + T+KL++ G
Sbjct: 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQ-TLTGHSSS 182
Query: 197 DWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN-KGCPLEASFTPDSKYV 255
W G+ FS DG+ I +++ ++ ++ NGQ LQTL G ++ +G +F+PD + +
Sbjct: 183 VW-GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGV----AFSPDGQTI 236
Query: 256 ISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302
S S D + +WN G + L H S V + F P +ASA
Sbjct: 237 ASASDDKTVKLWN-RNGQLLQTLTG-HSSSVNGVAFRPDGQTIASAS 281
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 127/294 (43%), Gaps = 16/294 (5%)
Query: 9 RSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDL 68
R+ ++ + ++ + + +S DG + S S+D + +++ G +T+ V
Sbjct: 86 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWG 144
Query: 69 IRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD 128
+ F+ Q AS DD L + + ++ GH+ V + SP T S S D
Sbjct: 145 VAFSPDGQTIASAS---DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 201
Query: 129 KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNF 188
KTV+LW+ Q + S S AF P+G + T+KL++ G
Sbjct: 202 KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN----RNGQL--L 255
Query: 189 KFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF 248
+ G+ F DG+ I +++ ++ ++ NGQ LQTL G + +F
Sbjct: 256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTG---HSSSVWGVAF 311
Query: 249 TPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302
+PD + + S S D + +WN G + L H S V + F+P +ASA
Sbjct: 312 SPDGQTIASASDDKTVKLWN-RNGQHLQTLTG-HSSSVWGVAFSPDGQTIASAS 363
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 128/294 (43%), Gaps = 16/294 (5%)
Query: 9 RSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDL 68
R+ ++ + ++ + + +S DG + S S+D + +++ G +T+ V
Sbjct: 45 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRG 103
Query: 69 IRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD 128
+ F+ Q AS DD L + + ++ GH+ V + SP T S S D
Sbjct: 104 VAFSPDGQTIASAS---DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 160
Query: 129 KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNF 188
KTV+LW+ Q + S S AF P+G + T+KL++ +
Sbjct: 161 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 220
Query: 189 KFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF 248
+ G+ FS DG+ I +++ ++ ++ NGQ LQTL G ++ +F
Sbjct: 221 SSSVR------GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNG---VAF 270
Query: 249 TPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302
PD + + S S D + +WN G + L H S V + F+P +ASA
Sbjct: 271 RPDGQTIASASDDKTVKLWN-RNGQLLQTLTG-HSSSVWGVAFSPDGQTIASAS 322
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 115/267 (43%), Gaps = 24/267 (8%)
Query: 12 KVAKLFREN----------TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS 61
K KL+ N + + + +S DG + S S+D + +++ G +T+
Sbjct: 325 KTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTG 383
Query: 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT 121
V + F+ Q AS DD L + + ++ GH+ V + SP D T
Sbjct: 384 HSSSVRGVAFSPDGQTIASAS---DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQT 440
Query: 122 FISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD 181
S S DKTV+LW+ Q + S S AF P+G + T+KL++
Sbjct: 441 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 500
Query: 182 KGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKG 241
+ + G+ FS DG+ I +++ ++ ++ NGQ LQTL G +
Sbjct: 501 LQTLTGHSSSVR------GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG---HSS 550
Query: 242 CPLEASFTPDSKYVISGSTDGRIHIWN 268
+F+PD + + S S+D + +WN
Sbjct: 551 SVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 4/127 (3%)
Query: 9 RSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDL 68
R+ ++ + ++ + + +S DG + S S+D + +++ G +T+ V
Sbjct: 455 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRG 513
Query: 69 IRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD 128
+ F+ Q AS DD L + + ++ GH+ V + SP T S S D
Sbjct: 514 VAFSPDGQTIASAS---DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSD 570
Query: 129 KTVRLWD 135
KTV+LW+
Sbjct: 571 KTVKLWN 577
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 121/276 (43%), Gaps = 26/276 (9%)
Query: 35 LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94
+++S SED I ++D E G +RT+ V I F H+ + AS D T++
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS--GKLLASCSADMTIKLWDF 179
Query: 95 HDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA 154
+ IR GH V+S+ + P D +S S DKT+++W++++ C + +G R
Sbjct: 180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC--VKTFTGHREWV 237
Query: 155 AF---DPEGLIFGVGVNSDTIKLYDVRSFD-KGPFSNFKFAAE-----KECDWTGI---- 201
+ +G + N T++++ V + + K + E E ++ I
Sbjct: 238 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 297
Query: 202 -----KFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI 256
K G ++L + I+ +D G CL TL G N L F K+++
Sbjct: 298 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL---FHSGGKFIL 354
Query: 257 SGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFN 292
S + D + +W+ + + L+A H V ++ F+
Sbjct: 355 SCADDKTLRVWDYKNKRCMKTLNA-HEHFVTSLDFH 389
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 111/278 (39%), Gaps = 37/278 (13%)
Query: 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHA 74
+ + +TD + I + G LL SCS D I ++D + RT+ + V +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 203
Query: 75 KQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRL 133
+ AS D T++ + ++ F GH + V + D T I S S D+TVR+
Sbjct: 204 GDHIVSASR--DKTIKMWEVQTGYCVKTFTGHREWVR-MVRPNQDGTLIASCSNDQTVRV 260
Query: 134 WDLRSPNCQG----------------------IMHVSGSRPIAAFDPEGLIFGVGVNSDT 171
W + + C+ I +GS + P G G T
Sbjct: 261 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP-GPFLLSGSRDKT 319
Query: 172 IKLYDVRSFDKGPFSNFKFAAEKECDWT-GIKFSADGKYILISTNGSIIRTFDAYNGQCL 230
IK++DV + +W G+ F + GK+IL + +R +D N +C+
Sbjct: 320 IKMWDVST------GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 373
Query: 231 QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
+TL ++ F + YV++GS D + +W
Sbjct: 374 KTLNA---HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 80/195 (41%), Gaps = 14/195 (7%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG 160
GH V + P+ +S S D T+++WD + + + + H + I +FD G
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI-SFDHSG 162
Query: 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIR 220
+ TIKL+D + F+ + + + + + +G +I+ ++ I+
Sbjct: 163 KLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217
Query: 221 TFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD- 279
++ G C++T G ++ D + S S D + +W K C +
Sbjct: 218 MWEVQTGYCVKTFTG---HREWVRMVRPNQDGTLIASCSNDQTVRVWVV--ATKECKAEL 272
Query: 280 ADHPSPVQTIQFNPK 294
+H V+ I + P+
Sbjct: 273 REHRHVVECISWAPE 287
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 92/255 (36%), Gaps = 34/255 (13%)
Query: 78 AIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLR 137
++ S D T++ + R GHT V + S S D T++LWD +
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 138 SPNCQGIMHVSGSR-PIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC 196
C MH + P G TIK+++V++ + F +E
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT----GYCVKTFTGHRE- 235
Query: 197 DWTG-IKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKY- 254
W ++ + DG I +N +R + +C L + C S+ P+S Y
Sbjct: 236 -WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC---ISWAPESSYS 291
Query: 255 -------------------VISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP-- 293
++SGS D I +W+ G + L H + V+ + F+
Sbjct: 292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-VGHDNWVRGVLFHSGG 350
Query: 294 KFNMMASACTNLAFW 308
KF + + L W
Sbjct: 351 KFILSCADDKTLRVW 365
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Query: 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92
G L+S S D I ++D G T+ V + F + + S D T+R
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL--SCADDKTLRVW 365
Query: 93 SLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLR 137
+ + ++ H V SL ++GS D+TV++W+ R
Sbjct: 366 DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 119/282 (42%), Gaps = 29/282 (10%)
Query: 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92
G ++S S+D+ + ++ G RT+ GV ++ + I S D T++
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVW 184
Query: 93 SLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGS 150
+ + I GHT V C+ + +SGS D T+R+WD+ + C ++ HV+
Sbjct: 185 NAETGECIHTLYGHTSTVR--CMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV 242
Query: 151 RPIAAFDPEGLIFGVGVNSDTIKLYD--VRSFDKGPFSNFKFAAEKECDWTGIKFSADGK 208
R + +D ++ G YD V+ +D + ++F DG
Sbjct: 243 RCVQ-YDGRRVVSGA---------YDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI 290
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
+++ + + IR +D G C+ TL G + L + ++SG+ D + IW+
Sbjct: 291 HVVSGSLDTSIRVWDVETGNCIHTLTGHQS-----LTSGMELKDNILVSGNADSTVKIWD 345
Query: 269 AEKGFKVCVLDA--DHPSPVQTIQFNPKFNMMASACTNLAFW 308
+ G + L H S V +QFN F + +S + W
Sbjct: 346 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 106/239 (44%), Gaps = 18/239 (7%)
Query: 35 LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94
++IS S D + +++ E G T++ +R H + + + ++ D T+R +
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGH---TSTVRCMHLHEKRVVSGSR-DATLRVWDI 226
Query: 95 HDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA 154
+ + GH V C+ +SG+YD V++WD + C + +R +
Sbjct: 227 ETGQCLHVLMGHVAAVR--CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR-VY 283
Query: 155 AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST 214
+ +G+ G +I+++DV + + + +G++ + IL+S
Sbjct: 284 SLQFDGIHVVSGSLDTSIRVWDVETGN-----CIHTLTGHQSLTSGMELKDN---ILVSG 335
Query: 215 NG-SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
N S ++ +D GQCLQTL G NK + +VI+ S DG + +W+ + G
Sbjct: 336 NADSTVKIWDIKTGQCLQTLQG--PNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG 392
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 14/153 (9%)
Query: 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHA-STKIDDTVR 90
DG ++S + D + ++D E T T+ V ++F IH S +D ++R
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD-----GIHVVSGSLDTSIR 302
Query: 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC----QGIMH 146
+ I GH + + L D+ +SG+ D TV++WD+++ C QG
Sbjct: 303 VWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNK 360
Query: 147 VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS 179
+ F+ +I + T+KL+D+++
Sbjct: 361 HQSAVTCLQFNKNFVI--TSSDDGTVKLWDLKT 391
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 106/245 (43%), Gaps = 31/245 (12%)
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
A+ D +R + + K + GH + + SL P D +SGS D+TVR+WDLR+
Sbjct: 139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 198
Query: 141 CQGIMHVSGSRPIAAFDP-EGLIFGVGVNSDTIKLYDVRS---FDKGPFSNFKFAAEKEC 196
C + + A P +G G ++++D + ++ N K+
Sbjct: 199 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 258
Query: 197 DWTGIKFSADGKYILISTNGSIIRTFDAYN---------------GQCLQTLAGFLNNKG 241
++ + F+ DG+ ++ +GS+ R+ +N G C T ++ +K
Sbjct: 259 VYS-VVFTRDGQSVV---SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT---YIGHKD 311
Query: 242 CPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFN-----PKFN 296
L + T + +Y++SGS D + W+ + G + +L S + N P++N
Sbjct: 312 FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 371
Query: 297 MMASA 301
+ A+
Sbjct: 372 VFATG 376
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVD 67
I + K+ + + + I S+DY G L+S S D + I+D G T S + GV
Sbjct: 152 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT-LSIEDGVT 210
Query: 68 LIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYF-------PGHTKKVNSLCLSPIDD 120
+ + I A + +D VR + GH V S+ +
Sbjct: 211 TVAVSPGDGKYIAAGS-LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ 269
Query: 121 TFISGSYDKTVRLWDLRSPN 140
+ +SGS D++V+LW+L++ N
Sbjct: 270 SVVSGSLDRSVKLWNLQNAN 289
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 17/116 (14%)
Query: 201 IKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG---------FLNNKGCP------LE 245
+KFS DG+Y+ N + + + +G + L+ LN P
Sbjct: 70 VKFSNDGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRS 128
Query: 246 ASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
F+PD K++ +G+ D I IW+ E V +L H + ++ + P + + S
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSG 183
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 24/154 (15%)
Query: 11 YKVAKLFRENT------DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY 64
+ V +L EN D + S+ ++ DG ++S S D + +++ + NK +
Sbjct: 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299
Query: 65 GVDLIRFTHAKQAAIHASTKIDDT----------VRYLSLHDNKYIRYFPGHTKKV---- 110
G + + K + +T +D V + + GH V
Sbjct: 300 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 359
Query: 111 --NSLCLSPIDDTFISGSYDKTVRLWDLR--SPN 140
N L P + F +GS D R+W + +PN
Sbjct: 360 VANGSSLGPEYNVFATGSGDCKARIWKYKKIAPN 393
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 123/304 (40%), Gaps = 56/304 (18%)
Query: 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNK--------RTVFSKK 63
+ + R + KI ++ + D LL+S S+D +++I+D TNK V +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD-SYTTNKVHAIPLRSSWVMTCA 104
Query: 64 Y----------GVDLIRFTH---AKQAAIHASTKIDDTVRYLS----LHDNKYI------ 100
Y G+D I + ++ + S ++ YLS L DN+ +
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164
Query: 101 -------------RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-- 145
F GHT V SL L+P F+SG+ D + +LWD+R C+
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 146 HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDK-GPFSNFKFAAEKECDWTGIKFS 204
H S I F P G F G + T +L+D+R+ + +S+ C T + FS
Sbjct: 225 HESDINAICFF-PNGNAFATGSDDATCRLFDLRADQELMTYSHDNII----CGITSVSFS 279
Query: 205 ADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRI 264
G+ +L + +DA LAG N C T D V +GS D +
Sbjct: 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC---LGVTDDGMAVATGSWDSFL 336
Query: 265 HIWN 268
IWN
Sbjct: 337 KIWN 340
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 15/206 (7%)
Query: 101 RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN-CQGIMHVSGSRPIAAFDPE 159
R GH K+ ++ +S S D + +WD + N I S A+ P
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 160 GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTG----IKFSADGKYILISTN 215
G G + +Y++++ + + + A TG +F D + +++++
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGH-----TGYLSCCRFLDDNQ--IVTSS 161
Query: 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKV 275
G T ++ + Q F + G + S PD++ +SG+ D +W+ +G
Sbjct: 162 GDT--TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 276 CVLDADHPSPVQTIQFNPKFNMMASA 301
H S + I F P N A+
Sbjct: 220 QTFTG-HESDINAICFFPNGNAFATG 244
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 123/304 (40%), Gaps = 56/304 (18%)
Query: 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNK--------RTVFSKK 63
+ + R + KI ++ + D LL+S S+D +++I+D TNK V +
Sbjct: 57 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD-SYTTNKVHAIPLRSSWVMTCA 115
Query: 64 Y----------GVDLIRFTH---AKQAAIHASTKIDDTVRYLS----LHDNKYI------ 100
Y G+D I + ++ + S ++ YLS L DN+ +
Sbjct: 116 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 175
Query: 101 -------------RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-- 145
F GHT V SL L+P F+SG+ D + +LWD+R C+
Sbjct: 176 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 235
Query: 146 HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDK-GPFSNFKFAAEKECDWTGIKFS 204
H S I F P G F G + T +L+D+R+ + +S+ C T + FS
Sbjct: 236 HESDINAICFF-PNGNAFATGSDDATCRLFDLRADQELMTYSHDNII----CGITSVSFS 290
Query: 205 ADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRI 264
G+ +L + +DA LAG N C T D V +GS D +
Sbjct: 291 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC---LGVTDDGMAVATGSWDSFL 347
Query: 265 HIWN 268
IWN
Sbjct: 348 KIWN 351
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 15/206 (7%)
Query: 101 RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN-CQGIMHVSGSRPIAAFDPE 159
R GH K+ ++ +S S D + +WD + N I S A+ P
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 160 GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTG----IKFSADGKYILISTN 215
G G + +Y++++ + + + A TG +F D + +++++
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGH-----TGYLSCCRFLDDNQ--IVTSS 172
Query: 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKV 275
