Query psy16316
Match_columns 335
No_of_seqs 192 out of 2092
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 18:16:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 100.0 1.1E-46 3.6E-51 329.5 41.4 291 10-310 2-300 (304)
2 1vyh_C Platelet-activating fac 100.0 4.2E-47 1.5E-51 345.7 38.8 286 14-310 101-409 (410)
3 1got_B GT-beta; complex (GTP-b 100.0 1.7E-45 5.8E-50 326.8 41.1 289 11-309 45-340 (340)
4 4ery_A WD repeat-containing pr 100.0 8E-45 2.7E-49 318.3 43.0 295 10-311 12-311 (312)
5 3ow8_A WD repeat-containing pr 100.0 3.7E-45 1.3E-49 322.2 40.2 286 14-310 25-319 (321)
6 2pbi_B Guanine nucleotide-bind 100.0 2E-44 7E-49 321.7 43.4 289 12-309 55-354 (354)
7 3iz6_a 40S ribosomal protein R 100.0 2E-45 6.8E-50 331.3 35.8 295 11-311 56-374 (380)
8 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.4E-44 2.9E-48 316.6 38.7 296 9-311 3-334 (345)
9 3frx_A Guanine nucleotide-bind 100.0 1.6E-43 5.4E-48 311.5 39.4 290 9-310 5-315 (319)
10 1nr0_A Actin interacting prote 100.0 1.7E-43 5.6E-48 337.8 40.8 301 11-311 49-521 (611)
11 1nr0_A Actin interacting prote 100.0 1E-43 3.5E-48 339.2 37.5 294 10-311 179-610 (611)
12 4gqb_B Methylosome protein 50; 100.0 2.4E-43 8.4E-48 313.3 34.7 282 18-311 27-330 (344)
13 4g56_B MGC81050 protein; prote 100.0 9.1E-44 3.1E-48 317.9 31.8 284 17-311 38-342 (357)
14 2xzm_R RACK1; ribosome, transl 100.0 9.3E-43 3.2E-47 309.5 37.8 290 9-311 9-339 (343)
15 1erj_A Transcriptional repress 100.0 1.5E-42 5.2E-47 313.9 38.6 284 19-311 62-388 (393)
16 2hes_X YDR267CP; beta-propelle 100.0 4E-42 1.4E-46 303.9 37.6 293 8-310 1-326 (330)
17 4aow_A Guanine nucleotide-bind 100.0 2.3E-39 7.9E-44 285.9 41.1 290 9-310 26-335 (340)
18 2ymu_A WD-40 repeat protein; u 100.0 8.4E-40 2.9E-44 309.4 39.7 282 11-309 293-577 (577)
19 3ei3_B DNA damage-binding prot 100.0 1.1E-39 3.9E-44 293.5 37.8 297 8-311 60-381 (383)
20 4e54_B DNA damage-binding prot 100.0 1.3E-40 4.5E-45 305.1 31.3 302 7-311 105-429 (435)
21 3zwl_B Eukaryotic translation 100.0 5.4E-39 1.8E-43 286.2 39.8 289 11-311 22-345 (369)
22 1sq9_A Antiviral protein SKI8; 100.0 2.1E-39 7E-44 292.6 37.2 295 11-310 6-393 (397)
23 3ow8_A WD repeat-containing pr 100.0 3.2E-39 1.1E-43 284.3 36.4 248 13-270 72-320 (321)
24 3dm0_A Maltose-binding peripla 100.0 3.4E-39 1.2E-43 312.3 39.8 289 10-310 371-691 (694)
25 1vyh_C Platelet-activating fac 100.0 7.2E-40 2.5E-44 298.0 32.6 249 11-269 140-409 (410)
26 3dw8_B Serine/threonine-protei 100.0 2.4E-39 8.1E-44 296.7 35.3 296 10-310 11-444 (447)
27 1got_B GT-beta; complex (GTP-b 100.0 5.3E-39 1.8E-43 285.0 35.3 249 11-268 87-340 (340)
28 2pm7_B Protein transport prote 100.0 5.6E-39 1.9E-43 279.6 33.2 255 15-270 3-284 (297)
29 3i2n_A WD repeat-containing pr 100.0 3.1E-39 1E-43 286.9 31.0 292 13-311 10-352 (357)
30 1gxr_A ESG1, transducin-like e 100.0 8.9E-38 3E-42 275.0 38.7 279 17-310 47-335 (337)
31 4h5i_A Guanine nucleotide-exch 100.0 1.2E-38 4.2E-43 285.5 33.5 284 21-310 14-341 (365)
32 3odt_A Protein DOA1; ubiquitin 100.0 4.1E-38 1.4E-42 274.5 35.9 287 9-314 6-298 (313)
33 2ymu_A WD-40 repeat protein; u 100.0 1.4E-37 4.9E-42 294.1 40.8 284 11-311 252-538 (577)
34 3k26_A Polycomb protein EED; W 100.0 3.6E-38 1.2E-42 280.7 34.2 289 16-310 13-364 (366)
35 1k8k_C P40, ARP2/3 complex 41 100.0 3.1E-38 1.1E-42 282.1 33.5 292 15-312 2-361 (372)
36 4gqb_B Methylosome protein 50; 100.0 4.8E-38 1.6E-42 279.3 33.2 244 17-272 78-332 (344)
37 3frx_A Guanine nucleotide-bind 100.0 7E-38 2.4E-42 275.4 33.4 249 13-271 57-317 (319)
38 3gre_A Serine/threonine-protei 100.0 3.8E-38 1.3E-42 288.4 30.4 292 11-309 52-437 (437)
39 3mmy_A MRNA export factor; mRN 100.0 1.4E-37 4.7E-42 276.9 33.1 287 9-304 27-336 (368)
40 3vl1_A 26S proteasome regulato 100.0 6E-38 2E-42 285.3 31.0 285 16-311 93-418 (420)
41 3bg1_A Protein SEC13 homolog; 100.0 1.2E-38 4E-43 280.0 25.4 251 15-270 7-292 (316)
42 3mkq_A Coatomer beta'-subunit; 100.0 3.2E-37 1.1E-41 303.1 38.5 291 10-310 2-300 (814)
43 1yfq_A Cell cycle arrest prote 100.0 7.4E-38 2.5E-42 276.7 30.6 282 14-305 4-314 (342)
44 3v7d_B Cell division control p 100.0 1.2E-36 4E-41 280.6 38.4 282 13-311 113-420 (464)
45 2pbi_B Guanine nucleotide-bind 100.0 7.5E-37 2.6E-41 272.7 35.7 250 11-268 96-354 (354)
46 1r5m_A SIR4-interacting protei 100.0 6.1E-37 2.1E-41 278.0 35.3 281 18-311 42-424 (425)
47 2pm9_A Protein WEB1, protein t 100.0 2E-38 6.8E-43 287.7 24.9 285 19-311 65-413 (416)
48 2ynn_A Coatomer subunit beta'; 100.0 9.5E-37 3.3E-41 266.3 34.3 250 11-271 45-302 (304)
49 3dwl_C Actin-related protein 2 100.0 2.3E-38 7.7E-43 284.1 24.2 251 14-270 4-280 (377)
50 3vl1_A 26S proteasome regulato 100.0 1.6E-37 5.3E-42 282.5 29.6 282 23-312 58-365 (420)
51 2j04_B YDR362CP, TAU91; beta p 100.0 5.6E-38 1.9E-42 292.8 26.9 287 20-314 132-519 (524)
52 3iz6_a 40S ribosomal protein R 100.0 2.5E-37 8.6E-42 278.4 29.8 260 11-273 98-377 (380)
53 4ery_A WD repeat-containing pr 100.0 5.7E-36 2E-40 261.9 35.7 253 11-270 55-311 (312)
54 2pm9_A Protein WEB1, protein t 100.0 2.2E-37 7.4E-42 280.9 27.2 285 21-312 12-337 (416)
55 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.5E-36 1.2E-40 267.5 34.1 258 17-276 57-340 (345)
56 3jrp_A Fusion protein of prote 100.0 1.4E-36 4.9E-41 271.6 31.6 260 12-272 2-288 (379)
57 4g56_B MGC81050 protein; prote 100.0 7.2E-37 2.5E-41 273.2 29.3 247 14-272 87-344 (357)
58 2xzm_R RACK1; ribosome, transl 100.0 3.3E-36 1.1E-40 267.3 33.4 251 13-272 68-341 (343)
59 2hes_X YDR267CP; beta-propelle 100.0 2.8E-36 9.6E-41 266.4 32.7 255 12-271 47-328 (330)
60 3f3f_A Nucleoporin SEH1; struc 100.0 5.1E-36 1.8E-40 264.2 33.3 260 14-276 4-342 (351)
61 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-35 4.1E-40 304.4 40.0 289 15-311 609-912 (1249)
62 3v7d_B Cell division control p 100.0 2.6E-35 8.8E-40 271.6 37.5 287 10-312 151-463 (464)
63 1pgu_A Actin interacting prote 100.0 2.1E-35 7.3E-40 280.8 38.0 296 12-312 54-572 (615)
64 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-35 4.8E-40 303.9 39.3 293 10-311 646-1033(1249)
65 4a11_B DNA excision repair pro 100.0 4.7E-35 1.6E-39 264.3 37.8 300 12-315 34-368 (408)
66 1erj_A Transcriptional repress 100.0 3E-35 1E-39 266.0 34.9 243 22-270 124-388 (393)
67 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.8E-35 2E-39 268.1 36.2 282 10-310 148-440 (445)
68 4gga_A P55CDC, cell division c 100.0 1.3E-34 4.4E-39 264.1 37.6 276 23-310 107-393 (420)
69 2oaj_A Protein SNI1; WD40 repe 100.0 4.1E-35 1.4E-39 290.4 37.1 294 12-312 90-661 (902)
70 4aez_A CDC20, WD repeat-contai 100.0 3.2E-35 1.1E-39 266.4 33.1 281 19-314 89-382 (401)
71 1gxr_A ESG1, transducin-like e 100.0 1.4E-34 4.8E-39 254.6 33.6 278 20-311 8-295 (337)
72 4ggc_A P55CDC, cell division c 100.0 8.7E-34 3E-38 247.8 36.6 276 23-310 27-313 (318)
73 1pgu_A Actin interacting prote 100.0 3.2E-34 1.1E-38 272.6 36.6 289 9-311 191-613 (615)
74 1p22_A F-BOX/WD-repeat protein 100.0 2.9E-34 9.9E-39 262.9 34.0 272 18-312 130-414 (435)
75 2pm7_B Protein transport prote 100.0 4.9E-34 1.7E-38 248.3 32.9 246 59-312 5-285 (297)
76 3dm0_A Maltose-binding peripla 100.0 2.6E-34 9E-39 278.1 34.5 248 14-270 423-692 (694)
77 4aez_A CDC20, WD repeat-contai 100.0 6.3E-34 2.1E-38 257.9 34.3 255 13-278 125-387 (401)
78 3vu4_A KMHSV2; beta-propeller 100.0 8.6E-34 2.9E-38 253.0 34.5 288 10-311 8-335 (355)
79 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.1E-34 3.1E-38 260.2 35.5 278 10-311 107-390 (445)
80 2aq5_A Coronin-1A; WD40 repeat 100.0 1.2E-34 4.1E-39 262.6 28.6 284 23-312 36-342 (402)
81 3i2n_A WD repeat-containing pr 100.0 2.6E-34 8.9E-39 255.0 29.1 256 18-273 62-355 (357)
82 1sq9_A Antiviral protein SKI8; 100.0 3.4E-34 1.2E-38 258.4 29.0 258 11-272 52-396 (397)
83 3k26_A Polycomb protein EED; W 100.0 1.4E-34 4.6E-39 257.5 25.9 246 20-270 68-365 (366)
84 3lrv_A PRE-mRNA-splicing facto 100.0 1.4E-34 4.9E-39 256.7 25.1 266 28-309 43-330 (343)
85 2oaj_A Protein SNI1; WD40 repe 100.0 5.5E-34 1.9E-38 282.4 31.9 207 104-311 432-731 (902)
86 3bg1_A Protein SEC13 homolog; 100.0 1.2E-34 4.1E-39 254.4 24.1 245 59-311 9-292 (316)
87 4gga_A P55CDC, cell division c 100.0 3.3E-33 1.1E-37 254.7 34.1 249 12-273 136-397 (420)
88 3jro_A Fusion protein of prote 100.0 1.9E-34 6.4E-39 281.4 26.9 258 14-272 2-286 (753)
89 4aow_A Guanine nucleotide-bind 100.0 7E-33 2.4E-37 244.3 34.0 253 13-274 78-340 (340)
90 3mkq_A Coatomer beta'-subunit; 100.0 5.1E-33 1.7E-37 273.1 36.3 290 10-310 44-384 (814)
91 4h5i_A Guanine nucleotide-exch 100.0 5.2E-34 1.8E-38 255.4 26.1 251 16-272 68-344 (365)
92 3ei3_B DNA damage-binding prot 100.0 4.8E-33 1.6E-37 250.2 31.6 244 18-271 115-382 (383)
93 4ggc_A P55CDC, cell division c 100.0 1.8E-32 6.1E-37 239.5 32.7 248 11-271 55-315 (318)
94 2j04_B YDR362CP, TAU91; beta p 100.0 1.2E-33 4E-38 263.7 26.4 248 15-270 201-516 (524)
95 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.3E-32 1.1E-36 250.3 35.2 283 22-313 5-392 (450)
96 2j04_A TAU60, YPL007P, hypothe 100.0 1.8E-33 6.3E-38 258.2 26.4 265 19-311 13-296 (588)
97 1r5m_A SIR4-interacting protei 100.0 8.7E-33 3E-37 250.6 29.9 250 11-270 139-424 (425)
98 2aq5_A Coronin-1A; WD40 repeat 100.0 3.5E-33 1.2E-37 252.9 26.5 255 13-274 73-345 (402)
99 3zwl_B Eukaryotic translation 100.0 9.7E-32 3.3E-36 239.2 35.4 251 10-272 63-347 (369)
100 4e54_B DNA damage-binding prot 100.0 1.4E-33 4.8E-38 258.4 22.9 251 15-273 158-432 (435)
101 4a11_B DNA excision repair pro 100.0 4.6E-32 1.6E-36 244.7 31.8 285 19-311 97-404 (408)
102 3jrp_A Fusion protein of prote 100.0 9E-32 3.1E-36 240.4 30.0 252 55-311 3-286 (379)
103 1k8k_C P40, ARP2/3 complex 41 100.0 1.5E-31 5.2E-36 238.7 31.1 254 12-273 43-363 (372)
104 3gre_A Serine/threonine-protei 100.0 5.5E-32 1.9E-36 247.5 28.0 247 19-268 109-437 (437)
105 3dwl_C Actin-related protein 2 100.0 4.7E-33 1.6E-37 249.5 19.9 241 62-310 10-279 (377)
106 3bws_A Protein LP49; two-domai 100.0 5.4E-31 1.8E-35 240.4 32.9 285 12-311 114-431 (433)
107 1p22_A F-BOX/WD-repeat protein 100.0 1.3E-31 4.5E-36 245.2 27.8 260 10-293 162-434 (435)
108 3odt_A Protein DOA1; ubiquitin 100.0 1.8E-31 6E-36 232.5 27.0 246 11-275 49-300 (313)
109 3dw8_B Serine/threonine-protei 100.0 4.8E-31 1.6E-35 241.5 30.9 253 10-269 70-444 (447)
110 2xyi_A Probable histone-bindin 100.0 3.9E-31 1.3E-35 241.8 29.4 252 15-271 122-410 (430)
111 4gq1_A NUP37; propeller, trans 100.0 2.7E-31 9.4E-36 240.1 27.9 287 23-310 17-387 (393)
112 3f3f_A Nucleoporin SEH1; struc 100.0 1.7E-30 5.9E-35 228.7 31.5 248 59-312 7-337 (351)
113 2xyi_A Probable histone-bindin 100.0 5.5E-30 1.9E-34 234.2 32.7 292 23-322 47-420 (430)
114 1l0q_A Surface layer protein; 100.0 4E-29 1.4E-33 225.0 36.5 255 11-279 22-283 (391)
115 2w18_A PALB2, fancn, partner a 100.0 1.5E-30 5.1E-35 225.3 23.6 181 83-269 153-355 (356)
116 4gq1_A NUP37; propeller, trans 100.0 1.7E-30 5.9E-35 234.8 22.4 246 19-269 87-387 (393)
117 2j04_A TAU60, YPL007P, hypothe 100.0 3.2E-31 1.1E-35 243.4 17.3 244 19-302 83-349 (588)
118 1l0q_A Surface layer protein; 100.0 2.9E-28 9.9E-33 219.3 35.7 263 34-311 3-274 (391)
119 1yfq_A Cell cycle arrest prote 100.0 2.1E-29 7.3E-34 222.3 26.6 244 14-268 49-321 (342)
120 3mmy_A MRNA export factor; mRN 100.0 3.5E-29 1.2E-33 222.5 25.3 248 15-269 80-344 (368)
121 3jro_A Fusion protein of prote 100.0 1.9E-29 6.5E-34 246.0 25.7 247 58-312 4-285 (753)
122 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.8E-28 6E-33 225.4 30.2 246 16-270 97-390 (450)
123 2w18_A PALB2, fancn, partner a 100.0 1.3E-27 4.3E-32 207.0 32.1 292 10-310 24-355 (356)
124 3bws_A Protein LP49; two-domai 100.0 2.9E-27 1E-31 215.6 32.0 243 16-270 164-431 (433)
125 3lrv_A PRE-mRNA-splicing facto 100.0 4.3E-28 1.5E-32 215.0 24.5 223 76-310 47-290 (343)
126 3vu4_A KMHSV2; beta-propeller 100.0 1.2E-26 4E-31 206.8 30.7 245 47-311 3-270 (355)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 5.7E-27 2E-31 213.2 27.7 270 20-303 61-373 (415)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 9.2E-26 3.2E-30 205.2 27.2 267 15-296 111-410 (415)
129 2ecf_A Dipeptidyl peptidase IV 99.9 3.8E-25 1.3E-29 215.2 31.4 282 21-312 36-413 (741)
130 1nir_A Nitrite reductase; hemo 99.9 5.3E-24 1.8E-28 199.8 36.2 291 10-310 168-512 (543)
131 3u4y_A Uncharacterized protein 99.9 3.1E-24 1E-28 188.6 32.0 276 28-311 4-303 (331)
132 1nir_A Nitrite reductase; hemo 99.9 3.5E-24 1.2E-28 201.0 34.3 274 28-311 144-457 (543)
133 3vgz_A Uncharacterized protein 99.9 4.1E-23 1.4E-27 182.8 35.6 272 20-302 39-332 (353)
134 1ri6_A Putative isomerase YBHE 99.9 1.7E-23 5.9E-28 184.2 31.3 277 33-315 5-311 (343)
135 2ojh_A Uncharacterized protein 99.9 8.1E-24 2.8E-28 181.9 25.1 254 38-303 17-291 (297)
136 1xfd_A DIP, dipeptidyl aminope 99.9 3E-24 1E-28 208.3 24.1 286 23-313 18-394 (723)
137 1ri6_A Putative isomerase YBHE 99.9 2.3E-22 7.9E-27 176.9 32.0 268 19-295 35-334 (343)
138 3u4y_A Uncharacterized protein 99.9 2.5E-21 8.6E-26 170.0 34.6 256 11-273 30-306 (331)
139 2z3z_A Dipeptidyl aminopeptida 99.9 2.7E-22 9.2E-27 194.2 30.3 275 22-310 82-433 (706)
140 1pby_B Quinohemoprotein amine 99.9 2.6E-22 8.9E-27 176.2 27.2 262 34-310 2-308 (337)
141 2z3z_A Dipeptidyl aminopeptida 99.9 2.3E-22 7.8E-27 194.7 29.2 277 24-314 28-391 (706)
142 3o4h_A Acylamino-acid-releasin 99.9 1.3E-22 4.4E-27 192.3 24.8 267 21-311 21-312 (582)
143 3hfq_A Uncharacterized protein 99.9 7.7E-21 2.6E-25 168.2 34.2 272 40-315 13-320 (347)
144 3scy_A Hypothetical bacterial 99.9 3.6E-21 1.2E-25 171.4 32.2 268 20-292 48-360 (361)
145 2ecf_A Dipeptidyl peptidase IV 99.9 4.2E-22 1.4E-26 193.8 28.2 267 23-302 110-443 (741)
146 1xfd_A DIP, dipeptidyl aminope 99.9 3.2E-22 1.1E-26 194.1 26.9 281 12-301 48-427 (723)
147 1k32_A Tricorn protease; prote 99.9 6.5E-22 2.2E-26 199.5 29.0 270 15-303 197-491 (1045)
148 2ojh_A Uncharacterized protein 99.9 1.1E-21 3.8E-26 168.4 25.1 240 15-262 35-293 (297)
149 3hfq_A Uncharacterized protein 99.9 1.4E-20 4.8E-25 166.5 31.5 255 18-275 36-323 (347)
150 1k32_A Tricorn protease; prote 99.9 1.7E-21 5.8E-26 196.5 28.9 275 20-311 294-636 (1045)
151 1pby_B Quinohemoprotein amine 99.9 4.7E-21 1.6E-25 168.1 27.0 257 11-280 21-319 (337)
152 1jmx_B Amine dehydrogenase; ox 99.9 9.2E-21 3.2E-25 167.2 27.6 243 26-280 4-334 (349)
153 3pe7_A Oligogalacturonate lyas 99.9 7E-21 2.4E-25 170.8 25.0 294 12-314 21-384 (388)
154 3scy_A Hypothetical bacterial 99.9 4.4E-19 1.5E-23 157.8 36.2 281 32-316 12-341 (361)
155 1jof_A Carboxy-CIS,CIS-muconat 99.9 3.2E-19 1.1E-23 159.2 31.1 252 20-272 38-342 (365)
156 3vgz_A Uncharacterized protein 99.9 2.3E-19 7.7E-24 158.6 29.6 240 11-262 79-335 (353)
157 1z68_A Fibroblast activation p 99.9 2.9E-20 9.9E-25 180.3 21.0 279 26-312 20-391 (719)
158 2oit_A Nucleoporin 214KDA; NH2 99.8 1.7E-19 5.7E-24 164.8 22.7 204 20-227 35-279 (434)
159 2oiz_A Aromatic amine dehydrog 99.8 3.8E-18 1.3E-22 152.1 30.8 276 10-296 40-360 (361)
160 2oit_A Nucleoporin 214KDA; NH2 99.8 6.9E-20 2.4E-24 167.3 19.5 202 107-313 36-279 (434)
161 4a5s_A Dipeptidyl peptidase 4 99.8 1.4E-19 4.8E-24 176.2 20.5 263 23-301 18-337 (740)
162 3azo_A Aminopeptidase; POP fam 99.8 5.3E-18 1.8E-22 162.9 30.0 293 15-312 17-367 (662)
163 1jmx_B Amine dehydrogenase; ox 99.8 6.7E-18 2.3E-22 148.8 27.7 223 77-310 11-323 (349)
164 3c5m_A Oligogalacturonate lyas 99.8 1.2E-18 4E-23 156.4 21.2 280 24-317 38-387 (396)
165 3fvz_A Peptidyl-glycine alpha- 99.8 4.5E-17 1.6E-21 143.2 28.4 245 20-270 22-321 (329)
166 1q7f_A NHL, brain tumor CG1071 99.8 2.1E-16 7.1E-21 135.8 31.3 244 18-271 26-280 (286)
167 3o4h_A Acylamino-acid-releasin 99.8 4.3E-18 1.5E-22 161.2 22.1 234 16-270 58-314 (582)
168 1z68_A Fibroblast activation p 99.8 7.5E-19 2.5E-23 170.4 15.7 238 68-312 20-344 (719)
169 1jof_A Carboxy-CIS,CIS-muconat 99.8 2E-16 6.7E-21 141.1 30.1 269 36-312 5-341 (365)
170 2dg1_A DRP35, lactonase; beta 99.8 2.9E-16 9.9E-21 137.9 26.5 268 22-301 6-297 (333)
171 3pe7_A Oligogalacturonate lyas 99.8 3.4E-17 1.2E-21 146.7 18.8 256 12-269 71-380 (388)
172 2oiz_A Aromatic amine dehydrog 99.7 1.9E-15 6.6E-20 134.5 25.2 272 31-310 13-332 (361)
173 2gop_A Trilobed protease; beta 99.7 7.6E-15 2.6E-19 129.4 28.8 258 22-311 15-330 (347)
174 2dg1_A DRP35, lactonase; beta 99.7 6.1E-14 2.1E-18 123.0 34.3 245 14-262 37-301 (333)
175 2z2n_A Virginiamycin B lyase; 99.7 7.3E-13 2.5E-17 113.8 39.3 277 17-308 10-291 (299)
176 3dsm_A Uncharacterized protein 99.7 1.4E-14 4.8E-19 127.2 27.5 256 40-311 14-301 (328)
177 3e5z_A Putative gluconolactona 99.7 2.6E-14 8.8E-19 123.4 28.8 246 12-272 18-287 (296)
178 3fvz_A Peptidyl-glycine alpha- 99.7 1.5E-14 5E-19 127.1 27.6 222 87-312 69-322 (329)
179 1q7f_A NHL, brain tumor CG1071 99.7 7.4E-14 2.5E-18 119.8 31.2 235 65-310 31-278 (286)
180 3e5z_A Putative gluconolactona 99.7 7.1E-14 2.4E-18 120.6 31.0 233 62-313 26-285 (296)
181 2xdw_A Prolyl endopeptidase; a 99.7 2.1E-14 7.2E-19 139.1 29.7 250 19-273 122-416 (710)
182 4a5s_A Dipeptidyl peptidase 4 99.7 1.1E-14 3.6E-19 141.8 27.2 278 14-301 49-433 (740)
183 1rwi_B Serine/threonine-protei 99.7 6.7E-14 2.3E-18 118.8 27.3 239 23-272 25-265 (270)
184 2bkl_A Prolyl endopeptidase; m 99.7 1.3E-14 4.4E-19 140.2 25.7 248 19-274 118-400 (695)
185 3dsm_A Uncharacterized protein 99.7 1.3E-13 4.3E-18 121.1 28.1 245 22-279 44-309 (328)
186 3c5m_A Oligogalacturonate lyas 99.7 2.1E-15 7E-20 135.2 17.0 240 24-273 83-386 (396)
187 3azo_A Aminopeptidase; POP fam 99.7 2.9E-14 9.8E-19 136.9 25.1 286 15-310 61-409 (662)
188 2qc5_A Streptogramin B lactona 99.7 7.6E-12 2.6E-16 107.4 37.7 276 19-311 17-297 (300)
189 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.2E-12 4.1E-17 113.5 30.1 248 17-271 13-299 (314)
190 3no2_A Uncharacterized protein 99.6 2.4E-12 8.2E-17 110.1 30.0 216 31-259 3-231 (276)
191 1rwi_B Serine/threonine-protei 99.6 9.2E-13 3.2E-17 111.7 26.8 238 65-314 25-266 (270)
192 2xdw_A Prolyl endopeptidase; a 99.6 2.2E-12 7.6E-17 124.9 32.4 260 31-299 81-395 (710)
193 3no2_A Uncharacterized protein 99.6 7.9E-13 2.7E-17 113.1 25.5 214 78-302 6-231 (276)
194 2gop_A Trilobed protease; beta 99.6 9.2E-13 3.1E-17 116.0 25.4 225 22-270 59-330 (347)
195 1qks_A Cytochrome CD1 nitrite 99.6 3E-11 1E-15 113.3 36.7 283 11-301 187-520 (567)
196 1yr2_A Prolyl oligopeptidase; 99.6 7.3E-13 2.5E-17 128.9 26.7 247 19-274 160-444 (741)
197 2mad_H Methylamine dehydrogena 99.6 3.3E-11 1.1E-15 107.5 34.5 255 11-277 57-356 (373)
198 1qks_A Cytochrome CD1 nitrite 99.6 1.7E-11 5.9E-16 114.9 34.1 272 30-311 164-476 (567)
199 3hrp_A Uncharacterized protein 99.6 1.4E-11 4.7E-16 111.4 30.3 241 22-269 131-408 (409)
200 3sjl_D Methylamine dehydrogena 99.5 1.2E-11 4E-16 109.7 28.2 271 10-294 68-384 (386)
201 2bkl_A Prolyl endopeptidase; m 99.5 2.6E-12 9E-17 124.1 25.8 257 30-299 76-378 (695)
202 2mad_H Methylamine dehydrogena 99.5 1.1E-10 3.8E-15 104.1 34.0 278 28-316 27-352 (373)
203 2qe8_A Uncharacterized protein 99.5 1.1E-12 3.6E-17 115.9 20.7 269 10-303 8-310 (343)
204 3g4e_A Regucalcin; six bladed 99.5 2.3E-10 8E-15 98.6 30.7 235 15-259 6-260 (297)
205 3c75_H MADH, methylamine dehyd 99.5 4.8E-11 1.6E-15 107.5 26.9 259 10-278 108-409 (426)
206 1yr2_A Prolyl oligopeptidase; 99.5 5.3E-11 1.8E-15 115.8 28.9 261 30-299 115-422 (741)
207 3sjl_D Methylamine dehydrogena 99.5 3.7E-11 1.3E-15 106.5 25.2 274 27-310 38-361 (386)
208 2z2n_A Virginiamycin B lyase; 99.4 1.7E-09 5.8E-14 92.5 33.1 237 20-272 55-296 (299)
209 3iuj_A Prolyl endopeptidase; h 99.4 1.2E-10 4.2E-15 112.3 28.2 248 18-275 125-409 (693)
210 3dr2_A Exported gluconolactona 99.4 4.6E-10 1.6E-14 97.2 28.1 237 15-268 38-303 (305)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.9E-10 6.4E-15 99.6 25.7 234 65-310 19-297 (314)
212 2ghs_A AGR_C_1268P; regucalcin 99.4 1.6E-09 5.4E-14 94.8 31.3 238 11-260 38-291 (326)
213 3hrp_A Uncharacterized protein 99.4 5.2E-10 1.8E-14 101.0 28.5 233 66-308 133-404 (409)
214 3g4e_A Regucalcin; six bladed 99.4 1.5E-09 5.1E-14 93.5 29.4 222 67-299 16-257 (297)
215 1xip_A Nucleoporin NUP159; bet 99.4 1.7E-11 5.7E-16 109.1 16.5 171 109-300 39-230 (388)
216 3c75_H MADH, methylamine dehyd 99.4 3.3E-10 1.1E-14 102.0 24.3 271 31-310 82-400 (426)
217 1mda_H Methylamine dehydrogena 99.3 3.9E-10 1.3E-14 99.9 23.7 247 35-293 34-366 (368)
218 2qc5_A Streptogramin B lactona 99.3 1.7E-08 5.9E-13 86.2 33.3 232 65-310 21-258 (300)
219 3dr2_A Exported gluconolactona 99.3 4.8E-09 1.7E-13 90.7 28.9 227 59-302 40-295 (305)
220 1yiq_A Quinohemoprotein alcoho 99.3 3.3E-09 1.1E-13 102.0 27.0 260 32-299 120-533 (689)
221 2ghs_A AGR_C_1268P; regucalcin 99.3 1.7E-08 5.7E-13 88.2 28.9 221 67-300 52-288 (326)
222 1kb0_A Quinohemoprotein alcoho 99.3 2.8E-09 9.5E-14 102.4 25.9 260 32-299 127-535 (677)
223 1xip_A Nucleoporin NUP159; bet 99.2 1E-10 3.4E-15 104.0 14.3 176 23-212 39-230 (388)
224 2qe8_A Uncharacterized protein 99.2 6.7E-10 2.3E-14 97.9 19.1 234 19-268 64-318 (343)
225 2ece_A 462AA long hypothetical 99.2 2.6E-08 8.8E-13 89.2 26.1 225 31-259 93-399 (462)
226 3iuj_A Prolyl endopeptidase; h 99.1 3.3E-08 1.1E-12 95.4 26.1 224 64-301 129-388 (693)
227 1npe_A Nidogen, entactin; glyc 99.1 1.3E-06 4.4E-11 73.7 31.3 251 34-296 2-263 (267)
228 1fwx_A Nitrous oxide reductase 99.0 4.3E-08 1.5E-12 90.7 22.1 220 79-303 104-407 (595)
229 2hz6_A Endoplasmic reticulum t 99.0 2.7E-10 9.2E-15 101.5 7.0 188 32-233 8-199 (369)
230 2hz6_A Endoplasmic reticulum t 99.0 3.7E-10 1.3E-14 100.6 7.1 199 80-297 12-217 (369)
231 2ece_A 462AA long hypothetical 99.0 3.5E-07 1.2E-11 81.9 25.9 223 76-302 95-399 (462)
232 3q7m_A Lipoprotein YFGL, BAMB; 99.0 4.6E-07 1.6E-11 80.5 27.0 230 32-280 102-346 (376)
233 1kb0_A Quinohemoprotein alcoho 99.0 5.2E-08 1.8E-12 93.5 22.1 267 33-308 77-503 (677)
234 2fp8_A Strictosidine synthase; 99.0 1.2E-06 4.3E-11 76.0 29.1 239 22-270 19-312 (322)
235 2iwa_A Glutamine cyclotransfer 99.0 3.4E-07 1.2E-11 76.9 23.4 213 10-271 8-237 (266)
236 1yiq_A Quinohemoprotein alcoho 99.0 1.9E-07 6.6E-12 89.8 24.2 264 33-304 70-495 (689)
237 2iwa_A Glutamine cyclotransfer 99.0 5E-07 1.7E-11 75.8 23.6 206 99-314 11-237 (266)
238 1mda_H Methylamine dehydrogena 99.0 1.5E-07 5.2E-12 83.2 21.2 213 88-310 47-344 (368)
239 3q7m_A Lipoprotein YFGL, BAMB; 98.9 1.4E-06 4.7E-11 77.3 27.5 230 32-279 52-304 (376)
240 3nol_A Glutamine cyclotransfer 98.9 5.2E-07 1.8E-11 75.0 21.3 194 99-303 33-244 (262)
241 3nol_A Glutamine cyclotransfer 98.9 5.9E-07 2E-11 74.7 21.3 195 10-215 30-244 (262)
242 1k3i_A Galactose oxidase precu 98.9 5.5E-07 1.9E-11 86.2 23.7 285 26-313 190-550 (656)
243 3hxj_A Pyrrolo-quinoline quino 98.9 4.6E-07 1.6E-11 78.6 21.2 262 19-308 57-320 (330)
244 1kv9_A Type II quinohemoprotei 98.9 2.1E-06 7E-11 82.4 27.1 262 33-302 117-520 (668)
245 3nok_A Glutaminyl cyclase; bet 98.8 1.1E-06 3.9E-11 73.0 21.4 191 98-301 44-253 (268)
246 2ad6_A Methanol dehydrogenase 98.8 6.7E-06 2.3E-10 77.3 28.3 260 33-301 115-524 (571)
247 3nok_A Glutaminyl cyclase; bet 98.8 1.5E-06 5E-11 72.4 20.4 194 10-214 42-253 (268)
248 1npe_A Nidogen, entactin; glyc 98.8 1.4E-05 4.8E-10 67.2 26.9 222 21-253 35-263 (267)
249 1fwx_A Nitrous oxide reductase 98.8 9.5E-07 3.2E-11 81.8 20.2 241 31-273 99-433 (595)
250 3mbr_X Glutamine cyclotransfer 98.7 7E-06 2.4E-10 67.6 22.6 193 99-303 11-223 (243)
251 3mbr_X Glutamine cyclotransfer 98.7 7.9E-06 2.7E-10 67.3 22.9 194 10-214 8-222 (243)
252 2p4o_A Hypothetical protein; p 98.7 7.4E-05 2.5E-09 64.2 29.9 241 11-261 22-278 (306)
253 1w6s_A Methanol dehydrogenase 98.7 2.1E-05 7.2E-10 74.1 27.6 257 36-301 124-534 (599)
254 1flg_A Protein (quinoprotein e 98.7 3.8E-05 1.3E-09 72.3 29.2 264 33-302 117-548 (582)
255 4a2l_A BT_4663, two-component 98.6 0.00047 1.6E-08 67.4 36.5 277 21-310 214-524 (795)
256 3hxj_A Pyrrolo-quinoline quino 98.6 3E-05 1E-09 67.0 23.8 216 33-270 107-323 (330)
257 3qqz_A Putative uncharacterize 98.6 9.2E-05 3.2E-09 61.7 25.1 206 102-310 21-249 (255)
258 4hw6_A Hypothetical protein, I 98.6 6.8E-05 2.3E-09 67.9 26.3 244 22-270 139-432 (433)
259 3v64_C Agrin; beta propeller, 98.5 0.00038 1.3E-08 61.1 30.7 246 20-278 32-282 (349)
260 1kv9_A Type II quinohemoprotei 98.5 5.7E-06 2E-10 79.3 19.0 192 33-231 66-338 (668)
261 3v65_B Low-density lipoprotein 98.5 0.00046 1.6E-08 61.4 29.6 242 24-278 79-325 (386)
262 3tc9_A Hypothetical hydrolase; 98.5 0.00012 4.2E-09 66.1 24.9 243 23-270 138-429 (430)
263 2fp8_A Strictosidine synthase; 98.4 0.00013 4.5E-09 63.0 23.9 229 66-309 21-310 (322)
264 2p4o_A Hypothetical protein; p 98.4 0.00064 2.2E-08 58.3 27.9 222 66-300 34-274 (306)
265 2ad6_A Methanol dehydrogenase 98.4 0.00012 4.1E-09 68.7 24.2 193 33-233 62-342 (571)
266 4a2l_A BT_4663, two-component 98.4 0.0024 8.2E-08 62.4 37.7 275 21-312 356-659 (795)
267 3v9f_A Two-component system se 98.3 0.0028 9.5E-08 61.8 32.8 276 22-310 163-476 (781)
268 3v9f_A Two-component system se 98.3 0.0015 5.2E-08 63.6 30.6 277 20-310 311-609 (781)
269 4hw6_A Hypothetical protein, I 98.3 0.0018 6.1E-08 58.5 29.5 239 66-310 141-429 (433)
270 3tc9_A Hypothetical hydrolase; 98.3 0.0023 7.9E-08 57.8 28.5 234 66-308 139-424 (430)
271 1k3i_A Galactose oxidase precu 98.3 0.00017 5.9E-09 68.9 22.2 230 24-260 245-530 (656)
272 1w6s_A Methanol dehydrogenase 98.2 0.0011 3.9E-08 62.3 26.8 197 33-233 62-349 (599)
273 3p5b_L Low density lipoprotein 98.2 0.0026 8.7E-08 56.9 29.8 228 42-278 91-327 (400)
274 1ijq_A LDL receptor, low-densi 98.2 0.0024 8.3E-08 55.0 31.0 227 43-278 10-245 (316)
275 2xe4_A Oligopeptidase B; hydro 98.1 0.0012 4.3E-08 64.0 24.9 115 23-139 175-305 (751)
276 3ei3_A DNA damage-binding prot 98.1 0.0056 1.9E-07 62.1 29.5 282 21-312 553-913 (1158)
277 3qqz_A Putative uncharacterize 98.0 0.0037 1.3E-07 51.9 24.7 205 61-269 24-251 (255)
278 2xe4_A Oligopeptidase B; hydro 98.0 0.0011 3.8E-08 64.3 22.1 201 105-311 170-397 (751)
279 3v65_B Low-density lipoprotein 97.9 0.0094 3.2E-07 52.9 26.3 207 21-234 115-326 (386)
280 3kya_A Putative phosphatase; s 97.9 0.0047 1.6E-07 56.4 23.6 247 23-273 140-477 (496)
281 3v64_C Agrin; beta propeller, 97.9 0.009 3.1E-07 52.2 27.5 206 22-234 73-283 (349)
282 1flg_A Protein (quinoprotein e 97.9 0.0068 2.3E-07 56.9 25.2 164 87-259 291-548 (582)
283 2xbg_A YCF48-like protein; pho 97.9 0.0093 3.2E-07 51.6 29.3 265 20-302 34-311 (327)
284 3amr_A 3-phytase; beta-propell 97.9 0.0095 3.2E-07 51.6 23.7 198 32-233 39-271 (355)
285 2p9w_A MAL S 1 allergenic prot 97.9 0.009 3.1E-07 51.3 23.3 200 67-271 16-265 (334)
286 2p9w_A MAL S 1 allergenic prot 97.9 0.0038 1.3E-07 53.7 20.9 165 108-274 13-218 (334)
287 3m0c_C LDL receptor, low-densi 97.8 0.026 8.8E-07 54.9 31.1 243 25-278 388-639 (791)
288 1n7d_A LDL receptor, low-densi 97.8 0.00037 1.3E-08 67.0 15.1 229 42-279 385-622 (699)
289 3kya_A Putative phosphatase; s 97.7 0.026 9E-07 51.5 29.3 242 68-312 143-473 (496)
290 3sov_A LRP-6, low-density lipo 97.7 0.023 7.8E-07 48.9 25.4 205 86-301 12-225 (318)
291 2ism_A Putative oxidoreductase 97.6 0.031 1E-06 48.9 28.6 242 11-259 21-333 (352)
292 1ijq_A LDL receptor, low-densi 97.6 0.029 9.9E-07 48.2 27.7 209 21-234 29-246 (316)
293 3m0c_C LDL receptor, low-densi 97.6 0.066 2.3E-06 52.0 29.3 208 20-233 422-639 (791)
294 3p5b_L Low density lipoprotein 97.5 0.044 1.5E-06 48.8 28.4 211 19-234 109-328 (400)
295 3amr_A 3-phytase; beta-propell 97.5 0.04 1.4E-06 47.8 24.6 193 79-278 43-271 (355)
296 3sov_A LRP-6, low-density lipo 97.5 0.041 1.4E-06 47.3 27.8 227 42-278 12-245 (318)
297 3sre_A PON1, serum paraoxonase 97.4 0.037 1.3E-06 48.3 20.8 194 26-224 54-296 (355)
298 1n7d_A LDL receptor, low-densi 97.4 0.005 1.7E-07 59.2 16.7 208 22-234 406-622 (699)
299 2g8s_A Glucose/sorbosone dehyd 97.4 0.055 1.9E-06 47.3 23.6 251 11-264 8-347 (353)
300 4a0p_A LRP6, LRP-6, low-densit 97.3 0.12 4E-06 49.0 25.1 201 22-230 37-241 (628)
301 3sre_A PON1, serum paraoxonase 97.1 0.13 4.3E-06 44.9 22.3 189 103-301 45-284 (355)
302 3a9g_A Putative uncharacterize 97.0 0.15 5.1E-06 44.5 29.1 244 11-259 19-330 (354)
303 4a0p_A LRP6, LRP-6, low-densit 97.0 0.26 9.1E-06 46.5 30.2 221 41-273 13-239 (628)
304 3pbp_A Nucleoporin NUP82; beta 96.9 0.17 5.8E-06 44.9 19.2 149 117-267 30-208 (452)
305 2vpj_A Kelch-like protein 12; 96.9 0.17 5.7E-06 42.7 21.8 228 31-272 13-279 (301)
306 3s94_A LRP-6, low-density lipo 96.8 0.35 1.2E-05 45.6 27.2 227 42-278 17-250 (619)
307 3s94_A LRP-6, low-density lipo 96.7 0.45 1.5E-05 44.9 34.5 117 21-138 83-202 (619)
308 3ii7_A Kelch-like protein 7; p 96.6 0.26 8.9E-06 41.6 23.2 226 33-272 12-273 (306)
309 1tl2_A L10, protein (tachylect 96.6 0.15 5.2E-06 41.0 15.2 182 120-310 5-206 (236)
310 2xn4_A Kelch-like protein 2; s 96.3 0.39 1.3E-05 40.4 21.8 227 32-272 15-277 (302)
311 2xbg_A YCF48-like protein; pho 96.3 0.47 1.6E-05 40.7 28.1 237 20-269 78-320 (327)
312 2uvk_A YJHT; unknown function, 96.1 0.59 2E-05 40.4 18.4 56 218-276 286-347 (357)
313 1tl2_A L10, protein (tachylect 96.1 0.069 2.4E-06 43.0 10.5 147 109-263 42-202 (236)
314 3pbp_A Nucleoporin NUP82; beta 96.0 0.76 2.6E-05 40.9 20.2 133 159-295 31-191 (452)
315 1zgk_A Kelch-like ECH-associat 95.9 0.63 2.2E-05 39.3 20.7 227 30-272 22-288 (308)
316 2g8s_A Glucose/sorbosone dehyd 95.9 0.12 4E-06 45.1 12.6 147 153-301 22-215 (353)
317 2ism_A Putative oxidoreductase 95.9 0.16 5.5E-06 44.2 13.3 98 199-301 34-152 (352)
318 4asc_A Kelch repeat and BTB do 95.8 0.73 2.5E-05 39.0 21.4 225 35-272 7-278 (315)
319 2xzh_A Clathrin heavy chain 1; 95.7 0.86 2.9E-05 39.1 30.7 198 27-232 72-296 (365)
320 2vpj_A Kelch-like protein 12; 95.6 0.83 2.8E-05 38.3 23.0 177 87-273 31-233 (301)
321 1cru_A Protein (soluble quinop 95.6 1.3 4.4E-05 40.0 19.7 108 107-214 26-162 (454)
322 3ii7_A Kelch-like protein 7; p 95.3 1.1 3.9E-05 37.5 21.9 177 86-272 23-226 (306)
323 1bpo_A Protein (clathrin); cla 94.9 1.9 6.6E-05 38.5 30.5 198 27-232 71-295 (494)
324 1xi4_A Clathrin heavy chain; a 94.9 1.5 5.3E-05 45.0 17.8 195 29-231 73-294 (1630)
325 2woz_A Kelch repeat and BTB do 94.9 1.6 5.3E-05 37.0 22.3 174 89-272 80-288 (318)
326 3ei3_A DNA damage-binding prot 94.8 3.9 0.00013 41.5 28.7 210 86-304 531-757 (1158)
327 2be1_A Serine/threonine-protei 94.8 1.8 6.1E-05 37.3 20.1 191 34-230 11-235 (339)
328 1cru_A Protein (soluble quinop 94.7 0.65 2.2E-05 42.0 13.8 103 199-301 30-161 (454)
329 2zwa_A Leucine carboxyl methyl 94.0 2.8 9.5E-05 40.1 17.0 183 87-273 412-637 (695)
330 1zgk_A Kelch-like ECH-associat 93.9 2.5 8.6E-05 35.5 20.6 177 87-273 39-242 (308)
331 3a9g_A Putative uncharacterize 93.8 3.1 0.0001 36.0 27.0 229 65-302 30-330 (354)
332 3das_A Putative oxidoreductase 93.7 3.2 0.00011 35.9 19.7 151 105-258 29-219 (347)
333 3das_A Putative oxidoreductase 93.5 3.4 0.00012 35.7 29.2 243 15-259 25-326 (347)
334 2xn4_A Kelch-like protein 2; s 92.2 4.4 0.00015 33.7 22.6 177 87-273 30-231 (302)
335 2zwa_A Leucine carboxyl methyl 90.4 13 0.00043 35.5 21.6 197 31-230 396-639 (695)
336 1bpo_A Protein (clathrin); cla 89.9 11 0.00036 33.9 29.1 203 85-296 46-313 (494)
337 2wg3_C Hedgehog-interacting pr 89.8 5.9 0.0002 35.7 13.0 102 199-302 17-157 (463)
338 4asc_A Kelch repeat and BTB do 89.8 8.1 0.00028 32.4 23.2 179 87-273 13-223 (315)
339 1xi4_A Clathrin heavy chain; a 88.5 26 0.00088 36.5 20.4 35 242-276 260-294 (1630)
340 2xzh_A Clathrin heavy chain 1; 88.4 11 0.00039 32.3 29.2 201 86-294 48-312 (365)
341 3s25_A Hypothetical 7-bladed b 88.1 11 0.00037 31.7 18.0 161 114-301 59-240 (302)
342 2uvk_A YJHT; unknown function, 87.2 13 0.00045 31.6 18.8 52 118-169 65-128 (357)
343 4gq2_M Nucleoporin NUP120; bet 86.4 13 0.00044 36.9 14.1 39 108-146 236-274 (950)
344 3sbq_A Nitrous-oxide reductase 82.6 18 0.00061 33.5 11.9 107 23-131 324-461 (638)
345 2woz_A Kelch repeat and BTB do 80.8 23 0.0008 29.5 20.4 175 88-272 25-232 (318)
346 2be1_A Serine/threonine-protei 77.2 9.7 0.00033 32.7 8.2 67 208-276 11-81 (339)
347 4gq2_M Nucleoporin NUP120; bet 76.1 11 0.00038 37.4 9.3 37 242-278 237-273 (950)
348 4fhn_B Nucleoporin NUP120; pro 75.7 9.4 0.00032 38.8 8.9 39 109-147 239-277 (1139)
349 3s25_A Hypothetical 7-bladed b 73.0 40 0.0014 28.2 17.8 90 200-302 108-202 (302)
350 4fhn_B Nucleoporin NUP120; pro 71.3 9.6 0.00033 38.7 7.8 37 242-278 239-275 (1139)
351 3zwu_A Alkaline phosphatase PH 69.3 16 0.00054 34.0 8.1 58 199-258 479-548 (592)
352 4a9v_A PHOX; hydrolase, beta-p 68.9 23 0.00079 32.8 8.9 62 241-302 476-549 (592)
353 3f7f_A Nucleoporin NUP120; nuc 67.7 8.2 0.00028 36.7 5.9 37 21-59 221-257 (729)
354 3zwu_A Alkaline phosphatase PH 64.7 33 0.0011 31.9 9.3 61 241-301 476-548 (592)
355 3q6k_A 43.2 kDa salivary prote 58.0 94 0.0032 27.0 23.9 213 22-258 87-341 (381)
356 3f7f_A Nucleoporin NUP120; nuc 57.1 14 0.00047 35.2 5.3 37 109-147 223-259 (729)
357 4a9v_A PHOX; hydrolase, beta-p 57.0 45 0.0015 30.9 8.5 58 199-258 479-548 (592)
358 4hvt_A Ritya.17583.B, post-pro 49.9 1.8E+02 0.006 27.7 24.8 242 23-270 130-429 (711)
359 3ott_A Two-component system se 46.1 2E+02 0.0068 27.3 32.5 273 21-310 145-446 (758)
360 3q6k_A 43.2 kDa salivary prote 43.8 1.6E+02 0.0055 25.5 22.5 185 87-302 123-342 (381)
361 2wg3_C Hedgehog-interacting pr 42.6 1.8E+02 0.0063 25.9 27.1 30 22-51 14-44 (463)
362 3qhy_B Beta-lactamase inhibito 42.0 1.4E+02 0.0048 24.4 22.1 246 23-300 25-270 (282)
363 3ott_A Two-component system se 39.7 2.5E+02 0.0086 26.5 31.0 258 21-301 21-296 (758)
364 1b2p_A Protein (lectin); manno 39.6 95 0.0032 21.7 7.2 11 258-268 67-77 (119)
365 3sbq_A Nitrous-oxide reductase 33.5 3E+02 0.01 25.6 29.4 73 199-271 326-408 (638)
366 3mez_B Mannose-specific lectin 32.5 1.2E+02 0.0041 20.8 7.6 24 287-310 59-82 (113)
367 3a0c_A Mannose/sialic acid-bin 30.9 1.3E+02 0.0043 20.5 7.6 21 289-309 55-75 (110)
368 3no0_A DNA gyrase subunit A; D 25.1 2.8E+02 0.0095 22.6 17.8 161 107-270 67-245 (276)
369 1olz_A Semaphorin 4D; developm 22.2 4.2E+02 0.014 24.9 9.2 57 209-266 417-477 (663)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-46 Score=329.49 Aligned_cols=291 Identities=20% Similarity=0.308 Sum_probs=247.0
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
++++.++|++|.+.|++++|+|+|++|++|+.||+|+|||++++.....+..+...+..++|.+++. .+++++.|++|
T Consensus 2 ~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i 79 (304)
T 2ynn_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN--WIIVGSDDFRI 79 (304)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGT--EEEEEETTSEE
T ss_pred cceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCC--EEEEECCCCEE
Confidence 3678899999999999999999999999999999999999999999888888889999999998765 45667789999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCcee-EE-EecCCcceEEECC-CCCEEEEE
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG-IM-HVSGSRPIAAFDP-EGLIFGVG 166 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~-~~-~~~~~~~~~~~~~-~~~~~~~~ 166 (335)
++||+.+++.+..+++|.+.|++++|+|++++|+||+.|++|++||++++.... .+ .+...+..++|+| ++.++++|
T Consensus 80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg 159 (304)
T 2ynn_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (304)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence 999999999999999999999999999999999999999999999998764432 22 2344566788998 67899999
Q ss_pred EcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc--CCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCce
Q psy16316 167 VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA--DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 244 (335)
+.|++|++||++... +... ....+...+..++|+| ++.+|++++.|+.|++||+++++++..+.+| ...+.
T Consensus 160 s~D~~v~iwd~~~~~--~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h---~~~v~ 232 (304)
T 2ynn_A 160 CLDRTVKVWSLGQST--PNFT--LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH---MSNVS 232 (304)
T ss_dssp ETTSEEEEEETTCSS--CSEE--EECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC---SSCEE
T ss_pred eCCCeEEEEECCCCC--ccce--eccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC---CCCEE
Confidence 999999999997532 2222 2223334567788876 7789999999999999999999998888764 45678
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc--EEEeeece-eEEecc
Q psy16316 245 EASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN--MMASACTN-LAFWIP 310 (335)
Q Consensus 245 ~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~--~~~s~~~~-~~~w~~ 310 (335)
.++|+|++++|++|+.||+|++||..++.....+. .|...+++++|+|++. ++|+|+.+ +.+|..
T Consensus 233 ~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~ 300 (304)
T 2ynn_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-VGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (304)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CSSSSEEEEEECTTCGGGCEEEEETTEEEEEEC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc-CCCccEEEEEECCCCCceEEEEecCCceEEEEe
Confidence 89999999999999999999999999988887775 5888999999999875 58888644 566653
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.2e-47 Score=345.66 Aligned_cols=286 Identities=21% Similarity=0.375 Sum_probs=251.3
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
...+.+|.++|+++.|+|++.+|+|||.||+|+|||+++++....+.+|...|..++|.+++. ++++++.|++|++||
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 456889999999999999999999999999999999999999999999999999999998655 567778899999999
Q ss_pred cCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEcCCeE
Q psy16316 94 LHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 94 ~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v 172 (335)
+.++++++.+.+|...|.+++|+|++++|++|+.|++|++||++++.+...+. +...+..+.++|++.++++|+.|++|
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v 258 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence 99999999999999999999999999999999999999999999998876553 33445677899999999999999999
Q ss_pred EEEEccCCCCCceeeEEeccCCCccceEEEEccC--------------------CCEEEEEeCCCeEEEEECCCCeeeee
Q psy16316 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD--------------------GKYILISTNGSIIRTFDAYNGQCLQT 232 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--------------------~~~l~~~~~~~~i~i~d~~~~~~~~~ 232 (335)
++||+++.. .. .....+...+.+++|+|+ +.+|++++.|+.|++||+.+++++..
T Consensus 259 ~vwd~~~~~--~~---~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~ 333 (410)
T 1vyh_C 259 RVWVVATKE--CK---AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 333 (410)
T ss_dssp EEEETTTCC--EE---EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEEECCCCc--ee---eEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 999997632 11 122345567889999996 67899999999999999999999888
Q ss_pred ecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 233 LAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 233 ~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
+.+ |...+.+++|+|++++|++|+.|+.|++||..++..+..+. +|..+|++++|+|+++++++|+ +.+++|..
T Consensus 334 ~~~---h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 334 LVG---HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEC---CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-CCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEC---CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc-CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 866 45568899999999999999999999999998887777664 6999999999999999999986 57999974
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.7e-45 Score=326.85 Aligned_cols=289 Identities=21% Similarity=0.290 Sum_probs=247.1
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
++..++|++|.+.|+++.|+|+|++|+|||.||+|+|||..++.....+..+...+..++|++++. .+++++.|+.++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~ 122 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN--YVACGGLDNICS 122 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSS--EEEEEETTCEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCC--EEEEEeCCCeEE
Confidence 455678999999999999999999999999999999999999998888888888999999998765 566677899999
Q ss_pred EEEcCCC----ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEE
Q psy16316 91 YLSLHDN----KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 91 ~~~~~~~----~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 165 (335)
+|++.++ +....+.+|.+.|.++.|++++ .+++++.|++|++||++++++...+. +.+.+..+.++|++.++++
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9999765 3566788999999999999876 59999999999999999887765553 3455677899999999999
Q ss_pred EEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceE
Q psy16316 166 GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLE 245 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 245 (335)
|+.|++|++||++... .. .....+...+.+++|+|++++|++++.|+.|++||+++++.+..+. +......+.+
T Consensus 202 g~~d~~v~~wd~~~~~--~~---~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~~~~v~~ 275 (340)
T 1got_B 202 GACDASAKLWDVREGM--CR---QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITS 275 (340)
T ss_dssp EETTSCEEEEETTTCS--EE---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CTTCCSCEEE
T ss_pred EeCCCcEEEEECCCCe--eE---EEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc-cCCcccceEE
Confidence 9999999999998632 12 2223455678999999999999999999999999999988776654 2233446889
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEec
Q psy16316 246 ASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWI 309 (335)
Q Consensus 246 ~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~ 309 (335)
++|+|++++|++|+.|+.|++||..++.....+. +|.++|.+++|+|++.++++|+ +.+++|.
T Consensus 276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECCCCCEEEEECCCCeEEEEEcccCcEeeEee-cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999888777774 6999999999999999999997 5689994
No 4
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8e-45 Score=318.26 Aligned_cols=295 Identities=25% Similarity=0.446 Sum_probs=253.3
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
.+.+...+.+|.+.|++++|+|+|++||+|+.||+|++||..+++....+..|...+..++|.+++. .+++++.|+.+
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i 89 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN--LLVSASDDKTL 89 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCC--EEEEECCCCEE
Confidence 4677788999999999999999999999999999999999999988888888999999999998765 45666789999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEc
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 168 (335)
++||+.+++.+..+++|...|.+++|+|++++|++|+.|++|++||++++++...+. +...+..+.++|++.++++++.
T Consensus 90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
T 4ery_A 90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169 (312)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999999888766553 3445667889999999999999
Q ss_pred CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEE
Q psy16316 169 SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF 248 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 248 (335)
|+.|++||++... ... .........+..++|+|++++|++++.|+.|++||+.+++++..+.++......+.....
T Consensus 170 d~~i~~wd~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
T 4ery_A 170 DGLCRIWDTASGQ--CLK--TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245 (312)
T ss_dssp TSCEEEEETTTCC--EEE--EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEE
T ss_pred CCcEEEEECCCCc--eee--EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEE
Confidence 9999999998632 111 222334456788999999999999999999999999999998888776655444444444
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee----ceeEEeccc
Q psy16316 249 TPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC----TNLAFWIPT 311 (335)
Q Consensus 249 sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~----~~~~~w~~~ 311 (335)
.+++.+|++|+.||.|++||+.++.....+. +|.+.|.+++|+|+++++++++ +.+++|..+
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred eCCCcEEEEECCCCEEEEEECCCchhhhhhh-ccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 5788999999999999999999988877774 6999999999999999999874 569999753
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.7e-45 Score=322.20 Aligned_cols=286 Identities=18% Similarity=0.298 Sum_probs=244.5
Q ss_pred eeeeccCCccEEEEEECCC----CCEEEEecCCCeEEEEEccCCcc--eeeeecccccceEEEEecCCCeeEEeecCCCC
Q psy16316 14 AKLFRENTDKITSIDYSAD----GLLLISCSEDDQIVIYDCELGTN--KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDD 87 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~----g~~lasgs~Dg~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 87 (335)
.+.+++|+++|.+++|+|+ +.+|+|||.|++|+|||+..+.. ...+.+|...+..+++.++.. ++++++.|+
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~ 102 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLP--IAASSSLDA 102 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSS--EEEEEETTS
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCC--EEEEEeCCC
Confidence 3667899999999999985 67999999999999999987754 335677888999999987654 567788899
Q ss_pred eEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe-cCCcceEEECCCCCEEEEE
Q psy16316 88 TVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV-SGSRPIAAFDPEGLIFGVG 166 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 166 (335)
+|++||+.+++.+..+.+|...+.+++|+|++++|++|+.|+.|++||+++++....+.. ...+..++|+|+++++++|
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 999999999999999999999999999999999999999999999999998876655433 3345678899999999999
Q ss_pred EcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEE
Q psy16316 167 VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA 246 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 246 (335)
+.|+.|++||+++.. . ......+...+.+++|+|++++|++++.|+.|++||++++++...+.+ +...+.++
T Consensus 183 ~~dg~i~iwd~~~~~--~---~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~ 254 (321)
T 3ow8_A 183 AIDGIINIFDIATGK--L---LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG---HASWVLNV 254 (321)
T ss_dssp ETTSCEEEEETTTTE--E---EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC---CSSCEEEE
T ss_pred cCCCeEEEEECCCCc--E---EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC---CCCceEEE
Confidence 999999999997632 1 222334556788999999999999999999999999999988877765 45668899
Q ss_pred EEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 247 SFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 247 ~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
+|+|++++|++|+.|++|++||+.++..+..+. +|.+.|++++|+|++.+|++++ +.+++|..
T Consensus 255 ~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 255 AFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF-DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999999999999999999999998887774 6999999999999999999987 56899964
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2e-44 Score=321.72 Aligned_cols=289 Identities=18% Similarity=0.270 Sum_probs=244.4
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
+..+.|++|.+.|++++|+|+|++|||||.||+|+|||..+++....+..+...+..++|+|++. .+++++.|+.+++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v 132 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC--AIACGGLDNKCSV 132 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSS--EEEEESTTSEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCC--EEEEeeCCCCEEE
Confidence 44578999999999999999999999999999999999999988888888888899999998765 5677788999999
Q ss_pred EEcCCC------ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECC--CCCE
Q psy16316 92 LSLHDN------KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDP--EGLI 162 (335)
Q Consensus 92 ~~~~~~------~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~--~~~~ 162 (335)
|++... .....+.+|...|.+++|+|++..|++++.|++|++||++++++...+. +...+..+.+.| ++.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 998643 3456677899999999999999999999999999999999988776654 334455667776 5789
Q ss_pred EEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCC
Q psy16316 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGC 242 (335)
Q Consensus 163 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 242 (335)
+++|+.|++|++||+++.. .. .....+...+.+++|+|++.+|++++.|+.|++||+++++....+..+ .....
T Consensus 213 l~sgs~Dg~v~~wd~~~~~--~~---~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~-~~~~~ 286 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQ--CV---QAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE-SIIFG 286 (354)
T ss_dssp EEEEETTSCEEEEETTTCC--EE---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-TCCSC
T ss_pred EEEEeCCCeEEEEECCCCc--EE---EEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-Ccccc
Confidence 9999999999999998632 22 222345667899999999999999999999999999998776655432 22335
Q ss_pred ceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEec
Q psy16316 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWI 309 (335)
Q Consensus 243 v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~ 309 (335)
+.+++|+|++++|++|+.|+.|++||+.++..+..+. +|.++|++++|+|++.+|++|+ +.+++|.
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~-~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF-GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE-CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 6789999999999999999999999999888877774 6999999999999999999997 5688884
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2e-45 Score=331.33 Aligned_cols=295 Identities=18% Similarity=0.294 Sum_probs=245.0
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
+...++|++|++.|++++|+|+|++|||||.||+|+|||..+++....+..|...+..++|++++. .+++++.|+.++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~ 133 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ--SVACGGLDSACS 133 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSS--EEEECCSSSCCE
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCC--EEEEeeCCCcEE
Confidence 334578999999999999999999999999999999999999998888888999999999998765 567788999999
Q ss_pred EEEcCCC-------ceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEE------ecCCcceEEE
Q psy16316 91 YLSLHDN-------KYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMH------VSGSRPIAAF 156 (335)
Q Consensus 91 ~~~~~~~-------~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~------~~~~~~~~~~ 156 (335)
+|++.+. ...+.+.+|.+.|.++.|.|++ ..|+||+.|++|++||++++++...+. +...+..+.+
T Consensus 134 iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 213 (380)
T 3iz6_a 134 IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI 213 (380)
T ss_dssp EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred EEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEe
Confidence 9998653 2346788999999999999974 579999999999999999988766542 1222344566
Q ss_pred CC-CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecc
Q psy16316 157 DP-EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG 235 (335)
Q Consensus 157 ~~-~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 235 (335)
.+ ++.++++|+.|++|++||++.... ... ....+...+.+++|+|++.+|++++.|+.|++||+++++++..+..
T Consensus 214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~-~~~---~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 289 (380)
T 3iz6_a 214 NSLNANMFISGSCDTTVRLWDLRITSR-AVR---TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289 (380)
T ss_dssp CSSSCCEEEEEETTSCEEEEETTTTCC-CCE---EECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred ecCCCCEEEEEECCCeEEEEECCCCCc-ceE---EECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence 55 889999999999999999974321 222 2234566788999999999999999999999999999988877654
Q ss_pred ccc----CCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeC---CCCCCCeEEEEeCCCCcEEEeee--ceeE
Q psy16316 236 FLN----NKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD---ADHPSPVQTIQFNPKFNMMASAC--TNLA 306 (335)
Q Consensus 236 ~~~----~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~---~~h~~~v~~v~~sp~~~~~~s~~--~~~~ 306 (335)
+.. +...+.+++|+|+|++|++|+.||.|++||...+.....+. .+|.++|++++|+|++.+|++|+ ++++
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~ 369 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLK 369 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEE
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEE
Confidence 322 22347789999999999999999999999998887665552 56999999999999999999996 5799
Q ss_pred Eeccc
Q psy16316 307 FWIPT 311 (335)
Q Consensus 307 ~w~~~ 311 (335)
+|.+.
T Consensus 370 iW~~~ 374 (380)
T 3iz6_a 370 IWAFS 374 (380)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99754
No 8
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.4e-44 Score=316.61 Aligned_cols=296 Identities=19% Similarity=0.307 Sum_probs=237.2
Q ss_pred hcccceeeeccCCc-cEEEEEECCCCCEEEEecCCCeEEEEEccCCccee--ee-ecccccceEEEEecCCCeeEEeecC
Q psy16316 9 RSYKVAKLFRENTD-KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR--TV-FSKKYGVDLIRFTHAKQAAIHASTK 84 (335)
Q Consensus 9 ~~~~~~~~~~~h~~-~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (335)
..+++.+.+++|.+ .|.+++|+|+|++||||+.|++|+|||++++.... .+ .+|...|..++|++++. .+++++
T Consensus 3 ~~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s 80 (345)
T 3fm0_A 3 DSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASAS 80 (345)
T ss_dssp -CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEE
T ss_pred ccEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEE
Confidence 35778899999998 99999999999999999999999999998876432 22 46778899999998765 566777
Q ss_pred CCCeEEEEEcCCC--ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeE---E-EecCCcceEEECC
Q psy16316 85 IDDTVRYLSLHDN--KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGI---M-HVSGSRPIAAFDP 158 (335)
Q Consensus 85 ~d~~i~~~~~~~~--~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~---~-~~~~~~~~~~~~~ 158 (335)
.|+++++|++..+ +++..+++|...|.+++|+|++++|++|+.|++|++||++.+..... + .+...+..+.|+|
T Consensus 81 ~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160 (345)
T ss_dssp TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence 8999999999876 45788999999999999999999999999999999999987653322 2 1234456788999
Q ss_pred CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCC-----------
Q psy16316 159 EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG----------- 227 (335)
Q Consensus 159 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~----------- 227 (335)
++.++++|+.|++|++||.+... .........+...+.+++|+|++++|++++.|+.|++|+....
T Consensus 161 ~~~~l~s~s~d~~i~~w~~~~~~---~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~ 237 (345)
T 3fm0_A 161 SQELLASASYDDTVKLYREEEDD---WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGS 237 (345)
T ss_dssp SSSCEEEEETTSCEEEEEEETTE---EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred CCCEEEEEeCCCcEEEEEecCCC---EEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeecc
Confidence 99999999999999999987521 1112223455667899999999999999999999999996422
Q ss_pred ----eeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCe--------eEEEeCCCCCCCeEEEEeCCCC
Q psy16316 228 ----QCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGF--------KVCVLDADHPSPVQTIQFNPKF 295 (335)
Q Consensus 228 ----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~--------~~~~~~~~h~~~v~~v~~sp~~ 295 (335)
+++..+.+ .+...+.+++|+|++..|++++.|+.|++|+...+. .......+|...|++|+|+|++
T Consensus 238 ~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~ 315 (345)
T 3fm0_A 238 DPSWKCICTLSG--FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKE 315 (345)
T ss_dssp -CEEEEEEEECS--SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSS
T ss_pred CCccceeEEecC--CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCC
Confidence 22223322 145678899999999999999999999999976432 1222345799999999999998
Q ss_pred c-EEEeee--ceeEEeccc
Q psy16316 296 N-MMASAC--TNLAFWIPT 311 (335)
Q Consensus 296 ~-~~~s~~--~~~~~w~~~ 311 (335)
+ +||||+ +.+++|...
T Consensus 316 ~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 316 PGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp TTEEEEEETTSCEEEEEEC
T ss_pred ceEEEEcCCCCcEEEEEec
Confidence 4 899886 679999763
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.6e-43 Score=311.50 Aligned_cols=290 Identities=16% Similarity=0.234 Sum_probs=237.6
Q ss_pred hcccceeeeccCCccEEEEEECCCC-CEEEEecCCCeEEEEEccCC-----cceeeeecccccceEEEEecCCCeeEEee
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELG-----TNKRTVFSKKYGVDLIRFTHAKQAAIHAS 82 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (335)
+.+.+..+|++|+++|++++|+|++ ++|+|||.|++|++||+... .....+.+|...+..++|++++. .+++
T Consensus 5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s 82 (319)
T 3frx_A 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALS 82 (319)
T ss_dssp EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEE
T ss_pred eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEE
Confidence 3577888999999999999999965 89999999999999998653 23456678889999999998765 5667
Q ss_pred cCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECC----
Q psy16316 83 TKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDP---- 158 (335)
Q Consensus 83 ~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~---- 158 (335)
++.|++|++||+.+++.++.+.+|...|.+++|+|++++|++|+.|++|++||++.........+...+..+.+.|
T Consensus 83 ~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 83 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC---
T ss_pred EeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCC
Confidence 7789999999999999999999999999999999999999999999999999997543222223334445566776
Q ss_pred --CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc
Q psy16316 159 --EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236 (335)
Q Consensus 159 --~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 236 (335)
++..+++++.|++|++||++... .......+...+.+++|+|++++|++++.|+.|++||+.+++++..+..
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~- 236 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQ-----IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA- 236 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTE-----EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-
T ss_pred CCCccEEEEEeCCCEEEEEECCcch-----hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-
Confidence 45589999999999999997532 1122234566789999999999999999999999999999998887754
Q ss_pred ccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC-------CCCCCeEEEEeCCCCcEEEeee--ceeEE
Q psy16316 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA-------DHPSPVQTIQFNPKFNMMASAC--TNLAF 307 (335)
Q Consensus 237 ~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~-------~h~~~v~~v~~sp~~~~~~s~~--~~~~~ 307 (335)
...+.+++|+|++.+|++++.++ +++|++..+.....+.. .|...+.+++|+|+|++|++|+ +.|++
T Consensus 237 ---~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~v 312 (319)
T 3frx_A 237 ---QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312 (319)
T ss_dssp ---CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ---CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEE
Confidence 24688999999999999988655 99999987765554432 2456799999999999999996 56999
Q ss_pred ecc
Q psy16316 308 WIP 310 (335)
Q Consensus 308 w~~ 310 (335)
|..
T Consensus 313 Wd~ 315 (319)
T 3frx_A 313 WQV 315 (319)
T ss_dssp EEE
T ss_pred EEE
Confidence 975
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.7e-43 Score=337.77 Aligned_cols=301 Identities=19% Similarity=0.209 Sum_probs=233.0
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcc--eeeeecccccceEEEEecCCC------------
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTN--KRTVFSKKYGVDLIRFTHAKQ------------ 76 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~------------ 76 (335)
.+..+.|.+|++.|++++|+|+|++||||+.|++|+|||+.+++. ...+..|...|..++|++++.
T Consensus 49 ~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~ 128 (611)
T 1nr0_A 49 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 128 (611)
T ss_dssp SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCS
T ss_pred cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCce
Confidence 456678999999999999999999999999999999999875432 223333444444444444322
Q ss_pred -------------------------------eeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEe
Q psy16316 77 -------------------------------AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISG 125 (335)
Q Consensus 77 -------------------------------~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~ 125 (335)
...+++++.|+++++||..++++...+.+|...|++++|+|++++|+||
T Consensus 129 ~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 129 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp EEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred eEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE
Confidence 1235677789999999999999999999999999999999999999999
Q ss_pred eCCCcEEEeecCCCCceeEE--------EecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCcee-----------
Q psy16316 126 SYDKTVRLWDLRSPNCQGIM--------HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFS----------- 186 (335)
Q Consensus 126 s~D~~i~vWd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~----------- 186 (335)
+.|++|++||+.++++...+ .+.+.+..++|+|++.++++++.|++|++||+++.......
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeE
Confidence 99999999999988776554 23445667899999999999999999999998753210000
Q ss_pred ---------------------------eEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec-ccc-
Q psy16316 187 ---------------------------NFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA-GFL- 237 (335)
Q Consensus 187 ---------------------------~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~- 237 (335)
.......+...+.+++|+|++++|++++.|+.|++||+.++++...+. +|.
T Consensus 289 ~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~ 368 (611)
T 1nr0_A 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT 368 (611)
T ss_dssp EEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSS
T ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcc
Confidence 011122455678899999999999999999999999998776543220 000
Q ss_pred -----------------------------------------------------------------------------cCC
Q psy16316 238 -----------------------------------------------------------------------------NNK 240 (335)
Q Consensus 238 -----------------------------------------------------------------------------~~~ 240 (335)
.+.
T Consensus 369 ~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~ 448 (611)
T 1nr0_A 369 MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS 448 (611)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECS
T ss_pred eEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecC
Confidence 011
Q ss_pred CCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 241 ~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
..+.+++|+|||++||+|+.|++|++||+..+........+|+..|++++|+|++++|++++ +++++|...
T Consensus 449 ~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~ 521 (611)
T 1nr0_A 449 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVA 521 (611)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGG
T ss_pred CCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcC
Confidence 23567899999999999999999999999776432211246999999999999999999997 569999764
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1e-43 Score=339.17 Aligned_cols=294 Identities=21% Similarity=0.326 Sum_probs=236.3
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee-------cccccceEEEEecCCCeeEEee
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-------SKKYGVDLIRFTHAKQAAIHAS 82 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 82 (335)
.++..+.|.+|.+.|.+++|+|+|++||||+.|++|+|||+.+++....+. +|...|..++|++++. .+++
T Consensus 179 ~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~s 256 (611)
T 1nr0_A 179 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT--KIAS 256 (611)
T ss_dssp TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS--EEEE
T ss_pred CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC--EEEE
Confidence 456677899999999999999999999999999999999999988877663 6788899999998765 4567
Q ss_pred cCCCCeEEEEEcCCCceEe-------------------------------------------eecCCCCCeEEEEECCCC
Q psy16316 83 TKIDDTVRYLSLHDNKYIR-------------------------------------------YFPGHTKKVNSLCLSPID 119 (335)
Q Consensus 83 ~~~d~~i~~~~~~~~~~~~-------------------------------------------~~~~H~~~V~~~~~~~~~ 119 (335)
++.|++|++||+.+++.+. .+.+|...|++++|+|++
T Consensus 257 ~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg 336 (611)
T 1nr0_A 257 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG 336 (611)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred EeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC
Confidence 7789999999998765443 446899999999999999
Q ss_pred CEEEEeeCCCcEEEeecCCCCceeEE------------------------------------------------------
Q psy16316 120 DTFISGSYDKTVRLWDLRSPNCQGIM------------------------------------------------------ 145 (335)
Q Consensus 120 ~~l~s~s~D~~i~vWd~~~~~~~~~~------------------------------------------------------ 145 (335)
++|+|++.|++|++||+.++.+....
T Consensus 337 ~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 416 (611)
T 1nr0_A 337 KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 416 (611)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEE
T ss_pred CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcE
Confidence 99999999999999998765432110
Q ss_pred -----------------------------EecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCc
Q psy16316 146 -----------------------------HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC 196 (335)
Q Consensus 146 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 196 (335)
.+......++|+|+++++++|+.|++|++||+... ....... ..+..
T Consensus 417 ~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~---~~~~~~~-~~h~~ 492 (611)
T 1nr0_A 417 LAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA---SVSEVKT-IVHPA 492 (611)
T ss_dssp EEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETT---EEEEEEE-EECSS
T ss_pred EEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCC---ceeeeec-cCCCC
Confidence 00011235689999999999999999999998752 1111222 34556
Q ss_pred cceEEEEccCCCEEEEEeCCCeEEEEECCC-CeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeE
Q psy16316 197 DWTGIKFSADGKYILISTNGSIIRTFDAYN-GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKV 275 (335)
Q Consensus 197 ~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~ 275 (335)
.+.+++|+|++++|++++.|+.|++|++.+ +++.... ....|...|.+++|+||+++||+|+.|++|++||+.++.+.
T Consensus 493 ~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~-~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~ 571 (611)
T 1nr0_A 493 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN-SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH 571 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC-CCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred ceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeee-eeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccc
Confidence 789999999999999999999999999987 5554321 11225677899999999999999999999999999876532
Q ss_pred E-EeCCCC-CCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 276 C-VLDADH-PSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 276 ~-~~~~~h-~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
. ....+| ...|++++|+|++. +++++ +++++|.++
T Consensus 572 ~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 572 PIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp CEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred cchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 2 334578 89999999999998 88775 679999764
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.4e-43 Score=313.33 Aligned_cols=282 Identities=15% Similarity=0.192 Sum_probs=220.7
Q ss_pred ccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCC-----------cceeeeecccccceEEEEecCCCeeEEeecCCC
Q psy16316 18 RENTDKITSIDYSADGLLLISCSEDDQIVIYDCELG-----------TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKID 86 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 86 (335)
..|.+.|.+++|+|||++|++++ |+++|+||.... ........+..+|..++|.++. .+++++.|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~---~l~~~s~d 102 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER---GILVASDS 102 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT---EEEEEETT
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC---eEEEEECC
Confidence 46888999999999999999988 778888874211 1112223445679999999874 24466789
Q ss_pred CeEEEEEcCCCceEee----ecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCC-
Q psy16316 87 DTVRYLSLHDNKYIRY----FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEG- 160 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~----~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~- 160 (335)
++|++||+.+++.+.. +.+|.+.|++++|+|++++|+||+.|++|++||++++++...+. +...+..+.|++++
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~ 182 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD 182 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCT
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCC
Confidence 9999999998875543 45899999999999999999999999999999999988776553 45556778899987
Q ss_pred CEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC-CCEEEEEeCCCeEEEEECCCCeeeeeecccccC
Q psy16316 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD-GKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN 239 (335)
Q Consensus 161 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 239 (335)
.++++++.|++|++||+++.+. ...+.. ..+...+.+++|+|+ +.+|++++.|+.|++||+++++++..+.+ |
T Consensus 183 ~~l~s~s~D~~v~iwd~~~~~~--~~~~~~-~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~---h 256 (344)
T 4gqb_B 183 SVFLSCSEDNRILLWDTRCPKP--ASQIGC-SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV---H 256 (344)
T ss_dssp TEEEEEETTSCEEEEETTSSSC--EEECC-----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC---C
T ss_pred Cceeeeccccccccccccccce--eeeeec-ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC---C
Confidence 5889999999999999986432 222211 122334678999995 56888999999999999999999888876 4
Q ss_pred CCCceEEEEcCCC-cEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc-EEEeee--ceeEEeccc
Q psy16316 240 KGCPLEASFTPDS-KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN-MMASAC--TNLAFWIPT 311 (335)
Q Consensus 240 ~~~v~~~~~sp~~-~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~~~s~~--~~~~~w~~~ 311 (335)
...|.+++|+|++ ++||+|+.|++|+|||..++... .+ .+|.+.|++|+|+|+++ ++++++ +.|++|..+
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~-~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RS-QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EE-cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 5568899999998 58999999999999999887654 34 46999999999999986 566775 679999763
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.1e-44 Score=317.87 Aligned_cols=284 Identities=17% Similarity=0.166 Sum_probs=221.4
Q ss_pred eccCCccEEEEEECCCCCEEEEecC------CCeEEEEEccCCcce----eeeecccccceEEEEecCCCeeEEeecCCC
Q psy16316 17 FRENTDKITSIDYSADGLLLISCSE------DDQIVIYDCELGTNK----RTVFSKKYGVDLIRFTHAKQAAIHASTKID 86 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~lasgs~------Dg~i~lwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 86 (335)
...|++.|++|+|||||++|||||. |++|++|+..++... .....+...|..++|.+++. + ++++.|
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~--~-l~~s~d 114 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG--I-LVASDS 114 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE--E-EEEETT
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC--E-EEEECC
Confidence 4579999999999999999999997 788999998776543 23345677899999998753 2 234569
Q ss_pred CeEEEEEcCCCceEe----eecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCC-
Q psy16316 87 DTVRYLSLHDNKYIR----YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEG- 160 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~----~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~- 160 (335)
++|++||+.+++... ...+|...|++++|+|++++|++|+.|++|++||++++++...+. +...+..++|++++
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~ 194 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD 194 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC
Confidence 999999998876543 345899999999999999999999999999999999887766553 34456678899887
Q ss_pred CEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC-CEEEEEeCCCeEEEEECCCCeeeeeecccccC
Q psy16316 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG-KYILISTNGSIIRTFDAYNGQCLQTLAGFLNN 239 (335)
Q Consensus 161 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 239 (335)
.++++++.|++|++||+++.... ... ....+...+.+++|+|++ .+|++++.|+.|++||++++++.+.+.+ +
T Consensus 195 ~~~~s~~~dg~v~~wd~~~~~~~--~~~-~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~---~ 268 (357)
T 4g56_B 195 TIFLSCGEDGRILLWDTRKPKPA--TRI-DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV---H 268 (357)
T ss_dssp SCEEEEETTSCEEECCTTSSSCB--CBC-CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC---C
T ss_pred ceeeeeccCCceEEEECCCCcee--eee-eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec---c
Confidence 47889999999999999864321 111 112334557889999985 6788999999999999999988887765 4
Q ss_pred CCCceEEEEcCCC-cEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCC-CCcEEEeee--ceeEEeccc
Q psy16316 240 KGCPLEASFTPDS-KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP-KFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 240 ~~~v~~~~~sp~~-~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~~~s~~--~~~~~w~~~ 311 (335)
...+.+++|+|++ ++||+|+.|++|+|||+.++.....+ +|.++|++|+||| ++.+|++++ +.|++|.++
T Consensus 269 ~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 269 SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 4568899999987 58999999999999999988766543 6999999999999 789999886 679999753
No 14
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.3e-43 Score=309.54 Aligned_cols=290 Identities=17% Similarity=0.215 Sum_probs=229.5
Q ss_pred hcccceeeeccCCccEEEEEE-----CC-CCCEEEEecCCCeEEEEEccCCc-------ceeeeecccccceEEEEecCC
Q psy16316 9 RSYKVAKLFRENTDKITSIDY-----SA-DGLLLISCSEDDQIVIYDCELGT-------NKRTVFSKKYGVDLIRFTHAK 75 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~-----s~-~g~~lasgs~Dg~i~lwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 75 (335)
..+++...|++|++.|+++.| ++ ++++|||||.|++|++||+...+ ....+.+|...|..++|+++.
T Consensus 9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~ 88 (343)
T 2xzm_R 9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN 88 (343)
T ss_dssp EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST
T ss_pred eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC
Confidence 356778899999999999999 76 99999999999999999997542 345567788899999998865
Q ss_pred CeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE---EecCCcc
Q psy16316 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM---HVSGSRP 152 (335)
Q Consensus 76 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~---~~~~~~~ 152 (335)
. ++++++.|++|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+......... .+...+.
T Consensus 89 ~--~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 89 C--FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVS 166 (343)
T ss_dssp T--EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEE
T ss_pred C--EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceee
Confidence 5 5567778999999999999999999999999999999999999999999999999999743211111 1223345
Q ss_pred eEEECCCC----------CEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEE
Q psy16316 153 IAAFDPEG----------LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTF 222 (335)
Q Consensus 153 ~~~~~~~~----------~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~ 222 (335)
.+.++|++ .++++++.|++|++||.+. ... .....+...+.+++|+|++++|++++.|+.|++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~---~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iw 240 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF---QIR---YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT---EEE---EEEECCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC---cee---EEEcCccccceEEEECCCCCEEEEEcCCCeEEEE
Confidence 67788776 7899999999999999532 111 1223455678899999999999999999999999
Q ss_pred ECCCCe-eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEE--EeC----------CCCCCCeEEE
Q psy16316 223 DAYNGQ-CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVC--VLD----------ADHPSPVQTI 289 (335)
Q Consensus 223 d~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~--~~~----------~~h~~~v~~v 289 (335)
|+.+.. ....+. +...+.+++|+|+++++++| .|+.|++||+.++.... .+. .+|...|+++
T Consensus 241 d~~~~~~~~~~~~----~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 315 (343)
T 2xzm_R 241 DILNLTYPQREFD----AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSL 315 (343)
T ss_dssp ESSCCSSCSEEEE----CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEE
T ss_pred ECCCCcccceeec----CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEE
Confidence 995433 333321 23458899999999888765 57789999997654322 332 1588899999
Q ss_pred EeCCCCcEEEeee--ceeEEeccc
Q psy16316 290 QFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 290 ~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
+|+|++++|++|+ +.+++|...