G T ++ + Q F + G + S PD++ +SG+ D +W+ +G
Sbjct: 173 GDT--TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 230
Query: 276 CVLDADHPSPVQTIQFNPKFNMMASA 301
H S + I F P N A+
Sbjct: 231 QTFTG-HESDINAICFFPNGNAFATG 255
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 123/304 (40%), Gaps = 56/304 (18%)
Query: 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNK--------RTVFSKK 63
+ + R + KI ++ + D LL+S S+D +++I+D TNK V +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD-SYTTNKVHAIPLRSSWVMTCA 104
Query: 64 Y----------GVDLIRFTH---AKQAAIHASTKIDDTVRYLS----LHDNKYI------ 100
Y G+D I + ++ + S ++ YLS L DN+ +
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164
Query: 101 -------------RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-- 145
F GHT V SL L+P F+SG+ D + +LWD+R C+
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 146 HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDK-GPFSNFKFAAEKECDWTGIKFS 204
H S I F P G F G + T +L+D+R+ + +S+ C T + FS
Sbjct: 225 HESDINAICFF-PNGNAFATGSDDATCRLFDLRADQELMTYSHDNII----CGITSVSFS 279
Query: 205 ADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRI 264
G+ +L + +DA LAG N C T D V +GS D +
Sbjct: 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC---LGVTDDGMAVATGSWDSFL 336
Query: 265 HIWN 268
IWN
Sbjct: 337 KIWN 340
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 15/206 (7%)
Query: 101 RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN-CQGIMHVSGSRPIAAFDPE 159
R GH K+ ++ +S S D + +WD + N I S A+ P
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 160 GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTG----IKFSADGKYILISTN 215
G G + +Y++++ + + + A TG +F D + +++++
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGH-----TGYLSCCRFLDDNQ--IVTSS 161
Query: 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKV 275
G T ++ + Q F + G + S PD++ +SG+ D +W+ +G
Sbjct: 162 GDT--TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 276 CVLDADHPSPVQTIQFNPKFNMMASA 301
H S + I F P N A+
Sbjct: 220 QTFTG-HESDINAICFFPNGNAFATG 244
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 123/304 (40%), Gaps = 56/304 (18%)
Query: 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNK--------RTVFSKK 63
+ + R + KI ++ + D LL+S S+D +++I+D TNK V +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD-SYTTNKVHAIPLRSSWVMTCA 104
Query: 64 Y----------GVDLIRFTH---AKQAAIHASTKIDDTVRYLS----LHDNKYI------ 100
Y G+D I + ++ + S ++ YLS L DN+ +
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164
Query: 101 -------------RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-- 145
F GHT V SL L+P F+SG+ D + +LWD+R C+
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 146 HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDK-GPFSNFKFAAEKECDWTGIKFS 204
H S I F P G F G + T +L+D+R+ + +S+ C T + FS
Sbjct: 225 HESDINAICFF-PNGNAFATGSDDATCRLFDLRADQELMTYSHDNII----CGITSVSFS 279
Query: 205 ADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRI 264
G+ +L + +DA LAG N C T D V +GS D +
Sbjct: 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC---LGVTDDGMAVATGSWDSFL 336
Query: 265 HIWN 268
IWN
Sbjct: 337 KIWN 340
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 15/206 (7%)
Query: 101 RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN-CQGIMHVSGSRPIAAFDPE 159
R GH K+ ++ +S S D + +WD + N I S A+ P
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 160 GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTG----IKFSADGKYILISTN 215
G G + +Y++++ + + + A TG +F D + +++++
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGH-----TGYLSCCRFLDDNQ--IVTSS 161
Query: 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKV 275
G T ++ + Q F + G + S PD++ +SG+ D +W+ +G
Sbjct: 162 GDT--TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 276 CVLDADHPSPVQTIQFNPKFNMMASA 301
H S + I F P N A+
Sbjct: 220 QTFTG-HESDINAICFFPNGNAFATG 244
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 123/304 (40%), Gaps = 56/304 (18%)
Query: 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNK--------RTVFSKK 63
+ + R + KI ++ + D LL+S S+D +++I+D TNK V +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD-SYTTNKVHAIPLRSSWVMTCA 104
Query: 64 Y----------GVDLIRFTH---AKQAAIHASTKIDDTVRYLS----LHDNKYI------ 100
Y G+D I + ++ + S ++ YLS L DN+ +
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164
Query: 101 -------------RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-- 145
F GHT V SL L+P F+SG+ D + +LWD+R C+
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 146 HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDK-GPFSNFKFAAEKECDWTGIKFS 204
H S I F P G F G + T +L+D+R+ + +S+ C T + FS
Sbjct: 225 HESDINAICFF-PNGNAFATGSDDATCRLFDLRADQELMTYSHDNII----CGITSVSFS 279
Query: 205 ADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRI 264
G+ +L + +DA LAG N C T D V +GS D +
Sbjct: 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC---LGVTDDGMAVATGSWDSFL 336
Query: 265 HIWN 268
IWN
Sbjct: 337 KIWN 340
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 15/206 (7%)
Query: 101 RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN-CQGIMHVSGSRPIAAFDPE 159
R GH K+ ++ +S S D + +WD + N I S A+ P
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 160 GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTG----IKFSADGKYILISTN 215
G G + +Y++++ + + + A TG +F D + +++++
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGH-----TGYLSCCRFLDDNQ--IVTSS 161
Query: 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKV 275
G T ++ + Q F + G + S PD++ +SG+ D +W+ +G
Sbjct: 162 GDT--TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 276 CVLDADHPSPVQTIQFNPKFNMMASA 301
H S + I F P N A+
Sbjct: 220 QTFTG-HESDINAICFFPNGNAFATG 244
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 109/261 (41%), Gaps = 12/261 (4%)
Query: 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFT 72
+ K F +D++ ID+ +++ ++ +++ E R++ + V +F
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 73 HAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVR 132
K I S D +R + + + + F H + S+ + P +SGS D TV+
Sbjct: 65 ARKNWIIVGSD--DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 133 LWDLRSPNCQGIMHVSGSRPI---AAFDP-EGLIFGVGVNSDTIKLYDVRSFDKGPFSNF 188
LW+ + N G AF+P + F G T+K++ + P
Sbjct: 123 LWNWEN-NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTL 179
Query: 189 KFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF 248
E+ ++ D Y++ +++ I+ +D C+ TL G ++N A F
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF---AVF 236
Query: 249 TPDSKYVISGSTDGRIHIWNA 269
P +ISGS DG + IWN+
Sbjct: 237 HPTLPIIISGSEDGTLKIWNS 257
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 202 KFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD 261
KF A +I++ ++ IR F+ G+ + F + + P YV+SGS D
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGE---KVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Query: 262 GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPK-FNMMASAC 302
+ +WN E + + H V + FNPK + AS C
Sbjct: 119 LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/90 (18%), Positives = 35/90 (38%)
Query: 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT 121
++ GV+ + + + D T++ + GH V+ P
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 122 FISGSYDKTVRLWDLRSPNCQGIMHVSGSR 151
ISGS D T+++W+ + + ++V R
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 109/261 (41%), Gaps = 12/261 (4%)
Query: 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFT 72
+ K F +D++ ID+ +++ ++ +++ E R++ + V +F
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 73 HAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVR 132
K I S D +R + + + + F H + S+ + P +SGS D TV+
Sbjct: 65 ARKNWIIVGSD--DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 133 LWDLRSPNCQGIMHVSGSRPI---AAFDP-EGLIFGVGVNSDTIKLYDVRSFDKGPFSNF 188
LW+ + N G AF+P + F G T+K++ + P
Sbjct: 123 LWNWEN-NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTL 179
Query: 189 KFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF 248
E+ ++ D Y++ +++ I+ +D C+ TL G ++N A F
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF---AVF 236
Query: 249 TPDSKYVISGSTDGRIHIWNA 269
P +ISGS DG + IWN+
Sbjct: 237 HPTLPIIISGSEDGTLKIWNS 257
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 202 KFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD 261
KF A +I++ ++ IR F+ G+ + F + + P YV+SGS D
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGE---KVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Query: 262 GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPK-FNMMASAC 302
+ +WN E + + H V + FNPK + AS C
Sbjct: 119 LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/90 (18%), Positives = 35/90 (38%)
Query: 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT 121
++ GV+ + + + D T++ + GH V+ P
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 122 FISGSYDKTVRLWDLRSPNCQGIMHVSGSR 151
ISGS D T+++W+ + + ++V R
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 107/262 (40%), Gaps = 14/262 (5%)
Query: 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFT 72
+ K F +D++ ID+ +++ ++ I++ E R++ + V +F
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 73 HAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVR 132
K I S D +R + + + + F H + S+ + P +SGS D TV+
Sbjct: 65 ARKNWIIVGSD--DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 133 LWDLRS-----PNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSN 187
LW+ + +G H DP F G T+K++ + P
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPS--TFASGCLDRTVKVWSLGQ--STPNFT 178
Query: 188 FKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247
E+ ++ D Y++ +++ I+ +D C+ TL G ++N A
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF---AV 235
Query: 248 FTPDSKYVISGSTDGRIHIWNA 269
F P +ISGS DG + IWN+
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNS 257
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 202 KFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD 261
KF A +I++ ++ IR F+ G+ + F + + P YV+SGS D
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGE---KVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Query: 262 GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPK-FNMMASAC 302
+ +WN E + + H V + FNPK + AS C
Sbjct: 119 LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 27/66 (40%)
Query: 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM 145
D T++ + GH V+ P ISGS D T+++W+ + + +
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Query: 146 HVSGSR 151
+V R
Sbjct: 267 NVGLER 272
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 107/262 (40%), Gaps = 14/262 (5%)
Query: 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFT 72
+ K F +D++ ID+ +++ ++ +++ E R++ + V +F
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 73 HAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVR 132
K I S D +R + + + + F H + S+ + P +SGS D TV+
Sbjct: 65 ARKNWIIVGSD--DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 133 LWDLRS-----PNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSN 187
LW+ + +G H DP F G T+K++ + P
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPS--TFASGCLDRTVKVWSLGQ--STPNFT 178
Query: 188 FKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247
E+ ++ D Y++ +++ I+ +D C+ TL G ++N A
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF---AV 235
Query: 248 FTPDSKYVISGSTDGRIHIWNA 269
F P +ISGS DG + IWN+
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNS 257
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 202 KFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD 261
KF A +I++ ++ IR F+ G+ + F + + P YV+SGS D
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGE---KVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Query: 262 GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPK-FNMMASAC 302
+ +WN E + + H V + FNPK + AS C
Sbjct: 119 LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/90 (18%), Positives = 35/90 (38%)
Query: 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT 121
++ GV+ + + + D T++ + GH V+ P
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 122 FISGSYDKTVRLWDLRSPNCQGIMHVSGSR 151
ISGS D T+++W+ + + ++V R
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 92/220 (41%), Gaps = 28/220 (12%)
Query: 85 IDDTVRYLSLHDNKY-IRY-FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ 142
+DD V+ D + +++ GH V S+ +S S S D +RLWDL N +
Sbjct: 56 LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE--NGK 113
Query: 143 GIMHVSGSRPIA---AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWT 199
I + A AF P+ G + + ++ V S K E D
Sbjct: 114 QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK----------EYSLDTR 163
Query: 200 G-----IKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSK 253
G I +S DGKY+ II FD G+ L TL G P+ + +F+PDS+
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG----HAMPIRSLTFSPDSQ 219
Query: 254 YVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
+++ S DG I I++ + L H S V + F P
Sbjct: 220 LLVTASDDGYIKIYDVQHANLAGTLSG-HASWVLNVAFCP 258
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 95/220 (43%), Gaps = 37/220 (16%)
Query: 95 HDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSR-PI 153
HD+ G KK NS +T ++GS D V++W R + G + +
Sbjct: 31 HDDAIWSVAWGTNKKENS-------ETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGV 83
Query: 154 AAFD-PEGLIFGVGVNSDT-IKLYD------VRSFDKGPFSNFKFAAEKECDWTGIKFSA 205
+ D L + D I+L+D ++S D GP + A FS
Sbjct: 84 VSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLA-----------FSP 132
Query: 206 DGKYILISTNGSIIRTFDAYNGQ---CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG 262
D +Y+ T+ + F +G+ L T F+ L +++PD KY+ SG+ DG
Sbjct: 133 DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFI------LSIAYSPDGKYLASGAIDG 186
Query: 263 RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302
I+I++ G + L+ H P++++ F+P ++ +A
Sbjct: 187 IINIFDIATGKLLHTLEG-HAMPIRSLTFSPDSQLLVTAS 225
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 89/216 (41%), Gaps = 18/216 (8%)
Query: 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS-----KKYGVD-----L 68
EN +I SID ++ S D Q + +G K +F K+Y +D +
Sbjct: 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVG--KVNIFGVESGKKEYSLDTRGKFI 167
Query: 69 IRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD 128
+ ++ AS ID + + K + GH + SL SP ++ S D
Sbjct: 168 LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDD 227
Query: 129 KTVRLWDLRSPNCQGIMHVSGSRPI-AAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSN 187
++++D++ N G + S + AF P+ F + ++K++DV +
Sbjct: 228 GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT----RTCV 283
Query: 188 FKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFD 223
F ++ W G+K++ +G I+ + I +D
Sbjct: 284 HTFFDHQDQVW-GVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 95/227 (41%), Gaps = 18/227 (7%)
Query: 79 IHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS 138
I AS+ +D +R L + K I+ +L SP +G++ V ++ + S
Sbjct: 94 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 153
Query: 139 PNCQGIMHVSGSRPIA-AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECD 197
+ + G ++ A+ P+G G I ++D+ + K E
Sbjct: 154 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI--------ATGKLLHTLEGH 205
Query: 198 WTGIK---FSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKY 254
I+ FS D + ++ +++ I+ +D + TL+G + L +F PD +
Sbjct: 206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG---HASWVLNVAFCPDDTH 262
Query: 255 VISGSTDGRIHIWNAEKGFKVCVLD-ADHPSPVQTIQFNPKFNMMAS 300
+S S+D + +W+ G + CV DH V +++N + + S
Sbjct: 263 FVSSSSDKSVKVWDV--GTRTCVHTFFDHQDQVWGVKYNGNGSKIVS 307
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 120/311 (38%), Gaps = 67/311 (21%)
Query: 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYD---------------------- 49
K + + + +K+ +D+ D ++S S+D +++++D
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 114
Query: 50 --------CELGTNKRTVF-----------SKKYGVDL-------IRFTHAKQAAIHAST 83
C NK +V+ +KK V + FT++ + AS
Sbjct: 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG 174
Query: 84 KIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID--DTFISGSYDKTVRLWDLRSPNC 141
D T + + ++ F GH V L L+P + +TF+SG DK +WD+RS C
Sbjct: 175 --DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC 232
Query: 142 QGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPF---SNFKFAAEKEC 196
H S + + P G F G + T +LYD+R+ + + F A
Sbjct: 233 VQAFETHESDVNSVRYY-PSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA---- 287
Query: 197 DWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI 256
+ + FS G+ + N I +D G + L G N+ L S PD
Sbjct: 288 --SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH-ENRVSTLRVS--PDGTAFC 342
Query: 257 SGSTDGRIHIW 267
SGS D + +W
Sbjct: 343 SGSWDHTLRVW 353
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKK---Y 64
+RS + + F + + S+ Y G S S+D +YD + ++SK+ +
Sbjct: 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR-ADREVAIYSKESIIF 285
Query: 65 GVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFIS 124
G + F+ + + D T+ + + GH +V++L +SP F S
Sbjct: 286 GASSVDFSLSGRLLFAGYN--DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCS 343
Query: 125 GSYDKTVRLW 134
GS+D T+R+W
Sbjct: 344 GSWDHTLRVW 353
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 119/294 (40%), Gaps = 27/294 (9%)
Query: 16 LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAK 75
+ R +TD + +S DG + SC D + ++ E G ++ + K + +++ +
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG--EKLLDIKAHEDEVLCCAFSS 674
Query: 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI--SGSYDKTVRL 133
+ A+ D V+ K + + H+++VN + + + +GS D ++L
Sbjct: 675 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 734
Query: 134 WDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFK--- 189
WDL C+ M + S F P+ + T++L+DVRS ++ N K
Sbjct: 735 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Query: 190 FAAE----------KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN 239
++E K C W SADG I+++ ++ FD + L + +
Sbjct: 795 LSSEDPPEDVEVIVKCCSW-----SADGDKIIVAAKNKVL-LFDIHTSGLLAEI--HTGH 846
Query: 240 KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
F+P + + + +WN + KV H S V + F+P
Sbjct: 847 HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG-HLSWVHGVMFSP 899
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 110/249 (44%), Gaps = 16/249 (6%)
Query: 24 ITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST 83
+ I ++ADG LIS SED I +++ + G VF + + + F + + + S
Sbjct: 1013 VRHIQFTADGKTLISSSEDSVIQVWNWQTGD---YVFLQAHQETVKDFRLLQDSRL-LSW 1068
Query: 84 KIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLW--DLRSPNC 141
D TV+ ++ + R F H V S +S F S S DKT ++W DL SP
Sbjct: 1069 SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH 1128
Query: 142 QGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS----FDKGPFSNFKFAAEKECD 197
+ H +G +AF +G++ G ++ I++++V P S + A
Sbjct: 1129 ELKGH-NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW 1187
Query: 198 WTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS 257
T + FS D K ++ + G ++ ++ G QT F N + +PD + ++
Sbjct: 1188 VTDVCFSPDSKTLV--SAGGYLKWWNVATGDSSQT---FYTNGTNLKKIHVSPDFRTYVT 1242
Query: 258 GSTDGRIHI 266
G ++I
Sbjct: 1243 VDNLGILYI 1251
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 12/168 (7%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG 164
GH V+ + SP +F++ S D+T+R+W+ + + + + + E ++
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 946
Query: 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDA 224
V D I+ + + G A C S +Y+ I+ +
Sbjct: 947 V----DNIRGLQLIAGKTGQIDYLPEAQVSCC-----CLSPHLEYVAFGDEDGAIKIIEL 997
Query: 225 YNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
N + + G +K FT D K +IS S D I +WN + G
Sbjct: 998 PNNRVFSSGVG---HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1042
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 83/391 (21%), Positives = 140/391 (35%), Gaps = 86/391 (21%)
Query: 6 NVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG 65
N+ KVA R + + + +S DG ++ S+D I +++ + K + K
Sbjct: 875 NIDSRLKVADC-RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK-KVCKNSAIVLKQE 932
Query: 66 VDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK--YIRYFPGHTKKVNSLCLSPIDDTFI 123
+D++ F + + D +R L L K I Y P +V+ CLSP +
Sbjct: 933 IDVV-FQENETMVLAV-----DNIRGLQLIAGKTGQIDYLP--EAQVSCCCLSPHLEYVA 984
Query: 124 SGSYDKTVRLWDLRSPN----CQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS 179
G D +++ +L PN G+ H R I F +G I++++ ++
Sbjct: 985 FGDEDGAIKIIEL--PNNRVFSSGVGHKKAVRHIQ-FTADGKTLISSSEDSVIQVWNWQT 1041
Query: 180 FD-------KGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQ 231
D + +F+ + + +S DG + + G I R F + G L
Sbjct: 1042 GDYVFLQAHQETVKDFRLLQDSRL----LSWSFDGTVKVWNVITGRIERDFTCHQGTVLS 1097
Query: 232 T----------------------------LAGFLNNKGCPLEASFTPDSKYVISGSTDGR 263
L + GC ++F+ D + +G +G
Sbjct: 1098 CAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGE 1157
Query: 264 IHIWNAEKG--------FKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFW------- 308
I IWN G V A H V + F+P + SA L +W
Sbjct: 1158 IRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATGDS 1217
Query: 309 IPTYLSN-------HQEPD-----TIDNLKI 327
T+ +N H PD T+DNL I
Sbjct: 1218 SQTFYTNGTNLKKIHVSPDFRTYVTVDNLGI 1248
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 105/254 (41%), Gaps = 70/254 (27%)
Query: 86 DDTVRYLSLHDNKYIRYF-------PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS 138
D TV L++ + YF GH V+ L LS + IS S+DKT+RLWDLR+
Sbjct: 48 DKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT 107
Query: 139 PNC--QGIMHVSGSRPIAAFDPEG-LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKE 195
+ + H S + AF P+ I G + IKL+++ + FS +AEKE
Sbjct: 108 GTTYKRFVGHQSEVYSV-AFSPDNRQILSAGAERE-IKLWNI--LGECKFS----SAEKE 159
Query: 196 --CDWTG-IKFSA--------------------DGKYILISTNGSIIRTFDAYNGQCLQT 232
DW +++S DG+ + +TN I TF A+
Sbjct: 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHL 219
Query: 233 LAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHP-------SP 285
S +P+ KY+ +G D ++ IW+ +L+ +P S
Sbjct: 220 --------------SISPNGKYIATGGKDKKLLIWD--------ILNLTYPQREFDAGST 257
Query: 286 VQTIQFNPKFNMMA 299
+ I FNPK +A
Sbjct: 258 INQIAFNPKLQWVA 271
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 119/294 (40%), Gaps = 27/294 (9%)
Query: 16 LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAK 75
+ R +TD + +S DG + SC D + ++ E G ++ + K + +++ +
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG--EKLLDIKAHEDEVLCCAFSS 667
Query: 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI--SGSYDKTVRL 133
+ A+ D V+ K + + H+++VN + + + +GS D ++L
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727
Query: 134 WDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFK--- 189
WDL C+ M + S F P+ + T++L+DVRS ++ N K
Sbjct: 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Query: 190 FAAE----------KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN 239
++E K C W SADG I+++ ++ FD + L + +
Sbjct: 788 LSSEDPPEDVEVIVKCCSW-----SADGDKIIVAAKNKVL-LFDIHTSGLLAEI--HTGH 839
Query: 240 KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
F+P + + + +WN + KV H S V + F+P
Sbjct: 840 HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG-HLSWVHGVMFSP 892
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 110/249 (44%), Gaps = 16/249 (6%)
Query: 24 ITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST 83
+ I ++ADG LIS SED I +++ + G VF + + + F + + + S
Sbjct: 1006 VRHIQFTADGKTLISSSEDSVIQVWNWQTGD---YVFLQAHQETVKDFRLLQDSRL-LSW 1061
Query: 84 KIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLW--DLRSPNC 141
D TV+ ++ + R F H V S +S F S S DKT ++W DL SP
Sbjct: 1062 SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH 1121
Query: 142 QGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS----FDKGPFSNFKFAAEKECD 197
+ H +G +AF +G++ G ++ I++++V P S + A
Sbjct: 1122 ELKGH-NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW 1180
Query: 198 WTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS 257
T + FS D K ++ + G ++ ++ G QT F N + +PD + ++
Sbjct: 1181 VTDVCFSPDSKTLV--SAGGYLKWWNVATGDSSQT---FYTNGTNLKKIHVSPDFRTYVT 1235
Query: 258 GSTDGRIHI 266
G ++I
Sbjct: 1236 VDNLGILYI 1244
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 12/168 (7%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG 164
GH V+ + SP +F++ S D+T+R+W+ + + + + + E ++
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 939
Query: 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDA 224
V D I+ + + G A C S +Y+ I+ +
Sbjct: 940 V----DNIRGLQLIAGKTGQIDYLPEAQVSCC-----CLSPHLEYVAFGDEDGAIKIIEL 990
Query: 225 YNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
N + + G +K FT D K +IS S D I +WN + G
Sbjct: 991 PNNRVFSSGVG---HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 83/391 (21%), Positives = 140/391 (35%), Gaps = 86/391 (21%)
Query: 6 NVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG 65
N+ KVA R + + + +S DG ++ S+D I +++ + K + K
Sbjct: 868 NIDSRLKVADC-RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK-KVCKNSAIVLKQE 925
Query: 66 VDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK--YIRYFPGHTKKVNSLCLSPIDDTFI 123
+D++ F + + D +R L L K I Y P +V+ CLSP +
Sbjct: 926 IDVV-FQENETMVLAV-----DNIRGLQLIAGKTGQIDYLP--EAQVSCCCLSPHLEYVA 977
Query: 124 SGSYDKTVRLWDLRSPN----CQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS 179
G D +++ +L PN G+ H R I F +G I++++ ++
Sbjct: 978 FGDEDGAIKIIEL--PNNRVFSSGVGHKKAVRHIQ-FTADGKTLISSSEDSVIQVWNWQT 1034
Query: 180 FD-------KGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQ 231
D + +F+ + + +S DG + + G I R F + G L
Sbjct: 1035 GDYVFLQAHQETVKDFRLLQDSRL----LSWSFDGTVKVWNVITGRIERDFTCHQGTVLS 1090
Query: 232 T----------------------------LAGFLNNKGCPLEASFTPDSKYVISGSTDGR 263
L + GC ++F+ D + +G +G
Sbjct: 1091 CAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGE 1150
Query: 264 IHIWNAEKG--------FKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFW------- 308
I IWN G V A H V + F+P + SA L +W
Sbjct: 1151 IRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATGDS 1210
Query: 309 IPTYLSN-------HQEPD-----TIDNLKI 327
T+ +N H PD T+DNL I
Sbjct: 1211 SQTFYTNGTNLKKIHVSPDFRTYVTVDNLGI 1241
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 14/205 (6%)
Query: 101 RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG--IMHVSGSRPIAAFDP 158
R GH+ V+ + LS + +S S+D ++RLW+L++ CQ + H + AF P
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSV-AFSP 119
Query: 159 EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-- 216
+ G + +++++V+ S C ++FS +I + G
Sbjct: 120 DNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSC----VRFSPSLDAPVIVSGGWD 175
Query: 217 SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVC 276
++++ +D G+ + L G N + +PD S DG +W+ KG +
Sbjct: 176 NLVKVWDLATGRLVTDLKGHTNYV---TSVTVSPDGSLCASSDKDGVARLWDLTKGEALS 232
Query: 277 VLDADHPSPVQTIQFNPKFNMMASA 301
+ A +P+ I F+P M +A
Sbjct: 233 EMAAG--APINQICFSPNRYWMCAA 255
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 14/214 (6%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY--GVDLIRFTHA 74
F +T + S+ +S D ++S D+ + +++ + G T+ + V +RF+ +
Sbjct: 105 FLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPS 163
Query: 75 KQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLW 134
A + S D+ V+ L + + GHT V S+ +SP S D RLW
Sbjct: 164 LDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Query: 135 DLRSPNCQGIMHVSGSRPI--AAFDPEGLIFGVGVNSDTIKLYDVRSFD----KGPFSNF 188
DL + + ++ PI F P + I+++D+ + D P
Sbjct: 224 DLT--KGEALSEMAAGAPINQICFSPN-RYWMCAATEKGIRIFDLENKDIIVELAPEHQG 280
Query: 189 KFAAEKECDWTGIKFSADGKYILISTNGSIIRTF 222
EC I +SADG + ++IR +
Sbjct: 281 SKKIVPEC--VSIAWSADGSTLYSGYTDNVIRVW 312
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 103/246 (41%), Gaps = 32/246 (13%)
Query: 49 DCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTK 108
+C G R + V + ++ A+ AS D ++R +L + + F GHTK
Sbjct: 53 ECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSAS--WDHSLRLWNLQNGQCQYKFLGHTK 110
Query: 109 KVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-------VSGSRPIAAFDPEGL 161
V S+ SP + +SG D +R+W+++ C + VS R + D +
Sbjct: 111 DVLSVAFSPDNRQIVSGGRDNALRVWNVKG-ECMHTLSRGAHTDWVSCVRFSPSLDAPVI 169
Query: 162 IFGVGVNSDTIKLYDVRS----FDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS 217
+ G N +K++D+ + D +N+ T + S DG S
Sbjct: 170 VSGGWDN--LVKVWDLATGRLVTDLKGHTNYV---------TSVTVSPDGSLCASSDKDG 218
Query: 218 IIRTFDAYNGQCLQTLAGFLNNKGCPL-EASFTPDSKYVISGSTDGRIHIWNAEKGFKVC 276
+ R +D G+ L +A G P+ + F+P+ +Y + +T+ I I++ E +
Sbjct: 219 VARLWDLTKGEALSEMAA-----GAPINQICFSPN-RYWMCAATEKGIRIFDLENKDIIV 272
Query: 277 VLDADH 282
L +H
Sbjct: 273 ELAPEH 278
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 116/294 (39%), Gaps = 27/294 (9%)
Query: 16 LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAK 75
+ R +TD + +S DG + SC D + ++ E G ++ + K + +++ +
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETG--EKLLEIKAHEDEVLCCAFST 673
Query: 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI--SGSYDKTVRL 133
A+ +D V+ + + + + H+++VN + + +GS D ++L
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKL 733
Query: 134 WDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD-------KGPF 185
WDL C+ M + S F P+ + T+KL+D S + K F
Sbjct: 734 WDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFF 793
Query: 186 SNFKFAAE------KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN 239
N + E K C W SADG I+++ I FD + L + +
Sbjct: 794 LNLEDPQEDMEVIVKCCSW-----SADGARIMVAAKNKIF-LFDIHTSGLLGEI--HTGH 845
Query: 240 KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
F+P + + + + +WN + KV H S V + F+P
Sbjct: 846 HSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRG-HLSWVHGVMFSP 898
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 115/255 (45%), Gaps = 19/255 (7%)
Query: 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAA 78
++ + I ++AD LIS S+D +I +++ +L + +F + + + F K +
Sbjct: 1007 QHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLD---KCIFLRGHQETVKDFRLLKNSR 1063
Query: 79 IHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLW--DL 136
+ S D TV+ ++ + F H V S +S F S S DKT ++W DL
Sbjct: 1064 L-LSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDL 1122
Query: 137 RSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDK----GPFSNFKFAA 192
P + H +G +AF + + G ++ I++++V + + P S + A
Sbjct: 1123 LLPLHELRGH-NGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLS--EEGA 1179
Query: 193 EKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251
W T + FS DGK +LIS G I+ ++ G+ QT F N + +PD
Sbjct: 1180 ATHGGWVTDLCFSPDGK-MLISA-GGYIKWWNVVTGESSQT---FYTNGTNLKKIHVSPD 1234
Query: 252 SKYVISGSTDGRIHI 266
K ++ G ++I
Sbjct: 1235 FKTYVTVDNLGILYI 1249
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 14/187 (7%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG 164
GH V+ + SP +F++ S D+T+RLW+ + + + + + E ++
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLA 945
Query: 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDA 224
V D I+ + + G A C S +YI I +
Sbjct: 946 V----DHIRRLQLINGRTGQIDYLTEAQVSCC-----CLSPHLQYIAFGDENGAIEILEL 996
Query: 225 YNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPS 284
N + Q+ +K FT D K +IS S D I +WN + C+ H
Sbjct: 997 VNNRIFQSR---FQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQ--LDKCIFLRGHQE 1051
Query: 285 PVQTIQF 291
V+ +
Sbjct: 1052 TVKDFRL 1058
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 103/280 (36%), Gaps = 63/280 (22%)
Query: 88 TVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV 147
+ L L +N+ + H K V + + + T IS S D +++W+ + C
Sbjct: 990 AIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKC------ 1043
Query: 148 SGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKF----------AAEKECD 197
IF G + +T+K D R ++ F KE D
Sbjct: 1044 --------------IFLRG-HQETVK--DFRLLKNSRLLSWSFDGTVKVWNIITGNKEKD 1086
Query: 198 WT---GIKFSADGKYILIS-TNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK 253
+ G S D + ++ S +T ++ L L + GC ++F+ DS
Sbjct: 1087 FVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDST 1146
Query: 254 YVISGSTDGRIHIWNAEKG--FKVCVL-----DADHPSPVQTIQFNPKFNMMASACTNLA 306
+ +G +G I IWN G +C A H V + F+P M+ SA +
Sbjct: 1147 LLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIK 1206
Query: 307 FW-------IPTYLSN-------HQEPD-----TIDNLKI 327
+W T+ +N H PD T+DNL I
Sbjct: 1207 WWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGI 1246
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 103 FP-GHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLR--SPNCQGIMHVSGSRPIAAFDP 158
FP GHT V SL ++ ++ + FISGS D TVRLWDLR S + G F P
Sbjct: 200 FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP 259