T Consensus 316 ~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 316 AWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp EECSSSCCEEEEETTSEEEEEEEE
T ss_pred EECCCCCeEEEecCCceEEEEEEE
Confidence 9999999999986 578999753
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-42 Score=313.87 Aligned_cols=284 Identities=20% Similarity=0.393 Sum_probs=234.0
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeeccc------------------ccceEEEEecCCCeeEE
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKK------------------YGVDLIRFTHAKQAAIH 80 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~ 80 (335)
+|.+.|++++|+|||++||+|+ |++++||++.+++....+..+. ..+..++|++++. .+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~--~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK--FL 138 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS--EE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC--EE
Confidence 6999999999999999999987 7899999999988766554332 1377889988765 45
Q ss_pred eecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECC-C
Q psy16316 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDP-E 159 (335)
Q Consensus 81 ~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~-~ 159 (335)
++++.|++|++||+.+++.+..+.+|...|.+++|+|+++.|++|+.|++|++||++++++...+........++++| +
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred EEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence 667789999999999999999999999999999999999999999999999999999988777666666667788998 8
Q ss_pred CCEEEEEEcCCeEEEEEccCCCCCceeeEE----eccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCe-------
Q psy16316 160 GLIFGVGVNSDTIKLYDVRSFDKGPFSNFK----FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQ------- 228 (335)
Q Consensus 160 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~------- 228 (335)
+.++++|+.|++|++||+++.. ....+. ....+...+.+++|+|++++|++++.|+.|++||+++..
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCC--EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred CCEEEEEcCCCcEEEEECCCCc--EEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccC
Confidence 9999999999999999997632 111111 112345678899999999999999999999999997643
Q ss_pred -----eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCC------CCcE
Q psy16316 229 -----CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP------KFNM 297 (335)
Q Consensus 229 -----~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp------~~~~ 297 (335)
+...+. .|...+.+++|+|++++|++|+.|+.|++||..++.....+. +|.+.|.+++|+| ++++
T Consensus 297 ~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~-~h~~~v~~v~~~~~~~~~p~~~~ 372 (393)
T 1erj_A 297 PNSGTCEVTYI---GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSLGPEYNV 372 (393)
T ss_dssp ----CEEEEEE---CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSCTTCTTCEE
T ss_pred CCCCcceEEEe---cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC-CCCCCEEEEEecCCcCcCCCCCE
Confidence 223333 355678899999999999999999999999999988877774 6999999999876 6889
Q ss_pred EEeee--ceeEEeccc
Q psy16316 298 MASAC--TNLAFWIPT 311 (335)
Q Consensus 298 ~~s~~--~~~~~w~~~ 311 (335)
+++|+ +.+++|...
T Consensus 373 l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 373 FATGSGDCKARIWKYK 388 (393)
T ss_dssp EEEEETTSEEEEEEEE
T ss_pred EEEECCCCcEEECccc
Confidence 99986 569999764
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-42 Score=303.90 Aligned_cols=293 Identities=16% Similarity=0.244 Sum_probs=223.8
Q ss_pred HhcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc--ceeee-ec-ccccceEEEEecCCCeeEEeec
Q psy16316 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT--NKRTV-FS-KKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 8 ~~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~--~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
++++++.+.|++|+++|.+++|+|+ +||||+.|++|++||++.+. ....+ .. |...|..++|+|++. +++++
T Consensus 1 ~~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~--~las~ 76 (330)
T 2hes_X 1 MASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS--LLAAG 76 (330)
T ss_dssp --CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS--EEEEE
T ss_pred CcccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC--EEEEE
Confidence 3567889999999999999999998 99999999999999998753 33333 23 778899999998754 56677
Q ss_pred CCCCeEEEEEcCC-------CceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCC-C---ceeEE-EecCCc
Q psy16316 84 KIDDTVRYLSLHD-------NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP-N---CQGIM-HVSGSR 151 (335)
Q Consensus 84 ~~d~~i~~~~~~~-------~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~-~---~~~~~-~~~~~~ 151 (335)
+.|++|++|++.. .+.+..+++|...|.+++|+|++++|+||+.|++|++||++.. . +...+ .+...+
T Consensus 77 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v 156 (330)
T 2hes_X 77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV 156 (330)
T ss_dssp ETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCE
T ss_pred eCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCce
Confidence 7899999999853 3567788999999999999999999999999999999999533 2 22222 233456
Q ss_pred ceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC--CCEEEEEeCCCeEEEEECCCC--
Q psy16316 152 PIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD--GKYILISTNGSIIRTFDAYNG-- 227 (335)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~~~~i~i~d~~~~-- 227 (335)
..+.|+|++.++++|+.|++|++||.+... .........+...+.+++|+|+ +..|++++.|+.|++||+..+
T Consensus 157 ~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~ 233 (330)
T 2hes_X 157 KHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE 233 (330)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence 678899999999999999999999986421 1222333456667889999999 778999999999999998754
Q ss_pred ------eeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCe--eEEEeCCCCCC-CeEEEEeCC--CCc
Q psy16316 228 ------QCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGF--KVCVLDADHPS-PVQTIQFNP--KFN 296 (335)
Q Consensus 228 ------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~--~~~~~~~~h~~-~v~~v~~sp--~~~ 296 (335)
.+...+.. .+...+.+++|+|++ +|++|+.||.|++||..++. ........|.. .|++++|+| ++.
T Consensus 234 ~~~~~~~~~~~~~~--~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~ 310 (330)
T 2hes_X 234 DDQQEWVCEAILPD--VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKT 310 (330)
T ss_dssp TSCEEEEEEEECCS--CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----C
T ss_pred cccceeEEeeeccc--ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCce
Confidence 22333221 255678999999765 89999999999999987763 23333456877 899999999 688
Q ss_pred EEEeee--ceeEEecc
Q psy16316 297 MMASAC--TNLAFWIP 310 (335)
Q Consensus 297 ~~~s~~--~~~~~w~~ 310 (335)
+||+|+ +++++|.+
T Consensus 311 ~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 311 ILATGGDDGIVNFWSL 326 (330)
T ss_dssp CEEEEETTSEEEEEEC
T ss_pred EEEEecCCCcEEEEEe
Confidence 999886 57999975
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.3e-39 Score=285.91 Aligned_cols=290 Identities=19% Similarity=0.263 Sum_probs=235.2
Q ss_pred hcccceeeeccCCccEEEEEECCC-CCEEEEecCCCeEEEEEccCCcc-----eeeeecccccceEEEEecCCCeeEEee
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSAD-GLLLISCSEDDQIVIYDCELGTN-----KRTVFSKKYGVDLIRFTHAKQAAIHAS 82 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~-g~~lasgs~Dg~i~lwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (335)
+.+.+..+|+||++.|++|+|+|+ +++|||||.||+|+|||+.+.+. ...+.+|...|..++|++++. .+++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s 103 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALS 103 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEE
Confidence 456777889999999999999998 68999999999999999976543 445667888999999998765 4566
Q ss_pred cCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE--EecCCcceEEECCC-
Q psy16316 83 TKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPE- 159 (335)
Q Consensus 83 ~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~--~~~~~~~~~~~~~~- 159 (335)
++.|+.+++|+............+...+..+.++++++.|++|+.|+.+++||+......... .+......+.+.++
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence 778999999999999988888899999999999999999999999999999998765432221 12233445667665
Q ss_pred -CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccccc
Q psy16316 160 -GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN 238 (335)
Q Consensus 160 -~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 238 (335)
..++++++.|++|++||++... .......+...+.+++|+|++++|++++.|+.|++||+++.+++..+..
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--- 255 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCK-----LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG--- 255 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC---
T ss_pred CCcEEEEEcCCCEEEEEECCCCc-----eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC---
Confidence 4678899999999999997632 1222334566789999999999999999999999999999988877654
Q ss_pred CCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeC--------CCCCCCeEEEEeCCCCcEEEeee--ceeEEe
Q psy16316 239 NKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD--------ADHPSPVQTIQFNPKFNMMASAC--TNLAFW 308 (335)
Q Consensus 239 ~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~--------~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w 308 (335)
...+..++|+|++.+ ++++.|+.|++||+..+.....+. ..|...|++++|+|++++|++|+ +.|++|
T Consensus 256 -~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 256 -GDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333 (340)
T ss_dssp -SSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred -CceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 345788999998765 556679999999998776554432 35889999999999999999987 568999
Q ss_pred cc
Q psy16316 309 IP 310 (335)
Q Consensus 309 ~~ 310 (335)
.+
T Consensus 334 ~~ 335 (340)
T 4aow_A 334 QV 335 (340)
T ss_dssp EE
T ss_pred eC
Confidence 75
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.4e-40 Score=309.42 Aligned_cols=282 Identities=25% Similarity=0.407 Sum_probs=235.7
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
.++.+.+.+|.+.|.+++|+|++++|++++.|++|++||.... ....+..+...+..++|++++. .+++++.|+.++
T Consensus 293 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~dg~v~ 369 (577)
T 2ymu_A 293 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQ--TIASASDDKTVK 369 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCC--EEEEEeCCCEEE
Confidence 3556778999999999999999999999999999999998644 4556677888899999988765 455666799999
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEcC
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNS 169 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d 169 (335)
+|+. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||... +....+ .+...+..++|+|++.++++++.|
T Consensus 370 ~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 370 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp EEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence 9995 5677888999999999999999999999999999999999643 433333 344455678899999999999999
Q ss_pred CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEc
Q psy16316 170 DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s 249 (335)
++|++||... ... .....+...+.+++|+|++++|++++.|+.|++||. ++++++.+.+ |...|.+++|+
T Consensus 448 ~~v~~w~~~~---~~~---~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~---h~~~v~~l~~s 517 (577)
T 2ymu_A 448 KTVKLWNRNG---QLL---QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG---HSSSVRGVAFS 517 (577)
T ss_dssp SEEEEEETTS---CEE---EEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEEC---CSSCEEEEEEC
T ss_pred CEEEEEECCC---CEE---EEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeC---CCCCEEEEEEc
Confidence 9999999643 122 222345567889999999999999999999999995 6777777765 45668899999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEec
Q psy16316 250 PDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWI 309 (335)
Q Consensus 250 p~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~ 309 (335)
|++++||+++.||.|++||. ++..+..+. +|.++|++++|+|++.+|++++ +++++|+
T Consensus 518 ~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 518 PDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TTSSCEEEEETTSEEEEECT-TSCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEECcCEEEEEeC-CCCEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999999996 566666664 6999999999999999999987 5699995
No 19
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.1e-39 Score=293.46 Aligned_cols=297 Identities=15% Similarity=0.187 Sum_probs=235.7
Q ss_pred HhcccceeeeccCCccEEEEEECCCC-CEEEEecCCCeEEEEEccCCcceeeee--cccccceEEEEecCCCeeEEeecC
Q psy16316 8 IRSYKVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVF--SKKYGVDLIRFTHAKQAAIHASTK 84 (335)
Q Consensus 8 ~~~~~~~~~~~~h~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 84 (335)
++.+++.+.+.+|.+.|++++|+|+| ++||+|+.||+|+|||+.+++....+. +|...+..++|++.. ...+++++
T Consensus 60 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~ 138 (383)
T 3ei3_B 60 LKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFN-TNQLFVSS 138 (383)
T ss_dssp HTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTE-EEEEEEEE
T ss_pred ccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCC-CCEEEEEe
Confidence 35688889999999999999999999 999999999999999999887766654 578889999998842 34566677
Q ss_pred CCCeEEEEEcCCCceEeeecC---CCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCC
Q psy16316 85 IDDTVRYLSLHDNKYIRYFPG---HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEG 160 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~~~~~~~---H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~ 160 (335)
.|+.+++||+.. +.+..+.. |...|.+++|+|++++|++|+.|+.|++||++ ++....+ .+...+..++|+|++
T Consensus 139 ~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~ 216 (383)
T 3ei3_B 139 IRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRC 216 (383)
T ss_dssp TTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSC
T ss_pred CCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCC
Confidence 899999999986 44555544 45889999999999999999999999999995 4444333 345556778999999
Q ss_pred C-EEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc-CCCEEEEEeCCCeEEEEECCCCeeeeeeccccc
Q psy16316 161 L-IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA-DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN 238 (335)
Q Consensus 161 ~-~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 238 (335)
. ++++++.|++|++||++........ ... ..+...+.+++|+| ++.+|++++.|+.|++||++++++...+.++..
T Consensus 217 ~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~-~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 294 (383)
T 3ei3_B 217 DWLMATSSVDATVKLWDLRNIKDKNSY-IAE-MPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH 294 (383)
T ss_dssp TTEEEEEETTSEEEEEEGGGCCSTTCE-EEE-EECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred CCEEEEEeCCCEEEEEeCCCCCcccce-EEE-ecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc
Confidence 8 9999999999999999874321111 111 13556789999999 999999999999999999999887776664431
Q ss_pred ----CC----------CCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCC-CCCCeEEEEeCCCCcEEEeee-
Q psy16316 239 ----NK----------GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD-HPSPVQTIQFNPKFNMMASAC- 302 (335)
Q Consensus 239 ----~~----------~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~-h~~~v~~v~~sp~~~~~~s~~- 302 (335)
+. ..+..++|+|++++ +|+.|+.|++||+.++..+..+... |.+.+..++|+|++.+|++++
T Consensus 295 ~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd 372 (383)
T 3ei3_B 295 RQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMG 372 (383)
T ss_dssp CCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEET
T ss_pred cccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEecC
Confidence 11 12333566666666 7789999999999999887777532 567788889999999999886
Q ss_pred ceeEEeccc
Q psy16316 303 TNLAFWIPT 311 (335)
Q Consensus 303 ~~~~~w~~~ 311 (335)
+.+++|.++
T Consensus 373 ~~i~iw~~~ 381 (383)
T 3ei3_B 373 FNILIWNRE 381 (383)
T ss_dssp TEEEEEECC
T ss_pred CcEEEEecC
Confidence 579999753
No 20
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.3e-40 Score=305.07 Aligned_cols=302 Identities=17% Similarity=0.267 Sum_probs=235.9
Q ss_pred HHhcccceeeeccCCccEEEEEECC-CCCEEEEecCCCeEEEEEccCCccee--eeecccccceEEEEecCCCeeEEeec
Q psy16316 7 VIRSYKVAKLFRENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCELGTNKR--TVFSKKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 7 ~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
.++.+++.+...+|.+.|+||+|+| ++.+||+|+.||+|+|||+.+++... ...+|...|..++|+|... ..++++
T Consensus 105 ~~~~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~-~~l~s~ 183 (435)
T 4e54_B 105 TLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNT-NQFYAS 183 (435)
T ss_dssp TTTTTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCT-TEEEEE
T ss_pred cccceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCC-CEEEEE
Confidence 3456778888899999999999999 56799999999999999998876543 3456888999999987432 356677
Q ss_pred CCCCeEEEEEcCCCceEeeecCC--CCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCC
Q psy16316 84 KIDDTVRYLSLHDNKYIRYFPGH--TKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGL 161 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~~~H--~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (335)
+.|++|++||++++........| ...+.+++|+|++++|++|+.||.|++||++.........+...+..+.|+|++.
T Consensus 184 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 184 SMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCD 263 (435)
T ss_dssp CSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCS
T ss_pred eCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCc
Confidence 88999999999876554444433 4567899999999999999999999999997644333223445566788999875
Q ss_pred -EEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccC-
Q psy16316 162 -IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN- 239 (335)
Q Consensus 162 -~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~- 239 (335)
++++|+.|++|++||++...... .+.....+...+.+++|+|++.+|++++.|+.|++||+.++++...+..+...
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~~--~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 341 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGKA--SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH 341 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSSS--CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred eEEEEecCcceeeEEecccccccc--eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc
Confidence 78899999999999998744221 11222345567889999999999999999999999999999887776554321
Q ss_pred --CCCceEEEEcCCCcEEEEEe------------CCCcEEEEECCCCeeEEEeCCCCCCCeEEE-EeCCCCcEEEeee-c
Q psy16316 240 --KGCPLEASFTPDSKYVISGS------------TDGRIHIWNAEKGFKVCVLDADHPSPVQTI-QFNPKFNMMASAC-T 303 (335)
Q Consensus 240 --~~~v~~~~~sp~~~~l~tgs------------~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v-~~sp~~~~~~s~~-~ 303 (335)
...+..+.|+|++.++++++ .++.|++||..++.....+..+|...|.++ +|||+|.+||+|+ +
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~ 421 (435)
T 4e54_B 342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGY 421 (435)
T ss_dssp CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSS
T ss_pred cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCC
Confidence 11234567888877777764 345799999999988888777899999987 6999999999885 5
Q ss_pred eeEEeccc
Q psy16316 304 NLAFWIPT 311 (335)
Q Consensus 304 ~~~~w~~~ 311 (335)
.|++|.+.
T Consensus 422 ~i~iW~~~ 429 (435)
T 4e54_B 422 HILIWSQQ 429 (435)
T ss_dssp EEEECCCC
T ss_pred cEEEEECC
Confidence 79999753
No 21
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-39 Score=286.16 Aligned_cols=289 Identities=16% Similarity=0.210 Sum_probs=245.3
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
+.....|++|++.|++++|+|+|++|++|+.||.|++||+.+++....+..|...+..++|.+++. .+++++.|+.|+
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~ 99 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK--YCVTGSADYSIK 99 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS--EEEEEETTTEEE
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEE
Confidence 344466899999999999999999999999999999999999999888888999999999998655 445666799999
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCC-----CcEEEeecCCCCceeEE------------EecC--Cc
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD-----KTVRLWDLRSPNCQGIM------------HVSG--SR 151 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D-----~~i~vWd~~~~~~~~~~------------~~~~--~~ 151 (335)
+||+.+++.+..+. |...|.+++|+|+++.+++++.+ +.|++||+......... ...+ ..
T Consensus 100 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 100 LWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp EEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred EEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 99999999998888 88999999999999999999999 99999999866432211 1111 45
Q ss_pred ceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeee
Q psy16316 152 PIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQ 231 (335)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~ 231 (335)
..+.++|+++++++++.++.|++||++... . .......+...+.+++|+|++.+|++++.++.|++||+.+++...
T Consensus 179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNY-E---YVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254 (369)
T ss_dssp EEEEECGGGCEEEEEETTSEEEEEETTTTT-E---EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred eEEEEcCCCCEEEEEcCCCEEEEEECCCCc-E---eEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence 567899999999999999999999997521 1 122223345678899999999999999999999999999998887
Q ss_pred eecccccCCCCceEEEEcCCCcEEEEEeCCC--------------cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcE
Q psy16316 232 TLAGFLNNKGCPLEASFTPDSKYVISGSTDG--------------RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNM 297 (335)
Q Consensus 232 ~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg--------------~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 297 (335)
.+. +...+..++|+|+++++++++.++ .+++||..++.....+. +|.+.|++++|+|++++
T Consensus 255 ~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~ 329 (369)
T 3zwl_B 255 KYE----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ-GHFGPLNTVAISPQGTS 329 (369)
T ss_dssp EEE----CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSE
T ss_pred eec----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee-cccCcEEEEEECCCCCE
Confidence 765 345678899999999999999998 89999999988877774 59999999999999999
Q ss_pred EEeee--ceeEEeccc
Q psy16316 298 MASAC--TNLAFWIPT 311 (335)
Q Consensus 298 ~~s~~--~~~~~w~~~ 311 (335)
+++++ +.+++|.++
T Consensus 330 l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 330 YASGGEDGFIRLHHFE 345 (369)
T ss_dssp EEEEETTSEEEEEEEC
T ss_pred EEEEcCCCeEEEEECc
Confidence 99996 568999764
No 22
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.1e-39 Score=292.61 Aligned_cols=295 Identities=15% Similarity=0.285 Sum_probs=242.5
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc------ceeeeecccccceEEEEecC----C-CeeE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT------NKRTVFSKKYGVDLIRFTHA----K-QAAI 79 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~------~~~~~~~~~~~~~~~~~~~~----~-~~~~ 79 (335)
....+.+++|.+.|++++|+| .+|++|+.||+|++||+++++ ....+..|...+..++|.++ + ....
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 455677899999999999999 899999999999999999988 67778888899999999987 3 1145
Q ss_pred EeecCCCCeEEEEEcCCCce-----EeeecCC-----CCCeEEEEEC----CCCCE-EEEeeCCCcEEEeecCC------
Q psy16316 80 HASTKIDDTVRYLSLHDNKY-----IRYFPGH-----TKKVNSLCLS----PIDDT-FISGSYDKTVRLWDLRS------ 138 (335)
Q Consensus 80 ~~~~~~d~~i~~~~~~~~~~-----~~~~~~H-----~~~V~~~~~~----~~~~~-l~s~s~D~~i~vWd~~~------ 138 (335)
+++++.|+.|++|++.+++. +..+.+| ...|.+++|+ |+++. |++++.|+.|++||+++
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 66677899999999998887 8888899 5999999999 99999 99999999999999988
Q ss_pred CCcee-----EEE--------ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCC---CccceEEE
Q psy16316 139 PNCQG-----IMH--------VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEK---ECDWTGIK 202 (335)
Q Consensus 139 ~~~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~ 202 (335)
+.... .+. ....+..+.++|++ ++++++.|+.|++||++.. .....+.....+ ...+.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL--RPLYNFESQHSMINNSNSIRSVK 240 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT--EEEEEEECCC---CCCCCEEEEE
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC--ceeEEEeccccccccCCccceEE
Confidence 55554 443 24456778999999 9999999999999999863 222222221113 56788999
Q ss_pred EccCCCEEEEEeCC---CeEEEEECCCCeeeeeecccc----------cCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 203 FSADGKYILISTNG---SIIRTFDAYNGQCLQTLAGFL----------NNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 203 ~s~~~~~l~~~~~~---~~i~i~d~~~~~~~~~~~~~~----------~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
|+|++.+|++++.+ +.|++||+++++.+..+.... .+...+.+++|+|++++|++|+.||.|++||+
T Consensus 241 ~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 241 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred ECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 99999999999999 999999999998888776510 04567889999999999999999999999999
Q ss_pred CCCeeEEEeCC-----CC---------------CCCeEEEEeCCCC----------cEEEeee--ceeEEecc
Q psy16316 270 EKGFKVCVLDA-----DH---------------PSPVQTIQFNPKF----------NMMASAC--TNLAFWIP 310 (335)
Q Consensus 270 ~~~~~~~~~~~-----~h---------------~~~v~~v~~sp~~----------~~~~s~~--~~~~~w~~ 310 (335)
.++.....+.. .| ..+|++++|+|++ +++++++ +.+++|..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 321 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred CCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 99888777751 46 8999999999998 7888886 56899975
No 23
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.2e-39 Score=284.29 Aligned_cols=248 Identities=17% Similarity=0.224 Sum_probs=217.7
Q ss_pred ceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
+...+.+|...|.+++|++++.+++||+.|++|++||+++++....+..+...+..++|++++. .+++++.|+.+++|
T Consensus 72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~ 149 (321)
T 3ow8_A 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIF 149 (321)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSS--EEEEECTTSEEEEE
T ss_pred eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEE
Confidence 3456899999999999999999999999999999999999998888888888888999998765 45667789999999
Q ss_pred EcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEcCCe
Q psy16316 93 SLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDT 171 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~ 171 (335)
++.+++....+..|...|.+++|+|++++|++|+.|+.|++||++++++...+. +...+..++|+|++.++++|+.|++
T Consensus 150 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~ 229 (321)
T 3ow8_A 150 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY 229 (321)
T ss_dssp ETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC
T ss_pred EcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe
Confidence 999999999999999999999999999999999999999999999887765553 3445677899999999999999999
Q ss_pred EEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCC
Q psy16316 172 IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251 (335)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 251 (335)
|++||++... . ......+...+.+++|+|++++|++++.|+.|++||+.+++++..+.+ +...+.+++|+|+
T Consensus 230 i~iwd~~~~~--~---~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---h~~~v~~v~~s~~ 301 (321)
T 3ow8_A 230 IKIYDVQHAN--L---AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD---HQDQVWGVKYNGN 301 (321)
T ss_dssp EEEEETTTCC--E---EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEECTT
T ss_pred EEEEECCCcc--e---eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC---CCCcEEEEEECCC
Confidence 9999997632 1 122334566788999999999999999999999999999999888765 4566889999999
Q ss_pred CcEEEEEeCCCcEEEEECC
Q psy16316 252 SKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iwd~~ 270 (335)
+++|++++.|+.|++||..
T Consensus 302 g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 302 GSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSEEEEEETTCCEEEEECC
T ss_pred CCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999963
No 24
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.4e-39 Score=312.34 Aligned_cols=289 Identities=19% Similarity=0.258 Sum_probs=234.8
Q ss_pred cccceeeeccCCccEEEEEECCCC-CEEEEecCCCeEEEEEccCCc-----ceeeeecccccceEEEEecCCCeeEEeec
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGT-----NKRTVFSKKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
.+.+...+++|++.|++++|+|++ .+|+|||.|++|+|||+.... ....+.+|...|..++|++++. .++++
T Consensus 371 ~l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sg 448 (694)
T 3dm0_A 371 GLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSG 448 (694)
T ss_dssp SSEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEE
T ss_pred ccchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEE
Confidence 356667899999999999999875 799999999999999997643 3456678889999999998765 56677
Q ss_pred CCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE----EecCCcceEEECCC
Q psy16316 84 KIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM----HVSGSRPIAAFDPE 159 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~----~~~~~~~~~~~~~~ 159 (335)
+.|++|++||+.+++.++.+.+|...|.+++|+|++++|+||+.|++|++||+......... .+...+.++.|+|+
T Consensus 449 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 449 SWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred eCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence 78999999999999999999999999999999999999999999999999998654322211 12233567889998
Q ss_pred C--CEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc
Q psy16316 160 G--LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 160 ~--~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 237 (335)
+ ..+++++.|++|++||++... . ......+...+.+++|+|++++|++++.|+.|++||+.+++++..+..
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~--~---~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-- 601 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCK--L---RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-- 601 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCC--E---EEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC--
T ss_pred CCcceEEEEeCCCeEEEEECCCCc--E---EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC--
Confidence 6 689999999999999997632 1 122344566789999999999999999999999999999988776643
Q ss_pred cCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCC------------------CCCCeEEEEeCCCCcEEE
Q psy16316 238 NNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD------------------HPSPVQTIQFNPKFNMMA 299 (335)
Q Consensus 238 ~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~------------------h~~~v~~v~~sp~~~~~~ 299 (335)
...+.+++|+|++.+|++++. +.|++||+.++.....+... +...|++++|||++.+|+
T Consensus 602 --~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~ 678 (694)
T 3dm0_A 602 --NSVIHALCFSPNRYWLCAATE-HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF 678 (694)
T ss_dssp --SSCEEEEEECSSSSEEEEEET-TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEE
T ss_pred --CCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE
Confidence 345788999999988888764 56999999988766554321 122478999999999999
Q ss_pred eee--ceeEEecc
Q psy16316 300 SAC--TNLAFWIP 310 (335)
Q Consensus 300 s~~--~~~~~w~~ 310 (335)
+|+ +.|++|..
T Consensus 679 sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 679 SGYTDGVIRVWGI 691 (694)
T ss_dssp EEETTSEEEEEEC
T ss_pred EEcCCCeEEEEec
Confidence 996 56999975
No 25
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.2e-40 Score=297.96 Aligned_cols=249 Identities=23% Similarity=0.392 Sum_probs=217.5
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
.++.+.+++|.+.|.+++|+|+|++|+|||.|++|+|||++++++...+.+|...+..++|.+++. .+++++.|++|+
T Consensus 140 ~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~ 217 (410)
T 1vyh_C 140 GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD--HIVSASRDKTIK 217 (410)
T ss_dssp CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSS--EEEEEETTSEEE
T ss_pred CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEE
Confidence 456678999999999999999999999999999999999999999888889999999999998765 456677899999
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCC----------
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPE---------- 159 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~---------- 159 (335)
+||+.++.++..+.+|...|.++.++|++.+|++|+.|++|++||++++.+...+ .+...+..+.|+|+
T Consensus 218 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 297 (410)
T 1vyh_C 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 297 (410)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC
T ss_pred EEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc
Confidence 9999999999999999999999999999999999999999999999988876554 33445566788875
Q ss_pred ----------CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCee
Q psy16316 160 ----------GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC 229 (335)
Q Consensus 160 ----------~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~ 229 (335)
+.++++|+.|++|++||+++.. .. .....+...+.+++|+|++++|++++.|+.|++||+.++++
T Consensus 298 ~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~--~~---~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 298 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CL---MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 372 (410)
T ss_dssp SCC-------CCEEEEEETTSEEEEEETTTTE--EE---EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC
T ss_pred cccccccCCCCCEEEEEeCCCeEEEEECCCCc--eE---EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Confidence 6789999999999999997632 22 22234556788999999999999999999999999999998
Q ss_pred eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 230 LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
+..+.+ |...|.+++|+|++++|++|+.||+|++|+.
T Consensus 373 ~~~~~~---h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 373 MKTLNA---HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CEEEEC---CSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEcC---CCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 888765 4556889999999999999999999999985
No 26
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.4e-39 Score=296.71 Aligned_cols=296 Identities=21% Similarity=0.320 Sum_probs=228.3
Q ss_pred cccceeeecc------CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc-----------ceeeeeccc---------
Q psy16316 10 SYKVAKLFRE------NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT-----------NKRTVFSKK--------- 63 (335)
Q Consensus 10 ~~~~~~~~~~------h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~-----------~~~~~~~~~--------- 63 (335)
.++..+.|.. |.+.|++++|+|+|.+||+|+.||+|+|||++++. ....+.+|.
T Consensus 11 ~w~~~q~~~~~~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 90 (447)
T 3dw8_B 11 QWCFSQVKGAVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSL 90 (447)
T ss_dssp CCEEEECCSCSSSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTE
T ss_pred eEEEEEecccccccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccc
Confidence 3455555554 68999999999999999999999999999998876 355666776
Q ss_pred ---ccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE---------------------------------------e
Q psy16316 64 ---YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI---------------------------------------R 101 (335)
Q Consensus 64 ---~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~---------------------------------------~ 101 (335)
..|..++|.++.....+++++.|++|++|++.++... +
T Consensus 91 ~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
T 3dw8_B 91 EIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRR 170 (447)
T ss_dssp EECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEE
T ss_pred cccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceE
Confidence 7799999999875445566678999999999775432 1
Q ss_pred e-ecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCC-CCceeEE--------EecCCcceEEECCCC-CEEEEEEcCC
Q psy16316 102 Y-FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS-PNCQGIM--------HVSGSRPIAAFDPEG-LIFGVGVNSD 170 (335)
Q Consensus 102 ~-~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~-~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~d~ 170 (335)
. ..+|...|.+++|+|++++|++| .|++|++||+++ ..+...+ .+...+..+.|+|++ .++++|+.|+
T Consensus 171 ~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg 249 (447)
T 3dw8_B 171 IFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG 249 (447)
T ss_dssp EECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS
T ss_pred EeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC
Confidence 2 46899999999999999999999 799999999984 3333322 223445678999998 9999999999
Q ss_pred eEEEEEccCCCCCc--eeeEEeccCCC------------ccceEEEEccCCCEEEEEeCCCeEEEEECCC-Ceeeeeecc
Q psy16316 171 TIKLYDVRSFDKGP--FSNFKFAAEKE------------CDWTGIKFSADGKYILISTNGSIIRTFDAYN-GQCLQTLAG 235 (335)
Q Consensus 171 ~v~iwd~~~~~~~~--~~~~~~~~~~~------------~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~ 235 (335)
+|++||++...... ...+ ..+. ..+.+++|+|++++|++++. +.|++||+++ ++++..+.+
T Consensus 250 ~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~ 325 (447)
T 3dw8_B 250 TIRLCDMRASALCDRHSKLF---EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQV 325 (447)
T ss_dssp CEEEEETTTCSSSCTTCEEE---CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEES
T ss_pred eEEEEECcCCccccceeeEe---ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeec
Confidence 99999998743210 1112 1222 26789999999999999998 9999999997 777777776
Q ss_pred cccCCC------------CceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeC------------------------
Q psy16316 236 FLNNKG------------CPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD------------------------ 279 (335)
Q Consensus 236 ~~~~~~------------~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~------------------------ 279 (335)
|..... .+..++|+|++++|++|+.||.|++||+.++.......
T Consensus 326 ~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (447)
T 3dw8_B 326 HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKK 405 (447)
T ss_dssp CGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCT
T ss_pred cccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccc
Confidence 543221 13348999999999999999999999998876553221
Q ss_pred -------CCCCCCeEEEEeCCCCcEEEeeec-eeEEecc
Q psy16316 280 -------ADHPSPVQTIQFNPKFNMMASACT-NLAFWIP 310 (335)
Q Consensus 280 -------~~h~~~v~~v~~sp~~~~~~s~~~-~~~~w~~ 310 (335)
..+...|..++|||+++++|+++. .+.+|..
T Consensus 406 ~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 406 DEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQD 444 (447)
T ss_dssp TCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEEC
T ss_pred ccccccccccCCceeEEEECCCCCEEEEEecceeeeecc
Confidence 134567899999999999998875 5777753
No 27
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.3e-39 Score=285.04 Aligned_cols=249 Identities=23% Similarity=0.363 Sum_probs=212.1
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc----ceeeeecccccceEEEEecCCCeeEEeecCCC
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT----NKRTVFSKKYGVDLIRFTHAKQAAIHASTKID 86 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 86 (335)
.+....+..|...|.+++|+|+|++|++|+.|+++++||+.+.+ ....+.+|...+..+.|.++.. +++++.|
T Consensus 87 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d 163 (340)
T 1got_B 87 TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGD 163 (340)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETT
T ss_pred CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECC
Confidence 44567788999999999999999999999999999999998764 3345667888899999987653 4566779
Q ss_pred CeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEE
Q psy16316 87 DTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 165 (335)
++|++||+.+++.+..+.+|...|.+++|+|+++++++|+.|++|++||++++.+...+. +...+..++|+|++.++++
T Consensus 164 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s 243 (340)
T 1got_B 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243 (340)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988766553 3445677899999999999
Q ss_pred EEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceE
Q psy16316 166 GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLE 245 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 245 (335)
|+.|++|++||++... ....+. .......+.+++|+|++++|++++.|+.|++||+.+++....+.+ |...|.+
T Consensus 244 ~s~d~~v~iwd~~~~~--~~~~~~-~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~---h~~~v~~ 317 (340)
T 1got_B 244 GSDDATCRLFDLRADQ--ELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG---HDNRVSC 317 (340)
T ss_dssp EETTSCEEEEETTTTE--EEEEEC-CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEE
T ss_pred EcCCCcEEEEECCCCc--EEEEEc-cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeec---CCCcEEE
Confidence 9999999999998632 111111 122334678999999999999999999999999999988887765 4567889
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEE
Q psy16316 246 ASFTPDSKYVISGSTDGRIHIWN 268 (335)
Q Consensus 246 ~~~sp~~~~l~tgs~dg~v~iwd 268 (335)
++|+|++++||+|+.|+.|++||
T Consensus 318 ~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 318 LGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999996
No 28
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.6e-39 Score=279.57 Aligned_cols=255 Identities=17% Similarity=0.178 Sum_probs=204.0
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCC--cceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELG--TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
..+.+|++.|++++|+|+|++||||+.|++|+|||++.+ +....+.+|...|..++|.++....++++++.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 467899999999999999999999999999999999754 556778889999999999865444577888899999999
Q ss_pred EcCCCc--eEeeecCCCCCeEEEEECCC--CCEEEEeeCCCcEEEeecCCCCce--eEE-EecCCcceEEECCC------
Q psy16316 93 SLHDNK--YIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKTVRLWDLRSPNCQ--GIM-HVSGSRPIAAFDPE------ 159 (335)
Q Consensus 93 ~~~~~~--~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~i~vWd~~~~~~~--~~~-~~~~~~~~~~~~~~------ 159 (335)
|+.+++ .+..+.+|...|.+++|+|+ +++|++|+.|++|++||++++... ..+ .+...+..+.|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998874 56678899999999999997 789999999999999999876422 111 23334556788886
Q ss_pred -------CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC---CEEEEEeCCCeEEEEECCCCee
Q psy16316 160 -------GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG---KYILISTNGSIIRTFDAYNGQC 229 (335)
Q Consensus 160 -------~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~~~~~~~~i~i~d~~~~~~ 229 (335)
+.++++|+.|++|++||++.... ..........+...+.+++|+|++ .+|++++.|+.|++||+.+...
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~-~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~ 241 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG 241 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCc-eEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence 57999999999999999986321 111222234566678999999995 8999999999999999887431
Q ss_pred --eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 230 --LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 230 --~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
...+.....+...+.+++|+|++++||+++.|+.|++|+..
T Consensus 242 ~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 11121112345678899999999999999999999999975
No 29
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.1e-39 Score=286.85 Aligned_cols=292 Identities=15% Similarity=0.259 Sum_probs=229.6
Q ss_pred ceeeeccCCccEEEEEECCCCC-EEEEecC---CCeEEEEEccCCcceeee-ecccccceEEEEecCC-CeeEEeecCCC
Q psy16316 13 VAKLFRENTDKITSIDYSADGL-LLISCSE---DDQIVIYDCELGTNKRTV-FSKKYGVDLIRFTHAK-QAAIHASTKID 86 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~~g~-~lasgs~---Dg~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~d 86 (335)
+.+.+++|.+.|++++|+|++. ++++|+. ||+|+|||+++++..... ..+...+..++|.++. +...+++++.|
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 4456789999999999999996 5567776 999999999988765443 4677889999999874 13455666789
Q ss_pred CeEEEEEcCCCc-eEeeecCCCCCeEEEE------ECCCCCEEEEeeCCCcEEEeecCCCC-ceeEEEe-cC----Ccce
Q psy16316 87 DTVRYLSLHDNK-YIRYFPGHTKKVNSLC------LSPIDDTFISGSYDKTVRLWDLRSPN-CQGIMHV-SG----SRPI 153 (335)
Q Consensus 87 ~~i~~~~~~~~~-~~~~~~~H~~~V~~~~------~~~~~~~l~s~s~D~~i~vWd~~~~~-~~~~~~~-~~----~~~~ 153 (335)
+.+++||+.+++ .+..+.+|...|.+++ |+|++++|++++.|+.|++||++++. ....+.. .+ ....
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT 169 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence 999999999887 8889999999999995 46789999999999999999999876 3443322 11 2333
Q ss_pred EE----ECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc---CCCEEEEEeCCCeEEEEECCC
Q psy16316 154 AA----FDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA---DGKYILISTNGSIIRTFDAYN 226 (335)
Q Consensus 154 ~~----~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~~~~~~~~i~i~d~~~ 226 (335)
+. ++|++.++++++.|+.|++||++.... .....+...+.+++|+| ++.++++++.++.|++||+++
T Consensus 170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL------RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp EEEECCCC-CCCEEEEEETTSEEEEEETTTTEE------EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred EEEEeccCCCCCEEEEEccCCeEEEEECccCce------eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 44 679999999999999999999986321 11123345678999999 999999999999999999988
Q ss_pred Ceeeeeec--ccccCCCCceEEEEcCCCc-EEEEEeCCCcEEEEECCCCe-------------------eEEEeCCCCCC
Q psy16316 227 GQCLQTLA--GFLNNKGCPLEASFTPDSK-YVISGSTDGRIHIWNAEKGF-------------------KVCVLDADHPS 284 (335)
Q Consensus 227 ~~~~~~~~--~~~~~~~~v~~~~~sp~~~-~l~tgs~dg~v~iwd~~~~~-------------------~~~~~~~~h~~ 284 (335)
++....+. ....+...+.+++|+|+++ +|++|+.||.|++||+..+. .+..+ ..|.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~ 322 (357)
T 3i2n_A 244 QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV-TLSTQ 322 (357)
T ss_dssp EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE-ECCSS
T ss_pred CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc-ccCCC
Confidence 76655443 1224567789999999998 89999999999999987532 33334 45899
Q ss_pred CeEEEEeCCCCcEEE-eee--ceeEEeccc
Q psy16316 285 PVQTIQFNPKFNMMA-SAC--TNLAFWIPT 311 (335)
Q Consensus 285 ~v~~v~~sp~~~~~~-s~~--~~~~~w~~~ 311 (335)
+|++++|+|++++++ +++ +.+++|..+
T Consensus 323 ~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 323 PISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp CEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 999999999999888 675 679999764
No 30
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8.9e-38 Score=275.04 Aligned_cols=279 Identities=12% Similarity=0.186 Sum_probs=231.9
Q ss_pred eccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee-----cccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-----SKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
..+|.+.|++++|+|+|++|++++ ||+|++||+++++....+. .+...+..++|.+++. .+++++.|+.+++
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSI 123 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEE
Confidence 348999999999999999999999 9999999998876433322 5677899999998765 4455567999999
Q ss_pred EEcCCCc--eEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEc
Q psy16316 92 LSLHDNK--YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 92 ~~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 168 (335)
||+.+++ ....+.+|...|.+++|+|+++.|++++.|+.|++||+++++....+. +......+.++|++.++++++.
T Consensus 124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence 9999876 667788999999999999999999999999999999999887665553 3445667889999999999999
Q ss_pred CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEE
Q psy16316 169 SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF 248 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 248 (335)
|+.|++||++... ....+ .....+.+++|+|+++++++++.++.|++||+.+++... + ..+...+.+++|
T Consensus 204 dg~i~~~d~~~~~--~~~~~----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~---~~~~~~v~~~~~ 273 (337)
T 1gxr_A 204 DNTVRSWDLREGR--QLQQH----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-L---HLHESCVLSLKF 273 (337)
T ss_dssp TSEEEEEETTTTE--EEEEE----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-E---CCCSSCEEEEEE
T ss_pred CCcEEEEECCCCc--eEeee----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-E---cCCccceeEEEE
Confidence 9999999998632 12221 234567889999999999999999999999999886542 3 235567889999
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 249 TPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 249 sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
+|++++|++++.||.|++||+.++...... .|..+|.+++|+|+++++++++ +.+++|.+
T Consensus 274 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCCEEEEecCCCcEEEEECCCCeEEEEe--cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 999999999999999999999988776543 4788999999999999999886 56888864
No 31
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.2e-38 Score=285.49 Aligned_cols=284 Identities=10% Similarity=0.081 Sum_probs=212.3
Q ss_pred CccEEEEEECCCCCEEEEecCCC-------eEEEEEccCCcce----------eeeecccccceEEEEecCCCeeE----
Q psy16316 21 TDKITSIDYSADGLLLISCSEDD-------QIVIYDCELGTNK----------RTVFSKKYGVDLIRFTHAKQAAI---- 79 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~Dg-------~i~lwd~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~---- 79 (335)
.-+|++++|+|||++||+||.|. .|++|+++.+... ..+..+...+.++++.. ...+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~--~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK--GIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET--TEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC--CEEEEEEC
Confidence 35799999999999999997644 5999998765421 12233444555555543 2222
Q ss_pred -----EeecCCCCeEEEEEcCCCceE----eee-----cCCCCCeEEEEECCCCCEEE--EeeCCCcEEEeecCCCCcee
Q psy16316 80 -----HASTKIDDTVRYLSLHDNKYI----RYF-----PGHTKKVNSLCLSPIDDTFI--SGSYDKTVRLWDLRSPNCQG 143 (335)
Q Consensus 80 -----~~~~~~d~~i~~~~~~~~~~~----~~~-----~~H~~~V~~~~~~~~~~~l~--s~s~D~~i~vWd~~~~~~~~ 143 (335)
+.+++.|+.+|+|++...... ... ..+...+.+++|+|+|++|+ +++.|++|++||+.++++..
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 224556899999998764321 111 23445689999999999876 45589999999999988887
Q ss_pred EEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCC----eE
Q psy16316 144 IMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS----II 219 (335)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~----~i 219 (335)
.+.+.+.+..++|+|+|+++++++.++ +.+|+..... .........+...+.+++|+|+++++++++.++ .+
T Consensus 172 ~~~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~---~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i 247 (365)
T 4h5i_A 172 EIETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGS---CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVL 247 (365)
T ss_dssp EEECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCC---EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEE
T ss_pred EeCCCCceEEEEEccCCceEEecccee-EEEEEeccCc---ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEE
Confidence 777777778899999999999998654 5566655422 111222334556688999999999999988766 68
Q ss_pred EEEECCCCeeee-eecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEE
Q psy16316 220 RTFDAYNGQCLQ-TLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMM 298 (335)
Q Consensus 220 ~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~ 298 (335)
++|++....... .......+...|.+++|+|||++||+|+.|++|+|||+.++..+..+..+|.++|++|+|||+|++|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~l 327 (365)
T 4h5i_A 248 TKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYV 327 (365)
T ss_dssp EEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEE
T ss_pred eecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEE
Confidence 899987765422 1222334566788999999999999999999999999999988877667899999999999999999
Q ss_pred Eeee--ceeEEecc
Q psy16316 299 ASAC--TNLAFWIP 310 (335)
Q Consensus 299 ~s~~--~~~~~w~~ 310 (335)
|||+ ++|++|..
T Consensus 328 aS~S~D~tvrvw~i 341 (365)
T 4h5i_A 328 ASVSAANTIHIIKL 341 (365)
T ss_dssp EEEETTSEEEEEEC
T ss_pred EEEeCCCeEEEEEc
Confidence 9997 67999975
No 32
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-38 Score=274.52 Aligned_cols=287 Identities=17% Similarity=0.228 Sum_probs=234.5
Q ss_pred hcccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
..+++.+.|++|.+.|+++.| |++.+|++|+.||+|++||++++.....+..+...+..++|.+++. .+++++.|+.
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~ 82 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKE--LLLFGGKDTM 82 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTT--EEEEEETTSC
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCC--EEEEecCCCe
Confidence 467888999999999999999 9999999999999999999999988888888899999999998765 4555667999
Q ss_pred EEEEEcCCC---ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECC-CCCEE
Q psy16316 89 VRYLSLHDN---KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDP-EGLIF 163 (335)
Q Consensus 89 i~~~~~~~~---~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~ 163 (335)
+++|++... +.+..+.+|...|.+++| +++.|++++.|+.|++|| .+.....+ .+......+.+.| ++.++
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred EEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEE
Confidence 999998654 567788999999999999 567999999999999999 33333333 2333344455555 89999
Q ss_pred EEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCc
Q psy16316 164 GVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCP 243 (335)
Q Consensus 164 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v 243 (335)
++++.|+.+++||... .. ......+...+.+++|+|++. +++++.++.|++||+++++.+..+.. +...+
T Consensus 159 ~~~~~d~~i~i~d~~~----~~--~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i 228 (313)
T 3odt_A 159 LTASADKTIKLWQNDK----VI--KTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEG---HESFV 228 (313)
T ss_dssp EEEETTSCEEEEETTE----EE--EEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEEC---CSSCE
T ss_pred EEEECCCCEEEEecCc----eE--EEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhc---CCceE
Confidence 9999999999999432 11 122233556788999999998 88999999999999999988887765 45668
Q ss_pred eEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEee-eceeEEecccccc
Q psy16316 244 LEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA-CTNLAFWIPTYLS 314 (335)
Q Consensus 244 ~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~-~~~~~~w~~~~~~ 314 (335)
.+++|+|++ .|++|+.||.|++||+.++.....+. .|..+|.+++|+|++.+++.+ ++.+++|.+...+
T Consensus 229 ~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 229 YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT-LPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp EEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGG
T ss_pred EEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe-ccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCc
Confidence 899999999 68999999999999999988777775 588899999999999866544 3679999865443
No 33
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.4e-37 Score=294.13 Aligned_cols=284 Identities=25% Similarity=0.409 Sum_probs=235.4
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
.++.+.+.+|...|.++.|+|+|++|++++.|++|++||.+ ++....+.+|...+..++|+++.. .+++++.|++++
T Consensus 252 ~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~~~d~~i~ 328 (577)
T 2ymu_A 252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQ--TIASASDDKTVK 328 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEE
T ss_pred CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCC--EEEEEeCCCeEE
Confidence 45667889999999999999999999999999999999964 556667778888999999988765 455666799999
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEcC
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNS 169 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d 169 (335)
+||+... .+..+.+|...|.+++|+|+++.|++++.|+.|++||.. ++....+ .+...+..++|+|+++++++++.|
T Consensus 329 ~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d 406 (577)
T 2ymu_A 329 LWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 406 (577)
T ss_dssp EEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCC
Confidence 9997654 567788999999999999999999999999999999964 3443333 334556678999999999999999
Q ss_pred CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEc
Q psy16316 170 DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~s 249 (335)
+.|++||... ... .....+...+.+++|+|++++|++++.|+.|++||. +++.+..+.+ +...+.+++|+
T Consensus 407 ~~v~~~~~~~---~~~---~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~---~~~~v~~~~~s 476 (577)
T 2ymu_A 407 KTVKLWNRNG---QLL---QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTG---HSSSVRGVAFS 476 (577)
T ss_dssp SEEEEECTTC---CEE---EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEEC---CSSCEEEEEEC
T ss_pred CEEEEEeCCC---CEE---EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcC---CCCCEEEEEEc
Confidence 9999999642 122 222345567889999999999999999999999996 4556666655 45668899999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 250 PDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 250 p~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
|++++||+++.|+.|++||. ++.....+. +|..+|++++|+|++++||+++ +.+++|..+
T Consensus 477 pd~~~las~~~d~~i~iw~~-~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 477 PDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp TTSCEEEEEETTSEEEEEET-TSCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred CCCCEEEEEeCCCEEEEEcC-CCCEEEEEe-CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 99999999999999999996 566666664 6999999999999999999986 569999753
No 34
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.6e-38 Score=280.71 Aligned_cols=289 Identities=16% Similarity=0.258 Sum_probs=230.7
Q ss_pred eeccCCccEEEEEECCC----CCEEEEecCCCeEEEEEccCCcceeeeec-----ccccceEEEEecCCC--eeEEeecC
Q psy16316 16 LFRENTDKITSIDYSAD----GLLLISCSEDDQIVIYDCELGTNKRTVFS-----KKYGVDLIRFTHAKQ--AAIHASTK 84 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~----g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~ 84 (335)
...+|.++|++++|+|+ ...+++++.++.|++||+.+++....+.. +...+..++|+++.. ..++++++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 44589999999999984 45566666677999999998877666554 335689999998855 56777888
Q ss_pred CCCeEEEEEcCCCceEeeecCCCCCeEEEEECC-CCCEEEEeeCCCcEEEeecCCCCceeEE----EecCCcceEEECCC
Q psy16316 85 IDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRSPNCQGIM----HVSGSRPIAAFDPE 159 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~~~~~----~~~~~~~~~~~~~~ 159 (335)
.|+.|++||+.+++.+..+.+|...|.+++|+| ++++|++|+.|+.|++||+++++....+ .+...+..+.|+|+
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence 899999999999999999999999999999999 8999999999999999999988776655 24445667889999
Q ss_pred CCEEEEEEcCCeEEEEEccCCCCCce-----------------------eeEEeccCCCccceEEEEccCCCEEEEEeCC
Q psy16316 160 GLIFGVGVNSDTIKLYDVRSFDKGPF-----------------------SNFKFAAEKECDWTGIKFSADGKYILISTNG 216 (335)
Q Consensus 160 ~~~~~~~~~d~~v~iwd~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~ 216 (335)
+.++++++.|+.|++||++....... ........+...+.+++|+ ++++++++.+
T Consensus 173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d 250 (366)
T 3k26_A 173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE 250 (366)
T ss_dssp SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence 99999999999999999875211000 0011111245567889998 7799999999
Q ss_pred CeEEEEECCCCee--------------eeeecccccCCCCceEEEEcCC--CcEEEEEeCCCcEEEEECCCCe----eEE
Q psy16316 217 SIIRTFDAYNGQC--------------LQTLAGFLNNKGCPLEASFTPD--SKYVISGSTDGRIHIWNAEKGF----KVC 276 (335)
Q Consensus 217 ~~i~i~d~~~~~~--------------~~~~~~~~~~~~~v~~~~~sp~--~~~l~tgs~dg~v~iwd~~~~~----~~~ 276 (335)
+.|++||+.+++. +..+. .+...+.+++|+|+ +++|++|+.||.|++||+.++. ...
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 327 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFD---YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCT 327 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE---CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEE
T ss_pred CEEEEEeCCCccccccccccCCcchheecccc---ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccce
Confidence 9999999987644 33333 34556778999999 9999999999999999998764 333
Q ss_pred EeCCCC--CCCeEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 277 VLDADH--PSPVQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 277 ~~~~~h--~~~v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
.+. .| ..+|++++|+|++++|++++ +.+++|.+
T Consensus 328 ~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 328 TLT-HHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp EEC-CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEc-ccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 443 35 78999999999999999997 46888864
No 35
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.1e-38 Score=282.13 Aligned_cols=292 Identities=13% Similarity=0.149 Sum_probs=235.4
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc--ceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT--NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
+.++.|.++|++++|+|+|++||+|+.|++|++||+++++ ....+..|...+..++|.+++. .+++++.|+.+++|
T Consensus 2 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 2 AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVW 79 (372)
T ss_dssp CEEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred ceecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEE
Confidence 3567799999999999999999999999999999999987 7777888889999999998665 44556679999999
Q ss_pred EcCCCceEe--eecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeE---E--EecCCcceEEECCCCCEEEE
Q psy16316 93 SLHDNKYIR--YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGI---M--HVSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 93 ~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~ 165 (335)
|+.+++... .+.+|...|.+++|+|++++|++++.|+.|++||++.+..... . .+...+..+.|+|++.++++
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence 998887544 3478999999999999999999999999999999988764221 1 12344567889999999999
Q ss_pred EEcCCeEEEEEccCCCC-------------CceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeee
Q psy16316 166 GVNSDTIKLYDVRSFDK-------------GPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQT 232 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 232 (335)
++.|+.+++||++.... ...........+...+.+++|+|++++|++++.|+.|++||+++++++..
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 239 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 239 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEE
Confidence 99999999999752110 00111222234556788999999999999999999999999999988887
Q ss_pred ecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCC--Cee--------------------------------E---
Q psy16316 233 LAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEK--GFK--------------------------------V--- 275 (335)
Q Consensus 233 ~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~--~~~--------------------------------~--- 275 (335)
+.. +...+.+++|+|++++|++| .|+.|++|++.+ +.- .
T Consensus 240 ~~~---~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (372)
T 1k8k_C 240 LAS---ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA 315 (372)
T ss_dssp EEC---SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC------
T ss_pred Ecc---CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCc
Confidence 765 34568899999999999888 899999999877 420 0
Q ss_pred ---EEeCCCCCCCeEEEEeC-CCC---cEEEeee--ceeEEecccc
Q psy16316 276 ---CVLDADHPSPVQTIQFN-PKF---NMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 276 ---~~~~~~h~~~v~~v~~s-p~~---~~~~s~~--~~~~~w~~~~ 312 (335)
..+..+|.++|++++|+ +++ .++++++ +.+++|..+.
T Consensus 316 ~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 316 AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp ---CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 22334799999999976 666 8999997 5699998643
No 36
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.8e-38 Score=279.26 Aligned_cols=244 Identities=14% Similarity=0.213 Sum_probs=200.2
Q ss_pred eccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceee----eecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT----VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
...|...|.+++|+|++ .|++|+.||+|+|||+++++.... ..+|...|..++|++++. .+++++.|++|++|
T Consensus 78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iw 154 (344)
T 4gqb_B 78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVW 154 (344)
T ss_dssp EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEE
Confidence 34567789999999986 688999999999999999876543 346788899999998765 56677789999999
Q ss_pred EcCCCceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEE---ecCCcceEEECC-CCCEEEEEE
Q psy16316 93 SLHDNKYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMH---VSGSRPIAAFDP-EGLIFGVGV 167 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~ 167 (335)
|+.++++++.+.+|.+.|++++|+|++ .+|+||+.|++|++||++++++...+. .......++++| ++.++++|+
T Consensus 155 d~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~ 234 (344)
T 4gqb_B 155 DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD 234 (344)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE
T ss_pred ECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec
Confidence 999999999999999999999999987 478999999999999999988765442 223345678888 567899999
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC-CEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEE
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG-KYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA 246 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 246 (335)
.|++|++||+++.+ ....+ ..+...+.+++|+|++ ++|++++.|+.|++||+.++++++ +. .|...|.++
T Consensus 235 ~dg~v~~wd~~~~~--~~~~~---~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~---~H~~~V~~v 305 (344)
T 4gqb_B 235 ENGTVSLVDTKSTS--CVLSS---AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ---AHRDFVRDA 305 (344)
T ss_dssp TTSEEEEEESCC----CCEEE---ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC---CCSSCEEEE
T ss_pred cCCcEEEEECCCCc--EEEEE---cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec---CCCCCEEEE
Confidence 99999999998643 22222 3455678999999998 578999999999999999987654 33 356778999
Q ss_pred EEcCCCc-EEEEEeCCCcEEEEECCCC
Q psy16316 247 SFTPDSK-YVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 247 ~~sp~~~-~l~tgs~dg~v~iwd~~~~ 272 (335)
+|+|+++ +|++||.|++|++|++.+.
T Consensus 306 ~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 306 TWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 9999986 6789999999999998754
No 37
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7e-38 Score=275.43 Aligned_cols=249 Identities=17% Similarity=0.288 Sum_probs=207.4
Q ss_pred ceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
+.+.|++|.+.|.++.|+|+|++|+|||.|++|+|||+++++....+.+|...+..++|.++.. .+++++.|++|++|
T Consensus 57 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vw 134 (319)
T 3frx_A 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVW 134 (319)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC--EEEEEETTSCEEEE
T ss_pred cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999988654 56677789999999
Q ss_pred EcCCCceEeeecCCCCCeEEEEECCC------CCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEE
Q psy16316 93 SLHDNKYIRYFPGHTKKVNSLCLSPI------DDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~V~~~~~~~~------~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 165 (335)
|+. ++.+..+.+|...|.++.++|. +..+++++.|++|++||+++.+....+ .+...+..++++|++.++++
T Consensus 135 d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s 213 (319)
T 3frx_A 135 TIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213 (319)
T ss_dssp ETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEE
T ss_pred ECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEE
Confidence 996 4567888999999999999985 348999999999999999987655443 23455667899999999999
Q ss_pred EEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc-----cCC
Q psy16316 166 GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL-----NNK 240 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-----~~~ 240 (335)
|+.|++|++||++... ....+. ....+.+++|+|++.++++++.+ .+++|++..+.....+.... .+.
T Consensus 214 ~~~dg~i~iwd~~~~~--~~~~~~----~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 286 (319)
T 3frx_A 214 AGKDGEIMLWNLAAKK--AMYTLS----AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAE 286 (319)
T ss_dssp EETTCEEEEEETTTTE--EEEEEE----CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGC
T ss_pred EeCCCeEEEEECCCCc--EEEEec----CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcC
Confidence 9999999999997632 222222 23467899999999999888755 59999998877666554321 234
Q ss_pred CCceEEEEcCCCcEEEEEeCCCcEEEEECCC
Q psy16316 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 241 ~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~ 271 (335)
..+.+++|+|||++|++|+.|+.|++||+.+
T Consensus 287 ~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 287 PHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 4577899999999999999999999999864
No 38
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-38 Score=288.39 Aligned_cols=292 Identities=12% Similarity=0.171 Sum_probs=228.6
Q ss_pred ccceeee-ccCCccEEEEEECC-CCCEEEEecCCCeEEEEEccC---Ccce--eeeecccccceEEEEecCCCeeEEeec
Q psy16316 11 YKVAKLF-RENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCEL---GTNK--RTVFSKKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 11 ~~~~~~~-~~h~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
.++...+ ++|.+.|++++|+| +|.+||||+.||+|+|||+.+ +... .....|...+..++|.++.. .++++
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~ 129 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFD--AFAVS 129 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSS--EEEEE
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCC--EEEEE
Confidence 3455677 89999999999999 999999999999999999977 4322 12235788899999997554 55667
Q ss_pred CCCCeEEEEEcC---CCceEeeecC------------CCCCeEEEE--ECCCCCEEEEeeCCCcEEEeecCCCCceeEEE
Q psy16316 84 KIDDTVRYLSLH---DNKYIRYFPG------------HTKKVNSLC--LSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH 146 (335)
Q Consensus 84 ~~d~~i~~~~~~---~~~~~~~~~~------------H~~~V~~~~--~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~ 146 (335)
+.|+.|++||+. .++.++.+.+ +...+.++. +++++++|++|+.|+.|++||++++++...+.
T Consensus 130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 789999999995 5555554443 445566666 55788999999999999999999988877664
Q ss_pred ---ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEc----cCCCEEEEEeCCCeE
Q psy16316 147 ---VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFS----ADGKYILISTNGSII 219 (335)
Q Consensus 147 ---~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~l~~~~~~~~i 219 (335)
+...+..++|+|++.++++|+.|++|++||++.. .....+ ...+...+.+++++ |++.+|++++.|+.|
T Consensus 210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~--~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i 285 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN--VLIRSW--SFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL 285 (437)
T ss_dssp CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT--EEEEEE--BCTTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc--cEEEEE--ecCCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence 3456777899999999999999999999999862 222221 22344567888554 568899999999999
Q ss_pred EEEECCCCeeeeeeccccc-----------------------CCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEE
Q psy16316 220 RTFDAYNGQCLQTLAGFLN-----------------------NKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVC 276 (335)
Q Consensus 220 ~i~d~~~~~~~~~~~~~~~-----------------------~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~ 276 (335)
++||++++++...+.++.. +...+.+++|+ ++++|++|+.|+.|++||+.++....
T Consensus 286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 286 TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred EEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence 9999999998887765421 34457788999 77999999999999999998876554
Q ss_pred EeCC------------------------------------CCCCCeEEEEeCCC--CcEEEeee--ceeEEec
Q psy16316 277 VLDA------------------------------------DHPSPVQTIQFNPK--FNMMASAC--TNLAFWI 309 (335)
Q Consensus 277 ~~~~------------------------------------~h~~~v~~v~~sp~--~~~~~s~~--~~~~~w~ 309 (335)
.+.. .|.+.|++++|+|+ +.++++|+ +.|++|.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 365 AVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 4432 28999999999988 78999997 5688884
No 39
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=276.92 Aligned_cols=287 Identities=17% Similarity=0.215 Sum_probs=229.0
Q ss_pred hcccceeeeccCCccEEEEEECCC---CCEEEEecCCCeEEEEEccC-Ccce-eeeecccccceEEEEecCCCeeEEeec
Q psy16316 9 RSYKVAKLFRENTDKITSIDYSAD---GLLLISCSEDDQIVIYDCEL-GTNK-RTVFSKKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 9 ~~~~~~~~~~~h~~~V~~v~~s~~---g~~lasgs~Dg~i~lwd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
.+++..+.+++|.+.|++++|+|+ |.+|++|+.||+|+|||+++ +... ..+..|...+..++|++++. .++++
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~ 104 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS--KVFTA 104 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSS--EEEEE
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCC--EEEEE
Confidence 467778889999999999999999 69999999999999999997 4444 56677889999999998655 45566
Q ss_pred CCCCeEEEEEcCCCceEeeecCCCCCeEEEEE--CCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCC
Q psy16316 84 KIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL--SPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGL 161 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~--~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (335)
+.|+.|++||+.+++.+. +.+|...|.+++| +|++++|++++.|+.|++||+++++....+.... ....+.+...
T Consensus 105 ~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~ 181 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE--RCYCADVIYP 181 (368)
T ss_dssp ETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS--CEEEEEEETT
T ss_pred cCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC--CceEEEecCC
Confidence 679999999999988776 5579999999999 8999999999999999999999988776665444 3344444556
Q ss_pred EEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCE----EEEEeCCCeEEEEECCCC---eeeeeec
Q psy16316 162 IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKY----ILISTNGSIIRTFDAYNG---QCLQTLA 234 (335)
Q Consensus 162 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~----l~~~~~~~~i~i~d~~~~---~~~~~~~ 234 (335)
.+++++.++.+.+||++.... .. .............+++.++... +++++.++.|++||++.. +....+.
T Consensus 182 ~~~~~~~~~~i~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 258 (368)
T 3mmy_A 182 MAVVATAERGLIVYQLENQPS-EF--RRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK 258 (368)
T ss_dssp EEEEEEGGGCEEEEECSSSCE-EE--EECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred eeEEEeCCCcEEEEEeccccc-hh--hhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence 888899999999999975321 11 1111222233455666655544 999999999999999887 3444554
Q ss_pred ccccC---------CCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece
Q psy16316 235 GFLNN---------KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304 (335)
Q Consensus 235 ~~~~~---------~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~ 304 (335)
.+... ...+.+++|+|++++|++|+.||.|++||+.++..+..+. .|..+|++++|+|++.++++++.+
T Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 259 CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CCSSCEEEEEECTTSSCEEEEECC
T ss_pred eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-CCCCCceEEEECCCCCeEEEEecc
Confidence 43321 1258899999999999999999999999999998887775 699999999999999999999754
No 40
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6e-38 Score=285.25 Aligned_cols=285 Identities=13% Similarity=0.183 Sum_probs=228.2
Q ss_pred eeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC
Q psy16316 16 LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 95 (335)
.+..| +.+....|+|+|++||+|+.||+|++||+++++....+..|...+..++|++++. .+++++.|+.|++||+.
T Consensus 93 ~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~ 169 (420)
T 3vl1_A 93 MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVK 169 (420)
T ss_dssp TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETT
T ss_pred EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCC
Confidence 34555 5566668899999999999999999999998888777678889999999998765 55667789999999999
Q ss_pred CCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec-------------------------CC
Q psy16316 96 DNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS-------------------------GS 150 (335)
Q Consensus 96 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-------------------------~~ 150 (335)
+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++++...+... ..
T Consensus 170 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence 99999999999999999999999999999999999999999988766554321 22
Q ss_pred cceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCC-EEEEEeCCCeEEEEECCCCee
Q psy16316 151 RPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK-YILISTNGSIIRTFDAYNGQC 229 (335)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~i~i~d~~~~~~ 229 (335)
...+.|+|++.++++++.|+.|++||++... . .......+...+.+++|+|++. +|++++.|+.|++||+++++.
T Consensus 250 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 325 (420)
T 3vl1_A 250 KNNLEFGTYGKYVIAGHVSGVITVHNVFSKE--Q--TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC 325 (420)
T ss_dssp CCTTCSSCTTEEEEEEETTSCEEEEETTTCC--E--EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred ccceEEcCCCCEEEEEcCCCeEEEEECCCCc--e--eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence 2335678999999999999999999998632 1 2222334556789999999999 999999999999999998754
Q ss_pred -eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCe---------eEEEeCCCCCCCeEEEEeCCCCc---
Q psy16316 230 -LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGF---------KVCVLDADHPSPVQTIQFNPKFN--- 296 (335)
Q Consensus 230 -~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~---------~~~~~~~~h~~~v~~v~~sp~~~--- 296 (335)
+..+..+ +...+..+ +.|++++|++++.|+.|++|++.... ....+ ..|.+.|.+++|+|+++
T Consensus 326 ~~~~~~~~--~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~g 401 (420)
T 3vl1_A 326 PVGEFLIN--EGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFL-VSNDDAVSQFCYVSDDESNG 401 (420)
T ss_dssp CSEEEEES--TTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEE-CCSSCCCCEEEEECCSSSSC
T ss_pred chhhhhcc--CCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEE-ccCCcceEEEEEccCCCCcc
Confidence 5555543 23344455 56688999999999999999987631 11122 45888999999999998
Q ss_pred -EEEeee-ceeEEeccc
Q psy16316 297 -MMASAC-TNLAFWIPT 311 (335)
Q Consensus 297 -~~~s~~-~~~~~w~~~ 311 (335)
++++|+ +.+.+|..+
T Consensus 402 ~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 402 EVLEVGKNNFCALYNLS 418 (420)
T ss_dssp EEEEEETTTEEEEEESC
T ss_pred eEEEEcCCceEEEEecc
Confidence 666664 568889753
No 41
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.2e-38 Score=280.02 Aligned_cols=251 Identities=16% Similarity=0.191 Sum_probs=194.5
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc--ceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT--NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
+.+.+|++.|++++|+|+|++|||||.|++|+|||++++. ....+.+|...|..++|.++.....+++++.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 4567999999999999999999999999999999998875 34567789999999999765334567778889999999
Q ss_pred EcCCC--ceEeeecCCCCCeEEEEECCC--CCEEEEeeCCCcEEEeecCCCCceeEE----EecCCcceEEECCC-----
Q psy16316 93 SLHDN--KYIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKTVRLWDLRSPNCQGIM----HVSGSRPIAAFDPE----- 159 (335)
Q Consensus 93 ~~~~~--~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~i~vWd~~~~~~~~~~----~~~~~~~~~~~~~~----- 159 (335)
|+.++ .....+.+|...|++++|+|+ +.+|++|+.|++|++||++.+...... .+......+.|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 99887 456778899999999999998 789999999999999999875321111 11223445677776
Q ss_pred ------------CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC----CEEEEEeCCCeEEEEE
Q psy16316 160 ------------GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG----KYILISTNGSIIRTFD 223 (335)
Q Consensus 160 ------------~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~l~~~~~~~~i~i~d 223 (335)
+.++++|+.|++|++||++.. ...........+...+.+++|+|++ .+|++++.|++|++|+
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~--~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~ 244 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED--GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTT--SCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCC--CccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence 468999999999999998642 1122223334566678999999987 8899999999999999
Q ss_pred CCCCe----eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 224 AYNGQ----CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 224 ~~~~~----~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
+.+.. ....+.. +...+.+++|+|++++||+|+.|+.|++|+..
T Consensus 245 ~~~~~~~~~~~~~~~~---~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 245 CDDASSNTWSPKLLHK---FNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSSTTCCCCBCCEEEE---CSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ccCccccchhhhhhhc---CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 87631 1122322 45678899999999999999999999999975
No 42
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.2e-37 Score=303.08 Aligned_cols=291 Identities=20% Similarity=0.298 Sum_probs=246.6
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
.+++.+.|.+|.+.|++++|+|+|++||+|+.||+|+|||+++++....+..|...+..++|++++.. +++++.|+.|
T Consensus 2 ~l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg~i 79 (814)
T 3mkq_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNW--IIVGSDDFRI 79 (814)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTE--EEEEETTSEE
T ss_pred CcccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCE--EEEEeCCCeE
Confidence 35678899999999999999999999999999999999999999998888889999999999997654 4555679999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCC-ceeEE-EecCCcceEEECC-CCCEEEEE
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN-CQGIM-HVSGSRPIAAFDP-EGLIFGVG 166 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~ 166 (335)
++||+.+++.+..+.+|.+.|.+++|+|+++.|++++.|++|++||+.++. ....+ .+...+..+.|+| ++..++++
T Consensus 80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (814)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence 999999999999999999999999999999999999999999999998763 33333 2344566788999 88999999
Q ss_pred EcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc--CCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCce
Q psy16316 167 VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA--DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 244 (335)
+.|++|++||++.... .... .......+..++|+| ++.++++++.++.|++||+.++++...+.+ +...+.
T Consensus 160 ~~dg~v~vwd~~~~~~--~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---~~~~v~ 232 (814)
T 3mkq_A 160 CLDRTVKVWSLGQSTP--NFTL--TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---HMSNVS 232 (814)
T ss_dssp ETTSEEEEEETTCSSC--SEEE--ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEEC---CSSCEE
T ss_pred eCCCeEEEEECCCCcc--eeEE--ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcC---CCCCEE
Confidence 9999999999976332 2222 223335677899999 999999999999999999999998887765 445678
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc--EEEeee-ceeEEecc
Q psy16316 245 EASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN--MMASAC-TNLAFWIP 310 (335)
Q Consensus 245 ~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~--~~~s~~-~~~~~w~~ 310 (335)
+++|+|++++|++|+.||.|++||..++.....+. .|..++++++|+|++. +++++. ..+.+|..
T Consensus 233 ~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-VGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (814)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCSEEEEEC-CSSSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence 89999999999999999999999999888777774 5788999999999986 466664 45666653
No 43
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=7.4e-38 Score=276.65 Aligned_cols=282 Identities=13% Similarity=0.129 Sum_probs=230.1
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc---ceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT---NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
.+...+|.+.|++++|+|+|.+|++|+.||+|++||++++. .......+...+..++|.+++.. .+++++.|+.|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~ 82 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEIL 82 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEE
Confidence 34456999999999999999999999999999999999877 24455678888999999987541 345566799999
Q ss_pred EEEc-CCCceEeeecC--CCCCeEEEEECCCCCEEEEeeCCCcEEEeecCC---------CCceeEEEecCCcceEEECC
Q psy16316 91 YLSL-HDNKYIRYFPG--HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS---------PNCQGIMHVSGSRPIAAFDP 158 (335)
Q Consensus 91 ~~~~-~~~~~~~~~~~--H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~---------~~~~~~~~~~~~~~~~~~~~ 158 (335)
+||+ .+++. ..+.+ |...|.+++|+| ++.|++++.|+.|++||+++ +++...+........+.++|
T Consensus 83 ~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (342)
T 1yfq_A 83 KVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS 160 (342)
T ss_dssp EECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred EEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC
Confidence 9999 77754 67888 999999999999 99999999999999999987 65554444455566778888
Q ss_pred CCCEEEEEEcCCeEEEEEccC-CCCCceeeEEeccCCCccceEEEEcc-CCCEEEEEeCCCeEEEEECCCC------eee
Q psy16316 159 EGLIFGVGVNSDTIKLYDVRS-FDKGPFSNFKFAAEKECDWTGIKFSA-DGKYILISTNGSIIRTFDAYNG------QCL 230 (335)
Q Consensus 159 ~~~~~~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~~~~i~i~d~~~~------~~~ 230 (335)
++ +++++.++.|++||++. .... ... ....+...+.+++|+| +++++++++.++.|++|+.... +..
T Consensus 161 ~~--l~~~~~d~~i~i~d~~~~~~~~-~~~--~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 161 SR--LIVGMNNSQVQWFRLPLCEDDN-GTI--EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp SE--EEEEESTTEEEEEESSCCTTCC-CEE--EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred Cc--EEEEeCCCeEEEEECCcccccc-cee--eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence 77 88899999999999986 3321 111 1223445678999999 9999999999999999999876 666
Q ss_pred eeeccccc------CCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece
Q psy16316 231 QTLAGFLN------NKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304 (335)
Q Consensus 231 ~~~~~~~~------~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~ 304 (335)
..+..+.. +...+.+++|+|++++|++|+.||.|++||+.++..+..+...|.++|++++ |++.++++++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~D 313 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSD 313 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEEC
T ss_pred eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecC
Confidence 66655432 2347889999999999999999999999999999888777542399999999 999999999865
Q ss_pred e
Q psy16316 305 L 305 (335)
Q Consensus 305 ~ 305 (335)
.
T Consensus 314 g 314 (342)
T 1yfq_A 314 D 314 (342)
T ss_dssp T
T ss_pred C
Confidence 3
No 44
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.2e-36 Score=280.64 Aligned_cols=282 Identities=19% Similarity=0.279 Sum_probs=234.8
Q ss_pred ceeeeccCCccE-EEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 13 VAKLFRENTDKI-TSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 13 ~~~~~~~h~~~V-~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
....+++|.+.| .++.| ++.+|++|+.||+|++||+.+++....+.+|...+..++|.++. .+++++.|++|++
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~v 187 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 187 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT---EEEEEETTSCEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEE
Confidence 456899999885 66665 67899999999999999999999999988999999999998765 6677888999999
Q ss_pred EEcCCCceEeeecCCCCCeEEEEEC--CCCCEEEEeeCCCcEEEeecCCCCceeE----------------------EEe
Q psy16316 92 LSLHDNKYIRYFPGHTKKVNSLCLS--PIDDTFISGSYDKTVRLWDLRSPNCQGI----------------------MHV 147 (335)
Q Consensus 92 ~~~~~~~~~~~~~~H~~~V~~~~~~--~~~~~l~s~s~D~~i~vWd~~~~~~~~~----------------------~~~ 147 (335)
||+.+++.+..+.+|...|.+++|+ ++++.+++|+.|++|++||++++..... ...
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 9999999999999999999999998 5678999999999999999987654321 112
Q ss_pred cCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCC
Q psy16316 148 SGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG 227 (335)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~ 227 (335)
.+...+..+++++.++++++.|+.|++||+++.. . ......+...+.+++|+|+++++++++.|+.|++||++++
T Consensus 268 ~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~--~---~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 342 (464)
T 3v7d_B 268 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK--C---LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG 342 (464)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE--E---EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred CccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc--E---EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence 2333455678889999999999999999997532 1 2222345567889999999999999999999999999999
Q ss_pred eeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee-ceeE
Q psy16316 228 QCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC-TNLA 306 (335)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~-~~~~ 306 (335)
+++..+.+ +...+.+++|+ +++|++|+.||.|++||+.++.+..... |...+..++|+|++.++++++ +.++
T Consensus 343 ~~~~~~~~---h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~dg~i~ 415 (464)
T 3v7d_B 343 ELMYTLQG---HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVSGSENQFN 415 (464)
T ss_dssp EEEEEECC---CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE--CTTCCCEEEEEECSSEEEEEETTEEE
T ss_pred cEEEEEeC---CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec--CCCCccEEEEEeCCCEEEEecCCeEE
Confidence 99888866 44567788887 5799999999999999999887665553 667888899999999999886 5799
Q ss_pred Eeccc
Q psy16316 307 FWIPT 311 (335)
Q Consensus 307 ~w~~~ 311 (335)
+|...
T Consensus 416 iwd~~ 420 (464)
T 3v7d_B 416 IYNLR 420 (464)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99763
No 45
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.5e-37 Score=272.75 Aligned_cols=250 Identities=21% Similarity=0.360 Sum_probs=209.9
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCC------cceeeeecccccceEEEEecCCCeeEEeecC
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELG------TNKRTVFSKKYGVDLIRFTHAKQAAIHASTK 84 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (335)
.+..+.+..|...|.+++|+|+|.+||+|+.|+++++|++... .....+..|...+..++|.++... +++++
T Consensus 96 ~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~t~s 173 (354)
T 2pbi_B 96 TNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ--ILTAS 173 (354)
T ss_dssp CCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSE--EEEEE
T ss_pred CCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCE--EEEEe
Confidence 3455678889999999999999999999999999999998654 234456678888999999987654 45666
Q ss_pred CCCeEEEEEcCCCceEeeecCCCCCeEEEEECCC--CCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCC
Q psy16316 85 IDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGL 161 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~ 161 (335)
.|++|++||+++++.+..+.+|...|.+++++|+ ++.|++|+.|++|++||++++++...+. +...+..++|+|++.
T Consensus 174 ~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~ 253 (354)
T 2pbi_B 174 GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD 253 (354)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC
Confidence 7999999999999999999999999999999884 6899999999999999999988776553 344567789999999
Q ss_pred EEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCC
Q psy16316 162 IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKG 241 (335)
Q Consensus 162 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 241 (335)
++++|+.|++|++||++... ....+ ........+.+++|+|++.+|++++.|+.|++||+.+++.+..+.+ |..
T Consensus 254 ~l~s~s~D~~v~lwd~~~~~--~~~~~-~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~---h~~ 327 (354)
T 2pbi_B 254 AFASGSDDATCRLYDLRADR--EVAIY-SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG---HEN 327 (354)
T ss_dssp EEEEEETTSCEEEEETTTTE--EEEEE-CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC---CSS
T ss_pred EEEEEeCCCeEEEEECCCCc--EEEEE-cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEEC---CCC
Confidence 99999999999999998632 11111 1122234567899999999999999999999999999988877765 456
Q ss_pred CceEEEEcCCCcEEEEEeCCCcEEEEE
Q psy16316 242 CPLEASFTPDSKYVISGSTDGRIHIWN 268 (335)
Q Consensus 242 ~v~~~~~sp~~~~l~tgs~dg~v~iwd 268 (335)
.|.+++|+|++++|++|+.|++|++|+
T Consensus 328 ~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 328 RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 788999999999999999999999995
No 46
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-37 Score=277.99 Aligned_cols=281 Identities=10% Similarity=0.102 Sum_probs=225.7
Q ss_pred ccCCccEEEEEECCCCC-EEEEecCCCeEEEEEc----cCCc------ceeeeec----------ccccceEEEEecCCC
Q psy16316 18 RENTDKITSIDYSADGL-LLISCSEDDQIVIYDC----ELGT------NKRTVFS----------KKYGVDLIRFTHAKQ 76 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~----~~~~------~~~~~~~----------~~~~~~~~~~~~~~~ 76 (335)
..|.+.|++++|+|+|+ +||+|+.||+|++||+ .+++ ....+.. +...+..++|++++.
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45669999999999999 9999999999999999 8877 3333333 456899999998655
Q ss_pred eeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE----------
Q psy16316 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH---------- 146 (335)
Q Consensus 77 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~---------- 146 (335)
.+++++.|+.+++|| .+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++....+.
T Consensus 122 --~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 198 (425)
T 1r5m_A 122 --SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN 198 (425)
T ss_dssp --EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred --EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence 455666799999999 6778888999999999999999999999999999999999997655332110
Q ss_pred -----------------------------------------------ecCCcceEEECCCCCEEEEEEcCCeEEEEEccC
Q psy16316 147 -----------------------------------------------VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS 179 (335)
Q Consensus 147 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~ 179 (335)
+...+..+.++|++.++++++.|+.|++||++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 278 (425)
T 1r5m_A 199 AENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN 278 (425)
T ss_dssp -------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS
T ss_pred eccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 112234567889999999999999999999986
Q ss_pred CCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEe
Q psy16316 180 FDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS 259 (335)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs 259 (335)
.. ....+ ..+...+.+++|+|++ ++++++.++.|++||+.+++.+..+.. +...+.+++|+|++++|++|+
T Consensus 279 ~~--~~~~~---~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 279 GN--SQNCF---YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV---DGVPIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp BS--CSEEE---CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC---TTCCEEEEEECTTSSEEEEEE
T ss_pred Cc--cceEe---cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc---CCccEEEEEEcCCCCEEEEEE
Confidence 32 22222 2345577899999999 999999999999999999988877764 345688999999999999999
Q ss_pred CCCcEEEEECCCCe--------------------eEEEeCCCCCC--CeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 260 TDGRIHIWNAEKGF--------------------KVCVLDADHPS--PVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 260 ~dg~v~iwd~~~~~--------------------~~~~~~~~h~~--~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
.||.|++||+.++. ....+. .|.. .|++++|+|++++|++++ +.+++|.++
T Consensus 350 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 350 MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp TTSCEEEEECHHHHC--------------CEECCEEEEEC-CTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred CCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc-CcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 99999999998766 566664 4755 999999999999998886 568999753
No 47
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-38 Score=287.74 Aligned_cols=285 Identities=12% Similarity=0.186 Sum_probs=232.5
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccC----CcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCEL----GTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
.|...|++++|+|+|.+|++|+.||+|++||+.. .+....+..|...+..++|.++.. .++++++.|+.|++||+
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQD-NVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSST-TBEEEECSSSCEEBCBT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCC-CEEEEEcCCCeEEEEEC
Confidence 5899999999999999999999999999999987 346667777889999999998732 24556678999999999
Q ss_pred CCCc------eEe---eecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCCCceeEEEe-------cCCcceEEEC
Q psy16316 95 HDNK------YIR---YFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSPNCQGIMHV-------SGSRPIAAFD 157 (335)
Q Consensus 95 ~~~~------~~~---~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-------~~~~~~~~~~ 157 (335)
.+++ ... .+.+|...|.+++|+|+ +.+|++++.|+.|++||+++++....+.. ...+..+.|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH 223 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence 8876 332 34789999999999999 78999999999999999998877665543 3456678899
Q ss_pred CCC-CEEEEEEcCC---eEEEEEccCCCCCceeeEEecc-CCCccceEEEEcc-CCCEEEEEeCCCeEEEEECCCCeeee
Q psy16316 158 PEG-LIFGVGVNSD---TIKLYDVRSFDKGPFSNFKFAA-EKECDWTGIKFSA-DGKYILISTNGSIIRTFDAYNGQCLQ 231 (335)
Q Consensus 158 ~~~-~~~~~~~~d~---~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~-~~~~l~~~~~~~~i~i~d~~~~~~~~ 231 (335)
|++ .++++++.++ .|++||++.... +.. ... .+...+.+++|+| ++.+|++++.|+.|++||+.+++++.
T Consensus 224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~---~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~ 299 (416)
T 2pm9_A 224 PKNSTRVATATGSDNDPSILIWDLRNANT-PLQ---TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS 299 (416)
T ss_dssp SSCTTEEEEEECCSSSCCCCEEETTSTTS-CSB---CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEE
T ss_pred CCCCCEEEEEECCCCCceEEEEeCCCCCC-CcE---EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccce
Confidence 987 6899999998 999999986421 111 122 3556788999999 99999999999999999999998888
Q ss_pred eecccccCCCCceEEEEcCCC-cEEEEEeCCCcEEEEECCCCeeEEEe--------------------------------
Q psy16316 232 TLAGFLNNKGCPLEASFTPDS-KYVISGSTDGRIHIWNAEKGFKVCVL-------------------------------- 278 (335)
Q Consensus 232 ~~~~~~~~~~~v~~~~~sp~~-~~l~tgs~dg~v~iwd~~~~~~~~~~-------------------------------- 278 (335)
.+..| ...+.+++|+|++ .+|++++.|+.|++||+.+.......
T Consensus 300 ~~~~~---~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (416)
T 2pm9_A 300 QFPAR---GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL 376 (416)
T ss_dssp EEECS---SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC
T ss_pred eecCC---CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc
Confidence 87654 4567789999999 89999999999999998765421110
Q ss_pred --CCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 279 --DADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 279 --~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
+..|..++..++|+|+|+++++++ +.+++|.+.
T Consensus 377 ~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 377 QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence 011677888999999999999996 568999764
No 48
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.5e-37 Score=266.32 Aligned_cols=250 Identities=16% Similarity=0.202 Sum_probs=208.1
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
.+..+.+.+|..+|.++.|+|++++|++|+.|++|++||+++++....+..|...+..++|.++.. .+++++.|++|+
T Consensus 45 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~ 122 (304)
T 2ynn_A 45 QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVK 122 (304)
T ss_dssp TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS--EEEEEETTSCEE
T ss_pred CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCC--EEEEECCCCeEE
Confidence 345678899999999999999999999999999999999999999999999999999999998765 566777899999
Q ss_pred EEEcCCC-ceEeeecCCCCCeEEEEECC-CCCEEEEeeCCCcEEEeecCCCCceeEEEec--CCcceEEECC--CCCEEE
Q psy16316 91 YLSLHDN-KYIRYFPGHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRSPNCQGIMHVS--GSRPIAAFDP--EGLIFG 164 (335)
Q Consensus 91 ~~~~~~~-~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~ 164 (335)
+||+.++ ...+.+.+|...|.+++|+| ++..|++|+.|++|++||+++.......... .....+.+.| ++.+++
T Consensus 123 lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (304)
T 2ynn_A 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (304)
T ss_dssp EEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEE
T ss_pred EEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEE
Confidence 9999887 55678999999999999999 5689999999999999999877665444322 3344566665 778999
Q ss_pred EEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCce
Q psy16316 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 165 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 244 (335)
+|+.|++|++||+++.. .. .....+...+..++|+|++++|++++.|+.|++||+.++++.+.+.. +...+.