Query: 159 EGLIFGVGVNSDTIKLYDVRS------FDKGPFSNFKFAAEKECDW-TGIKFSADGKYIL 211
+G FG G + T +L+D+R+ +++ P N + E T + FS G+ +
Sbjct: 260 DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN-----DNELPIVTSVAFSISGRLLF 314
Query: 212 ISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHIW 267
+ +D + + L N+ + + D + +GS D + IW
Sbjct: 315 AGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 36 LISCSEDDQIVIYDCELGTNKRTVFSKKY----GVDLIRFT-HAKQAAIHASTKIDDTVR 90
LI+ S D V++D G + ++F ++ D++ + ++ A + S D TVR
Sbjct: 173 LITGSGDQTCVLWDVTTG-QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR 231
Query: 91 YLSLH-DNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS 138
L ++ +R + GH +NS+ P F +GS D T RL+D+R+
Sbjct: 232 LWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 215 NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK 274
G +F+ + C +TL G + G +TP+ +++S S DGR+ +WNA K
Sbjct: 44 QGRTAVSFNPTDLVCCRTLQG---HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK 100
Query: 275 VCVLDADHPSPVQTIQFNPKFNMMASACTNL 305
+ H V F P N + AC L
Sbjct: 101 THAIKL-HCPWVMECAFAP--NGQSVACGGL 128
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 101/259 (38%), Gaps = 15/259 (5%)
Query: 13 VAKLFRENTDK-ITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRF 71
V++L N D I S DG LI E + I+D T +
Sbjct: 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147
Query: 72 THAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTV 131
+ + + S D + LH+ +R F GHT + + +S +G D TV
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV 207
Query: 132 RLWDLRSPNCQGIMHVSGSRPIA-AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKF 190
R WDLR Q H S+ + + P G VG+ S +++ V DK ++
Sbjct: 208 RSWDLREGR-QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----YQL 261
Query: 191 AAEKECDWTGIKFSADGKYILISTNGSIIRTFDA-YNGQCLQTLAGFLNNKGCPLEASFT 249
+ C + +KF+ GK+ + + +++ + Y Q+ L +
Sbjct: 262 HLHESCVLS-LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-----KESSSVLSCDIS 315
Query: 250 PDSKYVISGSTDGRIHIWN 268
D KY+++GS D + ++
Sbjct: 316 VDDKYIVTGSGDKKATVYE 334
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 16/223 (7%)
Query: 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG--VDLIRFT 72
+ F +T + S+ +S+D ++S S D I +++ LG K TV + + V +RF+
Sbjct: 122 RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFS 180
Query: 73 HAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVR 132
I S D V+ +L + K GHT +N++ +SP SG D
Sbjct: 181 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAM 240
Query: 133 LWDLRSPNCQGIMHVSGSRPIAA--FDPEGLIFGVGVNSDTIKLYD------VRSFDKGP 184
LWDL + + + G I A F P +IK++D V +
Sbjct: 241 LWDLNEG--KHLYTLDGGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEV 297
Query: 185 FSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG 227
S A +C T + +SADG+ + +++R + G
Sbjct: 298 ISTSSKAEPPQC--TSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 35 LLISCSEDDQIVIY-----DCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89
+++S S D I+++ + G +R + + V + + Q A+ S D T+
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS--WDGTL 110
Query: 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135
R L R F GHTK V S+ S + +SGS DKT++LW+
Sbjct: 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 95/218 (43%), Gaps = 25/218 (11%)
Query: 101 RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC--QGIMHVSGSRPIAAFDP 158
R GH+ V+ + +S +SGS+D T+RLWDL + + + H + AF
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSS 138
Query: 159 EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTG-IKFSADGKYILISTNG- 216
+ G TIKL++ K + E +W ++FS + +I + G
Sbjct: 139 DNRQIVSGSRDKTIKLWNTLGVCK-----YTVQDESHSEWVSCVRFSPNSSNPIIVSCGW 193
Query: 217 -SIIRTFDAYNGQCLQT----LAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEK 271
+++ ++ N + L+T G+LN + +PD SG DG+ +W+ +
Sbjct: 194 DKLVKVWNLANCK-LKTNHIGHTGYLNT------VTVSPDGSLCASGGKDGQAMLWDLNE 246
Query: 272 GFKVCVLDADHPSPVQTIQFNP-KFNMMASACTNLAFW 308
G + LD + + F+P ++ + A+ ++ W
Sbjct: 247 GKHLYTLDGG--DIINALCFSPNRYWLCAATGPSIKIW 282
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 72/193 (37%), Gaps = 47/193 (24%)
Query: 103 FPGHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDL-RSPNCQGIMHVSGSRPIAAFDPEG 160
GH V + +P D +S S DKT+ +W L R GI P+
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI-------------PQR 80
Query: 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIR 220
+ G + F ++ + S+DG++ L + +R
Sbjct: 81 ALRG----------------------HSHFVSD-------VVISSDGQFALSGSWDGTLR 111
Query: 221 TFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA 280
+D G + G + L +F+ D++ ++SGS D I +WN K V D
Sbjct: 112 LWDLTTGTTTRRFVGHTKD---VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE 168
Query: 281 DHPSPVQTIQFNP 293
H V ++F+P
Sbjct: 169 SHSEWVSCVRFSP 181
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 114/278 (41%), Gaps = 35/278 (12%)
Query: 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHA 74
+ R ++ ++ + S+DG +S S D + ++D GT R V + F+
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 75 KQAAIHASTKIDDTVR-YLSLHDNKYIRYFPGHTKKVNSLCLSP--IDDTFISGSYDKTV 131
+ + S D T++ + +L KY H++ V+ + SP + +S +DK V
Sbjct: 140 NRQIVSGSR--DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 197
Query: 132 RLWDLRSPNCQ-GIMHV--SGSRPIAAFDPEGLIFGVGVNSDTIKLYDVR------SFDK 182
++W+L NC+ H+ +G P+G + G L+D+ + D
Sbjct: 198 KVWNL--ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
Query: 183 GPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL---NN 239
G N + FS + +Y L + G I+ +D + L + ++
Sbjct: 256 GDIIN------------ALCFSPN-RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSS 302
Query: 240 KGCPLEAS---FTPDSKYVISGSTDGRIHIWNAEKGFK 274
K P + + ++ D + + +G TD + +W G +
Sbjct: 303 KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 16/223 (7%)
Query: 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG--VDLIRFT 72
+ F +T + S+ +S+D ++S S D I +++ LG K TV + + V +RF+
Sbjct: 99 RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFS 157
Query: 73 HAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVR 132
I S D V+ +L + K GHT +N++ +SP SG D
Sbjct: 158 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAM 217
Query: 133 LWDLRSPNCQGIMHVSGSRPIAA--FDPEGLIFGVGVNSDTIKLYD------VRSFDKGP 184
LWDL + + + G I A F P +IK++D V +
Sbjct: 218 LWDLNEG--KHLYTLDGGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEV 274
Query: 185 FSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG 227
S A +C T + +SADG+ + +++R + G
Sbjct: 275 ISTSSKAEPPQC--TSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 35 LLISCSEDDQIVIY-----DCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89
+++S S D I+++ + G +R + + V + + Q A+ S D T+
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS--WDGTL 87
Query: 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135
R L R F GHTK V S+ S + +SGS DKT++LW+
Sbjct: 88 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 95/218 (43%), Gaps = 25/218 (11%)
Query: 101 RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC--QGIMHVSGSRPIAAFDP 158
R GH+ V+ + +S +SGS+D T+RLWDL + + + H + AF
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSS 115
Query: 159 EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTG-IKFSADGKYILISTNG- 216
+ G TIKL++ K + E +W ++FS + +I + G
Sbjct: 116 DNRQIVSGSRDKTIKLWNTLGVCK-----YTVQDESHSEWVSCVRFSPNSSNPIIVSCGW 170
Query: 217 -SIIRTFDAYNGQCLQT----LAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEK 271
+++ ++ N + L+T G+LN + +PD SG DG+ +W+ +
Sbjct: 171 DKLVKVWNLANCK-LKTNHIGHTGYLNT------VTVSPDGSLCASGGKDGQAMLWDLNE 223
Query: 272 GFKVCVLDADHPSPVQTIQFNP-KFNMMASACTNLAFW 308
G + LD + + F+P ++ + A+ ++ W
Sbjct: 224 GKHLYTLDGG--DIINALCFSPNRYWLCAATGPSIKIW 259
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 114/278 (41%), Gaps = 35/278 (12%)
Query: 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHA 74
+ R ++ ++ + S+DG +S S D + ++D GT R V + F+
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 75 KQAAIHASTKIDDTVR-YLSLHDNKYIRYFPGHTKKVNSLCLSP--IDDTFISGSYDKTV 131
+ + S D T++ + +L KY H++ V+ + SP + +S +DK V
Sbjct: 117 NRQIVSGSR--DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 174
Query: 132 RLWDLRSPNCQ-GIMHV--SGSRPIAAFDPEGLIFGVGVNSDTIKLYDVR------SFDK 182
++W+L NC+ H+ +G P+G + G L+D+ + D
Sbjct: 175 KVWNL--ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
Query: 183 GPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL---NN 239
G N + FS + +Y L + G I+ +D + L + ++
Sbjct: 233 GDIIN------------ALCFSPN-RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSS 279
Query: 240 KGCPLEAS---FTPDSKYVISGSTDGRIHIWNAEKGFK 274
K P + + ++ D + + +G TD + +W G +
Sbjct: 280 KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 317
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 119/299 (39%), Gaps = 55/299 (18%)
Query: 17 FRENTDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAK 75
R +TD +T+I D +++S S D I+++ K T K YGV R T
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILW-------KLTKDDKAYGVAQRRLT--- 427
Query: 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135
GH+ V + LS +SGS+D +RLWD
Sbjct: 428 -----------------------------GHSHFVEDVVLSSDGQFALSGSWDGELRLWD 458
Query: 136 LRSPNCQGIMHVSGSRPI--AAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE 193
L + V ++ + AF + TIKL++ K S E
Sbjct: 459 L-AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE---GGE 514
Query: 194 KECDWTG-IKFSAD--GKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP 250
DW ++FS + I+ ++ ++ ++ N + TLAG + G + +P
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG---HTGYVSTVAVSP 571
Query: 251 DSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP-KFNMMASACTNLAFW 308
D SG DG + +W+ +G K+ L+A+ S + + F+P ++ + A+ + W
Sbjct: 572 DGSLCASGGKDGVVLLWDLAEGKKLYSLEAN--SVIHALCFSPNRYWLCAATEHGIKIW 628
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG----VDLIR 70
+ F +T + S+ +S D ++S S D I +++ LG K T+ G V +R
Sbjct: 466 RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT-LGECKYTISEGGEGHRDWVSCVR 524
Query: 71 FTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKT 130
F+ S D TV+ +L + K GHT V+++ +SP SG D
Sbjct: 525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV 584
Query: 131 VRLWDL 136
V LWDL
Sbjct: 585 VLLWDL 590
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 28/227 (12%)
Query: 35 LLISCSEDDQIVIYDCELGTN---KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91
++++CS+D I ++D T+ +R + + V+++ F + + AS D T++
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG--DRTIKV 280
Query: 92 LSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSG 149
+ +++R GH + + CL D +SGS D T+RLWD+ C ++ H
Sbjct: 281 WNTSTCEFVRTLNGHKRGIA--CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL 338
Query: 150 SRPIAAFDPEGLIFGVGVNSDTIKLYD-VRSFD-KGPFSNFKFAAEKECDWTGIKFSADG 207
R I FD + ++ G IK++D V + D + P E + D
Sbjct: 339 VRCI-RFDNKRIV--SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE 395
Query: 208 KYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKY 254
I+ S++ I +D FLN+ E +P Y
Sbjct: 396 FQIVSSSHDDTILIWD------------FLNDPAAQAEPPRSPSRTY 430
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 102/259 (39%), Gaps = 51/259 (19%)
Query: 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP------ 139
D+T++ + + R GHT V LCL + I+GS D TVR+WD+ +
Sbjct: 152 DNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTL 209
Query: 140 --NCQGIMHV----------SGSRPIAAFDPEG--------LIFGVGVNSDTIKLYDVRS 179
+C+ ++H+ S R IA +D ++ G + + D
Sbjct: 210 IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYI 269
Query: 180 FDKGPFSNFKFAAEKECDWT--------GIK-FSADGKYILISTNGSIIRTFDAYNGQCL 230
K C++ GI + ++ ++ + IR +D G CL
Sbjct: 270 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL 329
Query: 231 QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN--------AEKGFKVCVLDADH 282
+ L G C D+K ++SG+ DG+I +W+ A G +H
Sbjct: 330 RVLEGHEELVRC-----IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH 384
Query: 283 PSPVQTIQFNPKFNMMASA 301
V +QF+ +F +++S+
Sbjct: 385 SGRVFRLQFD-EFQIVSSS 402
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 87/219 (39%), Gaps = 47/219 (21%)
Query: 114 CLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDT 171
CL D +SG D T+++WD + C+ I+ H +GS +D +I G + T
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGH-TGSVLCLQYDERVII--TGSSDST 194
Query: 172 IKLYDVRS------------------FDKGPF----SNFKFAAEKECDWTGIKFSA---- 205
++++DV + F+ G + A T I
Sbjct: 195 VRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG 254
Query: 206 ----------DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYV 255
D KYI+ ++ I+ ++ + ++TL G C + V
Sbjct: 255 HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC-----LQYRDRLV 309
Query: 256 ISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPK 294
+SGS+D I +W+ E G + VL+ H V+ I+F+ K
Sbjct: 310 VSGSSDNTIRLWDIECGACLRVLEG-HEELVRCIRFDNK 347
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 22/129 (17%)
Query: 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91
D ++S S D I +++ RT+ K G+ +++ + + S D+T+R
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY----RDRLVVSGSSDNTIRL 320
Query: 92 LSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSR 151
+ +R GH + V C+ + +SG+YD +++WDL
Sbjct: 321 WDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKIKVWDL--------------- 363
Query: 152 PIAAFDPEG 160
+AA DP
Sbjct: 364 -VAALDPRA 371
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 206 DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIH 265
D + I+ + I+ +D +C + L G + C D + +I+GS+D +
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC-----LQYDERVIITGSSDSTVR 196
Query: 266 IWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFW 308
+W+ G + L H V ++FN + S ++A W
Sbjct: 197 VWDVNTGEMLNTL-IHHCEAVLHLRFNNGMMVTCSKDRSIAVW 238
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 16/165 (9%)
Query: 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS--KKYGVDLIRFTHAKQA 77
+ +++ + +S DG L +CS D + I++ + + S +++ D+
Sbjct: 106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE 165
Query: 78 AIHASTKIDDTVRYLSLHDNKY--IRYFPGHTKKVNSLCLSPIDDTF--ISGSYDKTVRL 133
A+ AS+ DDTVR +D+ + + GH V S + F SGS D TVR+
Sbjct: 166 ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV 225
Query: 134 W--------DLRSPNCQGIMHVSGSRPI--AAFDPEGLIFGVGVN 168
W D + C+ I+ R + A+ GLI VG +
Sbjct: 226 WKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGAD 270
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 3/145 (2%)
Query: 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV-FSKKYGVDLI 69
++ + +++ S+ ++ G LL +CS D + +++ + V + D+
Sbjct: 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154
Query: 70 RFTHAKQAAIHASTKIDDTVRYLSLHDNKYI--RYFPGHTKKVNSLCLSPIDDTFISGSY 127
+ AS DDTV+ ++ ++ GH V SL P S S
Sbjct: 155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD 214
Query: 128 DKTVRLWDLRSPNCQGIMHVSGSRP 152
D+TVR+W P + + SGS P
Sbjct: 215 DRTVRIWRQYLPGNEQGVACSGSDP 239
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/316 (18%), Positives = 124/316 (39%), Gaps = 40/316 (12%)
Query: 27 IDYSADGLLLISCSEDDQIVIYDCELGTN-KRTVFSKKYGVDLIRFTHAKQAAIHASTKI 85
+ ++ G LL SC D +I I+ E + ++V S+ + + + + AS
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 86 DDTVRYLSLHDNKY--IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN--- 140
D T + + + + GH +V S+ +P + + S DK+V +W++ +
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 141 CQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDW 198
C ++ H + + + P + DT+KLY R + + W
Sbjct: 142 CVSVLNSHTQDVKHV-VWHPSQELLASASYDDTVKLY--REEEDDWVCCATLEGHESTVW 198
Query: 199 TGIKFSADGKYILISTNGSIIRTFDAY---------------NGQCLQTLAGFLNNKGCP 243
+ + F G+ + ++ +R + Y + +C+ TL+GF +
Sbjct: 199 S-LAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT--I 255
Query: 244 LEASFTPDSKYVISGSTDGRIHIWNAEKG-------FKVCV-LDADHPSPVQTIQFNPKF 295
+ ++ + + + D I ++ + F + L H V + +NPK
Sbjct: 256 YDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKE 315
Query: 296 NMMASACTN---LAFW 308
+ ++C++ +AFW
Sbjct: 316 PGLLASCSDDGEVAFW 331
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 28/244 (11%)
Query: 92 LSLHDNKY---IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC--QGIMH 146
L+ D K+ +R F GH+ V L+ +S S+DKT+RLWD+ + + + H
Sbjct: 41 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 100
Query: 147 VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS-------FDKGPFSNFKFAAEKECDWT 199
S + D + + G TIK++ ++ S + ++ D
Sbjct: 101 KSDVMSVD-IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKAD-- 157
Query: 200 GIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS 259
D I+ + N +++ A+N Q A F+ + + +PD + S
Sbjct: 158 -----DDSVTIISAGNDKMVK---AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 209
Query: 260 TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP-KFNMMASACTNLAFWI--PTYLSNH 316
DG I +WN + L A V ++ F+P ++ + A+ T + + P YL +
Sbjct: 210 KDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDD 267
Query: 317 QEPD 320
P+
Sbjct: 268 LRPE 271
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 91/242 (37%), Gaps = 38/242 (15%)
Query: 5 DNVIRSYKVA-----KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
D +R + VA + F + + S+D ++IS S D I ++ + G T+
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 138
Query: 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRY-----------FPGHTK 108
V +R ++A DD+V +S ++K ++ F GH
Sbjct: 139 LGHNDWVSQVRVVPNEKAD-------DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 191
Query: 109 KVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVN 168
+N+L SP S D + LW+L + + AF P
Sbjct: 192 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA 251
Query: 169 SDTIKLYDVRSFD--------KGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIR 220
+ IK++ S D + F+ + AAE + +SADG+ + ++IR
Sbjct: 252 TG-IKVF---SLDPQYLVDDLRPEFAGYSKAAEPHA--VSLAWSADGQTLFAGYTDNVIR 305
Query: 221 TF 222
+
Sbjct: 306 VW 307
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 116/269 (43%), Gaps = 32/269 (11%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELG-TNKRTVFSKKYGVDLIRFTHAK 75
F+ ++ + +ADG +S S D + ++D G T +R V K D++ K
Sbjct: 55 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS---DVMSVDIDK 111
Query: 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP---IDD---TFISGSYDK 129
+A++ S D T++ ++ + + GH V+ + + P DD T IS DK
Sbjct: 112 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 130 TVRLWDLRSPNCQG--IMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSN 187
V+ W+L + I H S + A P+G + I L+++ + +
Sbjct: 171 MVKAWNLNQFQIEADFIGHNSNINTLTA-SPDGTLIASAGKDGEIMLWNLAA----KKAM 225
Query: 188 FKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL-----QTLAGFLNNKGC 242
+ +A+ E + FS + +Y L + + I+ F + + Q L AG+ +K
Sbjct: 226 YTLSAQDEV--FSLAFSPN-RYWLAAATATGIKVF-SLDPQYLVDDLRPEFAGY--SKAA 279
Query: 243 PLEA---SFTPDSKYVISGSTDGRIHIWN 268
A +++ D + + +G TD I +W
Sbjct: 280 EPHAVSLAWSADGQTLFAGYTDNVIRVWQ 308
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 28/244 (11%)
Query: 92 LSLHDNKY---IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC--QGIMH 146
L+ D K+ +R F GH+ V L+ +S S+DKT+RLWD+ + + + H
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 147 VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS-------FDKGPFSNFKFAAEKECDWT 199
S + D + + G TIK++ ++ S + ++ D
Sbjct: 107 KSDVMSVD-IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKAD-- 163
Query: 200 GIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS 259
D I+ + N +++ A+N Q A F+ + + +PD + S
Sbjct: 164 -----DDSVTIISAGNDKMVK---AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215
Query: 260 TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP-KFNMMASACTNLAFWI--PTYLSNH 316
DG I +WN + L A V ++ F+P ++ + A+ T + + P YL +
Sbjct: 216 KDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDD 273
Query: 317 QEPD 320
P+
Sbjct: 274 LRPE 277
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 91/242 (37%), Gaps = 38/242 (15%)
Query: 5 DNVIRSYKVA-----KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
D +R + VA + F + + S+D ++IS S D I ++ + G T+
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Query: 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRY-----------FPGHTK 108
V +R ++A DD+V +S ++K ++ F GH
Sbjct: 145 LGHNDWVSQVRVVPNEKAD-------DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
Query: 109 KVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVN 168
+N+L SP S D + LW+L + + AF P
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA 257
Query: 169 SDTIKLYDVRSFD--------KGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIR 220
+ IK++ S D + F+ + AAE + +SADG+ + ++IR
Sbjct: 258 TG-IKVF---SLDPQYLVDDLRPEFAGYSKAAEPHA--VSLAWSADGQTLFAGYTDNVIR 311
Query: 221 TF 222
+
Sbjct: 312 VW 313
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 116/269 (43%), Gaps = 32/269 (11%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELG-TNKRTVFSKKYGVDLIRFTHAK 75
F+ ++ + +ADG +S S D + ++D G T +R V K D++ K
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS---DVMSVDIDK 117
Query: 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP---IDD---TFISGSYDK 129
+A++ S D T++ ++ + + GH V+ + + P DD T IS DK
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 130 TVRLWDLRSPNCQG--IMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSN 187
V+ W+L + I H S + A P+G + I L+++ + +
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTA-SPDGTLIASAGKDGEIMLWNLAA----KKAM 231
Query: 188 FKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL-----QTLAGFLNNKGC 242
+ +A+ E + FS + +Y L + + I+ F + + Q L AG+ +K
Sbjct: 232 YTLSAQDEV--FSLAFSPN-RYWLAAATATGIKVF-SLDPQYLVDDLRPEFAGY--SKAA 285
Query: 243 PLEA---SFTPDSKYVISGSTDGRIHIWN 268
A +++ D + + +G TD I +W
Sbjct: 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 28/244 (11%)
Query: 92 LSLHDNKY---IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC--QGIMH 146
L+ D K+ +R F GH+ V L+ +S S+DKT+RLWD+ + + + H
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 147 VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS-------FDKGPFSNFKFAAEKECDWT 199
S + D + + G TIK++ ++ S + ++ D
Sbjct: 107 KSDVMSVD-IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKAD-- 163
Query: 200 GIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS 259
D I+ + N +++ A+N Q A F+ + + +PD + S
Sbjct: 164 -----DDSVTIISAGNDKMVK---AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215
Query: 260 TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP-KFNMMASACTNLAFWI--PTYLSNH 316
DG I +WN + L A V ++ F+P ++ + A+ T + + P YL +
Sbjct: 216 KDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDD 273
Query: 317 QEPD 320
P+
Sbjct: 274 LRPE 277
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 91/242 (37%), Gaps = 38/242 (15%)
Query: 5 DNVIRSYKVA-----KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
D +R + VA + F + + S+D ++IS S D I ++ + G T+
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Query: 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRY-----------FPGHTK 108
V +R ++A DD+V +S ++K ++ F GH
Sbjct: 145 LGHNDWVSQVRVVPNEKAD-------DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
Query: 109 KVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVN 168
+N+L SP S D + LW+L + + AF P
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA 257
Query: 169 SDTIKLYDVRSFD--------KGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIR 220
+ IK++ S D + F+ + AAE + +SADG+ + ++IR
Sbjct: 258 TG-IKVF---SLDPQYLVDDLRPEFAGYSKAAEPHA--VSLAWSADGQTLFAGYTDNVIR 311
Query: 221 TF 222
+
Sbjct: 312 VW 313
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 116/269 (43%), Gaps = 32/269 (11%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELG-TNKRTVFSKKYGVDLIRFTHAK 75
F+ ++ + +ADG +S S D + ++D G T +R V K D++ K
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS---DVMSVDIDK 117
Query: 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP---IDD---TFISGSYDK 129
+A++ S D T++ ++ + + GH V+ + + P DD T IS DK
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 130 TVRLWDLRSPNCQG--IMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSN 187
V+ W+L + I H S + A P+G + I L+++ + +
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTA-SPDGTLIASAGKDGEIMLWNLAA----KKAM 231
Query: 188 FKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL-----QTLAGFLNNKGC 242
+ +A+ E + FS + +Y L + + I+ F + + Q L AG+ +K
Sbjct: 232 YTLSAQDEV--FSLAFSPN-RYWLAAATATGIKVF-SLDPQYLVDDLRPEFAGY--SKAA 285
Query: 243 PLEA---SFTPDSKYVISGSTDGRIHIWN 268
A +++ D + + +G TD I +W
Sbjct: 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 28/244 (11%)
Query: 92 LSLHDNKY---IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC--QGIMH 146
L+ D K+ +R F GH+ V L+ +S S+DKT+RLWD+ + + + H
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 147 VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS-------FDKGPFSNFKFAAEKECDWT 199
S + D + + G TIK++ ++ S + ++ D
Sbjct: 107 KSDVMSVD-IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKAD-- 163
Query: 200 GIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS 259
D I+ + N +++ A+N Q A F+ + + +PD + S
Sbjct: 164 -----DDSVTIISAGNDKMVK---AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215
Query: 260 TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP-KFNMMASACTNLAFWI--PTYLSNH 316
DG I +WN + L A V ++ F+P ++ + A+ T + + P YL +
Sbjct: 216 KDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDD 273
Query: 317 QEPD 320
P+
Sbjct: 274 LRPE 277
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 91/242 (37%), Gaps = 38/242 (15%)
Query: 5 DNVIRSYKVA-----KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
D +R + VA + F + + S+D ++IS S D I ++ + G T+
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Query: 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRY-----------FPGHTK 108
V +R ++A DD+V +S ++K ++ F GH
Sbjct: 145 LGHNDWVSQVRVVPNEKAD-------DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
Query: 109 KVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVN 168
+N+L SP S D + LW+L + + AF P
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA 257
Query: 169 SDTIKLYDVRSFD--------KGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIR 220
+ IK++ S D + F+ + AAE + +SADG+ + ++IR
Sbjct: 258 TG-IKVF---SLDPQYLVDDLRPEFAGYSKAAEPHA--VSLAWSADGQTLFAGYTDNVIR 311
Query: 221 TF 222
+
Sbjct: 312 VW 313
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 116/269 (43%), Gaps = 32/269 (11%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELG-TNKRTVFSKKYGVDLIRFTHAK 75
F+ ++ + +ADG +S S D + ++D G T +R V K D++ K
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS---DVMSVDIDK 117
Query: 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP---IDD---TFISGSYDK 129
+A++ S D T++ ++ + + GH V+ + + P DD T IS DK
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 130 TVRLWDLRSPNCQG--IMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSN 187
V+ W+L + I H S + A P+G + I L+++ + +
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTA-SPDGTLIASAGKDGEIMLWNLAA----KKAM 231
Query: 188 FKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL-----QTLAGFLNNKGC 242
+ +A+ E + FS + +Y L + + I+ F + + Q L AG+ +K
Sbjct: 232 YTLSAQDEV--FSLAFSPN-RYWLAAATATGIKVF-SLDPQYLVDDLRPEFAGY--SKAA 285
Query: 243 PLEA---SFTPDSKYVISGSTDGRIHIWN 268
A +++ D + + +G TD I +W
Sbjct: 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 28/244 (11%)
Query: 92 LSLHDNKY---IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC--QGIMH 146
L+ D K+ +R F GH+ V L+ +S S+DKT+RLWD+ + + + H
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 147 VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS-------FDKGPFSNFKFAAEKECDWT 199
S + D + + G TIK++ ++ S + ++ D
Sbjct: 107 KSDVMSVD-IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKAD-- 163
Query: 200 GIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS 259
D I+ + N +++ A+N Q A F+ + + +PD + S
Sbjct: 164 -----DDSVTIISAGNDKMVK---AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215
Query: 260 TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP-KFNMMASACTNLAFWI--PTYLSNH 316
DG I +WN + L A V ++ F+P ++ + A+ T + + P YL +
Sbjct: 216 KDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDD 273
Query: 317 QEPD 320
P+
Sbjct: 274 LRPE 277
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 91/242 (37%), Gaps = 38/242 (15%)
Query: 5 DNVIRSYKVA-----KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
D +R + VA + F + + S+D ++IS S D I ++ + G T+
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Query: 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRY-----------FPGHTK 108
V +R ++A DD+V +S ++K ++ F GH
Sbjct: 145 LGHNDWVSQVRVVPNEKAD-------DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
Query: 109 KVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVN 168
+N+L SP S D + LW+L + + AF P
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA 257
Query: 169 SDTIKLYDVRSFD--------KGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIR 220
+ IK++ S D + F+ + AAE + +SADG+ + ++IR
Sbjct: 258 TG-IKVF---SLDPQYLVDDLRPEFAGYSAAAEPHA--VSLAWSADGQTLFAGYTDNVIR 311
Query: 221 TF 222
+
Sbjct: 312 VW 313
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 115/267 (43%), Gaps = 28/267 (10%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELG-TNKRTVFSKKYGVDLIRFTHAK 75
F+ ++ + +ADG +S S D + ++D G T +R V K D++ K
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS---DVMSVDIDK 117
Query: 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP---IDD---TFISGSYDK 129
+A++ S D T++ ++ + + GH V+ + + P DD T IS DK
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 130 TVRLWDLRSPNCQG--IMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSN 187
V+ W+L + I H S + A P+G + I L+++ + +
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTA-SPDGTLIASAGKDGEIMLWNLAA----KKAM 231
Query: 188 FKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL-----QTLAGF-LNNKG 241
+ +A+ E + FS + +Y L + + I+ F + + Q L AG+ +
Sbjct: 232 YTLSAQDEV--FSLAFSPN-RYWLAAATATGIKVF-SLDPQYLVDDLRPEFAGYSAAAEP 287
Query: 242 CPLEASFTPDSKYVISGSTDGRIHIWN 268
+ +++ D + + +G TD I +W
Sbjct: 288 HAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 84/195 (43%), Gaps = 21/195 (10%)
Query: 125 GSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGP 184
G+ V+LWD++ M S S + + I G S I +DVR +
Sbjct: 85 GTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH-H 142
Query: 185 FSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC----LQTLAGFLNNK 240
+ +++ C G++++ DG+++ N +++ + + G+ LQT F ++
Sbjct: 143 VATLSGHSQEVC---GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT---FTQHQ 196
Query: 241 GCPLEASFTPDSKYVIS---GSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNM 297
G ++ P V++ G++D I IWN G C+ D S V +I ++P +
Sbjct: 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLSAVDAHSQVCSILWSPHYKE 254
Query: 298 MAS----ACTNLAFW 308
+ S A L W
Sbjct: 255 LISGHGFAQNQLVIW 269
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 100 IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLW 134
+ GHT +V SL +SP T S + D+T+RLW
Sbjct: 277 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 65/151 (43%), Gaps = 13/151 (8%)
Query: 155 AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST 214
A+ EG VG +S ++L+DV+ + A W S+ + I
Sbjct: 74 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHH 133
Query: 215 NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNA---EK 271
+ +R + + + TL+G + + C L + PD +++ SG D +++W + E
Sbjct: 134 HD--VRVAEHH----VATLSGH-SQEVCGLR--WAPDGRHLASGGNDNLVNVWPSAPGEG 184
Query: 272 GFKVCVLDADHPSPVQTIQFNP-KFNMMASA 301
G+ H V+ + + P + N++A+
Sbjct: 185 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 215
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 84/195 (43%), Gaps = 21/195 (10%)
Query: 125 GSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGP 184
G+ V+LWD++ M S S + + I G S I +DVR +
Sbjct: 165 GTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH- 222
Query: 185 FSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC----LQTLAGFLNNK 240
+ +++ C G++++ DG+++ N +++ + + G+ LQT F ++
Sbjct: 223 VATLSGHSQEVC---GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT---FTQHQ 276
Query: 241 GCPLEASFTPDSKYVIS---GSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNM 297
G ++ P V++ G++D I IWN G C+ D S V +I ++P +
Sbjct: 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLSAVDAHSQVCSILWSPHYKE 334
Query: 298 MAS----ACTNLAFW 308
+ S A L W
Sbjct: 335 LISGHGFAQNQLVIW 349
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 100 IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLW 134
+ GHT +V SL +SP T S + D+T+RLW
Sbjct: 357 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 65/151 (43%), Gaps = 13/151 (8%)