T Consensus 203 s~s~D~~i~iWd~~~~~--~~---~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~---~~~~~~ 274 (304)
T 2ynn_A 203 TASDDLTIKIWDYQTKS--CV---ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV---GLERSW 274 (304)
T ss_dssp EEETTSEEEEEETTTTE--EE---EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC---SSSSEE
T ss_pred EEcCCCeEEEEeCCCCc--cc---eeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccC---CCccEE
Confidence 99999999999998632 22 22234556788999999999999999999999999999998888765 345678
Q ss_pred EEEEcCCCc--EEEEEeCCCcEEEEECCC
Q psy16316 245 EASFTPDSK--YVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 245 ~~~~sp~~~--~l~tgs~dg~v~iwd~~~ 271 (335)
+++|+|++. ++|+|+.|| +.+|++.+
T Consensus 275 ~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 275 CIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp EEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred EEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 899999875 688887666 88887754
No 49
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-38 Score=284.13 Aligned_cols=251 Identities=11% Similarity=0.118 Sum_probs=195.7
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCC--cceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELG--TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
.+.++.|.++|++++|+|+|++||+|+.|++|+|||+.++ +....+..|...+..++|++++. .+++++.|+++++
T Consensus 4 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~v 81 (377)
T 3dwl_C 4 SQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYV 81 (377)
T ss_dssp EEEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTC--CEEEEETTSSEEE
T ss_pred ceeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCC--EEEEEeCCCeEEE
Confidence 3456778899999999999999999999999999999988 66777788899999999998765 4556668999999
Q ss_pred EEcCCCc---eEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCc---eeEEE--ecCCcceEEECCCCCEE
Q psy16316 92 LSLHDNK---YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC---QGIMH--VSGSRPIAAFDPEGLIF 163 (335)
Q Consensus 92 ~~~~~~~---~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~ 163 (335)
||+.+++ ....+.+|...|.+++|+|++++|++|+.|+.|++||++++.. ...+. +...+..+.|+|++.++
T Consensus 82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 161 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL 161 (377)
T ss_dssp C------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred EEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence 9999877 6777889999999999999999999999999999999998763 33332 34556678999999999
Q ss_pred EEEEcCCeEEEEEccCCCCC------------ceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCee--
Q psy16316 164 GVGVNSDTIKLYDVRSFDKG------------PFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC-- 229 (335)
Q Consensus 164 ~~~~~d~~v~iwd~~~~~~~------------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~-- 229 (335)
++++.|++|++||++..... +.........+...+.+++|+|++++|++++.|+.|++||+.++++
T Consensus 162 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 241 (377)
T 3dwl_C 162 AAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP 241 (377)
T ss_dssp EEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred EEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 99999999999998632100 1111111115566789999999999999999999999999999876
Q ss_pred --eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 230 --LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 230 --~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
+..+.+ +...+.+++|+|++++|++|+.|+.+ +|+..
T Consensus 242 ~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 242 RALITVKL---SQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EECCCEEC---SSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred eeeEeecC---CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 444443 55678899999999999999877755 66554
No 50
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.6e-37 Score=282.50 Aligned_cols=282 Identities=12% Similarity=0.168 Sum_probs=223.7
Q ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEee
Q psy16316 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRY 102 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~ 102 (335)
.+++++|+|+|++|++|+.||++++||+.+++....+..+ ..+....+++++. .+++++.|+.|++||+.+++....
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~ 134 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNLQREI 134 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCEEEEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcceeee
Confidence 3457999999999999999999999999887765554443 2233445555544 456667899999999999999999
Q ss_pred ecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCC
Q psy16316 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD 181 (335)
Q Consensus 103 ~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~ 181 (335)
+.+|...|.+++|+|++++|++|+.|++|++||++++++...+. +...+..+.|+|++.++++++.|++|++||+++..
T Consensus 135 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 135 DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 99999999999999999999999999999999999888776553 45556778999999999999999999999998632
Q ss_pred CCceeeEEeccCC---------------------CccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCC
Q psy16316 182 KGPFSNFKFAAEK---------------------ECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240 (335)
Q Consensus 182 ~~~~~~~~~~~~~---------------------~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~ 240 (335)
....+.....+ ...+.+++|+|++++|++++.++.|++||+++++....+.. .+.
T Consensus 215 --~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~ 290 (420)
T 3vl1_A 215 --TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS--KFT 290 (420)
T ss_dssp --EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC--TTS
T ss_pred --eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc--ccC
Confidence 22222211111 12344567789999999999999999999999887766643 345
Q ss_pred CCceEEEEcCCCc-EEEEEeCCCcEEEEECCCCee-EEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecccc
Q psy16316 241 GCPLEASFTPDSK-YVISGSTDGRIHIWNAEKGFK-VCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 241 ~~v~~~~~sp~~~-~l~tgs~dg~v~iwd~~~~~~-~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~ 312 (335)
..+.+++|+|+++ +|++|+.||.|++||+.++.+ ...+...|..+|..+.| |++.++++++ +.+++|.+..
T Consensus 291 ~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 291 CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECC
T ss_pred CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccC
Confidence 6788999999999 999999999999999988743 44454457788988865 5778888885 5799998644
No 51
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-38 Score=292.85 Aligned_cols=287 Identities=12% Similarity=0.095 Sum_probs=212.6
Q ss_pred CCccEEEEEECCCC---------CEEEE-------------------ecCCCeEEEEEccCCcce----eeeecccccce
Q psy16316 20 NTDKITSIDYSADG---------LLLIS-------------------CSEDDQIVIYDCELGTNK----RTVFSKKYGVD 67 (335)
Q Consensus 20 h~~~V~~v~~s~~g---------~~las-------------------gs~Dg~i~lwd~~~~~~~----~~~~~~~~~~~ 67 (335)
+.+.|.+++|+|++ ++||+ |+.|++|+|||+++++.. ..+..+...+.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 56778888888876 45554 668999999999887653 23445567799
Q ss_pred EEEEecC----CCeeEEeecCCCCeEEEEEcCCCce-----------EeeecCCCCCeEEEEECCCCCEEEEeeCCCcEE
Q psy16316 68 LIRFTHA----KQAAIHASTKIDDTVRYLSLHDNKY-----------IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVR 132 (335)
Q Consensus 68 ~~~~~~~----~~~~~~~~~~~d~~i~~~~~~~~~~-----------~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~ 132 (335)
.++|+|. +...++++++.|++|++||+..+.. ...+.+|...|++++|+++ ..|++|+.||+|+
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~ 290 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVA 290 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEE
Confidence 9999986 2356788888999999999976532 2467899999999999986 4899999999999
Q ss_pred EeecCCCCcee-EE-EecCCcceE--EECCCC-CEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC
Q psy16316 133 LWDLRSPNCQG-IM-HVSGSRPIA--AFDPEG-LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG 207 (335)
Q Consensus 133 vWd~~~~~~~~-~~-~~~~~~~~~--~~~~~~-~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 207 (335)
+||++++.... .+ .+...+..+ .++|++ .++++|+.|++|++||++.... ...+... .....+.+++|+|++
T Consensus 291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~--~~~~~~~-~~~~~v~~v~fsp~~ 367 (524)
T 2j04_B 291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT--TKTTVSR-FRGSNLVPVVYCPQI 367 (524)
T ss_dssp EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH--HCEEEEE-CSCCSCCCEEEETTT
T ss_pred EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc--ccccccc-cccCcccceEeCCCc
Confidence 99998764432 22 233334444 568887 8999999999999999986321 1111111 111235679999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC-----e---------
Q psy16316 208 KYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG-----F--------- 273 (335)
Q Consensus 208 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~-----~--------- 273 (335)
..+++++.|++|++||++++.+...+.+ |...|.+++|+|++++|++|+.||+|++||.... .
T Consensus 368 ~~l~s~~~d~tv~lwd~~~~~~~~~l~g---H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~ 444 (524)
T 2j04_B 368 YSYIYSDGASSLRAVPSRAAFAVHPLVS---RETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSL 444 (524)
T ss_dssp TEEEEECSSSEEEEEETTCTTCCEEEEE---CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCC
T ss_pred CeEEEeCCCCcEEEEECcccccceeeec---CCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeee
Confidence 9999999999999999999988777765 5567899999999999999999999999985321 0
Q ss_pred eE------------------------------EEeCCCCCCCeEEEEeCCCCc---EEEeee--ceeEEecccccc
Q psy16316 274 KV------------------------------CVLDADHPSPVQTIQFNPKFN---MMASAC--TNLAFWIPTYLS 314 (335)
Q Consensus 274 ~~------------------------------~~~~~~h~~~v~~v~~sp~~~---~~~s~~--~~~~~w~~~~~~ 314 (335)
.+ ..+ .+|..+|++|+|||+++ .+|+|+ +.+++|.++.+-
T Consensus 445 ~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l-~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 445 RLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKI-DAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp EEEECBCCSSSCEEEECCCCCCCC--------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred EEEEeccCCCCCeEEccCCceecccccCCcceeee-cCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 01 011 24888999999999965 888886 679999877654
No 52
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.5e-37 Score=278.41 Aligned_cols=260 Identities=20% Similarity=0.299 Sum_probs=210.7
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc-------ceeeeecccccceEEEEecCCCeeEEeec
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT-------NKRTVFSKKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
.+....+++|...|.+++|+|+|++||+|+.|+++++||+.+.. ....+.+|...+..+.|.++... .++++
T Consensus 98 ~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~ 176 (380)
T 3iz6_a 98 SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITG 176 (380)
T ss_dssp TEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEE
T ss_pred CccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEE
Confidence 34567889999999999999999999999999999999997542 23445677888888888876443 34567
Q ss_pred CCCCeEEEEEcCCCceEeee-----cCCCCCeEEEEECC-CCCEEEEeeCCCcEEEeecCC-CCceeEE-EecCCcceEE
Q psy16316 84 KIDDTVRYLSLHDNKYIRYF-----PGHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRS-PNCQGIM-HVSGSRPIAA 155 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~-----~~H~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~-~~~~~~~-~~~~~~~~~~ 155 (335)
+.|++|++||+.+++.+..+ .+|...|.++++++ ++++|++|+.|++|++||++. ..+...+ .+.+.+..++
T Consensus 177 s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~ 256 (380)
T 3iz6_a 177 SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVK 256 (380)
T ss_dssp CTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEE
T ss_pred CCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEE
Confidence 78999999999999988777 68999999999987 788999999999999999984 3444444 3455677889
Q ss_pred ECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccC----CCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeee
Q psy16316 156 FDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE----KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQ 231 (335)
Q Consensus 156 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~ 231 (335)
|+|++.++++|+.|++|++||+++.. ....+..... ....+.+++|+|++++|++++.++.|++||+.+++...
T Consensus 257 ~~p~~~~l~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~ 334 (380)
T 3iz6_a 257 FFPDGQRFGTGSDDGTCRLFDMRTGH--QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVL 334 (380)
T ss_dssp ECTTSSEEEEECSSSCEEEEETTTTE--EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEE
T ss_pred EecCCCeEEEEcCCCeEEEEECCCCc--EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEE
Confidence 99999999999999999999998632 1221211111 11236789999999999999999999999999988877
Q ss_pred eeccc-ccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCe
Q psy16316 232 TLAGF-LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGF 273 (335)
Q Consensus 232 ~~~~~-~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~ 273 (335)
.+... ..|...|.+++|+|++++|+|||.|++|++|++....
T Consensus 335 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 335 NLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 66432 3466778999999999999999999999999987543
No 53
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.7e-36 Score=261.93 Aligned_cols=253 Identities=20% Similarity=0.347 Sum_probs=210.6
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
.+..+.+.+|...|.++.|+|+|++|++|+.|++|++||+++++....+..|...+..+.|.+++. .+++++.|+.++
T Consensus 55 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~ 132 (312)
T 4ery_A 55 GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVR 132 (312)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS--EEEEEETTSCEE
T ss_pred cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEE
Confidence 345678899999999999999999999999999999999999999888888999999999988655 456677899999
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe--cCCcceEEECCCCCEEEEEEc
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV--SGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 168 (335)
+||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++++++...+.. ......+.++|++.++++++.
T Consensus 133 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 212 (312)
T 4ery_A 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 212 (312)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET
T ss_pred EEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC
Confidence 999999999999999999999999999999999999999999999998877655432 234456789999999999999
Q ss_pred CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEE
Q psy16316 169 SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF 248 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 248 (335)
|+.|++||++... ....+.........+......+++.++++++.|+.|++||+.+++.+..+.+| ...+.+++|
T Consensus 213 d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h---~~~v~~~~~ 287 (312)
T 4ery_A 213 DNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH---TDVVISTAC 287 (312)
T ss_dssp TTEEEEEETTTTE--EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC---SSCEEEEEE
T ss_pred CCeEEEEECCCCc--EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc---CCcEEEEee
Confidence 9999999997632 12222111111111222334467889999999999999999999988887664 456889999
Q ss_pred cCCCcEEEEEe--CCCcEEEEECC
Q psy16316 249 TPDSKYVISGS--TDGRIHIWNAE 270 (335)
Q Consensus 249 sp~~~~l~tgs--~dg~v~iwd~~ 270 (335)
+|++++|++++ .|+.|++|+..
T Consensus 288 ~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 288 HPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSSSEEEEEECTTTCCEEEEECC
T ss_pred cCcCCceEEEEccCCccEEEecCC
Confidence 99999999997 69999999864
No 54
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-37 Score=280.91 Aligned_cols=285 Identities=15% Similarity=0.262 Sum_probs=228.8
Q ss_pred CccEEEEEECCCCC-EEEEe----------cCCCeEEEEEccCCcce--eeeecccccceEEEEecCCCeeEEeecCCCC
Q psy16316 21 TDKITSIDYSADGL-LLISC----------SEDDQIVIYDCELGTNK--RTVFSKKYGVDLIRFTHAKQAAIHASTKIDD 87 (335)
Q Consensus 21 ~~~V~~v~~s~~g~-~lasg----------s~Dg~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 87 (335)
...|.+++|+|+|+ +||+| +.|++|+|||++++... .....+...+..++|++++. .+++++.|+
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg 89 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNK--IIAGALDNG 89 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSS--CEEEEESSS
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCC--eEEEEccCC
Confidence 35688999999997 99999 89999999999987632 22235677899999988765 445566799
Q ss_pred eEEEEEcCC----CceEeeecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCCC------ceeEE----EecCCcc
Q psy16316 88 TVRYLSLHD----NKYIRYFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSPN------CQGIM----HVSGSRP 152 (335)
Q Consensus 88 ~i~~~~~~~----~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~------~~~~~----~~~~~~~ 152 (335)
.+++|++.. .+.+..+.+|...|.+++|+|+ +++|++++.|+.|++||++++. ..... .+...+.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 999999987 4578889999999999999998 8999999999999999998876 22211 2344566
Q ss_pred eEEECCC-CCEEEEEEcCCeEEEEEccCCCCCceeeEEecc---CCCccceEEEEccCC-CEEEEEeCCC---eEEEEEC
Q psy16316 153 IAAFDPE-GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA---EKECDWTGIKFSADG-KYILISTNGS---IIRTFDA 224 (335)
Q Consensus 153 ~~~~~~~-~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~-~~l~~~~~~~---~i~i~d~ 224 (335)
.+.|+|+ +.++++++.|+.|++||++... ....+.... .+...+.+++|+|++ .++++++.++ .|++||+
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTE--EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCC--cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 7899998 7899999999999999998632 222222111 114568899999997 6889999998 9999999
Q ss_pred CCC-eeeeeecccccCCCCceEEEEcC-CCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCC-cEEEee
Q psy16316 225 YNG-QCLQTLAGFLNNKGCPLEASFTP-DSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKF-NMMASA 301 (335)
Q Consensus 225 ~~~-~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~~~s~ 301 (335)
+++ +....+. ..+...+.+++|+| ++++|++++.|+.|++||+.++.....+. .|..+|.+++|+|++ .+++++
T Consensus 248 ~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~ 324 (416)
T 2pm9_A 248 RNANTPLQTLN--QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP-ARGNWCFKTKFAPEAPDLFACA 324 (416)
T ss_dssp TSTTSCSBCCC--SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE-CSSSCCCCEEECTTCTTEEEEC
T ss_pred CCCCCCcEEee--cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec-CCCCceEEEEECCCCCCEEEEE
Confidence 986 4444443 03556788999999 99999999999999999999988877775 589999999999999 799988
Q ss_pred e--ceeEEecccc
Q psy16316 302 C--TNLAFWIPTY 312 (335)
Q Consensus 302 ~--~~~~~w~~~~ 312 (335)
+ +.+++|.+..
T Consensus 325 ~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 325 SFDNKIEVQTLQN 337 (416)
T ss_dssp CSSSEEEEEESCC
T ss_pred ecCCcEEEEEccC
Confidence 6 5689997643
No 55
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-36 Score=267.45 Aligned_cols=258 Identities=16% Similarity=0.200 Sum_probs=202.1
Q ss_pred eccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc--ceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT--NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
..+|.+.|++++|+|+|++||+|+.|++++|||...+. +...+.+|...|..++|++++. .+++++.|++|++||+
T Consensus 57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~ 134 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEV 134 (345)
T ss_dssp CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEE
T ss_pred ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEEC
Confidence 36899999999999999999999999999999998764 4567778889999999998765 5667778999999999
Q ss_pred CCC---ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE---EecCCcceEEECCCCCEEEEEEc
Q psy16316 95 HDN---KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM---HVSGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 95 ~~~---~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 168 (335)
.++ .++..+.+|...|.+++|+|++++|++|+.|++|++||++.+...... .+...+..++|+|++.++++|+.
T Consensus 135 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~ 214 (345)
T 3fm0_A 135 DEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD 214 (345)
T ss_dssp CTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence 765 346678899999999999999999999999999999999876533222 23345567899999999999999
Q ss_pred CCeEEEEEccCCCCCc----------eeeE-EeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCee----eeee
Q psy16316 169 SDTIKLYDVRSFDKGP----------FSNF-KFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC----LQTL 233 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~----~~~~ 233 (335)
|++|++||........ .... .....+...+.+++|+|++..|++++.|+.|++|+...... ...+
T Consensus 215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 294 (345)
T 3fm0_A 215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSL 294 (345)
T ss_dssp TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEE
T ss_pred CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEE
Confidence 9999999975322110 0001 11122455678999999999999999999999999865431 1111
Q ss_pred --cccccCCCCceEEEEcCCC-cEEEEEeCCCcEEEEECCCCeeEE
Q psy16316 234 --AGFLNNKGCPLEASFTPDS-KYVISGSTDGRIHIWNAEKGFKVC 276 (335)
Q Consensus 234 --~~~~~~~~~v~~~~~sp~~-~~l~tgs~dg~v~iwd~~~~~~~~ 276 (335)
..+..|...|.+++|+|++ .+||+||.||+|++|+..+..+..
T Consensus 295 ~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 295 TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 1123466789999999997 599999999999999998776544
No 56
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-36 Score=271.59 Aligned_cols=260 Identities=17% Similarity=0.182 Sum_probs=211.7
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEcc--CCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCE--LGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
++.+.+++|.+.|++++|+|+|++||+|+.||+|+|||++ ++.....+..|...+..++|.++.....+++++.|+.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 3567889999999999999999999999999999999998 45556677788899999999877545567778889999
Q ss_pred EEEEcCCCc--eEeeecCCCCCeEEEEECCC--CCEEEEeeCCCcEEEeecCCCCceeEE---EecCCcceEEECC----
Q psy16316 90 RYLSLHDNK--YIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKTVRLWDLRSPNCQGIM---HVSGSRPIAAFDP---- 158 (335)
Q Consensus 90 ~~~~~~~~~--~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~i~vWd~~~~~~~~~~---~~~~~~~~~~~~~---- 158 (335)
++||+.+++ .+..+.+|...|.+++|+|+ +++|++++.|+.|++||++........ .+...+..+.|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999987 77888999999999999999 899999999999999999887543332 2344556778998
Q ss_pred ---------CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC---CCEEEEEeCCCeEEEEECCC
Q psy16316 159 ---------EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD---GKYILISTNGSIIRTFDAYN 226 (335)
Q Consensus 159 ---------~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~~~~~i~i~d~~~ 226 (335)
++.++++++.|+.|++||++.... ..........+...+.+++|+|+ +.+|++++.|+.|++||+.+
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCc-ceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 699999999999999999986432 11222223345667899999999 89999999999999999988
Q ss_pred Cee--eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 227 GQC--LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 227 ~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
++. ...+.....+...+.+++|+|++++|++++.||.|++|++...
T Consensus 241 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 241 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 642 1222223335667889999999999999999999999998743
No 57
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.2e-37 Score=273.17 Aligned_cols=247 Identities=15% Similarity=0.247 Sum_probs=195.5
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCccee----eeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR----TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
.....+|.+.|++++|+|++.+ ++++.||+|+|||+.+++... ....|...|..++|++++. .+++++.|++|
T Consensus 87 ~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v 163 (357)
T 4g56_B 87 CTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSV 163 (357)
T ss_dssp CSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCE
T ss_pred ecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeE
Confidence 3445689999999999999864 567889999999998876543 2346778899999998765 45667789999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCC-EEEEeeCCCcEEEeecCCCCceeEEEe---cCCcceEEECCC-CCEEE
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD-TFISGSYDKTVRLWDLRSPNCQGIMHV---SGSRPIAAFDPE-GLIFG 164 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~ 164 (335)
++||+.+++.+..+++|...|++++|+|++. .+++++.|++|++||+++++....... ......++|+|+ +.+++
T Consensus 164 ~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la 243 (357)
T 4g56_B 164 KVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA 243 (357)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE
Confidence 9999999999999999999999999999874 799999999999999998876544322 233456789987 57899
Q ss_pred EEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC-CEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCc
Q psy16316 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG-KYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCP 243 (335)
Q Consensus 165 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v 243 (335)
+|+.|+.|++||++..+ .... ...+...+.+++|+|++ ++|++++.|+.|++||++++++++.+ .|...|
T Consensus 244 ~g~~d~~i~~wd~~~~~--~~~~---~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~----~H~~~V 314 (357)
T 4g56_B 244 CGDETGNVSLVNIKNPD--SAQT---SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL----SHRDFV 314 (357)
T ss_dssp EEESSSCEEEEESSCGG--GCEE---ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC----CCSSCE
T ss_pred EeecccceeEEECCCCc--EeEE---EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC----CCCCCE
Confidence 99999999999998642 2222 23345678899999997 57889999999999999999887654 356778
Q ss_pred eEEEEcC-CCcEEEEEeCCCcEEEEECCCC
Q psy16316 244 LEASFTP-DSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 244 ~~~~~sp-~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
.+++|+| ++++|||||.||+|++|++.+.
T Consensus 315 ~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 315 TGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999 7999999999999999998653
No 58
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.3e-36 Score=267.28 Aligned_cols=251 Identities=16% Similarity=0.248 Sum_probs=199.4
Q ss_pred ceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
+.+.+.+|.+.|.+++|+|++.+|+||+.|++|++||+++++....+.+|...+..++|++++.. +++++.|++|++|
T Consensus 68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~--l~s~~~d~~i~~w 145 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQ--ILSAGAEREIKLW 145 (343)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTE--EEEEETTSCEEEE
T ss_pred ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCE--EEEEcCCCEEEEE
Confidence 34678999999999999999999999999999999999999998888899999999999987664 4566789999999
Q ss_pred EcCCCceEee--ecCCCCCeEEEEECCCC----------CEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCC
Q psy16316 93 SLHDNKYIRY--FPGHTKKVNSLCLSPID----------DTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPE 159 (335)
Q Consensus 93 ~~~~~~~~~~--~~~H~~~V~~~~~~~~~----------~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~ 159 (335)
|+........ ..+|...|.+++|+|++ .+|++++.|++|++||... .....+ .+...+..++|+|+
T Consensus 146 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~h~~~v~~~~~s~~ 224 (343)
T 2xzm_R 146 NILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPN 224 (343)
T ss_dssp ESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEEEEEECCSSCEEEEEECTT
T ss_pred eccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ceeEEEcCccccceEEEECCC
Confidence 9984433222 23799999999999986 7899999999999999543 332222 33445667899999
Q ss_pred CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeee--eecc--
Q psy16316 160 GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQ--TLAG-- 235 (335)
Q Consensus 160 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~--~~~~-- 235 (335)
++++++|+.|++|++||++.... +...+. ....+.+++|+|++.++++++ ++.|++||+.+++... .+..
T Consensus 225 g~~l~sgs~dg~v~iwd~~~~~~-~~~~~~----~~~~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~~~~~ 298 (343)
T 2xzm_R 225 GKYIATGGKDKKLLIWDILNLTY-PQREFD----AGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEP 298 (343)
T ss_dssp SSEEEEEETTCEEEEEESSCCSS-CSEEEE----CSSCEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEECCCCS
T ss_pred CCEEEEEcCCCeEEEEECCCCcc-cceeec----CCCcEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEeecCc
Confidence 99999999999999999954321 122211 223578999999999887664 6679999998876543 3321
Q ss_pred ------cccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 236 ------FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 236 ------~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
...+...+.+++|+|++++|++|+.||.|++|++.++
T Consensus 299 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 299 ITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp GGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred chhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 1235556889999999999999999999999998654
No 59
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-36 Score=266.44 Aligned_cols=255 Identities=16% Similarity=0.260 Sum_probs=190.0
Q ss_pred cceeee-cc-CCccEEEEEECCCCCEEEEecCCCeEEEEEccCC-------cceeeeecccccceEEEEecCCCeeEEee
Q psy16316 12 KVAKLF-RE-NTDKITSIDYSADGLLLISCSEDDQIVIYDCELG-------TNKRTVFSKKYGVDLIRFTHAKQAAIHAS 82 (335)
Q Consensus 12 ~~~~~~-~~-h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (335)
++...+ .+ |.+.|++++|+|+|++||+|+.|++|+|||.+.. .....+.+|...|..++|++++. .+++
T Consensus 47 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las 124 (330)
T 2hes_X 47 TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLAT 124 (330)
T ss_dssp EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEE
T ss_pred EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEE
Confidence 344555 45 9999999999999999999999999999998532 34456677888999999998754 5677
Q ss_pred cCCCCeEEEEEcCC----CceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCC--CceeEE-EecCCcceEE
Q psy16316 83 TKIDDTVRYLSLHD----NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP--NCQGIM-HVSGSRPIAA 155 (335)
Q Consensus 83 ~~~d~~i~~~~~~~----~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~--~~~~~~-~~~~~~~~~~ 155 (335)
++.|++|++||+.. .+++..+.+|...|.+++|+|++++|+||+.|++|++||..++ .+...+ .+.+.+..+.
T Consensus 125 ~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~ 204 (330)
T 2hes_X 125 CSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSD 204 (330)
T ss_dssp EETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred EeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEE
Confidence 77899999999943 2567789999999999999999999999999999999998765 333333 2334456678
Q ss_pred ECCC--CCEEEEEEcCCeEEEEEccCCCCCce---eeEEec-cCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCee
Q psy16316 156 FDPE--GLIFGVGVNSDTIKLYDVRSFDKGPF---SNFKFA-AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC 229 (335)
Q Consensus 156 ~~~~--~~~~~~~~~d~~v~iwd~~~~~~~~~---~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~ 229 (335)
|+|+ +.++++|+.|++|++||++....... ...... ..+...+.+++|++++ +|++++.|+.|++||..+++.
T Consensus 205 ~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~ 283 (330)
T 2hes_X 205 FDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEW 283 (330)
T ss_dssp ECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEE
T ss_pred ecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCce
Confidence 9998 77899999999999999875321111 111111 2255678899999765 789999999999999987742
Q ss_pred --eeeecccccCCC-CceEEEEcC--CCcEEEEEeCCCcEEEEECCC
Q psy16316 230 --LQTLAGFLNNKG-CPLEASFTP--DSKYVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 230 --~~~~~~~~~~~~-~v~~~~~sp--~~~~l~tgs~dg~v~iwd~~~ 271 (335)
.... ...|.. .+.+++|+| ++++||+|+.||+|++|++.+
T Consensus 284 ~~~~~~--~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 284 KVFAKR--ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEE--SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEecc--ccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 2221 122333 678899999 689999999999999999864
No 60
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=5.1e-36 Score=264.15 Aligned_cols=260 Identities=15% Similarity=0.167 Sum_probs=208.3
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc----ceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT----NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
.+.+++|++.|++++|+|+|++||+|+.||+|++||+.++. ....+..|...+..++|.+..+...+++++.|+.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 45678999999999999999999999999999999998764 44555678889999999885334466777789999
Q ss_pred EEEEcCCC---------ceEeeecCCCCCeEEEEECCC--CCEEEEeeCCCcEEEeecCCCCceeEEE------------
Q psy16316 90 RYLSLHDN---------KYIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKTVRLWDLRSPNCQGIMH------------ 146 (335)
Q Consensus 90 ~~~~~~~~---------~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~i~vWd~~~~~~~~~~~------------ 146 (335)
++||+.++ +.+..+.+|...|.+++|+|+ +++|++++.|+.|++||+++++....+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999876 567888999999999999999 9999999999999999998876543221
Q ss_pred --ecCCcceEEECCC---CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC----CEEEEEeCCC
Q psy16316 147 --VSGSRPIAAFDPE---GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG----KYILISTNGS 217 (335)
Q Consensus 147 --~~~~~~~~~~~~~---~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~l~~~~~~~ 217 (335)
.......+.++|+ +.++++++.++.+.+|+.... ..........+...+.+++|+|++ .+|++++.|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg 240 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG---KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG 240 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS---CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC---ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence 1223456788887 899999999999977776542 222233334556778999999998 8999999999
Q ss_pred eEEEEECCCCee-------------------------------------------eeeecccccCCCCceEEEEcCCCcE
Q psy16316 218 IIRTFDAYNGQC-------------------------------------------LQTLAGFLNNKGCPLEASFTPDSKY 254 (335)
Q Consensus 218 ~i~i~d~~~~~~-------------------------------------------~~~~~~~~~~~~~v~~~~~sp~~~~ 254 (335)
.|++||++++.. .+.+.....|...+.+++|+|++++
T Consensus 241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 999999986521 1122223345667899999999999
Q ss_pred EEEEeCCCcEEEEECCCCeeEE
Q psy16316 255 VISGSTDGRIHIWNAEKGFKVC 276 (335)
Q Consensus 255 l~tgs~dg~v~iwd~~~~~~~~ 276 (335)
|++|+.||.|++|++.++.+..
T Consensus 321 l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 321 LSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCEE
T ss_pred EEEecCCCcEEEEecCcCcchh
Confidence 9999999999999998765443
No 61
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-35 Score=304.40 Aligned_cols=289 Identities=21% Similarity=0.347 Sum_probs=245.9
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
..+.+|.+.|++++|+|+|++||+|+.||+|++||+.+++....+..|...+..++|++++. .+++++.|+.|++||+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIWDS 686 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEET
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEEEC
Confidence 46789999999999999999999999999999999999999999989999999999998765 4556668999999999
Q ss_pred CCCceEeeecCCCCCeEEEEECCC--CCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEcCCe
Q psy16316 95 HDNKYIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNSDT 171 (335)
Q Consensus 95 ~~~~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~ 171 (335)
.+++.+..+.+|...|.+++|+|+ +..+++|+.|+.|++||++++.+...+ .+...+..+.|+|++.++++++.|++
T Consensus 687 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence 999999999999999999999994 568999999999999999998877654 34455677899999999999999999
Q ss_pred EEEEEccCCCCCceeeEEe----------ccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCC
Q psy16316 172 IKLYDVRSFDKGPFSNFKF----------AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKG 241 (335)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~ 241 (335)
|++||++.... ...... .......+.+++|+|++..+++++ ++.+.+||+.++.....+. ..+..
T Consensus 767 v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~--~~~~~ 841 (1249)
T 3sfz_A 767 LRLWDVRSANE--RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIH--TGHHS 841 (1249)
T ss_dssp EEEEEGGGTEE--EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEE--CSSSS
T ss_pred EEEEeCCCCcc--cceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEc--CCCCC
Confidence 99999976321 111110 011123467789999999999887 6789999999998777664 23556
Q ss_pred CceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 242 CPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 242 ~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
.+.+++|+|+++++++|+.||.|++||..++.....+. +|.++|.+++|+|++.++++++ +.+++|...
T Consensus 842 ~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 842 TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 78899999999999999999999999999998887774 6999999999999999999987 569999764
No 62
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.6e-35 Score=271.64 Aligned_cols=287 Identities=18% Similarity=0.265 Sum_probs=234.1
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
..++...+.+|.+.|.++.|+|++ +|++|+.||+|++||+++++....+..|...+..+++.+.++...+++++.|+++
T Consensus 151 ~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i 229 (464)
T 3v7d_B 151 NKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCE
T ss_pred CCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcE
Confidence 445677899999999999999998 9999999999999999999998888889999999999987777788888899999
Q ss_pred EEEEcCCCc-----------------------eEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE
Q psy16316 90 RYLSLHDNK-----------------------YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH 146 (335)
Q Consensus 90 ~~~~~~~~~-----------------------~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~ 146 (335)
++||+.++. .+..+.+|...|.++ +++++.+++|+.|+.|++||++++++...+.
T Consensus 230 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 307 (464)
T 3v7d_B 230 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 307 (464)
T ss_dssp EEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 999998765 255788999999988 4667899999999999999999887766553
Q ss_pred -ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECC
Q psy16316 147 -VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAY 225 (335)
Q Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~ 225 (335)
+...+..+.++|++.++++|+.|++|++||+++.. .. .....+...+.+++++ +.++++++.|+.|++||+.
T Consensus 308 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--~~---~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~ 380 (464)
T 3v7d_B 308 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE--LM---YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAN 380 (464)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE--EE---EEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EE---EEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECC
Confidence 34456678899999999999999999999997632 22 2223455667888887 5899999999999999999
Q ss_pred CCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--c
Q psy16316 226 NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--T 303 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~ 303 (335)
+++...... +...+..++|+|++++|++|+ ||.|++||+.++..+......|.++|++++|+++ .++++++ +
T Consensus 381 ~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~-~l~~~~~~~g 454 (464)
T 3v7d_B 381 DYSRKFSYH----HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDG 454 (464)
T ss_dssp TCCEEEEEE----CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEETT-EEEEEEEETT
T ss_pred CCceeeeec----CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEecCC-EEEEEEEeCC
Confidence 887654442 233456689999999999999 8999999999998877655678999999999843 3444433 3
Q ss_pred eeEEecccc
Q psy16316 304 NLAFWIPTY 312 (335)
Q Consensus 304 ~~~~w~~~~ 312 (335)
.+.+|++++
T Consensus 455 ~~~i~~ldf 463 (464)
T 3v7d_B 455 QSFLEILDF 463 (464)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEeec
Confidence 456666554
No 63
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.1e-35 Score=280.75 Aligned_cols=296 Identities=16% Similarity=0.199 Sum_probs=219.5
Q ss_pred cceeeeccCCcc-EEEEEECC--CCCEEEEecCCCeEEEEEccCC--------cceeeeecccccceEEEEecCCCee--
Q psy16316 12 KVAKLFRENTDK-ITSIDYSA--DGLLLISCSEDDQIVIYDCELG--------TNKRTVFSKKYGVDLIRFTHAKQAA-- 78 (335)
Q Consensus 12 ~~~~~~~~h~~~-V~~v~~s~--~g~~lasgs~Dg~i~lwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (335)
+..+.|.+|.+. |++++|+| +|++||+|+.||+|++||+.++ .....+..+...+..++|++++...
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence 577889999999 99999999 9999999999999999999755 4444555556666666666554321
Q ss_pred -----------------------------------------EEeecCCCCeEEEEEcCCCceEeeecCCCC---CeEEEE
Q psy16316 79 -----------------------------------------IHASTKIDDTVRYLSLHDNKYIRYFPGHTK---KVNSLC 114 (335)
Q Consensus 79 -----------------------------------------~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~---~V~~~~ 114 (335)
.+++++.|+.+++||+.+++.+..+.+|.. .|.+++
T Consensus 134 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 213 (615)
T 1pgu_A 134 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE 213 (615)
T ss_dssp EECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred eccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEE
Confidence 455666789999999999999999999999 999999
Q ss_pred ECCC-CCEEEEeeCCCcEEEeecCCCCceeEE-----EecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeE
Q psy16316 115 LSPI-DDTFISGSYDKTVRLWDLRSPNCQGIM-----HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNF 188 (335)
Q Consensus 115 ~~~~-~~~l~s~s~D~~i~vWd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~ 188 (335)
|+|+ +++|++++.|+.|++||+++++....+ .+...+..+.|+ ++.++++++.|+.+++||+++.. ....+
T Consensus 214 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~--~~~~~ 290 (615)
T 1pgu_A 214 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSK--CVQKW 290 (615)
T ss_dssp ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTE--EEEEE
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCc--EEEEE
Confidence 9999 999999999999999999998877665 344556677888 99999999999999999997532 11111
Q ss_pred Eecc-CCCccce--------------------------------------------------------------------
Q psy16316 189 KFAA-EKECDWT-------------------------------------------------------------------- 199 (335)
Q Consensus 189 ~~~~-~~~~~~~-------------------------------------------------------------------- 199 (335)
.... .....+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~ 370 (615)
T 1pgu_A 291 TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQD 370 (615)
T ss_dssp ECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECC
T ss_pred cCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCc
Confidence 1110 0000111
Q ss_pred ------EEEE----------------------------------ccC---------------------------------
Q psy16316 200 ------GIKF----------------------------------SAD--------------------------------- 206 (335)
Q Consensus 200 ------~~~~----------------------------------s~~--------------------------------- 206 (335)
+++| +|+
T Consensus 371 ~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (615)
T 1pgu_A 371 HSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 450 (615)
T ss_dssp CCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred ccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce
Confidence 1112 111
Q ss_pred -----CCEEEEEeC-CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC
Q psy16316 207 -----GKYILISTN-GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA 280 (335)
Q Consensus 207 -----~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~ 280 (335)
++++++++. ++.|++||+.+++... .....+...+.+++|+|++++|++|+.||.|++||+.++.....+..
T Consensus 451 ~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 528 (615)
T 1pgu_A 451 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF--DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA 528 (615)
T ss_dssp EEEECSSEEEEEETTTSCEEEEETTEEEEEE--ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC
T ss_pred EEEEcCCEEEEeecCCCeEEEEECCCccccc--cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec
Confidence 222333333 4444444444332221 11233556788999999999999999999999999999988776654
Q ss_pred CCCCCeEEEEeCC----------CCcEEEeee--ceeEEecccc
Q psy16316 281 DHPSPVQTIQFNP----------KFNMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 281 ~h~~~v~~v~~sp----------~~~~~~s~~--~~~~~w~~~~ 312 (335)
.|..+|++++|+| ++.++++++ +.+++|....
T Consensus 529 ~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 572 (615)
T 1pgu_A 529 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 572 (615)
T ss_dssp CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCC
Confidence 4999999999999 999999997 5699997643
No 64
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-35 Score=303.89 Aligned_cols=293 Identities=20% Similarity=0.291 Sum_probs=244.3
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
..+....+.+|.+.|++++|+|+|++||+|+.||+|++||+.+++....+..|...+..++|.++....++++++.|+.+
T Consensus 646 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v 725 (1249)
T 3sfz_A 646 TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725 (1249)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCE
T ss_pred CCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeE
Confidence 34556788999999999999999999999999999999999999999999999999999999998788888888999999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec--------------CCcceEE
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS--------------GSRPIAA 155 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~--------------~~~~~~~ 155 (335)
++||+.+++++..+.+|...|++++|+|+++.|++++.|++|++||++++......... .....++
T Consensus 726 ~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 805 (1249)
T 3sfz_A 726 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS 805 (1249)
T ss_dssp EEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC
T ss_pred EEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEE
Confidence 99999999999999999999999999999999999999999999999887655443221 1344568
Q ss_pred ECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecc
Q psy16316 156 FDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG 235 (335)
Q Consensus 156 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 235 (335)
|+|++..+++++ ++.+.+||+.+.. ... .....+...+.+++|+|+++++++++.++.|++||+.+++....+.+
T Consensus 806 ~s~dg~~l~~~~-~~~v~~~d~~~~~--~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 880 (1249)
T 3sfz_A 806 WSADGDKIIVAA-KNKVLLFDIHTSG--LLA--EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG 880 (1249)
T ss_dssp BCTTSSEEEEEE-TTEEEEEETTTCC--EEE--EEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred ECCCCCEEEEEc-CCcEEEEEecCCC--cee--EEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCC
Confidence 999999999887 6899999997632 122 22234556778999999999999999999999999999988777765
Q ss_pred cccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC---------------------------------------------
Q psy16316 236 FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE--------------------------------------------- 270 (335)
Q Consensus 236 ~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~--------------------------------------------- 270 (335)
|...+.+++|+|++++|++++.||.|++|+..
T Consensus 881 ---h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1249)
T 3sfz_A 881 ---HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 957 (1249)
T ss_dssp ---CSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEE
T ss_pred ---CccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEE
Confidence 44567788888888888888888888888742
Q ss_pred ----------------------------------CCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 271 ----------------------------------KGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 271 ----------------------------------~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
++.....+ .+|.+.|++++|+|+++++++++ +.+++|...
T Consensus 958 ~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A 958 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG-VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC-CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETT
T ss_pred EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec-ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 22222222 35889999999999999999886 568999764
No 65
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.7e-35 Score=264.30 Aligned_cols=300 Identities=20% Similarity=0.298 Sum_probs=232.7
Q ss_pred cceeeeccCCccEEEEEECC-CCCEEEEecCCCeEEEEEccCCcceeeee-------------cccccceEEEEecCCCe
Q psy16316 12 KVAKLFRENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCELGTNKRTVF-------------SKKYGVDLIRFTHAKQA 77 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 77 (335)
+..+.+++|.+.|++++|+| +|++||+|+.||+|++||++++....... .|...+..++|.+....
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 44567889999999999999 99999999999999999999887655443 37788999999884332
Q ss_pred eEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCC---CEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcce
Q psy16316 78 AIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID---DTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPI 153 (335)
Q Consensus 78 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~---~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~ 153 (335)
++++++.|+.+++||+.+++.+..+. |...+.++.++|.+ .++++++.|+.|++||++++.....+. +...+..
T Consensus 114 -~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~ 191 (408)
T 4a11_B 114 -MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA 191 (408)
T ss_dssp -CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEE
T ss_pred -EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEE
Confidence 34556679999999999999888876 78899999999854 499999999999999999887766553 4455677
Q ss_pred EEECCCCC-EEEEEEcCCeEEEEEccCCCCCceeeEE------------eccCCCccceEEEEccCCCEEEEEeCCCeEE
Q psy16316 154 AAFDPEGL-IFGVGVNSDTIKLYDVRSFDKGPFSNFK------------FAAEKECDWTGIKFSADGKYILISTNGSIIR 220 (335)
Q Consensus 154 ~~~~~~~~-~~~~~~~d~~v~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~ 220 (335)
+.++|++. ++++++.|+.|++||++.... +...+. ....+...+.+++|+|++++|++++.|+.|+
T Consensus 192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 270 (408)
T 4a11_B 192 VSWSPRYDYILATASADSRVKLWDVRRASG-CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270 (408)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTCSSC-CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEECCCCCcEEEEEcCCCcEEEEECCCCCc-ccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEE
Confidence 89999988 689999999999999986431 111110 0123445678999999999999999999999
Q ss_pred EEECCCCeeeeeecccccC--CCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEE
Q psy16316 221 TFDAYNGQCLQTLAGFLNN--KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMM 298 (335)
Q Consensus 221 i~d~~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~ 298 (335)
+||+.+++.......+... ............+..+++++.|+.|++||+.++.....+. +|.++|++++|+|++++|
T Consensus 271 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l 349 (408)
T 4a11_B 271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK-GHYKTVDCCVFQSNFQEL 349 (408)
T ss_dssp EEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC-CCSSCEEEEEEETTTTEE
T ss_pred EEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec-cCCCeEEEEEEcCCCCEE
Confidence 9999998765544332111 1111112223345567777889999999999998888774 699999999999999999
Q ss_pred Eeee--ceeEEeccccccc
Q psy16316 299 ASAC--TNLAFWIPTYLSN 315 (335)
Q Consensus 299 ~s~~--~~~~~w~~~~~~~ 315 (335)
++++ +.+++|.++..+.
T Consensus 350 ~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 350 YSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp EEEETTSCEEEEEECC---
T ss_pred EEECCCCeEEEEeCCCCCc
Confidence 9996 5699998755443
No 66
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3e-35 Score=265.98 Aligned_cols=243 Identities=19% Similarity=0.243 Sum_probs=200.5
Q ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe
Q psy16316 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 101 (335)
..|++++|+|+|++||+|+.|++|+|||+++++....+.+|...+..++|.+++. .+++++.|+++++||+.+++...
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~ 201 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSL 201 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEE
Confidence 3599999999999999999999999999999998888888999999999998765 45667789999999999998887
Q ss_pred eecCCCCCeEEEEECC-CCCEEEEeeCCCcEEEeecCCCCceeEEE--------ecCCcceEEECCCCCEEEEEEcCCeE
Q psy16316 102 YFPGHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRSPNCQGIMH--------VSGSRPIAAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 102 ~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~d~~v 172 (335)
.+. |...+.+++++| ++++|++|+.|++|++||++++.+...+. +...+..+.|+|++.++++|+.|++|
T Consensus 202 ~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v 280 (393)
T 1erj_A 202 TLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280 (393)
T ss_dssp EEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 776 567899999999 88999999999999999999887655431 23345678899999999999999999
Q ss_pred EEEEccCCCCCce-------eeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceE
Q psy16316 173 KLYDVRSFDKGPF-------SNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLE 245 (335)
Q Consensus 173 ~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 245 (335)
++||++....... ........+...+.+++|+|++.+|++++.|+.|++||..+++++..+.+| ...+.+
T Consensus 281 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h---~~~v~~ 357 (393)
T 1erj_A 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH---RNSVIS 357 (393)
T ss_dssp EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC---SSCEEE
T ss_pred EEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC---CCCEEE
Confidence 9999975321100 001112234556788999999999999999999999999999988877664 456788
Q ss_pred EEEcC------CCcEEEEEeCCCcEEEEECC
Q psy16316 246 ASFTP------DSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 246 ~~~sp------~~~~l~tgs~dg~v~iwd~~ 270 (335)
++|+| ++++||||+.||+|++|+..
T Consensus 358 v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 358 VAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp EEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 88875 68899999999999999974
No 67
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.8e-35 Score=268.13 Aligned_cols=282 Identities=20% Similarity=0.313 Sum_probs=231.1
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
..++.+.+.+|.+.|.++.|+ +.+|++|+.||+|++||+++++....+..|...+..+.+.. ..+++++.|+.+
T Consensus 148 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~s~dg~i 221 (445)
T 2ovr_B 148 TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE----KRVVSGSRDATL 221 (445)
T ss_dssp TCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET----TEEEEEETTSEE
T ss_pred CCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC----CEEEEEeCCCEE
Confidence 345667899999999999997 67999999999999999999999888888888999988853 246677789999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEc
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 168 (335)
++||+.+++.+..+.+|...|.++++ +++.+++|+.|+.|++||++++++...+. +...+..+.+ ++.++++++.
T Consensus 222 ~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~ 297 (445)
T 2ovr_B 222 RVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL 297 (445)
T ss_dssp EEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET
T ss_pred EEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC
Confidence 99999999999999999999999999 67899999999999999999877665543 2223333444 8899999999
Q ss_pred CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEE
Q psy16316 169 SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF 248 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 248 (335)
|+.|++||+++.. .... ...+...+.++. ++++++++++.|+.|++||+++++++..+..+..+...+.+++|
T Consensus 298 d~~i~i~d~~~~~--~~~~---~~~~~~~v~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 370 (445)
T 2ovr_B 298 DTSIRVWDVETGN--CIHT---LTGHQSLTSGME--LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 370 (445)
T ss_dssp TSCEEEEETTTCC--EEEE---ECCCCSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE
T ss_pred CCeEEEEECCCCC--EEEE---EcCCcccEEEEE--EeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEE
Confidence 9999999998642 2222 223334444444 46789999999999999999999999888876667777888888
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCeeEEEeC----CCCCCCeEEEEeCCCCcEEEeeece------eEEecc
Q psy16316 249 TPDSKYVISGSTDGRIHIWNAEKGFKVCVLD----ADHPSPVQTIQFNPKFNMMASACTN------LAFWIP 310 (335)
Q Consensus 249 sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~----~~h~~~v~~v~~sp~~~~~~s~~~~------~~~w~~ 310 (335)
+ +++|++|+.||.|++||+.++..+..+. ..|.++|++++|+|++.++|+|+.+ +.+|..
T Consensus 371 ~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df 440 (445)
T 2ovr_B 371 N--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 440 (445)
T ss_dssp C--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred C--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEEC
Confidence 6 5799999999999999999988776651 3578899999999999999998633 555654
No 68
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.3e-34 Score=264.08 Aligned_cols=276 Identities=18% Similarity=0.276 Sum_probs=223.4
Q ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee--cccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE
Q psy16316 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF--SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI 100 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 100 (335)
.++.|+||+++ +||+|. |++|+|||.++++....+. .|...|.+++|++++. .+++++.|++|++||+.+++.+
T Consensus 107 y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEE
T ss_pred cceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcEE
Confidence 36779999864 777775 9999999999998877654 4556799999998765 5667778999999999999999
Q ss_pred eeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCcee-EE-EecCCcceEEECCCCCEEEEEEcCCeEEEEEcc
Q psy16316 101 RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG-IM-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVR 178 (335)
Q Consensus 101 ~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 178 (335)
+.+.+|...|.+++++ +..|++|+.|+.+++||.+...... .+ .+........+.|++.++++++.|+.+++||..
T Consensus 183 ~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 183 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred EEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence 9999999999999885 5799999999999999998755432 22 234455667899999999999999999999998
Q ss_pred CCCCCceeeEEeccCCCccceEEEEccCCCEE-EE--EeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEE
Q psy16316 179 SFDKGPFSNFKFAAEKECDWTGIKFSADGKYI-LI--STNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYV 255 (335)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~--~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 255 (335)
....... .......+...+.+++|+|++..+ ++ ++.|+.|++||+.++++...+.. ...+.++.|+|+++.+
T Consensus 261 ~~~~~~~-~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~----~~~v~~~~~~~~~~~l 335 (420)
T 4gga_A 261 PGEGGWV-PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA----HSQVCSILWSPHYKEL 335 (420)
T ss_dssp CCSSCSC-CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC----SSCEEEEEEETTTTEE
T ss_pred cccccce-eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc----ccceeeeeecCCCCeE
Confidence 6432211 122234455678899999976644 44 34689999999999998887754 2457789999999988
Q ss_pred EEEe--CCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 256 ISGS--TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 256 ~tgs--~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
++++ .|+.|+|||..++.++..+. +|.++|++++|+|+|.+|+||+ ++|++|..
T Consensus 336 v~~sg~~d~~I~iwd~~~~~~v~~l~-gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 336 ISGHGFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp EEEECTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 8765 79999999999999888885 6999999999999999999997 57999975
No 69
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-35 Score=290.43 Aligned_cols=294 Identities=18% Similarity=0.125 Sum_probs=219.7
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcce-----------eeeecccccceEEEEecCCCeeEE
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNK-----------RTVFSKKYGVDLIRFTHAKQAAIH 80 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 80 (335)
++...+. |.+.|++++|+|++.+|++|+.||+|++||++++... ....+|...|..++|+|+.. ..+
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~-~~l 167 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI-GTV 167 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE-EEE
T ss_pred cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC-CEE
Confidence 3445564 7789999999999999999999999999999987653 12244667899999998643 345
Q ss_pred eecCCCCeEEEEEcCCCceEeeecCC------------------CCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCce
Q psy16316 81 ASTKIDDTVRYLSLHDNKYIRYFPGH------------------TKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ 142 (335)
Q Consensus 81 ~~~~~d~~i~~~~~~~~~~~~~~~~H------------------~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~ 142 (335)
++++.|+.+ +||+.+++.++.+.+| ...|++++|+|++++|+||+.|++|++||++++++.
T Consensus 168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 567789999 9999999998888766 578999999999999999999999999998654421
Q ss_pred eE------------------------------EE------------ec-C-------Cc---------------------
Q psy16316 143 GI------------------------------MH------------VS-G-------SR--------------------- 151 (335)
Q Consensus 143 ~~------------------------------~~------------~~-~-------~~--------------------- 151 (335)
.. +. .. . ..
T Consensus 247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~ 326 (902)
T 2oaj_A 247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKN 326 (902)
T ss_dssp EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH
T ss_pred EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhh
Confidence 10 00 00 0 00
Q ss_pred ---------------------------------------c---------e------------------------------
Q psy16316 152 ---------------------------------------P---------I------------------------------ 153 (335)
Q Consensus 152 ---------------------------------------~---------~------------------------------ 153 (335)
. +
T Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~ 406 (902)
T 2oaj_A 327 YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATT 406 (902)
T ss_dssp HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEE
T ss_pred hhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeE
Confidence 0 0
Q ss_pred ----------------------------------EEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEec------cC
Q psy16316 154 ----------------------------------AAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA------AE 193 (335)
Q Consensus 154 ----------------------------------~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~------~~ 193 (335)
++++|+++++++|+.|++|++||+..........+... ..
T Consensus 407 ~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~ 486 (902)
T 2oaj_A 407 SMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKA 486 (902)
T ss_dssp EEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCS
T ss_pred EEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCC
Confidence 01134566788888888888888765321110011100 13
Q ss_pred CCccceEEEEccCCCEEEEEeCCCeEEEEECCCCe---------------------------------------------
Q psy16316 194 KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQ--------------------------------------------- 228 (335)
Q Consensus 194 ~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~--------------------------------------------- 228 (335)
+...+.+++|+|++++||+++.|++|++||+.+++
T Consensus 487 h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 566 (902)
T 2oaj_A 487 KELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFM 566 (902)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEE
T ss_pred CCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccc
Confidence 45578999999999999999999999999987662
Q ss_pred eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEE--e--C-CCCCCCeEEEEeC-----CCC---
Q psy16316 229 CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCV--L--D-ADHPSPVQTIQFN-----PKF--- 295 (335)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~--~--~-~~h~~~v~~v~~s-----p~~--- 295 (335)
++..+. .|...|.+++||||| +||+|+.|++|++||+..+..+.. + . .+|.+.|++|+|+ |+|
T Consensus 567 ~~~~l~---~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~ 642 (902)
T 2oaj_A 567 PSTAVH---ANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSS 642 (902)
T ss_dssp EEEEEC---CCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEE
T ss_pred eeEEEE---cCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcc
Confidence 233333 366788999999999 999999999999999987765432 1 1 2799999999999 885
Q ss_pred cEEEeee--ceeEEecccc
Q psy16316 296 NMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 296 ~~~~s~~--~~~~~w~~~~ 312 (335)
.+|++|+ +++++|.+.+
T Consensus 643 ~~l~sgs~D~tv~~wd~~p 661 (902)
T 2oaj_A 643 ILMVCGTDMGEVITYKILP 661 (902)
T ss_dssp EEEEEEETTSEEEEEEEEE
T ss_pred eEEEEEecCCcEEEEEEec
Confidence 7899886 6799998743
No 70
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-35 Score=266.42 Aligned_cols=281 Identities=18% Similarity=0.265 Sum_probs=222.3
Q ss_pred cCCccEE--EEEECCCCCEEEEecCCCeEEEEEccCCcceeeeec-ccccceEEEEecCCCeeEEeecCCCCeEEEEEcC
Q psy16316 19 ENTDKIT--SIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 19 ~h~~~V~--~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 95 (335)
+|.+.+. ++.|+ +..+++++.|++|++||+++++....+.. +...+..++|++++. .+++++.|+.+++||+.
T Consensus 89 ~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 89 GIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGS--FLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSS--EEEEEETTSCEEEEETT
T ss_pred CCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCC--EEEEECCCCeEEEEECc
Confidence 6666544 45555 46688899999999999999988776655 677899999998655 45566679999999999
Q ss_pred CCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCC-ceeEE-EecCCcceEEECCCCCEEEEEEcCCeEE
Q psy16316 96 DNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN-CQGIM-HVSGSRPIAAFDPEGLIFGVGVNSDTIK 173 (335)
Q Consensus 96 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 173 (335)
+++.+..+.+|...|.+++|+ ++.|++|+.|+.|++||++... ....+ .+.+.+..+.|+|++.++++|+.|+.|+
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 242 (401)
T 4aez_A 165 SQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ 242 (401)
T ss_dssp TCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Confidence 999999999999999999994 5799999999999999998543 33333 3445567789999999999999999999
Q ss_pred EEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEE-Ee--CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcC
Q psy16316 174 LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILI-ST--NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP 250 (335)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~--~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp 250 (335)
+||++... +.. ....+...+.+++|+|++..+++ ++ .++.|++||+.++++...+. +...+.+++|+|
T Consensus 243 iwd~~~~~--~~~---~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~s~ 313 (401)
T 4aez_A 243 IWDARSSI--PKF---TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD----AGSQVTSLIWSP 313 (401)
T ss_dssp EEETTCSS--EEE---EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEECS
T ss_pred EccCCCCC--ccE---EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe----CCCcEEEEEECC
Confidence 99998632 222 22345567789999998765554 43 59999999999998887774 335688999999
Q ss_pred CCcEEEE--EeCCCcEEEEECCCCeeEEEe-CCCCCCCeEEEEeCCCCcEEEeee--ceeEEecccccc
Q psy16316 251 DSKYVIS--GSTDGRIHIWNAEKGFKVCVL-DADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTYLS 314 (335)
Q Consensus 251 ~~~~l~t--gs~dg~v~iwd~~~~~~~~~~-~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~~~ 314 (335)
++++|++ |+.||.|++||+.++...... ..+|.+.|.+++|+|++.++++++ +.+++|.....+
T Consensus 314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 9999999 558999999999886544332 246899999999999999999886 568999764433
No 71
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.4e-34 Score=254.56 Aligned_cols=278 Identities=15% Similarity=0.165 Sum_probs=224.8
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCce
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY 99 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 99 (335)
|.++|.+++|+|||++++++..++.+.+|+............|...+..++|++++.. +++++ |+.+++|++.+++.
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRH--VYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSE--EEEEC-BSEEEEEETTSTTC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcE--EEEcC-CCeEEEEECCCCCc
Confidence 5678999999999999999988888877766655555555678889999999987654 44445 99999999987653
Q ss_pred E---eeec--CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE---EecCCcceEEECCCCCEEEEEEcCCe
Q psy16316 100 I---RYFP--GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM---HVSGSRPIAAFDPEGLIFGVGVNSDT 171 (335)
Q Consensus 100 ~---~~~~--~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~ 171 (335)
. ..+. +|...|.+++|+|++++|++++.|+.|++||+.+++..... .+......+.++|++.++++++.++.
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 164 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN 164 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCc
Confidence 3 3333 79999999999999999999999999999999987643222 22334567789999999999999999
Q ss_pred EEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCC
Q psy16316 172 IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251 (335)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 251 (335)
|++||+++.. . ......+...+.+++|+|+++++++++.++.|++||+++++....+. +...+.+++|+|+
T Consensus 165 v~~~d~~~~~--~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~~ 235 (337)
T 1gxr_A 165 IAVWDLHNQT--L---VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCPT 235 (337)
T ss_dssp EEEEETTTTE--E---EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECTT
T ss_pred EEEEeCCCCc--e---eeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec----CCCceEEEEECCC
Confidence 9999997632 1 22223345678899999999999999999999999999998777653 3456788999999
Q ss_pred CcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 252 SKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
+++|++++.|+.|++||+.++.... + ..|..+|.+++|+|+++++++++ +.+++|...
T Consensus 236 ~~~l~~~~~~~~i~~~~~~~~~~~~-~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 236 GEWLAVGMESSNVEVLHVNKPDKYQ-L-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp SSEEEEEETTSCEEEEETTSSCEEE-E-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEcCCCcEEEEECCCCCeEE-E-cCCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 9999999999999999998876543 3 45899999999999999999886 568899764
No 72
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.7e-34 Score=247.82 Aligned_cols=276 Identities=18% Similarity=0.273 Sum_probs=219.3
Q ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee--cccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE
Q psy16316 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF--SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI 100 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 100 (335)
..++|+||+++ +||+| .|++|+|||++++++.+.+. .|...|..++|++++. .+++++.|++|++|++++++.+
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEE
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeE
Confidence 36789999987 77766 49999999999999887665 4556689999998765 4567778999999999999999
Q ss_pred eeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE--EecCCcceEEECCCCCEEEEEEcCCeEEEEEcc
Q psy16316 101 RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVR 178 (335)
Q Consensus 101 ~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 178 (335)
+.+++|...+.++.+. +..+++++.|+.+++|+.......... .+........+.+++.++++++.|++|++||++
T Consensus 103 ~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 180 (318)
T 4ggc_A 103 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 180 (318)
T ss_dssp EEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred EEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence 9999999998877664 579999999999999998876543222 234445667899999999999999999999998
Q ss_pred CCCCCceeeEEeccCCCccceEEEEccCCCEEE---EEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEE
Q psy16316 179 SFDKGPFSNFKFAAEKECDWTGIKFSADGKYIL---ISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYV 255 (335)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~---~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 255 (335)
+.+..... ..........+..++++|++..++ +++.++.|++||........... +...+..+.|+|+++.+
T Consensus 181 ~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~ 255 (318)
T 4ggc_A 181 PGEGGWVP-LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSPHYKEL 255 (318)
T ss_dssp CBTTBSCC-SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEEETTTTEE
T ss_pred CCcccccc-eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc----ceeeeeeeeecccccce
Confidence 64432211 122233445677889998876443 45667899999999887665443 34557789999999987
Q ss_pred EEEe--CCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecc
Q psy16316 256 ISGS--TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 256 ~tgs--~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~ 310 (335)
++++ .|+.|++||+.++..+..+. +|.++|++++|+|++++||||+ +.+++|..
T Consensus 256 ~~~sg~~d~~i~iwd~~~~~~~~~l~-gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 256 ISGHGFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp EEEECTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 7654 79999999999999888885 6999999999999999999997 56999965
No 73
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.2e-34 Score=272.62 Aligned_cols=289 Identities=17% Similarity=0.279 Sum_probs=212.4
Q ss_pred hcccceeeeccCCc---cEEEEEECCC-CCEEEEecCCCeEEEEEccCCcceeee-e---cccccceEEEEecCCCeeEE
Q psy16316 9 RSYKVAKLFRENTD---KITSIDYSAD-GLLLISCSEDDQIVIYDCELGTNKRTV-F---SKKYGVDLIRFTHAKQAAIH 80 (335)
Q Consensus 9 ~~~~~~~~~~~h~~---~V~~v~~s~~-g~~lasgs~Dg~i~lwd~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~ 80 (335)
+..++...+.+|.+ .|.++.|+|+ |++|++|+.||.|++||+.+++....+ . .+...+..++|. ++. .+
T Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~--~l 267 (615)
T 1pgu_A 191 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQ--KF 267 (615)
T ss_dssp TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSS--EE
T ss_pred CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCC--EE
Confidence 34566778999999 9999999999 999999999999999999999888877 4 778888999998 433 44
Q ss_pred eecCCCCeEEEEEcCCCceEeeec---------------------------------------------CCCCCeEEEEE
Q psy16316 81 ASTKIDDTVRYLSLHDNKYIRYFP---------------------------------------------GHTKKVNSLCL 115 (335)
Q Consensus 81 ~~~~~d~~i~~~~~~~~~~~~~~~---------------------------------------------~H~~~V~~~~~ 115 (335)
++++.|+.+++||+.+++.+..+. +|...|.+++|
T Consensus 268 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 347 (615)
T 1pgu_A 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV 347 (615)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe
Confidence 555567888888887665544443 34444444444
Q ss_pred CCC---------------------------------CCEEEEeeCCCcEEEeecCCCC----------------------
Q psy16316 116 SPI---------------------------------DDTFISGSYDKTVRLWDLRSPN---------------------- 140 (335)
Q Consensus 116 ~~~---------------------------------~~~l~s~s~D~~i~vWd~~~~~---------------------- 140 (335)
|+ ++.|++++.|+.|++||+.++.
T Consensus 348 -~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 426 (615)
T 1pgu_A 348 -NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTND 426 (615)
T ss_dssp -TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETT
T ss_pred -cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCC
Confidence 32 3344444444444444433211
Q ss_pred ------------ceeEEEecCCcceEEECCCCCEEEEEEc-CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCC
Q psy16316 141 ------------CQGIMHVSGSRPIAAFDPEGLIFGVGVN-SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADG 207 (335)
Q Consensus 141 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 207 (335)
....+........++++ +.++++++. ++.+++||+.... ... .....+...+.+++|+|++
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~---~~~-~~~~~~~~~v~~~~~s~~g 500 (615)
T 1pgu_A 427 DDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLE---VSF-DLKTPLRAKPSYISISPSE 500 (615)
T ss_dssp SEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEE---EEE-ECSSCCSSCEEEEEECTTS
T ss_pred CceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcc---ccc-cccCCccCceEEEEECCCC
Confidence 11111112222334444 778889998 9999999987521 111 2334456678999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcC----------CCcEEEEEeCCCcEEEEECCCC-eeEE
Q psy16316 208 KYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP----------DSKYVISGSTDGRIHIWNAEKG-FKVC 276 (335)
Q Consensus 208 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp----------~~~~l~tgs~dg~v~iwd~~~~-~~~~ 276 (335)
++|++++.|+.|++||+.+++++..+.+. +...+.+++|+| ++++||+|+.||.|++||+.++ ....
T Consensus 501 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 578 (615)
T 1pgu_A 501 TYIAAGDVMGKILLYDLQSREVKTSRWAF--RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 578 (615)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEECCSCC--CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE
T ss_pred CEEEEcCCCCeEEEeeCCCCcceeEeecC--CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceech
Confidence 99999999999999999999988776541 456789999999 9999999999999999999987 4555
Q ss_pred EeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 277 VLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 277 ~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
.+ .+|.++|++++|+|++. |++++ +.+++|.+.
T Consensus 579 ~~-~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 579 AL-NAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp ET-TSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred hh-hcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 44 56999999999999999 88886 569999764
No 74
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.9e-34 Score=262.86 Aligned_cols=272 Identities=19% Similarity=0.344 Sum_probs=218.0
Q ss_pred ccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC
Q psy16316 18 RENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN 97 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 97 (335)
.+|.+.|.++.| +|++|++|+.||+|++||+.+++....+.+|...+..+++ + ...+++++.|++|++||+.++
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~--~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--D--ERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--C--SSEEEEEETTSCEEEEESSSC
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--C--CCEEEEEcCCCeEEEEECCCC
Confidence 467788999977 8999999999999999999999998888889999988888 2 336677788999999999999
Q ss_pred ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE--EecCCcceEEECCCCCEEEEEEcCCeEEEE
Q psy16316 98 KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLY 175 (335)
Q Consensus 98 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iw 175 (335)
+.+..+.+|...|.+++|++ +.+++|+.|++|++||++++...... ...+...+..+..++.++++|+.|++|++|
T Consensus 204 ~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw 281 (435)
T 1p22_A 204 EMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW 281 (435)
T ss_dssp CEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred cEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEE
Confidence 99999999999999999975 59999999999999999987655321 122222333344488999999999999999
Q ss_pred EccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEE
Q psy16316 176 DVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYV 255 (335)
Q Consensus 176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 255 (335)
|+++.. ....+ ..+...+.++++ ++.++++++.|+.|++||+++++++..+.+| ...+.+++| ++.+|
T Consensus 282 d~~~~~--~~~~~---~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h---~~~v~~~~~--~~~~l 349 (435)
T 1p22_A 282 NTSTCE--FVRTL---NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH---EELVRCIRF--DNKRI 349 (435)
T ss_dssp ETTTCC--EEEEE---ECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCC---SSCEEEEEC--CSSEE
T ss_pred ECCcCc--EEEEE---cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCC---cCcEEEEEe--cCCEE
Confidence 998642 22222 234456677777 5789999999999999999999998888664 455777777 78899
Q ss_pred EEEeCCCcEEEEECCCCe---------eEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecccc
Q psy16316 256 ISGSTDGRIHIWNAEKGF---------KVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 256 ~tgs~dg~v~iwd~~~~~---------~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~ 312 (335)
++|+.||.|++||+.++. ....+ .+|.++|.+++| ++.++++++ +.+++|.+..
T Consensus 350 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 350 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-VEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-CCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred EEEeCCCcEEEEECCCCCCccccccchheeec-cCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence 999999999999986543 45555 469999999999 567788876 6799998643
No 75
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.9e-34 Score=248.30 Aligned_cols=246 Identities=14% Similarity=0.226 Sum_probs=193.7
Q ss_pred eecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC--CceEeeecCCCCCeEEEEECCC--CCEEEEeeCCCcEEEe
Q psy16316 59 VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD--NKYIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKTVRLW 134 (335)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~--~~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~i~vW 134 (335)
+.+|...|..++|++++. .+++++.|++|++|++.. .+.+..+.+|.+.|++++|+++ +++|+||+.|++|++|
T Consensus 5 ~~~h~~~V~~~~~s~~g~--~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGK--RMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp CCSCSSCEEEEEECTTSS--EEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred ccCCcCceEEEEECCCCC--EEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 456788899999998765 466777899999999974 4678899999999999999864 7899999999999999
Q ss_pred ecCCCCcee--EE-EecCCcceEEECCC--CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC---
Q psy16316 135 DLRSPNCQG--IM-HVSGSRPIAAFDPE--GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD--- 206 (335)
Q Consensus 135 d~~~~~~~~--~~-~~~~~~~~~~~~~~--~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--- 206 (335)
|+++++... .+ .+...+..+.|+|+ +.++++++.|++|++||++........ ....+...+.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~---~~~~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI---IIDAHAIGVNSASWAPATIE 159 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE---EEECCSSCEEEEEECCCC--
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee---eeecccCccceEeecCCccc
Confidence 998775322 22 23445667889997 889999999999999999864221111 12234556889999997
Q ss_pred ----------CCEEEEEeCCCeEEEEECCCCe----eeeeecccccCCCCceEEEEcCCC---cEEEEEeCCCcEEEEEC
Q psy16316 207 ----------GKYILISTNGSIIRTFDAYNGQ----CLQTLAGFLNNKGCPLEASFTPDS---KYVISGSTDGRIHIWNA 269 (335)
Q Consensus 207 ----------~~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~~~~v~~~~~sp~~---~~l~tgs~dg~v~iwd~ 269 (335)
+++|++++.|+.|++||+++++ ....+.+ |...|.+++|+|++ ++||+|+.|++|++||.
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~---H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG---HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC---CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC---CCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 5799999999999999998765 3344443 56678999999985 89999999999999998
Q ss_pred CCCe---eEEEe-CCCCCCCeEEEEeCCCCcEEEeee--ceeEEecccc
Q psy16316 270 EKGF---KVCVL-DADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 270 ~~~~---~~~~~-~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~ 312 (335)
.+.. ....+ ...|+..|.+++|+|++++||+++ +.+++|....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 7642 22222 146889999999999999999886 5699997643
No 76
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.6e-34 Score=278.12 Aligned_cols=248 Identities=21% Similarity=0.319 Sum_probs=203.9
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
.+.+.+|.+.|.++.|+|+|++|+|||.||+|+|||+.++.....+.+|...|..++|++++.. +++++.|++|++||
T Consensus 423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~--l~s~s~D~~i~iwd 500 (694)
T 3dm0_A 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQ--IVSASRDRTIKLWN 500 (694)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSC--EEEEETTSCEEEEC
T ss_pred cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCE--EEEEeCCCEEEEEE
Confidence 3578999999999999999999999999999999999999998889999999999999987654 45667899999999
Q ss_pred cCCCceEee---ecCCCCCeEEEEECCCC--CEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEE
Q psy16316 94 LHDNKYIRY---FPGHTKKVNSLCLSPID--DTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGV 167 (335)
Q Consensus 94 ~~~~~~~~~---~~~H~~~V~~~~~~~~~--~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 167 (335)
......... ..+|...|.+++|+|++ ..|++|+.|++|++||+++.++...+. +.+.+..++++|++.++++|+
T Consensus 501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~ 580 (694)
T 3dm0_A 501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG 580 (694)
T ss_dssp TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 866543332 25799999999999986 589999999999999999887765542 445567789999999999999
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccccc---------
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN--------- 238 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--------- 238 (335)
.|++|++||+++.. .. ........+.+++|+|++.++++++ ++.|++||+++++.+..+..+..
T Consensus 581 ~Dg~i~iwd~~~~~--~~----~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 653 (694)
T 3dm0_A 581 KDGVVLLWDLAEGK--KL----YSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNS 653 (694)
T ss_dssp TTSBCEEEETTTTE--EE----ECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC---------
T ss_pred CCCeEEEEECCCCc--eE----EEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccccccccc
Confidence 99999999997632 11 1122345678999999999887776 45699999999988776643211
Q ss_pred -------CCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 239 -------NKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 239 -------~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
+...+.+++|+|+|++|++|+.||.|++|++.
T Consensus 654 ~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 654 GPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 11235679999999999999999999999985
No 77
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.3e-34 Score=257.91 Aligned_cols=255 Identities=18% Similarity=0.259 Sum_probs=206.7
Q ss_pred ceeeecc-CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 13 VAKLFRE-NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 13 ~~~~~~~-h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
..+.+.. |.+.|++++|+|+|.+|++|+.||.|++||+++++....+..|...+..++|.. ..+++++.|+.+++
T Consensus 125 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~i 200 (401)
T 4aez_A 125 VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR----HVLSSGSRSGAIHH 200 (401)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET----TEEEEEETTSEEEE
T ss_pred EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC----CEEEEEcCCCCEEE
Confidence 3445554 899999999999999999999999999999999998888888999999999943 36677778999999
Q ss_pred EEcC-CCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCC-CEEEEEE-
Q psy16316 92 LSLH-DNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEG-LIFGVGV- 167 (335)
Q Consensus 92 ~~~~-~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~- 167 (335)
||+. ....+..+.+|...|.+++|+|++++|++|+.|+.|++||++++.....+ .+...+..+.|+|++ .++++++
T Consensus 201 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g 280 (401)
T 4aez_A 201 HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG 280 (401)
T ss_dssp EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECC
T ss_pred EecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecC
Confidence 9998 56778889999999999999999999999999999999999987776554 344556778999965 6677765
Q ss_pred -cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe--CCCeEEEEECCCCeeeeeecccccCCCCce
Q psy16316 168 -NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST--NGSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 168 -~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 244 (335)
.|+.|++||+++.. ....+ .....+.+++|+|+++++++++ .++.|++||+.+++...... ...+...+.
T Consensus 281 s~d~~i~i~d~~~~~--~~~~~----~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~-~~~h~~~v~ 353 (401)
T 4aez_A 281 TMDKQIHFWNAATGA--RVNTV----DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD-IPAHDTRVL 353 (401)
T ss_dssp TTTCEEEEEETTTCC--EEEEE----ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE-EECCSSCCC
T ss_pred CCCCEEEEEECCCCC--EEEEE----eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE-ecCCCCCEE
Confidence 79999999998632 22222 2345678999999999999954 79999999999876554432 233556788
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEe
Q psy16316 245 EASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVL 278 (335)
Q Consensus 245 ~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~ 278 (335)
+++|+|++++|++++.||.|++|++.++......
T Consensus 354 ~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 354 YSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 9999999999999999999999999888765543
No 78
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=8.6e-34 Score=253.04 Aligned_cols=288 Identities=11% Similarity=0.119 Sum_probs=205.5
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
..++.+.+++|.+.|.+++|+|||++||+|+.|+ ++|||+++++..... +..++..+.+.+..+.. +.+++.|+++
T Consensus 8 ~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~d~~v 83 (355)
T 3vu4_A 8 TRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ--EMRHLSKVRMLHRTNYV-AFVTGVKEVV 83 (355)
T ss_dssp -----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE--ECSCCCEEEECTTSSEE-EEECSSTTEE
T ss_pred ccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee--ecCCeEEEEEcCCCCEE-EEEECCccEE
Confidence 3445566789999999999999999999998775 789999877654332 22357778887766544 3445568899
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCC-CceeEEEecCCcceEEECCCCCEEEE--E
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP-NCQGIMHVSGSRPIAAFDPEGLIFGV--G 166 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 166 (335)
++||+.+++.+..+. |...|.+++++++. ++.+ .|+.|++||+.+. +....+.. .....++++ .+++. |
T Consensus 84 ~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg 155 (355)
T 3vu4_A 84 HIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNE 155 (355)
T ss_dssp EEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEES
T ss_pred EEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCC
Confidence 999999999998887 67799999998863 4333 4889999999987 55443333 334556666 55555 5
Q ss_pred EcCCeEEEEEccCCCCC------c----eee-EEeccCCCccceEEEEccCCCEEEEEeCCCe-EEEEECCCCeeeeeec
Q psy16316 167 VNSDTIKLYDVRSFDKG------P----FSN-FKFAAEKECDWTGIKFSADGKYILISTNGSI-IRTFDAYNGQCLQTLA 234 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~~------~----~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~ 234 (335)
+.+++|++||++..... . ... ......+...+.+++|+|++++|++++.|++ |++||+++++++..+.
T Consensus 156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~ 235 (355)
T 3vu4_A 156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR 235 (355)
T ss_dssp SCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE
T ss_pred CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence 78999999999863200 0 000 1223456677899999999999999999998 9999999999988876
Q ss_pred -ccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCee--EE--------------------EeCCCCCCCeEEEEe
Q psy16316 235 -GFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK--VC--------------------VLDADHPSPVQTIQF 291 (335)
Q Consensus 235 -~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~--~~--------------------~~~~~h~~~v~~v~~ 291 (335)
+. |...+.+++|+|++++|++|+.|++|++||+..+.. .. .+...+..+...++|
T Consensus 236 ~g~--h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (355)
T 3vu4_A 236 RGL--DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW 313 (355)
T ss_dssp CTT--CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEE
T ss_pred cCC--CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEE
Confidence 31 446788999999999999999999999999875421 11 111222234467999
Q ss_pred CCCCcEEEeee--ceeEEeccc
Q psy16316 292 NPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 292 sp~~~~~~s~~--~~~~~w~~~ 311 (335)
+|+++++++++ +.+++|...
T Consensus 314 ~~d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 314 ISESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp SSSSEEEEEETTTTEEEEEEEE
T ss_pred eCCCCEEEEEeCCCeEEEEEEE
Confidence 99999999885 557777653
No 79
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9.1e-34 Score=260.17 Aligned_cols=278 Identities=22% Similarity=0.397 Sum_probs=226.0
Q ss_pred cccceeeeccCCccE-EEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 10 SYKVAKLFRENTDKI-TSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V-~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
.++..+.+++|.+.| .+ ++++|++|++|+.||+|++||+.+++....+.+|...+..+.+.. ..+++++.|++
T Consensus 107 ~~~~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~~~dg~ 180 (445)
T 2ovr_B 107 ELKSPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRT 180 (445)
T ss_dssp CCCCCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSC
T ss_pred CcceeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC----CEEEEEeCCCe
Confidence 355678899999976 55 455799999999999999999999999988888999999999873 26677788999
Q ss_pred EEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEE
Q psy16316 89 VRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGV 167 (335)
Q Consensus 89 i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 167 (335)
|++||+.+++.+..+.+|...|.+++++ ++.+++|+.|++|++||+.++++...+. +...+..+.+ ++.++++|+
T Consensus 181 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~ 256 (445)
T 2ovr_B 181 LKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGA 256 (445)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEE
T ss_pred EEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEc
Confidence 9999999999999999999999999996 4689999999999999999988766553 2333334444 788999999
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEE
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 247 (335)
.|+.|++||+++.. .. .....+...+.+++| ++.++++++.|+.|++||+++++++..+.++ ...+.++.
T Consensus 257 ~dg~i~iwd~~~~~--~~---~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~v~~~~ 326 (445)
T 2ovr_B 257 YDFMVKVWDPETET--CL---HTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH---QSLTSGME 326 (445)
T ss_dssp TTSCEEEEEGGGTE--EE---EEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC---CSCEEEEE
T ss_pred CCCEEEEEECCCCc--Ee---EEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC---cccEEEEE
Confidence 99999999997632 12 222344556777887 8899999999999999999999988887654 33444454
Q ss_pred EcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC--CCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 248 FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA--DHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 248 ~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~--~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
+++++|++|+.||.|++||+.++.....+.. .|..+|.+++|++ .++++++ +.+++|.+.
T Consensus 327 --~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 327 --LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp --EETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS--SEEEEEETTSEEEEEETT
T ss_pred --EeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC--CEEEEEeCCCeEEEEECC
Confidence 4677999999999999999998887776643 4889999999975 6788776 569999753
No 80
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.2e-34 Score=262.62 Aligned_cols=284 Identities=15% Similarity=0.190 Sum_probs=221.3
Q ss_pred cEEEEEECCCCC-EEEEecCCCeEEEEEccCCc----ceeeeecccccceEEEEec-CCCeeEEeecCCCCeEEEEEcCC
Q psy16316 23 KITSIDYSADGL-LLISCSEDDQIVIYDCELGT----NKRTVFSKKYGVDLIRFTH-AKQAAIHASTKIDDTVRYLSLHD 96 (335)
Q Consensus 23 ~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~i~~~~~~~ 96 (335)
....++++|+.. ++++|+.||.|+|||+.... ....+.+|...|..++|++ +.. ++++++.|++|++|++.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECCT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEccC
Confidence 345688898876 45578999999999996542 3345567888999999998 443 556667899999999998
Q ss_pred C-------ceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEE---ecCCcceEEECCCCCEEEE
Q psy16316 97 N-------KYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMH---VSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 97 ~-------~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 165 (335)
+ +.+..+.+|...|.+++|+|++ ++|++++.|++|++||++++++...+. +...+..+.|+|++.++++
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 193 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICT 193 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEE
Confidence 7 5678899999999999999998 699999999999999999887766552 3445667899999999999
Q ss_pred EEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEE---eCCCeEEEEECCCCeeeeeecccccCCCC
Q psy16316 166 GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIS---TNGSIIRTFDAYNGQCLQTLAGFLNNKGC 242 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~---~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 242 (335)
++.|+.|++||++... ....+. .......+..+.|+|++.+|+++ +.++.|++||+++++....... ..+...
T Consensus 194 ~~~d~~i~iwd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~ 269 (402)
T 2aq5_A 194 SCRDKRVRVIEPRKGT--VVAEKD-RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE-LDTSSG 269 (402)
T ss_dssp EETTSEEEEEETTTTE--EEEEEE-CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE-CCCCSS
T ss_pred EecCCcEEEEeCCCCc--eeeeec-cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe-ccCCCc
Confidence 9999999999998632 222211 11222236789999999999998 7899999999998764221211 123456
Q ss_pred ceEEEEcCCCcEEE-EEeCCCcEEEEECCCCee-EEEe-CCCCCCCeEEEEeCCCCcEEEeeeceeEEecccc
Q psy16316 243 PLEASFTPDSKYVI-SGSTDGRIHIWNAEKGFK-VCVL-DADHPSPVQTIQFNPKFNMMASACTNLAFWIPTY 312 (335)
Q Consensus 243 v~~~~~sp~~~~l~-tgs~dg~v~iwd~~~~~~-~~~~-~~~h~~~v~~v~~sp~~~~~~s~~~~~~~w~~~~ 312 (335)
+..++|+|++++|+ +|+.|+.|++||+.++.. ...+ ...|..+|.+++|+|++.++++++..+++|.+..
T Consensus 270 v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~ 342 (402)
T 2aq5_A 270 VLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHE 342 (402)
T ss_dssp CEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEET
T ss_pred eeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecceeEEEEEcCC
Confidence 88999999999886 566899999999987762 2222 1226789999999999999999989999998743
No 81
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=255.04 Aligned_cols=256 Identities=11% Similarity=0.052 Sum_probs=206.1
Q ss_pred ccCCccEEEEEECCC---CCEEEEecCCCeEEEEEccCCc-ceeeeecccccceEEEEec----CCCeeEEeecCCCCeE
Q psy16316 18 RENTDKITSIDYSAD---GLLLISCSEDDQIVIYDCELGT-NKRTVFSKKYGVDLIRFTH----AKQAAIHASTKIDDTV 89 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~---g~~lasgs~Dg~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~i 89 (335)
.+|.+.|.++.|+|+ |.+|++|+.||+|++||+++++ ....+..|...+..+.|.+ .++...+++++.|+.+
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 379999999999999 7999999999999999999988 7777788888999997753 2344466777789999
Q ss_pred EEEEcCCCc-eEeeecCCCC----CeEEEE----ECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECC--
Q psy16316 90 RYLSLHDNK-YIRYFPGHTK----KVNSLC----LSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDP-- 158 (335)
Q Consensus 90 ~~~~~~~~~-~~~~~~~H~~----~V~~~~----~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~-- 158 (335)
++||+.+++ .+..+..|.+ .|.+++ |+|++++|++++.|+.|++||+++++......+...+..+.|+|
T Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKD 221 (357)
T ss_dssp EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSS
T ss_pred EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCC
Confidence 999999876 6777766655 899998 78899999999999999999999988766656666777889999
Q ss_pred -CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCC-EEEEEeCCCeEEEEECCCCeee------
Q psy16316 159 -EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK-YILISTNGSIIRTFDAYNGQCL------ 230 (335)
Q Consensus 159 -~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~i~i~d~~~~~~~------ 230 (335)
++.++++++.|+.|++||++...............+...+.+++|+|+++ ++++++.|+.|++||++++...
T Consensus 222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 301 (357)
T 3i2n_A 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE 301 (357)
T ss_dssp SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence 89999999999999999998643222222112224566789999999999 8999999999999998765322
Q ss_pred ----------eeecccccCCCCceEEEEcCCCcEEE-EEeCCCcEEEEECCCCe
Q psy16316 231 ----------QTLAGFLNNKGCPLEASFTPDSKYVI-SGSTDGRIHIWNAEKGF 273 (335)
Q Consensus 231 ----------~~~~~~~~~~~~v~~~~~sp~~~~l~-tgs~dg~v~iwd~~~~~ 273 (335)
+.+.....+...+.+++|+|++++|+ +|+.|+.|++||+.+..