Query: 155 AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST 214
A+ EG VG +S ++L+DV+ + A W S+ + I
Sbjct: 154 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHH 213
Query: 215 NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNA---EK 271
+ +R + + + TL+G + + C L + PD +++ SG D +++W + E
Sbjct: 214 HD--VRVAEHH----VATLSGH-SQEVCGLR--WAPDGRHLASGGNDNLVNVWPSAPGEG 264
Query: 272 GFKVCVLDADHPSPVQTIQFNP-KFNMMASA 301
G+ H V+ + + P + N++A+
Sbjct: 265 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 295
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 84/195 (43%), Gaps = 21/195 (10%)
Query: 125 GSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGP 184
G+ V+LWD++ M S S + + I G S I +DVR +
Sbjct: 176 GTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH- 233
Query: 185 FSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC----LQTLAGFLNNK 240
+ +++ C G++++ DG+++ N +++ + + G+ LQT F ++
Sbjct: 234 VATLSGHSQEVC---GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT---FTQHQ 287
Query: 241 GCPLEASFTPDSKYVIS---GSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNM 297
G ++ P V++ G++D I IWN G C+ D S V +I ++P +
Sbjct: 288 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLSAVDAHSQVCSILWSPHYKE 345
Query: 298 MAS----ACTNLAFW 308
+ S A L W
Sbjct: 346 LISGHGFAQNQLVIW 360
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLW 134
GHT +V SL +SP T S + D+T+RLW
Sbjct: 373 GHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 65/151 (43%), Gaps = 13/151 (8%)
Query: 155 AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST 214
A+ EG VG +S ++L+DV+ + A W S+ + I
Sbjct: 165 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHH 224
Query: 215 NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNA---EK 271
+ +R + + + TL+G + + C L + PD +++ SG D +++W + E
Sbjct: 225 HD--VRVAEHH----VATLSGH-SQEVCGLR--WAPDGRHLASGGNDNLVNVWPSAPGEG 275
Query: 272 GFKVCVLDADHPSPVQTIQFNP-KFNMMASA 301
G+ H V+ + + P + N++A+
Sbjct: 276 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 306
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 24/242 (9%)
Query: 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM 145
D +R + K++ GH V +L + +SGS D+TVR+WD++ C +
Sbjct: 141 DKXIRVYDSINKKFLLQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVF 199
Query: 146 --HVSGSRPIAAFDPEGLIFGV-GVNSDTIKLYDVRSF----DKGPFSNFKFA---AEKE 195
H S R + + + + + V G +T+ ++ + D G ++ E+
Sbjct: 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259
Query: 196 CDWTGIKFSADGKYILISTNGSIIRT---------FDAYNGQCLQTLAGFLNNKGCPLEA 246
+ G+ +S +G+I+ + +D +CL L+G + +
Sbjct: 260 PYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTI-- 317
Query: 247 SFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNLA 306
+ + K IS S D I IW+ E G L H + V ++ + KF + A+A ++
Sbjct: 318 -YDHERKRCISASXDTTIRIWDLENGELXYTLQG-HTALVGLLRLSDKFLVSAAADGSIR 375
Query: 307 FW 308
W
Sbjct: 376 GW 377
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 95/260 (36%), Gaps = 41/260 (15%)
Query: 36 LISCSEDDQIVIYDCELGTNKRTVFS---KKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92
+I+ ++D I +YD NK+ + GV +++ H I S D TVR
Sbjct: 135 VITGADDKXIRVYDS---INKKFLLQLSGHDGGVWALKYAHG---GILVSGSTDRTVRVW 188
Query: 93 SLHDNKYIRYFPGHTKKVNSLCLSPID----DTFISGSYDKTVRLWDLRSPNCQGIMHVS 148
+ F GH V CL ++ ++GS D T+ +W L +
Sbjct: 189 DIKKGCCTHVFEGHNSTVR--CLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246
Query: 149 GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD-------KGPFSNFKFA---AEKECDW 198
P+ PE + VGV VR+ G + N A+ +C +
Sbjct: 247 HDYPLVFHTPEENPYFVGVLRGHXA--SVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLY 304
Query: 199 T---------GIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249
+ + K + ++ + IR +D NG+ TL G L
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGH-----TALVGLLR 359
Query: 250 PDSKYVISGSTDGRIHIWNA 269
K+++S + DG I W+A
Sbjct: 360 LSDKFLVSAAADGSIRGWDA 379
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 16/122 (13%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y++ + IR +D+ N + L L+G + G + ++SGSTD + +W+
Sbjct: 134 YVITGADDKXIRVYDSINKKFLLQLSG---HDGGVWALKY-AHGGILVSGSTDRTVRVWD 189
Query: 269 AEKGFKVCVLDADHPSPVQTIQF----NPKFNMMASACTNLAFW-------IPTYLSNHQ 317
+KG V + H S V+ + N K+ + S L W +P + H
Sbjct: 190 IKKGCCTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 248
Query: 318 EP 319
P
Sbjct: 249 YP 250
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 11/139 (7%)
Query: 5 DNVIRSYKVAK-----LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
DN + + VA+ + +TD+I S Y + IS S D I I+D E G T+
Sbjct: 289 DNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTL 348
Query: 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID 119
V L+R + S D ++R N Y R F H ++++ +
Sbjct: 349 QGHTALVGLLRLS----DKFLVSAAADGSIR--GWDANDYSRKFSYHHTNLSAITTFYVS 402
Query: 120 DTFISGSYDKTVRLWDLRS 138
D + + +++LRS
Sbjct: 403 DNILVSGSENQFNIYNLRS 421
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 99/242 (40%), Gaps = 24/242 (9%)
Query: 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM 145
D +R + K++ GH V +L + +SGS D+TVR+WD++ C +
Sbjct: 141 DKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVF 199
Query: 146 --HVSGSRPIAAFDPEGLIFGV-GVNSDTIKLYDVRSF----DKG-----------PFSN 187
H S R + + + + + V G +T+ ++ + D G P N
Sbjct: 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259
Query: 188 FKFAAEKECDWTGIK-FSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA 246
F ++ S G ++ + + + +D +CL L+G + +
Sbjct: 260 PYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI-- 317
Query: 247 SFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNLA 306
+ + K IS S D I IW+ E G + L H + V ++ + KF + A+A ++
Sbjct: 318 -YDHERKRCISASMDTTIRIWDLENGELMYTLQG-HTALVGLLRLSDKFLVSAAADGSIR 375
Query: 307 FW 308
W
Sbjct: 376 GW 377
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 103/266 (38%), Gaps = 53/266 (19%)
Query: 36 LISCSEDDQIVIYDCELGTNKRTVFS---KKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92
+I+ ++D I +YD NK+ + GV +++ H I S D TVR
Sbjct: 135 VITGADDKMIRVYDS---INKKFLLQLSGHDGGVWALKYAHG---GILVSGSTDRTVRVW 188
Query: 93 SLHDNKYIRYFPGHTKKVNSLCLSPID----DTFISGSYDKTVRLWDL------------ 136
+ F GH V CL ++ ++GS D T+ +W L
Sbjct: 189 DIKKGCCTHVFEGHNSTVR--CLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246
Query: 137 -----------RSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKG 183
+P G++ H++ R ++ G I G +T+ ++DV
Sbjct: 247 HDYPLVFHTPEENPYFVGVLRGHMASVRTVSG---HGNIVVSGSYDNTLIVWDVAQMK-- 301
Query: 184 PFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCP 243
+ + + ++ I + + K + ++ + IR +D NG+ + TL G
Sbjct: 302 --CLYILSGHTDRIYSTI-YDHERKRCISASMDTTIRIWDLENGELMYTLQGH-----TA 353
Query: 244 LEASFTPDSKYVISGSTDGRIHIWNA 269
L K+++S + DG I W+A
Sbjct: 354 LVGLLRLSDKFLVSAAADGSIRGWDA 379
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 16/122 (13%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y++ + +IR +D+ N + L L+G + G + ++SGSTD + +W+
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQLSG---HDGGVWALKY-AHGGILVSGSTDRTVRVWD 189
Query: 269 AEKGFKVCVLDADHPSPVQTIQF----NPKFNMMASACTNLAFW-------IPTYLSNHQ 317
+KG V + H S V+ + N K+ + S L W +P + H
Sbjct: 190 IKKGCCTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 248
Query: 318 EP 319
P
Sbjct: 249 YP 250
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 11/139 (7%)
Query: 5 DNVIRSYKVAKL-----FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
DN + + VA++ +TD+I S Y + IS S D I I+D E G T+
Sbjct: 289 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348
Query: 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID 119
V L+R + S D ++R N Y R F H ++++ +
Sbjct: 349 QGHTALVGLLRLS----DKFLVSAAADGSIR--GWDANDYSRKFSYHHTNLSAITTFYVS 402
Query: 120 DTFISGSYDKTVRLWDLRS 138
D + + +++LRS
Sbjct: 403 DNILVSGSENQFNIYNLRS 421
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 95/244 (38%), Gaps = 28/244 (11%)
Query: 92 LSLHDNKY---IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC--QGIMH 146
L+ D K+ +R F GH+ V L+ +S S+DKT+RLWD+ + + + H
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 147 VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS-------FDKGPFSNFKFAAEKECDWT 199
S + D + G TIK++ ++ S + ++ D
Sbjct: 107 KSDVXSVD-IDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKAD-- 163
Query: 200 GIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS 259
D +IS + A+N Q A F+ + + +PD + S
Sbjct: 164 ------DDSVTIISAGND--KXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215
Query: 260 TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP-KFNMMASACTNLAFWI--PTYLSNH 316
DG I +WN L A V ++ F+P ++ + A+ T + + P YL +
Sbjct: 216 KDGEIXLWNLAAKKAXYTLSAQ--DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDD 273
Query: 317 QEPD 320
P+
Sbjct: 274 LRPE 277
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 89/235 (37%), Gaps = 24/235 (10%)
Query: 5 DNVIRSYKVA-----KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
D +R + VA + F + + S+D +IS S D I ++ + G T+
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK-GQCLATL 144
Query: 60 FSKKYGVDLIRFTHAKQAAIHASTKI----DDTVRYLSLHDNKYIRYFPGHTKKVNSLCL 115
V +R ++A + T I D V+ +L+ + F GH +N+L
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTA 204
Query: 116 SPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLY 175
SP S D + LW+L + + AF P + IK++
Sbjct: 205 SPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVF 263
Query: 176 DVRSFD--------KGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTF 222
S D + F+ + AAE + +SADG+ + ++IR +
Sbjct: 264 ---SLDPQYLVDDLRPEFAGYSKAAEPHA--VSLAWSADGQTLFAGYTDNVIRVW 313
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 114/269 (42%), Gaps = 32/269 (11%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELG-TNKRTVFSKKYGVDLIRFTHAK 75
F+ ++ + +ADG +S S D + ++D G T +R V K D+ K
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS---DVXSVDIDK 117
Query: 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP---IDD---TFISGSYDK 129
+A+ S D T++ ++ + + GH V+ + + P DD T IS DK
Sbjct: 118 KASXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 130 TVRLWDLRSPNCQG--IMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSN 187
V+ W+L + I H S + A P+G + I L+++ + +
Sbjct: 177 XVKAWNLNQFQIEADFIGHNSNINTLTA-SPDGTLIASAGKDGEIXLWNLAA----KKAX 231
Query: 188 FKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL-----QTLAGFLNNKGC 242
+ +A+ E + FS + +Y L + + I+ F + + Q L AG+ +K
Sbjct: 232 YTLSAQDEV--FSLAFSPN-RYWLAAATATGIKVF-SLDPQYLVDDLRPEFAGY--SKAA 285
Query: 243 PLEA---SFTPDSKYVISGSTDGRIHIWN 268
A +++ D + + +G TD I +W
Sbjct: 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/345 (20%), Positives = 126/345 (36%), Gaps = 87/345 (25%)
Query: 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT--------------NK 56
+K F E+T + S+ Y+ DG L S D IV+Y+ GT +
Sbjct: 180 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 239
Query: 57 RTVFSKKYGVDLIRFTHAK---------------QAAIHASTKIDDT--------VRYLS 93
+VF + D + A + I T+I+D +S
Sbjct: 240 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS 299
Query: 94 LHDNKYIRYFP-----------GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS---- 138
+ N +I + GH K + +L S T S + + WD+ +
Sbjct: 300 ISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN 359
Query: 139 ---PNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKE 195
P+ M ++G + + +G +F V + D +K+ V + G S+ A +
Sbjct: 360 RVFPDVHATM-ITGIKTTS----KGDLFTVSWD-DHLKV--VPAGGSGVDSSKAVANKLS 411
Query: 196 CDWTGIKFSADG--------KYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247
G+ SADG K+I I ++G + +YN C+ +
Sbjct: 412 SQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCV----------------A 455
Query: 248 FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFN 292
+ D ++V G D ++H++ V HP+ + ++ F+
Sbjct: 456 LSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS 500
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 106 HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDP-----EG 160
HT KV + SP + +GS D +V +W++ P+ I+ + G+ +++ + E
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII-IKGAHAMSSVNSVIWLNET 593
Query: 161 LIFGVGVNSDTIKLYDV 177
I G +S+ IK ++V
Sbjct: 594 TIVSAGQDSN-IKFWNV 609
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 84/222 (37%), Gaps = 17/222 (7%)
Query: 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWD---------L 136
D+TV K+ F HTK V+S+ +P F S D T+ L++
Sbjct: 169 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF 228
Query: 137 RSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC 196
+ + + H SGS + P+G TIK+++V + E
Sbjct: 229 EDDSLKNVAH-SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE--KTIPVGTRIED 285
Query: 197 DWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI 256
GI ++ + IS NG I + G Q G +NK +S + D K +
Sbjct: 286 QQLGIIWTKQA-LVSISANG-FINFVNPELGSIDQVRYG--HNKAITALSS-SADGKTLF 340
Query: 257 SGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMM 298
S +G I+ W+ G V H + + I+ K ++
Sbjct: 341 SADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 382
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 80/190 (42%), Gaps = 23/190 (12%)
Query: 106 HTKKVNSLCLSPID-DTFISGSYDKTVRLWD---LRSPNCQGIMHVSGSRPIAAFDPEGL 161
H V ++ P D F S S+DKT+++WD L++ + S ++ +
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 162 IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-SIIR 220
+ VG ++L D++S G S+ +E + +S YIL + + S ++
Sbjct: 158 LVAVGTRGPKVQLCDLKS---GSCSHILQGHRQEI--LAVSWSPRYDYILATASADSRVK 212
Query: 221 TFDAYNGQ-CLQTLAGFLNNKGCPLEAS------------FTPDSKYVISGSTDGRIHIW 267
+D CL TL K +E++ FT D ++++ TD R+ +W
Sbjct: 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272
Query: 268 NAEKGFKVCV 277
N+ G V
Sbjct: 273 NSSNGENTLV 282
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 125/318 (39%), Gaps = 46/318 (14%)
Query: 32 DGLLLISCSEDDQIVIYD---------------CELGTNKRTVFSKKYGVDLIRFTHAKQ 76
+G ++S D IV+YD C +G + V +Y V+ +++ +
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH--RYSVETVQW-YPHD 111
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT---FISGSYDKTVRL 133
+ S+ D T++ + + F + V S +SP+ G+ V+L
Sbjct: 112 TGMFTSSSFDKTLKVWDTNTLQTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170
Query: 134 WDLRSPNCQGIMHVSGSRPIA-AFDPE-GLIFGVGVNSDTIKLYDVRSFDKGPFS----N 187
DL+S +C I+ +A ++ P I +KL+DVR + N
Sbjct: 171 CDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230
Query: 188 FKFAAEKECDWT-------GIKFSADGKYILISTNGSIIRTFDAYNGQ-CLQTLAGFLNN 239
K + E T G+ F++DG ++L + +R +++ NG+ L NN
Sbjct: 231 GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNN 290
Query: 240 --KGCPLEASFTPDSKYVIS--GSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKF 295
KG S S++V GST I ++ G ++ +L H V F F
Sbjct: 291 SKKGLKFTVSCGCSSEFVFVPYGST---IAVYTVYSGEQITMLKG-HYKTVDCCVFQSNF 346
Query: 296 NMMASACT--NLAFWIPT 311
+ S N+ W+P+
Sbjct: 347 QELYSGSRDCNILAWVPS 364
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 6/167 (3%)
Query: 96 DNKYIRYFPGHTKKVNSLCLSPIDDTFIS-GSYDKTVRLWDLRSPNCQG--IMHVSGSRP 152
D K + H KKV + L+P D F++ S D+TV++WDLR + + + P
Sbjct: 239 DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHP 298
Query: 153 I--AAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYI 210
+ A F P+G I++Y +D P T IK + +Y
Sbjct: 299 VNAACFSPDGARLLTTDQKSEIRVYSASQWD-CPLGLIPHPHRHFQHLTPIKAAWHPRYN 357
Query: 211 LISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS 257
LI F + L+T+ F N G + + P+S + S
Sbjct: 358 LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISS 404
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 6/167 (3%)
Query: 96 DNKYIRYFPGHTKKVNSLCLSPIDDTFIS-GSYDKTVRLWDLRSPNCQG--IMHVSGSRP 152
D K + H KKV + L+P D F++ S D+TV++WDLR + + + P
Sbjct: 239 DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHP 298
Query: 153 I--AAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYI 210
+ A F P+G I++Y +D P T IK + +Y
Sbjct: 299 VNAACFSPDGARLLTTDQKSEIRVYSASQWD-CPLGLIPHPHRHFQHLTPIKAAWHPRYN 357
Query: 211 LISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS 257
LI F + L+T+ F N G + + P+S + S
Sbjct: 358 LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISS 404
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 199 TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISG 258
T +K++ +G + + S + + NG+ L TL G + G +KY ++G
Sbjct: 36 TQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG---HTGTIWSIDVDCFTKYCVTG 92
Query: 259 STDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNL 305
S D I +W+ G CV P PV+ ++F+P N + N+
Sbjct: 93 SADYSIKLWDVSNG--QCVATWKSPVPVKRVEFSPCGNYFLAILDNV 137
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 76/194 (39%), Gaps = 42/194 (21%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIF- 163
GHT + S+ + ++GS D +++LWD+ + C F P G F
Sbjct: 72 GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFL 131
Query: 164 ----GVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSII 219
V N +I +Y++ + +A E K S + + +I+ G
Sbjct: 132 AILDNVMKNPGSINIYEIE----------RDSATHEL----TKVSEEPIHKIITHEG--- 174
Query: 220 RTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD 279
DA T+AG+ + KG KY+I+G DG+I ++ ++
Sbjct: 175 --LDA------ATVAGW-STKG-----------KYIIAGHKDGKISKYDVSNNYEYVDSI 214
Query: 280 ADHPSPVQTIQFNP 293
H + +QF+P
Sbjct: 215 DLHEKSISDMQFSP 228
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 90/196 (45%), Gaps = 21/196 (10%)
Query: 105 GHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRS-PNCQGIM--------HVSGSRPIA 154
GH K+ L +P ++ +S S D T+ LWD+ + P ++ H + +A
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 238
Query: 155 AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNF--KFAAEKECDWTGIKFSADGKYILI 212
+FG + + ++D R+ + S+ AE C + F+ ++IL
Sbjct: 239 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC----LSFNPYSEFILA 294
Query: 213 STNGSIIRTFDAYNGQCLQ-TLAGFLNNKGCPLEASFTPDSKYVISGS-TDGRIHIWNAE 270
+ GS +T ++ + L+ L F ++K + ++P ++ +++ S TD R+H+W+
Sbjct: 295 T--GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352
Query: 271 K-GFKVCVLDADHPSP 285
K G + DA+ P
Sbjct: 353 KIGEEQSTEDAEDGPP 368
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 36 LISCSEDDQIVIYDCELGTNK------RTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89
L+S S+D I ++D + + +F+ V H ++ S D +
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256
Query: 90 RYLSLHDN---KYIRYFPGHTKKVNSLCLSPIDDTFIS-GSYDKTVRLWDLRS 138
+N K HT +VN L +P + ++ GS DKTV LWDLR+
Sbjct: 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 90/196 (45%), Gaps = 21/196 (10%)
Query: 105 GHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRS-PNCQGIM--------HVSGSRPIA 154
GH K+ L +P ++ +S S D T+ LWD+ + P ++ H + +A
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 240
Query: 155 AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNF--KFAAEKECDWTGIKFSADGKYILI 212
+FG + + ++D R+ + S+ AE C + F+ ++IL
Sbjct: 241 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC----LSFNPYSEFILA 296
Query: 213 STNGSIIRTFDAYNGQCLQ-TLAGFLNNKGCPLEASFTPDSKYVISGS-TDGRIHIWNAE 270
+ GS +T ++ + L+ L F ++K + ++P ++ +++ S TD R+H+W+
Sbjct: 297 T--GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
Query: 271 K-GFKVCVLDADHPSP 285
K G + DA+ P
Sbjct: 355 KIGEEQSTEDAEDGPP 370
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 36 LISCSEDDQIVIYDCELGTNK------RTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89
L+S S+D I ++D + + +F+ V H ++ S D +
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258
Query: 90 RYLSLHDN---KYIRYFPGHTKKVNSLCLSPIDDTFIS-GSYDKTVRLWDLRS 138
+N K HT +VN L +P + ++ GS DKTV LWDLR+
Sbjct: 259 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 311
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 6/167 (3%)
Query: 96 DNKYIRYFPGHTKKVNSLCLSPIDDTFIS-GSYDKTVRLWDLRSPNCQG--IMHVSGSRP 152
D K + H KKV + L+P D F++ S D+TV++WDLR + + + P
Sbjct: 240 DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHP 299
Query: 153 I--AAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYI 210
+ A F P+G I++Y +D P T IK + +Y
Sbjct: 300 VNAACFSPDGARLLTTDQKSEIRVYSASQWD-CPLGLIPHPHRHFQHLTPIKAAWHPRYN 358
Query: 211 LISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS 257
LI F + L+T+ F N G + + P+S + S
Sbjct: 359 LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISS 405
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 90/196 (45%), Gaps = 21/196 (10%)
Query: 105 GHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRS-PNCQGIM--------HVSGSRPIA 154
GH K+ L +P ++ +S S D T+ LWD+ + P ++ H + +A
Sbjct: 183 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 242
Query: 155 AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNF--KFAAEKECDWTGIKFSADGKYILI 212
+FG + + ++D R+ + S+ AE C + F+ ++IL
Sbjct: 243 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC----LSFNPYSEFILA 298
Query: 213 STNGSIIRTFDAYNGQCLQ-TLAGFLNNKGCPLEASFTPDSKYVISGS-TDGRIHIWNAE 270
+ GS +T ++ + L+ L F ++K + ++P ++ +++ S TD R+H+W+
Sbjct: 299 T--GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356
Query: 271 K-GFKVCVLDADHPSP 285
K G + DA+ P
Sbjct: 357 KIGEEQSTEDAEDGPP 372
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 36 LISCSEDDQIVIYDCELGTNK------RTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89
L+S S+D I ++D + + +F+ V H ++ S D +
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260
Query: 90 RYLSLHDN---KYIRYFPGHTKKVNSLCLSPIDDTFIS-GSYDKTVRLWDLRS 138
+N K HT +VN L +P + ++ GS DKTV LWDLR+
Sbjct: 261 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 313
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 88/226 (38%), Gaps = 35/226 (15%)
Query: 100 IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ-GIMHVSGSRPIA-AFD 157
+R GH +V CLS SGS + D+R N Q G + S A+
Sbjct: 169 LRTMAGHQARVG--CLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226
Query: 158 PEGLIFGVGVNSDTIKLYDVRS----FDKGPFSNFKFAAEKECDWTGIKFSADGK----- 208
+GL G N + ++++D RS F K N A C W + G
Sbjct: 227 SDGLQLASGGNDNVVQIWDARSSIPKFTKTNH-NAAVKAVAWCPWQSNLLATGGGTMDKQ 285
Query: 209 -YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS--GSTDGRIH 265
+ + G+ + T DA G + +L ++P SK ++S G D +
Sbjct: 286 IHFWNAATGARVNTVDA--GSQVTSLI-------------WSPHSKEIMSTHGFPDNNLS 330
Query: 266 IWN-AEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT--NLAFW 308
IW+ + G V H + V +P ++++A + NL FW
Sbjct: 331 IWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 102/278 (36%), Gaps = 39/278 (14%)
Query: 24 ITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTH------AKQA 77
+ S+ +S DG L + + IYD E T RT+ + V + + ++
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSG 196
Query: 78 AIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLR 137
AIH VR N I GH+ +V L SG D V++WD R
Sbjct: 197 AIH-----HHDVRIA----NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247
Query: 138 S--PNCQGIMHVSGSRPIA--AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE 193
S P H + + +A + L G G I ++ + G N A
Sbjct: 248 SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT---GARVNTVDAGS 304
Query: 194 KECDWTGIKFSADGKYILISTNGSIIRTFD--AYNGQCLQTLAGFLNNKGCPLEASFTPD 251
+ T + +S K I+ ST+G +Y+ L + L ++ +PD
Sbjct: 305 QV---TSLIWSPHSKEIM-STHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD 360
Query: 252 SKYVISGSTDGRIHIWNAEKGFKVCVLDADH---PSPV 286
+ + + ++D + W V D DH P P+
Sbjct: 361 GRILSTAASDENLKFWR--------VYDGDHVKRPIPI 390
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 36 LISCSEDDQIVIYDCELG------TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89
L+S S+D + ++D G + + +F+ V H ++ S D +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 90 RYLSLHDN---KYIRYFPGHTKKVNSLCLSPIDDTFIS-GSYDKTVRLWDLRS 138
N K HT +VN L +P + ++ GS DKTV LWDLR+
Sbjct: 255 MIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 307
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 36 LISCSEDDQIVIYDCELG------TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89
L+S S+D + ++D G + + +F+ V H ++ S D +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 90 RYLSLHDN---KYIRYFPGHTKKVNSLCLSPIDDTFIS-GSYDKTVRLWDLRS 138
N K HT +VN L +P + ++ GS DKTV LWDLR+
Sbjct: 255 XIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 307
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 101/247 (40%), Gaps = 37/247 (14%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT--VFSKKYGVDLIRFT-H 73
+E+ ++T ID++ D +++C D ++ + T K T + +R+ +
Sbjct: 48 LKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 107
Query: 74 AKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRL 133
K+ A+ + +++ ++ Y ++ ++ H KK PI T +S +
Sbjct: 108 EKKFAVGSGSRVI-SICYFEQENDWWV---CKHIKK-------PIRSTVLSLDWH----- 151
Query: 134 WDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE 193
PN ++ +GS D + IF + + K PF F +
Sbjct: 152 -----PN--SVLLAAGS-----CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 199
Query: 194 KECDWT-GIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPD 251
C W G+ FSA+G + ++ S + DA + TLA ++ PL A +F +
Sbjct: 200 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA----SETLPLLAVTFITE 255
Query: 252 SKYVISG 258
S V +G
Sbjct: 256 SSLVAAG 262
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 36 LISCSEDDQIVIYDCELG------TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89
L+S S+D I ++D + +T+F+ V H ++ S D +
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252
Query: 90 RYLSLHDN---KYIRYFPGHTKKVNSLCLSPIDDTFIS-GSYDKTVRLWDLRS 138
N K HT +VN L +P + ++ GS DKTV LWDLR+
Sbjct: 253 MIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 305
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 101/247 (40%), Gaps = 37/247 (14%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT--VFSKKYGVDLIRFT-H 73
+E+ ++T +D++ D +++C D ++ + T K T + +R+ +
Sbjct: 48 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 107
Query: 74 AKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRL 133
K+ A+ + +++ ++ Y ++ ++ H KK PI T +S +
Sbjct: 108 EKKFAVGSGSRVI-SICYFEQENDWWV---CKHIKK-------PIRSTVLSLDWH----- 151
Query: 134 WDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE 193
PN ++ +GS D + IF + + K PF F +
Sbjct: 152 -----PN--SVLLAAGS-----CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 199
Query: 194 KECDWT-GIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPD 251
C W G+ FSA+G + ++ S + DA + TLA ++ PL A +F +
Sbjct: 200 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA----SETLPLLAVTFITE 255
Query: 252 SKYVISG 258
S V +G
Sbjct: 256 SSLVAAG 262
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 17/171 (9%)
Query: 24 ITSIDYSADGLLLISCS--EDDQIVI---------YDCELGTNKRTVFSKKYGVDLIRFT 72
I + ++S DG L + +DD+ VI Y T + + ++ F
Sbjct: 197 INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN 256
Query: 73 HAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVR 132
+ + AS D T+R + F GH++ + S DD IS S D +VR
Sbjct: 257 DTNKLLLSASD--DGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG-DDKVISCSMDGSVR 313
Query: 133 LWDLRSPNCQGIMHVSGSRPIAA--FDPEGLIFGVGVNSDTIKLYDVRSFD 181
LW L+ + V G PI A +G + V + +YD++ +
Sbjct: 314 LWSLKQNTLLALSIVDGV-PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 13/140 (9%)
Query: 51 ELGTNKRTVFSK--KYG----VDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFP 104
EL N+ + SK KY V + + A+ S I ++ L + +
Sbjct: 109 ELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI--CIKVWDLAQQVVLSSYR 166
Query: 105 GHTKKVNSLCLSPIDDT-FISGSYDKTVRLWDLRSPNCQGIMHVS--GSRPIA-AFDP-E 159
H +V + SP D+ F+S S D + LWD R P + S G P + A+ P +
Sbjct: 167 AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQ 226
Query: 160 GLIFGVGVNSDTIKLYDVRS 179
+F G + T+ L D +S
Sbjct: 227 SEVFVFGDENGTVSLVDTKS 246
>pdb|3KEI|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KEI|B Chain B, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KFM|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Kainate
Length = 257
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y++ N + D Y G C+ + + G + + PD KY G+ D IWN
Sbjct: 12 YVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKY---GARDADTKIWN 68
Query: 269 AEKG 272
G
Sbjct: 69 GMVG 72
>pdb|3EN3|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Kainate
pdb|3EPE|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
pdb|3EPE|B Chain B, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
Length = 257
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y++ N + D Y G C+ + + G + + PD KY G+ D IWN
Sbjct: 12 YVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKY---GARDADTKIWN 68
Query: 269 AEKG 272
G
Sbjct: 69 GMVG 72
>pdb|3FAT|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|C Chain C, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAS|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
pdb|3FAS|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
Length = 260
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y++ N + D Y G C+ + + G + + PD KY G+ D IWN
Sbjct: 14 YVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKY---GARDADTKIWN 70
Query: 269 AEKG 272
G
Sbjct: 71 GMVG 74
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 60 FSKKYGVDLIR----FTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL 115
F+K D+++ F+ QA S D +V+ L ++ + H+ +VN +
Sbjct: 133 FAKYEHDDIVKTLSVFSDGTQAV---SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAA 189
Query: 116 SPIDDT-FISGSYDKTVRLWDLRSP 139
P DT F+S D + LWD R P
Sbjct: 190 CPGKDTIFLSCGEDGRILLWDTRKP 214
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 65/170 (38%), Gaps = 17/170 (10%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP--NCQGIMHVSGSRPIAAFDPEGLI 162
GH V SL D ISGS+DKT ++W S N Q + +F
Sbjct: 102 GHQGNVCSLSFQ--DGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENK-- 157
Query: 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTF 222
F TIKL+ K FS + + DG +I S +G +I+
Sbjct: 158 FLTASADKTIKLWQNDKVIK-TFSGIHNDVVRH-----LAVVDDGHFISCSNDG-LIKLV 210
Query: 223 DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
D + G L+T G + C P+ ++S D + IW+ E G
Sbjct: 211 DXHTGDVLRTYEGHESFVYC---IKLLPNGD-IVSCGEDRTVRIWSKENG 256
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAS 82
+IT + + G LIS S+D Q+ I+ + G+N RT+ + V I + + AS
Sbjct: 141 EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSAS 200
Query: 83 TKIDDTVR 90
+D T+R
Sbjct: 201 --LDGTIR 206
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 69 IRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD 128
++F + +A I +S D ++ S+ D R GH V + + +S S D
Sbjct: 145 LKFFPSGEALISSSQ--DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD 202
Query: 129 KTVRLWD 135
T+RLW+
Sbjct: 203 GTIRLWE 209
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 16/114 (14%)
Query: 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKE----CDWTGIKFSADGKYILISTNGSI 218
F +G IK+ D SNF E + + T +KF G+ ++ S+
Sbjct: 112 FILGTTEGDIKVLD---------SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQ 162
Query: 219 IRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
++ + +G +TL G ++ + + + V+S S DG I +W G
Sbjct: 163 LKIWSVKDGSNPRTLIG---HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 213
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAS 82
+IT + + G LIS S+D Q+ I+ + G+N RT+ + V I + + AS
Sbjct: 138 EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSAS 197
Query: 83 TKIDDTVR 90
+D T+R
Sbjct: 198 --LDGTIR 203
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 69 IRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD 128
++F + +A I +S D ++ S+ D R GH V + + +S S D
Sbjct: 142 LKFFPSGEALISSSQ--DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD 199
Query: 129 KTVRLWD 135
T+RLW+
Sbjct: 200 GTIRLWE 206
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 16/114 (14%)
Query: 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKE----CDWTGIKFSADGKYILISTNGSI 218
F +G IK+ D SNF E + + T +KF G+ ++ S+
Sbjct: 109 FILGTTEGDIKVLD---------SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQ 159
Query: 219 IRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
++ + +G +TL G ++ + + + V+S S DG I +W G
Sbjct: 160 LKIWSVKDGSNPRTLIG---HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 210
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCL--SPIDDTFISGSYDKTVRLWDLRSPNCQG 143
D T + L N+ I+ H V ++ +P ++GS+DKT++ WD RS N
Sbjct: 107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM 165
Query: 144 IMHV 147
++ +
Sbjct: 166 VLQL 169
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 106 HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFD----PEGL 161
HT V +C S + S DKT ++WDL S Q I P+ P
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS--NQAIQIAQHDAPVKTIHWIKAPNYS 142
Query: 162 IFGVGVNSDTIKLYDVRS 179
G T+K +D RS
Sbjct: 143 CVMTGSWDKTLKFWDTRS 160
>pdb|1J5Q|A Chain A, The Structure And Evolution Of The Major Capsid Protein Of
A Large, Lipid-Containing, Dna Virus.