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 22333344567789999999999998 89999999999997654
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.4e-34 Score=258.43 Aligned_cols=258 Identities=13% Similarity=0.133 Sum_probs=213.0
Q ss_pred ccceeeeccCCccEEEEEECCC----C---CEEEEecCCCeEEEEEccCCcc-----eeeeecc-----cccceEEEEe-
Q psy16316 11 YKVAKLFRENTDKITSIDYSAD----G---LLLISCSEDDQIVIYDCELGTN-----KRTVFSK-----KYGVDLIRFT- 72 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~----g---~~lasgs~Dg~i~lwd~~~~~~-----~~~~~~~-----~~~~~~~~~~- 72 (335)
+++...+.+|.+.|.++.|+|+ | .+|++|+.||+|++||+++++. ...+..+ ...+..++|.
T Consensus 52 ~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 131 (397)
T 1sq9_A 52 KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 131 (397)
T ss_dssp GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEee
Confidence 5578889999999999999999 9 9999999999999999999887 7777777 5889999999
Q ss_pred ---cCCCeeEEeecCCCCeEEEEEcCC------CceEe-----ee-------cCCCCCeEEEEECCCCCEEEEeeCCCcE
Q psy16316 73 ---HAKQAAIHASTKIDDTVRYLSLHD------NKYIR-----YF-------PGHTKKVNSLCLSPIDDTFISGSYDKTV 131 (335)
Q Consensus 73 ---~~~~~~~~~~~~~d~~i~~~~~~~------~~~~~-----~~-------~~H~~~V~~~~~~~~~~~l~s~s~D~~i 131 (335)
++... .+++++.|+.+++||+.+ ++.+. .+ ..|...|.+++|+|++ .|++++.|+.|
T Consensus 132 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i 209 (397)
T 1sq9_A 132 SNDRLLSH-RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTV 209 (397)
T ss_dssp CC----CE-EEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEE
T ss_pred ccCCCCce-EEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcE
Confidence 65443 156666799999999998 66666 67 4489999999999999 99999999999
Q ss_pred EEeecCCCCceeEEEe-------cCCcceEEECCCCCEEEEEEcC---CeEEEEEccCCCCCceeeEEecc---------
Q psy16316 132 RLWDLRSPNCQGIMHV-------SGSRPIAAFDPEGLIFGVGVNS---DTIKLYDVRSFDKGPFSNFKFAA--------- 192 (335)
Q Consensus 132 ~vWd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~d---~~v~iwd~~~~~~~~~~~~~~~~--------- 192 (335)
++||+++++....+.. ...+..+.|+|++.++++++.| +.|++||++... ....+....
T Consensus 210 ~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~ 287 (397)
T 1sq9_A 210 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE--RIGSLSVPTHSSQASLGE 287 (397)
T ss_dssp EEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC--EEEEECBC--------CC
T ss_pred EEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc--ccceeccCcccccccccc
Confidence 9999998877766654 5567788999999999999999 999999998632 222221100
Q ss_pred -CCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec------cc------------ccCCCCceEEEEcCCC-
Q psy16316 193 -EKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA------GF------------LNNKGCPLEASFTPDS- 252 (335)
Q Consensus 193 -~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~------~~------------~~~~~~v~~~~~sp~~- 252 (335)
.+...+.+++|+|++++|++++.|+.|++||+.+++++..+. ++ ..|...+.+++|+|++
T Consensus 288 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~ 367 (397)
T 1sq9_A 288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 367 (397)
T ss_dssp BSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence 045678899999999999999999999999999999888887 43 0115678999999998
Q ss_pred ---------cEEEEEeCCCcEEEEECCCC
Q psy16316 253 ---------KYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 253 ---------~~l~tgs~dg~v~iwd~~~~ 272 (335)
++|++|+.||.|++|++.++
T Consensus 368 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 368 RSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp SBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cccccccccceEEEecCCCcEEEEEcCCC
Confidence 79999999999999998765
No 83
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-34 Score=257.55 Aligned_cols=246 Identities=15% Similarity=0.220 Sum_probs=199.6
Q ss_pred CCccEEEEEECCC----CCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEec-CCCeeEEeecCCCCeEEEEEc
Q psy16316 20 NTDKITSIDYSAD----GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTH-AKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 20 h~~~V~~v~~s~~----g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~i~~~~~ 94 (335)
|.+.|++++|+|+ |.+|++|+.||+|++||+++++....+..|...+..++|.+ ++. .+++++.|+.|++||+
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNI 145 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEET
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEe
Confidence 7788999999999 67999999999999999999998888888999999999998 444 4556667999999999
Q ss_pred CCCceEeee---cCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-------------------------
Q psy16316 95 HDNKYIRYF---PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH------------------------- 146 (335)
Q Consensus 95 ~~~~~~~~~---~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~------------------------- 146 (335)
.+++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+++++....+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T 3k26_A 146 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS 225 (366)
T ss_dssp TTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEE
T ss_pred ecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccc
Confidence 999998888 7899999999999999999999999999999998754332111
Q ss_pred ----ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCC---------ceeeEEeccCCCccceEEEEccC--CCEEE
Q psy16316 147 ----VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKG---------PFSNFKFAAEKECDWTGIKFSAD--GKYIL 211 (335)
Q Consensus 147 ----~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~s~~--~~~l~ 211 (335)
+...+..+.++ +.++++++.|+.|++||++..... ..........+...+.+++|+|+ +++|+
T Consensus 226 ~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~ 303 (366)
T 3k26_A 226 TRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA 303 (366)
T ss_dssp ECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE
T ss_pred cccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE
Confidence 23334556665 779999999999999999764320 11112222334456778999999 99999
Q ss_pred EEeCCCeEEEEECCCCeeee----eecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 212 ISTNGSIIRTFDAYNGQCLQ----TLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 212 ~~~~~~~i~i~d~~~~~~~~----~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
+++.++.|++||+.+++... .+..+ .+...+.+++|+|++++|++|+.||.|++||+.
T Consensus 304 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 304 LGNQVGKLYVWDLEVEDPHKAKCTTLTHH-KCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECTTSCEEEEECCSSSGGGCEEEEECCT-TCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEecCCcEEEEECCCCCCccccceEEccc-ccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999999999886543 34332 125678999999999999999999999999975
No 84
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-34 Score=256.71 Aligned_cols=266 Identities=13% Similarity=0.145 Sum_probs=199.5
Q ss_pred EECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC---------CCc
Q psy16316 28 DYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH---------DNK 98 (335)
Q Consensus 28 ~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~---------~~~ 98 (335)
.+.+++.+|+||+.||+|++||+++++....+. ...+..+.+.+. +++++.|+++++|+.. +++
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~~~~~~~~~~~~ 115 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGNQITILDSKTNK 115 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccCceEEeecCCcc
Confidence 445688999999999999999999998776654 344555556554 6677889999999665 555
Q ss_pred eEeeec-CCCCCeEEEEECC--CCCEEEEeeCCCcEEEeecCCCCceeEE--EecCCcceEEECCCCCEEEEEEcCCeEE
Q psy16316 99 YIRYFP-GHTKKVNSLCLSP--IDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIK 173 (335)
Q Consensus 99 ~~~~~~-~H~~~V~~~~~~~--~~~~l~s~s~D~~i~vWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 173 (335)
.++.+. +|.+.|.+++|+| +++++++|+.|++|++||++++++.... +.......++|+|++.++++|+.|++|+
T Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 454443 7889999999999 9999999999999999999998875544 2233467789999999999999999999
Q ss_pred EEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCc--eEEEEcCC
Q psy16316 174 LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCP--LEASFTPD 251 (335)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v--~~~~~sp~ 251 (335)
+||+++..... . .+...+...+.+++|+|++.+|++++++ .|++||++++++...+..+..+...+ .+++|+|+
T Consensus 196 iwd~~~~~~~~-~--~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (343)
T 3lrv_A 196 VYNLSSPDQAS-S--RFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS 271 (343)
T ss_dssp EEESSCTTSCC-E--ECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred EEECCCCCCCc-c--EEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence 99998753210 1 1222356788999999999999999955 99999999987766655432222222 35999999
Q ss_pred CcEEEEEeC-CCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCC---CCcEEEeee--ceeEEec
Q psy16316 252 SKYVISGST-DGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP---KFNMMASAC--TNLAFWI 309 (335)
Q Consensus 252 ~~~l~tgs~-dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp---~~~~~~s~~--~~~~~w~ 309 (335)
+++|++++. |+.|++|++.+..+.... .++..++|+| +...+++++ +.+.++.
T Consensus 272 g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 272 GKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred CCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEE
Confidence 999999998 999999998765433222 4667888888 777777665 4455553
No 85
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-34 Score=282.38 Aligned_cols=207 Identities=14% Similarity=0.191 Sum_probs=157.1
Q ss_pred cCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCce--eEEE----------ecCCcceEEECCCCCEEEEEEcCCe
Q psy16316 104 PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ--GIMH----------VSGSRPIAAFDPEGLIFGVGVNSDT 171 (335)
Q Consensus 104 ~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~~~d~~ 171 (335)
.||...+.+++|+|++++|+||+.|++||+||+.++... ..+. +...+..++|+|+++++|+|+.|++
T Consensus 432 ~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dgt 511 (902)
T 2oaj_A 432 KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGD 511 (902)
T ss_dssp CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSC
T ss_pred cCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcE
Confidence 455555666667889999999999999999999887432 1121 2234667899999999999999999
Q ss_pred EEEEEccCCCCC---------c-------------------------------eeeEEeccCCCccceEEEEccCCCEEE
Q psy16316 172 IKLYDVRSFDKG---------P-------------------------------FSNFKFAAEKECDWTGIKFSADGKYIL 211 (335)
Q Consensus 172 v~iwd~~~~~~~---------~-------------------------------~~~~~~~~~~~~~~~~~~~s~~~~~l~ 211 (335)
|++||+...... . .........+...+.+++|||+| +||
T Consensus 512 V~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lA 590 (902)
T 2oaj_A 512 VVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVG 590 (902)
T ss_dssp EEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEE
T ss_pred EEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEE
Confidence 999999754100 0 01122233466788999999999 999
Q ss_pred EEeCCCeEEEEECCCCeeee--eecccc-cCCCCceEEEEc-----CCC---cEEEEEeCCCcEEEEEC---CCCeeEEE
Q psy16316 212 ISTNGSIIRTFDAYNGQCLQ--TLAGFL-NNKGCPLEASFT-----PDS---KYVISGSTDGRIHIWNA---EKGFKVCV 277 (335)
Q Consensus 212 ~~~~~~~i~i~d~~~~~~~~--~~~~~~-~~~~~v~~~~~s-----p~~---~~l~tgs~dg~v~iwd~---~~~~~~~~ 277 (335)
+++.|++|++||+++...+. .+..+. .|...|.+++|+ ||| ++|++|+.|++|++||+ .+|.....
T Consensus 591 sgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~ 670 (902)
T 2oaj_A 591 IAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQ 670 (902)
T ss_dssp EEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEE
T ss_pred EEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEE
Confidence 99999999999998877653 233443 677889999999 885 89999999999999998 56654443
Q ss_pred eC----CCCCCCeEEEE-eC----------------------CCCcEEEeeeceeEEeccc
Q psy16316 278 LD----ADHPSPVQTIQ-FN----------------------PKFNMMASACTNLAFWIPT 311 (335)
Q Consensus 278 ~~----~~h~~~v~~v~-~s----------------------p~~~~~~s~~~~~~~w~~~ 311 (335)
+. ..|.++|..++ |+ |++.+++++...+++|.+.
T Consensus 671 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~ 731 (902)
T 2oaj_A 671 LMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITGFDDIRLITLG 731 (902)
T ss_dssp EEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEECSSEEEEECTT
T ss_pred ecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEeccceEEEeCc
Confidence 32 22457888887 66 6778899998999999874
No 86
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.2e-34 Score=254.40 Aligned_cols=245 Identities=16% Similarity=0.252 Sum_probs=188.5
Q ss_pred eecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc--eEeeecCCCCCeEEEEECC--CCCEEEEeeCCCcEEEe
Q psy16316 59 VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK--YIRYFPGHTKKVNSLCLSP--IDDTFISGSYDKTVRLW 134 (335)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~H~~~V~~~~~~~--~~~~l~s~s~D~~i~vW 134 (335)
+.+|...|..++|++++. .+++++.|++|++||+.+++ .+..+++|.+.|++++|++ ++++|+||+.|++|++|
T Consensus 9 ~~~H~~~V~~v~~s~~g~--~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGT--RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -----CCEEEEEECGGGC--EEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred cccccCeEEEeeEcCCCC--EEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 346888899999998654 56777889999999998764 4678999999999999986 37899999999999999
Q ss_pred ecCCCCceeEE---EecCCcceEEECCC--CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC---
Q psy16316 135 DLRSPNCQGIM---HVSGSRPIAAFDPE--GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD--- 206 (335)
Q Consensus 135 d~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--- 206 (335)
|++++...... .+...+..++|+|+ +.++++|+.|++|++||++... ..........+...+.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG--QWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS--CEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC--CcceeeeeccccCCcceEEEccccCC
Confidence 99887533222 23445677899997 7899999999999999997532 11111222344556778999997
Q ss_pred --------------CCEEEEEeCCCeEEEEECCCC---eeeeeecccccCCCCceEEEEcCCC----cEEEEEeCCCcEE
Q psy16316 207 --------------GKYILISTNGSIIRTFDAYNG---QCLQTLAGFLNNKGCPLEASFTPDS----KYVISGSTDGRIH 265 (335)
Q Consensus 207 --------------~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~~~~v~~~~~sp~~----~~l~tgs~dg~v~ 265 (335)
+.+|++++.|+.|++||++.. ++...+. .|...|.+++|+|++ ++||+|+.|++|+
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~---~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~ 241 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE---AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF 241 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB---CCSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc---cCCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence 468999999999999999765 3444444 456678999999986 8999999999999
Q ss_pred EEECCCC---e-eEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 266 IWNAEKG---F-KVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 266 iwd~~~~---~-~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
+|++.+. . ....+ ..|.++|++++|+|++++||+++ +.+++|..+
T Consensus 242 iw~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 242 IWTCDDASSNTWSPKLL-HKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEECSSTTCCCCBCCEE-EECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEccCccccchhhhhh-hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9998752 1 11223 34889999999999999999886 569999764
No 87
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.3e-33 Score=254.71 Aligned_cols=249 Identities=16% Similarity=0.250 Sum_probs=202.7
Q ss_pred cceeee--ccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 12 KVAKLF--RENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 12 ~~~~~~--~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
++.+.+ .+|.+.|++|+|+|+|++||+|+.||+|+|||+++++.+..+.+|...+..+.+.. .++++++.|+.+
T Consensus 136 ~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~----~~l~sgs~d~~i 211 (420)
T 4gga_A 136 DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS----YILSSGSRSGHI 211 (420)
T ss_dssp CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET----TEEEEEETTSEE
T ss_pred CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCC----CEEEEEeCCCce
Confidence 444544 47889999999999999999999999999999999999999888888888777643 366778889999
Q ss_pred EEEEcCC-CceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCcee-----EEEecCCcceEEECCCC-CE
Q psy16316 90 RYLSLHD-NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG-----IMHVSGSRPIAAFDPEG-LI 162 (335)
Q Consensus 90 ~~~~~~~-~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~ 162 (335)
++||... ...+..+.+|...+..+.++|+++.+++++.|+.+++||..+++... ...+...+..++++|.+ .+
T Consensus 212 ~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~ 291 (420)
T 4gga_A 212 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV 291 (420)
T ss_dssp EEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTE
T ss_pred eEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccE
Confidence 9999976 45667899999999999999999999999999999999998765321 11233445567788854 56
Q ss_pred EEEE--EcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe--CCCeEEEEECCCCeeeeeeccccc
Q psy16316 163 FGVG--VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST--NGSIIRTFDAYNGQCLQTLAGFLN 238 (335)
Q Consensus 163 ~~~~--~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~~~~i~i~d~~~~~~~~~~~~~~~ 238 (335)
++++ +.|++|++||+++.. ....+ .....+..+.|+|+++.+++++ .|+.|++||..+++++.++.+|
T Consensus 292 la~~~gs~D~~I~iwd~~t~~--~~~~~----~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH-- 363 (420)
T 4gga_A 292 LATGGGTSDRHIRIWNVCSGA--CLSAV----DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH-- 363 (420)
T ss_dssp EEEEECTTTCEEEEEETTTTE--EEEEE----ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--
T ss_pred EEEEeecCCCEEEEEeCCccc--cceee----ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC--
Confidence 6554 478999999998632 12211 2234567899999999998876 6899999999999999988764
Q ss_pred CCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCe
Q psy16316 239 NKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGF 273 (335)
Q Consensus 239 ~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~ 273 (335)
...|.+++|+|||++|||||.|++|+|||+.+..
T Consensus 364 -~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 364 -TSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp -SSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred -CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 5678999999999999999999999999987543
No 88
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-34 Score=281.35 Aligned_cols=258 Identities=17% Similarity=0.181 Sum_probs=208.0
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEcc--CCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCE--LGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
..++++|.+.|++++|+|+|++|++|+.||+|+|||+. ++.....+.+|...|..++|+++.....+++++.|+.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 45788999999999999999999999999999999998 4455667778889999999998855667778888999999
Q ss_pred EEcCCCc--eEeeecCCCCCeEEEEECCC--CCEEEEeeCCCcEEEeecCCCCceeEE---EecCCcceEEECC------
Q psy16316 92 LSLHDNK--YIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKTVRLWDLRSPNCQGIM---HVSGSRPIAAFDP------ 158 (335)
Q Consensus 92 ~~~~~~~--~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~i~vWd~~~~~~~~~~---~~~~~~~~~~~~~------ 158 (335)
||+.+++ .+..+.+|...|.+++|+|+ ++.+++|+.||+|++||++++...... .+...+..+.++|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999886 77888999999999999999 999999999999999999887433222 3344566778888
Q ss_pred -------CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC---CCEEEEEeCCCeEEEEECCCCe
Q psy16316 159 -------EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD---GKYILISTNGSIIRTFDAYNGQ 228 (335)
Q Consensus 159 -------~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~~~~~i~i~d~~~~~ 228 (335)
++.++++|+.|++|++||++.... ..........+...+.+++|+|+ +.++++++.|+.|++||+.+++
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcc-cceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 589999999999999999986432 11222233455677899999999 8999999999999999998864
Q ss_pred e--eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 229 C--LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 229 ~--~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
. ...+.....+...+.+++|+|++++|++|+.||.|++|++..+
T Consensus 241 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 2 1222233345667889999999999999999999999998753
No 89
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7e-33 Score=244.34 Aligned_cols=253 Identities=17% Similarity=0.264 Sum_probs=202.3
Q ss_pred ceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
+.+.+++|.+.|.++.|+|+|++|++|+.|+.|++|+............+...+....+.+... .+++++.|+.+++|
T Consensus 78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~ 155 (340)
T 4aow_A 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLW 155 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS--CEEEEETTSCEEEE
T ss_pred eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCc--cceeecCCCeEEEE
Confidence 4567899999999999999999999999999999999998887776666666677777766554 34566689999999
Q ss_pred EcCCCce-EeeecCCCCCeEEEEECCCC--CEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEc
Q psy16316 93 SLHDNKY-IRYFPGHTKKVNSLCLSPID--DTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVN 168 (335)
Q Consensus 93 ~~~~~~~-~~~~~~H~~~V~~~~~~~~~--~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 168 (335)
|+..... ...+.+|...|..++|++++ ..+++++.|++|++||++++++...+. +...+..++|+|+++++++|+.
T Consensus 156 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~ 235 (340)
T 4aow_A 156 NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK 235 (340)
T ss_dssp CTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC
Confidence 9976544 45577899999999998864 578999999999999999887665542 3445667889999999999999
Q ss_pred CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc------ccCCCC
Q psy16316 169 SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF------LNNKGC 242 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~------~~~~~~ 242 (335)
|++|++||++... +...+ .....+..+.|+|++.+++ ++.|+.|++||++++..+..+... ..+...
T Consensus 236 Dg~i~iwd~~~~~--~~~~~----~~~~~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~ 308 (340)
T 4aow_A 236 DGQAMLWDLNEGK--HLYTL----DGGDIINALCFSPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ 308 (340)
T ss_dssp TCEEEEEETTTTE--EEEEE----ECSSCEEEEEECSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCC
T ss_pred CCeEEEEEeccCc--eeeee----cCCceEEeeecCCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC
Confidence 9999999998632 22222 1234578899999887655 556899999999998877666432 235567
Q ss_pred ceEEEEcCCCcEEEEEeCCCcEEEEECCCCee
Q psy16316 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFK 274 (335)
Q Consensus 243 v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~ 274 (335)
|.+++|+|++++|++|+.||.|+|||+.+|.+
T Consensus 309 v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGtr 340 (340)
T 4aow_A 309 CTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEEEC---
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeCCCcCC
Confidence 88999999999999999999999999988764
No 90
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.1e-33 Score=273.15 Aligned_cols=290 Identities=15% Similarity=0.173 Sum_probs=235.7
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
..+..+.+.+|.++|+++.|+|+|++||+|+.||+|++||+.+++....+..|...+..++|++++.. +++++.|+.+
T Consensus 44 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg~i 121 (814)
T 3mkq_A 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY--VLSGSDDLTV 121 (814)
T ss_dssp TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSE--EEEEETTSEE
T ss_pred CCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCE--EEEEcCCCEE
Confidence 34566788999999999999999999999999999999999999998888889999999999987664 4566679999
Q ss_pred EEEEcCCC-ceEeeecCCCCCeEEEEECC-CCCEEEEeeCCCcEEEeecCCCCceeEEEec--CCcceEEECC--CCCEE
Q psy16316 90 RYLSLHDN-KYIRYFPGHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRSPNCQGIMHVS--GSRPIAAFDP--EGLIF 163 (335)
Q Consensus 90 ~~~~~~~~-~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~ 163 (335)
++||+.++ .....+.+|...|.+++|+| +++.|++++.|++|++||+.++......... .....+.++| ++.++
T Consensus 122 ~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 201 (814)
T 3mkq_A 122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM 201 (814)
T ss_dssp EEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEE
T ss_pred EEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEE
Confidence 99999987 77788999999999999999 7889999999999999999887766554332 4566788998 99999
Q ss_pred EEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCc
Q psy16316 164 GVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCP 243 (335)
Q Consensus 164 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v 243 (335)
++++.++.|++||++... ... ....+...+.+++|+|+++++++++.|+.|++||+.+++....+.. +...+
T Consensus 202 ~~~~~dg~i~~~d~~~~~--~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~---~~~~v 273 (814)
T 3mkq_A 202 ITASDDLTIKIWDYQTKS--CVA---TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV---GLERS 273 (814)
T ss_dssp EEECTTSEEEEEETTTTE--EEE---EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECC---SSSSE
T ss_pred EEEeCCCEEEEEECCCCc--EEE---EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec---CCCcE
Confidence 999999999999997532 222 2233455688999999999999999999999999999988877755 34567
Q ss_pred eEEEEcCCCc--EEEEEeCCCcEEEEECCCCeeEEEe------------------------------------------C
Q psy16316 244 LEASFTPDSK--YVISGSTDGRIHIWNAEKGFKVCVL------------------------------------------D 279 (335)
Q Consensus 244 ~~~~~sp~~~--~l~tgs~dg~v~iwd~~~~~~~~~~------------------------------------------~ 279 (335)
.+++|+|+++ ++++++ |+.+.+|+.........+ .
T Consensus 274 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (814)
T 3mkq_A 274 WCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKEL 352 (814)
T ss_dssp EEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEE
T ss_pred EEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecC
Confidence 8999999987 466665 566888886542111100 0
Q ss_pred CCCCCCeEEEEeCCCCcEEEeee-ceeEEecc
Q psy16316 280 ADHPSPVQTIQFNPKFNMMASAC-TNLAFWIP 310 (335)
Q Consensus 280 ~~h~~~v~~v~~sp~~~~~~s~~-~~~~~w~~ 310 (335)
..|...+.+++|+|+|.++++++ +.+.+|..
T Consensus 353 ~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~ 384 (814)
T 3mkq_A 353 GSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTA 384 (814)
T ss_dssp CCCSSCCSEEEECTTSSEEEEEETTEEEEEET
T ss_pred CCCccCCceeEECCCCCEEEEecCCEEEEEEC
Confidence 22455688999999999888775 56888875
No 91
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.2e-34 Score=255.42 Aligned_cols=251 Identities=14% Similarity=0.129 Sum_probs=193.1
Q ss_pred eeccCCccEEEEEECCC---------CCEEEEecCCCeEEEEEccCCcceeeee---------cccccceEEEEecCCCe
Q psy16316 16 LFRENTDKITSIDYSAD---------GLLLISCSEDDQIVIYDCELGTNKRTVF---------SKKYGVDLIRFTHAKQA 77 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~---------g~~lasgs~Dg~i~lwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 77 (335)
.|.+|.+.|.+++++++ +..|++|+.|+++|+|+++......... .+...+..++|+|++..
T Consensus 68 ~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~ 147 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTV 147 (365)
T ss_dssp ECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSC
T ss_pred EccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCE
Confidence 46789999999876543 2233445678999999987765432211 11233678999999998
Q ss_pred eEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE---ecCCcceE
Q psy16316 78 AIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH---VSGSRPIA 154 (335)
Q Consensus 78 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~---~~~~~~~~ 154 (335)
.++++++.|++|++||+.+++.+..++ |...|.+++|+|++++|++++.| .+++|+..++....... +......+
T Consensus 148 la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v 225 (365)
T 4h5i_A 148 AAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKI 225 (365)
T ss_dssp EEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEE
T ss_pred EEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEE
Confidence 888899999999999999999988886 77889999999999999999855 56667666666543321 12234567
Q ss_pred EECCCCCEEEEEEcCC----eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeee
Q psy16316 155 AFDPEGLIFGVGVNSD----TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL 230 (335)
Q Consensus 155 ~~~~~~~~~~~~~~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~ 230 (335)
+|+|++.++++++.++ ++++||+...... .........+...+.+++|+|+|++|++++.|+.|++||+++++++
T Consensus 226 ~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~ 304 (365)
T 4h5i_A 226 NFIADDTVLIAASLKKGKGIVLTKISIKSGNTS-VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMS 304 (365)
T ss_dssp EEEETTEEEEEEEESSSCCEEEEEEEEETTEEE-EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred EEcCCCCEEEEEecCCcceeEEeecccccceec-ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEE
Confidence 8999999999998877 6888988653211 1112223345567899999999999999999999999999999988
Q ss_pred eee-cccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 231 QTL-AGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 231 ~~~-~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
..+ .+ |...|.+++|+|||++|||||.|++|+||++...
T Consensus 305 ~~~~~g---H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 305 KIFKQA---HSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEETTS---SSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEecCc---ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 775 34 5567899999999999999999999999998654
No 92
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.8e-33 Score=250.18 Aligned_cols=244 Identities=21% Similarity=0.242 Sum_probs=191.9
Q ss_pred ccCCccEEEEEECC-CCCEEEEecCCCeEEEEEccCCcceeeeecc---cccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 18 RENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCELGTNKRTVFSK---KYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 18 ~~h~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
.+|.+.|.++.|+| ++.+|++|+.|++|++||++. .....+..+ ...+..++|+++.. .+++++.|+.|++||
T Consensus 115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d 191 (383)
T 3ei3_B 115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLG 191 (383)
T ss_dssp CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEE
T ss_pred CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEE
Confidence 37999999999999 789999999999999999985 444444433 36689999998765 456667899999999
Q ss_pred cCCCceEeeecCCCCCeEEEEECCCCC-EEEEeeCCCcEEEeecCC----CCceeEEEecCCcceEEECC-CCCEEEEEE
Q psy16316 94 LHDNKYIRYFPGHTKKVNSLCLSPIDD-TFISGSYDKTVRLWDLRS----PNCQGIMHVSGSRPIAAFDP-EGLIFGVGV 167 (335)
Q Consensus 94 ~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 167 (335)
+ +++.+..+.+|...|.+++|+|+++ +|++|+.|++|++||+++ +.+.....+...+..+.|+| ++.++++++
T Consensus 192 ~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~ 270 (383)
T 3ei3_B 192 L-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTD 270 (383)
T ss_dssp T-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEE
T ss_pred C-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEc
Confidence 9 5778889999999999999999998 999999999999999987 44555555566677889999 999999999
Q ss_pred cCCeEEEEEccCCCCCceeeEEecc----CCCc----------cceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeee
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAA----EKEC----------DWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL 233 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~----~~~~----------~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 233 (335)
.|+.|++||++...... .+.... .+.. .+..++|+|++++ +++.|+.|++||+.+++++..+
T Consensus 271 ~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l 346 (383)
T 3ei3_B 271 QRNEIRVYSSYDWSKPD--QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQL 346 (383)
T ss_dssp SSSEEEEEETTBTTSCS--EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEE
T ss_pred CCCcEEEEECCCCcccc--ccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeee
Confidence 99999999998754321 111110 1111 1223455555555 5568999999999999998888
Q ss_pred cccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCC
Q psy16316 234 AGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 234 ~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~ 271 (335)
.++. +...+..++|+|++++|++|+ |+.|++||+++
T Consensus 347 ~~~~-~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 347 RDPN-AAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CBTT-BCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred cCCC-CCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 7543 234455679999999999997 99999999864
No 93
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=239.47 Aligned_cols=248 Identities=17% Similarity=0.266 Sum_probs=197.5
Q ss_pred ccceeee--ccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCe
Q psy16316 11 YKVAKLF--RENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDT 88 (335)
Q Consensus 11 ~~~~~~~--~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 88 (335)
.++.+.+ .+|.+.|++++|+|+|++||||+.||+|++||+++++....+.+|...+....+.. .++++++.++.
T Consensus 55 g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~----~~l~s~~~~~~ 130 (318)
T 4ggc_A 55 GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS----YILSSGSRSGH 130 (318)
T ss_dssp CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEET----TEEEEEETTSE
T ss_pred CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCC----CEEEEEecCCc
Confidence 3444555 57899999999999999999999999999999999999888888877766655433 25667778999
Q ss_pred EEEEEcCCC-ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeE--E---EecCCcceEEECCCC-C
Q psy16316 89 VRYLSLHDN-KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGI--M---HVSGSRPIAAFDPEG-L 161 (335)
Q Consensus 89 i~~~~~~~~-~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~--~---~~~~~~~~~~~~~~~-~ 161 (335)
+++|+.... ..+..+.+|...+..+.+.++++.|++++.|++|++||+++++.... . ...+.+....+.|.+ .
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 210 (318)
T 4ggc_A 131 IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN 210 (318)
T ss_dssp EEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTT
T ss_pred eEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCc
Confidence 999998765 56678899999999999999999999999999999999987654321 1 223334456667654 3
Q ss_pred EE--EEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe--CCCeEEEEECCCCeeeeeecccc
Q psy16316 162 IF--GVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST--NGSIIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 162 ~~--~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~~~~i~i~d~~~~~~~~~~~~~~ 237 (335)
++ ++++.+++|++||.+.... .. .......+..+.|+|++..+++++ .|+.|++||+++++++.++.+|
T Consensus 211 ~~~~~~~~~~~~i~lwd~~~~~~--~~----~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH- 283 (318)
T 4ggc_A 211 VLATGGGTSDRHIRIWNVCSGAC--LS----AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH- 283 (318)
T ss_dssp EEEEEECTTTCEEEEEETTTCCE--EE----EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-
T ss_pred EEEEEecCCCCEEEEEecccccc--cc----cccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC-
Confidence 33 4566789999999876321 11 122344567899999999988765 6899999999999999988764
Q ss_pred cCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCC
Q psy16316 238 NNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 238 ~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~ 271 (335)
...|.+++|+|++++|||||.||+|+|||+.+
T Consensus 284 --~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 284 --TSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp --SSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred --CCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 56789999999999999999999999999864
No 94
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=263.71 Aligned_cols=248 Identities=10% Similarity=0.017 Sum_probs=193.3
Q ss_pred eeeccCCccEEEEEECCC------CCEEEEecCCCeEEEEEccCCcce-----------eeeecccccceEEEEecCCCe
Q psy16316 15 KLFRENTDKITSIDYSAD------GLLLISCSEDDQIVIYDCELGTNK-----------RTVFSKKYGVDLIRFTHAKQA 77 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~------g~~lasgs~Dg~i~lwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 77 (335)
.++.+|.+.|.+++|+|+ +.+|||||.||+|+|||+..+... ..+.+|...+.+++|.++.
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-- 278 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-- 278 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS--
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC--
Confidence 456789999999999997 579999999999999999876432 2455677889999998642
Q ss_pred eEEeecCCCCeEEEEEcCCC-ceEeeecCCCCCeEEE--EECCCC-CEEEEeeCCCcEEEeecCCCCceeEEE--ec-CC
Q psy16316 78 AIHASTKIDDTVRYLSLHDN-KYIRYFPGHTKKVNSL--CLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMH--VS-GS 150 (335)
Q Consensus 78 ~~~~~~~~d~~i~~~~~~~~-~~~~~~~~H~~~V~~~--~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~--~~-~~ 150 (335)
.+++++.|++|++||+.++ .+...+.+|...|+++ .|+|++ .+|+|||.|++|++||++++++...+. .. ..
T Consensus 279 -~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~ 357 (524)
T 2j04_B 279 -TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSN 357 (524)
T ss_dssp -EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCS
T ss_pred -eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCc
Confidence 5778889999999999876 4456789999999999 567887 899999999999999999877655442 22 12
Q ss_pred cceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCC---
Q psy16316 151 RPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG--- 227 (335)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~--- 227 (335)
+..++|+|++..+++++.|++|++||++.... ...+ ..+...+.+++|+|++++|++++.|++|++||+...
T Consensus 358 v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~--~~~l---~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~ 432 (524)
T 2j04_B 358 LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA--VHPL---VSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLH 432 (524)
T ss_dssp CCCEEEETTTTEEEEECSSSEEEEEETTCTTC--CEEE---EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTT
T ss_pred ccceEeCCCcCeEEEeCCCCcEEEEECccccc--ceee---ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhcc
Confidence 45688999999999999999999999986432 1222 235667899999999999999999999999985321
Q ss_pred --e---------eeeee---------------------------cccccCCCCceEEEEcCCCc---EEEEEeCCCcEEE
Q psy16316 228 --Q---------CLQTL---------------------------AGFLNNKGCPLEASFTPDSK---YVISGSTDGRIHI 266 (335)
Q Consensus 228 --~---------~~~~~---------------------------~~~~~~~~~v~~~~~sp~~~---~l~tgs~dg~v~i 266 (335)
+ .+..+ ....++...|.+++|+|+++ .+|+|+.||.|+|
T Consensus 433 ~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrl 512 (524)
T 2j04_B 433 GIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTL 512 (524)
T ss_dssp CC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEE
T ss_pred ccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEE
Confidence 0 00000 01112445677899999964 9999999999999
Q ss_pred EECC
Q psy16316 267 WNAE 270 (335)
Q Consensus 267 wd~~ 270 (335)
|++.
T Consensus 513 w~l~ 516 (524)
T 2j04_B 513 EYLS 516 (524)
T ss_dssp EECS
T ss_pred EEcc
Confidence 9975
No 95
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-32 Score=250.29 Aligned_cols=283 Identities=12% Similarity=0.016 Sum_probs=218.9
Q ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEccCCc---ceeeeecc------------------------------------
Q psy16316 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGT---NKRTVFSK------------------------------------ 62 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~---~~~~~~~~------------------------------------ 62 (335)
.+++++.|+|+|++|+++ .++.|++||+++++ .+..+..+
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578899999999976665 57899999999988 44443321
Q ss_pred ------------------cccceEEEEecCCCeeEEeecCCCCeEEEEEcC--CCceEeeec--CCCCCeEEEEECCCCC
Q psy16316 63 ------------------KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH--DNKYIRYFP--GHTKKVNSLCLSPIDD 120 (335)
Q Consensus 63 ------------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~--~~~~~~~~~--~H~~~V~~~~~~~~~~ 120 (335)
...+..++|++++.. ++++++.|+.|++||+. +++.++.+. +|...|.+++|+|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESR-LIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSE-EEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCE-EEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 125788899887654 34566679999999999 888888876 5678999999999999
Q ss_pred EEEEeeCCCcEEEeecCCCCcee-----EEEecCCcceEEECCC---CCEEEEEEcCCeEEEEEccCCCCCceeeEEecc
Q psy16316 121 TFISGSYDKTVRLWDLRSPNCQG-----IMHVSGSRPIAAFDPE---GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA 192 (335)
Q Consensus 121 ~l~s~s~D~~i~vWd~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~ 192 (335)
+|++|+.|+.|++||+.++.... ...+...+..+.|+|+ +.++++|+.|++|++||++... ... ....
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~--~~~~ 238 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF--IVD--KWLF 238 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT--CEE--EECC
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc--eee--eeec
Confidence 99999999999999998766442 2334455677899999 9999999999999999997632 121 1233
Q ss_pred CCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc----------------------cCCCCceEEEEcC
Q psy16316 193 EKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL----------------------NNKGCPLEASFTP 250 (335)
Q Consensus 193 ~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~----------------------~~~~~v~~~~~sp 250 (335)
.+...+.+++|+ ++.+|++++.|+.|++||+.+++++..+..+. .....+..++|+|
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 456678999999 99999999999999999999999887775321 1234577899999
Q ss_pred CCcEEEEEe-CCCcEEEEEC--CCC---eeEEEeCCCCCCCeEEEEeCCCCcEEEeeec--------eeEEeccccc
Q psy16316 251 DSKYVISGS-TDGRIHIWNA--EKG---FKVCVLDADHPSPVQTIQFNPKFNMMASACT--------NLAFWIPTYL 313 (335)
Q Consensus 251 ~~~~l~tgs-~dg~v~iwd~--~~~---~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~--------~~~~w~~~~~ 313 (335)
++++|++++ .|+.|++|++ .++ .....+. .| +.|.+++|+|++.+++.++. .+.+|..+..
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~-~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT-FP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE-CS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCceeeccEec-cC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 999999999 8999999999 554 4444554 35 79999999996444443331 2688876544
No 96
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=258.19 Aligned_cols=265 Identities=11% Similarity=0.101 Sum_probs=202.1
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK 98 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 98 (335)
+-...|.+|+|+|||+++||+|.|++|+ |.+.++.. .+|...+..++|+|++ .++++.+|+. +
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg---------~~~~~~~~~~---~ 75 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE---------FENKLDFELA---Q 75 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC---------CCCTTTTSCC---C
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC---------CcceEEEEeC---C
Confidence 4567899999999999999999999999 86666544 5788899999999875 2455555543 3
Q ss_pred eEeeec-CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC-----CcceEEECCCCCEEEEEEcCCeE
Q psy16316 99 YIRYFP-GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG-----SRPIAAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 99 ~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~v 172 (335)
....+. +|...|.+++|+|+|.+|++++.||+|++||... +...+.+.. ....++|+|+|+++++|+.||+|
T Consensus 76 ~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 76 QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 222333 5688999999999999999999999999999543 222222111 35678999999999999999999
Q ss_pred EEEEccCCCCC-c----eeeEEe-ccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeee---eeecccccCCCCc
Q psy16316 173 KLYDVRSFDKG-P----FSNFKF-AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL---QTLAGFLNNKGCP 243 (335)
Q Consensus 173 ~iwd~~~~~~~-~----~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~---~~~~~~~~~~~~v 243 (335)
++||+...... + ...+.. ..++...+.+++|+|+| +++++.|+.|++||+..++.. +++.. .+...|
T Consensus 154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~--~h~~~V 229 (588)
T 2j04_A 154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN--ASRRKI 229 (588)
T ss_dssp EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC--CCSSCC
T ss_pred EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc--cccCcE
Confidence 99999863210 1 122211 13455678999999999 788889999999999887632 34421 244568
Q ss_pred eEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEe--CCCCcEEEeee--ceeEEeccc
Q psy16316 244 LEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQF--NPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 244 ~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~--sp~~~~~~s~~--~~~~~w~~~ 311 (335)
.+++|+ ++.||+++ +++|++||...+...... .+|.+.|.+++| +|++..+++++ +. ++|..+
T Consensus 230 ~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~-~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 230 TDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK-TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE-CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE-cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 889999 68999998 699999999877664433 369999999999 99999999886 45 688754
No 97
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-33 Score=250.60 Aligned_cols=250 Identities=12% Similarity=0.136 Sum_probs=208.3
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeeccccc---------------ceEEEEecCC
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG---------------VDLIRFTHAK 75 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ 75 (335)
.+....+.+|.+.|.++.|+|++++|++++.|+.|++||+.+++....+..+... +..+.|.++.
T Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (425)
T 1r5m_A 139 GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD 218 (425)
T ss_dssp SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT
T ss_pred CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC
Confidence 4566788999999999999999999999999999999999999887776665555 7788888763
Q ss_pred CeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceE
Q psy16316 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIA 154 (335)
Q Consensus 76 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~ 154 (335)
. +++++.|+.+++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++....+. +...+..+
T Consensus 219 ~---~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~ 295 (425)
T 1r5m_A 219 K---FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSA 295 (425)
T ss_dssp E---EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEE
T ss_pred E---EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEE
Confidence 2 4556679999999999999999999999999999999999999999999999999999887766553 44556678
Q ss_pred EECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCe------
Q psy16316 155 AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQ------ 228 (335)
Q Consensus 155 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~------ 228 (335)
.++|++ ++++++.|+.|++||++... .. .....+...+.+++|+|++++|++++.++.|++||+.+++
T Consensus 296 ~~~~~~-~l~~~~~d~~i~i~d~~~~~--~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 369 (425)
T 1r5m_A 296 SWVGDD-KVISCSMDGSVRLWSLKQNT--LL---ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSL 369 (425)
T ss_dssp EEETTT-EEEEEETTSEEEEEETTTTE--EE---EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----
T ss_pred EECCCC-EEEEEeCCCcEEEEECCCCc--Ee---EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeee
Confidence 899999 99999999999999997632 12 2222345577899999999999999999999999998877
Q ss_pred --------------eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 229 --------------CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 229 --------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
.+..+..+.. ...+.+++|+|++++|++|+.||.|++|++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 370 YGNRDGILNPLPIPLYASYQSSQD-NDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ---------CEECCEEEEECCTTC-CCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ecccccccCcccchhhhhhcCccc-CCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 6666654321 1168899999999999999999999999974
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.5e-33 Score=252.92 Aligned_cols=255 Identities=17% Similarity=0.211 Sum_probs=208.6
Q ss_pred ceeeeccCCccEEEEEECC-CCCEEEEecCCCeEEEEEccCC-------cceeeeecccccceEEEEecCCCeeEEeecC
Q psy16316 13 VAKLFRENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCELG-------TNKRTVFSKKYGVDLIRFTHAKQAAIHASTK 84 (335)
Q Consensus 13 ~~~~~~~h~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (335)
....+.+|.+.|++++|+| ++.+||+|+.||+|+|||+.++ +....+.+|...+..++|.+++. .++++++
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~s~~ 151 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-NVLLSAG 151 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBT-TEEEEEE
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCC-CEEEEEc
Confidence 4456889999999999999 9999999999999999999987 55667778889999999998753 2455667
Q ss_pred CCCeEEEEEcCCCceEeee--cCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE--ecCC-cceEEECCC
Q psy16316 85 IDDTVRYLSLHDNKYIRYF--PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH--VSGS-RPIAAFDPE 159 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~~~~~--~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~--~~~~-~~~~~~~~~ 159 (335)
.|+.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+++++....+. +.+. ...+.|+|+
T Consensus 152 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (402)
T 2aq5_A 152 CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE 231 (402)
T ss_dssp TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST
T ss_pred CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC
Confidence 8999999999999999999 8999999999999999999999999999999999887766552 2222 456789999
Q ss_pred CCEEEEE---EcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEE-EeCCCeEEEEECCCCee-eeeec
Q psy16316 160 GLIFGVG---VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILI-STNGSIIRTFDAYNGQC-LQTLA 234 (335)
Q Consensus 160 ~~~~~~~---~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~~~~i~i~d~~~~~~-~~~~~ 234 (335)
+.++++| +.++.|++||++.... +.... ...+...+..++|+|+++++++ ++.|+.|++||+.+++. +..+.
T Consensus 232 ~~~l~~g~~~~~d~~i~iwd~~~~~~-~~~~~--~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 232 GKILTTGFSRMSERQVALWDTKHLEE-PLSLQ--ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS 308 (402)
T ss_dssp TEEEEEEECTTCCEEEEEEETTBCSS-CSEEE--ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE
T ss_pred CcEEEEeccCCCCceEEEEcCccccC-CceEE--eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec
Confidence 9999999 7899999999987432 12222 1233445788999999999975 45799999999998874 55555
Q ss_pred ccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCee
Q psy16316 235 GFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK 274 (335)
Q Consensus 235 ~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~ 274 (335)
.+. +...+.+++|+|++.++++ .++.+++|++.++..
T Consensus 309 ~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 309 MFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred ccc-cCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 544 4567889999999998875 466999999987654
No 99
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-32 Score=239.17 Aligned_cols=251 Identities=16% Similarity=0.185 Sum_probs=208.2
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCC---
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKID--- 86 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--- 86 (335)
..+..+.+.+|.+.|.++.|+|++++|++++.||+|++||+.+++....+. +...+..++|.+++...+. +..+
T Consensus 63 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~--~~~~~~~ 139 (369)
T 3zwl_B 63 NGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLA--ILDNVMK 139 (369)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEE--EECCBTT
T ss_pred CchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEE--ecCCccC
Confidence 345677899999999999999999999999999999999999998877765 6778999999987665443 3345
Q ss_pred --CeEEEEEcCCCc-----------eEeeecCCCC--CeEEEEECCCCCEEEEeeCCCcEEEeecCC-CCceeEEE-ecC
Q psy16316 87 --DTVRYLSLHDNK-----------YIRYFPGHTK--KVNSLCLSPIDDTFISGSYDKTVRLWDLRS-PNCQGIMH-VSG 149 (335)
Q Consensus 87 --~~i~~~~~~~~~-----------~~~~~~~H~~--~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~-~~~~~~~~-~~~ 149 (335)
+.+++||+.... .+..+.+|.. .+.+++|+|+++.|++++.|+.|++||+++ ......+. +..
T Consensus 140 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 219 (369)
T 3zwl_B 140 NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK 219 (369)
T ss_dssp BCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSS
T ss_pred CCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCC
Confidence 999999997653 3445566766 999999999999999999999999999998 44444443 345
Q ss_pred CcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCC------------
Q psy16316 150 SRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS------------ 217 (335)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~------------ 217 (335)
.+..+.|+|++.++++++.|+.|++||++... ....+. ....+..++|+|++.++++++.++
T Consensus 220 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 293 (369)
T 3zwl_B 220 SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ--VLKKYE----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEG 293 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEE----CSSCEEEEEECSSSSEEEEEECCC------------
T ss_pred ceeEEEECCCCCEEEEecCCceEEEEECCCCc--eeeeec----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCC
Confidence 56678999999999999999999999998632 222222 345678899999999999999887
Q ss_pred --eEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 218 --IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 218 --~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
.+++||..+++.+..+.+ +...+.+++|+|++++|++|+.||.|++|++.++
T Consensus 294 ~~~i~~~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 294 KFEARFYHKIFEEEIGRVQG---HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp -CEEEEEETTTCCEEEEEEC---CSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred cceeEEEecCCCcchhheec---ccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 899999999988887765 4566889999999999999999999999998754
No 100
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.4e-33 Score=258.41 Aligned_cols=251 Identities=17% Similarity=0.187 Sum_probs=185.5
Q ss_pred eeeccCCccEEEEEECC-CCCEEEEecCCCeEEEEEccCCcceeeeecc--cccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 15 KLFRENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCELGTNKRTVFSK--KYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
..+.+|.+.|++|.|+| ++.+|+|||.||+|++||++++........+ ...+..++|++++. ++++++.|+.|++
T Consensus 158 ~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~ 235 (435)
T 4e54_B 158 IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVIL 235 (435)
T ss_dssp ECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEE
T ss_pred EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEee
Confidence 34679999999999998 6899999999999999999876443222222 23456788887654 5667778999999
Q ss_pred EEcCCCceEeeecCCCCCeEEEEECCCCC-EEEEeeCCCcEEEeecCCCCceeEE----EecCCcceEEECCCCCEEEEE
Q psy16316 92 LSLHDNKYIRYFPGHTKKVNSLCLSPIDD-TFISGSYDKTVRLWDLRSPNCQGIM----HVSGSRPIAAFDPEGLIFGVG 166 (335)
Q Consensus 92 ~~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 166 (335)
||+.. +.+..+.+|...|++++|+|+++ +|++|+.|++|++||+++.+....+ .+...+..++|+|++.+++++
T Consensus 236 wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~ 314 (435)
T 4e54_B 236 LNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 314 (435)
T ss_dssp EESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE
T ss_pred eccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEE
Confidence 99864 56778899999999999999875 7889999999999999876644322 233445667899999999999
Q ss_pred EcCCeEEEEEccCCCCCceeeEEecc---CCCccceEEEEccCCCEEEEEe------------CCCeEEEEECCCCeeee
Q psy16316 167 VNSDTIKLYDVRSFDKGPFSNFKFAA---EKECDWTGIKFSADGKYILIST------------NGSIIRTFDAYNGQCLQ 231 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~~~------------~~~~i~i~d~~~~~~~~ 231 (335)
+.|++|++||++.... ...+.... ..........|+|++.+++++. .++.|++||..+++.+.
T Consensus 315 ~~D~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~ 392 (435)
T 4e54_B 315 DQKSEIRVYSASQWDC--PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC 392 (435)
T ss_dssp ESSSCEEEEESSSSSS--EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEE
T ss_pred cCCCEEEEEECCCCcc--ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEE
Confidence 9999999999986432 11111100 0111122356777777776654 34679999999999887
Q ss_pred eecccccCCCCceEE-EEcCCCcEEEEEeCCCcEEEEECCCCe
Q psy16316 232 TLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHIWNAEKGF 273 (335)
Q Consensus 232 ~~~~~~~~~~~v~~~-~~sp~~~~l~tgs~dg~v~iwd~~~~~ 273 (335)
.+... +...+.++ +|+|+|++||+|+ |++|+|||+.++.
T Consensus 393 ~l~~~--~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 393 QLYDP--ESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp EECCS--SCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred EEeCC--CCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 76432 34455665 6999999999987 7899999998764
No 101
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.6e-32 Score=244.67 Aligned_cols=285 Identities=17% Similarity=0.202 Sum_probs=194.1
Q ss_pred cCCccEEEEEECC-CCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCC-CeeEEeecCCCCeEEEEEcCC
Q psy16316 19 ENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAK-QAAIHASTKIDDTVRYLSLHD 96 (335)
Q Consensus 19 ~h~~~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~ 96 (335)
+|.+.|.++.|+| ++.+|++|+.||+|++||+.+++....+. +...+..+.+.+.. ...++++++.|+.+++||+.+
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 6999999999999 77899999999999999999887766554 56667788887754 344667777899999999999
Q ss_pred CceEeeecCCCCCeEEEEECCCCC-EEEEeeCCCcEEEeecCCCCc-eeEE----------------EecCCcceEEECC
Q psy16316 97 NKYIRYFPGHTKKVNSLCLSPIDD-TFISGSYDKTVRLWDLRSPNC-QGIM----------------HVSGSRPIAAFDP 158 (335)
Q Consensus 97 ~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~-~~~~----------------~~~~~~~~~~~~~ 158 (335)
++.+..+.+|...|.+++|+|+++ +|++|+.|+.|++||+++... ...+ .+...+..+.|+|
T Consensus 176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 999999999999999999999988 599999999999999987642 1111 1233455678999
Q ss_pred CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccccc
Q psy16316 159 EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN 238 (335)
Q Consensus 159 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 238 (335)
++.++++++.|+.+++||+++...........................+..++.++.++.|++||+.+++.+..+.+
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--- 332 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG--- 332 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC---
T ss_pred CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc---
Confidence 99999999999999999998643211110000000111111122233345566677889999999999998888765
Q ss_pred CCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEE-Eee--eceeEEeccc
Q psy16316 239 NKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMM-ASA--CTNLAFWIPT 311 (335)
Q Consensus 239 ~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~-~s~--~~~~~~w~~~ 311 (335)
+...+.+++|+|++++|++|+.||.|++||+.++..+..... + -....+.|..... .++ ++.+++|..+
T Consensus 333 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 333 HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE-T---TTKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------------------------------------------
T ss_pred CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCc-e---EeccccccccceeecccCccCceeecCCc
Confidence 446688999999999999999999999999988765543322 1 1223444433322 222 3568999654
No 102
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-32 Score=240.40 Aligned_cols=252 Identities=13% Similarity=0.189 Sum_probs=199.5
Q ss_pred ceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC--CCceEeeecCCCCCeEEEEECCC--CCEEEEeeCCCc
Q psy16316 55 NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH--DNKYIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKT 130 (335)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~--~~~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~ 130 (335)
....+.+|...|..++|++++. .+++++.|+.|++|++. +.+.+..+.+|...|++++|+++ +++|++|+.|+.
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGK--RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSS--EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred ccEEecCCcccEEEEEEcCCCC--EEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 3456678899999999998765 45666679999999998 66778889999999999999987 899999999999
Q ss_pred EEEeecCCCCcee--EE-EecCCcceEEECCC--CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc
Q psy16316 131 VRLWDLRSPNCQG--IM-HVSGSRPIAAFDPE--GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA 205 (335)
Q Consensus 131 i~vWd~~~~~~~~--~~-~~~~~~~~~~~~~~--~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 205 (335)
|++||+.+++... .. .+...+..+.|+|+ +.++++++.|+.|++||++......... ...+...+.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~v~~~~~~~ 157 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHAIGVNSASWAP 157 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE---EECCTTCEEEEEECC
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE---ecCCCCceEEEEEcC
Confidence 9999999876322 22 23445667889999 9999999999999999998643222221 223456788999999
Q ss_pred -------------CCCEEEEEeCCCeEEEEECCCCeeeeee-cccccCCCCceEEEEcCC---CcEEEEEeCCCcEEEEE
Q psy16316 206 -------------DGKYILISTNGSIIRTFDAYNGQCLQTL-AGFLNNKGCPLEASFTPD---SKYVISGSTDGRIHIWN 268 (335)
Q Consensus 206 -------------~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~sp~---~~~l~tgs~dg~v~iwd 268 (335)
++.++++++.|+.|++||+++++....+ .....|...+.+++|+|+ +++|++++.||.|++||
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp CC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 6999999999999999999876533211 222345667889999999 89999999999999999
Q ss_pred CCCCe----eEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 269 AEKGF----KVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 269 ~~~~~----~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
+.++. ........|...|++++|+|+++++++++ +.+++|..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 98763 22222344889999999999999999876 569999875
No 103
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.5e-31 Score=238.69 Aligned_cols=254 Identities=15% Similarity=0.148 Sum_probs=199.6
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeee--ecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV--FSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
+..+.+.+|.+.|+++.|+|+|++|++|+.||+|++||+++++..... ..+...+..++|.+++. .+++++.|+.+
T Consensus 43 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v 120 (372)
T 1k8k_C 43 VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK--KFAVGSGSRVI 120 (372)
T ss_dssp EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSS--EEEEEETTSSE
T ss_pred EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCC--EEEEEeCCCEE
Confidence 367788999999999999999999999999999999999888754433 55777899999998764 45556679999
Q ss_pred EEEEcCCCce----EeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecC------------------CCCceeEE-E
Q psy16316 90 RYLSLHDNKY----IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLR------------------SPNCQGIM-H 146 (335)
Q Consensus 90 ~~~~~~~~~~----~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~------------------~~~~~~~~-~ 146 (335)
++||+..+.. .....+|...|.+++|+|++++|++++.|+.|++||++ .+.+...+ .
T Consensus 121 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
T 1k8k_C 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS 200 (372)
T ss_dssp EEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC
T ss_pred EEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC
Confidence 9999988762 33447899999999999999999999999999999964 33333333 2
Q ss_pred ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCC
Q psy16316 147 VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYN 226 (335)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~ 226 (335)
+...+..+.|+|++.++++++.|+.|++||++... ....+ ..+...+.+++|+|++.+++++ .++.|++|++.+
T Consensus 201 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~---~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 201 SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM--AVATL---ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT--EEEEE---ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc--eeEEE---ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 33445678899999999999999999999998642 22222 2344567899999999988887 899999999987
Q ss_pred --Ce--eeeee---------------------------------cc-cccCCCCceEEEEc-CCC---cEEEEEeCCCcE
Q psy16316 227 --GQ--CLQTL---------------------------------AG-FLNNKGCPLEASFT-PDS---KYVISGSTDGRI 264 (335)
Q Consensus 227 --~~--~~~~~---------------------------------~~-~~~~~~~v~~~~~s-p~~---~~l~tgs~dg~v 264 (335)
++ +...+ .. ...|...|.+++|+ ++| ++|+||+.||.|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i 354 (372)
T 1k8k_C 275 AAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM 354 (372)
T ss_dssp TTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEE
T ss_pred cCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCce
Confidence 42 11000 11 12466778899866 676 999999999999
Q ss_pred EEEECCCCe
Q psy16316 265 HIWNAEKGF 273 (335)
Q Consensus 265 ~iwd~~~~~ 273 (335)
++|++.++.
T Consensus 355 ~~W~~~~~~ 363 (372)
T 1k8k_C 355 SIWDVRSLE 363 (372)
T ss_dssp EEEEHHHHH
T ss_pred EEEEecChh
Confidence 999986543
No 104
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-32 Score=247.48 Aligned_cols=247 Identities=13% Similarity=0.123 Sum_probs=192.6
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEcc---CCcceeeeec------------ccccceEEEEecCCCeeEEeec
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCE---LGTNKRTVFS------------KKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~---~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
+|.+.|++++|+|++.+|++|+.||+|++||++ .++....... +...+..+.+....+...++++
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL 188 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence 599999999999999999999999999999995 4544332221 1223344444444556677888
Q ss_pred CCCCeEEEEEcCCCceEeeecC--CCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCC--cceEE----
Q psy16316 84 KIDDTVRYLSLHDNKYIRYFPG--HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGS--RPIAA---- 155 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~~~--H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~--~~~~~---- 155 (335)
+.|+.|++||+.+++.+..+.+ |...|++++|+|++++|++|+.|++|++||++++++...+...+. +..+.
T Consensus 189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 268 (437)
T 3gre_A 189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF 268 (437)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence 8899999999999999999998 899999999999999999999999999999998877665543333 33453
Q ss_pred ECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEec---------------------c--CCCccceEEEEccCCCEEEE
Q psy16316 156 FDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA---------------------A--EKECDWTGIKFSADGKYILI 212 (335)
Q Consensus 156 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~---------------------~--~~~~~~~~~~~s~~~~~l~~ 212 (335)
+++++.++++|+.|++|++||+++.. ....+... . .+...+.+++|+ ++++|++
T Consensus 269 ~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s 345 (437)
T 3gre_A 269 YGKNSVIVVGGSSKTFLTIWNFVKGH--CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT 345 (437)
T ss_dssp TCTTEEEEEEESTTEEEEEEETTTTE--EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE
T ss_pred cCCCccEEEEEcCCCcEEEEEcCCCc--EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe
Confidence 34578899999999999999997532 11111100 0 134457889999 7899999
Q ss_pred EeCCCeEEEEECCCCeeeeeecccc----------------------------------cCCCCceEEEEcCC--CcEEE
Q psy16316 213 STNGSIIRTFDAYNGQCLQTLAGFL----------------------------------NNKGCPLEASFTPD--SKYVI 256 (335)
Q Consensus 213 ~~~~~~i~i~d~~~~~~~~~~~~~~----------------------------------~~~~~v~~~~~sp~--~~~l~ 256 (335)
++.|+.|++||+.++++...+.++. .|...|.+++|+++ +.+|+
T Consensus 346 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~ 425 (437)
T 3gre_A 346 DEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLV 425 (437)
T ss_dssp EGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEE
T ss_pred cCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEE
Confidence 9999999999999988777766531 15667889999998 78999
Q ss_pred EEeCCCcEEEEE
Q psy16316 257 SGSTDGRIHIWN 268 (335)
Q Consensus 257 tgs~dg~v~iwd 268 (335)
+|+.||.|+||+
T Consensus 426 s~~~dG~I~iw~ 437 (437)
T 3gre_A 426 ACDNSGLIGIFQ 437 (437)
T ss_dssp EEETTSCEEEEC
T ss_pred EEcCCceEEEeC
Confidence 999999999995
No 105
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-33 Score=249.48 Aligned_cols=241 Identities=12% Similarity=0.159 Sum_probs=185.7
Q ss_pred ccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC--ceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCC
Q psy16316 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN--KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP 139 (335)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~--~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~ 139 (335)
+...|.+++|++++. .+++++.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|++|++||+.++
T Consensus 10 ~~~~v~~~~~s~~g~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT--EFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp CSSCCSCCEECSSSS--EEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred CCCcEEEEEECCCCC--EEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence 456789999998655 5677778999999999988 788889999999999999999999999999999999999887
Q ss_pred C---cee-EEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC
Q psy16316 140 N---CQG-IMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215 (335)
Q Consensus 140 ~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 215 (335)
. ... ...+...+..+.|+|++.++++++.|++|++||++........ ......+...+.+++|+|++++|++++.
T Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 88 GTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS-KHLKRPLRSTILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp -CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCC-EEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred CceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceee-eEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence 6 222 2234455667899999999999999999999999864311011 1112225667899999999999999999
Q ss_pred CCeEEEEECCC------------------CeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCee---
Q psy16316 216 GSIIRTFDAYN------------------GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK--- 274 (335)
Q Consensus 216 ~~~i~i~d~~~------------------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~--- 274 (335)
|+.|++||++. +++...+ .+...+.+++|+|++++|++|+.|+.|++||+.++..
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred CCEEEEEEEEecccCCCccccccccccchhhhhhcc----cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence 99999999853 3333333 4667789999999999999999999999999988765
Q ss_pred -EEEeCCCCCCCeEEEEeCCCCcEEEeeec-eeEEecc
Q psy16316 275 -VCVLDADHPSPVQTIQFNPKFNMMASACT-NLAFWIP 310 (335)
Q Consensus 275 -~~~~~~~h~~~v~~v~~sp~~~~~~s~~~-~~~~w~~ 310 (335)
...+ ..|..+|.+++|+|++.++++++. .+.+|..
T Consensus 243 ~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~ 279 (377)
T 3dwl_C 243 ALITV-KLSQLPLRSLLWANESAIVAAGYNYSPILLQG 279 (377)
T ss_dssp ECCCE-ECSSSCEEEEEEEETTEEEEEESSSSEEEECC
T ss_pred eeEee-cCCCCceEEEEEcCCCCEEEEEcCCcEEEEEe
Confidence 3444 358899999999999999999864 3556644
No 106
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=5.4e-31 Score=240.41 Aligned_cols=285 Identities=14% Similarity=0.135 Sum_probs=223.1
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceee-----eecccccceEEEEecCCCeeEEeecCCC
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT-----VFSKKYGVDLIRFTHAKQAAIHASTKID 86 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~d 86 (335)
+....+..+.. +.+++|+|++.++++++.|++|++||+++++.... ...|...+..++|.+++ .++++++.|
T Consensus 114 ~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~s~~~d 190 (433)
T 3bws_A 114 RFISRFKTGFQ-PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN--ELWVSQMQA 190 (433)
T ss_dssp EEEEEEECSSC-BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT--EEEEEEGGG
T ss_pred eEEEEEcCCCC-ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC--EEEEEECCC
Confidence 44455555544 56999999888999999999999999999887653 23455678888886654 456677789
Q ss_pred CeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEE-EEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEE
Q psy16316 87 DTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF-ISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (335)
+.+++||+.+++.+..+.+|...+.+++|+|+++.+ ++++.|+.|++||+++++....+........++++|++..+++
T Consensus 191 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 270 (433)
T 3bws_A 191 NAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYI 270 (433)
T ss_dssp TEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEE
T ss_pred CEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEE
Confidence 999999999999999999999999999999999877 4555899999999998776555444444566789999998888
Q ss_pred EE--------cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEE-EEeCCCeEEEEECCCCeeeeeeccc
Q psy16316 166 GV--------NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYIL-ISTNGSIIRTFDAYNGQCLQTLAGF 236 (335)
Q Consensus 166 ~~--------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~~~~i~i~d~~~~~~~~~~~~~ 236 (335)
++ .|+.|++||+++.. ..... .....+.+++|+|+++.++ +++.++.|++||+.+++....+.
T Consensus 271 ~~~~~~~~~~~dg~i~~~d~~~~~--~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-- 342 (433)
T 3bws_A 271 AQFSASNQESGGGRLGIYSMDKEK--LIDTI----GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-- 342 (433)
T ss_dssp EEEESCTTCSCCEEEEEEETTTTE--EEEEE----EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE--
T ss_pred EECCCCccccCCCeEEEEECCCCc--EEeec----cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec--
Confidence 87 47899999997532 11111 1122456799999998665 55789999999999998777664
Q ss_pred ccCCCCceEEEEcCCCcEEEEEeC---------------CCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEee
Q psy16316 237 LNNKGCPLEASFTPDSKYVISGST---------------DGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 237 ~~~~~~v~~~~~sp~~~~l~tgs~---------------dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~ 301 (335)
+...+..++|+|++++|++++. ||.|++||..++.....+.. ...+..++|+|++++++++
T Consensus 343 --~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~ 418 (433)
T 3bws_A 343 --VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--GNQPTGLDVSPDNRYLVIS 418 (433)
T ss_dssp --CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSCEEEEE
T ss_pred --CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC--CCCCceEEEcCCCCEEEEE
Confidence 2345788999999999888876 57999999999887776653 4578999999999988766
Q ss_pred e---ceeEEeccc
Q psy16316 302 C---TNLAFWIPT 311 (335)
Q Consensus 302 ~---~~~~~w~~~ 311 (335)
+ +.+++|.++
T Consensus 419 ~~~d~~i~v~~~~ 431 (433)
T 3bws_A 419 DFLDHQIRVYRRD 431 (433)
T ss_dssp ETTTTEEEEEEET
T ss_pred ECCCCeEEEEEec
Confidence 3 578999753
No 107
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.3e-31 Score=245.22 Aligned_cols=260 Identities=21% Similarity=0.325 Sum_probs=194.3
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
..+....+.+|.+.|.++.| ++.+|++|+.||+|++||+++++....+..|...+..++|.+. .+++++.|+.+
T Consensus 162 ~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~----~l~s~s~dg~i 235 (435)
T 1p22_A 162 TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG----MMVTCSKDRSI 235 (435)
T ss_dssp SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTT----EEEEEETTSCE
T ss_pred CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC----EEEEeeCCCcE
Confidence 34566789999999999998 7899999999999999999999998888888888999988632 56777789999
Q ss_pred EEEEcCCCceE---eeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEE
Q psy16316 90 RYLSLHDNKYI---RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 90 ~~~~~~~~~~~---~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 165 (335)
++||+.++... ..+.+|...|.++++ +++.+++|+.|++|++||++++++...+. +...+..+. .++.++++
T Consensus 236 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~ 311 (435)
T 1p22_A 236 AVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ--YRDRLVVS 311 (435)
T ss_dssp EEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE--EETTEEEE
T ss_pred EEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEE--eCCCEEEE
Confidence 99999887655 678899999999999 67899999999999999999988776553 223333334 46789999
Q ss_pred EEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCe---------eeeeeccc
Q psy16316 166 GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQ---------CLQTLAGF 236 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~---------~~~~~~~~ 236 (335)
|+.|++|++||+++.. ... ....+...+.+++| ++.++++++.|+.|++||+.+++ ++..+.+
T Consensus 312 g~~dg~i~iwd~~~~~--~~~---~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~- 383 (435)
T 1p22_A 312 GSSDNTIRLWDIECGA--CLR---VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE- 383 (435)
T ss_dssp EETTSCEEEEETTTCC--EEE---EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC-
T ss_pred EeCCCeEEEEECCCCC--EEE---EEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC-
Confidence 9999999999998632 222 22334556777877 78899999999999999987665 5666654
Q ss_pred ccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCC
Q psy16316 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293 (335)
Q Consensus 237 ~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp 293 (335)
+...+.+++| ++++|++|+.||.|++||+.+........ ...+...+.|.+
T Consensus 384 --h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~ 434 (435)
T 1p22_A 384 --HSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP--PRSPSRTYTYIS 434 (435)
T ss_dssp --CSSCCCCEEE--CSSCEEECCSSSEEEEEC-------------------------
T ss_pred --CCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC--CCCCccceeeec
Confidence 4456777888 77899999999999999998765443332 234556666654
No 108
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-31 Score=232.47 Aligned_cols=246 Identities=19% Similarity=0.206 Sum_probs=199.6
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCC---cceeeeecccccceEEEEecCCCeeEEeecCCCC
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELG---TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDD 87 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 87 (335)
.+....+..|.+.|.++.|+|++.+|++|+.||.+++||+... +....+..|...+..+.|. + ..+++++.|+
T Consensus 49 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~--~~l~~~~~d~ 124 (313)
T 3odt_A 49 QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--D--GVVISGSWDK 124 (313)
T ss_dssp SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--T--TEEEEEETTS
T ss_pred CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--C--CEEEEEeCCC
Confidence 3456778899999999999999999999999999999998765 3455666778888888883 2 2566777899
Q ss_pred eEEEEEcCCCceEeeecCCCCCeEEEEECC-CCCEEEEeeCCCcEEEeecCCCCceeEEE--ecCCcceEEECCCCCEEE
Q psy16316 88 TVRYLSLHDNKYIRYFPGHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRSPNCQGIMH--VSGSRPIAAFDPEGLIFG 164 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 164 (335)
.+++|| .++....+.+|...|.++.++| +++.+++++.|+.|++||.. .....+. .......+.++|++. ++
T Consensus 125 ~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~-~~ 199 (313)
T 3odt_A 125 TAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGH-FI 199 (313)
T ss_dssp EEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETTE-EE
T ss_pred CEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCCe-EE
Confidence 999999 7778888999999999999988 88999999999999999943 2333332 344556778899888 88
Q ss_pred EEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCce
Q psy16316 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 165 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 244 (335)
+++.++.|++||++... ....+ ..+...+.+++|+|++ .+++++.|+.|++||+.+++....+..+ ...+.
T Consensus 200 ~~~~dg~i~i~d~~~~~--~~~~~---~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~i~ 270 (313)
T 3odt_A 200 SCSNDGLIKLVDMHTGD--VLRTY---EGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP---AISIW 270 (313)
T ss_dssp EEETTSEEEEEETTTCC--EEEEE---ECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS---SSCEE
T ss_pred EccCCCeEEEEECCchh--hhhhh---hcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc---CceEE
Confidence 99999999999998632 22222 2345678899999999 5889999999999999999988877653 45688
Q ss_pred EEEEcCCCcEEEEEeCCCcEEEEECCCCeeE
Q psy16316 245 EASFTPDSKYVISGSTDGRIHIWNAEKGFKV 275 (335)
Q Consensus 245 ~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~ 275 (335)
+++|+|+++ +++++.||.|++||+.++...
T Consensus 271 ~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 271 SVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred EEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 999999998 667999999999999876543
No 109
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.8e-31 Score=241.46 Aligned_cols=253 Identities=16% Similarity=0.259 Sum_probs=193.6
Q ss_pred cccceeeeccCC------------ccEEEEEECCCC--CEEEEecCCCeEEEEEccCCcce-------------------
Q psy16316 10 SYKVAKLFRENT------------DKITSIDYSADG--LLLISCSEDDQIVIYDCELGTNK------------------- 56 (335)
Q Consensus 10 ~~~~~~~~~~h~------------~~V~~v~~s~~g--~~lasgs~Dg~i~lwd~~~~~~~------------------- 56 (335)
.|++...+++|. +.|+++.|+|++ .+|++|+.|++|++||+.++...
T Consensus 70 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~ 149 (447)
T 3dw8_B 70 EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTV 149 (447)
T ss_dssp CEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCC
T ss_pred ceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccc
Confidence 355678899998 889999999998 89999999999999999764431
Q ss_pred --------------------ee-eecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC-CceEe-------eecCCC
Q psy16316 57 --------------------RT-VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD-NKYIR-------YFPGHT 107 (335)
Q Consensus 57 --------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~-------~~~~H~ 107 (335)
+. ...|...+..++|++++. .++++ .|+.|++||+.. ++.+. .+.+|.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 226 (447)
T 3dw8_B 150 TTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELT 226 (447)
T ss_dssp CSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCC
T ss_pred cceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccC
Confidence 11 245778899999998755 34445 699999999984 44444 367899
Q ss_pred CCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCc----eeEEEecC-------------CcceEEECCCCCEEEEEEcC
Q psy16316 108 KKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNC----QGIMHVSG-------------SRPIAAFDPEGLIFGVGVNS 169 (335)
Q Consensus 108 ~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~----~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~d 169 (335)
..|.+++|+|++ ++|++|+.|++|++||+++++. ...+.... .+..+.|+|++.++++++.
T Consensus 227 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~- 305 (447)
T 3dw8_B 227 EVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY- 305 (447)
T ss_dssp CCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-
T ss_pred cceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-
Confidence 999999999998 9999999999999999998775 33332221 5667899999999999999
Q ss_pred CeEEEEEccCCCCCceeeEEeccCCCc------------cceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc-
Q psy16316 170 DTIKLYDVRSFDKGPFSNFKFAAEKEC------------DWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF- 236 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~~~~~~~~~~~------------~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~- 236 (335)
+.|++||++... .+...+........ .+..++|+|++++|++++.|+.|++||+.+++.+. +..+
T Consensus 306 ~~v~iwd~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~ 383 (447)
T 3dw8_B 306 LSVKVWDLNMEN-RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASR 383 (447)
T ss_dssp SEEEEEETTCCS-SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCS
T ss_pred CeEEEEeCCCCc-cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecc
Confidence 999999998521 22222222111000 12248999999999999999999999999887653 2211
Q ss_pred -----------------------------ccCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 237 -----------------------------LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 237 -----------------------------~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
......+..++|+|++++||+++.++ +++|..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 384 ENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 12234577899999999999999886 888874
No 110
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=3.9e-31 Score=241.82 Aligned_cols=252 Identities=14% Similarity=0.222 Sum_probs=201.2
Q ss_pred eeeccCCccEEEEEECCC-CCEEEEecCCCeEEEEEccC----------CcceeeeecccccceEEEEecCCCeeEEeec
Q psy16316 15 KLFRENTDKITSIDYSAD-GLLLISCSEDDQIVIYDCEL----------GTNKRTVFSKKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~-g~~lasgs~Dg~i~lwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
....+|.+.|++++|+|+ +.+||+|+.||+|++||+.. ......+..|...+..++|.+.... .++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEE
Confidence 345689999999999997 68999999999999999987 4556677788889999999987653 45667
Q ss_pred CCCCeEEEEEcCCCce-------EeeecCCCCCeEEEEECC-CCCEEEEeeCCCcEEEeecCCCC---ceeEE-EecCCc
Q psy16316 84 KIDDTVRYLSLHDNKY-------IRYFPGHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRSPN---CQGIM-HVSGSR 151 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~-------~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~---~~~~~-~~~~~~ 151 (335)
+.|+.|++|++..+.. ...+.+|...|.+++|+| ++.+|++++.|+.|++||++++. ....+ .+...+
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 7899999999987322 456779999999999999 67899999999999999999763 33333 334556
Q ss_pred ceEEECCCCC-EEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCC-EEEEEeCCCeEEEEECCCCee
Q psy16316 152 PIAAFDPEGL-IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK-YILISTNGSIIRTFDAYNGQC 229 (335)
Q Consensus 152 ~~~~~~~~~~-~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~~~i~i~d~~~~~~ 229 (335)
..+.|+|++. ++++|+.|++|++||++... .+...+. .+...+.+++|+|+++ ++++++.|+.|++||+.....
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~---~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLK-LKLHSFE---SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEE---CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEee---cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 7789999886 78999999999999998643 2233222 3456788999999995 688899999999999987221
Q ss_pred e-----------eeecccccCCCCceEEEEcCCCc-EEEEEeCCCcEEEEECCC
Q psy16316 230 L-----------QTLAGFLNNKGCPLEASFTPDSK-YVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 230 ~-----------~~~~~~~~~~~~v~~~~~sp~~~-~l~tgs~dg~v~iwd~~~ 271 (335)
. ..+..+..+...+.+++|+|+++ +|++++.||.|++|++.+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 0 12223344566789999999999 999999999999999864
No 111
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.7e-31 Score=240.05 Aligned_cols=287 Identities=15% Similarity=0.149 Sum_probs=189.6
Q ss_pred cEEEEEE---CCCCCEEEEecCCCeEEEEEccCCcc-------eee--eecccccceEEEEec-----------------
Q psy16316 23 KITSIDY---SADGLLLISCSEDDQIVIYDCELGTN-------KRT--VFSKKYGVDLIRFTH----------------- 73 (335)
Q Consensus 23 ~V~~v~~---s~~g~~lasgs~Dg~i~lwd~~~~~~-------~~~--~~~~~~~~~~~~~~~----------------- 73 (335)
...++.| +|++..|+.++.|+.|++|+...... ... ...+...+..+.+.+
T Consensus 17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (393)
T 4gq1_A 17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNS 96 (393)
T ss_dssp CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------
T ss_pred CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceee
Confidence 4556666 45555566666788999998643211 011 111222333333321
Q ss_pred -CCCeeEEeecCCCCeEEEEEcCCCceE-----eeecCCCCCeEEEEECC--------CCCEEEEeeCCCcEEEeecCCC
Q psy16316 74 -AKQAAIHASTKIDDTVRYLSLHDNKYI-----RYFPGHTKKVNSLCLSP--------IDDTFISGSYDKTVRLWDLRSP 139 (335)
Q Consensus 74 -~~~~~~~~~~~~d~~i~~~~~~~~~~~-----~~~~~H~~~V~~~~~~~--------~~~~l~s~s~D~~i~vWd~~~~ 139 (335)
.....++++++.|++|++||+..+... ..++||.+.|++++|+| ++++|+|||.|++||+||++++
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 112346788889999999999887543 35789999999999997 7889999999999999999876
Q ss_pred Ccee-EEEecCCcceEEECCCC-CEEEEEEcCCeEEEEEccCCCCCceee------------EE--------eccCCCcc
Q psy16316 140 NCQG-IMHVSGSRPIAAFDPEG-LIFGVGVNSDTIKLYDVRSFDKGPFSN------------FK--------FAAEKECD 197 (335)
Q Consensus 140 ~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~iwd~~~~~~~~~~~------------~~--------~~~~~~~~ 197 (335)
.+.. ...+......++|+|++ .++++++.|++|++||++......... .. ....+...
T Consensus 177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 256 (393)
T 4gq1_A 177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS 256 (393)
T ss_dssp EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence 6543 33455556678899987 589999999999999998643211000 00 01122334
Q ss_pred ceEEEEc-cCCCEEEEEeCCCeEEEEECCCCeeeeeecccccC---------------CCCceEEEEcC--CCcEEEEEe
Q psy16316 198 WTGIKFS-ADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN---------------KGCPLEASFTP--DSKYVISGS 259 (335)
Q Consensus 198 ~~~~~~s-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~---------------~~~v~~~~~sp--~~~~l~tgs 259 (335)
+..+.|+ |+++.+++++.|+.+++||+..++....+..+... ........|+| ++.++++|+
T Consensus 257 v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs 336 (393)
T 4gq1_A 257 LANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS 336 (393)
T ss_dssp CSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET
T ss_pred ceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC
Confidence 5667775 89999999999999999999877665544332211 11122344554 445788899
Q ss_pred CCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec-eeEEecc
Q psy16316 260 TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT-NLAFWIP 310 (335)
Q Consensus 260 ~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~-~~~~w~~ 310 (335)
.||+|++||..++...... ..|..+|++|+|||+|++||+++. .+.+|.+
T Consensus 337 ~Dg~V~lwd~~~~~~~~~~-~~~~~~V~svafspdG~~LA~as~~Gv~lvrL 387 (393)
T 4gq1_A 337 QHGLIQLINTYEKDSNSIP-IQLGMPIVDFCWHQDGSHLAIATEGSVLLTRL 387 (393)
T ss_dssp TTTEEEEEETTCTTCCEEE-EECSSCEEEEEECTTSSEEEEEESSEEEEEEE
T ss_pred CCCEEEEEECCCCcEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 9999999999988766554 357889999999999999999974 4555543
No 112
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.7e-30 Score=228.70 Aligned_cols=248 Identities=19% Similarity=0.249 Sum_probs=195.1
Q ss_pred eecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC----ceEeeecCCCCCeEEEEECC--CCCEEEEeeCCCcEE
Q psy16316 59 VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN----KYIRYFPGHTKKVNSLCLSP--IDDTFISGSYDKTVR 132 (335)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~----~~~~~~~~H~~~V~~~~~~~--~~~~l~s~s~D~~i~ 132 (335)
+.+|...|..++|++++. .+++++.|+.|++||+.++ +....+.+|...|.+++|+| ++++|++|+.|++|+
T Consensus 7 ~~gH~~~v~~~~~~~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGR--HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp ECCCSSCEEEEEECSSSS--EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred CcccccceeEEEEcCCCC--EEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 456888999999998655 4566778999999999876 46777889999999999999 589999999999999
Q ss_pred EeecCCCCc---------eeEE-EecCCcceEEECCC--CCEEEEEEcCCeEEEEEccCCCCCceeeEEe--------cc
Q psy16316 133 LWDLRSPNC---------QGIM-HVSGSRPIAAFDPE--GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKF--------AA 192 (335)
Q Consensus 133 vWd~~~~~~---------~~~~-~~~~~~~~~~~~~~--~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~--------~~ 192 (335)
+||++++.. ...+ .+...+..+.|+|+ +.++++++.|+.|++||++............ ..
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 999987632 2222 23445567889999 9999999999999999998754322111110 11
Q ss_pred CCCccceEEEEccC---CCEEEEEeCCCeEEEEECCCCee--eeeecccccCCCCceEEEEcCCC----cEEEEEeCCCc
Q psy16316 193 EKECDWTGIKFSAD---GKYILISTNGSIIRTFDAYNGQC--LQTLAGFLNNKGCPLEASFTPDS----KYVISGSTDGR 263 (335)
Q Consensus 193 ~~~~~~~~~~~s~~---~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~----~~l~tgs~dg~ 263 (335)
.+...+.+++|+|+ +.++++++.++.+.+|+...++. ...+ ..+...+.+++|+|++ ++|++|+.||.
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~ 241 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKL---PGHKSLIRSISWAPSIGRWYQLIATGCKDGR 241 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEEC---CCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeec---CCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence 33456788999997 99999999999998888777654 3333 3456678999999998 89999999999
Q ss_pred EEEEECCCC----------------------------------------------eeEEEeCCCCCCCeEEEEeCCCCcE
Q psy16316 264 IHIWNAEKG----------------------------------------------FKVCVLDADHPSPVQTIQFNPKFNM 297 (335)
Q Consensus 264 v~iwd~~~~----------------------------------------------~~~~~~~~~h~~~v~~v~~sp~~~~ 297 (335)
|++||+..+ .....+ .+|.++|++++|+|++++
T Consensus 242 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 242 IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH-DDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp EEEEEEEECC---------------------------------------CCSEEEEEEEEE-CTTSSCEEEEEECSSSCC
T ss_pred EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE-ecccccEEEEEEcCCCCE
Confidence 999998764 233334 469999999999999999
Q ss_pred EEeee--ceeEEecccc
Q psy16316 298 MASAC--TNLAFWIPTY 312 (335)
Q Consensus 298 ~~s~~--~~~~~w~~~~ 312 (335)
|++++ +.+++|..+.
T Consensus 321 l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 321 LSSAGDDGKVRLWKATY 337 (351)
T ss_dssp EEEEETTSCEEEEEECT
T ss_pred EEEecCCCcEEEEecCc
Confidence 99997 5699998654
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=5.5e-30 Score=234.18 Aligned_cols=292 Identities=17% Similarity=0.288 Sum_probs=217.3
Q ss_pred cEEEEEECCCC----------CEEEEecC----CCeEEEEEccC--------------------------Ccc-eeeeec
Q psy16316 23 KITSIDYSADG----------LLLISCSE----DDQIVIYDCEL--------------------------GTN-KRTVFS 61 (335)
Q Consensus 23 ~V~~v~~s~~g----------~~lasgs~----Dg~i~lwd~~~--------------------------~~~-~~~~~~ 61 (335)
+..++.|.|+. .+|+.|+. ...|.+.++.. ++. ......
T Consensus 47 p~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 126 (430)
T 2xyi_A 47 PSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKIN 126 (430)
T ss_dssp CCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEEE
T ss_pred CceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEEc
Confidence 45788888865 45777664 45677776531 111 133456
Q ss_pred ccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC----------CceEeeecCCCCCeEEEEECCCCC-EEEEeeCCCc
Q psy16316 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD----------NKYIRYFPGHTKKVNSLCLSPIDD-TFISGSYDKT 130 (335)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~----------~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~ 130 (335)
|...+..++|.+. ...++++++.|+.|++|++.. .+.+..+.+|...|.+++|+|++. +|++|+.||+
T Consensus 127 h~~~v~~l~~~p~-~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 127 HEGEVNRARYMPQ-NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp ESSCCSEEEEETT-EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred CCCcEEEEEECCC-CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 7788999999985 245677778899999999987 567788899999999999999988 9999999999
Q ss_pred EEEeecCCCCce-------eEE-EecCCcceEEECC-CCCEEEEEEcCCeEEEEEccCCCC-CceeeEEeccCCCccceE
Q psy16316 131 VRLWDLRSPNCQ-------GIM-HVSGSRPIAAFDP-EGLIFGVGVNSDTIKLYDVRSFDK-GPFSNFKFAAEKECDWTG 200 (335)
Q Consensus 131 i~vWd~~~~~~~-------~~~-~~~~~~~~~~~~~-~~~~~~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~ 200 (335)
|++||+..+... ..+ .+...+..+.|+| ++.++++++.|+.|++||++.... .+...+ ..+...+++
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~v~~ 282 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV---DAHTAEVNC 282 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE---ECCSSCEEE
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe---ecCCCCeEE
Confidence 999999874321 111 2334456788999 788999999999999999986421 222222 234567899
Q ss_pred EEEccCCC-EEEEEeCCCeEEEEECCC-CeeeeeecccccCCCCceEEEEcCCCc-EEEEEeCCCcEEEEECCC------
Q psy16316 201 IKFSADGK-YILISTNGSIIRTFDAYN-GQCLQTLAGFLNNKGCPLEASFTPDSK-YVISGSTDGRIHIWNAEK------ 271 (335)
Q Consensus 201 ~~~s~~~~-~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~tgs~dg~v~iwd~~~------ 271 (335)
++|+|++. ++++++.++.|++||+++ .+.+..+.. +...+.+++|+|+++ +|++++.|+.|++||+..