pdb|1J5Q|B Chain B, The Structure And Evolution Of The Major Capsid Protein Of
A Large, Lipid-Containing, Dna Virus.
pdb|3KK5|A Chain A, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|B Chain B, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|C Chain C, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|D Chain D, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|E Chain E, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|F Chain F, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|G Chain G, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|H Chain H, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|I Chain I, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|J Chain J, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|K Chain K, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|L Chain L, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|M Chain M, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
Length = 437
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK---KYGVD 67
Y KL+ ++ ++Y+ + + + + L T +RT F++ +Y ++
Sbjct: 170 YHEVKLYFTLASQVQGVNYNGSSAIAGAAQPTMSVWVDYIFLDTQERTRFAQLPHEYLIE 229
Query: 68 LIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRY 102
++FT ++ A A+T+ +R H KY+ +
Sbjct: 230 QLQFTGSETATPSATTQASQNIRLNFNHPTKYLAW 264
>pdb|1M3Y|A Chain A, The Structure Of Major Capsid Protein Of A Large, Lipid
Containing, Dna Virus
pdb|1M3Y|B Chain B, The Structure Of Major Capsid Protein Of A Large, Lipid
Containing, Dna Virus
pdb|1M3Y|C Chain C, The Structure Of Major Capsid Protein Of A Large, Lipid
Containing, Dna Virus
pdb|1M3Y|D Chain D, The Structure Of Major Capsid Protein Of A Large, Lipid
Containing, Dna Virus
Length = 413
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK---KYGVD 67
Y KL+ ++ ++Y+ + + + + L T +RT F++ +Y ++
Sbjct: 146 YHEVKLYFTLASQVQGVNYNGSSAIAGAAQPTMSVWVDYIFLDTQERTRFAQLPHEYLIE 205
Query: 68 LIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRY 102
++FT ++ A A+T+ +R H KY+ +
Sbjct: 206 QLQFTGSETATPSATTQASQNIRLNFNHPTKYLAW 240
>pdb|2I3V|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|C Chain C, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|D Chain D, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
Length = 259
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 14 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 70
Query: 269 AEKG 272
G
Sbjct: 71 GMVG 74
>pdb|3IJO|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJX|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|D Chain D, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IK6|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IL1|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3ILT|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILU|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3LSF|B Chain B, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|E Chain E, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|H Chain H, Piracetam Bound To The Ligand Binding Domain Of Glua2
Length = 258
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 13 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 69
Query: 269 AEKG 272
G
Sbjct: 70 GMVG 73
>pdb|2I3W|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
pdb|2I3W|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
Length = 259
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 14 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 70
Query: 269 AEKG 272
G
Sbjct: 71 GMVG 74
>pdb|2UXA|A Chain A, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|B Chain B, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|C Chain C, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED
Length = 261
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 15 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 71
Query: 269 AEKG 272
G
Sbjct: 72 GMVG 75
>pdb|3T9X|B Chain B, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|D Chain D, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|F Chain F, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 13 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 69
Query: 269 AEKG 272
G
Sbjct: 70 GMVG 73
>pdb|3H03|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|D Chain D, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H06|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|E Chain E, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|H Chain H, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|J Chain J, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|L Chain L, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|N Chain N, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|P Chain P, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3LSL|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|D Chain D, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|G Chain G, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3M3L|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|D Chain D, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|G Chain G, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3RTF|B Chain B, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|D Chain D, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|F Chain F, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|B Chain B, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|D Chain D, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|F Chain F, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|4GXS|B Chain B, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
pdb|4GXS|D Chain D, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
Length = 258
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 13 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 69
Query: 269 AEKG 272
G
Sbjct: 70 GMVG 73
>pdb|3R7X|A Chain A, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3R7X|B Chain B, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3UA8|A Chain A, Crystal Structure Analysis Of A 6-Amino Quinazolinedione
Sulfonamide Bound To Human Glur2
Length = 263
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 72
Query: 269 AEKG 272
G
Sbjct: 73 GMVG 76
>pdb|1MQD|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|3B7D|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|G Chain G, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|H Chain H, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
Length = 261
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 72
Query: 269 AEKG 272
G
Sbjct: 73 GMVG 76
>pdb|3PD8|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|C Chain C, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
Length = 261
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 15 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 71
Query: 269 AEKG 272
G
Sbjct: 72 GMVG 75
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain
Mutant (s1s2j-n754d) In Complex With Kainate At 2.1 A
Resolution
Length = 263
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 72
Query: 269 AEKG 272
G
Sbjct: 73 GMVG 76
>pdb|3PD9|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
pdb|3PD9|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
Length = 260
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 14 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 70
Query: 269 AEKG 272
G
Sbjct: 71 GMVG 74
>pdb|2XHD|A Chain A, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
pdb|2XHD|B Chain B, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
Length = 263
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 72
Query: 269 AEKG 272
G
Sbjct: 73 GMVG 76
>pdb|3O29|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O2A|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6G|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6H|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6I|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMV|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMW|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMX|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|4FAT|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 72
Query: 269 AEKG 272
G
Sbjct: 73 GMVG 76
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB8|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB9|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
pdb|1LB9|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
Length = 263
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 72
Query: 269 AEKG 272
G
Sbjct: 73 GMVG 76
>pdb|3TDJ|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TDJ|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TKD|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
pdb|3TKD|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
Length = 263
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 72
Query: 269 AEKG 272
G
Sbjct: 73 GMVG 76
>pdb|3O28|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 72
Query: 269 AEKG 272
G
Sbjct: 73 GMVG 76
>pdb|1P1W|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
pdb|1P1W|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
Length = 263
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 72
Query: 269 AEKG 272
G
Sbjct: 73 GMVG 76
>pdb|3B6W|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
Length = 263
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 72
Query: 269 AEKG 272
G
Sbjct: 73 GMVG 76
>pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Kainate At 2.0 A Resolution
pdb|1FTJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTL|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTL|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTM|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTO|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTO|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5C|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Br-Hibo At 1.65 A Resolution
pdb|1M5E|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1MM6|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM6|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM7|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1N0T|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1NNK|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.85 A Resolution.
Crystallization With Zinc Ions.
pdb|1NNP|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1NNP|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1MS7|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MXU|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXV|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXW|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXX|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXY|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXZ|A Chain A, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|B Chain B, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|C Chain C, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MY0|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY1|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY2|A Chain A, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|B Chain B, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|C Chain C, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY3|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY4|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MQG|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQG|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQI|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Fluoro-willardiine At 1.35 Angstroms
Resolution
pdb|1MQJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Willardiine At 1.65 Angstroms Resolution
pdb|1SYH|A Chain A, X-ray Structure Of The Glur2 Ligand-binding Core (s1s2j)
In Complex With (s)-cpw399 At 1.85 A Resolution.
pdb|1WVJ|A Chain A, Exploring The Glur2 Ligand-Binding Core In Complex With
The Bicyclic Ampa Analogue (S)-4-Ahcp
pdb|2AIX|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Thio-Atpa At 2.2 A Resolution.
pdb|2AL4|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL5|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2AL5|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2CMO|A Chain A, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|2P2A|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|2P2A|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|3BKI|P Chain P, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BFU|A Chain A, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|B Chain B, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|C Chain C, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|D Chain D, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFT|A Chain A, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|B Chain B, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|C Chain C, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|2CMO|B Chain B, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|3TZA|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|3TZA|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|4G8M|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
pdb|4G8M|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
Length = 263
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 72
Query: 269 AEKG 272
G
Sbjct: 73 GMVG 76
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|B Chain B, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|C Chain C, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|3H6T|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|C Chain C, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6U|A Chain A, Crystal Structure Of The Iglur2 Ligand-binding Core
(s1s2j-n754s) In Complex With Glutamate And Ns1493 At
1.85 A Resolution
pdb|3H6V|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6V|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6W|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3H6W|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3KGC|A Chain A, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3KGC|B Chain B, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3BBR|A Chain A, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|3BBR|B Chain B, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|2XX9|A Chain A, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|B Chain B, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|C Chain C, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XXH|A Chain A, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|B Chain B, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|C Chain C, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXI|A Chain A, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|B Chain B, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|C Chain C, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XX8|A Chain A, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|B Chain B, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|C Chain C, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution
Length = 263
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 72
Query: 269 AEKG 272
G
Sbjct: 73 GMVG 76
>pdb|3B6T|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686a Mutant In Complex With Quisqualate At 2.1
Resolution
pdb|3B6Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
Mutant T686a In Complex With Glutamate At 2.0 Resolution
Length = 263
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 72
Query: 269 AEKG 272
G
Sbjct: 73 GMVG 76
>pdb|1P1N|A Chain A, Glur2 Ligand Binding Core (S1s2j) Mutant L650t In Complex
With Kainate
pdb|1P1O|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
Mutant L650t In Complex With Quisqualate
pdb|1P1Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1U|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
pdb|1P1U|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
Length = 263
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 72
Query: 269 AEKG 272
G
Sbjct: 73 GMVG 76
>pdb|1M5D|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Br-hibo At 1.73 A Resolution
pdb|1M5F|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|B Chain B, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|C Chain C, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1SYI|A Chain A, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1SYI|B Chain B, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1XHY|A Chain A, X-ray Structure Of The Y702f Mutant Of The Glur2
Ligand-binding Core (s1s2j) In Complex With Kainate At
1.85 A Resolution
Length = 263
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 72
Query: 269 AEKG 272
G
Sbjct: 73 GMVG 76
>pdb|1M4X|A Chain A, Pbcv-1 Virus Capsid, Quasi-Atomic Model
pdb|1M4X|B Chain B, Pbcv-1 Virus Capsid, Quasi-Atomic Model
pdb|1M4X|C Chain C, Pbcv-1 Virus Capsid, Quasi-Atomic Model
Length = 413
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK---KYGVD 67
Y KL+ ++ ++Y+ + + + + L T +RT F++ +Y ++
Sbjct: 146 YHEVKLYFTLASQVQGVNYNGSSAIAGAAQPTMSVWVDYIFLDTQERTRFAQLPHEYLIE 205
Query: 68 LIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRY 102
++FT ++ A A+T+ +R H KY+ +
Sbjct: 206 QLQFTGSETATPSATTQAAQNIRLNFNHPTKYLAW 240
>pdb|1PZM|A Chain A, Crystal Structure Of Hgprt-Ase From Leishmania Tarentolae
In Complex With Gmp
pdb|1PZM|B Chain B, Crystal Structure Of Hgprt-Ase From Leishmania Tarentolae
In Complex With Gmp
Length = 211
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 189 KFAAEKECDWTGIKFSADGK-YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247
K A + D+ +AD Y+L GS I T D LA FL ++G P++
Sbjct: 39 KCAKKIAADYKDFHLTADNPLYLLCVLKGSFIFTAD---------LARFLADEGVPVKVE 89
Query: 248 FTPDSKYVISGSTDGRIHI 266
F S Y T G++ +
Sbjct: 90 FICASSYGSGVETSGQVRM 108
>pdb|2XX7|A Chain A, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|B Chain B, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|C Chain C, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution
Length = 291
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 45 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 101
Query: 269 AEKG 272
G
Sbjct: 102 GMVG 105
>pdb|3RN8|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
Length = 280
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 17 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 73
Query: 269 AEKG 272
G
Sbjct: 74 GMVG 77
>pdb|3DP6|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|C Chain C, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
Length = 279
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 32 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 88
Query: 269 AEKG 272
G
Sbjct: 89 GMVG 92
>pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core
(Glur2) Complexed With Kainate
pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2i)
In Complex With Kainate At 1.6 A Resolution
Length = 279
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 28 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 84
Query: 269 AEKG 272
G
Sbjct: 85 GMVG 88
>pdb|3RNN|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
Length = 292
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 29 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 85
Query: 269 AEKG 272
G
Sbjct: 86 GMVG 89
>pdb|3T93|B Chain B, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|D Chain D, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|F Chain F, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T96|B Chain B, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|D Chain D, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|F Chain F, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9H|B Chain B, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|D Chain D, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|F Chain F, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9U|A Chain A, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|B Chain B, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|C Chain C, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|A Chain A, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|B Chain B, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G D IWN
Sbjct: 13 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GCRDADTKIWN 69
Query: 269 AEKG 272
G
Sbjct: 70 GMVG 73
>pdb|2GFE|A Chain A, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|B Chain B, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|C Chain C, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
Length = 262
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDEDTKIWN 72
Query: 269 AEKG 272
G
Sbjct: 73 GMVG 76
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N + + + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 396 YVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 452
Query: 269 AEKG 272
G
Sbjct: 453 GMVG 456
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 8/70 (11%)
Query: 200 GIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS 259
G+ + +G+ I +S +G++ ++ + + L+T++G +NKG + P +ISGS
Sbjct: 303 GVVATGNGRIISLSLDGTL-NFYELGHDEVLKTISG--HNKGI-TALTVNP----LISGS 354
Query: 260 TDGRIHIWNA 269
DGRI W++
Sbjct: 355 YDGRIMEWSS 364
>pdb|4AF0|A Chain A, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 18/98 (18%)
Query: 201 IKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST 260
++ + GK ++ +NG ++ L + L N+ P AS P+SK + G+
Sbjct: 226 LRETKKGKLPIVDSNGHLV---------SLVARSDLLKNQNYPY-ASKVPESKQLYCGAA 275
Query: 261 DG-------RIHIWNAEKGFKVCVLDADHPSPVQTIQF 291
G R+ + AE G V VLD+ + V I+F
Sbjct: 276 IGTRPGDKDRLKLL-AEAGLDVVVLDSSQGNSVYQIEF 312
>pdb|1MQH|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine At 1.8 Angstroms
Resolution
Length = 263
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N + + Y G C+ A + G + + D KY G+ D IWN
Sbjct: 16 YVMMKKNHEALEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKY---GARDADTKIWN 72
Query: 269 AEKG 272
G
Sbjct: 73 GMVG 76
>pdb|4AF0|B Chain B, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 18/98 (18%)
Query: 201 IKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST 260
++ + GK ++ +NG ++ L + L N+ P AS P+SK + G+
Sbjct: 226 LRETKKGKLPIVDSNGHLV---------SLVARSDLLKNQNYPY-ASKVPESKQLYCGAA 275
Query: 261 DG-------RIHIWNAEKGFKVCVLDADHPSPVQTIQF 291
G R+ + AE G V VLD+ + V I+F
Sbjct: 276 IGTRPGDKDRLKLL-AEAGLDVVVLDSSQGNSVYQIEF 312
>pdb|3ZGE|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGE|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 990
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDL 68
N +K+ SID L+ SEDD++V YD L + +G DL
Sbjct: 29 NVEKLASIDAQLRLLVPGKVSEDDKLVEYDALLLDKFLDILQDLHGEDL 77
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex
Lacking The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex
Lacking The Arp2 Subunit
Length = 377
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCEL-GTNKRTV 59
+K A+ F ++ +T +D++ +++CS+D +Y+ GT K+T+
Sbjct: 45 WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTL 94
>pdb|2ANJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y450w) Mutant In Complex With The Partial Agonist Kainic
Acid At 2.1 A Resolution
Length = 263
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
Y+++ N ++ + Y G C+ A + G + + D K+ G+ D IWN
Sbjct: 16 YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKW---GARDADTKIWN 72
Query: 269 AEKG 272
G
Sbjct: 73 GMVG 76
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 8/68 (11%)
Query: 200 GIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS 259
G+ + +G+ I +S +G++ ++ + + L+T++G +NKG + P +ISGS
Sbjct: 303 GVVATGNGRIISLSLDGTL-NFYELGHDEVLKTISG--HNKGI-TALTVNP----LISGS 354
Query: 260 TDGRIHIW 267
DGRI W
Sbjct: 355 YDGRIXEW 362
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,653,864
Number of Sequences: 62578
Number of extensions: 461177
Number of successful extensions: 1949
Number of sequences better than 100.0: 128
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 1183
Number of HSP's gapped (non-prelim): 379
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)