T Consensus 283 i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~---h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES---HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC---CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec---CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 99999997 688999999999999997 445555544 456788999999985 799999999999999876
Q ss_pred --------CeeEEEeCCCCCCCeEEEEeCCCCc-EEEeee--ceeEEecccccccccCCCCc
Q psy16316 272 --------GFKVCVLDADHPSPVQTIQFNPKFN-MMASAC--TNLAFWIPTYLSNHQEPDTI 322 (335)
Q Consensus 272 --------~~~~~~~~~~h~~~v~~v~~sp~~~-~~~s~~--~~~~~w~~~~~~~~~~~~~~ 322 (335)
...+. ...+|...|++++|+|+++ ++++++ +.+++|.++...-.+....+
T Consensus 360 ~~~~~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 420 (430)
T 2xyi_A 360 TEDAEDGPPELLF-IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEI 420 (430)
T ss_dssp HHHHHHCCTTEEE-ECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHHCC-----
T ss_pred ccccccCCcceEE-EcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccccccCCCccC
Confidence 23333 3467999999999999998 888876 56899987443333333333
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=4e-29 Score=225.00 Aligned_cols=255 Identities=16% Similarity=0.157 Sum_probs=204.6
Q ss_pred ccceeeeccCCccEEEEEECCCCCEE-EEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLL-ISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~l-asgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
.++.+.+.+|.. +.++.|+|+|++| ++++.|++|++||+++++....+..+. .+..++|++++... ++++..++.|
T Consensus 22 ~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l-~~~~~~~~~v 98 (391)
T 1l0q_A 22 NKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQV-YVTNMASSTL 98 (391)
T ss_dssp TEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEE-EEEETTTTEE
T ss_pred CeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEE-EEEECCCCEE
Confidence 455667777765 8999999999976 788899999999999998877765544 88899999876644 3445568999
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEE-EEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEE-EEEE
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF-ISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIF-GVGV 167 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 167 (335)
++||+.+++.+..+..| ..+.+++|+|+++.| ++++.|+.|++||+.+++....+........+.++|++..+ +++.
T Consensus 99 ~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 177 (391)
T 1l0q_A 99 SVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANF 177 (391)
T ss_dssp EEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeC
Confidence 99999999988888755 468999999999877 78889999999999988877666555555678899999876 6677
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe---CCCeEEEEECCCCeeeeeecccccCCCCce
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST---NGSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 244 (335)
.++.|++||++... ....+ .....+.+++|+|+++++++++ .++.|++||+.+++.+..+..+ ..+.
T Consensus 178 ~~~~v~~~d~~~~~--~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~----~~~~ 247 (391)
T 1l0q_A 178 DSMSISVIDTVTNS--VIDTV----KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG----PDPA 247 (391)
T ss_dssp TTTEEEEEETTTTE--EEEEE----ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC----SSEE
T ss_pred CCCEEEEEECCCCe--EEEEE----ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC----CCcc
Confidence 88999999997632 11111 1233567899999999999887 6899999999999887776543 2367
Q ss_pred EEEEcCCCcEE-EEEeCCCcEEEEECCCCeeEEEeC
Q psy16316 245 EASFTPDSKYV-ISGSTDGRIHIWNAEKGFKVCVLD 279 (335)
Q Consensus 245 ~~~~sp~~~~l-~tgs~dg~v~iwd~~~~~~~~~~~ 279 (335)
.++|+|++++| ++++.|+.|++||+.++.....+.
T Consensus 248 ~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 248 GIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 89999999877 777899999999999988776654
No 115
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.98 E-value=1.5e-30 Score=225.31 Aligned_cols=181 Identities=13% Similarity=0.208 Sum_probs=136.7
Q ss_pred cCCCCeEEEEEc-CCCceEeeecCCCCCeEEEEECC---CCCEEEEeeCCCcEEEeecCCCCceeEEEecC----CcceE
Q psy16316 83 TKIDDTVRYLSL-HDNKYIRYFPGHTKKVNSLCLSP---IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG----SRPIA 154 (335)
Q Consensus 83 ~~~d~~i~~~~~-~~~~~~~~~~~H~~~V~~~~~~~---~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~----~~~~~ 154 (335)
.+.|+.|++|++ ..++.+..+.+|...+..++|++ ++..|+|||.|++||+||++++++...+...+ ....+
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~v 232 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHK 232 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEE
T ss_pred cCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEE
Confidence 457999999999 45888889999999999999999 67999999999999999999999888774221 23345
Q ss_pred EECCCCCEE------------EEEEcCCeEEEEEccCCCCCceeeEE--eccCCCccceEEEEccCCCEEEEEeCCCeEE
Q psy16316 155 AFDPEGLIF------------GVGVNSDTIKLYDVRSFDKGPFSNFK--FAAEKECDWTGIKFSADGKYILISTNGSIIR 220 (335)
Q Consensus 155 ~~~~~~~~~------------~~~~~d~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~ 220 (335)
+|+|+|.++ ++|+.|+++++||..+.. ....+. +...+...+ +..+.++.++++++.|++|+
T Consensus 233 afSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk--~l~v~~~~~p~Gh~~~~--lsg~~sg~~lASgS~DgTIk 308 (356)
T 2w18_A 233 AYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL--SVGVMLYCLPPGQAGRF--LEGDVKDHCAAAILTSGTIA 308 (356)
T ss_dssp EEEETTEEEEEEC------------CCEEEEEEETTTTE--EEEEEEECCCTTCCCCE--EEEEEETTEEEEEETTSCEE
T ss_pred EECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE--EEEEEEeeccCCCccee--EccccCCCEEEEEcCCCcEE
Confidence 789998876 567889999999987532 111111 111222222 33344477899999999999
Q ss_pred EEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 221 TFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 221 i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
+||+.+++++.++.+|... .+..++|||||++|++|+.|++|+|||.
T Consensus 309 IWDl~tGk~l~tL~gH~~~--vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 309 IWDLLLGQCTALLPPVSDQ--HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEETTTCSEEEEECCC--C--CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEECCCCcEEEEecCCCCC--eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999999998765432 2335899999999999999999999985
No 116
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.7e-30 Score=234.80 Aligned_cols=246 Identities=11% Similarity=0.000 Sum_probs=170.8
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCccee-----eeecccccceEEEEecC------CCeeEEeecCCCC
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR-----TVFSKKYGVDLIRFTHA------KQAAIHASTKIDD 87 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~-----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~d~ 87 (335)
.|...+....+++++.+||+|+.|++|+|||.++++... .+.+|...|..++|+|. .+..++++++.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 345555555566778899999999999999999886543 24568889999999862 2456889999999
Q ss_pred eEEEEEcCCCceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEE--------------------
Q psy16316 88 TVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMH-------------------- 146 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~-------------------- 146 (335)
++++||+.++..+..+.+|...|.+++|+|++ ++|++|+.|++|++||+++++......
T Consensus 167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 99999999988888888899999999999987 489999999999999998765432110
Q ss_pred ------ecCCcceEE-ECCCCCEEEEEEcCCeEEEEEccCCCCCceee--------------EEeccCCCccceEEEEcc
Q psy16316 147 ------VSGSRPIAA-FDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSN--------------FKFAAEKECDWTGIKFSA 205 (335)
Q Consensus 147 ------~~~~~~~~~-~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~s~ 205 (335)
+......+. ..+++..+++++.|+++++||+.......... .......... ....++|
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 325 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSL-LGACPHP 325 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCS-SCCEECS
T ss_pred eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcc-eeEEEcc
Confidence 011122333 45899999999999999999987532110000 0000000111 1233433
Q ss_pred --CCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 206 --DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 206 --~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
++.++++++.|+.|++||+.++++...+.+ +...|.+++|+|||++||+++.|| +.+|.+
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~---~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ---LGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCEEEEE---CSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEecC---CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 334566778899999999999987776654 445789999999999999999877 666654
No 117
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.2e-31 Score=243.40 Aligned_cols=244 Identities=9% Similarity=0.068 Sum_probs=192.1
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccc-----cceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY-----GVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
.|.+.|.+++|||+|++||+++.||+++|||.+. +...+. +.. .+..++|+|++. .+++++.|++|++||
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~--~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIES--SIVVGNEDGELQFFS 157 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSS--CEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCC--EEEEEcCCCEEEEEE
Confidence 6789999999999999999999999999999654 444444 443 488999998766 456677899999999
Q ss_pred cCCCce-------Eeee----cCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCce---eEE--EecCCcceEEEC
Q psy16316 94 LHDNKY-------IRYF----PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ---GIM--HVSGSRPIAAFD 157 (335)
Q Consensus 94 ~~~~~~-------~~~~----~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~---~~~--~~~~~~~~~~~~ 157 (335)
+.+++. +.++ .||.+.|.+++|+|+| +++++.|++|++||+..+... ..+ .+...+..++|+
T Consensus 158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs 235 (588)
T 2j04_A 158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV 235 (588)
T ss_dssp CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE
T ss_pred CCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE
Confidence 998853 5666 7888999999999998 889999999999999887743 223 223345667787
Q ss_pred CCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEE--ccCCCEEEEEeCCCeEEEEECCCCeeeeeecc
Q psy16316 158 PEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKF--SADGKYILISTNGSIIRTFDAYNGQCLQTLAG 235 (335)
Q Consensus 158 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 235 (335)
+..+++++ +++|++||+.... ...+ ..++...+..++| +|++..++++..+|+ ++|...
T Consensus 236 --g~~LASa~-~~tIkLWd~~~~~---~~~~--~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------- 296 (588)
T 2j04_A 236 --DYKVVLTC-PGYVHKIDLKNYS---ISSL--KTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------- 296 (588)
T ss_dssp --TTEEEEEC-SSEEEEEETTTTE---EEEE--ECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------
T ss_pred --CCEEEEEe-CCeEEEEECCCCe---EEEE--EcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------
Confidence 58888887 5999999987521 2122 2246677889999 999999999999999 999876
Q ss_pred cccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee
Q psy16316 236 FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 236 ~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
.++|+||+..+++. |+++++|+...+. ...+ .+...|.+++|||+|+++|+++
T Consensus 297 ---------~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~--~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 297 ---------ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNY--ETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp ---------SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSS--CCEEEEEEEEECTTSSEEEEEE
T ss_pred ---------cEEECCCceEEEEc--CCEEEEEECCCCc-eeee--ccceEEEEEEECCCCCEEEEEE
Confidence 15699999888775 9999999975443 2122 2355799999999999999986
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2.9e-28 Score=219.34 Aligned_cols=263 Identities=13% Similarity=0.145 Sum_probs=207.9
Q ss_pred CEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEE
Q psy16316 34 LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSL 113 (335)
Q Consensus 34 ~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~ 113 (335)
.++++++.|++|++||+++++....+..+ ..+..++|++++... +++++.|+.+++||+.+++.+..+..|. .+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l-~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKV-YVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEE-EEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecC-CCcceEEECCCCCEE-EEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 47899999999999999999887776654 357889998876643 3455578999999999999998888665 89999
Q ss_pred EECCCCCEEE-EeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEE-EEEEcCCeEEEEEccCCCCCceeeEEec
Q psy16316 114 CLSPIDDTFI-SGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIF-GVGVNSDTIKLYDVRSFDKGPFSNFKFA 191 (335)
Q Consensus 114 ~~~~~~~~l~-s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~v~iwd~~~~~~~~~~~~~~~ 191 (335)
+|+|+++.|+ +++.|+.|++||+.+++....+........++++|+++.+ ++++.++.|++||+++.+ ....+.
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~--~~~~~~-- 155 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA--VINTVS-- 155 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEE--
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc--EEEEEe--
Confidence 9999999774 5567899999999998877666655556678899999866 678889999999997532 122111
Q ss_pred cCCCccceEEEEccCCCEE-EEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEe---CCCcEEEE
Q psy16316 192 AEKECDWTGIKFSADGKYI-LISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS---TDGRIHIW 267 (335)
Q Consensus 192 ~~~~~~~~~~~~s~~~~~l-~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs---~dg~v~iw 267 (335)
....+..++|+|+++++ +++..++.|++||+.++++...+.. ...+..++|+|++++|++++ .++.|++|
T Consensus 156 --~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~ 229 (391)
T 1l0q_A 156 --VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV----EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (391)
T ss_dssp --CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----SSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred --cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec----CCCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence 12345789999999988 4567789999999999987766642 33567899999999998888 68999999
Q ss_pred ECCCCeeEEEeCCCCCCCeEEEEeCCCCcEE-Eeee--ceeEEeccc
Q psy16316 268 NAEKGFKVCVLDADHPSPVQTIQFNPKFNMM-ASAC--TNLAFWIPT 311 (335)
Q Consensus 268 d~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~-~s~~--~~~~~w~~~ 311 (335)
|+.++.....+.. |. .+.+++|+|+++++ ++++ +.+++|.+.
T Consensus 230 d~~~~~~~~~~~~-~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 230 DTGTNKITARIPV-GP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp ETTTTEEEEEEEC-CS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ECCCCeEEEEEec-CC-CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 9998887777654 43 57899999999876 4543 578888763
No 119
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.1e-29 Score=222.30 Aligned_cols=244 Identities=11% Similarity=0.075 Sum_probs=196.3
Q ss_pred eeeeccCCccEEEEEECCCCC-EEEEecCCCeEEEEEc-cCCcceeeeec--ccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 14 AKLFRENTDKITSIDYSADGL-LLISCSEDDQIVIYDC-ELGTNKRTVFS--KKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
.+.+.+|.+.|+++.|+|+++ +|++|+.||+|++||+ +++.. ..+.. |...+..++|.+ .. .+++++.|+.+
T Consensus 49 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i 124 (342)
T 1yfq_A 49 LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DD--KLIAASWDGLI 124 (342)
T ss_dssp EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEE
T ss_pred ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeE
Confidence 455669999999999999999 9999999999999999 77754 55666 888899999998 33 45566789999
Q ss_pred EEEEcCC---------CceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCC-CCceeE-E--EecCCcceEEE
Q psy16316 90 RYLSLHD---------NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS-PNCQGI-M--HVSGSRPIAAF 156 (335)
Q Consensus 90 ~~~~~~~---------~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~-~~~~~~-~--~~~~~~~~~~~ 156 (335)
++||+.+ ++++..+. |...|.+++|+|++ +++++.|+.|++||+++ +..... . ........+.+
T Consensus 125 ~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~ 201 (342)
T 1yfq_A 125 EVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL 201 (342)
T ss_dssp EEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE
T ss_pred EEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEE
Confidence 9999988 77777777 89999999999976 99999999999999988 554322 1 23344567889
Q ss_pred CC-CCCEEEEEEcCCeEEEEEccCCC----CCceeeEEeccC------CCccceEEEEccCCCEEEEEeCCCeEEEEECC
Q psy16316 157 DP-EGLIFGVGVNSDTIKLYDVRSFD----KGPFSNFKFAAE------KECDWTGIKFSADGKYILISTNGSIIRTFDAY 225 (335)
Q Consensus 157 ~~-~~~~~~~~~~d~~v~iwd~~~~~----~~~~~~~~~~~~------~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~ 225 (335)
+| ++.++++++.++.+++|+++... ......+..... +...+.+++|+|++++|++++.++.|++||+.
T Consensus 202 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred CCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 99 99999999999999999997640 122233322211 13368899999999999999999999999999
Q ss_pred CCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCc-EEEEE
Q psy16316 226 NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGR-IHIWN 268 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~-v~iwd 268 (335)
+++++..+.++ |...+.+++ |++++|++|+.||. .+.|.
T Consensus 282 ~~~~~~~~~~~--h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 282 TRKKIKNFAKF--NEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp TTEEEEECCCC--SSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred cHhHhhhhhcc--cCCCceEec--CCCCeEEEEecCCccccccc
Confidence 99988887654 145567777 99999999999998 55555
No 120
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=3.5e-29 Score=222.51 Aligned_cols=248 Identities=11% Similarity=0.068 Sum_probs=191.9
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
+.+.+|.+.|+++.|+|++++|++|+.||+|++||+++++... ...|...+..++|.+..+...+++++.|+.+++||+
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 6788999999999999999999999999999999999887665 566888899999966666667778888999999999
Q ss_pred CCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE---ecCCcceEEECCCCC----EEEEEE
Q psy16316 95 HDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH---VSGSRPIAAFDPEGL----IFGVGV 167 (335)
Q Consensus 95 ~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~ 167 (335)
.+++.+..+..|. .+.++.+.+ ..++.++.|+.+++||++......... ......+..+.++.. .+++++
T Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (368)
T 3mmy_A 159 RSSNPMMVLQLPE-RCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS 235 (368)
T ss_dssp SCSSCSEEEECSS-CEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE
T ss_pred CCCcEEEEEecCC-CceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec
Confidence 9999998888765 566666654 588999999999999998754332211 112223344433332 389999
Q ss_pred cCCeEEEEEccCCCC-CceeeEEeccC---------CCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc
Q psy16316 168 NSDTIKLYDVRSFDK-GPFSNFKFAAE---------KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 237 (335)
.|+.+++||++.... .....+..... +...+.+++|+|++++|++++.|+.|++||+.+++++..+.+
T Consensus 236 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-- 313 (368)
T 3mmy_A 236 IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ-- 313 (368)
T ss_dssp TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC--
T ss_pred CCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC--
Confidence 999999999986421 11122211110 011578999999999999999999999999999998887765
Q ss_pred cCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 238 NNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 238 ~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
+...+.+++|+|++++|++|+.|+..+.|+.
T Consensus 314 -~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 314 -LDQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp -CSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred -CCCCceEEEECCCCCeEEEEecccccccccc
Confidence 4567889999999999999999986555543
No 121
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-29 Score=246.04 Aligned_cols=247 Identities=13% Similarity=0.203 Sum_probs=195.3
Q ss_pred eeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC--CCceEeeecCCCCCeEEEEECCC--CCEEEEeeCCCcEEE
Q psy16316 58 TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH--DNKYIRYFPGHTKKVNSLCLSPI--DDTFISGSYDKTVRL 133 (335)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~--~~~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~i~v 133 (335)
.+.+|...|..++|++++. .+++++.|+.|++||+. +++.+..+.+|.+.|++++|+|+ ++.|++|+.||+|++
T Consensus 4 ~l~gH~~~V~~l~~s~dg~--~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGK--RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ----CCCCEEEECCCSSSC--CEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred ecccCcceeEEEEECCCCC--eEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 3457888999999998765 45566679999999998 56778889999999999999988 899999999999999
Q ss_pred eecCCCCceeEE---EecCCcceEEECCC--CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc---
Q psy16316 134 WDLRSPNCQGIM---HVSGSRPIAAFDPE--GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA--- 205 (335)
Q Consensus 134 Wd~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--- 205 (335)
||+.+++..... .+...+..+.|+|+ +.++++|+.|++|++||++......... ...+...+.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~---~~~~~~~v~~l~~~p~~~ 158 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHAIGVNSASWAPATI 158 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE---EECCSSCEEEEEECCCC-
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE---eecCCCceEEEEecCccc
Confidence 999987632222 23455677899999 9999999999999999998743222222 223456788999999
Q ss_pred ----------CCCEEEEEeCCCeEEEEECCCCe----eeeeecccccCCCCceEEEEcCC---CcEEEEEeCCCcEEEEE
Q psy16316 206 ----------DGKYILISTNGSIIRTFDAYNGQ----CLQTLAGFLNNKGCPLEASFTPD---SKYVISGSTDGRIHIWN 268 (335)
Q Consensus 206 ----------~~~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~~~~v~~~~~sp~---~~~l~tgs~dg~v~iwd 268 (335)
++.++++++.|+.|++||++++. ....+. .|...+.+++|+|+ +++|++|+.||.|++||
T Consensus 159 ~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE---GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp --------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC---CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec---CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 58999999999999999998773 333333 45667899999999 89999999999999999
Q ss_pred CCCCee----EEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEecccc
Q psy16316 269 AEKGFK----VCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 269 ~~~~~~----~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~~ 312 (335)
..++.. .......|.+.|++++|+|++.++++++ +.+++|..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 987531 1112245889999999999999999886 5688897653
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-28 Score=225.43 Aligned_cols=246 Identities=10% Similarity=0.023 Sum_probs=190.6
Q ss_pred eeccCCccEEEEEECCCCCEE-EEecCCCeEEEEEcc--CCcceeeee--cccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 16 LFRENTDKITSIDYSADGLLL-ISCSEDDQIVIYDCE--LGTNKRTVF--SKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~g~~l-asgs~Dg~i~lwd~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
...+|.+.|++++|+|+|++| |+|+.||+|+|||+. +++....+. .+...+..++|++++.. +++++.++.++
T Consensus 97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~~~~~g~v~ 174 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT--VIIADKFGDVY 174 (450)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE--EEEEETTSEEE
T ss_pred CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE--EEEEeCCCcEE
Confidence 345788899999999999996 999999999999999 787777765 34567889999987654 44555699999
Q ss_pred EEEcCCCceEe----eecCCCCCeEEEEECCC---CCEEEEeeCCCcEEEeecCCCCceeEEE--ecCCcceEEECCCCC
Q psy16316 91 YLSLHDNKYIR----YFPGHTKKVNSLCLSPI---DDTFISGSYDKTVRLWDLRSPNCQGIMH--VSGSRPIAAFDPEGL 161 (335)
Q Consensus 91 ~~~~~~~~~~~----~~~~H~~~V~~~~~~~~---~~~l~s~s~D~~i~vWd~~~~~~~~~~~--~~~~~~~~~~~~~~~ 161 (335)
+|++.+++... .+.+|...|++++|+|+ +++|++|+.|++|++||++++.+...+. +...+..++|+ ++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~ 253 (450)
T 2vdu_B 175 SIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY 253 (450)
T ss_dssp EEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT
T ss_pred EEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC
Confidence 99998876544 78899999999999999 8999999999999999999888765532 34456678899 999
Q ss_pred EEEEEEcCCeEEEEEccCCCCCceeeEEecc----------------------CCCccceEEEEccCCCEEEEEe-CCCe
Q psy16316 162 IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA----------------------EKECDWTGIKFSADGKYILIST-NGSI 218 (335)
Q Consensus 162 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~s~~~~~l~~~~-~~~~ 218 (335)
++++++.|++|++||+++.. ....+.... .....+.+++|+|+++++++++ .++.
T Consensus 254 ~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~ 331 (450)
T 2vdu_B 254 LLLSAGGDDKIFAWDWKTGK--NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC 331 (450)
T ss_dssp EEEEEESSSEEEEEETTTCC--EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE
T ss_pred EEEEEeCCCeEEEEECCCCc--EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe
Confidence 99999999999999998643 222222110 2234567899999999999998 8999
Q ss_pred EEEEEC--CCC---eeeeeecccccCCCCceEEEEcCCCcEEEEEeC------CCcEEEEECC
Q psy16316 219 IRTFDA--YNG---QCLQTLAGFLNNKGCPLEASFTPDSKYVISGST------DGRIHIWNAE 270 (335)
Q Consensus 219 i~i~d~--~~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~------dg~v~iwd~~ 270 (335)
|++|++ .++ +.+..+.. + ..+.+++|+|++.++++++. +..|.+|.+.
T Consensus 332 i~iw~~~~~~~~~l~~~~~~~~---~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 332 IIILEMSEKQKGDLALKQIITF---P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EEEEEECSSSTTCEEEEEEEEC---S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EEEEEeccCCCCceeeccEecc---C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 999999 555 44555543 3 56889999996544444443 4558888754
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.3e-27 Score=207.02 Aligned_cols=292 Identities=11% Similarity=0.078 Sum_probs=187.6
Q ss_pred cccceeeeccCCcc----EEEEEECCCCC---EEEEecCCCeEEEEEccCC---cceeeeecccccceEEEEecCCCeeE
Q psy16316 10 SYKVAKLFRENTDK----ITSIDYSADGL---LLISCSEDDQIVIYDCELG---TNKRTVFSKKYGVDLIRFTHAKQAAI 79 (335)
Q Consensus 10 ~~~~~~~~~~h~~~----V~~v~~s~~g~---~lasgs~Dg~i~lwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (335)
.++++..|+...+. |.++-|-.-|. -+++++. .+|++|+...+ +...++..+..+|..+.+.|+....+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 102 (356)
T 2w18_A 24 NLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLV 102 (356)
T ss_dssp CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCE
T ss_pred eeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCccccee
Confidence 46677777765443 55666655443 4666665 59999999998 77788888888888888887644322
Q ss_pred E-eecCC-CCeEEEEEcCCC----ceEeeecCCCCCeEEEEECCCCCEEEEee--CCCcEEEeecCC-CCceeEE-EecC
Q psy16316 80 H-ASTKI-DDTVRYLSLHDN----KYIRYFPGHTKKVNSLCLSPIDDTFISGS--YDKTVRLWDLRS-PNCQGIM-HVSG 149 (335)
Q Consensus 80 ~-~~~~~-d~~i~~~~~~~~----~~~~~~~~H~~~V~~~~~~~~~~~l~s~s--~D~~i~vWd~~~-~~~~~~~-~~~~ 149 (335)
. +.+-. .+.++..-+... +....-.+|...|.++ ++++++.+++ .|+.|++|++.. ++..... .+..
T Consensus 103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~ 179 (356)
T 2w18_A 103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPP 179 (356)
T ss_dssp EEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCC
T ss_pred eeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCC
Confidence 2 11111 111111111111 1122223455556554 5555555533 599999999954 5544432 3445
Q ss_pred CcceEEECC---CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEE------------EEEe
Q psy16316 150 SRPIAAFDP---EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYI------------LIST 214 (335)
Q Consensus 150 ~~~~~~~~~---~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l------------~~~~ 214 (335)
...+++|++ ++.++++++.|++|+|||+.+.+ ....+.........+.+++|+|+|.++ ++++
T Consensus 180 ~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk--~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 180 EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ--LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC--EEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc--EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 566778888 77999999999999999998643 233332111123345678999999887 4567
Q ss_pred CCCeEEEEECCCCeeeeeecc--cccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeE-EEEe
Q psy16316 215 NGSIIRTFDAYNGQCLQTLAG--FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQ-TIQF 291 (335)
Q Consensus 215 ~~~~i~i~d~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~-~v~~ 291 (335)
.|++|++||..+++++..+.- ..++...+. ..+.++.++|+|+.|++|+|||+.++.....+. +|...+. .++|
T Consensus 258 ~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~-gH~~~vvs~vaf 334 (356)
T 2w18_A 258 PVFQLIVINPKTTLSVGVMLYCLPPGQAGRFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTALLP-PVSDQHWSFVKW 334 (356)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCCTTCCCCEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEEEC-CC--CCCCEEEE
T ss_pred CCcEEEEEECCCCEEEEEEEeeccCCCcceeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEEec-CCCCCeEEEEEE
Confidence 789999999999988765521 112222233 333447899999999999999999999888885 5766555 6899
Q ss_pred CCCCcEEEeee--ceeEEecc
Q psy16316 292 NPKFNMMASAC--TNLAFWIP 310 (335)
Q Consensus 292 sp~~~~~~s~~--~~~~~w~~ 310 (335)
||+|++|+||+ ++|++|.+
T Consensus 335 SPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 335 SGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEecC
Confidence 99999999997 57999963
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=2.9e-27 Score=215.63 Aligned_cols=243 Identities=14% Similarity=0.178 Sum_probs=198.9
Q ss_pred eeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC
Q psy16316 16 LFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 16 ~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 95 (335)
.+.+|.+.|.++.|+|+|.++++++.|++|++||+++++....+..+...+..++|.+++... ++++..|+.+++||+.
T Consensus 164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~i~~~d~~ 242 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLV-YCSNWISEDISVIDRK 242 (433)
T ss_dssp HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEE-EEEETTTTEEEEEETT
T ss_pred cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEE-EEEecCCCcEEEEECC
Confidence 456899999999999999999999999999999999998888877777889999999876644 3455568999999999
Q ss_pred CCceEeeecCCCCCeEEEEECCCCCEEEEee--------CCCcEEEeecCCCCceeEEEecCCcceEEECCCCC-EEEEE
Q psy16316 96 DNKYIRYFPGHTKKVNSLCLSPIDDTFISGS--------YDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGL-IFGVG 166 (335)
Q Consensus 96 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s--------~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 166 (335)
+++.+..+..+ ..+.+++|+|+++.|++++ .|+.|++||+++++.............++++|+++ +++++
T Consensus 243 ~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 321 (433)
T 3bws_A 243 TKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSD 321 (433)
T ss_dssp TTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEE
T ss_pred CCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEe
Confidence 99988888765 4589999999999999988 58999999999887666554444555678999996 55677
Q ss_pred EcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC---------------CCeEEEEECCCCeeee
Q psy16316 167 VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN---------------GSIIRTFDAYNGQCLQ 231 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---------------~~~i~i~d~~~~~~~~ 231 (335)
+.++.+++||+++.. ....+ .....+.+++|+|+++++++++. |+.|++||+.+++...
T Consensus 322 ~~~~~v~v~d~~~~~--~~~~~----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 322 MCCSKIEVYDLKEKK--VQKSI----PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE 395 (433)
T ss_dssp TTTTEEEEEETTTTE--EEEEE----ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred cCCCEEEEEECCCCc--EEEEe----cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE
Confidence 899999999997532 12222 12345678999999999988876 4699999999998887
Q ss_pred eecccccCCCCceEEEEcCCCcEEEEEeC-CCcEEEEECC
Q psy16316 232 TLAGFLNNKGCPLEASFTPDSKYVISGST-DGRIHIWNAE 270 (335)
Q Consensus 232 ~~~~~~~~~~~v~~~~~sp~~~~l~tgs~-dg~v~iwd~~ 270 (335)
.+.. ...+..++|+|++++|++++. |+.|++|++.
T Consensus 396 ~~~~----~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 396 FWEA----GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEC----SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EecC----CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 7654 235788999999999988775 9999999975
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.3e-28 Score=214.96 Aligned_cols=223 Identities=11% Similarity=0.083 Sum_probs=170.3
Q ss_pred CeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecC---------CCCceeEEE
Q psy16316 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLR---------SPNCQGIMH 146 (335)
Q Consensus 76 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~---------~~~~~~~~~ 146 (335)
+..++++++.|++|++||+.+++.+..+. ...|.++.++|+ +++++.|++|++|+.. +++......
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 45677888899999999999999888776 577889999997 9999999999999765 333333332
Q ss_pred ec--CCcceEEECC--CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEE
Q psy16316 147 VS--GSRPIAAFDP--EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTF 222 (335)
Q Consensus 147 ~~--~~~~~~~~~~--~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~ 222 (335)
.. ..+..+.++| ++.++++++.|++|++||++.... . .. ........+.+++|+|++.+|++++.|+.|++|
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~-~~-~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ--Y-IV-HSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE--E-EE-ECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE--E-EE-EecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 22 3466788999 999999999999999999986431 1 11 112334457899999999999999999999999
Q ss_pred ECCCCeee-eeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC--CCCCCeE--EEEeCCCCcE
Q psy16316 223 DAYNGQCL-QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA--DHPSPVQ--TIQFNPKFNM 297 (335)
Q Consensus 223 d~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~--~h~~~v~--~v~~sp~~~~ 297 (335)
|+++++.. ..+.. .|...+.+++|+|++.+|++++.+ .|++||+.++.....+.. .|..++. +++|+|++++
T Consensus 198 d~~~~~~~~~~~~~--~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 274 (343)
T 3lrv_A 198 NLSSPDQASSRFPV--DEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN 274 (343)
T ss_dssp ESSCTTSCCEECCC--CTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred ECCCCCCCccEEec--cCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence 99999876 55544 245678999999999999999954 999999987754432221 1334444 6999999999
Q ss_pred EEe--e-eceeEEecc
Q psy16316 298 MAS--A-CTNLAFWIP 310 (335)
Q Consensus 298 ~~s--~-~~~~~~w~~ 310 (335)
+++ + ++.+++|..
T Consensus 275 l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 275 MIAYSNESNSLTIYKF 290 (343)
T ss_dssp EEEEETTTTEEEEEEE
T ss_pred EEEecCCCCcEEEEEE
Confidence 999 4 567999975
No 126
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.2e-26 Score=206.84 Aligned_cols=245 Identities=12% Similarity=0.036 Sum_probs=172.5
Q ss_pred EEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEE-EEe
Q psy16316 47 IYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF-ISG 125 (335)
Q Consensus 47 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~ 125 (335)
||++.+...+.....|...|.+++|++++. .+++++ ++.+++|++.+.+....... ..+..+++.++++.+ +++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~--~la~g~-~~~~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 77 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQS--CLILST-LKSFEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVT 77 (355)
T ss_dssp ----------------CCCCCEEEECTTSS--EEEEEC-SSEEEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEEC
T ss_pred cccccccCCccccccCCCceEEEEECCCCC--EEEEEc-CCEEEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEE
Confidence 566666666666677888999999999876 344444 45689999988766654432 357788888888776 678
Q ss_pred eCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc
Q psy16316 126 SYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA 205 (335)
Q Consensus 126 s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 205 (335)
+.|++|++||+.++++...+.....+..+.++++. ++++ .++.+++||+..... ....+.. ....+++++
T Consensus 78 ~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~-~~~~~~~------~~~~~~~s~ 147 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWK-RITDDIR------FGGVCEFSN 147 (355)
T ss_dssp SSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCC-BSSCCEE------EEEEEEEET
T ss_pred CCccEEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCce-eeEEecc------CCceEEEEc
Confidence 88999999999998887776666555666777654 4444 478999999986411 1111111 223456777
Q ss_pred CCCEEEE--EeCCCeEEEEECCCCe----------------eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCc-EEE
Q psy16316 206 DGKYILI--STNGSIIRTFDAYNGQ----------------CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGR-IHI 266 (335)
Q Consensus 206 ~~~~l~~--~~~~~~i~i~d~~~~~----------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~-v~i 266 (335)
.++++ ++.++.|++||+.+++ +...+. .|...|.+++|+|++++||+|+.|++ |++
T Consensus 148 --~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~---~h~~~v~~~~~s~~g~~l~s~s~d~~~v~i 222 (355)
T 3vu4_A 148 --GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK---AHTNPIKMVRLNRKSDMVATCSQDGTIIRV 222 (355)
T ss_dssp --TEEEEEESSCTTCEEEEECCC------------------CCEEEC---CCSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred --cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE---ccCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence 66666 4788999999999865 134444 45677899999999999999999999 999
Q ss_pred EECCCCeeEEEeCCC-CCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 267 WNAEKGFKVCVLDAD-HPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 267 wd~~~~~~~~~~~~~-h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
||+.++..+..+..+ |.++|++++|+|+++++++++ +.+++|.+.
T Consensus 223 wd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 223 FKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp EETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred EECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence 999999888877644 999999999999999999997 569999764
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=5.7e-27 Score=213.21 Aligned_cols=270 Identities=13% Similarity=0.122 Sum_probs=196.2
Q ss_pred CCccEEEEEECCCCC-EEEEec----CCC----eEEEEEc--cCCcce--eeeecccccceEEEEec-------------
Q psy16316 20 NTDKITSIDYSADGL-LLISCS----EDD----QIVIYDC--ELGTNK--RTVFSKKYGVDLIRFTH------------- 73 (335)
Q Consensus 20 h~~~V~~v~~s~~g~-~lasgs----~Dg----~i~lwd~--~~~~~~--~~~~~~~~~~~~~~~~~------------- 73 (335)
+...|....|++.|. ++++|+ .|| +++|||+ .+++.+ ..+.++...+..+++.+
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 345788888988885 676887 468 9999999 888866 33555555554444432
Q ss_pred -CCCeeEEeecC-CC---CeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCC---cEEEeecCCCCceeEE
Q psy16316 74 -AKQAAIHASTK-ID---DTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDK---TVRLWDLRSPNCQGIM 145 (335)
Q Consensus 74 -~~~~~~~~~~~-~d---~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~---~i~vWd~~~~~~~~~~ 145 (335)
.....++++.. .+ +.|++||+.. ...+.+.+|...|.+++|+|+|+.|++++.|+ .|++||+.++++....
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~ 219 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA 219 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee
Confidence 12222232221 23 7999999975 45677788999999999999999999999886 9999999998876555
Q ss_pred EecCCcceEEECCCCCEEE-EEEcCC--eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-C--eE
Q psy16316 146 HVSGSRPIAAFDPEGLIFG-VGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-S--II 219 (335)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~-~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-~--~i 219 (335)
...+......|+|+|+.++ +++.++ .|.+||+.+.. .. ....+...+.+++|+|+|++|+.++.+ + .|
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~---~~---~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IR---QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---EE---ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC---EE---eCcCCCCcccceEECCCCCEEEEEECCCCCcEE
Confidence 4555566789999999777 555554 59999987532 11 222334456789999999999988763 4 68
Q ss_pred EEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC---CcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc
Q psy16316 220 RTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD---GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296 (335)
Q Consensus 220 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d---g~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 296 (335)
++||+.+++.. .+.. +...+..++|+|+|++|++++.+ ..|++||..++... .+. .|. .+..++|+|+|+
T Consensus 294 ~~~d~~~~~~~-~l~~---~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~-~~~-~~~~~~~spdg~ 366 (415)
T 2hqs_A 294 YKVNINGGAPQ-RITW---EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS-STF-LDETPSLAPNGT 366 (415)
T ss_dssp EEEETTSSCCE-ECCC---SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC-CSS-SCEEEEECTTSS
T ss_pred EEEECCCCCEE-EEec---CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec-CCC-CcCCeEEcCCCC
Confidence 88899887643 3322 23456789999999999988865 58999999887654 343 343 899999999999
Q ss_pred EEEeeec
Q psy16316 297 MMASACT 303 (335)
Q Consensus 297 ~~~s~~~ 303 (335)
++++++.
T Consensus 367 ~l~~~s~ 373 (415)
T 2hqs_A 367 MVIYSSS 373 (415)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 9887763
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=9.2e-26 Score=205.23 Aligned_cols=267 Identities=12% Similarity=0.116 Sum_probs=198.1
Q ss_pred eeeccCCccEEEEEECC--------------CCCEEEEecCC------CeEEEEEccCCcceeeeecccccceEEEEecC
Q psy16316 15 KLFRENTDKITSIDYSA--------------DGLLLISCSED------DQIVIYDCELGTNKRTVFSKKYGVDLIRFTHA 74 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~--------------~g~~lasgs~D------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (335)
..|.+|...+..+++++ .+..++.++.+ ++|++||++ +...+.+..+...+..++|+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spd 189 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPD 189 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCC
Confidence 45778888887777764 26667666654 799999997 4556677778888999999998
Q ss_pred CCeeEEeecC-CCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEE-EeeCCCc--EEEeecCCCCceeEEEecCC
Q psy16316 75 KQAAIHASTK-IDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKT--VRLWDLRSPNCQGIMHVSGS 150 (335)
Q Consensus 75 ~~~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D~~--i~vWd~~~~~~~~~~~~~~~ 150 (335)
+...+.++.. .+..+++||+.+++.. .+.+|...+.+++|+|+|+.|+ +++.|+. |++||+.+++..........
T Consensus 190 g~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~ 268 (415)
T 2hqs_A 190 GSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSN 268 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSC
T ss_pred CCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCc
Confidence 7755444321 1259999999988765 4667888999999999999777 7776665 99999988776443333444
Q ss_pred cceEEECCCCCEEEEEEc-CC--eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC---CeEEEEEC
Q psy16316 151 RPIAAFDPEGLIFGVGVN-SD--TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG---SIIRTFDA 224 (335)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~---~~i~i~d~ 224 (335)
.....|+|+|+.++.++. ++ .|.+||+.... ...+ ......+..++|+|+|++|++++.+ ..|++||+
T Consensus 269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~---~~~l---~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~ 342 (415)
T 2hqs_A 269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA---PQRI---TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 342 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---CEEC---CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred ccceEECCCCCEEEEEECCCCCcEEEEEECCCCC---EEEE---ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence 566789999998888776 44 67777876532 1111 1222345679999999999987754 57999999
Q ss_pred CCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC---cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc
Q psy16316 225 YNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG---RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296 (335)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg---~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 296 (335)
.+++.. .+..+ ..+..++|+|||++|++++.++ .|++||+.. .....+ ..|.+.|.+++|+|.-+
T Consensus 343 ~~~~~~-~l~~~----~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-~~~~~l-~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 343 ATGGVQ-VLSST----FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARL-PATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TTCCEE-ECCCS----SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS-CCEEEC-CCSSSEEEEEEECCCCC
T ss_pred CCCCEE-EecCC----CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC-CcEEEe-eCCCCCCcCCccccccc
Confidence 988763 34332 2577899999999999998877 799999864 444455 45889999999999754
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=3.8e-25 Score=215.25 Aligned_cols=282 Identities=12% Similarity=0.083 Sum_probs=206.4
Q ss_pred CccEEEEEECCCCCEEEEecC-CC-----eEEEEEccCCcceeeeecccc------------------------cceEEE
Q psy16316 21 TDKITSIDYSADGLLLISCSE-DD-----QIVIYDCELGTNKRTVFSKKY------------------------GVDLIR 70 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~-Dg-----~i~lwd~~~~~~~~~~~~~~~------------------------~~~~~~ 70 (335)
.+.|.+++|||||++|++++. |+ +|++||+++++.......+.. .+..++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 567999999999999999998 88 999999999876655544332 377889
Q ss_pred EecCCCeeEEeecCCCCeEEEEEcCCCc--eEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec
Q psy16316 71 FTHAKQAAIHASTKIDDTVRYLSLHDNK--YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS 148 (335)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~ 148 (335)
|++++...++++. +.+.+||+.++. .++.+..|...+.+++|+|+|+.|+.++ ++.|++||+.+++...+....
T Consensus 116 ~SpDg~~l~~~~~---~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 116 WSPDAQRLLFPLG---GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp ECTTSSEEEEEET---TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred ECCCCCEEEEEeC---CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCC
Confidence 9998876665553 899999999873 4555777888999999999999999987 569999999886554332211
Q ss_pred CC-----------------cceEEECCCCCEEEEEEcCC---------------------------------eEEEEEcc
Q psy16316 149 GS-----------------RPIAAFDPEGLIFGVGVNSD---------------------------------TIKLYDVR 178 (335)
Q Consensus 149 ~~-----------------~~~~~~~~~~~~~~~~~~d~---------------------------------~v~iwd~~ 178 (335)
.. ...+.|+|+|+.+++++.++ .|.+||+.
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 11 24578999999888887655 78888886
Q ss_pred C-CCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-----CCeEEEEECCCCeeeeeecccccC-CCCceEEEEcCC
Q psy16316 179 S-FDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-----GSIIRTFDAYNGQCLQTLAGFLNN-KGCPLEASFTPD 251 (335)
Q Consensus 179 ~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-----~~~i~i~d~~~~~~~~~~~~~~~~-~~~v~~~~~sp~ 251 (335)
+ ... ........+...+..++| |||++|+++.. +..|++||+.++++...+..+... ...+..++|+||
T Consensus 272 ~~~~~---~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd 347 (741)
T 2ecf_A 272 EQAQT---QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD 347 (741)
T ss_dssp TTCCC---EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred CCCce---EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence 5 331 111111123445678999 99999987653 467999999999876665543221 112346899999
Q ss_pred CcEEEEEeCCCcEEEEECC-CCeeEEEeCCCCCCCeEEE-EeCCCCcEEEee-e--c--eeEEecccc
Q psy16316 252 SKYVISGSTDGRIHIWNAE-KGFKVCVLDADHPSPVQTI-QFNPKFNMMASA-C--T--NLAFWIPTY 312 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iwd~~-~~~~~~~~~~~h~~~v~~v-~~sp~~~~~~s~-~--~--~~~~w~~~~ 312 (335)
|+++++++.||.++||... ++. ...+ ..|...|..+ +|+|+++.++.. . + .+++|..+.
T Consensus 348 g~~~~~~~~~g~~~l~~~~~~~~-~~~l-~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 348 GSILWSSERTGFQHLYRIDSKGK-AAAL-THGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp SCEEEEECTTSSCEEEEECSSSC-EEES-CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CeEEEEecCCCccEEEEEcCCCC-eeee-eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 9999999999988888765 333 4444 3467788887 599999866543 2 2 688997653
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=5.3e-24 Score=199.77 Aligned_cols=291 Identities=13% Similarity=0.075 Sum_probs=211.4
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEc--cCCcceeeeecccccceEEEEec----CCCeeEEeec
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDC--ELGTNKRTVFSKKYGVDLIRFTH----AKQAAIHAST 83 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 83 (335)
..++.+++..+.. +.++.|+|||++|++++.|++|++||+ .+++....+.. ...+..++|++ ++...+. +.
T Consensus 168 t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v-~~ 244 (543)
T 1nir_A 168 SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIA-GA 244 (543)
T ss_dssp TCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEE-EE
T ss_pred CceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEE-EE
Confidence 3556677773333 899999999999999999999999999 78877776653 44568889988 7665433 33
Q ss_pred CCCCeEEEEEcCCCceEeeecC----------CCC-CeEEEEECCCCC-EEEEeeCCCcEEEeecCCCCcee--EEEecC
Q psy16316 84 KIDDTVRYLSLHDNKYIRYFPG----------HTK-KVNSLCLSPIDD-TFISGSYDKTVRLWDLRSPNCQG--IMHVSG 149 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~~~----------H~~-~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~--~~~~~~ 149 (335)
..+++|.+||..++++++.+.. |.. .+.++.++|++. ++++...+++|.+||..+.+... .+....
T Consensus 245 ~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~ 324 (543)
T 1nir_A 245 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP 324 (543)
T ss_dssp EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCS
T ss_pred ccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCc
Confidence 3589999999999999888765 333 789999999765 67788889999999998766544 222223
Q ss_pred CcceEEECCCCCEEEEE-EcCCeEEEEEccCCCCCceeeEEec-cCCCccceEEE-EccC-CCEEEEEe-CCCeEEEEEC
Q psy16316 150 SRPIAAFDPEGLIFGVG-VNSDTIKLYDVRSFDKGPFSNFKFA-AEKECDWTGIK-FSAD-GKYILIST-NGSIIRTFDA 224 (335)
Q Consensus 150 ~~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~-~s~~-~~~l~~~~-~~~~i~i~d~ 224 (335)
....+.|+|+++++.++ ..+++|.+||..+.+ ....+... ..+.. .... ++|+ +..++++. .+++|.+||+
T Consensus 325 ~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~--l~~~i~~g~~ph~g--~g~~~~~p~~g~~~~s~~~~d~~V~v~d~ 400 (543)
T 1nir_A 325 FLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR--LSALVDVGKTPHPG--RGANFVHPKYGPVWSTSHLGDGSISLIGT 400 (543)
T ss_dssp SCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE--EEEEEECSSSBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEEC
T ss_pred CccCceECCCCCEEEEEecCCCeEEEEECCCCe--EEEeeccCCCCCCC--CCcccCCCCCccEEEeccCCCceEEEEEe
Confidence 33457899999976655 468899999998632 12222211 01111 1222 4777 55555554 5789999999
Q ss_pred CC-------CeeeeeecccccCCCCceEEEEcCCCcEEEEEe-------CCCcEEEEECCCCeeE-EEeC-------CCC
Q psy16316 225 YN-------GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS-------TDGRIHIWNAEKGFKV-CVLD-------ADH 282 (335)
Q Consensus 225 ~~-------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs-------~dg~v~iwd~~~~~~~-~~~~-------~~h 282 (335)
.+ +++++++.++. ..+..++|||++++|++++ .+++|.+||..++... ..++ ..+
T Consensus 401 ~~~~~~~~~~~~v~~l~~~g---~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~ 477 (543)
T 1nir_A 401 DPKNHPQYAWKKVAELQGQG---GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG 477 (543)
T ss_dssp CTTTCTTTBTSEEEEEECSC---SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS
T ss_pred CCCCCchhcCeEEEEEEcCC---CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC
Confidence 88 88888887643 3356699999999999987 3779999999987655 3331 245
Q ss_pred CCCeEEEEeCCCCcEEEee-------eceeEEecc
Q psy16316 283 PSPVQTIQFNPKFNMMASA-------CTNLAFWIP 310 (335)
Q Consensus 283 ~~~v~~v~~sp~~~~~~s~-------~~~~~~w~~ 310 (335)
...+..++|+|+|..+..+ ++.|.+|..
T Consensus 478 ~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 478 AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp CCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred CCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 7789999999999887744 256888865
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=3.1e-24 Score=188.64 Aligned_cols=276 Identities=10% Similarity=0.093 Sum_probs=196.4
Q ss_pred EECCCCC-EEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCce-EeeecC
Q psy16316 28 DYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY-IRYFPG 105 (335)
Q Consensus 28 ~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~ 105 (335)
.|.+++. .+++++.+++|++||.++++....+..+.... .++|++++...+ +++..++.+.+||+.+++. ...+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~-~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVV-VTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEE-EEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEE-EEeCCCCeEEEEECCCCceeEEeccc
Confidence 4566655 58889999999999999998877766554455 888988876444 4444578999999999887 777777
Q ss_pred CCCCeEEEEECCCCCEEEEeeCCC---cEEEeecCCCCceeEEEecCCcceEEECCCCC-EEEEEEcCCe-EEEEEccCC
Q psy16316 106 HTKKVNSLCLSPIDDTFISGSYDK---TVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGL-IFGVGVNSDT-IKLYDVRSF 180 (335)
Q Consensus 106 H~~~V~~~~~~~~~~~l~s~s~D~---~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~-v~iwd~~~~ 180 (335)
+..+..+++|+|++++|+++..++ .|++||+.+++....+........++++|+|+ +++++..++. +.+|++...
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence 777776699999999998655553 89999999887766665555556789999997 5555566678 999998742
Q ss_pred CCCceeeE-EeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCee---eeeecccccCCCCceEEEEcCCCcEE
Q psy16316 181 DKGPFSNF-KFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQC---LQTLAGFLNNKGCPLEASFTPDSKYV 255 (335)
Q Consensus 181 ~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l 255 (335)
. ..... ............++|+|+|++++++. .++.|++||+.+++. +..+.. ...+..++|+|||++|
T Consensus 162 g--~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~~~~~spdg~~l 235 (331)
T 3u4y_A 162 G--VLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT----NNLPGTIVVSRDGSTV 235 (331)
T ss_dssp C--CEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC----SSCCCCEEECTTSSEE
T ss_pred C--cEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC----CCCCceEEECCCCCEE
Confidence 2 11111 11112223457899999999776655 578999999998887 555542 2446679999999976
Q ss_pred EEEe-CCCcEEEEECCCCee--EEEeCCC---CCC---CeEEEEeCCCCcEEEeee---ceeEEeccc
Q psy16316 256 ISGS-TDGRIHIWNAEKGFK--VCVLDAD---HPS---PVQTIQFNPKFNMMASAC---TNLAFWIPT 311 (335)
Q Consensus 256 ~tgs-~dg~v~iwd~~~~~~--~~~~~~~---h~~---~v~~v~~sp~~~~~~s~~---~~~~~w~~~ 311 (335)
+.++ .++.|.+||..++.. ...+... ++. ....++|+|++++++.++ +.+.+|...
T Consensus 236 ~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 236 YVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp EEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 5554 578899999988765 2222211 122 235589999999776543 468999763
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=3.5e-24 Score=200.95 Aligned_cols=274 Identities=13% Similarity=0.121 Sum_probs=206.9
Q ss_pred EECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEc--CCCceEeeecC
Q psy16316 28 DYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL--HDNKYIRYFPG 105 (335)
Q Consensus 28 ~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~--~~~~~~~~~~~ 105 (335)
.|+|++.++++++.|++|.+||..+++....+..... +..++|++++...+.++ .|++|++||+ .+++.+..++.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~--~d~~V~v~D~~~~t~~~~~~i~~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIG--RDARIDMIDLWAKEPTKVAEIKI 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEE--TTSEEEEEETTSSSCEEEEEEEC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEEC--CCCeEEEEECcCCCCcEEEEEec
Confidence 3899999999999999999999999998887764333 77888998877655444 5699999999 88888888874
Q ss_pred CCCCeEEEEECC----CCCEEEEeeC-CCcEEEeecCCCCceeEEEecC------------CcceEEECCCCC-EEEEEE
Q psy16316 106 HTKKVNSLCLSP----IDDTFISGSY-DKTVRLWDLRSPNCQGIMHVSG------------SRPIAAFDPEGL-IFGVGV 167 (335)
Q Consensus 106 H~~~V~~~~~~~----~~~~l~s~s~-D~~i~vWd~~~~~~~~~~~~~~------------~~~~~~~~~~~~-~~~~~~ 167 (335)
...+..++|+| +|++|++++. |++|.+||..+.++...+...+ ....+.++|++. ++++..
T Consensus 221 -g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 221 -GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp -CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred -CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 45679999999 9999998884 8999999999988776654311 233567888665 455666
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeeccc-ccCCCCceE
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAGF-LNNKGCPLE 245 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~ 245 (335)
.+++|.+||+..........+. .......++|+|++++++++. .++.|.+||+.++++...+... ..|......
T Consensus 300 ~~g~i~vvd~~~~~~l~~~~i~----~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~ 375 (543)
T 1nir_A 300 ETGKVLLVNYKDIDNLTVTSIG----AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN 375 (543)
T ss_dssp TTTEEEEEECTTSSSCEEEEEE----CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE
T ss_pred CCCeEEEEEecCCCcceeEEec----cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc
Confidence 7899999999764321111111 122345689999999887665 5789999999999988877632 112222222
Q ss_pred EEEcCC-CcEEEEEe-CCCcEEEEECCC-------CeeEEEeCCCCCCCeEEEEeCCCCcEEEeee---------ceeEE
Q psy16316 246 ASFTPD-SKYVISGS-TDGRIHIWNAEK-------GFKVCVLDADHPSPVQTIQFNPKFNMMASAC---------TNLAF 307 (335)
Q Consensus 246 ~~~sp~-~~~l~tgs-~dg~v~iwd~~~-------~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~---------~~~~~ 307 (335)
+ ++|+ +..+++++ .|++|.+||..+ +..+..+. .|.+.+..++|||+++.|.++. .+|.+
T Consensus 376 ~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~-~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v 453 (543)
T 1nir_A 376 F-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ-GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV 453 (543)
T ss_dssp E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE-CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEE
T ss_pred c-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE-cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEE
Confidence 2 5787 67788886 689999999987 66777775 4778888999999999999874 47899
Q ss_pred eccc
Q psy16316 308 WIPT 311 (335)
Q Consensus 308 w~~~ 311 (335)
|...
T Consensus 454 ~d~~ 457 (543)
T 1nir_A 454 FDLK 457 (543)
T ss_dssp EETT
T ss_pred EECC
Confidence 9764
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=4.1e-23 Score=182.76 Aligned_cols=272 Identities=13% Similarity=0.107 Sum_probs=204.0
Q ss_pred CCccEEEEEECCCCCEEEEecC-------CCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 20 NTDKITSIDYSADGLLLISCSE-------DDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~-------Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
....+..+.|+|+|+++++++. +++|.+||.++++....+.. ...+..+++++++...+ ++...++.+.+|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~-v~~~~~~~v~~~ 116 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLW-FGNTVNSAVTAI 116 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEE-EEETTTTEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEE-EEecCCCEEEEE
Confidence 3456889999999998887774 67899999999987776644 33467788888776544 444567899999
Q ss_pred EcCCCceEeeecCCCCC---------eEEEEECCCCCEEEEee--CCCcEEEeecCCCCceeEEE-ecCCcceEEECCCC
Q psy16316 93 SLHDNKYIRYFPGHTKK---------VNSLCLSPIDDTFISGS--YDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEG 160 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~---------V~~~~~~~~~~~l~s~s--~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~ 160 (335)
|+.+++.+..+..+... +.+++|+|+++.++.++ .++.|.+||+.+++....+. .......+.++|++
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 99999988887765432 78999999998777665 48899999999887766554 33334567899999
Q ss_pred CEEEEEEcCCeEEEEEccCCCCCceeeEEecc-CCCccceEEEEccCCCEEEEEeCC-CeEEEEECCCCeeeeeeccccc
Q psy16316 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA-EKECDWTGIKFSADGKYILISTNG-SIIRTFDAYNGQCLQTLAGFLN 238 (335)
Q Consensus 161 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~~-~~i~i~d~~~~~~~~~~~~~~~ 238 (335)
+.++++..++.+.+||+.+.. ......... .....+.+++|+|++++++++..+ +.|.+||+.+++....+...
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-- 272 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADNK--ILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP-- 272 (353)
T ss_dssp TEEEEECTTSEEEEEETTTTE--EEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS--
T ss_pred CEEEEEcCCCeEEEEECCCCe--EEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC--
Confidence 999999899999999987532 122222211 123345679999999988777654 89999999999887766532
Q ss_pred CCCCceEEEEcCCCcEE-EEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee
Q psy16316 239 NKGCPLEASFTPDSKYV-ISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 239 ~~~~v~~~~~sp~~~~l-~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
....++|+|+++++ ++...++.|.+||..++.....+.. ......++|+|+++++..+.
T Consensus 273 ---~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~ 332 (353)
T 3vgz_A 273 ---ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT--PTHPNSLALSADGKTLYVSV 332 (353)
T ss_dssp ---SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC--CSEEEEEEECTTSCEEEEEE
T ss_pred ---CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec--CCCCCeEEEcCCCCEEEEEE
Confidence 13468999999955 4555789999999998887776653 34678999999998655553
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=1.7e-23 Score=184.16 Aligned_cols=277 Identities=13% Similarity=0.122 Sum_probs=183.0
Q ss_pred CCEEEEecCCCeEEEEEccC-Ccc-eeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC--CCc--eEeeecCC
Q psy16316 33 GLLLISCSEDDQIVIYDCEL-GTN-KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH--DNK--YIRYFPGH 106 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~--~~~--~~~~~~~H 106 (335)
..++++++.|+.|++||++. +.. ......+...+..++|++++...+.+. ..++.+.+|++. +++ .+..+..+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGV-RPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEE-TTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEee-cCCCeEEEEEecCCCCceeeccccccC
Confidence 34566668899999999963 321 122234556788899998876544433 335899999997 444 33455544
Q ss_pred CCCeEEEEECCCCCEEEEee-CCCcEEEeecCCC---CceeEEEecCCcceEEECCCCCEEEEEE-cCCeEEEEEccCCC
Q psy16316 107 TKKVNSLCLSPIDDTFISGS-YDKTVRLWDLRSP---NCQGIMHVSGSRPIAAFDPEGLIFGVGV-NSDTIKLYDVRSFD 181 (335)
Q Consensus 107 ~~~V~~~~~~~~~~~l~s~s-~D~~i~vWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~ 181 (335)
. .+.+++|+|+++.|+.++ .++.|++||+..+ ..............+.++|+++.++++. .++.|.+||+....
T Consensus 84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence 4 788999999999776665 4899999999522 2222222233345678999998777776 88999999997521
Q ss_pred CCceeeE---EeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCC--Cee--eeeecccc---cCCCCceEEEEcC
Q psy16316 182 KGPFSNF---KFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYN--GQC--LQTLAGFL---NNKGCPLEASFTP 250 (335)
Q Consensus 182 ~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~--~~~--~~~~~~~~---~~~~~v~~~~~sp 250 (335)
..... ............++|+|+++++++++ .++.|++|++.. ++. ...+.... .....+..++|+|
T Consensus 163 --~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 240 (343)
T 1ri6_A 163 --HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP 240 (343)
T ss_dssp --CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred --ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC
Confidence 12111 11122223457799999999877665 788999999953 332 22222111 1123456799999
Q ss_pred CCcEEE-EEeCCCcEEEEECC--CC--eeEEEeCCCCCCCeEEEEeCCCCcEEEeee---ceeEEeccccccc
Q psy16316 251 DSKYVI-SGSTDGRIHIWNAE--KG--FKVCVLDADHPSPVQTIQFNPKFNMMASAC---TNLAFWIPTYLSN 315 (335)
Q Consensus 251 ~~~~l~-tgs~dg~v~iwd~~--~~--~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~---~~~~~w~~~~~~~ 315 (335)
++++|+ ++..++.|++|++. .+ .....+.. +. .+..++|+|++++++.++ +.+.+|..+...+
T Consensus 241 dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g 311 (343)
T 1ri6_A 241 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT-ET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQG 311 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-SS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTT
T ss_pred CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC-CC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCc
Confidence 998776 55579999999997 22 33333432 33 378999999999777665 5699997665443
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=8.1e-24 Score=181.88 Aligned_cols=254 Identities=13% Similarity=0.157 Sum_probs=184.8
Q ss_pred EecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC-CceEeeecCCC-CCeEEEEE
Q psy16316 38 SCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD-NKYIRYFPGHT-KKVNSLCL 115 (335)
Q Consensus 38 sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~H~-~~V~~~~~ 115 (335)
+++.|++|++||+.+++.. .+..+...+..++|++++...+.. .++.+.+||+.+ ++....+.+|. ..|.+++|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLN---SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEE---ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEE---cCCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 5678999999999888755 455577789999999987754443 278999999999 88877777764 78899999
Q ss_pred CCCCCEEEEee--CCCcEEEeec--CCCCceeEEEecCCcceEEECCCCCEEE-EEEcCCeEEEEEccCCCCCceeeEEe
Q psy16316 116 SPIDDTFISGS--YDKTVRLWDL--RSPNCQGIMHVSGSRPIAAFDPEGLIFG-VGVNSDTIKLYDVRSFDKGPFSNFKF 190 (335)
Q Consensus 116 ~~~~~~l~s~s--~D~~i~vWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~v~iwd~~~~~~~~~~~~~~ 190 (335)
+|+++.|++++ .|+..++|.+ .++... .+........+.|+|+++.++ ++..++.+++|+++.... .. ..
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~-~~---~~ 167 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGGTPR-LMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG-VE---TR 167 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCCCCE-ECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC-CE---EE
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCCceE-EeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC-cc---eE
Confidence 99999999998 4456666655 444322 222222345568999999776 777889999999754221 11 12
Q ss_pred ccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECC-CCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC-------
Q psy16316 191 AAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAY-NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD------- 261 (335)
Q Consensus 191 ~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d------- 261 (335)
.......+..++|+|++++++.++ .++.+++|++. .+.....+.. +...+..++|+|++++|++++.+
T Consensus 168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 244 (297)
T 2ojh_A 168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD---SAYGDWFPHPSPSGDKVVFVSYDADVFDHP 244 (297)
T ss_dssp CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC---CSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec---CCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence 223344568899999999888766 47888888875 4444555543 23346678999999999988876
Q ss_pred ----CcEEEEECCCCeeEEEeC-CCCCCCeEEEEeCCCCcEEEeeec
Q psy16316 262 ----GRIHIWNAEKGFKVCVLD-ADHPSPVQTIQFNPKFNMMASACT 303 (335)
Q Consensus 262 ----g~v~iwd~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~~~s~~~ 303 (335)
+.|++||+.++....... .+|...+..++|+|+++.+++++.
T Consensus 245 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 245 RDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp SSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred ccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 569999998775433221 247788999999999999888764
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=3e-24 Score=208.30 Aligned_cols=286 Identities=11% Similarity=0.080 Sum_probs=196.4
Q ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccc---cceEEEEecCCCeeEEeecC-------CCCeEEEE
Q psy16316 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY---GVDLIRFTHAKQAAIHASTK-------IDDTVRYL 92 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~d~~i~~~ 92 (335)
.+.+++|+|||+++++ +.||+|++||+.+++....+..+.. .+..++|+|++...+.++.. .++.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999998877 7899999999999987766655543 48899999998766555431 24789999
Q ss_pred EcCCCceE--eeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe-cCCc------------------
Q psy16316 93 SLHDNKYI--RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV-SGSR------------------ 151 (335)
Q Consensus 93 ~~~~~~~~--~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-~~~~------------------ 151 (335)
|+.+++.. ....+|...+.+++|+|+|+.|+.++. +.|++||+.++....+... ....
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 99988762 223456666899999999999999886 7999999988776554422 1111
Q ss_pred ceEEECCCCCEEEEEEcCC----------------------------------eEEEEEccCCCCCceeeEEec---cCC
Q psy16316 152 PIAAFDPEGLIFGVGVNSD----------------------------------TIKLYDVRSFDKGPFSNFKFA---AEK 194 (335)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~----------------------------------~v~iwd~~~~~~~~~~~~~~~---~~~ 194 (335)
..+.|+|+|+.++.++.++ .+.+||+.+... ...+... ...
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~--~~~l~~~~~~~~~ 253 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH--DLEMMPPDDPRMR 253 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC--CEECCCCCCGGGS
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce--eEEeeCCccCCCc
Confidence 4578999999998887543 788999875331 1111110 011
Q ss_pred CccceEEEEccCCCEEEEEeC----CCeEEEEECCCCeeeeeecccccC-CCC-ceEEEEcCCCcEEEE--EeCCC----
Q psy16316 195 ECDWTGIKFSADGKYILISTN----GSIIRTFDAYNGQCLQTLAGFLNN-KGC-PLEASFTPDSKYVIS--GSTDG---- 262 (335)
Q Consensus 195 ~~~~~~~~~s~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~~~~~~-~~~-v~~~~~sp~~~~l~t--gs~dg---- 262 (335)
...+..++|+|||+++++... +..|++||+.++++...+...... ... ...++|+|||+.|+. +..++
T Consensus 254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 333 (723)
T 1xfd_A 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK 333 (723)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcc
Confidence 334577999999998876643 257999999999876655432111 110 136899999997765 45667
Q ss_pred --cEEEEE-CCCCee--EEEeCCCCCCCeEE-EEeCCCCcEEEeee-----ceeEEeccccc
Q psy16316 263 --RIHIWN-AEKGFK--VCVLDADHPSPVQT-IQFNPKFNMMASAC-----TNLAFWIPTYL 313 (335)
Q Consensus 263 --~v~iwd-~~~~~~--~~~~~~~h~~~v~~-v~~sp~~~~~~s~~-----~~~~~w~~~~~ 313 (335)
.|++|| ...+.. ...+.. +...+.. ++|+|+++.++..+ +.+++|..+..
T Consensus 334 ~~~l~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 334 FYHITVSSSQPNSSNDNIQSITS-GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EEEEEEECSSCCSSSCCCCBSCC-SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred eeEEEEEeccCCCCccceeEeec-CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 577777 333330 333332 2334554 69999999886543 45889987544
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=2.3e-22 Score=176.92 Aligned_cols=268 Identities=12% Similarity=0.115 Sum_probs=180.1
Q ss_pred cCCccEEEEEECCCCCEEEEecCC-CeEEEEEcc--CCcce--eeeecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 19 ENTDKITSIDYSADGLLLISCSED-DQIVIYDCE--LGTNK--RTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~D-g~i~lwd~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
.|...+.+++|+|+|++|++++.+ +.|++|+++ +++.. ..+.. ...+..++|++++...+ +++..++.+.+|+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~-~~~~~~~~i~~~d 112 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-PGSLTHISTDHQGQFVF-VGSYNAGNVSVTR 112 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-SSCCSEEEECTTSSEEE-EEETTTTEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc-CCCCcEEEEcCCCCEEE-EEecCCCeEEEEE
Confidence 577889999999999988888876 999999997 44432 23322 23678889998876543 3444588999999
Q ss_pred c---CCCceEeeecCCCCCeEEEEECCCCCEEEEee-CCCcEEEeecCC-CCceeEE----Ee--cCCcceEEECCCCCE
Q psy16316 94 L---HDNKYIRYFPGHTKKVNSLCLSPIDDTFISGS-YDKTVRLWDLRS-PNCQGIM----HV--SGSRPIAAFDPEGLI 162 (335)
Q Consensus 94 ~---~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~i~vWd~~~-~~~~~~~----~~--~~~~~~~~~~~~~~~ 162 (335)
+ ...+.+..+.++ ..+.+++|+|+++.+++++ .|+.|++||+.+ ++..... .. ......+.++|++.+
T Consensus 113 ~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~ 191 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY 191 (343)
T ss_dssp EETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred CCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCE
Confidence 9 444555666544 4588999999999887777 899999999987 5443221 11 122345789999986
Q ss_pred EEEE-EcCCeEEEEEccCCCCCc--eeeEEeccC---CCccceEEEEccCCCEEEEEe-CCCeEEEEECC--CC--eeee
Q psy16316 163 FGVG-VNSDTIKLYDVRSFDKGP--FSNFKFAAE---KECDWTGIKFSADGKYILIST-NGSIIRTFDAY--NG--QCLQ 231 (335)
Q Consensus 163 ~~~~-~~d~~v~iwd~~~~~~~~--~~~~~~~~~---~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~--~~--~~~~ 231 (335)
++++ ..++.+.+||+....... ......... .......++|+|++++|+++. .++.|++||+. ++ +.+.
T Consensus 192 l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~ 271 (343)
T 1ri6_A 192 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG 271 (343)
T ss_dssp EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEee
Confidence 6544 478999999996422111 111111111 112345799999999888655 68899999998 32 2333
Q ss_pred eecccccCCCCceEEEEcCCCcEEEEEe-CCCcEEEEEC--CCCee--EEEeCCCCCCCeEEEEeCCCC
Q psy16316 232 TLAGFLNNKGCPLEASFTPDSKYVISGS-TDGRIHIWNA--EKGFK--VCVLDADHPSPVQTIQFNPKF 295 (335)
Q Consensus 232 ~~~~~~~~~~~v~~~~~sp~~~~l~tgs-~dg~v~iwd~--~~~~~--~~~~~~~h~~~v~~v~~sp~~ 295 (335)
.+.. . ..+..++|+|++++|++++ .++.|.+|++ .++.. +..++.+ ..-..++|.|+.
T Consensus 272 ~~~~---~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g--~~p~~i~~~~~~ 334 (343)
T 1ri6_A 272 FQPT---E-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG--QGPMWVVVNAHE 334 (343)
T ss_dssp EEEC---S-SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS--SSCCEEEEEEEC
T ss_pred eecC---C-CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC--CCCeeEEEEccc
Confidence 3322 2 2267899999999888887 6899999954 45532 3333331 233577787753
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=2.5e-21 Score=169.96 Aligned_cols=256 Identities=11% Similarity=0.131 Sum_probs=175.1
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEec-CCCeEEEEEccCCcc-eeeeecccccceEEEEecCCCeeEEeecCCCC-
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCS-EDDQIVIYDCELGTN-KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDD- 87 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs-~Dg~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~- 87 (335)
.++...+..+...+ ++.|+|+|+++++++ .++.|.+||.++++. ...+..+......++|++++...+ ++...++
T Consensus 30 ~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~~ 107 (331)
T 3u4y_A 30 LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV-TVTGLNHP 107 (331)
T ss_dssp CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEE-ECCCSSSS
T ss_pred cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEE-EecCCCCc
Confidence 44555666667777 999999999665555 489999999999887 555554444444488998877655 3333234
Q ss_pred -eEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEE-EEeeCCCc-EEEeecCCCCcee-----EEEecCCcceEEECCC
Q psy16316 88 -TVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF-ISGSYDKT-VRLWDLRSPNCQG-----IMHVSGSRPIAAFDPE 159 (335)
Q Consensus 88 -~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~~-i~vWd~~~~~~~~-----~~~~~~~~~~~~~~~~ 159 (335)
.+.+||+.+++.+..+..+ ....+++|+|+++.| ++...++. |.+||+....... ..........+.++|+
T Consensus 108 ~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spd 186 (331)
T 3u4y_A 108 FNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPD 186 (331)
T ss_dssp CEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTT
T ss_pred ccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCC
Confidence 9999999999988887754 456899999999755 45566688 9999998644321 1111223345789999
Q ss_pred CCEE-EEEEcCCeEEEEEccCCCCCc-eeeEEeccCCCccceEEEEccCCCEEEEEeC-CCeEEEEECCCCee--eeeec
Q psy16316 160 GLIF-GVGVNSDTIKLYDVRSFDKGP-FSNFKFAAEKECDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQC--LQTLA 234 (335)
Q Consensus 160 ~~~~-~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~--~~~~~ 234 (335)
|+++ +++..++.|.+||+.+..... ...+. .......++|+|+|++++++.. ++.|.+||+.+++. +..+.
T Consensus 187 g~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~ 262 (331)
T 3u4y_A 187 GNFAFVANLIGNSIGILETQNPENITLLNAVG----TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFG 262 (331)
T ss_dssp SSEEEEEETTTTEEEEEECSSTTSCEEEEEEE----CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcccceeeecc----CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccc
Confidence 9854 555568999999997643200 22222 1234467999999998877654 67799999999876 33322
Q ss_pred cc----ccCCCCceEEEEcCCCcEEEEEe-CCCcEEEEECCCCe
Q psy16316 235 GF----LNNKGCPLEASFTPDSKYVISGS-TDGRIHIWNAEKGF 273 (335)
Q Consensus 235 ~~----~~~~~~v~~~~~sp~~~~l~tgs-~dg~v~iwd~~~~~ 273 (335)
.. .........++|+||+++|++++ .++.|.+||+....
T Consensus 263 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 263 HGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp CCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred cccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 21 11111123579999999876554 56799999997654
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=2.7e-22 Score=194.20 Aligned_cols=275 Identities=11% Similarity=0.051 Sum_probs=192.7
Q ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC-----
Q psy16316 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD----- 96 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~----- 96 (335)
..|.+++|||| +.++.+ .|+++++||+.+++... +..+...+..++|+|++...+.. .|+.|.+|++.+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~---~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV---RNHNLYIARGGKLGEGM 155 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE---ETTEEEEEECBCTTSCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE---ECCeEEEEecCcccccC
Confidence 56999999999 554444 35999999998876543 34445667888999988765443 479999999998
Q ss_pred CceEeeecCCCCC--------------eEEEEECCCCCEEEEee---------------------------------CCC
Q psy16316 97 NKYIRYFPGHTKK--------------VNSLCLSPIDDTFISGS---------------------------------YDK 129 (335)
Q Consensus 97 ~~~~~~~~~H~~~--------------V~~~~~~~~~~~l~s~s---------------------------------~D~ 129 (335)
++..+....+... +.++.|+|+|+.|++++ .+.
T Consensus 156 g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 156 SRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred CCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 8777655555443 48999999999999998 457
Q ss_pred cEEEeecCCCCceeEEEe---cCCcceEEECCCCCEEEEEEcCC-----eEEEEEccCCCCCceeeEEe-ccC-CCccce
Q psy16316 130 TVRLWDLRSPNCQGIMHV---SGSRPIAAFDPEGLIFGVGVNSD-----TIKLYDVRSFDKGPFSNFKF-AAE-KECDWT 199 (335)
Q Consensus 130 ~i~vWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~-----~v~iwd~~~~~~~~~~~~~~-~~~-~~~~~~ 199 (335)
.|++||+.+++....... ......+.|+|+|+.+++++.++ .|.+||+.+.. ....... ... ....+.
T Consensus 236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--~~~~~~~~~~~~~~~~~~ 313 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--FVRTLFVETDKHYVEPLH 313 (706)
T ss_dssp EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEEECSSCCCCCS
T ss_pred EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--eeeEEEEccCCCeECccC
Confidence 899999988765433211 12234578999999988887765 89999987631 1111111 111 111235
Q ss_pred EEEEcc--CCCEEEEEeCCCeEEEEECC-CCeeeeeecccccCCCCceE-EEEcCCCcEEEEEeC-CC----cEEEEECC
Q psy16316 200 GIKFSA--DGKYILISTNGSIIRTFDAY-NGQCLQTLAGFLNNKGCPLE-ASFTPDSKYVISGST-DG----RIHIWNAE 270 (335)
Q Consensus 200 ~~~~s~--~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~tgs~-dg----~v~iwd~~ 270 (335)
.++|+| +|++++++..++.+++|+.. +++..+.+.. +...+.. ++|+|+++.|+.++. ++ .|+.||..
T Consensus 314 ~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~---~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 390 (706)
T 2z3z_A 314 PLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK---GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK 390 (706)
T ss_dssp CCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC---SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred CceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC---CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence 689999 99999988888888888775 5555666643 2333444 799999987765554 44 67777877
Q ss_pred CCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec------eeEEecc
Q psy16316 271 KGFKVCVLDADHPSPVQTIQFNPKFNMMASACT------NLAFWIP 310 (335)
Q Consensus 271 ~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~------~~~~w~~ 310 (335)
++.. ..+ .|...+..++|+|+|++++.+.. .+.+|.+
T Consensus 391 ~~~~-~~l--~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 391 GGKT-KDL--TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp CCCC-EES--CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred CCCc-eec--cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 6653 233 26678999999999998876632 3777764
No 140
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=2.6e-22 Score=176.15 Aligned_cols=262 Identities=11% Similarity=0.049 Sum_probs=190.2
Q ss_pred CEEEEecCCCeEEEEEccCCcceeeeecccc--cceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecC-C----
Q psy16316 34 LLLISCSEDDQIVIYDCELGTNKRTVFSKKY--GVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPG-H---- 106 (335)
Q Consensus 34 ~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-H---- 106 (335)
.+|++++.|++|++||+.+++....+..... .+..++|++++...+ +++..++.|.+||+.+++.+..+.. +
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAY-ATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEE-EEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEE-EEeCCCCeEEEEECCCCCeEeeEEcCCcccc
Confidence 4789999999999999999887776653322 477889998866544 4445688999999999988776652 2
Q ss_pred CCCeEEEEECCCCCEEEEee------------CCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEE
Q psy16316 107 TKKVNSLCLSPIDDTFISGS------------YDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKL 174 (335)
Q Consensus 107 ~~~V~~~~~~~~~~~l~s~s------------~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 174 (335)
...+.+++|+|+++.|+.++ .|+.|.+||+.+++....+........+.++|++++++++ ++.+.+
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence 23677999999999888886 5799999999887766555544445567899999977777 688999
Q ss_pred EEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-C-----------------------eEEEEECCCCeee
Q psy16316 175 YDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-S-----------------------IIRTFDAYNGQCL 230 (335)
Q Consensus 175 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-~-----------------------~i~i~d~~~~~~~ 230 (335)
||+.+.. ....+. ... ....+.|+|++..++.+..+ + .|.+||+.+++..
T Consensus 159 ~d~~~~~--~~~~~~--~~~--~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 232 (337)
T 1pby_B 159 MDPEAGT--LVEDKP--IQS--WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232 (337)
T ss_dssp EETTTTE--EEEEEC--STT--TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred EECCCCc--Eeeeee--ccc--cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce
Confidence 9997532 111111 111 00124789999877654432 2 4689999988764
Q ss_pred eeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEe
Q psy16316 231 QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFW 308 (335)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w 308 (335)
.+. ...+...+..++|+|++++++++ ++.|++||..++.....+.. ...+.+++|+|+++++++++ +.+.+|
T Consensus 233 -~~~-~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~ 306 (337)
T 1pby_B 233 -MRE-VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAY 306 (337)
T ss_dssp -EEE-EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred -Eee-cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEE
Confidence 222 12233456789999999999988 68999999998877766643 34678999999999777664 468888
Q ss_pred cc
Q psy16316 309 IP 310 (335)
Q Consensus 309 ~~ 310 (335)
.+
T Consensus 307 d~ 308 (337)
T 1pby_B 307 DA 308 (337)
T ss_dssp ET
T ss_pred EC
Confidence 65
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=2.3e-22 Score=194.72 Aligned_cols=277 Identities=14% Similarity=0.157 Sum_probs=190.4
Q ss_pred EEEEEECCCCCEEEEecCCCeEEEEEccCCcce-eeeeccc-----------------ccceEEEEecCCCeeEEeecCC
Q psy16316 24 ITSIDYSADGLLLISCSEDDQIVIYDCELGTNK-RTVFSKK-----------------YGVDLIRFTHAKQAAIHASTKI 85 (335)
Q Consensus 24 V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~-~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 85 (335)
+..+.|. |..+++++.|+ | +||+.+++.. ..+..+. ..+..++|+++ ...++. .
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~---~ 99 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF---T 99 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE---E
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE---E
Confidence 4456777 66777788888 8 9999999873 4444432 45889999998 443333 2
Q ss_pred CCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCC-----CCceeEEEecCC----------
Q psy16316 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS-----PNCQGIMHVSGS---------- 150 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~-----~~~~~~~~~~~~---------- 150 (335)
++.+++||+.+++.... ..|...+.+++|+|+|+.|+++ .|+.|++||+.+ ++..........
T Consensus 100 ~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 177 (706)
T 2z3z_A 100 QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQ 177 (706)
T ss_dssp TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGG
T ss_pred CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhh
Confidence 59999999998876554 4467789999999999999985 789999999988 665433221111
Q ss_pred -----cceEEECCCCCEEEEEE---------------------------------cCCeEEEEEccCCCCCceeeEEecc
Q psy16316 151 -----RPIAAFDPEGLIFGVGV---------------------------------NSDTIKLYDVRSFDKGPFSNFKFAA 192 (335)
Q Consensus 151 -----~~~~~~~~~~~~~~~~~---------------------------------~d~~v~iwd~~~~~~~~~~~~~~~~ 192 (335)
...+.|+|+|+.+++++ .+..|.+||+.+.. ........
T Consensus 178 ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~---~~~~~~~~ 254 (706)
T 2z3z_A 178 REFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK---TVYLQTGE 254 (706)
T ss_dssp GCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE---EEECCCCS
T ss_pred hhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc---eEeeccCC
Confidence 25678999999999887 34679999987532 11111111
Q ss_pred CCCccceEEEEccCCCEEEEEeCCC-----eEEEEECCCCeeeeeeccccc--CCCCceEEEEcC--CCcEEEEEeCCCc
Q psy16316 193 EKECDWTGIKFSADGKYILISTNGS-----IIRTFDAYNGQCLQTLAGFLN--NKGCPLEASFTP--DSKYVISGSTDGR 263 (335)
Q Consensus 193 ~~~~~~~~~~~s~~~~~l~~~~~~~-----~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~sp--~~~~l~tgs~dg~ 263 (335)
.+...+..++|+|||+.|++++.++ .|++||+.+++..+.+..... ....+..++|+| ||++|++++.|+.
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~ 334 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW 334 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence 2334567899999999999877665 899999999844444332111 111235689999 9999999999999
Q ss_pred EEEEECC-CCeeEEEeCCCCCCCeEE-EEeCCCCcEEEeee-c----eeEEecccccc
Q psy16316 264 IHIWNAE-KGFKVCVLDADHPSPVQT-IQFNPKFNMMASAC-T----NLAFWIPTYLS 314 (335)
Q Consensus 264 v~iwd~~-~~~~~~~~~~~h~~~v~~-v~~sp~~~~~~s~~-~----~~~~w~~~~~~ 314 (335)
++||.+. ++.....+. .|...+.. ++|+|+++.++.++ . ...+|..+...
T Consensus 335 ~~l~~~~~~~~~~~~l~-~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 391 (706)
T 2z3z_A 335 NHLYLYDTTGRLIRQVT-KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG 391 (706)
T ss_dssp CEEEEEETTSCEEEECC-CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred cEEEEEECCCCEEEecC-CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence 9999876 555555553 46677877 89999998766543 2 25777665543
No 142
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=1.3e-22 Score=192.27 Aligned_cols=267 Identities=13% Similarity=0.071 Sum_probs=184.5
Q ss_pred CccEEEEEECCCCCEEEEecC-CCeEEEEEccCCcceeeeeccc-ccceEEEEecCCCeeEEeec-CCCCeEEEEEcCC-
Q psy16316 21 TDKITSIDYSADGLLLISCSE-DDQIVIYDCELGTNKRTVFSKK-YGVDLIRFTHAKQAAIHAST-KIDDTVRYLSLHD- 96 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~-Dg~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~d~~i~~~~~~~- 96 (335)
..+|.++.|+|||++||+++. ||+++||+++.++.. .+..+. ..+..++|+++ ...+.... +.+...++|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 557999999999999999987 999999999766543 344444 56788889877 32222221 2355566665533
Q ss_pred --CceEeeecCCCCCeEEEEECCCCC--EEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcC---
Q psy16316 97 --NKYIRYFPGHTKKVNSLCLSPIDD--TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNS--- 169 (335)
Q Consensus 97 --~~~~~~~~~H~~~V~~~~~~~~~~--~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--- 169 (335)
+... .+..+ ..+...+|+|+++ .+++++.|+ +.+||+.+++...+..... ....++|+|+.++.++.+
T Consensus 99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETT
T ss_pred CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCC
Confidence 2222 33222 2234557777764 455555555 5599998887655544333 567899999999988776
Q ss_pred -CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCC--eEEEEECCCCeeeeeecccccCCCCceEE
Q psy16316 170 -DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS--IIRTFDAYNGQCLQTLAGFLNNKGCPLEA 246 (335)
Q Consensus 170 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 246 (335)
..|.+||+.+.. ...+ ..+...+..++|||||+.|+++..++ .|++||+.+++.. .+..+ ...+..+
T Consensus 174 ~~~i~~~d~~~g~---~~~l---~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~---~~~~~~~ 243 (582)
T 3o4h_A 174 RVSLFTSNLSSGG---LRVF---DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP---SKDFSSY 243 (582)
T ss_dssp EEEEEEEETTTCC---CEEE---CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS---CSHHHHH
T ss_pred CeEEEEEcCCCCC---ceEe---ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC---CcChhhh
Confidence 789999987533 2222 23344567899999999999888888 8999999988765 44332 2233445
Q ss_pred E--------EcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece---eEEeccc
Q psy16316 247 S--------FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN---LAFWIPT 311 (335)
Q Consensus 247 ~--------~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~---~~~w~~~ 311 (335)
+ |+|||.++++++.|+++++|++ +.... .+.+.|.+++|+ ++.++++++.. -.+|..+
T Consensus 244 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~----~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 244 RPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE----APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC----CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred hhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec----cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 5 9999999999999999999999 54332 245688999999 99888877532 4455443
No 143
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=7.7e-21 Score=168.22 Aligned_cols=272 Identities=11% Similarity=0.146 Sum_probs=179.1
Q ss_pred cCCCeEEEEEccC--Cccee-eeecccccceEEEEecCCCeeEEeec-CCCCeEEEEEcCCCc--eEeeecCCCCCeEEE
Q psy16316 40 SEDDQIVIYDCEL--GTNKR-TVFSKKYGVDLIRFTHAKQAAIHAST-KIDDTVRYLSLHDNK--YIRYFPGHTKKVNSL 113 (335)
Q Consensus 40 s~Dg~i~lwd~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~~--~~~~~~~H~~~V~~~ 113 (335)
+.++.|.+|+++. ++... ....+...+..++|++++. .+.++. ..++.|.+|++.+++ .+..+..|...+..+
T Consensus 13 ~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 13 KTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp SSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred CCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence 3467788887654 44322 2233445677899999776 333332 347899999997765 344555677888999
Q ss_pred EECCCCCEEEEee-CCCcEEEeecCC-CCceeEEE--ecC----------CcceEEECCCCCEEEEEEcCCeEEEEEccC
Q psy16316 114 CLSPIDDTFISGS-YDKTVRLWDLRS-PNCQGIMH--VSG----------SRPIAAFDPEGLIFGVGVNSDTIKLYDVRS 179 (335)
Q Consensus 114 ~~~~~~~~l~s~s-~D~~i~vWd~~~-~~~~~~~~--~~~----------~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~ 179 (335)
+|+|++++|++++ .+++|++||+.. +....... ..+ ....++++|+|+++++...++.|.+||+..
T Consensus 92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence 9999999888887 789999999963 33222221 111 123478999999777777789999999973
Q ss_pred CCCCceeeEE-eccCCCccceEEEEccCCCEEEEE-eCCCeEEEEECCC--Cee--eeeeccccc---CCCCceEEEEcC
Q psy16316 180 FDKGPFSNFK-FAAEKECDWTGIKFSADGKYILIS-TNGSIIRTFDAYN--GQC--LQTLAGFLN---NKGCPLEASFTP 250 (335)
Q Consensus 180 ~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~-~~~~~i~i~d~~~--~~~--~~~~~~~~~---~~~~v~~~~~sp 250 (335)
. +...... ...........++|+|+|++++++ ..++.|++|++.. ++. ...+..... ....+..++|+|
T Consensus 172 ~--g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 172 A--GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp T--SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred C--CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 1 2122111 111122244679999999977765 5678899999774 442 122211111 113467799999
Q ss_pred CCcEE-EEEeCCCcEEEEECCC-C--eeEEEeCCCCCCCeEEEEeCCCCcEEEeee---ceeEEeccccccc
Q psy16316 251 DSKYV-ISGSTDGRIHIWNAEK-G--FKVCVLDADHPSPVQTIQFNPKFNMMASAC---TNLAFWIPTYLSN 315 (335)
Q Consensus 251 ~~~~l-~tgs~dg~v~iwd~~~-~--~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~---~~~~~w~~~~~~~ 315 (335)
||++| ++...++.|.+|++.. + .....+. .+...+..++|+|+++++++++ +.+.+|..+...+
T Consensus 250 dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg 320 (347)
T 3hfq_A 250 DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS-TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSG 320 (347)
T ss_dssp TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE-CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe-cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCC
Confidence 99977 5666789999999862 2 3333343 3455678999999999877764 5688896655443
No 144
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=3.6e-21 Score=171.36 Aligned_cols=268 Identities=13% Similarity=0.131 Sum_probs=171.1
Q ss_pred CCccEEEEEECCCCCEEEEecCC----CeEEEEEccCC--ccee--eeecccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 20 NTDKITSIDYSADGLLLISCSED----DQIVIYDCELG--TNKR--TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~D----g~i~lwd~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
|...+..++|+|||++|++++.+ +.|.+|+++.. +... ....+......+++ ++. .++++...++.+.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~-~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGK-NIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSS-EEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCC-EEEEEECCCCEEEE
Confidence 67778889999999999999886 89999998763 3211 22222233444555 433 34455556899999
Q ss_pred EEcCCCceEeee------cC--------CCCCeEEEEECCCCCEEEEe-eCCCcEEEeecCCCCc------e------eE
Q psy16316 92 LSLHDNKYIRYF------PG--------HTKKVNSLCLSPIDDTFISG-SYDKTVRLWDLRSPNC------Q------GI 144 (335)
Q Consensus 92 ~~~~~~~~~~~~------~~--------H~~~V~~~~~~~~~~~l~s~-s~D~~i~vWd~~~~~~------~------~~ 144 (335)
|++.....+..+ .+ +...+.+++|+|++++|+.+ ..++.|++|++..... . ..
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 999754332211 11 22346889999999866554 4589999999875442 1 11
Q ss_pred EEe--cCCcceEEECCCCCEEEEEE-cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC--CeE
Q psy16316 145 MHV--SGSRPIAAFDPEGLIFGVGV-NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG--SII 219 (335)
Q Consensus 145 ~~~--~~~~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~--~~i 219 (335)
... ......++|+|+|++++++. .++.|.+||+.......................++|+|||++|+++..+ +.|
T Consensus 205 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i 284 (361)
T 3scy_A 205 FKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV 284 (361)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred eecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence 111 22234578999999776666 6899999998742111111111112222234689999999999777665 789
Q ss_pred EEEECC--CCeeeeeecccccCCCCceEEEEcCCCcEEEEEe-CCCcEEEEEC--CCCeeEEEeCCCCCCCeEEEEeC
Q psy16316 220 RTFDAY--NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS-TDGRIHIWNA--EKGFKVCVLDADHPSPVQTIQFN 292 (335)
Q Consensus 220 ~i~d~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs-~dg~v~iwd~--~~~~~~~~~~~~h~~~v~~v~~s 292 (335)
.+|++. +++. +.+..... ...+..++|+|||++|++++ .++.|.+|++ .++.........+...+.+++|.
T Consensus 285 ~v~~~~~~~g~~-~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 285 AIFKVDETNGTL-TKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEECTTTCCE-EEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEEcCCCCcE-EEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 999985 4442 12211111 34567899999999888887 5788999654 45655443322344567888885
No 145
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=4.2e-22 Score=193.81 Aligned_cols=267 Identities=9% Similarity=0.044 Sum_probs=189.3
Q ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEccCCc--ceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE
Q psy16316 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGT--NKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI 100 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 100 (335)
.|.+++|||||++|++++. ++|++||+.++. ....+..+...+..++|+|++...++.+ ++.|.+||+.+++..
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~---~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR---GRNLWVIDLASGRQM 185 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE---TTEEEEEETTTTEEE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe---CCcEEEEecCCCCEE
Confidence 4889999999999999987 999999999873 3445555667788999999987655543 568999999998877
Q ss_pred eeecCCCCC----------------eEEEEECCCCCEEEEeeCCC---------------------------------cE
Q psy16316 101 RYFPGHTKK----------------VNSLCLSPIDDTFISGSYDK---------------------------------TV 131 (335)
Q Consensus 101 ~~~~~H~~~----------------V~~~~~~~~~~~l~s~s~D~---------------------------------~i 131 (335)
+....+... +.+++|+|+|+.|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 766555443 47899999999999998876 88
Q ss_pred EEeecCC-CCceeEEEe---cCCcceEEECCCCCEEEEEEc-----CCeEEEEEccCCCCCceeeEEeccCC-CccceEE
Q psy16316 132 RLWDLRS-PNCQGIMHV---SGSRPIAAFDPEGLIFGVGVN-----SDTIKLYDVRSFDKGPFSNFKFAAEK-ECDWTGI 201 (335)
Q Consensus 132 ~vWd~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----d~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~ 201 (335)
.+||+.+ ++....... ......+.| |+|+.++++.. +..|.+||+.+... .......... ...+..+
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~~ 342 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ--RVLAHETSPTWVPLHNSL 342 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE--EEEEEEECSSCCCCCSCC
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce--EEEEEcCCCCcCCcCCce
Confidence 9999988 765433211 122345689 99998887654 46899999876431 1111111110 0023468
Q ss_pred EEccCCCEEEEEeCCCeEEEEECC-CCeeeeeecccccCCCCceEE-EEcCCCcEEE-EEeCCC--cEEEEECCC-CeeE
Q psy16316 202 KFSADGKYILISTNGSIIRTFDAY-NGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVI-SGSTDG--RIHIWNAEK-GFKV 275 (335)
Q Consensus 202 ~~s~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~-~~sp~~~~l~-tgs~dg--~v~iwd~~~-~~~~ 275 (335)
+|+|||++++++..++.+++|... +++ .+.+..+ ...+..+ .|+|+++.|+ +++.++ .++||++.. +...
T Consensus 343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~---~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~ 418 (741)
T 2ecf_A 343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG---NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQP 418 (741)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS---SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCC
T ss_pred EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec---ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCe
Confidence 999999988888888877777654 344 5555432 3345566 5999998765 555555 899998763 4434
Q ss_pred EEeCCCCCCCeEEEEeCCCCcEEEeee
Q psy16316 276 CVLDADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 276 ~~~~~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
..+.. ...+..++|+|++++++...
T Consensus 419 ~~l~~--~~~~~~~~~spdg~~l~~~~ 443 (741)
T 2ecf_A 419 QRLSK--APGMHSASFARNASVYVDSW 443 (741)
T ss_dssp EECCC--SCSEEEEEECTTSSEEEEEE
T ss_pred eeccc--CCCceEEEECCCCCEEEEEe
Confidence 44432 56788999999999887654
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=3.2e-22 Score=194.08 Aligned_cols=281 Identities=12% Similarity=0.085 Sum_probs=189.4
Q ss_pred cceeeeccCCc---cEEEEEECCCCCEEEEecCC---------CeEEEEEccCCcceeeeec---ccccceEEEEecCCC
Q psy16316 12 KVAKLFRENTD---KITSIDYSADGLLLISCSED---------DQIVIYDCELGTNKRTVFS---KKYGVDLIRFTHAKQ 76 (335)
Q Consensus 12 ~~~~~~~~h~~---~V~~v~~s~~g~~lasgs~D---------g~i~lwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 76 (335)
+..+.+.+|.. .|.+++|||||++||+++.| +.+++||+++++. ..+.. +...+..++|+|++.
T Consensus 48 ~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~ 126 (723)
T 1xfd_A 48 TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ 126 (723)
T ss_dssp CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT
T ss_pred cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC
Confidence 44566777765 49999999999999999875 7888999998875 22322 233477889999987
Q ss_pred eeEEeecCCCCeEEEEEcCCCceEeeecCCCCCe------------------EEEEECCCCCEEEEeeCCC---------
Q psy16316 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKV------------------NSLCLSPIDDTFISGSYDK--------- 129 (335)
Q Consensus 77 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V------------------~~~~~~~~~~~l~s~s~D~--------- 129 (335)
...+.+ ++.+.+||+.+++..+....+...+ .+++|+|+|+.|++++.|+
T Consensus 127 ~la~~~---~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~ 203 (723)
T 1xfd_A 127 QLIFIF---ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP 203 (723)
T ss_dssp CEEEEE---TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred EEEEEE---CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEee
Confidence 665554 3789999999988877766655444 7899999999999988664
Q ss_pred -------------------------cEEEeecCCCCceeEEEe-------cCCcceEEECCCCCEEEEEEcC----CeEE
Q psy16316 130 -------------------------TVRLWDLRSPNCQGIMHV-------SGSRPIAAFDPEGLIFGVGVNS----DTIK 173 (335)
Q Consensus 130 -------------------------~i~vWd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~d----~~v~ 173 (335)
.|++||+.++++...+.. ......+.|+|+|+++++.... ..|.
T Consensus 204 ~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~ 283 (723)
T 1xfd_A 204 TYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILT 283 (723)
T ss_dssp CCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEE
T ss_pred ccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEE
Confidence 799999988765332221 1123457899999988766533 5799
Q ss_pred EEEccCCCCCceeeEEeccCCCcc--ceEEEEccCCCEEEE--EeCCC------eEEEEE-CCCCe--eeeeecccccCC
Q psy16316 174 LYDVRSFDKGPFSNFKFAAEKECD--WTGIKFSADGKYILI--STNGS------IIRTFD-AYNGQ--CLQTLAGFLNNK 240 (335)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~l~~--~~~~~------~i~i~d-~~~~~--~~~~~~~~~~~~ 240 (335)
+||+.+... ............. ...++|+|||+.|+. +..++ .|++|| ..+++ +.+.+.. ..
T Consensus 284 ~~d~~~g~~--~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~---~~ 358 (723)
T 1xfd_A 284 LCDATTGVC--TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS---GD 358 (723)
T ss_dssp EEETTTCCE--EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC---SS
T ss_pred EEeCCCCcc--eEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec---CC
Confidence 999875321 1111111111000 136799999997775 44555 577777 34443 1344432 11
Q ss_pred CCceE-EEEcCCCcEEEEEeCC---CcEEEEECCCCe--eEEEeCCC--CCCCeEEEEeCCCCcEEEee
Q psy16316 241 GCPLE-ASFTPDSKYVISGSTD---GRIHIWNAEKGF--KVCVLDAD--HPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 241 ~~v~~-~~~sp~~~~l~tgs~d---g~v~iwd~~~~~--~~~~~~~~--h~~~v~~v~~sp~~~~~~s~ 301 (335)
..+.. ++|+|||+.|+..+.+ +.+++|++.... +...+... |...+..++|+|++++++..
T Consensus 359 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 359 WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 22333 6899999998766554 789999986421 22223222 66778999999999987754
No 147
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=6.5e-22 Score=199.53 Aligned_cols=270 Identities=13% Similarity=0.085 Sum_probs=202.5
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccC-CcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCEL-GTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
+.+.+|.+.+.++.|+++ .++++++.|++++||++.. +.....+..+. .+...+|++++...+.. .++.+.+|+
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~---~~~~i~~~d 271 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS---KGGSIYIFN 271 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE---ETTEEEEEC
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE---eCCEEEEec
Confidence 445899999999999998 7778888999999998765 33344443333 45667899887755443 388999999
Q ss_pred cCCCceEeeecC-----------CCCCeEEEEEC-CCCCEEEEeeCCCcEEEeecCCCCceeEEEecC-CcceEEECCCC
Q psy16316 94 LHDNKYIRYFPG-----------HTKKVNSLCLS-PIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG-SRPIAAFDPEG 160 (335)
Q Consensus 94 ~~~~~~~~~~~~-----------H~~~V~~~~~~-~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-~~~~~~~~~~~ 160 (335)
+...+. ..+.+ |...+.+++|+ |+|+.|++++ ++.|.+||+..+.......... ......|+ +|
T Consensus 272 ~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg 348 (1045)
T 1k32_A 272 PDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TK 348 (1045)
T ss_dssp TTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SE
T ss_pred CCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CC
Confidence 955443 35555 44578999999 9999999887 8899999998765433222222 33456788 99
Q ss_pred CEEEEEEcCCeEE-EEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccC
Q psy16316 161 LIFGVGVNSDTIK-LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN 239 (335)
Q Consensus 161 ~~~~~~~~d~~v~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 239 (335)
..++.++.+..+. +||+.... ... .. .+...+..++|+|||++|++++.++.|++||+.+++....+.+ +
T Consensus 349 ~~l~~~s~~~~l~~~~d~~~~~---~~~--l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~---~ 419 (1045)
T 1k32_A 349 VAFIHGTREGDFLGIYDYRTGK---AEK--FE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS---R 419 (1045)
T ss_dssp EEEEEEETTEEEEEEEETTTCC---EEE--CC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---S
T ss_pred CeEEEEECCCceEEEEECCCCC---ceE--ec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC---C
Confidence 8898888877888 88876421 111 11 3345668899999999999999999999999999887665544 3
Q ss_pred CCCceEEEEcCCCcEEEEEeCCC----------cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeec
Q psy16316 240 KGCPLEASFTPDSKYVISGSTDG----------RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT 303 (335)
Q Consensus 240 ~~~v~~~~~sp~~~~l~tgs~dg----------~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~ 303 (335)
...+..++|||||++|++++.++ .|++||+.++. ...+ ..|...+..++|+|+|+.++.++.
T Consensus 420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l-~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAA-TTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEEC-SCSSSBEEEEEECTTSCEEEEEES
T ss_pred CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEe-eCCCcccCCceEcCCCCEEEEEec
Confidence 44566799999999999988754 89999998876 4444 457788999999999998887763
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=1.1e-21 Score=168.43 Aligned_cols=240 Identities=11% Similarity=0.088 Sum_probs=168.8
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccC-Ccceeeeecc-cccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCEL-GTNKRTVFSK-KYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
..+..|.+.|.++.|+|+|++|++++ ++.|++||+++ ++.......+ ...+..++|++++...+......++..++|
T Consensus 35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~ 113 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIY 113 (297)
T ss_dssp EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEE
T ss_pred eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEE
Confidence 35667899999999999999999987 78999999998 7665544343 356788999998876665553344455555
Q ss_pred Ec--CCCceEeeecCCCCCeEEEEECCCCCEEE-EeeCCCcEEEeecC--CCCceeEEEecCCcceEEECCCCCEEEEEE
Q psy16316 93 SL--HDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLR--SPNCQGIMHVSGSRPIAAFDPEGLIFGVGV 167 (335)
Q Consensus 93 ~~--~~~~~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D~~i~vWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (335)
.+ .+++ .+.+..+ ..+.+++|+|+++.|+ +++.|+.+++|++. ++..............+.|+|++..++.++
T Consensus 114 ~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 191 (297)
T 2ojh_A 114 LLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNS 191 (297)
T ss_dssp EEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEE
T ss_pred EEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEe
Confidence 44 4544 3444433 3489999999999776 78899999999964 333322222334455678999999877666
Q ss_pred -cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-----------CeEEEEECCCCeeeeeecc
Q psy16316 168 -NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-----------SIIRTFDAYNGQCLQTLAG 235 (335)
Q Consensus 168 -~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-----------~~i~i~d~~~~~~~~~~~~ 235 (335)
.++.+++|++.... .... ....+...+..++|+|++++|++++.+ ..|++||+.+++......
T Consensus 192 ~~~~~~~i~~~~~~~-~~~~---~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~- 266 (297)
T 2ojh_A 192 SRTGQMQIWRVRVDG-SSVE---RITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD- 266 (297)
T ss_dssp CTTSSCEEEEEETTS-SCEE---ECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE-
T ss_pred cCCCCccEEEECCCC-CCcE---EEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec-
Confidence 58899999986322 1221 222333456779999999999887764 569999998876533221
Q ss_pred cccCCCCceEEEEcCCCcEEEEEeCCC
Q psy16316 236 FLNNKGCPLEASFTPDSKYVISGSTDG 262 (335)
Q Consensus 236 ~~~~~~~v~~~~~sp~~~~l~tgs~dg 262 (335)
...+...+..++|+|++++|++++.|.
T Consensus 267 ~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 267 LFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCCCCcccccceECCCCCEEEEEEecc
Confidence 122345567799999999998888764
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=1.4e-20 Score=166.54 Aligned_cols=255 Identities=14% Similarity=0.185 Sum_probs=167.3
Q ss_pred ccCCccEEEEEECCCCCEEEEecC---CCeEEEEEccCCcc--eeeeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 18 RENTDKITSIDYSADGLLLISCSE---DDQIVIYDCELGTN--KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~g~~lasgs~---Dg~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
..+...+..++|+|||+ |++++. ++.|++||+++++. ...+..+...+..++|++++...+.+ ...++.+.+|
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~-~~~~~~v~v~ 113 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSA-NYHKGTAEVM 113 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEE-ETTTTEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEE-eCCCCEEEEE
Confidence 34557788899999999 554443 79999999987753 23333455677889999987755443 3367899999
Q ss_pred EcCC-Cc--eEeeecC---------CCCCeEEEEECCCCCEEEEeeCCCcEEEeecC-CCCceeEE--Ee-cC-CcceEE
Q psy16316 93 SLHD-NK--YIRYFPG---------HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLR-SPNCQGIM--HV-SG-SRPIAA 155 (335)
Q Consensus 93 ~~~~-~~--~~~~~~~---------H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~-~~~~~~~~--~~-~~-~~~~~~ 155 (335)
++.. +. .+..+.. +...+.+++|+|+++++++...++.|++||+. ++...... .. .+ ....++
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~ 193 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV 193 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence 9963 22 2333321 12348899999999977777789999999998 44433221 11 11 233478
Q ss_pred ECCCCCEEE-EEEcCCeEEEEEccCCCCCceeeEEeccCCC------ccceEEEEccCCCEEEE-EeCCCeEEEEECCCC
Q psy16316 156 FDPEGLIFG-VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKE------CDWTGIKFSADGKYILI-STNGSIIRTFDAYNG 227 (335)
Q Consensus 156 ~~~~~~~~~-~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~l~~-~~~~~~i~i~d~~~~ 227 (335)
|+|+|++++ ++..++.+.+|++.... +............ .....++|+|+|++|++ ...++.|.+|++...
T Consensus 194 ~spdg~~l~v~~~~~~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 194 FSPDGQYAFLAGELSSQIASLKYDTQT-GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCC-CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 999999554 45678899999987421 1111111111111 23567999999998855 456789999998732
Q ss_pred eeeeeecccccCCCCceEEEEcCCCcEEEEEeCC-CcEEEEE--CCCCeeE
Q psy16316 228 QCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD-GRIHIWN--AEKGFKV 275 (335)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d-g~v~iwd--~~~~~~~ 275 (335)
...+.+.....+...+..++|+|||++|++++.+ +.|.+|+ ..++...
T Consensus 273 g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 273 GHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp GCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 1222222222223457789999999988887764 8999994 4455443
No 150
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=1.7e-21 Score=196.51 Aligned_cols=275 Identities=13% Similarity=0.036 Sum_probs=197.7
Q ss_pred CCccEEEEEEC-CCCCEEEEecCCCeEEEEEccCCcceeeeecccc-cceEEEEecCCCeeEEeecCCCCeEE-EEEcCC
Q psy16316 20 NTDKITSIDYS-ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY-GVDLIRFTHAKQAAIHASTKIDDTVR-YLSLHD 96 (335)
Q Consensus 20 h~~~V~~v~~s-~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~-~~~~~~ 96 (335)
|.+.|.++.|+ |||++||+++ ++.+.+|+...+.... +..+.. .+..++|+ ++...+.++ .+..+. +|++..
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s--~~~~l~~~~d~~~ 368 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGT--REGDFLGIYDYRT 368 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEE--TTEEEEEEEETTT
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEE--CCCceEEEEECCC
Confidence 55679999999 9999999988 8899999998776433 344444 67778887 544433333 367777 889887
Q ss_pred CceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE-EecCCcceEEECCCCCEEEEEEcCC-----
Q psy16316 97 NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNSD----- 170 (335)
Q Consensus 97 ~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~----- 170 (335)
++..... +|...+.+++|+|+|+.|++++.|+.|++||+.+++..... ...+....+.|+|+|+++++++.++
T Consensus 369 ~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~ 447 (1045)
T 1k32_A 369 GKAEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETD 447 (1045)
T ss_dssp CCEEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTC
T ss_pred CCceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcccccc
Confidence 7655444 88899999999999999999999999999999988876655 3334446688999999988877644
Q ss_pred -----eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeee--------------
Q psy16316 171 -----TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQ-------------- 231 (335)
Q Consensus 171 -----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~-------------- 231 (335)
.|++||+.+.. ......+......++|+|+|++|+.++.++....|+........
T Consensus 448 ~~~~~~i~l~d~~~g~------~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1045)
T 1k32_A 448 GYVMQAIHVYDMEGRK------IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPG 521 (1045)
T ss_dssp SCCEEEEEEEETTTTE------EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTT
T ss_pred CCCCCeEEEEECCCCc------EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCC
Confidence 99999987521 12222333445678999999999999887777777654322100
Q ss_pred -------------------eecc-------cccCCCCceEEEEcCCCcEEEE-------------EeCCCcEEEEECCCC
Q psy16316 232 -------------------TLAG-------FLNNKGCPLEASFTPDSKYVIS-------------GSTDGRIHIWNAEKG 272 (335)
Q Consensus 232 -------------------~~~~-------~~~~~~~v~~~~~sp~~~~l~t-------------gs~dg~v~iwd~~~~ 272 (335)
.+.+ ...+...+..++|+||++++++ .+...+|++||..++
T Consensus 522 ~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~ 601 (1045)
T 1k32_A 522 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 601 (1045)
T ss_dssp CCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC
T ss_pred CCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCC
Confidence 0000 0112234567899999988875 123457888999887
Q ss_pred eeEEEeCCCCCCCeEEEEeCCCCcEEEeee-ceeEEeccc
Q psy16316 273 FKVCVLDADHPSPVQTIQFNPKFNMMASAC-TNLAFWIPT 311 (335)
Q Consensus 273 ~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~-~~~~~w~~~ 311 (335)
...... ..+..++|||+|+.+++++ +.+++|...
T Consensus 602 ~~~~l~-----~~v~~~~~S~DG~~l~~~~~~~i~~~d~~ 636 (1045)
T 1k32_A 602 KVTEVK-----NNLTDLRLSADRKTVMVRKDDGKIYTFPL 636 (1045)
T ss_dssp CEEEEE-----EEEEEEEECTTSCEEEEEETTSCEEEEES
T ss_pred cEEEee-----cCcceEEECCCCCEEEEEcCCcEEEEeCc
Confidence 654332 4678999999999988776 468888763
No 151
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=4.7e-21 Score=168.09 Aligned_cols=257 Identities=9% Similarity=0.042 Sum_probs=184.0
Q ss_pred ccceeeecc-CCc-cEEEEEECCCCCE-EEEecCCCeEEEEEccCCcceeeeecc-----cccceEEEEecCCCeeEEee
Q psy16316 11 YKVAKLFRE-NTD-KITSIDYSADGLL-LISCSEDDQIVIYDCELGTNKRTVFSK-----KYGVDLIRFTHAKQAAIHAS 82 (335)
Q Consensus 11 ~~~~~~~~~-h~~-~V~~v~~s~~g~~-lasgs~Dg~i~lwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 82 (335)
.++.+.+.. +.. .+..+.|+|+|++ +++++.++.|.+||+.+++....+... ...+..++|++++...+.+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 100 (337)
T 1pby_B 21 MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE 100 (337)
T ss_dssp TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEE
T ss_pred CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEe
Confidence 344455542 322 4789999999975 467778899999999998876655432 12567788998877655553
Q ss_pred cC----------CCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcc
Q psy16316 83 TK----------IDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRP 152 (335)
Q Consensus 83 ~~----------~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~ 152 (335)
.. .++.+.+||+.+++.+..+.. ...+.+++|+|++++|+.+ ++.|.+||+.+++....+.......
T Consensus 101 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~ 177 (337)
T 1pby_B 101 SPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEA 177 (337)
T ss_dssp EEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTT
T ss_pred cccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCC
Confidence 21 479999999999888877764 4567889999999988877 6899999999877655443332112
Q ss_pred eEEECCCCCEEEEEEc-CC-----------------------eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCC
Q psy16316 153 IAAFDPEGLIFGVGVN-SD-----------------------TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK 208 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~-d~-----------------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 208 (335)
...++|++..+..... ++ .+.+||+.+.+. ..... ........+++|+|+++
T Consensus 178 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~---~~~~~-~~~~~~~~~~~~s~dg~ 253 (337)
T 1pby_B 178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM---AMREV-RIMDVFYFSTAVNPAKT 253 (337)
T ss_dssp TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE---EEEEE-EECSSCEEEEEECTTSS
T ss_pred CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc---eEeec-CCCCCceeeEEECCCCC
Confidence 2367888775543322 22 468999876432 11221 11223456799999999
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC
Q psy16316 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA 280 (335)
Q Consensus 209 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~ 280 (335)
+++++ ++.|++||+.+++....+.. ...+..++|+|++++|++++.++.|++||..++.....++.
T Consensus 254 ~l~~~--~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 254 RAFGA--YNVLESFDLEKNASIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEEE--ESEEEEEETTTTEEEEEEEC----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEEEe--CCeEEEEECCCCcCcceecC----CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 99888 68999999999987766643 23467899999999999999999999999998877766643
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=9.2e-21 Score=167.17 Aligned_cols=243 Identities=10% Similarity=0.035 Sum_probs=177.6
Q ss_pred EEEECCCCCEEEEecCCCeEEEEEccCCcceeeeeccc-ccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeec
Q psy16316 26 SIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKK-YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFP 104 (335)
Q Consensus 26 ~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 104 (335)
.+++++++.++++++.|++|++||+.+++....+.... ..+..+++++++...+ ++...++.+.+||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~-v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAY-VLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEE-EEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEE-EEeCCCCcEEEEeCCCCcEEEEEE
Confidence 45688999999999999999999999998777665432 2577888988775443 444568999999999998877765
Q ss_pred CC------CCCeEEEEECCCCCEEEEeeCC------------CcEEEeecCCCCc---eeEEEecCCcceEEECCCCCEE
Q psy16316 105 GH------TKKVNSLCLSPIDDTFISGSYD------------KTVRLWDLRSPNC---QGIMHVSGSRPIAAFDPEGLIF 163 (335)
Q Consensus 105 ~H------~~~V~~~~~~~~~~~l~s~s~D------------~~i~vWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 163 (335)
.+ ...+.+++|+|++++|++++.+ +.|.+||+.+++. ............++++|+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~ 162 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY 162 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEE
Confidence 32 2337899999999999998866 9999999987443 2333333344567799999944
Q ss_pred EEEEcCCeEEEEEccCCCCCceeeEEecc---------------------------------------------------
Q psy16316 164 GVGVNSDTIKLYDVRSFDKGPFSNFKFAA--------------------------------------------------- 192 (335)
Q Consensus 164 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~--------------------------------------------------- 192 (335)
+ ++ +.|.+||+.+... ...+....
T Consensus 163 ~-~~--~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 237 (349)
T 1jmx_B 163 V-AG--PDIYKMDVKTGKY--TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS 237 (349)
T ss_dssp E-ES--SSEEEECTTTCCE--EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred E-cc--CcEEEEeCCCCce--eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEE
Confidence 4 43 4499999875321 11111000
Q ss_pred --------------CCCccceEEEEcc-CCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEE
Q psy16316 193 --------------EKECDWTGIKFSA-DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS 257 (335)
Q Consensus 193 --------------~~~~~~~~~~~s~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~t 257 (335)
.....+.+++++| ++++++++ ++.|.+||+.+++..+.+.. ...+..++|+|++++|++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~ 311 (349)
T 1jmx_B 238 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL----DHTYYCVAFDKKGDKLYL 311 (349)
T ss_dssp EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC----SSCCCEEEECSSSSCEEE
T ss_pred EeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC----CCCccceEECCCCCEEEE
Confidence 0001234677889 99999888 78999999999987776642 123568999999998888
Q ss_pred EeCCCcEEEEECCCCeeEEEeCC
Q psy16316 258 GSTDGRIHIWNAEKGFKVCVLDA 280 (335)
Q Consensus 258 gs~dg~v~iwd~~~~~~~~~~~~ 280 (335)
++.++.|++||..++..+..++.
T Consensus 312 ~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 312 GGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp ESBSSEEEEEETTTTEEEEEEEC
T ss_pred ecCCCeEEEEeccccceeeeeec
Confidence 88899999999998887766643
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.88 E-value=7e-21 Score=170.82 Aligned_cols=294 Identities=11% Similarity=0.032 Sum_probs=194.3
Q ss_pred cceeeeccCCccEEE-----EEECCCCCEEEEecC-CC--eEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec
Q psy16316 12 KVAKLFRENTDKITS-----IDYSADGLLLISCSE-DD--QIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST 83 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~-----v~~s~~g~~lasgs~-Dg--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (335)
...+.+..|.+.... .+|+|||++||.++. |+ .|.+||+++++.......+...+....|++++...++..
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~- 99 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK- 99 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEE-
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEe-
Confidence 344567777776666 889999999998887 77 488889988876554444444444567999877655444
Q ss_pred CCCCeEEEEEcCCCceEeeecCCCCCeEEEE--ECCCCCEEEEe----------------------eCCCcEEEeecCCC
Q psy16316 84 KIDDTVRYLSLHDNKYIRYFPGHTKKVNSLC--LSPIDDTFISG----------------------SYDKTVRLWDLRSP 139 (335)
Q Consensus 84 ~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~--~~~~~~~l~s~----------------------s~D~~i~vWd~~~~ 139 (335)
.+..+.+||+.+++....+..+...+.... ++|++..++.. +.+..|.+||+.++
T Consensus 100 -~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 178 (388)
T 3pe7_A 100 -DGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG 178 (388)
T ss_dssp -TTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred -CCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence 467999999999988777776666554444 48899888742 34578999999988
Q ss_pred CceeEEEecCCcceEEECC-CCCEEEEEEcC------CeEEEEEccCCCCCceeeEEeccCCC-ccceEEEEccCCCEEE
Q psy16316 140 NCQGIMHVSGSRPIAAFDP-EGLIFGVGVNS------DTIKLYDVRSFDKGPFSNFKFAAEKE-CDWTGIKFSADGKYIL 211 (335)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~ 211 (335)
+...+...........|+| +|+.++....+ ..|.++|..... ...+ ..... ..+...+|+|||+.|+
T Consensus 179 ~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l--~~~~~~~~~~~~~~spdg~~l~ 253 (388)
T 3pe7_A 179 ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN---MRKV--KTHAEGESCTHEFWVPDGSALV 253 (388)
T ss_dssp CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC---CEES--CCCCTTEEEEEEEECTTSSCEE
T ss_pred ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc---eEEe--eeCCCCcccccceECCCCCEEE
Confidence 7665555544456678999 99888777653 367777765421 1111 11111 2345688999999776
Q ss_pred EEeC--CC---eEEEEECCCCeeee--eecccccCCCCceEEEEcCCCcEEEEE---------eCCCcEEEEECCCCeeE
Q psy16316 212 ISTN--GS---IIRTFDAYNGQCLQ--TLAGFLNNKGCPLEASFTPDSKYVISG---------STDGRIHIWNAEKGFKV 275 (335)
Q Consensus 212 ~~~~--~~---~i~i~d~~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~tg---------s~dg~v~iwd~~~~~~~ 275 (335)
..+. +. .|++||+.+++... .+.++......+....|+|||+.|+.. ..+..|++||..++...
T Consensus 254 ~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 333 (388)
T 3pe7_A 254 YVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH 333 (388)
T ss_dssp EEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE
T ss_pred EEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE
Confidence 5433 22 39999999886422 222110000011224799999988754 45678999999887654
Q ss_pred EEeCCCCCC-----------CeEEEEeCCCCcEEEeee---ceeEEecccccc
Q psy16316 276 CVLDADHPS-----------PVQTIQFNPKFNMMASAC---TNLAFWIPTYLS 314 (335)
Q Consensus 276 ~~~~~~h~~-----------~v~~v~~sp~~~~~~s~~---~~~~~w~~~~~~ 314 (335)
... .|.. .+..++|+|+|+.++.++ +...+|..+..+
T Consensus 334 ~l~--~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 334 RVA--RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp EEE--ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred Eec--cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 332 2333 578899999998877664 456778665544
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=4.4e-19 Score=157.82 Aligned_cols=281 Identities=12% Similarity=0.180 Sum_probs=179.7
Q ss_pred CCCEEEEe----cCCCeEEEEEcc--CCcceeeeecccccceEEEEecCCCeeEEeecC--CCCeEEEEEcCC--Cce--
Q psy16316 32 DGLLLISC----SEDDQIVIYDCE--LGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTK--IDDTVRYLSLHD--NKY-- 99 (335)
Q Consensus 32 ~g~~lasg----s~Dg~i~lwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~~~~~~~--~~~-- 99 (335)
+..+++.| +.++.|.+|+++ +++.......+...+..++|++++...+.++.. .++.+.+|++.. ++.
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~ 91 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL 91 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence 33445555 457899999774 444332221255567778999987655554432 347999998865 433
Q ss_pred EeeecCCCCCeEEEEECCCCCEEEEee-CCCcEEEeecCCCCcee----EEEecCC-----------cceEEECCCCCEE
Q psy16316 100 IRYFPGHTKKVNSLCLSPIDDTFISGS-YDKTVRLWDLRSPNCQG----IMHVSGS-----------RPIAAFDPEGLIF 163 (335)
Q Consensus 100 ~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~i~vWd~~~~~~~~----~~~~~~~-----------~~~~~~~~~~~~~ 163 (335)
+.....+......+++ +++.|+.++ .+++|.+||+....... .....+. ...++++|+|+++
T Consensus 92 ~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l 169 (361)
T 3scy_A 92 LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL 169 (361)
T ss_dssp EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence 3344445567778888 677776665 68999999997543221 1111111 1347899999855
Q ss_pred EE-EEcCCeEEEEEccCCCC----Cceee----EEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCee--ee
Q psy16316 164 GV-GVNSDTIKLYDVRSFDK----GPFSN----FKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQC--LQ 231 (335)
Q Consensus 164 ~~-~~~d~~v~iwd~~~~~~----~~~~~----~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~--~~ 231 (335)
++ +..++.+.+|++..... ..+.. .............++|+|+|++++++. .++.|.+|++.+++. ..
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~ 249 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQ 249 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeE
Confidence 54 44578999999875332 10110 111122233456899999999888777 578999999987754 22
Q ss_pred eecccccCCCCceEEEEcCCCcEEEEEeC--CCcEEEEECC--CCe--eEEEeCCCCCCCeEEEEeCCCCcEEEeee---
Q psy16316 232 TLAGFLNNKGCPLEASFTPDSKYVISGST--DGRIHIWNAE--KGF--KVCVLDADHPSPVQTIQFNPKFNMMASAC--- 302 (335)
Q Consensus 232 ~~~~~~~~~~~v~~~~~sp~~~~l~tgs~--dg~v~iwd~~--~~~--~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--- 302 (335)
.+.....+...+..++|+|||++|++++. ++.|.+|++. ++. ....+.. ...+..++|+|+|++++.++
T Consensus 250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTSCEEEEEETTT
T ss_pred EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCCCEEEEEECCC
Confidence 23222222334568999999998866665 4889999985 344 2333332 45678999999999877765
Q ss_pred ceeEEecccccccc
Q psy16316 303 TNLAFWIPTYLSNH 316 (335)
Q Consensus 303 ~~~~~w~~~~~~~~ 316 (335)
+.+.+|..+...+.
T Consensus 328 ~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 328 NVIQIFERDQATGL 341 (361)
T ss_dssp TEEEEEEECTTTCC
T ss_pred CCEEEEEEECCCCc
Confidence 56889877665543
No 155
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=3.2e-19 Score=159.20 Aligned_cols=252 Identities=11% Similarity=0.118 Sum_probs=166.6
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEcc-CCcceeeeecc-cccceEEEEecCCCeeEEeecC-------------
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCE-LGTNKRTVFSK-KYGVDLIRFTHAKQAAIHASTK------------- 84 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------- 84 (335)
+...+..++|+|||++|++++.+ +|.+||++ +++........ ......+++++++...+++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 44568899999999999999888 99999997 66543322111 1224456777776543343332
Q ss_pred CCCeEEEEEcC-CCceEeeec----CCCCCeEEEEECCCCCEEEEee-CCCcEEEeecC-CCCceeEEEe-----cCCcc
Q psy16316 85 IDDTVRYLSLH-DNKYIRYFP----GHTKKVNSLCLSPIDDTFISGS-YDKTVRLWDLR-SPNCQGIMHV-----SGSRP 152 (335)
Q Consensus 85 ~d~~i~~~~~~-~~~~~~~~~----~H~~~V~~~~~~~~~~~l~s~s-~D~~i~vWd~~-~~~~~~~~~~-----~~~~~ 152 (335)
.++.+.+|++. .++....+. .+...+.+++|+|+|++|+++. .++.|++||+. +++....... .....
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 58899999997 455544333 2557899999999999887765 47899999998 6664332221 12234
Q ss_pred eEEECCCCCEEEEEEc-CCeEEEEEccCCCCCce---eeEEeccCC----Cc------cceEEE-EccCCCEEEEEeCCC
Q psy16316 153 IAAFDPEGLIFGVGVN-SDTIKLYDVRSFDKGPF---SNFKFAAEK----EC------DWTGIK-FSADGKYILISTNGS 217 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~-d~~v~iwd~~~~~~~~~---~~~~~~~~~----~~------~~~~~~-~s~~~~~l~~~~~~~ 217 (335)
.++|+|+|++++++.. ++++.+|++........ ......... .. ...+++ |+|||++|+++..+.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 5789999998877664 68999998753211111 111111111 11 356899 999999988776432
Q ss_pred ------eEEEEECC-CCeeeeeecccccCCCCceEEEEcC---CCcEEEEEeCC-CcEEEEECCCC
Q psy16316 218 ------IIRTFDAY-NGQCLQTLAGFLNNKGCPLEASFTP---DSKYVISGSTD-GRIHIWNAEKG 272 (335)
Q Consensus 218 ------~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~tgs~d-g~v~iwd~~~~ 272 (335)
.|.+|++. +++..............+..++|+| ||++|++++.+ ++|.+|+....
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999986 5654321110111223355689999 89999999875 89999998655
No 156
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=2.3e-19 Score=158.60 Aligned_cols=240 Identities=10% Similarity=0.053 Sum_probs=178.0
Q ss_pred ccceeeeccCCccEEEEEECCCCC-EEEEecCCCeEEEEEccCCcceeeeecccc---------cceEEEEecCCCeeEE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKY---------GVDLIRFTHAKQAAIH 80 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 80 (335)
.++.+.+... ..+..+.|+|+|+ +++++..++.|.+||.++++....+..+.. .+..+++++++...++
T Consensus 79 ~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 157 (353)
T 3vgz_A 79 LEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYI 157 (353)
T ss_dssp CCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEE
T ss_pred CeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEE
Confidence 3344444433 3477899999999 455667789999999999987776654322 2567899988877666
Q ss_pred eecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC-----CcceEE
Q psy16316 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG-----SRPIAA 155 (335)
Q Consensus 81 ~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-----~~~~~~ 155 (335)
+..+.++.+.+||+.+++.+..+..+...+.+++|+|+++.|+.++.|+.|.+||+.+++......... ....++
T Consensus 158 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (353)
T 3vgz_A 158 SGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINIS 237 (353)
T ss_dssp EEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEE
T ss_pred EecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEE
Confidence 554568899999999999998888677778999999999999999999999999999887665554311 123468
Q ss_pred ECCCCCEEEEEE-cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeee
Q psy16316 156 FDPEGLIFGVGV-NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTL 233 (335)
Q Consensus 156 ~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~ 233 (335)
++|+++.+.++. .++.|.+||+.+.. ....+.. .. ...++|+|++++++++. .++.|.+||+.+++.+..+
T Consensus 238 ~s~dg~~l~~~~~~~~~v~~~d~~~~~--~~~~~~~--~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 238 LDTARQRAFITDSKAAEVLVVDTRNGN--ILAKVAA--PE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp EETTTTEEEEEESSSSEEEEEETTTCC--EEEEEEC--SS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCc--EEEEEEc--CC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 999998665554 45899999997632 2222221 11 14589999999777666 6899999999999887766
Q ss_pred cccccCCCCceEEEEcCCCcEEEEEeCCC
Q psy16316 234 AGFLNNKGCPLEASFTPDSKYVISGSTDG 262 (335)
Q Consensus 234 ~~~~~~~~~v~~~~~sp~~~~l~tgs~dg 262 (335)
.. ...+..++|+|+|++|+.+..++
T Consensus 311 ~~----~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 311 DT----PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EC----CSEEEEEEECTTSCEEEEEEECC
T ss_pred ec----CCCCCeEEEcCCCCEEEEEEccc
Confidence 43 23467899999999776666554
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=2.9e-20 Score=180.35 Aligned_cols=279 Identities=13% Similarity=0.117 Sum_probs=185.2
Q ss_pred EEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccc---cceEEEEecCCCeeEEeec-------CCCCeEEEEEcC
Q psy16316 26 SIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY---GVDLIRFTHAKQAAIHAST-------KIDDTVRYLSLH 95 (335)
Q Consensus 26 ~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------~~d~~i~~~~~~ 95 (335)
.+.|+|||++++++ .|++|++||+.+++....+..+.. .+..++|+|++...++++. +.++.+++||+.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 78999999766665 599999999999887665544433 4889999999887665554 236899999999
Q ss_pred CCceE--eeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC-------------------CcceE
Q psy16316 96 DNKYI--RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG-------------------SRPIA 154 (335)
Q Consensus 96 ~~~~~--~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-------------------~~~~~ 154 (335)
+++.+ ..+ ...+.+++|+|+|+.|+.++ |+.|++||+.++....+..... ....+
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence 98763 222 25688999999999999985 8899999998876543221110 11367
Q ss_pred EECCCCCEEEEEEcCC----------------------------------eEEEEEccCCCCCceeeEEe---ccCCCcc
Q psy16316 155 AFDPEGLIFGVGVNSD----------------------------------TIKLYDVRSFDKGPFSNFKF---AAEKECD 197 (335)
Q Consensus 155 ~~~~~~~~~~~~~~d~----------------------------------~v~iwd~~~~~~~~~~~~~~---~~~~~~~ 197 (335)
.|+|+|+.++.++.|. .+.+||+.+........+.. ...+...
T Consensus 175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence 8999999999887552 78889886521100001100 0123334
Q ss_pred ceEEEEccCCCEEEEEeCC----CeEEEEE----CCCCeeeeeec-ccccCCCCce-----EEEEcCCCcEEE--EEeCC
Q psy16316 198 WTGIKFSADGKYILISTNG----SIIRTFD----AYNGQCLQTLA-GFLNNKGCPL-----EASFTPDSKYVI--SGSTD 261 (335)
Q Consensus 198 ~~~~~~s~~~~~l~~~~~~----~~i~i~d----~~~~~~~~~~~-~~~~~~~~v~-----~~~~sp~~~~l~--tgs~d 261 (335)
+..++|+||++++++.... ..|++|| +.++++...+. ....+...+. .+.|+|||+.|+ +...+
T Consensus 255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 334 (719)
T 1z68_A 255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD 334 (719)
T ss_dssp EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC
Confidence 6789999998776664432 2488999 88877654441 0011222333 678999999554 45455
Q ss_pred C--cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee-------ceeEEecccc
Q psy16316 262 G--RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC-------TNLAFWIPTY 312 (335)
Q Consensus 262 g--~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~-------~~~~~w~~~~ 312 (335)
| .|++|+...+.. ..+. .+...+..+.++ ++..++... +..++|..+.
T Consensus 335 g~~~l~~~~~~~~~~-~~lt-~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 335 GYKHIHYIKDTVENA-IQIT-SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp SCEEEEEESSCSTTC-EECS-CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred CceEEEEEECCCCce-Eecc-cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 5 466677766553 3343 345567888877 776655443 3478997755
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=1.7e-19 Score=164.75 Aligned_cols=204 Identities=7% Similarity=0.075 Sum_probs=147.8
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCc----------cee-----eeecccccceEEEEecCCCeeEEe--e
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGT----------NKR-----TVFSKKYGVDLIRFTHAKQAAIHA--S 82 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~----------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~ 82 (335)
+...++.+++++++.++++++.|+ +++|+..... ... ....+...+..++|++++...+++ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 445688999999999999999998 8998764210 000 011234468899999886543322 7
Q ss_pred cCCCCeEEEEEcCCC--------c---eEeeecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCCCceeEE-EecC
Q psy16316 83 TKIDDTVRYLSLHDN--------K---YIRYFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSPNCQGIM-HVSG 149 (335)
Q Consensus 83 ~~~d~~i~~~~~~~~--------~---~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~ 149 (335)
++.|+.|++||+.+. + .++.+.+|...|.+++|+|+ +++|++++.|++|++||++++...... .+..
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~ 193 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV 193 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence 788999999998754 1 25667889999999999998 789999999999999999987543222 2234
Q ss_pred CcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEecc----CCCccceEEEEccCCCEEEEEe-CC------Ce
Q psy16316 150 SRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA----EKECDWTGIKFSADGKYILIST-NG------SI 218 (335)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~l~~~~-~~------~~ 218 (335)
.+..++|+|+|+++++|+.|++|++||++. . ....+.... ++...+.+++|++++.++++.+ .+ ..
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~--~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~ 270 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-Q--EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD 270 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTC-C--EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccCC-c--ccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence 566789999999999999999999999872 1 111111111 1223678899999988876543 33 24
Q ss_pred EEEEECCCC
Q psy16316 219 IRTFDAYNG 227 (335)
Q Consensus 219 i~i~d~~~~ 227 (335)
+++|++.+.
T Consensus 271 v~i~~l~~~ 279 (434)
T 2oit_A 271 VVMALLPKK 279 (434)
T ss_dssp EEEEECCCT
T ss_pred eEEEEeccC
Confidence 899999864
No 159
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.85 E-value=3.8e-18 Score=152.08 Aligned_cols=276 Identities=10% Similarity=0.088 Sum_probs=190.7
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEec----------CCCeEEEEEccCCcceeeeecc------cccceEEEEec
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCS----------EDDQIVIYDCELGTNKRTVFSK------KYGVDLIRFTH 73 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs----------~Dg~i~lwd~~~~~~~~~~~~~------~~~~~~~~~~~ 73 (335)
..++...+..+..+ .+.|+|||++|++++ .|++|.+||..+.+....+... ......+++++
T Consensus 40 t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp 117 (361)
T 2oiz_A 40 NGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT 117 (361)
T ss_dssp TCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT
T ss_pred CCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC
Confidence 34555667666665 899999999998886 3778999999988877766432 23466788999
Q ss_pred CCCeeEEeecCCCCeEEEEEcCCCceEee-ecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCC-CCceeEEE----
Q psy16316 74 AKQAAIHASTKIDDTVRYLSLHDNKYIRY-FPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRS-PNCQGIMH---- 146 (335)
Q Consensus 74 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~-~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~-~~~~~~~~---- 146 (335)
++...+.+....++.|.+||+.+++.+.. +.. .....+.+.|++ ..+++.+.||.+.+|++.. ++.....+
T Consensus 118 dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~ 195 (361)
T 2oiz_A 118 DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA--AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQM 195 (361)
T ss_dssp TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG--TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCC
T ss_pred CCCEEEEECCCCCCeEEEEECCCCcEEEEEecC--CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccce
Confidence 88776665544478999999999988877 652 222345677875 6788999999999999865 43331111
Q ss_pred --ecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEecc----C---CCccceEEEEccCCCEEEEEeC--
Q psy16316 147 --VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA----E---KECDWTGIKFSADGKYILISTN-- 215 (335)
Q Consensus 147 --~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~----~---~~~~~~~~~~s~~~~~l~~~~~-- 215 (335)
.......+...+++..++..+.++.+.++|+............... . .......++|+|+++.++++..
T Consensus 196 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~ 275 (361)
T 2oiz_A 196 FSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPD 275 (361)
T ss_dssp SCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESS
T ss_pred EcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccC
Confidence 0000001123355666666677889999998642211111111000 0 0011123789999998887643
Q ss_pred ---------CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC--eeEEEeCCCCCC
Q psy16316 216 ---------GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG--FKVCVLDADHPS 284 (335)
Q Consensus 216 ---------~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~--~~~~~~~~~h~~ 284 (335)
...|.+||+.+++.+.++..+. +..++|+|||++|++++. +.|.+||..++ +.+..+. .+..
T Consensus 276 ~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~-~~G~ 348 (361)
T 2oiz_A 276 GKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIE-GAAE 348 (361)
T ss_dssp CCTTCTTCCCSEEEEEETTTTEEEEEEECTT-----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEET-TSCS
T ss_pred CCcccccCCCceEEEEECCCCcEEEEEecCC-----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEec-cCCC
Confidence 3489999999999888876532 778999999999999887 99999999999 8777763 2445
Q ss_pred CeEEEEeCCCCc
Q psy16316 285 PVQTIQFNPKFN 296 (335)
Q Consensus 285 ~v~~v~~sp~~~ 296 (335)
.-..++|+|+|.
T Consensus 349 ~P~~~~~~p~G~ 360 (361)
T 2oiz_A 349 ASLQVQFHPVGG 360 (361)
T ss_dssp SEEEEEECCCSC
T ss_pred CcEEEEecCCCC
Confidence 567899999985
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=6.9e-20 Score=167.27 Aligned_cols=202 Identities=12% Similarity=0.167 Sum_probs=148.6
Q ss_pred CCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCC----------c------eeEEEecCCcceEEECCCCCEEE----EE
Q psy16316 107 TKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN----------C------QGIMHVSGSRPIAAFDPEGLIFG----VG 166 (335)
Q Consensus 107 ~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~----------~------~~~~~~~~~~~~~~~~~~~~~~~----~~ 166 (335)
...++.+++++++.++++++.|+ +++|+..... . ...+.....+..++|+|++++++ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 45688999999999999999988 8998753110 0 01122334466789999999999 67
Q ss_pred EcCCeEEEEEccCC-----CC-CceeeEEeccCCCccceEEEEccC-CCEEEEEeCCCeEEEEECCCCeeeeeecccccC
Q psy16316 167 VNSDTIKLYDVRSF-----DK-GPFSNFKFAAEKECDWTGIKFSAD-GKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN 239 (335)
Q Consensus 167 ~~d~~v~iwd~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 239 (335)
+.|++|++||+++. .. .+.........+...+.+++|+|+ +.+|++++.|+.|++||++++.......+ +
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~---~ 191 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP---S 191 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC---G
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC---C
Confidence 78999999998753 11 222233434445667899999998 88999999999999999999866544433 3
Q ss_pred CCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC------CCCCCeEEEEeCCCCcEEEeee-c--------e
Q psy16316 240 KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA------DHPSPVQTIQFNPKFNMMASAC-T--------N 304 (335)
Q Consensus 240 ~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~------~h~~~v~~v~~sp~~~~~~s~~-~--------~ 304 (335)
...+.+++|+|+|++|++|+.||+|++||.. +.....+.. .|...|.+++|+|++.++++.+ + .
T Consensus 192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~ 270 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD 270 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence 4568899999999999999999999999987 444433321 2334899999999988886443 2 2
Q ss_pred eEEeccccc
Q psy16316 305 LAFWIPTYL 313 (335)
Q Consensus 305 ~~~w~~~~~ 313 (335)
+++|.++..
T Consensus 271 v~i~~l~~~ 279 (434)
T 2oit_A 271 VVMALLPKK 279 (434)
T ss_dssp EEEEECCCT
T ss_pred eEEEEeccC
Confidence 788876544
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.84 E-value=1.4e-19 Score=176.22 Aligned_cols=263 Identities=9% Similarity=0.082 Sum_probs=175.3
Q ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeeccccc---c--eEEEEecCCCeeEEeecC-------CCCeEE
Q psy16316 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG---V--DLIRFTHAKQAAIHASTK-------IDDTVR 90 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~-------~d~~i~ 90 (335)
....+.|+|||++++++ |++|++||+.++++...+..+... + ..+.|+|++...++.+.. ..+.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 45689999999999997 999999999999876665555432 2 337889987765554431 115667
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec-------------------CCc
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS-------------------GSR 151 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-------------------~~~ 151 (335)
+||+.+++.. .+..|...+...+|+|+|+.|+.+ .|+.|++||+.++....+.... +..
T Consensus 96 ~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 96 IYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp EEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred EEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence 9999998754 466788899999999999999988 4789999999877654322111 111
Q ss_pred ceEEECCCCCEEEEEEcCC-eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCC---C
Q psy16316 152 PIAAFDPEGLIFGVGVNSD-TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYN---G 227 (335)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~---~ 227 (335)
....|+|||+.++..+.|. .+.+|++....... ........+++.+.|.. .....|++||+.+ +
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~--------~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~ 241 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES--------LQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSV 241 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT--------CSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCSS
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCC--------CCCCcceeecCCCCcCc----CCeeEEEEEECCCCCCC
Confidence 2368999999888876554 48888764321110 01112234666666642 1223689999998 7
Q ss_pred e--eeeeeccc---ccCCCCceEEEEcCCCcEEEEEe----CCCcEEEEECCCCe-------eEEEeCCCCCCCeE----
Q psy16316 228 Q--CLQTLAGF---LNNKGCPLEASFTPDSKYVISGS----TDGRIHIWNAEKGF-------KVCVLDADHPSPVQ---- 287 (335)
Q Consensus 228 ~--~~~~~~~~---~~~~~~v~~~~~sp~~~~l~tgs----~dg~v~iwd~~~~~-------~~~~~~~~h~~~v~---- 287 (335)
+ ....+... ..+...+..++|+|||+.++... .+..|++||..++. ....+...|...|.
T Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~ 321 (740)
T 4a5s_A 242 TNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 321 (740)
T ss_dssp SCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC
T ss_pred CcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcC
Confidence 3 22233211 12444577899999999766543 23479999988775 11111234666665
Q ss_pred -EEEeCCCCcEEE-ee
Q psy16316 288 -TIQFNPKFNMMA-SA 301 (335)
Q Consensus 288 -~v~~sp~~~~~~-s~ 301 (335)
.++|+|+|+.++ ..
T Consensus 322 ~~p~fspDG~~l~~~~ 337 (740)
T 4a5s_A 322 SEPHFTLDGNSFYKII 337 (740)
T ss_dssp CCCEECTTSSEEEEEE
T ss_pred CCceEcCCCCEEEEEE
Confidence 789999998766 44
No 162
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.83 E-value=5.3e-18 Score=162.90 Aligned_cols=293 Identities=9% Similarity=-0.005 Sum_probs=191.1
Q ss_pred eeeccCCccEEEEEECCCCCEEEEe--cCCCeEEEEEccCCcceeeeecccccce---------EEEEe--cCCCeeEEe
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISC--SEDDQIVIYDCELGTNKRTVFSKKYGVD---------LIRFT--HAKQAAIHA 81 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasg--s~Dg~i~lwd~~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~~~~ 81 (335)
+.+.+|...|..++|++++-++++. +.|+...||....+...+.+..+...+. ...|+ |++...++.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3467899999999999998888888 7789999999755555555555544444 55565 666551334
Q ss_pred ecCCCCeEEEEEcC--CCceEeeecC-----CCCCeEEEEECCCCCEEEEeeCC----------CcEEEeecCC------
Q psy16316 82 STKIDDTVRYLSLH--DNKYIRYFPG-----HTKKVNSLCLSPIDDTFISGSYD----------KTVRLWDLRS------ 138 (335)
Q Consensus 82 ~~~~d~~i~~~~~~--~~~~~~~~~~-----H~~~V~~~~~~~~~~~l~s~s~D----------~~i~vWd~~~------ 138 (335)
+...+..|.++++. .....+.+.. |...+.+++|+|+|+.|++++.| ..|++||+.+
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 44345667777765 2033444554 67789999999999999999887 6899999987
Q ss_pred CCceeEE-EecCCcceEEECCCCCEEEEEEcC--------CeEEEEEcc-CCCCCceeeEEeccCCCccceEEEEccCCC
Q psy16316 139 PNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNS--------DTIKLYDVR-SFDKGPFSNFKFAAEKECDWTGIKFSADGK 208 (335)
Q Consensus 139 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d--------~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 208 (335)
+....+. ..........|+|+|+.++.++.+ ..|.+||+. +........+ .......+..++|+|||+
T Consensus 177 ~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l--~~~~~~~~~~~~~spdg~ 254 (662)
T 3azo_A 177 SAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL--LGGPEEAIAQAEWAPDGS 254 (662)
T ss_dssp GGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE--EEETTBCEEEEEECTTSC
T ss_pred CceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe--CCCCCceEcceEECCCCe
Confidence 4433222 112223346799999998877654 379999987 2210011111 122234567899999999
Q ss_pred EEEEEeCCC--eEEEEECCCCeeeeeecccccCCC-----CceEEEEcCCCcEEEEEeCCCcEEEE--ECCCCeeEEEeC
Q psy16316 209 YILISTNGS--IIRTFDAYNGQCLQTLAGFLNNKG-----CPLEASFTPDSKYVISGSTDGRIHIW--NAEKGFKVCVLD 279 (335)
Q Consensus 209 ~l~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~~-----~v~~~~~sp~~~~l~tgs~dg~v~iw--d~~~~~~~~~~~ 279 (335)
+++++..++ .|++||+.+++.......+..... .+..++|+|+++++++++. +.++|| |...+. ...+.
T Consensus 255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~ 332 (662)
T 3azo_A 255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAA 332 (662)
T ss_dssp EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECC
T ss_pred EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEec
Confidence 777777777 677777767664433222111100 0346899999999999999 999999 554454 44453
Q ss_pred CCCCCCeEEE-EeCCCCcEEEeee--ceeEEecccc
Q psy16316 280 ADHPSPVQTI-QFNPKFNMMASAC--TNLAFWIPTY 312 (335)
Q Consensus 280 ~~h~~~v~~v-~~sp~~~~~~s~~--~~~~~w~~~~ 312 (335)
.|.+.+..+ +++++.-++++++ ....+|..+.
T Consensus 333 -~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~ 367 (662)
T 3azo_A 333 -GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDT 367 (662)
T ss_dssp -SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred -CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence 466777777 5555444444444 2356665543
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=6.7e-18 Score=148.76 Aligned_cols=223 Identities=12% Similarity=0.082 Sum_probs=159.7
Q ss_pred eeEEeecCCCCeEEEEEcCCCceEeeecCCC-CCeEEEEECCCCCEE-EEeeCCCcEEEeecCCCCceeEEEecCC----
Q psy16316 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHT-KKVNSLCLSPIDDTF-ISGSYDKTVRLWDLRSPNCQGIMHVSGS---- 150 (335)
Q Consensus 77 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~-~~V~~~~~~~~~~~l-~s~s~D~~i~vWd~~~~~~~~~~~~~~~---- 150 (335)
..++++++.++.|.+||+.+++.++.+..+. ..+..++|+|+++.+ +++..++.|.+||+.+++....+.....
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~ 90 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV 90 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccc
Confidence 3455666679999999999999888877543 257899999999855 5666799999999998776655543221
Q ss_pred ---cceEEECCCCCEEEEEEcC------------CeEEEEEccCCCCCc-eeeEEeccCCCccceEEEEccCCCEEEEEe
Q psy16316 151 ---RPIAAFDPEGLIFGVGVNS------------DTIKLYDVRSFDKGP-FSNFKFAAEKECDWTGIKFSADGKYILIST 214 (335)
Q Consensus 151 ---~~~~~~~~~~~~~~~~~~d------------~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 214 (335)
...+.++|+|++++++..+ +.|.+||+.+..... ..... ....+.+++|+|+++ +++++
T Consensus 91 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~s~dg~-l~~~~ 165 (349)
T 1jmx_B 91 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP----MPRQVYLMRAADDGS-LYVAG 165 (349)
T ss_dssp EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE----CCSSCCCEEECTTSC-EEEES
T ss_pred cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc----CCCcccceeECCCCc-EEEcc
Confidence 3567899999998888765 899999987632111 11111 112356789999999 55553
Q ss_pred CCCeEEEEECCCCeeeeeeccccc--------------------------------------------------------
Q psy16316 215 NGSIIRTFDAYNGQCLQTLAGFLN-------------------------------------------------------- 238 (335)
Q Consensus 215 ~~~~i~i~d~~~~~~~~~~~~~~~-------------------------------------------------------- 238 (335)
+.|++||+.+++....+.....
T Consensus 166 --~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
T 1jmx_B 166 --PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG 243 (349)
T ss_dssp --SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred --CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCC
Confidence 3499999998887665532210
Q ss_pred ---------CCCCceEEEEcC-CCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeE
Q psy16316 239 ---------NKGCPLEASFTP-DSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC--TNLA 306 (335)
Q Consensus 239 ---------~~~~v~~~~~sp-~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~ 306 (335)
....+..++|+| ++++++++ ++.|++||+.++.....+..+ ..+..++|+|+++++++++ +.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~v~ 319 (349)
T 1jmx_B 244 KTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKKGDKLYLGGTFNDLA 319 (349)
T ss_dssp CEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS--SCCCEEEECSSSSCEEEESBSSEEE
T ss_pred cEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC--CCccceEECCCCCEEEEecCCCeEE
Confidence 001344667889 99999888 889999999998876666533 3567999999998776654 5688
Q ss_pred Eecc
Q psy16316 307 FWIP 310 (335)
Q Consensus 307 ~w~~ 310 (335)
+|.+
T Consensus 320 v~d~ 323 (349)
T 1jmx_B 320 VFNP 323 (349)
T ss_dssp EEET
T ss_pred EEec
Confidence 8865
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.82 E-value=1.2e-18 Score=156.42 Aligned_cols=280 Identities=9% Similarity=-0.004 Sum_probs=179.5
Q ss_pred EEEEEECCCCCEEEEecCC---CeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE
Q psy16316 24 ITSIDYSADGLLLISCSED---DQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI 100 (335)
Q Consensus 24 V~~v~~s~~g~~lasgs~D---g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 100 (335)
+..+.|+|||++|+..+.+ ..|.+||+++++..............+.|++++...++.+ .++.+.+|++.+++..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~--~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVK--NELNLMKVDLETLEEQ 115 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEE--TTTEEEEEETTTCCEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEE--cCCcEEEEECCCCCcE
Confidence 7788999999998776543 4788889988765433222222233367888876554443 4568999999988776
Q ss_pred eeecCCCCCeEE-------------------EEECCCCCEEEEe-----eCCCcEEEeecCCCCceeEEEecCCcceEEE
Q psy16316 101 RYFPGHTKKVNS-------------------LCLSPIDDTFISG-----SYDKTVRLWDLRSPNCQGIMHVSGSRPIAAF 156 (335)
Q Consensus 101 ~~~~~H~~~V~~-------------------~~~~~~~~~l~s~-----s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~ 156 (335)
..+..+...... +.++|+++.++.+ ..+..|.+||+.+++...............|
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~ 195 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIY 195 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceE
Confidence 666655443222 3467777765544 4677899999998876655544444556788
Q ss_pred CC-CCCEEEEEEcC------CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-----CeEEEEEC
Q psy16316 157 DP-EGLIFGVGVNS------DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-----SIIRTFDA 224 (335)
Q Consensus 157 ~~-~~~~~~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-----~~i~i~d~ 224 (335)
+| ++..++..+.+ ..|.+||+.... ...+.. ......+..++|+|+|++|+..+.+ +.|++||+
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN---VRKIKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP 271 (396)
T ss_dssp ETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---CEESSC-CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred CCCCCCEEEEEecCCCCCCCceEEEEECCCCc---eeEeec-cCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC
Confidence 99 78766665543 357778875421 111110 1112235678999999987766443 44999999
Q ss_pred CCCeeeeeecccccCCCCceEEEEcC-CCcEEEEEe----------------CCCcEEEEECCCCeeEEEeCCCCCC---
Q psy16316 225 YNGQCLQTLAGFLNNKGCPLEASFTP-DSKYVISGS----------------TDGRIHIWNAEKGFKVCVLDADHPS--- 284 (335)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~tgs----------------~dg~v~iwd~~~~~~~~~~~~~h~~--- 284 (335)
.+++... +.... . .. +.|+| ||+++++++ .+..|++||..++...... . +..
T Consensus 272 ~~g~~~~-l~~~~---~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~-~-~~~~~~ 343 (396)
T 3c5m_A 272 ETLENEE-VMVMP---P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLC-K-HSTSWD 343 (396)
T ss_dssp TTCCEEE-EEECC---S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEE-E-CCCCCC
T ss_pred CCCCeEE-eeeCC---C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEcc-C-CCCccc
Confidence 8876533 22111 1 12 78999 999888765 3478999999877543322 1 332
Q ss_pred --------CeEEEEeCCCCcEEEeee---ceeEEeccccccccc
Q psy16316 285 --------PVQTIQFNPKFNMMASAC---TNLAFWIPTYLSNHQ 317 (335)
Q Consensus 285 --------~v~~v~~sp~~~~~~s~~---~~~~~w~~~~~~~~~ 317 (335)
.+..++|+|+|+.++.++ +...+|..+.....+
T Consensus 344 ~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 344 VLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp CBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred cccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 256789999998877664 356788766554443
No 165
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.81 E-value=4.5e-17 Score=143.19 Aligned_cols=245 Identities=11% Similarity=0.102 Sum_probs=174.1
Q ss_pred CCccEEEEEECCCCCEEEEecCC------------------------CeEEEEEccCCcceeeeec-ccccceEEEEecC
Q psy16316 20 NTDKITSIDYSADGLLLISCSED------------------------DQIVIYDCELGTNKRTVFS-KKYGVDLIRFTHA 74 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~D------------------------g~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~ 74 (335)
--+.|.+|+++|+|+++++.+.+ ++|.+||.++++....... +-..+..+++.++
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 45779999999999999998887 5799999988887654432 2235677888776
Q ss_pred CCeeEEeecCCCCeEEEEEcCCCc-eEeee---------cCCCCCeEEEEECC-CCCEEEEee-CCCcEEEeecCCCCce
Q psy16316 75 KQAAIHASTKIDDTVRYLSLHDNK-YIRYF---------PGHTKKVNSLCLSP-IDDTFISGS-YDKTVRLWDLRSPNCQ 142 (335)
Q Consensus 75 ~~~~~~~~~~~d~~i~~~~~~~~~-~~~~~---------~~H~~~V~~~~~~~-~~~~l~s~s-~D~~i~vWd~~~~~~~ 142 (335)
+. ++++...++.|++|+..... .+..+ .++......++++| +++++++.+ .++.|++||. .+...
T Consensus 102 g~--l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~ 178 (329)
T 3fvz_A 102 GN--YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFV 178 (329)
T ss_dssp SC--EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEE
T ss_pred CC--EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEE
Confidence 55 55666668899999986542 44444 35566789999999 788888887 6999999994 45544
Q ss_pred eEEEecCC-----------cceEEECCC-CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc-----
Q psy16316 143 GIMHVSGS-----------RPIAAFDPE-GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA----- 205 (335)
Q Consensus 143 ~~~~~~~~-----------~~~~~~~~~-~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----- 205 (335)
..+...+. ...++++|+ +.++++...++.|++||..+.. ....+.. .........++++|
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~--~~~~~~~-~~~~~~~~~~~~~pg~~~~ 255 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE--FVREIKH-ASFGRNVFAISYIPGFLFA 255 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--EEEEECC-TTTTTCEEEEEEETTEEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc--EEEEEec-cccCCCcceeeecCCEEEE
Confidence 44422111 235788898 8888888889999999987321 1222211 12223456788888
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 206 -DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 206 -~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
+++..++...+..|++|+..+++.+..+.....+...+..++++|+|.++++...+++|++|+..
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 23222222334589999999998887764323344567899999999999999999999999974
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=2.1e-16 Score=135.83 Aligned_cols=244 Identities=12% Similarity=0.162 Sum_probs=169.9
Q ss_pred ccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeec------ccccceEEEEecCCCeeEEeecCCCCeEEE
Q psy16316 18 RENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS------KKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 91 (335)
.+|-..+.+++++++|.++++.+.++.|++||.+ ++....+.. +...+..+++.......+++....++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3556789999999999999999999999999987 544444321 123456677743333333333233789999
Q ss_pred EEcCCCceEeeec-CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec---CCcceEEECCCCCEEEEEE
Q psy16316 92 LSLHDNKYIRYFP-GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS---GSRPIAAFDPEGLIFGVGV 167 (335)
Q Consensus 92 ~~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 167 (335)
|+ .+++.+..+. .+...+.++++.|+++++++...++.|.+||.. ++....+... .....++++++++++++..
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence 99 5666666664 345678999999999988888889999999964 3333333221 1234578999999888888
Q ss_pred cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCC-eEEEEECCCCeeeeeecccccCCCCceEE
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS-IIRTFDAYNGQCLQTLAGFLNNKGCPLEA 246 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~-~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 246 (335)
.++.|.+||... .....+.. ........+++++|+|+++++...++ .|.+||. +++.+..+..+.. ...+..+
T Consensus 183 ~~~~i~~~~~~g---~~~~~~~~-~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~-~~~~~~i 256 (286)
T 1q7f_A 183 RAHCVKVFNYEG---QYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVK-HAQCFDV 256 (286)
T ss_dssp GGTEEEEEETTC---CEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSC-CSCEEEE
T ss_pred CCCEEEEEcCCC---CEEEEEcc-CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCC-CCcceeE
Confidence 889999999743 11221111 11113457899999999888877775 9999995 4556666644322 2246789
Q ss_pred EEcCCCcEEEEEeCCCcEEEEECCC
Q psy16316 247 SFTPDSKYVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 247 ~~sp~~~~l~tgs~dg~v~iwd~~~ 271 (335)
+++|+|+++++ +.|++|++|+...
T Consensus 257 ~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 257 ALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EECCCCcEEEE-CCCCeEEEEEccc
Confidence 99999988887 5799999998754
No 167
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=4.3e-18 Score=161.22 Aligned_cols=234 Identities=10% Similarity=0.068 Sum_probs=168.4
Q ss_pred eeccCC-ccEEEEEECCCCCEEEEecC---CCeEEEEEccC--CcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 16 LFRENT-DKITSIDYSADGLLLISCSE---DDQIVIYDCEL--GTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 16 ~~~~h~-~~V~~v~~s~~g~~lasgs~---Dg~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
.+..|. ..|..+.|+|| +++++++. +...+||.+.. ......+. ...+....+|+++++..+++++..++..
T Consensus 58 ~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~ 135 (582)
T 3o4h_A 58 KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLE-AVKPMRILSGVDTGEAVVFTGATEDRVA 135 (582)
T ss_dssp ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECT-TSCSBEEEEEEECSSCEEEEEECSSCEE
T ss_pred eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcccccc-CCCCceeeeeCCCCCeEEEEecCCCCce
Confidence 344555 68999999999 88887775 56677776654 32222222 2223456688998887777777666655
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCC----CcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEE
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD----KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D----~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (335)
+||+.+++..+....+. .+++|+|+|+.|++++.| +.|++||+.+++........+......|+|||+.+++
T Consensus 136 -l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~ 211 (582)
T 3o4h_A 136 -LYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAG 211 (582)
T ss_dssp -EEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEE
T ss_pred -EEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEE
Confidence 99999887766555433 789999999999998888 8899999988876644333344556789999999998
Q ss_pred EEcCC--eEEEEEccCCCCCceeeEEeccCCCccceEEE--------EccCCCEEEEEeCCCeEEEEECCCCeeeeeecc
Q psy16316 166 GVNSD--TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIK--------FSADGKYILISTNGSIIRTFDAYNGQCLQTLAG 235 (335)
Q Consensus 166 ~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 235 (335)
+..++ .|.+||+.+.. .. ....+...+..++ |+|||..+++++.++.+++|++ ++..+..
T Consensus 212 ~~~~~~~~i~~~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-- 281 (582)
T 3o4h_A 212 LETAREARLVTVDPRDGS---VE---DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-- 281 (582)
T ss_dssp EECSSCEEEEEECTTTCC---EE---ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC--
T ss_pred ccCCCeeEEEEEcCCCCc---EE---EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC--
Confidence 88888 89999987532 11 2222333334455 9999988888999999999999 6654422
Q ss_pred cccCCCCceEEEEcCCCcEEEEEeCCCc---EEEEECC
Q psy16316 236 FLNNKGCPLEASFTPDSKYVISGSTDGR---IHIWNAE 270 (335)
Q Consensus 236 ~~~~~~~v~~~~~sp~~~~l~tgs~dg~---v~iwd~~ 270 (335)
...+..++|+ +++++++++.+.. +++||..
T Consensus 282 ----~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 282 ----QGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp ----SSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred ----CCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 2346678999 9999999888754 6777654
No 168
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.79 E-value=7.5e-19 Score=170.44 Aligned_cols=238 Identities=10% Similarity=0.032 Sum_probs=160.7
Q ss_pred EEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCC---CeEEEEECCCCCEEEEeeC---------CCcEEEee
Q psy16316 68 LIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTK---KVNSLCLSPIDDTFISGSY---------DKTVRLWD 135 (335)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~---~V~~~~~~~~~~~l~s~s~---------D~~i~vWd 135 (335)
.++|++++ .+++++ .|+.+++||+.+++....+.+|.. .|.+++|+|+|++|++++. |+.|++||
T Consensus 20 ~~~~s~dg--~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISGQ--EYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSSS--EEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCC--eEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 56787776 344444 489999999999998888876654 4899999999999999876 79999999
Q ss_pred cCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCC----------------ccce
Q psy16316 136 LRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKE----------------CDWT 199 (335)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~----------------~~~~ 199 (335)
+.+++...............|+|+|+.++.+. ++.|++||+.+.... .+....... ....
T Consensus 97 ~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~---~l~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 97 LSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF---QITFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp TTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE---ECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred CCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE---EEecCCCcCCeEcccccceeeeecccCcc
Confidence 98876521111223455689999999998885 689999998753321 111000000 1114
Q ss_pred EEEEccCCCEEEEEeCCC----------------------------------eEEEEECCCCeee--eeec---ccccCC
Q psy16316 200 GIKFSADGKYILISTNGS----------------------------------IIRTFDAYNGQCL--QTLA---GFLNNK 240 (335)
Q Consensus 200 ~~~~s~~~~~l~~~~~~~----------------------------------~i~i~d~~~~~~~--~~~~---~~~~~~ 240 (335)
+++|||||++|+.++.+. .|++||+.+++.. ..+. ....+.
T Consensus 173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 799999999999876442 7889999887642 1111 112244
Q ss_pred CCceEEEEcCCCcEEEEEeCC----CcEEEEE----CCCCeeEEEeC---CCCCCCeE-----EEEeCCCCcEEEe--e-
Q psy16316 241 GCPLEASFTPDSKYVISGSTD----GRIHIWN----AEKGFKVCVLD---ADHPSPVQ-----TIQFNPKFNMMAS--A- 301 (335)
Q Consensus 241 ~~v~~~~~sp~~~~l~tgs~d----g~v~iwd----~~~~~~~~~~~---~~h~~~v~-----~v~~sp~~~~~~s--~- 301 (335)
..+..++|+||++++++.... ..|.+|| ..++....... ..|.+.+. .++|+|+|+.++. .
T Consensus 253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 332 (719)
T 1z68_A 253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSD 332 (719)
T ss_dssp EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEEC
T ss_pred ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEc
Confidence 456789999998887774432 2488899 76654332221 35677777 8999999986543 2
Q ss_pred -eceeEEecccc
Q psy16316 302 -CTNLAFWIPTY 312 (335)
Q Consensus 302 -~~~~~~w~~~~ 312 (335)
++..++|..+.
T Consensus 333 ~~g~~~l~~~~~ 344 (719)
T 1z68_A 333 KDGYKHIHYIKD 344 (719)
T ss_dssp TTSCEEEEEESS
T ss_pred cCCceEEEEEEC
Confidence 23445555444
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=2e-16 Score=141.11 Aligned_cols=269 Identities=10% Similarity=0.033 Sum_probs=168.5
Q ss_pred EEEecC--CCeEEEEEc--cCCcceee--ee-cccccceEEEEecCCCeeEEeecCCCCeEEEEEcC-CCceEeeec--C
Q psy16316 36 LISCSE--DDQIVIYDC--ELGTNKRT--VF-SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH-DNKYIRYFP--G 105 (335)
Q Consensus 36 lasgs~--Dg~i~lwd~--~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~--~ 105 (335)
|+.|+. ++.|.+|++ ++++.... .. .....+..+++++++...+.+. .+ .+.+|++. +++...... .
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~--~~-~v~~~~~~~~g~~~~~~~~~~ 81 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA--MK-KWSSFAVKSPTEIVHEASHPI 81 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE--BT-EEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEc--cc-eEEEEEECCCCCEEEeeEeec
Confidence 344443 356777765 34433211 11 1223567889998876544333 34 89999997 776654332 1
Q ss_pred CCCCeEEEEECCCCCE--EEEee-------------CCCcEEEeecCC-CCceeEEE-----ecCCcceEEECCCCCEEE
Q psy16316 106 HTKKVNSLCLSPIDDT--FISGS-------------YDKTVRLWDLRS-PNCQGIMH-----VSGSRPIAAFDPEGLIFG 164 (335)
Q Consensus 106 H~~~V~~~~~~~~~~~--l~s~s-------------~D~~i~vWd~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 164 (335)
+ +.+.+++|+|+++. +++++ .++++++|++.. ++...... .......+.++|+|++++
T Consensus 82 ~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~ 160 (365)
T 1jof_A 82 G-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp C-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred C-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEE
Confidence 1 23567899999984 55653 699999999974 55433332 122345678999999777
Q ss_pred EEE-cCCeEEEEEcc-CCCCCceeeEE-eccC-CCccceEEEEccCCCEEEEEeC-CCeEEEEECC--CCeeee---eec
Q psy16316 165 VGV-NSDTIKLYDVR-SFDKGPFSNFK-FAAE-KECDWTGIKFSADGKYILISTN-GSIIRTFDAY--NGQCLQ---TLA 234 (335)
Q Consensus 165 ~~~-~d~~v~iwd~~-~~~~~~~~~~~-~~~~-~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~--~~~~~~---~~~ 234 (335)
++. .++.|.+||+. +.. ..... .... +......++|+|+|++++++.. ++.|.+|+.. +++... .+.
T Consensus 161 ~~~~~~~~v~~~~~~~~g~---~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 237 (365)
T 1jof_A 161 SADLTANKLWTHRKLASGE---VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP 237 (365)
T ss_dssp EEETTTTEEEEEEECTTSC---EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred EEcCCCCEEEEEEECCCCC---EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence 665 36799999997 321 21111 1111 1234678999999999988775 6789998764 555321 221
Q ss_pred ccc----cCCC------CceEEE-EcCCCcEEEEEeCCC------cEEEEECC-CCeeEE---EeCCCCCCCeEEEEeCC
Q psy16316 235 GFL----NNKG------CPLEAS-FTPDSKYVISGSTDG------RIHIWNAE-KGFKVC---VLDADHPSPVQTIQFNP 293 (335)
Q Consensus 235 ~~~----~~~~------~v~~~~-~sp~~~~l~tgs~dg------~v~iwd~~-~~~~~~---~~~~~h~~~v~~v~~sp 293 (335)
... .+.. .+..++ |+|||++|++++.+. +|.+|++. ++.... ... .+......++|+|
T Consensus 238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~-~~~~~~~~~a~sp 316 (365)
T 1jof_A 238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP-TPTSGGHSNAVSP 316 (365)
T ss_dssp SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE-CSSCCTTCCCEEE
T ss_pred cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeee-cCCCCcccceecC
Confidence 111 1111 367899 999999887766432 89999986 554332 122 2444566889999
Q ss_pred ---CCcEEEeee---ceeEEecccc
Q psy16316 294 ---KFNMMASAC---TNLAFWIPTY 312 (335)
Q Consensus 294 ---~~~~~~s~~---~~~~~w~~~~ 312 (335)
+|+++++++ +++.+|..+.
T Consensus 317 ~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 317 CPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp CTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CCcCCCEEEEEEcCCCeEEEEEEch
Confidence 899888774 5689997654
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.77 E-value=2.9e-16 Score=137.89 Aligned_cols=268 Identities=13% Similarity=0.157 Sum_probs=180.4
Q ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe
Q psy16316 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 101 (335)
..|.++.|++++..+++.+.++.++.|. ++....+..+...+..++|.+++. +..++..++.|.+||..+++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEISKKGLQLEGLNFDRQGQ--LFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEESSCCCEEEEEECTTSC--EEEEETTTCEEEEECTTTCCEEE
T ss_pred cccceeeecCCccceeEEeecccCcccc---cceeEEEeccCccccCcEECCCCC--EEEEECCCCEEEEEeCCCCcEEE
Confidence 4578899999999888889999999993 344444545555567788876554 55555568899999999887766
Q ss_pred eecCCCCCeEEEEECCCCCEEEEeeCC----CcEEEeecCCCCceeEEE---ecCCcceEEECCCCCEEEEEEc------
Q psy16316 102 YFPGHTKKVNSLCLSPIDDTFISGSYD----KTVRLWDLRSPNCQGIMH---VSGSRPIAAFDPEGLIFGVGVN------ 168 (335)
Q Consensus 102 ~~~~H~~~V~~~~~~~~~~~l~s~s~D----~~i~vWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------ 168 (335)
....+...+.+++++|+++++++...+ +.|.+||..++....... .......+.++|+|+++++...
T Consensus 81 ~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 81 PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 554567889999999999988887776 789999998776543322 1122345688999998877653
Q ss_pred CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEE-eCCCeEEEEECCC-Ceeeeeec----ccccCCCC
Q psy16316 169 SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIS-TNGSIIRTFDAYN-GQCLQTLA----GFLNNKGC 242 (335)
Q Consensus 169 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~~~~i~i~d~~~-~~~~~~~~----~~~~~~~~ 242 (335)
.+.|..+|.... ....+.. ......+++|+|+++.++++ +.++.|++||..+ +.....+. ........
T Consensus 161 ~~~l~~~~~~~~---~~~~~~~---~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~ 234 (333)
T 2dg1_A 161 LGGVYYVSPDFR---TVTPIIQ---NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEG 234 (333)
T ss_dssp CEEEEEECTTSC---CEEEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSE
T ss_pred CceEEEEeCCCC---EEEEeec---CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCC
Confidence 244555554321 1222111 11234679999999876554 4578899999863 33222211 00011134
Q ss_pred ceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCC-----CCCCeEEEEeCCCCcEEEee
Q psy16316 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD-----HPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 243 v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~-----h~~~v~~v~~sp~~~~~~s~ 301 (335)
+..++++++|+++++...++.|.+||. ++.....+... |...+.+++|+|++..|..+
T Consensus 235 ~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~ 297 (333)
T 2dg1_A 235 PDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIIC 297 (333)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred CCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEE
Confidence 667999999999888888899999998 45554444321 22267899999997655433
No 171
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.76 E-value=3.4e-17 Score=146.71 Aligned_cols=256 Identities=14% Similarity=0.089 Sum_probs=158.0
Q ss_pred cceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEE--ecCCCeeEEe--------
Q psy16316 12 KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRF--THAKQAAIHA-------- 81 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------- 81 (335)
++.+...+|...+..+.|+|||++|+.++.++.|++||+++++.......+...+....+ +++....+..
T Consensus 71 ~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~ 150 (388)
T 3pe7_A 71 VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWV 150 (388)
T ss_dssp EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccc
Confidence 344555667766667889999999999999999999999998765544333333333333 4443332211
Q ss_pred ------------ecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECC-CCCEEEEeeCC------CcEEEeecCCCCce
Q psy16316 82 ------------STKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP-IDDTFISGSYD------KTVRLWDLRSPNCQ 142 (335)
Q Consensus 82 ------------~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D------~~i~vWd~~~~~~~ 142 (335)
....+..+.+||+.+++.... ..+...+..+.|+| +++.|+.++.+ ..|.++|+..+...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~ 229 (388)
T 3pe7_A 151 PLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR 229 (388)
T ss_dssp CCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE
T ss_pred cccccchhhhhhccCCcceEEEEECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE
Confidence 123457889999998865444 45677899999999 99988877753 37788887665433
Q ss_pred eEEEecC--CcceEEECCCCCEEEEEEc-CC----eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEE--
Q psy16316 143 GIMHVSG--SRPIAAFDPEGLIFGVGVN-SD----TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIS-- 213 (335)
Q Consensus 143 ~~~~~~~--~~~~~~~~~~~~~~~~~~~-d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-- 213 (335)
.+..... ......|+|+|+.++..+. ++ .|.+||+.+.......................|+|||+.|+..
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 230 KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----
T ss_pred EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEee
Confidence 3222211 1234579999986654332 22 3999999764321111111000000001234799999988864
Q ss_pred -------eCCCeEEEEECCCCeeeeeecccccCC--------CCceEEEEcCCCcEEEEEe-CCCcEEEEEC
Q psy16316 214 -------TNGSIIRTFDAYNGQCLQTLAGFLNNK--------GCPLEASFTPDSKYVISGS-TDGRIHIWNA 269 (335)
Q Consensus 214 -------~~~~~i~i~d~~~~~~~~~~~~~~~~~--------~~v~~~~~sp~~~~l~tgs-~dg~v~iwd~ 269 (335)
..+..|++||+.+++. +.+..+.... ..+..++|+|||+.|+..+ .+|...||.+
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 310 DDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp -------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 4456899999998765 3443332200 0356689999999887666 4677777654
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.73 E-value=1.9e-15 Score=134.55 Aligned_cols=272 Identities=9% Similarity=-0.001 Sum_probs=178.3
Q ss_pred CCCCEEEEe------cCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec--------CCCCeEEEEEcCC
Q psy16316 31 ADGLLLISC------SEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST--------KIDDTVRYLSLHD 96 (335)
Q Consensus 31 ~~g~~lasg------s~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d~~i~~~~~~~ 96 (335)
++++++... ..|++|.+||.++++....+.....+ .+++++++...+.+.. ..++.|.+||+.+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 355555443 24789999999999887766554443 7899998877766542 2467899999999
Q ss_pred CceEeeecCC------CCCeEEEEECCCCCEEEEeeC--CCcEEEeecCCCCceeE-EEecCCcceEEECCCC-CEEEEE
Q psy16316 97 NKYIRYFPGH------TKKVNSLCLSPIDDTFISGSY--DKTVRLWDLRSPNCQGI-MHVSGSRPIAAFDPEG-LIFGVG 166 (335)
Q Consensus 97 ~~~~~~~~~H------~~~V~~~~~~~~~~~l~s~s~--D~~i~vWd~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~ 166 (335)
.+.+..+..+ ......++++|+|++|+.++. +++|.+||+.+++.... +...+... +.+.|++ ..+++.
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~-v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWS-VIPQPNRPRSFMTI 169 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEE-EEECTTSSSEEEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcce-eEEcCCCCeeEEEE
Confidence 8888776532 245678999999999988874 68999999998765443 22222111 3355654 677778
Q ss_pred EcCCeEEEEEccCCCCCceeeEEe---ccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCee--eeeecc------
Q psy16316 167 VNSDTIKLYDVRSFDKGPFSNFKF---AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC--LQTLAG------ 235 (335)
Q Consensus 167 ~~d~~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~------ 235 (335)
+.|+.+.+|+..... ....... ..+.......+.++|++..++..+.++.+.++|+..... ...+..
T Consensus 170 ~~dg~~~~v~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 170 CGDGGLLTINLGEDG--KVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK 247 (361)
T ss_dssp ETTSSEEEEEECTTS--SEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred CCCCcEEEEEECCCC--cEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence 888999998875311 1110000 000011111234567787777777888999999865432 111110
Q ss_pred ccc-CCCCceEEEEcCCCcEEEEEeC-----------CCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee-
Q psy16316 236 FLN-NKGCPLEASFTPDSKYVISGST-----------DGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC- 302 (335)
Q Consensus 236 ~~~-~~~~v~~~~~sp~~~~l~tgs~-----------dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~- 302 (335)
... .......++|+|+++.+.++.. ...|.+||..+++.+..++.+ . ...++|+|+|++++++.
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~-~--p~~ia~spdg~~l~v~n~ 324 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR-D--ALSMTIDQQRNLMLTLDG 324 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT-T--CCEEEEETTTTEEEEECS
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC-C--eeEEEECCCCCEEEEeCC
Confidence 000 0011123789999877665533 347999999999888888653 3 88999999999877665
Q ss_pred ceeEEecc
Q psy16316 303 TNLAFWIP 310 (335)
Q Consensus 303 ~~~~~w~~ 310 (335)
+++.+|.+
T Consensus 325 ~~v~v~D~ 332 (361)
T 2oiz_A 325 GNVNVYDI 332 (361)
T ss_dssp SCEEEEEC
T ss_pred CeEEEEEC
Confidence 56888854
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.73 E-value=7.6e-15 Score=129.40 Aligned_cols=258 Identities=9% Similarity=0.065 Sum_probs=170.1
Q ss_pred ccEEEEEECCCCCEEEEec---------CCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCC---CCeE
Q psy16316 22 DKITSIDYSADGLLLISCS---------EDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI---DDTV 89 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs---------~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~i 89 (335)
..+..+.+ ||+++|... .++.|.+||+++++.. .+ ..+..++|+|++...++++... ...+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 45777888 998877642 3678999999887643 23 4577889999987665554321 2247
Q ss_pred EEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCC---------------------------CcEEEeecCCCCce
Q psy16316 90 RYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD---------------------------KTVRLWDLRSPNCQ 142 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---------------------------~~i~vWd~~~~~~~ 142 (335)
.++++.+++..+....+. +.++.|+|+++.|+.++.+ ..|.+||+.+++..
T Consensus 88 ~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 88 WVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 777888877666555443 9999999999988887643 57899999887762
Q ss_pred eEEEecCCcceEEECCCCCEEEEEEcCC-------eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC
Q psy16316 143 GIMHVSGSRPIAAFDPEGLIFGVGVNSD-------TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215 (335)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~-------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 215 (335)
..+... ......|+|+| +++++..+. ...+|.+.. +....+... ..+. .++|+|+.|+..+.
T Consensus 166 ~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~---~~~~~l~~~----~~~~--~~spdg~~l~~~~~ 234 (347)
T 2gop_A 166 EEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED---GKEEKMFEK----VSFY--AVDSDGERILLYGK 234 (347)
T ss_dssp EEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET---TEEEEEEEE----ESEE--EEEECSSCEEEEEC
T ss_pred eeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCC---CceEEeccC----ccee--eECCCCCEEEEEEc
Confidence 222223 55667899999 777775542 445665542 122222211 2222 34999998887764
Q ss_pred C--------CeEEEEECCCCeeeeeecccccCCCCceE-EEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCe
Q psy16316 216 G--------SIIRTFDAYNGQCLQTLAGFLNNKGCPLE-ASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPV 286 (335)
Q Consensus 216 ~--------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v 286 (335)
+ ..|.+|| +++....... +...+.. +.|+ |+ ++++++.++.++|| +.++...... .+.+.|
T Consensus 235 ~~~~~~~~~~~l~~~d--~~~~~~l~~~---~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~--~~~~~v 304 (347)
T 2gop_A 235 PEKKYMSEHNKLYIYD--GKEVMGILDE---VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA--KGRHWI 304 (347)
T ss_dssp CSSSCCCSSCEEEEEC--SSCEEESSTT---CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE--CSSSEE
T ss_pred cccCCccccceEEEEC--CCceEecccc---CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe--cCCCeE
Confidence 3 3688888 5543322222 2234554 8899 88 99999999999999 8765544333 246789
Q ss_pred EEEEeCCCCcEEEeee--ce-eEEeccc
Q psy16316 287 QTIQFNPKFNMMASAC--TN-LAFWIPT 311 (335)
Q Consensus 287 ~~v~~sp~~~~~~s~~--~~-~~~w~~~ 311 (335)
.+++|+| .++++++ .. ..+|..+
T Consensus 305 ~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 305 MGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9999999 5555544 22 3788765
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.73 E-value=6.1e-14 Score=122.99 Aligned_cols=245 Identities=9% Similarity=0.042 Sum_probs=162.3
Q ss_pred eeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCC----CeE
Q psy16316 14 AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKID----DTV 89 (335)
Q Consensus 14 ~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~i 89 (335)
...+.++...+.++.|+|+|++++++..++.|.+||.++++...........+..+++.+++. +.+++..+ +.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i 114 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGI 114 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEE
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceE
Confidence 345667777889999999999888999999999999988765443333445678888887654 33333334 689
Q ss_pred EEEEcCCCceEeeec--CCCCCeEEEEECCCCCEEEEeeC------CCcEEEeecCCCCceeEEEecCCcceEEECCCCC
Q psy16316 90 RYLSLHDNKYIRYFP--GHTKKVNSLCLSPIDDTFISGSY------DKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGL 161 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~--~H~~~V~~~~~~~~~~~l~s~s~------D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (335)
.+||..++.....+. .+...+.++.++|+++++++... .+.|..+|..+++.............++++|+++
T Consensus 115 ~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 115 FAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK 194 (333)
T ss_dssp EEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred EEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCC
Confidence 999998877654443 34567999999999988887664 3556666665544433322222344578999998
Q ss_pred EE-EEEEcCCeEEEEEccCCCCCceeeE----EeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc
Q psy16316 162 IF-GVGVNSDTIKLYDVRSFDKGPFSNF----KFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236 (335)
Q Consensus 162 ~~-~~~~~d~~v~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 236 (335)
.+ ++...++.|.+||+.... .....+ ...........+++++++|+++++...++.|.+||. +++.+..+...
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g-~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~ 272 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDG-VTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP 272 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTS-SSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred EEEEEeCCCCeEEEEEecCCC-cCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcC
Confidence 54 555567899999986311 111111 000111124567999999998888777889999998 45555555432
Q ss_pred cc---CCCCceEEEEcCCCcEEEEEeCCC
Q psy16316 237 LN---NKGCPLEASFTPDSKYVISGSTDG 262 (335)
Q Consensus 237 ~~---~~~~v~~~~~sp~~~~l~tgs~dg 262 (335)
.. +...+..++|+||++.|+.++.++
T Consensus 273 ~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 273 GRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCccccccCcceEEECCCCCEEEEEeCcc
Confidence 11 112467899999987766555553
No 175
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.72 E-value=7.3e-13 Score=113.78 Aligned_cols=277 Identities=9% Similarity=0.048 Sum_probs=185.8
Q ss_pred eccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeee-ecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC
Q psy16316 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV-FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 95 (335)
+..+...+.++.++++|.++++...++.|.+||.. +...... ......+..+++.+++. +.++...++.+..|+..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE--VWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC--EEEeCCCCCeEEEECCC
Confidence 34566789999999999988888778999999988 5432211 11234466677665443 44444457788889876
Q ss_pred CCceE-eeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe--cCCcceEEECCCCCEEEEEEcCCeE
Q psy16316 96 DNKYI-RYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV--SGSRPIAAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 96 ~~~~~-~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v 172 (335)
++.. ..+......+.++++.++++++++...++.|..||. ++........ ......+++++++.++++...++.|
T Consensus 87 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 164 (299)
T 2z2n_A 87 -GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI 164 (299)
T ss_dssp -SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred -CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence 3322 222334567899999999988888878899999998 5443322211 1223456788999988877777899
Q ss_pred EEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCC
Q psy16316 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDS 252 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 252 (335)
..||. .. ....+.. ........++++++++.+.++...++.|..||. +++.. .+.. ......+..++++|+|
T Consensus 165 ~~~~~-~g---~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~-~~~~~~~~~i~~~~~g 236 (299)
T 2z2n_A 165 GRITE-SG---DITEFKI-PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKI-PTPNARPHAITAGAGI 236 (299)
T ss_dssp EEECT-TC---CEEEEEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEEC-SSTTCCEEEEEECSTT
T ss_pred EEEcC-CC---cEEEeeC-CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEEC-CCCCCCceeEEECCCC
Confidence 99987 32 1222211 122234568999999997777666788999999 66533 2211 1223457889999999
Q ss_pred cEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee-ceeEEe
Q psy16316 253 KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC-TNLAFW 308 (335)
Q Consensus 253 ~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~-~~~~~w 308 (335)
+++++...++.|.+||. ++.........+...+.++++ +++.+.++.. +.+..+
T Consensus 237 ~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 237 DLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp CEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred CEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence 98887777889999998 454332212234567899999 9998877763 334443
No 176
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.71 E-value=1.4e-14 Score=127.19 Aligned_cols=256 Identities=11% Similarity=0.062 Sum_probs=171.9
Q ss_pred cCCCeEEEEEccCCcceeeeecc----c--ccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEE
Q psy16316 40 SEDDQIVIYDCELGTNKRTVFSK----K--YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSL 113 (335)
Q Consensus 40 s~Dg~i~lwd~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~ 113 (335)
+.+++|.++|.++++....++.. . .....+.+. ... +..+...++.+.++|..+++.+..+.. ......+
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~-lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i 89 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGI-GWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYI 89 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTE-EEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEE
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCE-EEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEE
Confidence 34899999999998876554321 1 112334442 333 334444678999999999999888853 4678899
Q ss_pred EECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC------CcceEEECCCCCEEEEEE-cCCeEEEEEccCCCCCcee
Q psy16316 114 CLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG------SRPIAAFDPEGLIFGVGV-NSDTIKLYDVRSFDKGPFS 186 (335)
Q Consensus 114 ~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~ 186 (335)
++++++...++...++.|.+||+.+++....+.... ....+++ .++.++++.. .+++|.++|+.+.. ...
T Consensus 90 ~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~--~~~ 166 (328)
T 3dsm_A 90 HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDK--VVD 166 (328)
T ss_dssp EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTE--EEE
T ss_pred EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCe--EEE
Confidence 998888655665589999999999887665554433 2223445 4555666655 48899999987632 111
Q ss_pred eEEeccCCCccceEEEEccCCCEEEEEeCC----------CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEE
Q psy16316 187 NFKFAAEKECDWTGIKFSADGKYILISTNG----------SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI 256 (335)
Q Consensus 187 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~----------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 256 (335)
.+.. ......++++|+|++++++..+ +.|.++|..+++..+.+.... ...+..++|+|++++|.
T Consensus 167 ~i~~----g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~ly 240 (328)
T 3dsm_A 167 ELTI----GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLY 240 (328)
T ss_dssp EEEC----SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEE
T ss_pred EEEc----CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEE
Confidence 2211 1123568999999977766554 789999999998776654211 13578899999999888
Q ss_pred EEeCCCcEEEEECCCCeeEE--EeCCCCCCCeEEEEeCC-CCcEEEee------eceeEEeccc
Q psy16316 257 SGSTDGRIHIWNAEKGFKVC--VLDADHPSPVQTIQFNP-KFNMMASA------CTNLAFWIPT 311 (335)
Q Consensus 257 tgs~dg~v~iwd~~~~~~~~--~~~~~h~~~v~~v~~sp-~~~~~~s~------~~~~~~w~~~ 311 (335)
++.. .|.+||..++.... .+. .+......++++| ++.+.++. .+.+.+|.++
T Consensus 241 v~~~--~v~~~d~~t~~~~~~~~~~-~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 241 WINN--DIWRMPVEADRVPVRPFLE-FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EESS--SEEEEETTCSSCCSSCSBC-CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEcc--EEEEEECCCCceeeeeeec-CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 7765 89999998765421 111 1235678899999 56666665 3456666543
No 177
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.71 E-value=2.6e-14 Score=123.40 Aligned_cols=246 Identities=10% Similarity=0.051 Sum_probs=166.2
Q ss_pred cceeeeccCCccEEEEEECCCCC-EEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 12 KVAKLFRENTDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 12 ~~~~~~~~h~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
...+.+..+.....++.|+|+|+ +++++..++.|.+||.+++ ...+......+..+++.+++. +.++...++.|.
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~ 93 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH--LIACSHGLRRLE 93 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC--EEEEETTTTEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc--EEEEecCCCeEE
Confidence 34456667788889999999998 8889999999999999877 445544555677888877655 444554568899
Q ss_pred EEEcCCCceEeeecCC----CCCeEEEEECCCCCEEEE----eeC-------------CCcEEEeecCCCCceeEEEecC
Q psy16316 91 YLSLHDNKYIRYFPGH----TKKVNSLCLSPIDDTFIS----GSY-------------DKTVRLWDLRSPNCQGIMHVSG 149 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H----~~~V~~~~~~~~~~~l~s----~s~-------------D~~i~vWd~~~~~~~~~~~~~~ 149 (335)
+||..+++........ ...++.++++|+|++++| |+. .+.|..+|.. ++.........
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~ 172 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV 172 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCS
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCC
Confidence 9999887765443321 235678999999999888 331 2455555544 33322222222
Q ss_pred CcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCce-eeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCe
Q psy16316 150 SRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPF-SNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQ 228 (335)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~ 228 (335)
....++++|+++.+++.+.++.|.+||+... +.. ..............+++++++|++.++. ++.|.+||.. ++
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~--g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~ 247 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNAR--GETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD 247 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSS--SCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCC--CcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC
Confidence 2345789999998866777889999998621 112 1111111122234579999999966665 7889999986 66
Q ss_pred eeeeecccccCCCCceEEEE-cCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 229 CLQTLAGFLNNKGCPLEASF-TPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~-sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
.+..+..+ .. +.+++| +|+++.|..++.++ +..++..+.
T Consensus 248 ~~~~~~~~---~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 248 ELGRVLTP---QT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp EEEEEECS---SC-CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred EEEEEECC---CC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 66665432 23 678999 68999888888764 666666544
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.71 E-value=1.5e-14 Score=127.09 Aligned_cols=222 Identities=10% Similarity=0.058 Sum_probs=155.8
Q ss_pred CeEEEEEcCCCceEeeec-CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCC-ceeEEEe-------cC---CcceE
Q psy16316 87 DTVRYLSLHDNKYIRYFP-GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN-CQGIMHV-------SG---SRPIA 154 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~-~~~~~~~-------~~---~~~~~ 154 (335)
+.|.+||..+++.+..+. ++......++++|+++++++.+.++.|++||..... ....+.. .. ....+
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i 148 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV 148 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence 579999999888877664 555688999999999999999999999999986542 2222211 00 12357
Q ss_pred EECC-CCCEEEEEE-cCCeEEEEEccCCCCCceeeEEeccC-------CCccceEEEEccC-CCEEEEEeCCCeEEEEEC
Q psy16316 155 AFDP-EGLIFGVGV-NSDTIKLYDVRSFDKGPFSNFKFAAE-------KECDWTGIKFSAD-GKYILISTNGSIIRTFDA 224 (335)
Q Consensus 155 ~~~~-~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~s~~-~~~l~~~~~~~~i~i~d~ 224 (335)
+++| ++.++++.+ .++.|.+||... .....+..... .-....+++++|+ +.++++...++.|++|+.
T Consensus 149 a~~~~~g~lyv~d~~~~~~I~~~~~~g---~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~ 225 (329)
T 3fvz_A 149 AVEPSTGAVFVSDGYCNSRIVQFSPSG---KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKT 225 (329)
T ss_dssp EECTTTCCEEEEECSSCCEEEEECTTS---CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCeEEEEeCCCCCeEEEEcCCC---CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEEC
Confidence 8999 899998886 689999999532 12222211110 1112478999999 666666677889999999
Q ss_pred CCCeeeeeecccccCCCCceEEEEcC------CCcEEEEEeCCCcEEEEECCCCeeEEEeC--CCCCCCeEEEEeCCCCc
Q psy16316 225 YNGQCLQTLAGFLNNKGCPLEASFTP------DSKYVISGSTDGRIHIWNAEKGFKVCVLD--ADHPSPVQTIQFNPKFN 296 (335)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~v~~~~~sp------~~~~l~tgs~dg~v~iwd~~~~~~~~~~~--~~h~~~v~~v~~sp~~~ 296 (335)
.+++.+..+... .....+..++|+| +++.+++...+.+|++|+..++.....+. ..+......++++|+|.
T Consensus 226 ~~G~~~~~~~~~-~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~ 304 (329)
T 3fvz_A 226 DTKEFVREIKHA-SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGT 304 (329)
T ss_dssp TTCCEEEEECCT-TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSE
T ss_pred CCCcEEEEEecc-ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCC
Confidence 988888777432 2234567889999 33333334445589999999888777663 34667789999999998
Q ss_pred EEEeeec--eeEEecccc
Q psy16316 297 MMASACT--NLAFWIPTY 312 (335)
Q Consensus 297 ~~~s~~~--~~~~w~~~~ 312 (335)
++++... .|++|.++.
T Consensus 305 lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 305 VYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEESSSCCEEEEEEEE
T ss_pred EEEEECCCCEEEEEeCCc
Confidence 8887754 466676543
No 179
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.70 E-value=7.4e-14 Score=119.80 Aligned_cols=235 Identities=9% Similarity=0.175 Sum_probs=159.6
Q ss_pred cceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeec------CCCCCeEEEEE-CCCCCEEEEeeC-CCcEEEeec
Q psy16316 65 GVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFP------GHTKKVNSLCL-SPIDDTFISGSY-DKTVRLWDL 136 (335)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~------~H~~~V~~~~~-~~~~~~l~s~s~-D~~i~vWd~ 136 (335)
.+..+++.+++. ++++...++.|.+||.. ++.+..+. +|...+.++++ .++++++++... ++.|++||
T Consensus 31 ~p~~v~~~~~g~--l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d- 106 (286)
T 1q7f_A 31 EPSGVAVNAQND--IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN- 106 (286)
T ss_dssp CEEEEEECTTCC--EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred CCceEEECCCCC--EEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence 455667766543 45555568899999987 55555553 35567899999 567777777644 89999999
Q ss_pred CCCCceeEEEec--CCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe
Q psy16316 137 RSPNCQGIMHVS--GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST 214 (335)
Q Consensus 137 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 214 (335)
.+++....+... .....++++++++++++...++.|.+||... .....+.. ........+++++|+++++++..
T Consensus 107 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g---~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 107 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG---NVLHKFGC-SKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS---CEEEEEEC-TTTCSSEEEEEECSSSEEEEEEG
T ss_pred CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC---CEEEEeCC-CCccCCcEEEEECCCCCEEEEEC
Confidence 455544333221 1234578899999888888889999999642 12222211 11223457899999999777777
Q ss_pred CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC-cEEEEECCCCeeEEEeCC-CCCCCeEEEEeC
Q psy16316 215 NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG-RIHIWNAEKGFKVCVLDA-DHPSPVQTIQFN 292 (335)
Q Consensus 215 ~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg-~v~iwd~~~~~~~~~~~~-~h~~~v~~v~~s 292 (335)
.++.|++||.. ++.+..+... .....+..++++|+|+++++...++ .|++|+.. +..+..+.. .....+..++|+
T Consensus 183 ~~~~i~~~~~~-g~~~~~~~~~-g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~ 259 (286)
T 1q7f_A 183 RAHCVKVFNYE-GQYLRQIGGE-GITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALM 259 (286)
T ss_dssp GGTEEEEEETT-CCEEEEESCT-TTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEE
T ss_pred CCCEEEEEcCC-CCEEEEEccC-CccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEEC
Confidence 78999999974 4555555321 1224578899999999999988886 99999964 544444432 122347799999
Q ss_pred CCCcEEEee-eceeEEecc
Q psy16316 293 PKFNMMASA-CTNLAFWIP 310 (335)
Q Consensus 293 p~~~~~~s~-~~~~~~w~~ 310 (335)
|+|.++++. ++.+++|.+
T Consensus 260 ~~g~l~vs~~~~~v~v~~~ 278 (286)
T 1q7f_A 260 DDGSVVLASKDYRLYIYRY 278 (286)
T ss_dssp TTTEEEEEETTTEEEEEEC
T ss_pred CCCcEEEECCCCeEEEEEc
Confidence 999887775 356888864
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.70 E-value=7.1e-14 Score=120.64 Aligned_cols=233 Identities=11% Similarity=0.080 Sum_probs=157.6
Q ss_pred ccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCc
Q psy16316 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC 141 (335)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~ 141 (335)
.......++|.++++.. +.++..++.|..|+..++ .+.+..+...+.+++++++++++++...++.|.+||..+++.
T Consensus 26 ~~~~~eg~~~d~~g~~l-~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAV-IFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp CCSSEEEEEEEGGGTEE-EEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred CCccccCCeEeCCCCEE-EEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence 33345667887766533 334445789999999887 666777788899999999999888887789999999987775
Q ss_pred eeEEEec-----CCcceEEECCCCCEEEEEEc-----------------CCeEEEEEccCCCCCceeeEEeccCCCccce
Q psy16316 142 QGIMHVS-----GSRPIAAFDPEGLIFGVGVN-----------------SDTIKLYDVRSFDKGPFSNFKFAAEKECDWT 199 (335)
Q Consensus 142 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (335)
....... .....++++|+|+++++... .+.|..++.. +..... ........
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~----g~~~~~---~~~~~~~~ 175 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD----GTLSAP---IRDRVKPN 175 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT----SCEEEE---ECCCSSEE
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC----CCEEEe---ecCCCCCc
Confidence 4433211 11234788999999887321 2345444432 112211 12223347
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECC-CCee---eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeE
Q psy16316 200 GIKFSADGKYILISTNGSIIRTFDAY-NGQC---LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKV 275 (335)
Q Consensus 200 ~~~~s~~~~~l~~~~~~~~i~i~d~~-~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~ 275 (335)
+++|+|+++.+++.+.++.|++|++. +++. .+.+ . .....+..++++|+|+++++. ++.|.+||.. +...
T Consensus 176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~--~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~ 249 (296)
T 3e5z_A 176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T--VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDEL 249 (296)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C--CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEE
T ss_pred cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e--CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEE
Confidence 89999999999767778899999986 4543 2233 1 133456679999999977776 7889999986 6655
Q ss_pred EEeCCCCCCCeEEEEe-CCCCcEEEeeeceeEEeccccc
Q psy16316 276 CVLDADHPSPVQTIQF-NPKFNMMASACTNLAFWIPTYL 313 (335)
Q Consensus 276 ~~~~~~h~~~v~~v~~-sp~~~~~~s~~~~~~~w~~~~~ 313 (335)
..+.. +.. +.+++| +|++..|..++.+ .+|.++..
T Consensus 250 ~~~~~-~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~ 285 (296)
T 3e5z_A 250 GRVLT-PQT-TSNLCFGGPEGRTLYMTVST-EFWSIETN 285 (296)
T ss_dssp EEEEC-SSC-CCEEEEESTTSCEEEEEETT-EEEEEECS
T ss_pred EEEEC-CCC-ceeEEEECCCCCEEEEEcCC-eEEEEEcc
Confidence 55543 444 889999 6898876666543 45544443
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.70 E-value=2.1e-14 Score=139.08 Aligned_cols=250 Identities=12% Similarity=0.049 Sum_probs=164.6
Q ss_pred cCCccEEEEEECCCCCEEEEecCCC-----eEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCC--------
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDD-----QIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI-------- 85 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg-----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 85 (335)
+|+..+..++|||||++||.++.++ +|++||+++++....... ...+..++|++++...++.+...
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCcccccccc
Confidence 4556789999999999998766543 899999999987653222 22366789999887665554321
Q ss_pred ------CCeEEEEEcCCCce--Eeeec--CCCCCeEEEEECCCCCEEEEeeC-----CCcEEEeecCC------CC-cee
Q psy16316 86 ------DDTVRYLSLHDNKY--IRYFP--GHTKKVNSLCLSPIDDTFISGSY-----DKTVRLWDLRS------PN-CQG 143 (335)
Q Consensus 86 ------d~~i~~~~~~~~~~--~~~~~--~H~~~V~~~~~~~~~~~l~s~s~-----D~~i~vWd~~~------~~-~~~ 143 (335)
...|.+|++.+++. ...+. .|...+.++.|+|+|++|+.++. +..|.+||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 12399999987652 22333 35666889999999998887765 67899999976 42 222
Q ss_pred EEEecCCcceEEECCCCCEEEEEEcC----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCe-
Q psy16316 144 IMHVSGSRPIAAFDPEGLIFGVGVNS----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSI- 218 (335)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~- 218 (335)
.+..........++++|..++..+.. ..|.+||+..........+.. ......+..+++++++.++++...++.
T Consensus 281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP-EHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC-CCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC-CCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence 22221111223577888877666543 369999987532111222211 111124567888877777777777774
Q ss_pred -EEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEE-e---CCCcEEEEECCCCe
Q psy16316 219 -IRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISG-S---TDGRIHIWNAEKGF 273 (335)
Q Consensus 219 -i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tg-s---~dg~v~iwd~~~~~ 273 (335)
|++|++.+++..+.+..+ ...+..++++|+++.++.. + ..++|++||+.++.
T Consensus 360 ~l~~~~~~~g~~~~~l~~~---~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 360 TLQLHDLATGALLKIFPLE---VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTTCCEEEEECCC---SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEECCCCCEEEecCCC---CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 677787777766666543 3456678899998765532 2 35789999998765
No 182
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.69 E-value=1.1e-14 Score=141.82 Aligned_cols=278 Identities=12% Similarity=0.067 Sum_probs=169.5
Q ss_pred eeeeccCCcc-----EEEEEECCCCCEEEEecCC---------CeEEEEEccCCcceeeeecccccceEEEEecCCCeeE
Q psy16316 14 AKLFRENTDK-----ITSIDYSADGLLLISCSED---------DQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAI 79 (335)
Q Consensus 14 ~~~~~~h~~~-----V~~v~~s~~g~~lasgs~D---------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (335)
.+.+.+|+.. ...+.|||||++|+.++.+ +.+.+||+++++.. .+..+...+...+|+|++....
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la 127 (740)
T 4a5s_A 49 SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLA 127 (740)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEE
T ss_pred EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEE
Confidence 4556777643 2347889999999999987 55679999998754 3445556788999999988765
Q ss_pred EeecCCCCeEEEEEcCCCceEee-ecCCCCCe-----------------EEEEECCCCCEEEEeeCCC------------
Q psy16316 80 HASTKIDDTVRYLSLHDNKYIRY-FPGHTKKV-----------------NSLCLSPIDDTFISGSYDK------------ 129 (335)
Q Consensus 80 ~~~~~~d~~i~~~~~~~~~~~~~-~~~H~~~V-----------------~~~~~~~~~~~l~s~s~D~------------ 129 (335)
+. .|+.|.+|++.+++..+. ..++...+ .++.|+|||+.|+.++.|.
T Consensus 128 ~~---~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~ 204 (740)
T 4a5s_A 128 YV---WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYS 204 (740)
T ss_dssp EE---ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECC
T ss_pred EE---ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeec
Confidence 54 378999999988876553 23443333 3589999999999887543
Q ss_pred ------------------------cEEEeecCC---CCceeEEEec---------CCcceEEECCCCCEEEEEEcC----
Q psy16316 130 ------------------------TVRLWDLRS---PNCQGIMHVS---------GSRPIAAFDPEGLIFGVGVNS---- 169 (335)
Q Consensus 130 ------------------------~i~vWd~~~---~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~d---- 169 (335)
+|++||+.+ +.+....... .....+.|+|+|++++.....
T Consensus 205 ~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~ 284 (740)
T 4a5s_A 205 DESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNY 284 (740)
T ss_dssp STTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTE
T ss_pred CCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCE
Confidence 477888877 6321111111 113346799999866655432
Q ss_pred CeEEEEEccCCC----CCceeeEEeccCCCcc-----ceEEEEccCCCEEE-EEeC-C--CeEEEEECCCCeeeeeeccc
Q psy16316 170 DTIKLYDVRSFD----KGPFSNFKFAAEKECD-----WTGIKFSADGKYIL-ISTN-G--SIIRTFDAYNGQCLQTLAGF 236 (335)
Q Consensus 170 ~~v~iwd~~~~~----~~~~~~~~~~~~~~~~-----~~~~~~s~~~~~l~-~~~~-~--~~i~i~d~~~~~~~~~~~~~ 236 (335)
..|.+||+.+.. ......+.. ..+... ....+|+|||+.++ ..+. + ..|++||+.+++.. .+..
T Consensus 285 ~~i~~~d~~tg~~~~~~~~~~~l~~-~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~- 361 (740)
T 4a5s_A 285 SVMDICDYDESSGRWNCLVARQHIE-MSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITK- 361 (740)
T ss_dssp EEEEEEEEETTTTEEEECGGGCEEE-ECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCC-
T ss_pred EEEEEEECCCCccccceeEEEEeee-ccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-eccc-
Confidence 379999987643 000111100 011111 23578999999877 5543 3 46899998876543 3322
Q ss_pred ccCCCCceEEEEcCCCcE-EEEEeC----CCcEEEE--ECCCCeeEEEeCC---CCCCCeEEEEeCCCCcEEEee
Q psy16316 237 LNNKGCPLEASFTPDSKY-VISGST----DGRIHIW--NAEKGFKVCVLDA---DHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 237 ~~~~~~v~~~~~sp~~~~-l~tgs~----dg~v~iw--d~~~~~~~~~~~~---~h~~~v~~v~~sp~~~~~~s~ 301 (335)
....+..+ +.+|++. +++++. .+...|| ++..+.....+.. .........+|+|++.+++..
T Consensus 362 --g~~~v~~~-~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~ 433 (740)
T 4a5s_A 362 --GTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLR 433 (740)
T ss_dssp --SSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEE
T ss_pred --CCEEEEEE-EEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEE
Confidence 11223333 2244554 444444 2344555 4443332223321 123568899999999876644
No 183
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.68 E-value=6.7e-14 Score=118.82 Aligned_cols=239 Identities=10% Similarity=0.064 Sum_probs=161.8
Q ss_pred cEEEEEECCCCCEEE-EecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe
Q psy16316 23 KITSIDYSADGLLLI-SCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 23 ~V~~v~~s~~g~~la-sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 101 (335)
...++.++++|++++ +.+.++.|.+||..+.............+..+++.+++. +.++.. ++.|.+||........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCceEee
Confidence 678999999999888 657889999999765543221122224566778877654 344444 7899999987665433
Q ss_pred eecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECCCCCEEEEEEcCCeEEEEEccCC
Q psy16316 102 YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180 (335)
Q Consensus 102 ~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~ 180 (335)
........+..+++.++++++++...++.|.+||..+.......... .....++++++++++++...++.|.+||....
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 22233467899999999998888888899999986654332211111 12345788999998888777889999997642
Q ss_pred CCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeC
Q psy16316 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST 260 (335)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~ 260 (335)
. .. ...........+++++++|..+++...++.|..|+.......... ......+..++++|+|+++++...
T Consensus 182 ~---~~--~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~---~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 182 N---QV--VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP---FTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp C---EE--ECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC---CCSCSCEEEEEECTTCCEEEEEGG
T ss_pred c---eE--eecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec---cCCCCCceeEEECCCCCEEEEECC
Confidence 1 11 111111134578999999977777767888999998765432211 112245788999999999999999
Q ss_pred CCcEEEEECCCC
Q psy16316 261 DGRIHIWNAEKG 272 (335)
Q Consensus 261 dg~v~iwd~~~~ 272 (335)
+++|++++....
T Consensus 254 ~~~v~~~~~~~~ 265 (270)
T 1rwi_B 254 NDRVVKLTSLEH 265 (270)
T ss_dssp GTEEEEECCCGG
T ss_pred CCEEEEEcCCCc
Confidence 999999998643
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.68 E-value=1.3e-14 Score=140.22 Aligned_cols=248 Identities=12% Similarity=0.037 Sum_probs=159.4
Q ss_pred cCCccEEEEEECCCCCEEE-----EecCCCeEEEEEccCCcce-eeeecccccceEEEEecCCCeeEEeecCCCC-----
Q psy16316 19 ENTDKITSIDYSADGLLLI-----SCSEDDQIVIYDCELGTNK-RTVFSKKYGVDLIRFTHAKQAAIHASTKIDD----- 87 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~la-----sgs~Dg~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----- 87 (335)
+|+..+..++|||||++|| +|+.+.+|++||+++++.. .... .......++|++++...+..+ .|.
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wspDg~~l~~~~--~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTPDSKGFYYEW--LPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECTTSSEEEEEE--CCCCTTSC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEecCCCEEEEEE--ecCCCCCc
Confidence 5677899999999999999 7777889999999998764 2111 111126788999887655444 233
Q ss_pred --------eEEEEEcCCCc----eEeeecCCCCCeEEEEECCCCCEEEEeeCCC----cEEEeecCCCCceeEEEecCCc
Q psy16316 88 --------TVRYLSLHDNK----YIRYFPGHTKKVNSLCLSPIDDTFISGSYDK----TVRLWDLRSPNCQGIMHVSGSR 151 (335)
Q Consensus 88 --------~i~~~~~~~~~----~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~----~i~vWd~~~~~~~~~~~~~~~~ 151 (335)
.|++|++.++. .+....+|...+.++.|+|+|++|+.++.++ .|.+||..++....+.......
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 274 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAK 274 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCC
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCce
Confidence 39999998775 3333445667889999999999988887776 6777776555444333322222
Q ss_pred ceEEECCCCCEEEEEE---cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECC-CC
Q psy16316 152 PIAAFDPEGLIFGVGV---NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAY-NG 227 (335)
Q Consensus 152 ~~~~~~~~~~~~~~~~---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~-~~ 227 (335)
....+ +++.+++... .++.|.+||+.+........+.. ......+..++++ ++.++++...++..++|... ++
T Consensus 275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g 351 (695)
T 2bkl_A 275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVP-EDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG 351 (695)
T ss_dssp EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC-CCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEec-CCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence 22233 5555444433 25789999986532111122211 1113345667887 66777788888887777554 35
Q ss_pred eeeeeecccccCCCCceEEEEcCCCcEEE----EEeCCCcEEEEECCCCee
Q psy16316 228 QCLQTLAGFLNNKGCPLEASFTPDSKYVI----SGSTDGRIHIWNAEKGFK 274 (335)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~----tgs~dg~v~iwd~~~~~~ 274 (335)
+..+.+..+ ....+..++++|+++.++ +....++|++||+.++..
T Consensus 352 ~~~~~l~~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 352 KPVRTVQLP--GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp CEEEECCCS--SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CeeEEecCC--CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 545544321 133455678899998766 333457899999987764
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.66 E-value=1.3e-13 Score=121.12 Aligned_cols=245 Identities=10% Similarity=0.066 Sum_probs=168.7
Q ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe
Q psy16316 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 101 (335)
.....+.+. ++++.++...+++|.+||.++++.+..+. .......+++++++ .++.+...++.|.++|+.+++...
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g--~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDE--KAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETT--EEEEEEBSCSEEEEEETTTTEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCC--eEEEEECCCCeEEEEECCCCeEEE
Confidence 346677774 45566677778999999999998877774 23456677776664 344554468999999999998877
Q ss_pred eecCCC-----CCeEEEEECCCCCEEEEee-CCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcC------
Q psy16316 102 YFPGHT-----KKVNSLCLSPIDDTFISGS-YDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNS------ 169 (335)
Q Consensus 102 ~~~~H~-----~~V~~~~~~~~~~~l~s~s-~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------ 169 (335)
.++... .....+++ ..+..+++.. .+++|.++|+.+++....+........+.++|+|++++++..+
T Consensus 120 ~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~ 198 (328)
T 3dsm_A 120 YIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPY 198 (328)
T ss_dssp EEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred EEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCcc
Confidence 665332 14556777 4444445543 4899999999988776665554444567889999988777654
Q ss_pred ----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceE
Q psy16316 170 ----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLE 245 (335)
Q Consensus 170 ----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 245 (335)
+.|.++|..+.. ....+.... ......++++|+++.+.++.. .|.+||..+++...... .......+..
T Consensus 199 ~~~~~~v~~id~~t~~--v~~~~~~~~--g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~-~~~~~~~p~g 271 (328)
T 3dsm_A 199 GYEAPSLYRIDAETFT--VEKQFKFKL--GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF-LEFRDTKYYG 271 (328)
T ss_dssp CBCCCEEEEEETTTTE--EEEEEECCT--TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS-BCCCSSCEEE
T ss_pred ccCCceEEEEECCCCe--EEEEEecCC--CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee-ecCCCCceEE
Confidence 789999987532 111221111 123578999999999988765 89999998876532111 0111345788
Q ss_pred EEEcC-CCcEEEEE----eCCCcEEEEECCCCeeEEEeC
Q psy16316 246 ASFTP-DSKYVISG----STDGRIHIWNAEKGFKVCVLD 279 (335)
Q Consensus 246 ~~~sp-~~~~l~tg----s~dg~v~iwd~~~~~~~~~~~ 279 (335)
++++| ++.++++. ..+++|.+||.. +..+..+.
T Consensus 272 i~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 272 LTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred EEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 99999 66677777 678999999987 76665553
No 186
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.66 E-value=2.1e-15 Score=135.19 Aligned_cols=240 Identities=13% Similarity=0.060 Sum_probs=148.4
Q ss_pred EEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceE---E----------------EEecCCCeeEEee--
Q psy16316 24 ITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDL---I----------------RFTHAKQAAIHAS-- 82 (335)
Q Consensus 24 V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~~~~~-- 82 (335)
...+.|+|||++|+.++.++.|++||+.+++.......+...... + .+++++....+..
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 162 (396)
T 3c5m_A 83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY 162 (396)
T ss_dssp TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence 334789999999999999999999999887654433322221111 1 2233322211111
Q ss_pred -cCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECC-CCCEEEEeeCC------CcEEEeecCCCCceeEEEec--CCcc
Q psy16316 83 -TKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP-IDDTFISGSYD------KTVRLWDLRSPNCQGIMHVS--GSRP 152 (335)
Q Consensus 83 -~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D------~~i~vWd~~~~~~~~~~~~~--~~~~ 152 (335)
...+..+.+||+.+++..... .+...+..+.|+| ++..|+.++.+ ..|.+||+..+......... ....
T Consensus 163 ~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 241 (396)
T 3c5m_A 163 HTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCT 241 (396)
T ss_dssp HTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEE
T ss_pred cCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCcccc
Confidence 134668899999888765554 4677899999999 78777666543 46888888765433222211 1123
Q ss_pred eEEECCCCCEEEEEEcC-----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc-CCCEEEEEe------------
Q psy16316 153 IAAFDPEGLIFGVGVNS-----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA-DGKYILIST------------ 214 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~------------ 214 (335)
...|+|+|+.++..+.+ +.|.+||+.+.. ...+.... ... +.|+| +|++++.+.
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~---~~~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~ 313 (396)
T 3c5m_A 242 HEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE---NEEVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADS 313 (396)
T ss_dssp EEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC---EEEEEECC----SEE-EEEECSSSSEEEEEECCC---------
T ss_pred ceEECCCCCEEEEEecCCCCccceEEEEECCCCC---eEEeeeCC----CCC-CCccCCCCceEEEecCCcceeeccccc
Confidence 46899999876665443 459999987532 12221111 122 78999 999888754
Q ss_pred ----CCCeEEEEECCCCeeeeeecccccCC--------CCceEEEEcCCCcEEEEEeC-CCcEEEE--ECCCCe
Q psy16316 215 ----NGSIIRTFDAYNGQCLQTLAGFLNNK--------GCPLEASFTPDSKYVISGST-DGRIHIW--NAEKGF 273 (335)
Q Consensus 215 ----~~~~i~i~d~~~~~~~~~~~~~~~~~--------~~v~~~~~sp~~~~l~tgs~-dg~v~iw--d~~~~~ 273 (335)
.+..|++||+.+++. +.+..+.... ..+..++|+|||+.|+..+. ++...+| ++..+.
T Consensus 314 ~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 314 YNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp -CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred cccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 346899999988764 3343322100 01345789999998877765 4555555 554443
No 187
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=2.9e-14 Score=136.87 Aligned_cols=286 Identities=11% Similarity=0.032 Sum_probs=170.7
Q ss_pred eeeccCCccEE---------EEEEC--CCCCE-EEEecC-CCeEEEEEcc--CCcceeeeec-----ccccceEEEEecC
Q psy16316 15 KLFRENTDKIT---------SIDYS--ADGLL-LISCSE-DDQIVIYDCE--LGTNKRTVFS-----KKYGVDLIRFTHA 74 (335)
Q Consensus 15 ~~~~~h~~~V~---------~v~~s--~~g~~-lasgs~-Dg~i~lwd~~--~~~~~~~~~~-----~~~~~~~~~~~~~ 74 (335)
+.+..|...|. ...|+ |||++ |+.++. +..|.+|++. .......+.. +...+..++|+++
T Consensus 61 ~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spD 140 (662)
T 3azo_A 61 ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPE 140 (662)
T ss_dssp EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETT
T ss_pred ceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCC
Confidence 45556665555 55554 99998 776554 5666666665 2033344444 4456788999999
Q ss_pred CCeeEEeecC--------CCCeEEEEEcCC------CceEeeec-CCCCCeEEEEECCCCCEEEEeeCCC--------cE
Q psy16316 75 KQAAIHASTK--------IDDTVRYLSLHD------NKYIRYFP-GHTKKVNSLCLSPIDDTFISGSYDK--------TV 131 (335)
Q Consensus 75 ~~~~~~~~~~--------~d~~i~~~~~~~------~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~--------~i 131 (335)
+...+..+.. ....|.+||+.+ ++.. .+. .+...+.+++|+|+|+.|+.++.|+ .|
T Consensus 141 g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i 219 (662)
T 3azo_A 141 RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL 219 (662)
T ss_dssp TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence 8765554421 115789999988 5544 444 5667888999999999999888664 79
Q ss_pred EEeecC-CC---CceeEEEe-cCCcceEEECCCCCEEEEEEcCC--eEEEEEccCCCCCceeeEEeccCCC------ccc
Q psy16316 132 RLWDLR-SP---NCQGIMHV-SGSRPIAAFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKE------CDW 198 (335)
Q Consensus 132 ~vWd~~-~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~------~~~ 198 (335)
.+||+. ++ ....+... ........|+|+|++++++..++ .|.+||+... ....+....... ..+
T Consensus 220 ~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~p~w~~~~ 296 (662)
T 3azo_A 220 KTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG---AATQLCRREEEFAGPLWTPGM 296 (662)
T ss_dssp EEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC---CEEESSCCSSBSSCCCCSTTC
T ss_pred EEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC---ceeecccccccccCccccccC
Confidence 999998 45 33333222 34445678999999888887788 4555554331 111111100000 013
Q ss_pred eEEEEccCCCEEEEEeCCCeEEEE--ECCCCeeeeeecccccCCCCceEE-EEcCCCcEEEEEeCCC--cEEEEECCCCe
Q psy16316 199 TGIKFSADGKYILISTNGSIIRTF--DAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDG--RIHIWNAEKGF 273 (335)
Q Consensus 199 ~~~~~s~~~~~l~~~~~~~~i~i~--d~~~~~~~~~~~~~~~~~~~v~~~-~~sp~~~~l~tgs~dg--~v~iwd~~~~~ 273 (335)
..++|+|++.+++++.. +.+++| |+.+++ .+.+..+ ...+..+ +++++.-++++++.+. .|++||..++.
T Consensus 297 ~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 297 RWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGP---WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp CSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSS---CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred ceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCC---CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 46889999999999988 888888 665555 4555443 2233344 4443333455556554 45556766665
Q ss_pred eEEEeCCCCCCCeEEEEeCCCCcEEEee-e-ceeEEecc
Q psy16316 274 KVCVLDADHPSPVQTIQFNPKFNMMASA-C-TNLAFWIP 310 (335)
Q Consensus 274 ~~~~~~~~h~~~v~~v~~sp~~~~~~s~-~-~~~~~w~~ 310 (335)
..... ..|...+....+.+...+...+ + ..+..|..
T Consensus 372 ~~~l~-~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 372 ARTIG-ARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY 409 (662)
T ss_dssp EEEEE-SCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred eEEee-cCCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence 44333 3344444444555544444443 2 34555544
No 188
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.65 E-value=7.6e-12 Score=107.43 Aligned_cols=276 Identities=10% Similarity=0.045 Sum_probs=184.0
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee-cccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF-SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN 97 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 97 (335)
.....+.++.++++|.+.++...++.|.+||.. ++...... .....+..+++.+++ .+..+...++.+..+|.. +
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLG--DIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS--CEEEEETTTTEEEEECTT-S
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCC--CEEEEecCCCeEEEECCC-C
Confidence 455678999999999988888889999999987 54332111 112345566665443 344444456789999987 5
Q ss_pred ceEe-eecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe--cCCcceEEECCCCCEEEEEEcCCeEEE
Q psy16316 98 KYIR-YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV--SGSRPIAAFDPEGLIFGVGVNSDTIKL 174 (335)
Q Consensus 98 ~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~i 174 (335)
+... .+......+.++++.++++++++...++.|..+|.. ++....... ......++++++++++++...++.|..
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 5432 233344678999999999988888778899999987 444322111 122345678899998877766788999
Q ss_pred EEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcE
Q psy16316 175 YDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKY 254 (335)
Q Consensus 175 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 254 (335)
+|.. . ....+.. ........++++++++...++...++.|..|+. +++... +.. ......+..++++|+|++
T Consensus 172 ~~~~-g---~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~d~~g~l 243 (300)
T 2qc5_A 172 ITNT-G---KLEEYPL-PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE-YDI-PTPNARPHAITAGKNSEI 243 (300)
T ss_dssp ECTT-C---CEEEEEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECSTTCE
T ss_pred ECCC-C---cEEEeeC-CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE-EEC-CCCCCCceEEEECCCCCE
Confidence 9873 1 1222221 122234578999999987777666778999998 444332 211 112345788999999998
Q ss_pred EEEEeCCCcEEEEECCCCeeEE-EeCCCCCCCeEEEEeCCCCcEEEeeeceeEEeccc
Q psy16316 255 VISGSTDGRIHIWNAEKGFKVC-VLDADHPSPVQTIQFNPKFNMMASACTNLAFWIPT 311 (335)
Q Consensus 255 l~tgs~dg~v~iwd~~~~~~~~-~~~~~h~~~v~~v~~sp~~~~~~s~~~~~~~w~~~ 311 (335)
+++...++.|..|+.. +.... .+. .....+.++++.|+|.+.++.. + .++..+
T Consensus 244 ~v~~~~~~~i~~~~~~-g~~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~ 297 (300)
T 2qc5_A 244 WFTEWGANQIGRITND-NTIQEYQLQ-TENAEPHGITFGKDGSVWFALK-C-KIGKLN 297 (300)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECC-STTCCCCCEEECTTSCEEEECS-S-EEEEEE
T ss_pred EEeccCCCeEEEECCC-CcEEEEECC-ccCCccceeEeCCCCCEEEEcc-C-ceEEeC
Confidence 8887778899999984 43322 232 2345678899999998877765 4 555433
No 189
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.63 E-value=1.2e-12 Score=113.49 Aligned_cols=248 Identities=10% Similarity=0.073 Sum_probs=160.9
Q ss_pred eccCCccEEEEEECCCCCEEEE-------ecCCCeEEEEEccCCcceeeee----cccccceEEEEecCCCeeEEeecCC
Q psy16316 17 FRENTDKITSIDYSADGLLLIS-------CSEDDQIVIYDCELGTNKRTVF----SKKYGVDLIRFTHAKQAAIHASTKI 85 (335)
Q Consensus 17 ~~~h~~~V~~v~~s~~g~~las-------gs~Dg~i~lwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (335)
+...-....++.|+++|.++++ +..++.|.+||..+++...... .....+..+.+.++....+++..
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-- 90 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-- 90 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET--
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC--
Confidence 3444556789999999998888 6788999999988776532211 12344666777665223333332
Q ss_pred CCeEEEEEcCCCceEee-ecC----CCCCeEEEEECCCCCEEEEeeCC---------------CcEEEeecCCCCceeEE
Q psy16316 86 DDTVRYLSLHDNKYIRY-FPG----HTKKVNSLCLSPIDDTFISGSYD---------------KTVRLWDLRSPNCQGIM 145 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~-~~~----H~~~V~~~~~~~~~~~l~s~s~D---------------~~i~vWd~~~~~~~~~~ 145 (335)
.+.+.+||.. ++.... ... +...+.++++.+++++.++...+ +.|..||.. ++.....
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 3478889988 665443 221 12458899999999888887665 567777765 4443332
Q ss_pred EecCCcceEEEC----CCCCE-EEEEEcCCeEEEEEccCCCC-CceeeEEeccCCC-ccceEEEEccCCCEEEEEeCCCe
Q psy16316 146 HVSGSRPIAAFD----PEGLI-FGVGVNSDTIKLYDVRSFDK-GPFSNFKFAAEKE-CDWTGIKFSADGKYILISTNGSI 218 (335)
Q Consensus 146 ~~~~~~~~~~~~----~~~~~-~~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~~~~~ 218 (335)
........++++ ++++. +++...++.|.+||+..... .....+....... ....+++++++|+++++...++.
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 222233456778 88854 45555678999999762110 0001111111111 33567999999998888778889
Q ss_pred EEEEECCCCeeeeeecccccCCCCceEEEEcCCCc-EEEEEeCCCcEEEEECCC
Q psy16316 219 IRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK-YVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 219 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~tgs~dg~v~iwd~~~ 271 (335)
|..||..+++....+.. +...+.+++|+|+++ ++++...++.|..|+...
T Consensus 249 i~~~d~~~g~~~~~~~~---~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIRC---PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCBSCSEEEEC---SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCCcEeEEEeC---CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999987766555532 235678899999999 555666678899999763
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.61 E-value=2.4e-12 Score=110.08 Aligned_cols=216 Identities=8% Similarity=0.008 Sum_probs=159.5
Q ss_pred CCCCEEEEecCCCeEEEEEccCCcceeeeeccc-ccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCC-C
Q psy16316 31 ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKK-YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHT-K 108 (335)
Q Consensus 31 ~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~-~ 108 (335)
..+++|++++.|+.|.+||.++++.+..+..+. ..+..+.+.++++. +++ .++.+..+|. +++.+..+..+. .
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~i--lvs--~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEI--LFS--YSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCE--EEE--CBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCE--EEe--CCCCEEEECC-CCCEEEEEcCCCCc
Confidence 346799999999999999999999888876654 46777888877653 333 3788999999 788888887653 5
Q ss_pred CeEEEEECCCCCEEEEeeC-CCcEEEeecCCCCceeEEEecCC-------cceEEECCCCCEEEEEEcCCeEEEEEccCC
Q psy16316 109 KVNSLCLSPIDDTFISGSY-DKTVRLWDLRSPNCQGIMHVSGS-------RPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180 (335)
Q Consensus 109 ~V~~~~~~~~~~~l~s~s~-D~~i~vWd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~ 180 (335)
.+.++.+.++|+.+++.+. ++.|..+|. .++....+..... ...+...++|+++++...++.|..||.. .
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 7889999999999999887 777877875 5555444432211 1234678899999999999999999976 2
Q ss_pred CCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccccc---CCCCceEEEEcCCCcEEEE
Q psy16316 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN---NKGCPLEASFTPDSKYVIS 257 (335)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~t 257 (335)
+ ..-.+.. .....++...++++.++++..++.|..+|..+++.+.++..... ....+..+...|+|..+++
T Consensus 156 ~--~~w~~~~----~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~ 229 (276)
T 3no2_A 156 Q--LLNSVKL----SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYIC 229 (276)
T ss_dssp C--EEEEEEC----SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEE
T ss_pred C--EEEEEEC----CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEE
Confidence 2 2222221 12234577889999999988888999999999998887753211 1233567788899988888
Q ss_pred Ee
Q psy16316 258 GS 259 (335)
Q Consensus 258 gs 259 (335)
..
T Consensus 230 ~~ 231 (276)
T 3no2_A 230 NW 231 (276)
T ss_dssp EE
T ss_pred ec
Confidence 74
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.61 E-value=9.2e-13 Score=111.72 Aligned_cols=238 Identities=8% Similarity=0.019 Sum_probs=155.4
Q ss_pred cceEEEEecCCCeeEEe-ecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCcee
Q psy16316 65 GVDLIRFTHAKQAAIHA-STKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG 143 (335)
Q Consensus 65 ~~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~ 143 (335)
....+++.+++. +.+ +...++.|.+|+..+.........+...+.++++.++++++++.. ++.|.+||........
T Consensus 25 ~p~~i~~~~~g~--l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGN--VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCC--EEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCC--EEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee
Confidence 445566666543 444 445678899998766543332233445788999999998777766 8999999987654322
Q ss_pred EEEec-CCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEE
Q psy16316 144 IMHVS-GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTF 222 (335)
Q Consensus 144 ~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~ 222 (335)
..... .....++++++++++++...++.|.+|+...... . . ..........+++++|+++++++...++.|.+|
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--~--~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~ 176 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--T--V-LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL 176 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC--E--E-CCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEE
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee--E--e-eccccCCCceeEEEeCCCCEEEEECCCCEEEEE
Confidence 11111 2234578899999888887788999997643211 1 1 111111234679999999977776677899999
Q ss_pred ECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee
Q psy16316 223 DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 223 d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
|........... .....+..++++|+|.++++...++.|.+|+........ ....+...+..++++|+|.++++..
T Consensus 177 ~~~~~~~~~~~~---~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 177 EAESNNQVVLPF---TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDRTVYVADR 252 (270)
T ss_dssp CTTTCCEEECCC---SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTCCEEEEEG
T ss_pred ecCCCceEeecc---cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCCCEEEEEC
Confidence 988765433221 122457789999999888888888999999986544332 3333445789999999999877775
Q ss_pred c--eeEEecccccc
Q psy16316 303 T--NLAFWIPTYLS 314 (335)
Q Consensus 303 ~--~~~~w~~~~~~ 314 (335)
+ .|+++.+..++
T Consensus 253 ~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 253 GNDRVVKLTSLEHH 266 (270)
T ss_dssp GGTEEEEECCCGGG
T ss_pred CCCEEEEEcCCCcc
Confidence 4 46666554443
No 192
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.61 E-value=2.2e-12 Score=124.87 Aligned_cols=260 Identities=10% Similarity=0.039 Sum_probs=166.7
Q ss_pred CCCCEEEEecCC-Ce--EEEEEc--cCCcceeeeec-------ccccceEEEEecCCCeeEEeecCC---CCeEEEEEcC
Q psy16316 31 ADGLLLISCSED-DQ--IVIYDC--ELGTNKRTVFS-------KKYGVDLIRFTHAKQAAIHASTKI---DDTVRYLSLH 95 (335)
Q Consensus 31 ~~g~~lasgs~D-g~--i~lwd~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~---d~~i~~~~~~ 95 (335)
|+|++++-...+ +. -.||-. ..++. +.+.. +...+..++|+|++....+.+... ...|++||+.
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEA-RVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCC-EEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCc-EEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 889877654432 22 145544 33332 22211 223467889999887655544321 1289999999
Q ss_pred CCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCc----------------EEEeecCCCCceeEE--EecC-C--cceE
Q psy16316 96 DNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKT----------------VRLWDLRSPNCQGIM--HVSG-S--RPIA 154 (335)
Q Consensus 96 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~----------------i~vWd~~~~~~~~~~--~~~~-~--~~~~ 154 (335)
+++.......+ ..+.+++|+|||+.|+.++.|+. |++|++.++...... .... . ....
T Consensus 160 tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~ 238 (710)
T 2xdw_A 160 GAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGA 238 (710)
T ss_dssp TTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred CCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEE
Confidence 99877643322 23678999999999999988876 999999887643222 2211 1 2356
Q ss_pred EECCCCCEEEEEEc-----CCeEEEEEccC------CCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC----CeE
Q psy16316 155 AFDPEGLIFGVGVN-----SDTIKLYDVRS------FDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG----SII 219 (335)
Q Consensus 155 ~~~~~~~~~~~~~~-----d~~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~----~~i 219 (335)
.++|+|++++..+. +..+.+||+.. ... ....+.. ...... -.|+|+|..|+..++. ..|
T Consensus 239 ~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~l~~---~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l 313 (710)
T 2xdw_A 239 ELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-KWVKLID---NFEGEY-DYVTNEGTVFTFKTNRHSPNYRL 313 (710)
T ss_dssp EECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-CCEEEEC---SSSSCE-EEEEEETTEEEEEECTTCTTCEE
T ss_pred EEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-ceEEeeC---CCCcEE-EEEeccCCEEEEEECCCCCCCEE
Confidence 89999998887764 56899999875 211 1222221 111222 3588999988877653 369
Q ss_pred EEEECCCCe--eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCc--EEEEECCCCeeEEEeCCCCCCCeEEEEeCCCC
Q psy16316 220 RTFDAYNGQ--CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGR--IHIWNAEKGFKVCVLDADHPSPVQTIQFNPKF 295 (335)
Q Consensus 220 ~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~--v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~ 295 (335)
.+||+.+++ ..+.+..+.. ...+..++|++++.++++...|+. |++|+..++.....+.. +.+.+..++++|++
T Consensus 314 ~~~d~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~-~~~~v~~~~~s~d~ 391 (710)
T 2xdw_A 314 INIDFTDPEESKWKVLVPEHE-KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPL-EVGSVVGYSGQKKD 391 (710)
T ss_dssp EEEETTSCCGGGCEEEECCCS-SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECC-CSSEEEEEECCTTC
T ss_pred EEEeCCCCCcccceeccCCCC-CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCC-CCceEEEEecCCCC
Confidence 999998764 2234433221 123556888888889999999985 56677766765555643 57788999999998
Q ss_pred cEEE
Q psy16316 296 NMMA 299 (335)
Q Consensus 296 ~~~~ 299 (335)
..++
T Consensus 392 ~~l~ 395 (710)
T 2xdw_A 392 TEIF 395 (710)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 7555
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.60 E-value=7.9e-13 Score=113.06 Aligned_cols=214 Identities=14% Similarity=0.137 Sum_probs=159.7
Q ss_pred eEEeecCCCCeEEEEEcCCCceEeeecCCC-CCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec--CCcceE
Q psy16316 78 AIHASTKIDDTVRYLSLHDNKYIRYFPGHT-KKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS--GSRPIA 154 (335)
Q Consensus 78 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~-~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~--~~~~~~ 154 (335)
.++++++.++.|.+||.++++.+..+..+. ..+.++.+.|+|++++ +.++.|..||. +++....+... ......
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~ 82 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTA 82 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEE
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccccc
Confidence 456677789999999999999999888776 5789999999999888 45788999998 77766555443 123346
Q ss_pred EECCCCCEEEEEEc-CCeEEEEEccCCCCCceeeEEeccC---CCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeee
Q psy16316 155 AFDPEGLIFGVGVN-SDTIKLYDVRSFDKGPFSNFKFAAE---KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL 230 (335)
Q Consensus 155 ~~~~~~~~~~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~ 230 (335)
.+.++|+++++.+. ++.+..+|.. ......+..... .......+++.++|+++++...++.|..||.. |+.+
T Consensus 83 ~~~~dG~~lv~~~~~~~~v~~vd~~---Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 83 RILPDGNALVAWCGHPSTILEVNMK---GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EECTTSCEEEEEESTTEEEEEECTT---SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred EECCCCCEEEEecCCCCEEEEEeCC---CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 78899999998877 6777777652 222223322111 11123457889999999999999999999998 8887
Q ss_pred eeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCC-----CCCCeEEEEeCCCCcEEEeee
Q psy16316 231 QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD-----HPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~-----h~~~v~~v~~sp~~~~~~s~~ 302 (335)
.++... ..+..+.+.|+++.+++++.+++|..+|..++..+..+... ....+..++.-|+|.++++..
T Consensus 159 w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 159 NSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 776542 34566888999999999999999999999989887766421 112367888899999888773
No 194
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.59 E-value=9.2e-13 Score=115.97 Aligned_cols=225 Identities=11% Similarity=0.094 Sum_probs=147.2
Q ss_pred ccEEEEEECCCCCEEEEecCC---C--eEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecC------------
Q psy16316 22 DKITSIDYSADGLLLISCSED---D--QIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTK------------ 84 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~D---g--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 84 (335)
..+..+.|||||++||.++.+ + .|.+||+++++...... ... +..++|++++...++.+..
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 457889999999999988754 3 37778888776544332 233 8889999988765555421
Q ss_pred -------------CCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCC-------cEEEeecCCCCceeE
Q psy16316 85 -------------IDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDK-------TVRLWDLRSPNCQGI 144 (335)
Q Consensus 85 -------------~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~-------~i~vWd~~~~~~~~~ 144 (335)
....+.+||+.+++.++.+.. . .+..+.|+|++ ++++++.+. ...+|.+.+++...+
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l 213 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKM 213 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEe
Confidence 125688899988877455544 3 78899999999 888886652 345555444433333
Q ss_pred EEecCCcceEEECCCCCEEEEEEcC--------CeEEEEEccCCCCCceeeEEeccCCCccceE-EEEccCCCEEEEEeC
Q psy16316 145 MHVSGSRPIAAFDPEGLIFGVGVNS--------DTIKLYDVRSFDKGPFSNFKFAAEKECDWTG-IKFSADGKYILISTN 215 (335)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~d--------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~l~~~~~ 215 (335)
... .....++|+|+.++.++.+ ..|.+|| .. ... .........+.. +.|+ ++ ++++++.
T Consensus 214 ~~~---~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~---~~~--~l~~~~~~~~~~~~~~s-dg-~~~~~~~ 281 (347)
T 2gop_A 214 FEK---VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GK---EVM--GILDEVDRGVGQAKIKD-GK-VYFTLFE 281 (347)
T ss_dssp EEE---ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SS---CEE--ESSTTCCSEEEEEEEET-TE-EEEEEEE
T ss_pred ccC---cceeeECCCCCEEEEEEccccCCccccceEEEEC--CC---ceE--eccccCCcccCCccEEc-Cc-EEEEEec
Confidence 222 2333448999888776644 3677777 21 111 122222344554 8899 88 8888888
Q ss_pred CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcE-EEEECC
Q psy16316 216 GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRI-HIWNAE 270 (335)
Q Consensus 216 ~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v-~iwd~~ 270 (335)
++.+++| +.+++... +.. ....+..++|+| .++++++.++.. ++|...
T Consensus 282 ~~~~~l~-~~~g~~~~-~~~---~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 282 EGSVNLY-IWDGEIKP-IAK---GRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp TTEEEEE-EESSSEEE-EEC---SSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred CCcEEEE-EcCCceEE-Eec---CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9999999 77655433 322 234567889999 677787777765 777765
No 195
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.58 E-value=3e-11 Score=113.33 Aligned_cols=283 Identities=12% Similarity=0.068 Sum_probs=184.1
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEcc--CCcceeeeecccccceEEEEe----cCCCeeEEeecC
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCE--LGTNKRTVFSKKYGVDLIRFT----HAKQAAIHASTK 84 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 84 (335)
.++...+... ..+..+.|+|||++|++++.|+.|.+||+. +.+....+... .....++++ +++...+ .+.-
T Consensus 187 ~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~-v~n~ 263 (567)
T 1qks_A 187 YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAI-AGAY 263 (567)
T ss_dssp CCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEE-EEEE
T ss_pred CeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEE-EEEc
Confidence 3444455433 346789999999999999999999999995 67666665442 235677888 4555444 4445
Q ss_pred CCCeEEEEEcCCCceEeeecC----------CCC-CeEEEEECCCCC-EEEEeeCCCcEEEeecCCCCceeEEEe--cCC
Q psy16316 85 IDDTVRYLSLHDNKYIRYFPG----------HTK-KVNSLCLSPIDD-TFISGSYDKTVRLWDLRSPNCQGIMHV--SGS 150 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~~~~~~~----------H~~-~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~--~~~ 150 (335)
.++.+.++|..+.+.++.+.- |.. .+..+..++++. .+++...+|.|.++|........+... ...
T Consensus 264 ~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~ 343 (567)
T 1qks_A 264 WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERF 343 (567)
T ss_dssp ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSS
T ss_pred cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecccc
Confidence 679999999999988877642 222 677888888765 566667789999999876543332222 222
Q ss_pred cceEEECCCCCEEEEEE-cCCeEEEEEccCCCCCceeeEEeccCCCccceEEE-EccCCCEEEE-Ee-CCCeEEEEECCC
Q psy16316 151 RPIAAFDPEGLIFGVGV-NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIK-FSADGKYILI-ST-NGSIIRTFDAYN 226 (335)
Q Consensus 151 ~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~l~~-~~-~~~~i~i~d~~~ 226 (335)
.....|+|+++++.++. .++.|.++|+.+.. .............+-.+.. ++|++..+.+ +. .++.|.++|..+
T Consensus 344 ~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k--l~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 344 LHDGGLDGSHRYFITAANARNKLVVIDTKEGK--LVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEETTTTE--EEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred ccCceECCCCCEEEEEeCCCCeEEEEECCCCc--EEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 23467999999876655 57899999997632 1111111011111112333 5887555544 43 458999999987
Q ss_pred -------CeeeeeecccccCCCCceEEEEcCCCcEEEEEeC-------CCcEEEEECCCC-----eeE-EEeCC------
Q psy16316 227 -------GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST-------DGRIHIWNAEKG-----FKV-CVLDA------ 280 (335)
Q Consensus 227 -------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~-------dg~v~iwd~~~~-----~~~-~~~~~------ 280 (335)
.+.++++.... .....+.++|++++|.+... ...|.++|..+. .+. ..++.
T Consensus 422 ~~~~~~~~kvv~~i~~~g---~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~ 498 (567)
T 1qks_A 422 EGHPDNAWKILDSFPALG---GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI 498 (567)
T ss_dssp TTCTTTBTSEEEEEECSC---SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTC
T ss_pred CCCccccCEEEEEEecCC---CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccccc
Confidence 55666665421 12244789999998887663 358999998765 221 23321
Q ss_pred -CCCCCeEEEEeCCCCcEEEee
Q psy16316 281 -DHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 281 -~h~~~v~~v~~sp~~~~~~s~ 301 (335)
.-...+..+.|+|+|..+..+
T Consensus 499 ~~~~~~~~~~~~~~~G~~~~~s 520 (567)
T 1qks_A 499 TEGQPRVVQGEFNKDGTEVWFS 520 (567)
T ss_dssp CSSCCEEEEEEECTTSSEEEEE
T ss_pred CCCCcceEeeeECCCCCEEEEE
Confidence 123578899999999765543
No 196
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.58 E-value=7.3e-13 Score=128.88 Aligned_cols=247 Identities=12% Similarity=0.071 Sum_probs=153.9
Q ss_pred cCCccEEEEEECCCCCEEEEecCC-----CeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCC--------
Q psy16316 19 ENTDKITSIDYSADGLLLISCSED-----DQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI-------- 85 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~D-----g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 85 (335)
+|+..+..++|||||++||.++.+ .+|++||+++++..... .....+..++|+++ ...++.+...
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 455578899999999999887654 46999999998765431 12222356789988 6554443211
Q ss_pred ----CCeEEEEEcCCCce--Eeee--cCCCCCeEEEEECCCCCEEEEeeCCC-----cEEEeecCCC--C-ceeEEEecC
Q psy16316 86 ----DDTVRYLSLHDNKY--IRYF--PGHTKKVNSLCLSPIDDTFISGSYDK-----TVRLWDLRSP--N-CQGIMHVSG 149 (335)
Q Consensus 86 ----d~~i~~~~~~~~~~--~~~~--~~H~~~V~~~~~~~~~~~l~s~s~D~-----~i~vWd~~~~--~-~~~~~~~~~ 149 (335)
...|.+|++.++.. ...+ ..|...+.++.|+|+|++|+..+.++ .|.+||+.++ . ...+.....
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 317 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK 317 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence 23488999877652 2333 33444688999999999888877554 8999999876 4 332222221
Q ss_pred CcceEEECCCCCEEEEEEcC----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECC
Q psy16316 150 SRPIAAFDPEGLIFGVGVNS----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAY 225 (335)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~ 225 (335)
.. ...+.|++..++..+.+ ..|.+||+.... .....+ ..+....+..++++ ++.++++...++..++|...
T Consensus 318 ~~-~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l--~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 318 AQ-WDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTV--VPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp SC-EEEEEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEE--ECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred ce-EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEE--ecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 11 22244788887777653 458999986531 112222 12223334566776 55566777778876666543
Q ss_pred -CCeeeeeecccccCCCCceEEEEcCCCcEEE----EEeCCCcEEEEECCCCee
Q psy16316 226 -NGQCLQTLAGFLNNKGCPLEASFTPDSKYVI----SGSTDGRIHIWNAEKGFK 274 (335)
Q Consensus 226 -~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~----tgs~dg~v~iwd~~~~~~ 274 (335)
+++..+.+.. .....+..++++|+++.|+ +....++|++||+.++..
T Consensus 393 ~~g~~~~~l~~--~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 393 LDGKPAGAVSL--PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TTSCEEEECBC--SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCCCceeeccC--CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4554555432 1234566788999987655 223457899999988763
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.57 E-value=3.3e-11 Score=107.48 Aligned_cols=255 Identities=11% Similarity=0.002 Sum_probs=166.0
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEec----------CCCeEEEEEccCCcceeeeecc-------cccceEEEEec
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCS----------EDDQIVIYDCELGTNKRTVFSK-------KYGVDLIRFTH 73 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs----------~Dg~i~lwd~~~~~~~~~~~~~-------~~~~~~~~~~~ 73 (335)
+++...+..-..+ .+.|+|||++|+.+. .+++|.+||..+.+....+... ......+.+++
T Consensus 57 ~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp 134 (373)
T 2mad_H 57 GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP 134 (373)
T ss_pred CeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC
Confidence 3444555543343 899999999888875 3788999999988776665432 12345678888
Q ss_pred CCCeeEEeecCCCCeEEEEEcCCCceEee-ecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEEe----
Q psy16316 74 AKQAAIHASTKIDDTVRYLSLHDNKYIRY-FPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMHV---- 147 (335)
Q Consensus 74 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~-~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~~---- 147 (335)
++...+++....++.|.++| .+++.+.. +.-- . ++.+.|++ +.+++.+.||++.++|. +++.......
T Consensus 135 DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~ 208 (373)
T 2mad_H 135 NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML 208 (373)
T ss_pred CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc
Confidence 88776665543468899999 99988877 6421 1 24455654 46677888999999999 7665432210
Q ss_pred cCCcce---EEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccC-------CCccceEEEEccCCCEEEEEeC--
Q psy16316 148 SGSRPI---AAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE-------KECDWTGIKFSADGKYILISTN-- 215 (335)
Q Consensus 148 ~~~~~~---~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~s~~~~~l~~~~~-- 215 (335)
.+..++ ..+.+++..++..+..+.+.+.|+..........+..... .......++++|+++.++++..
T Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~ 288 (373)
T 2mad_H 209 TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ 288 (373)
T ss_pred cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccC
Confidence 111111 1233443333333356788888886421111111111000 0112234789999998887653
Q ss_pred --------CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCc-EEEEEe-CCCcEEEEECCCCeeEEE
Q psy16316 216 --------GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK-YVISGS-TDGRIHIWNAEKGFKVCV 277 (335)
Q Consensus 216 --------~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~tgs-~dg~v~iwd~~~~~~~~~ 277 (335)
++.|.++|+.+++.++++.. ...+..++|+|||+ +++++. .++.|.++|..+++.+..
T Consensus 289 ~~~~~~~~~~~V~VID~~t~~vv~~i~~----g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 289 SAWKLHAAAKEVTSVTGLVGQTSSQISL----GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CcccccCCCCeEEEEECCCCEEEEEEEC----CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 35799999999998888742 12467899999999 777777 589999999999887766
No 198
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.57 E-value=1.7e-11 Score=114.94 Aligned_cols=272 Identities=13% Similarity=0.097 Sum_probs=180.6
Q ss_pred CCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcC--CCceEeeecCCC
Q psy16316 30 SADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH--DNKYIRYFPGHT 107 (335)
Q Consensus 30 s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~--~~~~~~~~~~H~ 107 (335)
++.+.++++...+++|.++|.++++.+..+... ..+..+.+++++...++++ .|+.|.+||+. +.+.+..++...
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~--~dg~V~viD~~~~t~~~v~~i~~G~ 240 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIG--RDGKVNMIDLWMKEPTTVAEIKIGS 240 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEE--TTSEEEEEETTSSSCCEEEEEECCS
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEc--CCCeEEEEECCCCCCcEeEEEecCC
Confidence 455667888899999999999999887776543 3455788999877655543 58899999996 777777776543
Q ss_pred CCeEEEEEC----CCCCEEEEeeC-CCcEEEeecCCCCceeEEEecC------------CcceEEECCCCCEEEE-EEcC
Q psy16316 108 KKVNSLCLS----PIDDTFISGSY-DKTVRLWDLRSPNCQGIMHVSG------------SRPIAAFDPEGLIFGV-GVNS 169 (335)
Q Consensus 108 ~~V~~~~~~----~~~~~l~s~s~-D~~i~vWd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~-~~~d 169 (335)
....++|+ |+|++++.+++ +++|.++|..+.+....+...+ ....+..++++..+++ ...+
T Consensus 241 -~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~ 319 (567)
T 1qks_A 241 -EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 319 (567)
T ss_dssp -EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred -CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence 35799999 69988777664 6999999998887766554321 1223455666554444 4456
Q ss_pred CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeecc--cccCCCCceEE
Q psy16316 170 DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAG--FLNNKGCPLEA 246 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~--~~~~~~~v~~~ 246 (335)
+.|.++|...... .. .... +.......+.|+|++++++++. .++.|.++|+.+++....+.. ...|.+.-..
T Consensus 320 g~v~~vd~~~~~~--~~-v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~- 394 (567)
T 1qks_A 320 GKILLVDYTDLNN--LK-TTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN- 394 (567)
T ss_dssp TEEEEEETTCSSE--EE-EEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-
T ss_pred CeEEEEecCCCcc--ce-eeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-
Confidence 8999999865321 11 1111 1112235688999999988766 467899999999987766542 1122221122
Q ss_pred EEcCC-CcEEEEEe-CCCcEEEEECCC-------CeeEEEeCCCCCCCeEEEEeCCCCcEEEeee---------ceeEEe
Q psy16316 247 SFTPD-SKYVISGS-TDGRIHIWNAEK-------GFKVCVLDADHPSPVQTIQFNPKFNMMASAC---------TNLAFW 308 (335)
Q Consensus 247 ~~sp~-~~~l~tgs-~dg~v~iwd~~~-------~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~---------~~~~~w 308 (335)
-++|+ +..++++. .++.|.++|..+ ...+..++.. ...-..+..||+++.+.... ..+.++
T Consensus 395 ~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~ 473 (567)
T 1qks_A 395 FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL-GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVF 473 (567)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEE
T ss_pred eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC-CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEE
Confidence 26887 45556664 468999999876 4555666532 22223577899998665432 256777
Q ss_pred ccc
Q psy16316 309 IPT 311 (335)
Q Consensus 309 ~~~ 311 (335)
...
T Consensus 474 d~~ 476 (567)
T 1qks_A 474 DIK 476 (567)
T ss_dssp EGG
T ss_pred ECC
Confidence 553
No 199
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.55 E-value=1.4e-11 Score=111.36 Aligned_cols=241 Identities=13% Similarity=0.141 Sum_probs=162.1
Q ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe
Q psy16316 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 101 (335)
.....++|+++|.++++...++.|++||.+++........ ..... +++.++....+.+.......+.+++...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 4688999999999888888899999999987765543333 22233 778877665444433222378888887665444
Q ss_pred ee----cCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEE---Ee--cCCc--ceEEECC-CCCEEEEEEcC
Q psy16316 102 YF----PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM---HV--SGSR--PIAAFDP-EGLIFGVGVNS 169 (335)
Q Consensus 102 ~~----~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~---~~--~~~~--~~~~~~~-~~~~~~~~~~d 169 (335)
.+ ..+...+.+++++|++..|..+..++.|+.||..++...... .. .... .-++++| ++.++++...+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 44 224567889999995444555677899999999876533221 11 1112 2678899 57777777788
Q ss_pred CeEEEEEccCCCCCceeeEEecc------------CCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeeccc
Q psy16316 170 DTIKLYDVRSFDKGPFSNFKFAA------------EKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAGF 236 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~~~~~~~------------~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~ 236 (335)
+.|..|+.... ...+.-.. ..-....+++++|+|++.++-. .++.|+.|++.+++. .++.+.
T Consensus 289 ~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~ 363 (409)
T 3hrp_A 289 SSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQ 363 (409)
T ss_dssp TEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEEC
T ss_pred CEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCC
Confidence 89999987531 11111100 0012246899999999777766 788999999877764 344332
Q ss_pred cc------------CCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 237 LN------------NKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 237 ~~------------~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
.. .-..+..++++|++.++++-..+++|+.+++
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 10 1235788999999989999888899988865
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.54 E-value=1.2e-11 Score=109.66 Aligned_cols=271 Identities=13% Similarity=0.117 Sum_probs=178.2
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEec----------CCCeEEEEEccCCcceeeeeccc-------ccceEEEEe
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCS----------EDDQIVIYDCELGTNKRTVFSKK-------YGVDLIRFT 72 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs----------~Dg~i~lwd~~~~~~~~~~~~~~-------~~~~~~~~~ 72 (335)
.+++...+..-..+ . +.++|||++|..++ .++.|.+||..+.+....+.... .....+.++
T Consensus 68 t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~s 145 (386)
T 3sjl_D 68 AGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT 145 (386)
T ss_dssp TTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC
T ss_pred CCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEc
Confidence 45555666544444 4 99999999887765 36789999999998887765321 245678899
Q ss_pred cCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCC-CCceeEEE-ecC
Q psy16316 73 HAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRS-PNCQGIMH-VSG 149 (335)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~-~~~~~~~~-~~~ 149 (335)
+++...+++....++.|.++|+.+++.+.++.-- .. ..+.|. .+.+++.+.||++-+.++.+ ++...... .-.
T Consensus 146 pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~--g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~ 221 (386)
T 3sjl_D 146 PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP--DC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH 221 (386)
T ss_dssp TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--SE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS
T ss_pred CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC--Cc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceec
Confidence 9887766654445789999999999998887531 11 122343 45777888999999999876 44422110 000
Q ss_pred --Ccce---EEE-CCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEec-------cCCCccceEEEEccCCCEEEEEeC-
Q psy16316 150 --SRPI---AAF-DPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA-------AEKECDWTGIKFSADGKYILISTN- 215 (335)
Q Consensus 150 --~~~~---~~~-~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~s~~~~~l~~~~~- 215 (335)
..++ ..| .++|+++. .+.++++.+.|+.............. .-....+..++++|+++.+++...
T Consensus 222 ~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~ 300 (386)
T 3sjl_D 222 PEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ 300 (386)
T ss_dssp CTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred cccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecc
Confidence 0111 133 46776544 45578999999865321111111100 000112234788999999888753
Q ss_pred ---------CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCc-EEEE-EeCCCcEEEEECCCCeeEEEeCC-CCC
Q psy16316 216 ---------GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK-YVIS-GSTDGRIHIWNAEKGFKVCVLDA-DHP 283 (335)
Q Consensus 216 ---------~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~t-gs~dg~v~iwd~~~~~~~~~~~~-~h~ 283 (335)
+..|.++|+.+++.++++..- ..+..++|+||++ +|++ ...++.|.++|..+++.+..++. +|+
T Consensus 301 ~~~~~hk~~~~~V~viD~~t~kv~~~i~vg----~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p 376 (386)
T 3sjl_D 301 RDEWRHKTASRFVVVLDAKTGERLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG 376 (386)
T ss_dssp CCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS
T ss_pred ccccccCCCCCEEEEEECCCCeEEEEEECC----CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCC
Confidence 357999999999998887532 1355799999996 5555 45689999999999988877753 344
Q ss_pred CCeEEEEeCCC
Q psy16316 284 SPVQTIQFNPK 294 (335)
Q Consensus 284 ~~v~~v~~sp~ 294 (335)
+++.+++|
T Consensus 377 ---~~l~~s~d 384 (386)
T 3sjl_D 377 ---PQVITTAD 384 (386)
T ss_dssp ---CCEEEECC
T ss_pred ---ceeEECCc
Confidence 45566665
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.54 E-value=2.6e-12 Score=124.06 Aligned_cols=257 Identities=8% Similarity=0.037 Sum_probs=161.0
Q ss_pred CCCCCEEEEecCCC---eEEEEEcc--CCcceeeeec-------ccccceEEEEecCCCeeEEe---ecCCCCeEEEEEc
Q psy16316 30 SADGLLLISCSEDD---QIVIYDCE--LGTNKRTVFS-------KKYGVDLIRFTHAKQAAIHA---STKIDDTVRYLSL 94 (335)
Q Consensus 30 s~~g~~lasgs~Dg---~i~lwd~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~d~~i~~~~~ 94 (335)
+|+|.+++-...++ .-.||-.. .++ .+.+.. +...+..++|+|++....+. +++.+..|++||+
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQ-EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSC-CEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCC-cEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 38899887666544 34556543 333 233322 22357888999988765544 3334579999999
Q ss_pred CCCceEeeecCCCCCe--EEEEECCCCCEEEEeeCCCc-------------EEEeecCCCCcee--EEEec---CCcceE
Q psy16316 95 HDNKYIRYFPGHTKKV--NSLCLSPIDDTFISGSYDKT-------------VRLWDLRSPNCQG--IMHVS---GSRPIA 154 (335)
Q Consensus 95 ~~~~~~~~~~~H~~~V--~~~~~~~~~~~l~s~s~D~~-------------i~vWd~~~~~~~~--~~~~~---~~~~~~ 154 (335)
.+++.+. ..+...+ .+++|+|+|+.|+.++.|.. |++|++.++.... +.... ......
T Consensus 155 ~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~ 232 (695)
T 2bkl_A 155 DSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232 (695)
T ss_dssp TTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred CCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence 9987651 1222233 68999999999999999877 9999998876432 22221 123356
Q ss_pred EECCCCCEEEEEEcCC----eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC----CCeEEEEECCC
Q psy16316 155 AFDPEGLIFGVGVNSD----TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN----GSIIRTFDAYN 226 (335)
Q Consensus 155 ~~~~~~~~~~~~~~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~----~~~i~i~d~~~ 226 (335)
.++|+|++++..+.++ .+.++|... .....+.... .......+ ++|. ++..++ ++.|.+||+.+
T Consensus 233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~---~~~~~l~~~~---~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~ 304 (695)
T 2bkl_A 233 DLSRDGKYLFVYILRGWSENDVYWKRPGE---KDFRLLVKGV---GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAK 304 (695)
T ss_dssp EECTTSCCEEEEEEETTTEEEEEEECTTC---SSCEEEEECS---SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTB
T ss_pred EECCCCCEEEEEEeCCCCceEEEEEcCCC---CceEEeecCC---CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCC
Confidence 7999999887776555 555554432 2222222211 12233344 6777 555544 57899999987
Q ss_pred Cee--eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC-CCeeEEEeCCCCCCCeEEEEeCCCCcEEE
Q psy16316 227 GQC--LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE-KGFKVCVLDADHPSPVQTIQFNPKFNMMA 299 (335)
Q Consensus 227 ~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~-~~~~~~~~~~~h~~~v~~v~~sp~~~~~~ 299 (335)
++. .+.+..+. ....+..++|+ ++.++++...|+..+||... ++.....+...+.+.|..++++|++..++
T Consensus 305 ~~~~~~~~l~~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~ 378 (695)
T 2bkl_A 305 PARASWKEIVPED-SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAY 378 (695)
T ss_dssp CSGGGCEEEECCC-SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEE
T ss_pred CCccCCeEEecCC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEE
Confidence 653 13332221 12235567787 77889999999998888654 35444445433366788899999987665
No 202
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.53 E-value=1.1e-10 Score=104.09 Aligned_cols=278 Identities=11% Similarity=-0.044 Sum_probs=172.7
Q ss_pred EECCCCCEEEEecC--CC---eEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec--------CCCCeEEEEEc
Q psy16316 28 DYSADGLLLISCSE--DD---QIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST--------KIDDTVRYLSL 94 (335)
Q Consensus 28 ~~s~~g~~lasgs~--Dg---~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d~~i~~~~~ 94 (335)
...|++.++..+.. .. +|.++|..+++....+..... . .+.+++++...+++.. ..++.|.++|.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~-p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL-P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCC-C-CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 44588887766653 33 889999999987766654332 2 8899998887766642 24678999999
Q ss_pred CCCceEeeecCC-------CCCeEEEEECCCCCEEEEeeC--CCcEEEeecCCCCceeE-EEecCCcceEEECCC-CCEE
Q psy16316 95 HDNKYIRYFPGH-------TKKVNSLCLSPIDDTFISGSY--DKTVRLWDLRSPNCQGI-MHVSGSRPIAAFDPE-GLIF 163 (335)
Q Consensus 95 ~~~~~~~~~~~H-------~~~V~~~~~~~~~~~l~s~s~--D~~i~vWd~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~ 163 (335)
.+.+.+..+.-- ...-..+.++|+|++|+.++. +++|.++| .+++.... +...+. ..+.|+ ...+
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~ 180 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTF 180 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceE
Confidence 988877765421 123458899999999988874 58899999 88876654 433221 233343 3456
Q ss_pred EEEEcCCeEEEEEccCCCCCceeeEE---eccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeeccccc
Q psy16316 164 GVGVNSDTIKLYDVRSFDKGPFSNFK---FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQ--CLQTLAGFLN 238 (335)
Q Consensus 164 ~~~~~d~~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~ 238 (335)
++.+.|+.+.++|. .... ..... ...+..-......+.+++..++..+.++.+.+.|+.+.. ....+.....
T Consensus 181 ~~~~~dg~~~~vd~-~g~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~ 257 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGA--AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSG 257 (373)
T ss_pred EEEcCCCCEEEEEC-CCcE--EEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCC
Confidence 66677888999988 4321 11110 001111011224566666655555567889999987552 2222210000
Q ss_pred -------CCCCceEEEEcCCCcEEEEEeC----------CCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc-EEEe
Q psy16316 239 -------NKGCPLEASFTPDSKYVISGST----------DGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN-MMAS 300 (335)
Q Consensus 239 -------~~~~v~~~~~sp~~~~l~tgs~----------dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~~~s 300 (335)
.......++++|+++.+..... ++.|.++|..+++.+..++.+ .....++|+|+|+ .+.+
T Consensus 258 ~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v 335 (373)
T 2mad_H 258 GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYA 335 (373)
T ss_pred cccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEE
Confidence 0111223789999887666543 357999999998887777543 3568999999998 5555
Q ss_pred ee-ceeEEecccccccc
Q psy16316 301 AC-TNLAFWIPTYLSNH 316 (335)
Q Consensus 301 ~~-~~~~~w~~~~~~~~ 316 (335)
+. .+-.++..+...++
T Consensus 336 ~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 336 LSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EcCCCCeEEEEECCCCC
Confidence 53 23334433444444
No 203
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.53 E-value=1.1e-12 Score=115.92 Aligned_cols=269 Identities=13% Similarity=0.066 Sum_probs=165.2
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEec--CCCeEEEEEccCCcceeeee-------cccccceEEEEecCCCeeEE
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCS--EDDQIVIYDCELGTNKRTVF-------SKKYGVDLIRFTHAKQAAIH 80 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs--~Dg~i~lwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 80 (335)
.+++...+. ..+..++++|+|+++++.. .++.++||.+..++. ..+. .+...+..+++.+++. .++
T Consensus 8 ~~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v 82 (343)
T 2qe8_A 8 RLEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGI-VWM 82 (343)
T ss_dssp CCEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSE-EEE
T ss_pred eeEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCc-EEE
Confidence 455555544 7799999999999999864 234467777664432 2111 1223466777776643 333
Q ss_pred eecCC----CCeEEEEEcCCCceEeeecC------CCCCeEEEEECCCC-CEEEEee---CCCcEEEeecCCCCceeEEE
Q psy16316 81 ASTKI----DDTVRYLSLHDNKYIRYFPG------HTKKVNSLCLSPID-DTFISGS---YDKTVRLWDLRSPNCQGIMH 146 (335)
Q Consensus 81 ~~~~~----d~~i~~~~~~~~~~~~~~~~------H~~~V~~~~~~~~~-~~l~s~s---~D~~i~vWd~~~~~~~~~~~ 146 (335)
+..+. +..|.+||+.+++.++.+.. +...++.+++.+++ ..+++-+ .++.|.+||+.+++......
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec
Confidence 33221 57899999999887766643 22456899999764 4557766 78999999998776544321
Q ss_pred ec-CCcc-eEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCC-eEEEEE
Q psy16316 147 VS-GSRP-IAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS-IIRTFD 223 (335)
Q Consensus 147 ~~-~~~~-~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~-~i~i~d 223 (335)
.. ...+ ...+.++|..+.+...+++++.|.. ..++++++|+++.|+.+...+ .+..++
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~-------------------~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL-------------------GVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCC-------------------CEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceec-------------------ccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 10 0000 0122334544444455555544321 236799999999888776554 566665
Q ss_pred CC---CCe-----eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCC
Q psy16316 224 AY---NGQ-----CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKF 295 (335)
Q Consensus 224 ~~---~~~-----~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~ 295 (335)
.. .+. ....+. .......+..++++++|.++++...++.|.+||..++.........+.....+++|.|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g 302 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG 302 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS
T ss_pred HHHhcCCCCChhhhhcceE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC
Confidence 32 111 000000 001123456799999999999999999999999855654333322234567899999999
Q ss_pred cEEEeeec
Q psy16316 296 NMMASACT 303 (335)
Q Consensus 296 ~~~~s~~~ 303 (335)
.++++...
T Consensus 303 ~l~v~~~~ 310 (343)
T 2qe8_A 303 YLYFDCNQ 310 (343)
T ss_dssp CEEEEECC
T ss_pred cEEEEeCc
Confidence 88777653
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.47 E-value=2.3e-10 Score=98.65 Aligned_cols=235 Identities=14% Similarity=0.100 Sum_probs=151.3
Q ss_pred eeeccCCccEEEEEECCC-CCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 15 KLFRENTDKITSIDYSAD-GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~-g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
..+..+..---+..|+|+ +.++++...++.|..||.+++... . ......+..+++.+++. .+++. ++.+.+||
T Consensus 6 ~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~-~~~~~~~~~i~~~~dG~-l~v~~---~~~l~~~d 79 (297)
T 3g4e_A 6 CVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-R-VTMDAPVSSVALRQSGG-YVATI---GTKFCALN 79 (297)
T ss_dssp EEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-E-EECSSCEEEEEEBTTSS-EEEEE---TTEEEEEE
T ss_pred EEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-E-EeCCCceEEEEECCCCC-EEEEE---CCeEEEEE
Confidence 344555556678999995 557777788999999999877542 2 22345677788887766 33332 56899999
Q ss_pred cCCCceEeeecC----CCCCeEEEEECCCCCEEEEeeCC---------CcEEEeecCC-CCceeEEEecCCcceEEECCC
Q psy16316 94 LHDNKYIRYFPG----HTKKVNSLCLSPIDDTFISGSYD---------KTVRLWDLRS-PNCQGIMHVSGSRPIAAFDPE 159 (335)
Q Consensus 94 ~~~~~~~~~~~~----H~~~V~~~~~~~~~~~l~s~s~D---------~~i~vWd~~~-~~~~~~~~~~~~~~~~~~~~~ 159 (335)
.++++....... ....++.+.+.|+|+++++...+ ..-++|.+.. +..............++++|+
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLD 159 (297)
T ss_dssp TTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTT
T ss_pred CCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCC
Confidence 988765433221 12458899999999977765332 2345555543 232222222222345789999
Q ss_pred CCEE-EEEEcCCeEEEEEccCCCCCceee---EEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecc
Q psy16316 160 GLIF-GVGVNSDTIKLYDVRSFDKGPFSN---FKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG 235 (335)
Q Consensus 160 ~~~~-~~~~~d~~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 235 (335)
++.+ ++.+.++.|.+||+.... +.... +...........+++++++|++.++...++.|..||..+++.+..+..
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~-G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQT-GQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTT-CCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred CCEEEEecCCCCcEEEEeccCCC-CcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 9855 555667899999974211 11211 111111122346899999999888887888999999999988777654
Q ss_pred cccCCCCceEEEEc-CCCcEEEEEe
Q psy16316 236 FLNNKGCPLEASFT-PDSKYVISGS 259 (335)
Q Consensus 236 ~~~~~~~v~~~~~s-p~~~~l~tgs 259 (335)
. ...+.+++|. |+++.|...+
T Consensus 239 p---~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 239 P---VDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp S---SSBEEEEEEESGGGCEEEEEE
T ss_pred C---CCCceEEEEeCCCCCEEEEEc
Confidence 2 3457889998 8877554444
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.47 E-value=4.8e-11 Score=107.48 Aligned_cols=259 Identities=11% Similarity=0.075 Sum_probs=172.5
Q ss_pred cccceeeeccCCccEEEEEECCCCCEEEEec----------CCCeEEEEEccCCcceeeeecc-------cccceEEEEe
Q psy16316 10 SYKVAKLFRENTDKITSIDYSADGLLLISCS----------EDDQIVIYDCELGTNKRTVFSK-------KYGVDLIRFT 72 (335)
Q Consensus 10 ~~~~~~~~~~h~~~V~~v~~s~~g~~lasgs----------~Dg~i~lwd~~~~~~~~~~~~~-------~~~~~~~~~~ 72 (335)
.+++...+..-..+ .+.++|||++|..+. .++.|.++|..+.+....+... ......+.++
T Consensus 108 t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~s 185 (426)
T 3c75_H 108 TGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALT 185 (426)
T ss_dssp TTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEEC
T ss_pred CCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEc
Confidence 44555555543444 899999999887775 4789999999999888776532 1235567888
Q ss_pred cCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEE----Ee
Q psy16316 73 HAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIM----HV 147 (335)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~----~~ 147 (335)
+++...+++....++.|.+.|+.+++.+..+.-- .. ....|++ ..+++.+.||++.+.|+.+++..... ..
T Consensus 186 pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~--g~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v 261 (426)
T 3c75_H 186 PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP--DC--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHT 261 (426)
T ss_dssp TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--SE--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSC
T ss_pred CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC--Cc--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeecc
Confidence 8887766654434789999999999988877631 11 2334443 56677778888888888554433211 11
Q ss_pred cCC--cceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccC-------CCccceEEEEccCCCEEEEEeC---
Q psy16316 148 SGS--RPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE-------KECDWTGIKFSADGKYILISTN--- 215 (335)
Q Consensus 148 ~~~--~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~s~~~~~l~~~~~--- 215 (335)
... .....+.+++..+......+.+.+.|...........+..... .......++++|+++.++++..
T Consensus 262 ~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~ 341 (426)
T 3c75_H 262 EDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRD 341 (426)
T ss_dssp TTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECC
T ss_pred CCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccc
Confidence 100 0123567777766666678899999985421000001110000 0011123789999998877642
Q ss_pred -------CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCc-EEEEEe-CCCcEEEEECCCCeeEEEe
Q psy16316 216 -------GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK-YVISGS-TDGRIHIWNAEKGFKVCVL 278 (335)
Q Consensus 216 -------~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~tgs-~dg~v~iwd~~~~~~~~~~ 278 (335)
++.|.++|+.+.+.++++.... .+..++|+||++ ++++.. .++.|.++|..+++.+..+
T Consensus 342 ~gthk~~s~~VsVID~~T~kvv~~I~vg~----~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 342 EWKHKAASRFVVVLNAETGERINKIELGH----EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEEEEE----EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cccccCCCCEEEEEECCCCeEEEEEECCC----CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 3579999999999988875322 356799999999 888877 5899999999999888776
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.47 E-value=5.3e-11 Score=115.81 Aligned_cols=261 Identities=12% Similarity=0.103 Sum_probs=161.4
Q ss_pred CCCCCEEEEecCCCe---EEEEEccC----Ccceeeeec-------ccccceEEEEecCCCeeEEeecCC-C--CeEEEE
Q psy16316 30 SADGLLLISCSEDDQ---IVIYDCEL----GTNKRTVFS-------KKYGVDLIRFTHAKQAAIHASTKI-D--DTVRYL 92 (335)
Q Consensus 30 s~~g~~lasgs~Dg~---i~lwd~~~----~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-d--~~i~~~ 92 (335)
+|+|++++-...++. ..||-... +...+.+.. +...+..++|+|++....+.+... + ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 389998886665543 56676543 222333211 123567889999887655544321 1 479999
Q ss_pred EcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCc--------------EEEeecCCCCcee--EEEecC---Ccce
Q psy16316 93 SLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKT--------------VRLWDLRSPNCQG--IMHVSG---SRPI 153 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~--------------i~vWd~~~~~~~~--~~~~~~---~~~~ 153 (335)
|+.+++.+... .+...+.+++|+|+ +.|+.++.|+. |++|++.++.... +..... ....
T Consensus 195 dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 272 (741)
T 1yr2_A 195 GVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG 272 (741)
T ss_dssp ETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred ECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence 99999876532 12222358899999 98888887665 8999998766432 222221 1335
Q ss_pred EEECCCCCEEEEEEcC-----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC----CeEEEEEC
Q psy16316 154 AAFDPEGLIFGVGVNS-----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG----SIIRTFDA 224 (335)
Q Consensus 154 ~~~~~~~~~~~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~----~~i~i~d~ 224 (335)
..++|+|++++..+.+ ..|.+||+..........+.. ..... ... ++|+|..|+..++. ..|.+||+
T Consensus 273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~-~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~ 348 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP--DLKAQ-WDF-VDGVGDQLWFVSGDGAPLKKIVRVDL 348 (741)
T ss_dssp EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC--SSSSC-EEE-EEEETTEEEEEECTTCTTCEEEEEEC
T ss_pred EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC--CCCce-EEE-EeccCCEEEEEECCCCCCCEEEEEeC
Confidence 6799999988877654 389999987531010222221 11112 222 45899998887763 45999999
Q ss_pred CCCe-eeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC-CCeeEEEeCCCCCCCeEEEEeCCCCcEEE
Q psy16316 225 YNGQ-CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE-KGFKVCVLDADHPSPVQTIQFNPKFNMMA 299 (335)
Q Consensus 225 ~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~-~~~~~~~~~~~h~~~v~~v~~sp~~~~~~ 299 (335)
.++. ..+.+..+ ....+..++++ ++.++++...|+..+||... ++.....+...+.+.|..++++|++..++
T Consensus 349 ~~~~~~~~~l~~~--~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~ 422 (741)
T 1yr2_A 349 SGSTPRFDTVVPE--SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAY 422 (741)
T ss_dssp SSSSCEEEEEECC--CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEE
T ss_pred CCCccccEEEecC--CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEE
Confidence 8752 33333322 12224456676 56788899999987777554 35455555443467789999999987555
No 207
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.47 E-value=3.7e-11 Score=106.50 Aligned_cols=274 Identities=12% Similarity=0.068 Sum_probs=177.6
Q ss_pred EEECCCCCEEEEecC-----CCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec--------CCCCeEEEEE
Q psy16316 27 IDYSADGLLLISCSE-----DDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST--------KIDDTVRYLS 93 (335)
Q Consensus 27 v~~s~~g~~lasgs~-----Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d~~i~~~~ 93 (335)
....|++..+..... +++|.+.|..+++.+..+.....+ . +.+++++...+.+.. ..++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445799988777755 689999999999988887655444 3 899999887776652 2367899999
Q ss_pred cCCCceEeeecCC-------CCCeEEEEECCCCCEEEEeeC--CCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEE
Q psy16316 94 LHDNKYIRYFPGH-------TKKVNSLCLSPIDDTFISGSY--DKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG 164 (335)
Q Consensus 94 ~~~~~~~~~~~~H-------~~~V~~~~~~~~~~~l~s~s~--D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (335)
..+.+.+..+.-. ...-..+.++|+|++|+.+.. +++|.++|+.+.+....+...+. ...+......++
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~ 193 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFF 193 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeE
Confidence 9999988876421 124557899999998887764 68999999999887766654332 122333345555
Q ss_pred EEEcCCeEEEEEccCCCCCceeeEEeccCC-Ccc-ceEEEEc-cCCCEEEEEeCCCeEEEEECCCCe--eeeeec-----
Q psy16316 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAAEK-ECD-WTGIKFS-ADGKYILISTNGSIIRTFDAYNGQ--CLQTLA----- 234 (335)
Q Consensus 165 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~-~~~-~~~~~~s-~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~----- 234 (335)
+.+.||++.+.++...... .......... ... .....|. ++|++++ .+.++.|+++|+.+.. ....+.
T Consensus 194 ~~~~DG~~~~v~~~~~g~v-~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~ 271 (386)
T 3sjl_D 194 MHCRDGSLAKVAFGTEGTP-EITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEA 271 (386)
T ss_dssp EEETTSCEEEEECCSSSCC-EEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred EECCCCCEEEEECCCCCeE-EEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccc
Confidence 6667777777777542111 1111000000 011 1123554 6776555 5567899999987653 222221
Q ss_pred ----ccccCCCCceEEEEcCCCcEEEEEeC----------CCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc-EEE
Q psy16316 235 ----GFLNNKGCPLEASFTPDSKYVISGST----------DGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN-MMA 299 (335)
Q Consensus 235 ----~~~~~~~~v~~~~~sp~~~~l~tgs~----------dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~~~ 299 (335)
+.. ......++++|+++.+..... ..+|.+.|..+++.+..++.++ .++.++|+|+++ +|.
T Consensus 272 ~~~~g~~--p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly 347 (386)
T 3sjl_D 272 ERADGWR--PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLY 347 (386)
T ss_dssp HHHTTEE--ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEE
T ss_pred ccccccc--CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEE
Confidence 100 111234788998887666532 2579999999998888776543 678999999996 554
Q ss_pred ee---eceeEEecc
Q psy16316 300 SA---CTNLAFWIP 310 (335)
Q Consensus 300 s~---~~~~~~w~~ 310 (335)
++ ++++.++..
T Consensus 348 ~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 348 ALSTGDKTLYIHDA 361 (386)
T ss_dssp EEETTTTEEEEEET
T ss_pred EEcCCCCeEEEEEC
Confidence 43 355666643
No 208
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.43 E-value=1.7e-09 Score=92.53 Aligned_cols=237 Identities=11% Similarity=0.050 Sum_probs=157.0
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee--cccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF--SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN 97 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 97 (335)
+...+.++.++++|.++++...++.|..||.+ ++. ..+. .....+..+.+.+++ .+.++...++.+..+|. ++
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~d~-~g 129 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNG--DIWFTEMNGNRIGRITD-DG 129 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTS--CEEEEETTTTEEEEECT-TC
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCC--CEEEEecCCceEEEECC-CC
Confidence 45779999999999998888888999999986 332 2222 123345666666543 34444445788999998 55
Q ss_pred ceEe-eecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec--CCcceEEECCCCCEEEEEEcCCeEEE
Q psy16316 98 KYIR-YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS--GSRPIAAFDPEGLIFGVGVNSDTIKL 174 (335)
Q Consensus 98 ~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~i 174 (335)
+... ....+...+..+++.+++++.++...++.|..||. +++........ .....+++++++.++++...++.|..
T Consensus 130 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 208 (299)
T 2z2n_A 130 KIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGR 208 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred CEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEE
Confidence 4433 23345567899999999988888777899999998 55543321111 12235678899998887767889999
Q ss_pred EEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcE
Q psy16316 175 YDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKY 254 (335)
Q Consensus 175 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 254 (335)
||. ... ...+.. ......+.+++++++|+..++...++.|..||. +++ +..+.. ......+..+++ +++.+
T Consensus 209 ~~~-~g~---~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~-~~~~~~~~~i~~-~~g~l 279 (299)
T 2z2n_A 209 ITT-SGE---ITEFKI-PTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPI-QIKSAEPHGICF-DGETI 279 (299)
T ss_dssp ECT-TCC---EEEEEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEEC-SSSSCCEEEEEE-CSSCE
T ss_pred ECC-CCc---EEEEEC-CCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeC-CCCCCccceEEe-cCCCE
Confidence 998 321 222211 122344678999999996666657788999998 454 233321 122345778899 98888
Q ss_pred EEEEeCCCcEEEEECCCC
Q psy16316 255 VISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 255 l~tgs~dg~v~iwd~~~~ 272 (335)
+++.+ .+.+..++..+.
T Consensus 280 ~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 280 WFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEEET-TTEEEEEEEC--
T ss_pred EEEec-CCcEEEEEcCcc
Confidence 77765 566777776543
No 209
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.43 E-value=1.2e-10 Score=112.33 Aligned_cols=248 Identities=13% Similarity=0.129 Sum_probs=151.2
Q ss_pred ccCCccEEEEEECCCCCEEE-----EecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCC-------
Q psy16316 18 RENTDKITSIDYSADGLLLI-----SCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI------- 85 (335)
Q Consensus 18 ~~h~~~V~~v~~s~~g~~la-----sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 85 (335)
.+|...+..+.|||||++|| +|+.+.+|++||+++++...... .......++|+ ++...++.+...
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccc
Confidence 35667899999999999988 55666899999999998654311 11113567888 776655544321
Q ss_pred ----CCeEEEEEcCCCce--Eeee--cC-CCCCeEEEEECCCCCEEEE-ee---CCCcEEEeecCCCCc-eeEEEecCCc
Q psy16316 86 ----DDTVRYLSLHDNKY--IRYF--PG-HTKKVNSLCLSPIDDTFIS-GS---YDKTVRLWDLRSPNC-QGIMHVSGSR 151 (335)
Q Consensus 86 ----d~~i~~~~~~~~~~--~~~~--~~-H~~~V~~~~~~~~~~~l~s-~s---~D~~i~vWd~~~~~~-~~~~~~~~~~ 151 (335)
...|.+|++.++.. ...+ .. |...+.++.++|++++|+- .+ .++.|.++|+.++.. ...+......
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 24588999876542 2333 33 5556789999999997643 33 235899999977632 2222222111
Q ss_pred ceEEECCCCCEEEEEE-cC---CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-CC--eEEEEEC
Q psy16316 152 PIAAFDPEGLIFGVGV-NS---DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-GS--IIRTFDA 224 (335)
Q Consensus 152 ~~~~~~~~~~~~~~~~-~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~--~i~i~d~ 224 (335)
....+++++..++..+ .+ ..|..+|+..........+. .+.. .+. .|+++++.|+.... ++ .|++|++
T Consensus 283 ~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~-~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~ 357 (693)
T 3iuj_A 283 DVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI--PERQ-QVL--TVHSGSGYLFAEYMVDATARVEQFDY 357 (693)
T ss_dssp CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--CCCS-SCE--EEEEETTEEEEEEEETTEEEEEEECT
T ss_pred eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe--cCCC-CEE--EEEEECCEEEEEEEECCeeEEEEEEC
Confidence 2222555555544433 32 57888888764321122222 1222 222 89999998877654 33 6889998
Q ss_pred CCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC----CcEEEEECCCCeeE
Q psy16316 225 YNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD----GRIHIWNAEKGFKV 275 (335)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d----g~v~iwd~~~~~~~ 275 (335)
..+. .+.+.. .....+..+.++|+++.|+....+ +.++.||+.++...
T Consensus 358 ~g~~-~~~l~~--p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 358 EGKR-VREVAL--PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp TSCE-EEEECC--SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred CCCe-eEEeec--CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 7543 344321 122344566778888766555444 78999998877543
No 210
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.41 E-value=4.6e-10 Score=97.18 Aligned_cols=237 Identities=12% Similarity=0.069 Sum_probs=150.6
Q ss_pred eeeccCCccEEEEEECCCCC-EEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 15 KLFRENTDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
+.+...........|+|+|+ +++++..++.|..|+. +++ ...+......+..+.+.+++. ++++...++.|.+++
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSD 113 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSC--EEEEETTTTEEEEEC
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCC--EEEEECCCCEEEEEC
Confidence 44555566678899999998 6788888999999998 343 333434445567777777654 444444467888888
Q ss_pred cCCCceEeee---cCC-CCCeEEEEECCCCCEEEE----eeC-------------CCcEEEeecCCCCceeEEEecCCcc
Q psy16316 94 LHDNKYIRYF---PGH-TKKVNSLCLSPIDDTFIS----GSY-------------DKTVRLWDLRSPNCQGIMHVSGSRP 152 (335)
Q Consensus 94 ~~~~~~~~~~---~~H-~~~V~~~~~~~~~~~l~s----~s~-------------D~~i~vWd~~~~~~~~~~~~~~~~~ 152 (335)
.+ ++..... .+. ...++.+.+.++|++.+| |.. .+.|..+|..+++..... ......
T Consensus 114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~ 191 (305)
T 3dr2_A 114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPN 191 (305)
T ss_dssp TT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEE
T ss_pred CC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCc
Confidence 76 5433222 121 235778999999998887 432 256788887666654433 222234
Q ss_pred eEEECCCCCEEEEEEcC------CeEEEEEccCCCCCceeeEE-eccCCCccceEEEEccCCCEEEEEeCCCeEEEEECC
Q psy16316 153 IAAFDPEGLIFGVGVNS------DTIKLYDVRSFDKGPFSNFK-FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAY 225 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~d------~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~ 225 (335)
.++++|+++.+.++... +.|.+||+.... ..... +.........+++++++|++.+ ++.+ .|.+|+.
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~---l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~- 265 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA---LHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS- 265 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTE---EEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEEECT-
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC---ccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEEECC-
Confidence 57899999866666554 689999986421 11111 1111122235689999999544 4444 4999998
Q ss_pred CCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEE
Q psy16316 226 NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd 268 (335)
+++.+..+... ..+..++|+|+++.|..++.++ ++.++
T Consensus 266 ~g~~~~~~~~~----~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 266 DGQLLGHIPTP----GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp TSCEEEEEECS----SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred CCCEEEEEECC----CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 45555555432 1367899999998887777654 44443
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.41 E-value=1.9e-10 Score=99.55 Aligned_cols=234 Identities=12% Similarity=0.105 Sum_probs=147.4
Q ss_pred cceEEEEecCCCeeEEee-------cCCCCeEEEEEcCCCceEeeec----CCCCCeEEEEECCC-CCEEEEeeCCCcEE
Q psy16316 65 GVDLIRFTHAKQAAIHAS-------TKIDDTVRYLSLHDNKYIRYFP----GHTKKVNSLCLSPI-DDTFISGSYDKTVR 132 (335)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~-------~~~d~~i~~~~~~~~~~~~~~~----~H~~~V~~~~~~~~-~~~l~s~s~D~~i~ 132 (335)
....++|.+++. +.++ ...++.+..||..+++...... ++...+.+++++++ ++++++.. ++.|.
T Consensus 19 ~~~~~~~~~~g~--l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 19 GAEGPVFDKNGD--FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL 95 (314)
T ss_dssp TCEEEEECTTSC--EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred CccCceECCCCC--EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence 345667764432 3333 3457889999988777543322 35577999999999 66555554 44799
Q ss_pred EeecCCCCceeE-EEec-----CCcceEEECCCCCEEEEEEcC---------------CeEEEEEccCCCCCceeeEEec
Q psy16316 133 LWDLRSPNCQGI-MHVS-----GSRPIAAFDPEGLIFGVGVNS---------------DTIKLYDVRSFDKGPFSNFKFA 191 (335)
Q Consensus 133 vWd~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~d---------------~~v~iwd~~~~~~~~~~~~~~~ 191 (335)
+||.. ++.... .... .....++++++|+++++...+ +.|..||.. +.......
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----g~~~~~~~- 169 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD----GQMIQVDT- 169 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT----SCEEEEEE-
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC----CCEEEecc-
Confidence 99987 554322 1111 123457889999988877654 456666543 11211111
Q ss_pred cCCCccceEEEEc----cCCCEEEEE-eCCCeEEEEECC-CCeee--eeecccccCC-CCceEEEEcCCCcEEEEEeCCC
Q psy16316 192 AEKECDWTGIKFS----ADGKYILIS-TNGSIIRTFDAY-NGQCL--QTLAGFLNNK-GCPLEASFTPDSKYVISGSTDG 262 (335)
Q Consensus 192 ~~~~~~~~~~~~s----~~~~~l~~~-~~~~~i~i~d~~-~~~~~--~~~~~~~~~~-~~v~~~~~sp~~~~l~tgs~dg 262 (335)
......+++++ |+++.++++ ..++.|.+|+.. +++.. ..+....... ..+..++++++|+++++...++
T Consensus 170 --~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~ 247 (314)
T 1pjx_A 170 --AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp --EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred --CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence 11123678999 999766655 457889999976 44321 1111111121 3467899999999999888889
Q ss_pred cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc-EEEeeec--eeEEecc
Q psy16316 263 RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN-MMASACT--NLAFWIP 310 (335)
Q Consensus 263 ~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~~~s~~~--~~~~w~~ 310 (335)
.|.+||..++.....+.. +...+.+++|+|++. +.++... .+..+.+
T Consensus 248 ~i~~~d~~~g~~~~~~~~-~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 248 HIEVFGPDGGQPKMRIRC-PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EEEEECTTCBSCSEEEEC-SSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EEEEEcCCCCcEeEEEeC-CCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 999999875654444432 456889999999998 4455544 4555544
No 212
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.40 E-value=1.6e-09 Score=94.77 Aligned_cols=238 Identities=10% Similarity=0.029 Sum_probs=145.8
Q ss_pred ccceeeeccCCccEEEEEECCCC-CEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
+++...+........+..|+|++ .++++...++.|.+||.++++... + .....+..+.+.+++.. ++++ +..+
T Consensus 38 ~~~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~v~~i~~~~dg~l-~v~~---~~gl 111 (326)
T 2ghs_A 38 FAGRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-H-ALPFMGSALAKISDSKQ-LIAS---DDGL 111 (326)
T ss_dssp CCCEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E-ECSSCEEEEEEEETTEE-EEEE---TTEE
T ss_pred cceEEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-E-ECCCcceEEEEeCCCeE-EEEE---CCCE
Confidence 34444444334445788999975 567777788999999998775432 2 22345777778776543 2332 3458
Q ss_pred EEEEcCCCceEeeec---CC-CCCeEEEEECCCCCEEEEeeCC------CcEEEeecCCCCceeEEEecCCcceEEECCC
Q psy16316 90 RYLSLHDNKYIRYFP---GH-TKKVNSLCLSPIDDTFISGSYD------KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPE 159 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~---~H-~~~V~~~~~~~~~~~l~s~s~D------~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~ 159 (335)
.+||..+++...... ++ ...++++.++|+|+++++...+ +.|..+| +++.............++++|+
T Consensus 112 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~d 189 (326)
T 2ghs_A 112 FLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPD 189 (326)
T ss_dssp EEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTT
T ss_pred EEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCC
Confidence 899998877543322 11 2468899999999877765432 4455555 3333222222223345789999
Q ss_pred CCEEE-EEEcCCeEEEEEcc--CC-CCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecc
Q psy16316 160 GLIFG-VGVNSDTIKLYDVR--SF-DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG 235 (335)
Q Consensus 160 ~~~~~-~~~~d~~v~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 235 (335)
++.+. +...++.|.+||+. .. .......+...........+++++++|.+.++...++.|..||. +++.+..+..
T Consensus 190 g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~ 268 (326)
T 2ghs_A 190 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV 268 (326)
T ss_dssp SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC
T ss_pred CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC
Confidence 98654 44556899999985 22 11111111111111223467999999998777767788999998 5666555543
Q ss_pred cccCCCCceEEEEc-CCCcEEEEEeC
Q psy16316 236 FLNNKGCPLEASFT-PDSKYVISGST 260 (335)
Q Consensus 236 ~~~~~~~v~~~~~s-p~~~~l~tgs~ 260 (335)
....+.+++|+ |+++.|..++.
T Consensus 269 ---~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 269 ---PGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp ---SCSBEEEEEEESTTSCEEEEEEB
T ss_pred ---CCCCcEEEEEecCCCCEEEEEec
Confidence 22357889998 88776644443
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.40 E-value=5.2e-10 Score=101.03 Aligned_cols=233 Identities=14% Similarity=0.080 Sum_probs=148.5
Q ss_pred ceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCC--cEEEeecCCCCcee
Q psy16316 66 VDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDK--TVRLWDLRSPNCQG 143 (335)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~--~i~vWd~~~~~~~~ 143 (335)
...+++.++. .++++...++.|+.||+.++.......... ... ++|+++++.|+.+..++ .|.++|...+....
T Consensus 133 P~~la~d~~g--~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 133 MWGIAAVGNN--TVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp EEEEEECSTT--EEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred ceEEEEeCCC--CEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 4456666443 355555567899999998887666555432 233 89999999988888766 78888887655433
Q ss_pred EE----E-ecCCcceEEECC-CCCEEEEEEcCCeEEEEEccCCCCCceeeEEe--ccCCC-c-cceEEEEccCCCEEE-E
Q psy16316 144 IM----H-VSGSRPIAAFDP-EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKF--AAEKE-C-DWTGIKFSADGKYIL-I 212 (335)
Q Consensus 144 ~~----~-~~~~~~~~~~~~-~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~--~~~~~-~-~~~~~~~s~~~~~l~-~ 212 (335)
.. . .......++++| ++.+++ +..++.|..||..... ...+.. ..... . +...++|+|++..|+ +
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~---~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQE---VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCC---EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCC---EEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence 32 1 112234578899 555555 6667899999986532 111110 11111 1 112899999644444 4
Q ss_pred EeCCCeEEEEECCCCeeeeeecccc------------cCCCCceEEEEcCCCcEEEEEe-CCCcEEEEECCCCeeEEEeC
Q psy16316 213 STNGSIIRTFDAYNGQCLQTLAGFL------------NNKGCPLEASFTPDSKYVISGS-TDGRIHIWNAEKGFKVCVLD 279 (335)
Q Consensus 213 ~~~~~~i~i~d~~~~~~~~~~~~~~------------~~~~~v~~~~~sp~~~~l~tgs-~dg~v~iwd~~~~~~~~~~~ 279 (335)
....+.|+.|+.... ...+.+.. .....+..++++|+|+++++-+ .+++|+.|+..++.......
T Consensus 285 d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp ETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred eCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 556788999987643 33333221 0123477899999999989888 89999999977776443321
Q ss_pred C-C------------CCCCeEEEEeCCCCcEEEeeeceeEEe
Q psy16316 280 A-D------------HPSPVQTIQFNPKFNMMASACTNLAFW 308 (335)
Q Consensus 280 ~-~------------h~~~v~~v~~sp~~~~~~s~~~~~~~w 308 (335)
. . .-.....++++|++.++++...+-+|+
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir 404 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIR 404 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEE
Confidence 1 0 013467899999988888776554444
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.38 E-value=1.5e-09 Score=93.55 Aligned_cols=222 Identities=12% Similarity=0.107 Sum_probs=143.0
Q ss_pred eEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE
Q psy16316 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH 146 (335)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~ 146 (335)
....|.++... ++.+...++.|..||..+++.. .+. ....+.+++++++++++++. ++.|.+||..+++......
T Consensus 16 Egp~w~~~~~~-l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 16 ESPVWEEVSNS-LLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp EEEEEETTTTE-EEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred cCCeEECCCCE-EEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEe
Confidence 34566654443 3344445788999999877653 332 35679999999999965554 6789999998766543333
Q ss_pred ecC-----CcceEEECCCCCEEEEEEcC---------CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEE
Q psy16316 147 VSG-----SRPIAAFDPEGLIFGVGVNS---------DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILI 212 (335)
Q Consensus 147 ~~~-----~~~~~~~~~~~~~~~~~~~d---------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 212 (335)
... ....+.++|+|+++++.... ....+|.+... ....... ......++++|+|+++.|+.
T Consensus 91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~--g~~~~~~---~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD--HHVKKYF---DQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT--SCEEEEE---EEESBEEEEEECTTSCEEEE
T ss_pred cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC--CCEEEEe---eccccccceEEcCCCCEEEE
Confidence 211 12346789999987765332 33455555431 1111111 11122368999999997765
Q ss_pred E-eCCCeEEEEEC--CCCeee--eeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeE
Q psy16316 213 S-TNGSIIRTFDA--YNGQCL--QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQ 287 (335)
Q Consensus 213 ~-~~~~~i~i~d~--~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~ 287 (335)
+ +.++.|..|+. .++... +.+.........+..++++++|++.++...++.|.+||..++.....+.. +...++
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~-p~~~~t 244 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL-PVDKTT 244 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC-SSSBEE
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC-CCCCce
Confidence 4 55688999986 455431 12221111224567899999999888888888999999988887766654 456789
Q ss_pred EEEeC-CCCcEEE
Q psy16316 288 TIQFN-PKFNMMA 299 (335)
Q Consensus 288 ~v~~s-p~~~~~~ 299 (335)
+++|. |++..|.
T Consensus 245 ~~~f~g~d~~~L~ 257 (297)
T 3g4e_A 245 SCCFGGKNYSEMY 257 (297)
T ss_dssp EEEEESGGGCEEE
T ss_pred EEEEeCCCCCEEE
Confidence 99998 8876443
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.37 E-value=1.7e-11 Score=109.06 Aligned_cols=171 Identities=12% Similarity=0.055 Sum_probs=124.7
Q ss_pred CeEEEEECCCCCEEEEeeCCCcEEEeecCCCC-----------ceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEc
Q psy16316 109 KVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN-----------CQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDV 177 (335)
Q Consensus 109 ~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~ 177 (335)
.++.+++++...++++|+.|+ +++|++...+ ......... +..++| ++++++++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 689999999999999999985 5669865322 112233444 666778 88999998 8899999999
Q ss_pred cCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEE
Q psy16316 178 RSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS 257 (335)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~t 257 (335)
++.... .... .....+..+.+.+. .+++.+.+|.+.+||+.++.... + ...+.+++|||+| ++.
T Consensus 114 ~sl~~~--~~~~---~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~------~~~Vs~v~WSpkG--~~v 177 (388)
T 1xip_A 114 EELSEF--RTVT---SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L------AQNVTSFDVTNSQ--LAV 177 (388)
T ss_dssp SSTTCE--EEEE---ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-E------EESEEEEEECSSE--EEE
T ss_pred hhhhcc--Cccc---eeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-c------cCCceEEEEcCCc--eEE
Confidence 875422 1111 12234556666544 38888999999999999876543 1 2357899999999 788
Q ss_pred EeCCCcEEEEECCCCee--EEEeC--------CCCCCCeEEEEeCCCCcEEEe
Q psy16316 258 GSTDGRIHIWNAEKGFK--VCVLD--------ADHPSPVQTIQFNPKFNMMAS 300 (335)
Q Consensus 258 gs~dg~v~iwd~~~~~~--~~~~~--------~~h~~~v~~v~~sp~~~~~~s 300 (335)
|..||++++|+...+.. ...++ .+|...|.++.|.+++.++++
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999999998876652 33341 147789999999999988875
No 216
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.36 E-value=3.3e-10 Score=102.03 Aligned_cols=271 Identities=13% Similarity=0.060 Sum_probs=172.5
Q ss_pred CCCCEEEEecC-C----CeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec--------CCCCeEEEEEcCCC
Q psy16316 31 ADGLLLISCSE-D----DQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST--------KIDDTVRYLSLHDN 97 (335)
Q Consensus 31 ~~g~~lasgs~-D----g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d~~i~~~~~~~~ 97 (335)
+++.++..... + ++|.+.|..+.+.+..+.....+ .+.+++++...+++.. ..++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 56665444433 3 79999999999998888765554 7899999887776653 24678999999999
Q ss_pred ceEeeecCC-------CCCeEEEEECCCCCEEEEeeC--CCcEEEeecCCCCceeEEEecCCcceEEECCC-CCEEEEEE
Q psy16316 98 KYIRYFPGH-------TKKVNSLCLSPIDDTFISGSY--DKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPE-GLIFGVGV 167 (335)
Q Consensus 98 ~~~~~~~~H-------~~~V~~~~~~~~~~~l~s~s~--D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 167 (335)
+.+..+.-- ......+.++|+|++|+.+.. +++|.+.|+.+.+....+...+. ....|+ ...+++.+
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~ 236 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNC 236 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEc
Confidence 988776421 123457899999998888764 68999999999887665554332 112222 24455555
Q ss_pred cCCeEEEEEccCCCCCceeeE--EeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeee--eeeccc-------
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNF--KFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL--QTLAGF------- 236 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~--~~~~~~------- 236 (335)
.|+++.+.+..... ..... .+.....-....+.+++++..++..+..+.+.+.|....... ..+...
T Consensus 237 ~dG~~~~V~~~~~~--v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~ 314 (426)
T 3c75_H 237 RDGSLARVDFADGE--TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERAD 314 (426)
T ss_dssp TTSSEEEEECCTTC--CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGG
T ss_pred CCCCEEEEECCCCc--EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccc
Confidence 66666666663211 11000 000000001123578999988888788889999998654321 111100
Q ss_pred ccCCCCceEEEEcCCCcEEEEEeC----------CCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc-EEEeee---
Q psy16316 237 LNNKGCPLEASFTPDSKYVISGST----------DGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN-MMASAC--- 302 (335)
Q Consensus 237 ~~~~~~v~~~~~sp~~~~l~tgs~----------dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~~~s~~--- 302 (335)
.........++++|+++.+.+... ++.|.+.|..+.+.+..++.+ ..-+.++|+|+++ ++.++.
T Consensus 315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s 392 (426)
T 3c75_H 315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGT 392 (426)
T ss_dssp TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTT
T ss_pred ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCC
Confidence 000011123789999886555432 357999999999888777543 2467999999998 666664
Q ss_pred ceeEEecc
Q psy16316 303 TNLAFWIP 310 (335)
Q Consensus 303 ~~~~~w~~ 310 (335)
+++.++.+
T Consensus 393 ~~VsVID~ 400 (426)
T 3c75_H 393 QTLHIYDA 400 (426)
T ss_dssp TEEEEEET
T ss_pred CeEEEEEC
Confidence 45666543
No 217
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.35 E-value=3.9e-10 Score=99.90 Aligned_cols=247 Identities=11% Similarity=-0.019 Sum_probs=155.9
Q ss_pred EEEEecCCC----eEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeec--------CCCCeEEEEEcCCCceEee
Q psy16316 35 LLISCSEDD----QIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHAST--------KIDDTVRYLSLHDNKYIRY 102 (335)
Q Consensus 35 ~lasgs~Dg----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d~~i~~~~~~~~~~~~~ 102 (335)
.+++-..++ +|.+.|.++++.+..+.....+ .+.+++++...+++.. ..++.|.+||+.+++.+..
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~ 111 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD 111 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence 444444455 8889999999998888766555 7999999887777653 3478999999999999988
Q ss_pred ecCC-------CCCeEEEEECCCCCEEEEeeC--CCcEEE--eecCCCCceeEEEecC--------CcceEEECCCCCEE
Q psy16316 103 FPGH-------TKKVNSLCLSPIDDTFISGSY--DKTVRL--WDLRSPNCQGIMHVSG--------SRPIAAFDPEGLIF 163 (335)
Q Consensus 103 ~~~H-------~~~V~~~~~~~~~~~l~s~s~--D~~i~v--Wd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 163 (335)
++-+ ......+.++|+|++|+.+.. +..+.+ +|+.+ ...+...+ ....+.+++++.++
T Consensus 112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~ 188 (368)
T 1mda_H 112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLA 188 (368)
T ss_dssp EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCE
T ss_pred EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEE
Confidence 7633 123568899999998888865 467888 99865 12221111 01111222222222
Q ss_pred EE-------------------------------------EEcCCeEEEEEccCCCCCceeeEEeccC-------CCccce
Q psy16316 164 GV-------------------------------------GVNSDTIKLYDVRSFDKGPFSNFKFAAE-------KECDWT 199 (335)
Q Consensus 164 ~~-------------------------------------~~~d~~v~iwd~~~~~~~~~~~~~~~~~-------~~~~~~ 199 (335)
.. .+. +.+.+.|................. ....+.
T Consensus 189 ~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~ 267 (368)
T 1mda_H 189 ASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ 267 (368)
T ss_dssp EEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred EEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcce
Confidence 21 112 444445543210000000000000 000111
Q ss_pred EEEEccCCCEEEEEeC---C------CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCc-EEEEEe-CCCcEEEEE
Q psy16316 200 GIKFSADGKYILISTN---G------SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK-YVISGS-TDGRIHIWN 268 (335)
Q Consensus 200 ~~~~s~~~~~l~~~~~---~------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~tgs-~dg~v~iwd 268 (335)
.++++|+++.++++.. + ..+.++|+.+++.++++.... .+..++|+|||+ .+++.. .++.|.++|
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~----~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH----DSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE----EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC----CcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 2789999998887643 2 356699999998888775432 356799999997 567776 599999999
Q ss_pred CCCCeeEEEeCCCCCCCeEEEEeCC
Q psy16316 269 AEKGFKVCVLDADHPSPVQTIQFNP 293 (335)
Q Consensus 269 ~~~~~~~~~~~~~h~~~v~~v~~sp 293 (335)
+.+++.+..++.+ ..-+.+++++
T Consensus 344 ~~t~kvv~~I~vg--~~P~~i~~~~ 366 (368)
T 1mda_H 344 AASDQDQSSVELD--KGPESLSVQN 366 (368)
T ss_dssp SSSCEEEEECCCC--SCCCEEECCC
T ss_pred CCCCcEEEEEECC--CCCCEEEeec
Confidence 9999888877642 2335777765
No 218
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.34 E-value=1.7e-08 Score=86.25 Aligned_cols=232 Identities=11% Similarity=0.052 Sum_probs=153.8
Q ss_pred cceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe-eecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCcee
Q psy16316 65 GVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR-YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG 143 (335)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~ 143 (335)
.+..+.+.+++ .+..+...++.+.++|.. ++... .+..+...+.++++.+++++.++...++.|..+|.. ++...
T Consensus 21 ~p~~i~~d~~g--~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~ 96 (300)
T 2qc5_A 21 GPYGITSSEDG--KVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE 96 (300)
T ss_dssp CEEEEEECTTS--CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CcceeeECCCC--CEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE
Confidence 34455555443 344444457889999887 55443 233445678999999999988887778999999987 54432
Q ss_pred EEEec---CCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEE
Q psy16316 144 IMHVS---GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIR 220 (335)
Q Consensus 144 ~~~~~---~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~ 220 (335)
+... .....++++++++++++...++.|..+|.. . ....+.. ........+++++++++..++...++.|.
T Consensus 97 -~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g---~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 97 -YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G---TIYEYDL-PNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp -EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S---CEEEEEC-SSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred -ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-C---CEEEccC-CCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 2221 223456788999988887767889999875 1 1222221 11223457899999999666666678899
Q ss_pred EEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEe
Q psy16316 221 TFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300 (335)
Q Consensus 221 i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s 300 (335)
.++. +++... +.. ......+..++++|++.++++....+.|.+|+. ++.........+...+..++++|+|.+.++
T Consensus 171 ~~~~-~g~~~~-~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 171 RITN-TGKLEE-YPL-PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp EECT-TCCEEE-EEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EECC-CCcEEE-eeC-CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEe
Confidence 9998 554432 221 122345778999999998888877888999998 444333222234567889999999988777
Q ss_pred ee--ceeEEecc
Q psy16316 301 AC--TNLAFWIP 310 (335)
Q Consensus 301 ~~--~~~~~w~~ 310 (335)
.. +.+..+.+
T Consensus 247 ~~~~~~i~~~~~ 258 (300)
T 2qc5_A 247 EWGANQIGRITN 258 (300)
T ss_dssp ETTTTEEEEECT
T ss_pred ccCCCeEEEECC
Confidence 63 45666654
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.32 E-value=4.8e-09 Score=90.68 Aligned_cols=227 Identities=12% Similarity=0.098 Sum_probs=142.2
Q ss_pred eecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCC
Q psy16316 59 VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS 138 (335)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~ 138 (335)
+...........|.+++.. ++.+...++.+..|+. +++ ...+..+...+..+++.++|+++++...++.|.+||..
T Consensus 40 l~~~~~~~egp~~~~~g~~-l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRT-LVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp EECCCSSEEEEEEEGGGTE-EEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred EecCCcCccCCeEeCCCCE-EEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 3333334556777776553 3344556788999988 444 34555566789999999999977776667899999986
Q ss_pred CCceeEEEe-c----CCcceEEECCCCCEEEE----EEc-------------CCeEEEEEccCCCCCceeeEEeccCCCc
Q psy16316 139 PNCQGIMHV-S----GSRPIAAFDPEGLIFGV----GVN-------------SDTIKLYDVRSFDKGPFSNFKFAAEKEC 196 (335)
Q Consensus 139 ~~~~~~~~~-~----~~~~~~~~~~~~~~~~~----~~~-------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 196 (335)
++....... . .....+.++++|.++++ |.. .+.|..+|..+.. ..... ...
T Consensus 116 g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~---~~~~~----~~~ 188 (305)
T 3dr2_A 116 GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP---LQRMA----DLD 188 (305)
T ss_dssp SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC---CEEEE----EES
T ss_pred CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc---EEEEe----cCC
Confidence 443322211 1 11234788999998886 321 2456666654322 11111 112
Q ss_pred cceEEEEccCCCEEEEEeCC------CeEEEEECCCCeeeeeecccc-cCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 197 DWTGIKFSADGKYILISTNG------SIIRTFDAYNGQCLQTLAGFL-NNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 197 ~~~~~~~s~~~~~l~~~~~~------~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
..++++|+|+++.|+++... +.|+.|++.... +....... .....+..++++++|++.++. .+| |.+|+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~~ 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTG-VCVFDS 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECC-SSE-EEEECT
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEec-CCc-EEEECC
Confidence 33679999999988877665 689999987654 21111110 112345678999999965554 444 999998
Q ss_pred CCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee
Q psy16316 270 EKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 270 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
++.....+.. + ..+..++|+|+++.|..+.
T Consensus 266 -~g~~~~~~~~-~-~~~~~~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 266 -DGQLLGHIPT-P-GTASNCTFDQAQQRLFITG 295 (305)
T ss_dssp -TSCEEEEEEC-S-SCCCEEEECTTSCEEEEEE
T ss_pred -CCCEEEEEEC-C-CceeEEEEeCCCCEEEEEc
Confidence 4655555543 2 3588999999986555443
No 220
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.26 E-value=3.3e-09 Score=102.04 Aligned_cols=260 Identities=12% Similarity=0.117 Sum_probs=167.1
Q ss_pred CCCEEEEecCCCeEEEEEccCCcceeeeecc-c----ccce-EEEEecCCCeeEEeecC----CCCeEEEEEcCCCceEe
Q psy16316 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSK-K----YGVD-LIRFTHAKQAAIHASTK----IDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 32 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~-~----~~~~-~~~~~~~~~~~~~~~~~----~d~~i~~~~~~~~~~~~ 101 (335)
++..++.++.|+.+..+|.++|+.+...... . ..+. .... . ....++..++ .++.+..+|..+++.+-
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v-~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV-V-NGKVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE-E-TTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE-E-CCEEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 3567888899999999999999987665432 1 1111 0011 1 2222332222 36899999999998775
Q ss_pred eecC-------------------------------CCCCeEEEEECCCCCEEEEeeCCCc-------------------E
Q psy16316 102 YFPG-------------------------------HTKKVNSLCLSPIDDTFISGSYDKT-------------------V 131 (335)
Q Consensus 102 ~~~~-------------------------------H~~~V~~~~~~~~~~~l~s~s~D~~-------------------i 131 (335)
.+.. +......+++.|+..++..++.++. |
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 5431 0111125788888888888887764 9
Q ss_pred EEeecCCCCceeEEEecC--------CcceE--EECCCCC---EEEEEEcCCeEEEEEccCCCCCceeeEEec-------
Q psy16316 132 RLWDLRSPNCQGIMHVSG--------SRPIA--AFDPEGL---IFGVGVNSDTIKLYDVRSFDKGPFSNFKFA------- 191 (335)
Q Consensus 132 ~vWd~~~~~~~~~~~~~~--------~~~~~--~~~~~~~---~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~------- 191 (335)
..||..+++....+.... ..+.+ .+..+|. .++.+..++.+.++|.++.+. .....+.
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~--l~~~~~~~~~w~~~ 355 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL--LSAKGIVPQSWTKG 355 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE--EEEEESSCCSSEEE
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE--eccccccccccccc
Confidence 999999998776554321 11111 1222454 677888899999999876432 1100000
Q ss_pred -------------------c----------CCCccceEEEEccCCCEEEEEeC---------------------------
Q psy16316 192 -------------------A----------EKECDWTGIKFSADGKYILISTN--------------------------- 215 (335)
Q Consensus 192 -------------------~----------~~~~~~~~~~~s~~~~~l~~~~~--------------------------- 215 (335)
. .....+..++++|+...+++.+.
T Consensus 356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (689)
T 1yiq_A 356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR 435 (689)
T ss_dssp EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence 0 01113456899999888887632
Q ss_pred ------------------CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEE
Q psy16316 216 ------------------GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCV 277 (335)
Q Consensus 216 ------------------~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~ 277 (335)
++.|+.||+.+++.+-++..... ...-.+...+.+++.|+.||.++.||..+|+++..
T Consensus 436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~----~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~ 511 (689)
T 1yiq_A 436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI----FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWE 511 (689)
T ss_dssp ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS----CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC----ccCccceECCCEEEEECCCCcEEEEECCCCcccee
Confidence 26799999999987766543221 22235666788999999999999999999998877
Q ss_pred eCCCCCCCeEEEEeCCCCcEEE
Q psy16316 278 LDADHPSPVQTIQFNPKFNMMA 299 (335)
Q Consensus 278 ~~~~h~~~v~~v~~sp~~~~~~ 299 (335)
...++.....-+.|..+|++.+
T Consensus 512 ~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 512 QPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EECSSCCCSCCEEEEETTEEEE
T ss_pred eeCCCCcccCceEEEECCEEEE
Confidence 7655444444577888887543
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.26 E-value=1.7e-08 Score=88.23 Aligned_cols=221 Identities=13% Similarity=0.078 Sum_probs=137.8
Q ss_pred eEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE
Q psy16316 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH 146 (335)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~ 146 (335)
...+|.++....+. +...++.|..||..+++... +. +...+.++.+.++++++++. .+ .|.+||..+++......
T Consensus 52 egp~~~~~~~~l~~-~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 52 EGPTFDPASGTAWW-FNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEETTTTEEEE-EEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred cCCeEeCCCCEEEE-EECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence 34567765544433 34447889999998776432 32 34679999999999877765 34 49999998776543322
Q ss_pred ecC-----CcceEEECCCCCEEEEEEcC----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEE-eCC
Q psy16316 147 VSG-----SRPIAAFDPEGLIFGVGVNS----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIS-TNG 216 (335)
Q Consensus 147 ~~~-----~~~~~~~~~~~~~~~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~~ 216 (335)
... ....+.++|+|+++++...+ ....||.+.. +....+.. .....++++|+|+++.++.+ +.+
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~---g~~~~~~~---~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK---GKVTKLFA---DISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET---TEEEEEEE---EESSEEEEEECTTSCEEEEEETTT
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeC---CcEEEeeC---CCcccCCeEEcCCCCEEEEEECCC
Confidence 211 12346789999987755422 2334444432 11221111 11124679999999977665 456
Q ss_pred CeEEEEECC--CC-eee--eeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEe
Q psy16316 217 SIIRTFDAY--NG-QCL--QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQF 291 (335)
Q Consensus 217 ~~i~i~d~~--~~-~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~ 291 (335)
+.|.+|+.. ++ +.. +.+.........+..++++++|.++++...++.|.+||. ++.....+.. +...+.+++|
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~-~~~~~~~~af 278 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV-PGKQTTCPAF 278 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC-SCSBEEEEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC-CCCCcEEEEE
Confidence 789999985 55 321 112111112234567899999998888777788999998 5655555543 4457899999
Q ss_pred C-CCCcEEEe
Q psy16316 292 N-PKFNMMAS 300 (335)
Q Consensus 292 s-p~~~~~~s 300 (335)
+ |++..|..
T Consensus 279 ~g~d~~~L~v 288 (326)
T 2ghs_A 279 IGPDASRLLV 288 (326)
T ss_dssp ESTTSCEEEE
T ss_pred ecCCCCEEEE
Confidence 8 88765543
No 222
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.26 E-value=2.8e-09 Score=102.37 Aligned_cols=260 Identities=11% Similarity=0.066 Sum_probs=169.9
Q ss_pred CCCEEEEecCCCeEEEEEccCCcceeeeecc-c----ccceE-EEEecCCCeeEEeecC----CCCeEEEEEcCCCceEe
Q psy16316 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSK-K----YGVDL-IRFTHAKQAAIHASTK----IDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 32 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~-~----~~~~~-~~~~~~~~~~~~~~~~----~d~~i~~~~~~~~~~~~ 101 (335)
++..++.++.|+.+..+|.++|+.+...... . ..+.. ... .....++.+.. .++.++.+|..+++.+-
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 4567888899999999999999988766543 1 11111 111 12223333222 26899999999998876
Q ss_pred eecCCCC--------------------------------CeEEEEECCCCCEEEEeeCCC-------------------c
Q psy16316 102 YFPGHTK--------------------------------KVNSLCLSPIDDTFISGSYDK-------------------T 130 (335)
Q Consensus 102 ~~~~H~~--------------------------------~V~~~~~~~~~~~l~s~s~D~-------------------~ 130 (335)
.+..... ....+++.|++.++..++.++ +
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence 5542211 113577888888888777664 5
Q ss_pred EEEeecCCCCceeEEEecCC---------cce-EEECCCC---CEEEEEEcCCeEEEEEccCCCCCceeeEEecc-----
Q psy16316 131 VRLWDLRSPNCQGIMHVSGS---------RPI-AAFDPEG---LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA----- 192 (335)
Q Consensus 131 i~vWd~~~~~~~~~~~~~~~---------~~~-~~~~~~~---~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~----- 192 (335)
|..+|..+++....++.... .++ .....+| ..++.+..++.+.++|..+.+. ........
T Consensus 285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~--l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF--ISAKNFVPVNWAS 362 (677)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE--EEEEESSCCSSEE
T ss_pred EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE--eccccccccCccc
Confidence 99999999987765543211 111 2222356 6788888999999999876431 11111100
Q ss_pred ---------------------------CCCccceEEEEccCCCEEEEEeC------------------------------
Q psy16316 193 ---------------------------EKECDWTGIKFSADGKYILISTN------------------------------ 215 (335)
Q Consensus 193 ---------------------------~~~~~~~~~~~s~~~~~l~~~~~------------------------------ 215 (335)
.....+..++++|+...+++...
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 00122446899999988887643
Q ss_pred -------------CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCC
Q psy16316 216 -------------GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADH 282 (335)
Q Consensus 216 -------------~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h 282 (335)
.+.|..||+.+++.+-++... ..+....+.+++..++.|+.||.+++||..+++.+..+..++
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV----SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEeecCCC----CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 167999999999877665421 122334566778888999999999999999999888776555
Q ss_pred CCCeEEEEeCCCCcEEE
Q psy16316 283 PSPVQTIQFNPKFNMMA 299 (335)
Q Consensus 283 ~~~v~~v~~sp~~~~~~ 299 (335)
.....-+.|.++|++++
T Consensus 519 ~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 519 GVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp CCCSCCEEEEETTEEEE
T ss_pred CcccCCEEEEeCCEEEE
Confidence 44445567778886543
No 223
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.25 E-value=1e-10 Score=104.04 Aligned_cols=176 Identities=13% Similarity=0.103 Sum_probs=125.5
Q ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEccCCc---------cee-eeecccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGT---------NKR-TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
+++.+++++...++++|+.|+ +++|+++... ... ....... +..++| +.....+ + .++.+++|
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v--~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLV--S-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEE--E-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEE--E-cCCcEEEE
Confidence 589999999999999999984 5569876443 111 1122333 888888 4433333 3 67899999
Q ss_pred EcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeE
Q psy16316 93 SLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 93 ~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 172 (335)
|+.+.........|...+.++.+.+. .++.++.||+|.+||+..+.... ....+.+++|+|.| ++.|..|+++
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCE
T ss_pred EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcE
Confidence 99877666667778888998887764 38889999999999999777643 34467789999999 5778899999
Q ss_pred EEEEccCCCCCceeeEEe---cc---CCCccceEEEEccCCCEEEE
Q psy16316 173 KLYDVRSFDKGPFSNFKF---AA---EKECDWTGIKFSADGKYILI 212 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~---~~---~~~~~~~~~~~s~~~~~l~~ 212 (335)
++|+...........+.. .. .+...+.++.|.+++.++++
T Consensus 185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 999876532100111100 01 14567889999999998886
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.24 E-value=6.7e-10 Score=97.87 Aligned_cols=234 Identities=12% Similarity=0.029 Sum_probs=150.8
Q ss_pred cCCccEEEEEECCCCCEEEEecC-----CCeEEEEEccCCcceeeeecc------cccceEEEEecCCCeeEEeecC--C
Q psy16316 19 ENTDKITSIDYSADGLLLISCSE-----DDQIVIYDCELGTNKRTVFSK------KYGVDLIRFTHAKQAAIHASTK--I 85 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~-----Dg~i~lwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~ 85 (335)
+|-..+..+.|+++|+++++-.. ++.|.+||+.+++..+.+... ...+..+++.+.....+++..+ .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 46678999999999987665433 679999999988866555322 1235677887654444333321 5
Q ss_pred CCeEEEEEcCCCceEeeecCCCCCeE-EEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEE
Q psy16316 86 DDTVRYLSLHDNKYIRYFPGHTKKVN-SLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG 164 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~~~~H~~~V~-~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (335)
++.|.+||+.+++..+.+.+|..... ...+.+++..+.+.+.|+.++.|... ..-++++|+++.+.
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~-------------~~gia~s~dg~~ly 210 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLG-------------VNGIVLDAENEWLY 210 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCC-------------EEEEEECTTSCEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecc-------------cceeEeccCCCEEE
Confidence 78999999999988888776643211 13344567677778889988877521 23478999998766
Q ss_pred EEEcCC-eEEEEEccCCCCCcee------eEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc
Q psy16316 165 VGVNSD-TIKLYDVRSFDKGPFS------NFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 165 ~~~~d~-~v~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 237 (335)
++...+ .+..++.......... .+... .......+++++++|.++++...++.|..||..+++. ..+...
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~- 287 (343)
T 2qe8_A 211 LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY-KLLVTD- 287 (343)
T ss_dssp EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE-EEEEEC-
T ss_pred EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE-EEEEEC-
Confidence 665544 5555543211100000 00000 0011235699999999988888889999999866653 233221
Q ss_pred cCCCCceEEEEcCCCcEEEEEeCCCcEEEEE
Q psy16316 238 NNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268 (335)
Q Consensus 238 ~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd 268 (335)
.....+..++|+|+++++++.+..+++.+|+
T Consensus 288 ~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 288 EKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp GGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred CceecCCeeEECCCCcEEEEeCccccccccc
Confidence 1234678899999999988888766665554
No 225
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.18 E-value=2.6e-08 Score=89.17 Aligned_cols=225 Identities=16% Similarity=0.171 Sum_probs=139.9
Q ss_pred CCCCEE-EEecCCCeEEEEEccCC----cceeeeecc----c---ccceEEEEecCCCeeEEeecC----CCCeEEEEEc
Q psy16316 31 ADGLLL-ISCSEDDQIVIYDCELG----TNKRTVFSK----K---YGVDLIRFTHAKQAAIHASTK----IDDTVRYLSL 94 (335)
Q Consensus 31 ~~g~~l-asgs~Dg~i~lwd~~~~----~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~----~d~~i~~~~~ 94 (335)
+++++| ++|-.+++|.+.|+.+. +..+++... + .....+.+.+++ ..+.+.+. ..+.+.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 788765 45668899999999765 444444210 1 122334555655 22222222 2378999999
Q ss_pred CCCceEeeecCCCC---CeEEEEECCCCCEEEEee-------------------CCCcEEEeecCCCCceeEEEecC--C
Q psy16316 95 HDNKYIRYFPGHTK---KVNSLCLSPIDDTFISGS-------------------YDKTVRLWDLRSPNCQGIMHVSG--S 150 (335)
Q Consensus 95 ~~~~~~~~~~~H~~---~V~~~~~~~~~~~l~s~s-------------------~D~~i~vWd~~~~~~~~~~~~~~--~ 150 (335)
.+.+.+..++.-.. .-..+.|+|+++.+++.. .+.+|.+||+.+++....+.... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99999988863222 123578899999988885 47999999999876555555431 1
Q ss_pred cce-E--EECCCCCEEEEEE------cCCeEEEEEccCCCCCceeeEEe---ccC---C------------CccceEEEE
Q psy16316 151 RPI-A--AFDPEGLIFGVGV------NSDTIKLYDVRSFDKGPFSNFKF---AAE---K------------ECDWTGIKF 203 (335)
Q Consensus 151 ~~~-~--~~~~~~~~~~~~~------~d~~v~iwd~~~~~~~~~~~~~~---~~~---~------------~~~~~~~~~ 203 (335)
.+. + +++|+++++.++. .+++|.+|.... +.....+. ... . ......+.+
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~---g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED---GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET---TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC---CceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 221 2 3599998876665 456787665542 11111110 000 0 122467899
Q ss_pred ccCCCEEEEEeCC-CeEEEEECCC---Ceeeeeeccc-----------ccCCCCceEEEEcCCCcEEEEEe
Q psy16316 204 SADGKYILISTNG-SIIRTFDAYN---GQCLQTLAGF-----------LNNKGCPLEASFTPDSKYVISGS 259 (335)
Q Consensus 204 s~~~~~l~~~~~~-~~i~i~d~~~---~~~~~~~~~~-----------~~~~~~v~~~~~sp~~~~l~tgs 259 (335)
||||++|.++..+ +.|.+||+.. .+.+..+... ......+..+.++|||++|.++.
T Consensus 329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999999988764 6899999853 3334333211 00012367899999999988887
No 226
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.12 E-value=3.3e-08 Score=95.40 Aligned_cols=224 Identities=13% Similarity=0.111 Sum_probs=140.9
Q ss_pred ccceEEEEecCCCeeEEee---cCCCCeEEEEEcCCCceEee-ecCCCCCeEEEEECCCCCEEEEeeCCCc---------
Q psy16316 64 YGVDLIRFTHAKQAAIHAS---TKIDDTVRYLSLHDNKYIRY-FPGHTKKVNSLCLSPIDDTFISGSYDKT--------- 130 (335)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~---~~~d~~i~~~~~~~~~~~~~-~~~H~~~V~~~~~~~~~~~l~s~s~D~~--------- 130 (335)
..+..++|++++....+.. ++....|+++|+.+++.+.. +.+ ....+++|+ |++.|+.++.|..
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 3567788999887655443 22236899999999986543 221 113578899 9999999888854
Q ss_pred ----EEEeecCCCCceeE--EEecC--C--cceEEECCCCCEEEEEEc----CCeEEEEEccCCCCCceeeEEeccCCCc
Q psy16316 131 ----VRLWDLRSPNCQGI--MHVSG--S--RPIAAFDPEGLIFGVGVN----SDTIKLYDVRSFDKGPFSNFKFAAEKEC 196 (335)
Q Consensus 131 ----i~vWd~~~~~~~~~--~~~~~--~--~~~~~~~~~~~~~~~~~~----d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 196 (335)
|++|++.++..... ..... . .....++|+|++++.... .+.+.++|+..... ....+... ...
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~-~~~~l~~~--~~~ 282 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA-PLLTVQGD--LDA 282 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC-CCEEEECS--SSS
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC-ceEEEeCC--CCc
Confidence 99999987764322 22221 1 234578999998755432 35899999875421 22222211 111
Q ss_pred cceEEEEccCCCEEEEEeCC----CeEEEEECCCCee--eeeecccccCCCCceEEEEcCCCcEEEEEeCCC---cEEEE
Q psy16316 197 DWTGIKFSADGKYILISTNG----SIIRTFDAYNGQC--LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG---RIHIW 267 (335)
Q Consensus 197 ~~~~~~~s~~~~~l~~~~~~----~~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg---~v~iw 267 (335)
.... +++++..|+..++. ..|..+++.++.. .+.+..+ ...+. .|+|++++|+....++ .|++|
T Consensus 283 -~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~ 355 (693)
T 3iuj_A 283 -DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE---RQQVL--TVHSGSGYLFAEYMVDATARVEQF 355 (693)
T ss_dssp -CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC---CSSCE--EEEEETTEEEEEEEETTEEEEEEE
T ss_pred -eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC---CCCEE--EEEEECCEEEEEEEECCeeEEEEE
Confidence 1222 67777777665542 5799999987654 2334332 22333 8999998887766544 68999
Q ss_pred ECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEee
Q psy16316 268 NAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 268 d~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~ 301 (335)
+...+ ....+...+.+.+..++++|++..++..
T Consensus 356 d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~ 388 (693)
T 3iuj_A 356 DYEGK-RVREVALPGLGSVSGFNGKHDDPALYFG 388 (693)
T ss_dssp CTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEE
T ss_pred ECCCC-eeEEeecCCCceEEeeecCCCCCEEEEE
Confidence 98744 3444544455678888889988765533
No 227
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.08 E-value=1.3e-06 Score=73.71 Aligned_cols=251 Identities=9% Similarity=0.049 Sum_probs=149.0
Q ss_pred CEEEEecCCCeEEEEEccCCcce----ee-eecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCC
Q psy16316 34 LLLISCSEDDQIVIYDCELGTNK----RT-VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTK 108 (335)
Q Consensus 34 ~~lasgs~Dg~i~lwd~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~ 108 (335)
.+|..+.. +.|+.+|++..... .. +......+..+++.+.....+. +....+.|..+++........+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~-~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYW-TDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEE-EETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEE-EECCCCEEEEEecCCCCcEEEEECCCC
Confidence 34444443 47888888654321 11 1112234566777765554444 344578899999877654444433335
Q ss_pred CeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECCC-CCEEEEEEc--CCeEEEEEccCCCCC
Q psy16316 109 KVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPE-GLIFGVGVN--SDTIKLYDVRSFDKG 183 (335)
Q Consensus 109 ~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~--d~~v~iwd~~~~~~~ 183 (335)
....+++.+++ ...++-...+.|.++|+............ ....-++++|+ +.++++... .+.|..+++....
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-- 157 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-- 157 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC--
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC--
Confidence 67899999865 45566667789999998754332222211 12234678885 555555443 4688888875321
Q ss_pred ceeeEEeccCCCccceEEEEccCCCEEEEEeC-CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC
Q psy16316 184 PFSNFKFAAEKECDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG 262 (335)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg 262 (335)
...+. ........+++++|++..|..+.. .+.|..+|.........+. ....+..++.. ++.++++....+
T Consensus 158 -~~~~~--~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~----~~~~P~gi~~d-~~~lyva~~~~~ 229 (267)
T 1npe_A 158 -RRILA--QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE----GLQYPFAVTSY-GKNLYYTDWKTN 229 (267)
T ss_dssp -CEEEE--CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE----CCCSEEEEEEE-TTEEEEEETTTT
T ss_pred -cEEEE--ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec----CCCCceEEEEe-CCEEEEEECCCC
Confidence 11111 111123478999998877766554 5789999987544332222 12345566664 445556655678
Q ss_pred cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc
Q psy16316 263 RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296 (335)
Q Consensus 263 ~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 296 (335)
+|.++|..++.....+..+....-..+++.|++.
T Consensus 230 ~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 230 SVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred eEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 9999999988877777543222346788888764
No 228
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.04 E-value=4.3e-08 Score=90.71 Aligned_cols=220 Identities=16% Similarity=0.115 Sum_probs=143.4
Q ss_pred EEeecCCCCeEEEEEcCCCceEeeecC-CCCCeEEEEE-C-CCCCEEEEee------------------CCCcEEEeecC
Q psy16316 79 IHASTKIDDTVRYLSLHDNKYIRYFPG-HTKKVNSLCL-S-PIDDTFISGS------------------YDKTVRLWDLR 137 (335)
Q Consensus 79 ~~~~~~~d~~i~~~~~~~~~~~~~~~~-H~~~V~~~~~-~-~~~~~l~s~s------------------~D~~i~vWd~~ 137 (335)
++.....++.|.+.|+.+.++.+.++- .......+++ . |++.+++.++ .++.+.+.|..
T Consensus 104 lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~ 183 (595)
T 1fwx_A 104 LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD 183 (595)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETT
T ss_pred EEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECC
Confidence 344556788899999999998774431 1245778887 4 8898888874 45689999999
Q ss_pred CCCceeEEEecCCcceEEECCCCCEEEEEEcCC--------------------------------------eEEEEEccC
Q psy16316 138 SPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSD--------------------------------------TIKLYDVRS 179 (335)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--------------------------------------~v~iwd~~~ 179 (335)
+.+....+...+.-..+.++|+|+++.+.+.+. .|.+.|.++
T Consensus 184 t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~ 263 (595)
T 1fwx_A 184 KWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRK 263 (595)
T ss_dssp TTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSG
T ss_pred CCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcc
Confidence 877766666655555678999999887776432 255555543
Q ss_pred CCCCc-eeeEEeccCCCccceEEEEccCCCEEEEEeC-CCeEEEEECCCCeee--------eeecccccCCCCceEEEEc
Q psy16316 180 FDKGP-FSNFKFAAEKECDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQCL--------QTLAGFLNNKGCPLEASFT 249 (335)
Q Consensus 180 ~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~~--------~~~~~~~~~~~~v~~~~~s 249 (335)
..... ...+.... ...++.++|||++++++.. +..|.++|+.+.+.. ..+.........+..++|+
T Consensus 264 ~~~~~~~~~Ipvg~----~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~ 339 (595)
T 1fwx_A 264 EASSLFTRYIPIAN----NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFD 339 (595)
T ss_dssp GGCCSSEEEEEEES----SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEEC
T ss_pred cCCceeEEEEecCC----CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEEC
Confidence 11111 11111111 1246899999999988764 578999999865310 0011111122347889999
Q ss_pred CCCcEEEEEeCCCcEEEEECCC----------CeeEEEeCCCCCCC-----eEEEEeCCCCcEEEeeec
Q psy16316 250 PDSKYVISGSTDGRIHIWNAEK----------GFKVCVLDADHPSP-----VQTIQFNPKFNMMASACT 303 (335)
Q Consensus 250 p~~~~l~tgs~dg~v~iwd~~~----------~~~~~~~~~~h~~~-----v~~v~~sp~~~~~~s~~~ 303 (335)
|+|..+++.-.|+.|.+||+.+ ...+..++- |-.+ -....++|+|++|.+..+
T Consensus 340 ~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 340 GRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp TTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred CCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-ccccccceeccceEeCCCCCEEEEcCC
Confidence 9996667777899999999876 344555543 3222 123456899999888753
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.03 E-value=2.7e-10 Score=101.49 Aligned_cols=188 Identities=15% Similarity=0.115 Sum_probs=102.1
Q ss_pred CCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCC-e
Q psy16316 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKK-V 110 (335)
Q Consensus 32 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~-V 110 (335)
++..+++++.||.|+.||.++|+....... ..+....+..+ ..+++.++.|+.+..||..+++.+..++.+... +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~--g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVE--EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-------CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcC--CCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 577899999999999999999998876654 22222222222 224455567999999999988876665544221 1
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEe
Q psy16316 111 NSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKF 190 (335)
Q Consensus 111 ~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~ 190 (335)
.+.-....+..+++++.|+.|+.||..+++....+.... ...+.|++..+++++.++.+..||.++.+..-......
T Consensus 84 ~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 84 QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp TTCSCC-----CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 110011134578888999999999999988765443322 12345677788888889999999998654221111110
Q ss_pred ccCCCccceEEEEccCC---CEEEEEeCCCeEEEEECCCCeeeeee
Q psy16316 191 AAEKECDWTGIKFSADG---KYILISTNGSIIRTFDAYNGQCLQTL 233 (335)
Q Consensus 191 ~~~~~~~~~~~~~s~~~---~~l~~~~~~~~i~i~d~~~~~~~~~~ 233 (335)
+....++++. ..+++++.++.++.||..+++.+.+.
T Consensus 161 -------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 161 -------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp -------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred -------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence 1122333332 45677888999999999999876544
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.02 E-value=3.7e-10 Score=100.59 Aligned_cols=199 Identities=11% Similarity=0.054 Sum_probs=112.0
Q ss_pred EeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec--CCc-ceEEE
Q psy16316 80 HASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS--GSR-PIAAF 156 (335)
Q Consensus 80 ~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~--~~~-~~~~~ 156 (335)
++.++.|+.+..||..+++.+-.++. +.+.+..+.+++..+++++.|+.|+.||..+++........ ... ....+
T Consensus 12 v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~ 89 (369)
T 2hz6_A 12 LFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCR 89 (369)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC
T ss_pred EEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceE
Confidence 33445689999999999998877776 55666666677778888899999999999887764332211 000 00011
Q ss_pred CCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc
Q psy16316 157 DPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236 (335)
Q Consensus 157 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 236 (335)
. .+..+++++.++.+..||..+.+.. ..+.. .. ...++|++..+++++.++.|+.||..+++....+...
T Consensus 90 ~-~~~~v~~g~~dg~v~a~D~~tG~~~--w~~~~--~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 159 (369)
T 2hz6_A 90 S-SDGILYMGKKQDIWYVIDLLTGEKQ--QTLSS--AF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF 159 (369)
T ss_dssp ------CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred e-cCCEEEEEeCCCEEEEEECCCCcEE--EEecC--CC-----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence 1 2345667778899999998864321 11111 00 1345678888999989999999999999876554321
Q ss_pred ccCCCCceEEEEcCCC---cEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEE-EEeCCCCcE
Q psy16316 237 LNNKGCPLEASFTPDS---KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQT-IQFNPKFNM 297 (335)
Q Consensus 237 ~~~~~~v~~~~~sp~~---~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~-v~~sp~~~~ 297 (335)
. . ...+++++. ..+++++.||.|+.||..++....... ...++.. .++++++..
T Consensus 160 ~-~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~--~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 160 D-Y----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN--YASPVVAFYVWQREGLR 217 (369)
T ss_dssp E-E----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE--CSSCEEEEEECTTSSCE
T ss_pred c-c----cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec--CCCceEEEEEecCCceE
Confidence 1 1 113344432 457778899999999999998776654 3345543 456777754
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.01 E-value=3.5e-07 Score=81.90 Aligned_cols=223 Identities=10% Similarity=0.088 Sum_probs=140.9
Q ss_pred CeeEEeecCCCCeEEEEEcCCC----ceEeeec-------CCCCCeEEEEECCCCCEEEEeeCC------CcEEEeecCC
Q psy16316 76 QAAIHASTKIDDTVRYLSLHDN----KYIRYFP-------GHTKKVNSLCLSPIDDTFISGSYD------KTVRLWDLRS 138 (335)
Q Consensus 76 ~~~~~~~~~~d~~i~~~~~~~~----~~~~~~~-------~H~~~V~~~~~~~~~~~l~s~s~D------~~i~vWd~~~ 138 (335)
...+++.+..++.|.++|+.+. +.+++++ .....-..+...|+| .++++..+ +.|.+.|..+
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence 3456667777899999999755 6666663 111234567788999 88887776 7899999999
Q ss_pred CCceeEEEecCCc----ceEEECCCCCEEEEEE-------------------cCCeEEEEEccCCCCCceeeEEeccCCC
Q psy16316 139 PNCQGIMHVSGSR----PIAAFDPEGLIFGVGV-------------------NSDTIKLYDVRSFDKGPFSNFKFAAEKE 195 (335)
Q Consensus 139 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-------------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 195 (335)
.+....+...... .-..++|+++.+++.. .+++|.+||+.+. .....+.... ..
T Consensus 174 ~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~--k~~~tI~vg~-~g 250 (462)
T 2ece_A 174 FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR--KRIHSLTLGE-EN 250 (462)
T ss_dssp CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT--EEEEEEESCT-TE
T ss_pred CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC--cEeeEEecCC-CC
Confidence 8877665433211 1256799999887773 3689999999752 2222222211 11
Q ss_pred ccceEEEE--ccCCCEEEEEeC------CCeEEEEECCCCee--eeee--cc-------------cccCCCCceEEEEcC
Q psy16316 196 CDWTGIKF--SADGKYILISTN------GSIIRTFDAYNGQC--LQTL--AG-------------FLNNKGCPLEASFTP 250 (335)
Q Consensus 196 ~~~~~~~~--s~~~~~l~~~~~------~~~i~i~d~~~~~~--~~~~--~~-------------~~~~~~~v~~~~~sp 250 (335)
.....+.| +|+++++.+++. ++.|.+|....++. .+.+ .. +......+..+.+||
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~ 330 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL 330 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence 12234555 999999888775 45676655443321 1111 00 000013467899999
Q ss_pred CCcEEEEEeC-CCcEEEEECCC---CeeEEEeCCC-------CC--C----CeEEEEeCCCCcEEEeee
Q psy16316 251 DSKYVISGST-DGRIHIWNAEK---GFKVCVLDAD-------HP--S----PVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 251 ~~~~l~tgs~-dg~v~iwd~~~---~~~~~~~~~~-------h~--~----~v~~v~~sp~~~~~~s~~ 302 (335)
||++|.++.. .+.|.+||+.+ ......+..+ |+ . .=..++++|+|+++..+.
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9998776665 68899999863 3445555443 10 0 125789999999877765
No 232
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.01 E-value=4.6e-07 Score=80.46 Aligned_cols=230 Identities=13% Similarity=0.053 Sum_probs=137.8
Q ss_pred CCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCe-
Q psy16316 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKV- 110 (335)
Q Consensus 32 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V- 110 (335)
++..+..++.|+.|..+|.++++.................. .. .+ ..+..++.+..+|..+++.+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~-~v-~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~ 177 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DG-LV-LIHTSNGQLQALNEADGAVKWTVNLDMPSLS 177 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TT-EE-EEECTTSEEEEEETTTCCEEEEEECCC----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CC-EE-EEEcCCCeEEEEECCCCcEEEEEeCCCCcee
Confidence 45567778889999999999998776544322111111111 12 22 233458899999999998776655322111
Q ss_pred ----EEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcce--------EEECC--CCCEEEEEEcCCeEEEEE
Q psy16316 111 ----NSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPI--------AAFDP--EGLIFGVGVNSDTIKLYD 176 (335)
Q Consensus 111 ----~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~d~~v~iwd 176 (335)
...... +..++.++.++.+..+|..+++............. ....| .+..+.+++.++.+..+|
T Consensus 178 ~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 178 LRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD 255 (376)
T ss_dssp -CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred ecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence 111221 45788888899999999998887654432211000 00011 234556667788999999
Q ss_pred ccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEE
Q psy16316 177 VRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI 256 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 256 (335)
..+.+. .-. ... .....+ ..++..+++++.++.+..+|..+++.......... ........ .+..|+
T Consensus 256 ~~tG~~--~w~--~~~---~~~~~~--~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~--~~~~l~ 322 (376)
T 3q7m_A 256 LRSGQI--MWK--REL---GSVNDF--IVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH--RLLTSPVL--YNGNLV 322 (376)
T ss_dssp TTTCCE--EEE--ECC---CCEEEE--EEETTEEEEEETTCCEEEEETTTCCEEEEECTTTT--SCCCCCEE--ETTEEE
T ss_pred CCCCcE--Eee--ccC---CCCCCc--eEECCEEEEEcCCCeEEEEECCCCcEEEeecccCC--CcccCCEE--ECCEEE
Confidence 876421 111 111 112222 23467788888899999999999987655432111 11111222 256888
Q ss_pred EEeCCCcEEEEECCCCeeEEEeCC
Q psy16316 257 SGSTDGRIHIWNAEKGFKVCVLDA 280 (335)
Q Consensus 257 tgs~dg~v~iwd~~~~~~~~~~~~ 280 (335)
.++.+|.|+++|..++........
T Consensus 323 v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 323 VGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp EECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEeCCCeEEEEECCCCcEEEEEec
Confidence 899999999999999987765543
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.01 E-value=5.2e-08 Score=93.53 Aligned_cols=267 Identities=15% Similarity=0.089 Sum_probs=159.2
Q ss_pred CCEEEEecCCCeEEEEEccCCcceeeeeccccc-----------ceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe
Q psy16316 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG-----------VDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 101 (335)
+..|..++.++.|.-+|.++|+.+......... ...+.. .... +..+..|+.+..+|..+++.+-
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~--v~v~~~dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGK--VYVGAWDGRLIALDAATGKEVW 152 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTE--EEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCE--EEEEcCCCEEEEEECCCCCEEe
Confidence 456667777899999999999887765432110 011111 1222 2333468999999999999887
Q ss_pred eecCC-C----CCeEEEEECCCCCEEEEeeC------CCcEEEeecCCCCceeEEEecCCc-------------------
Q psy16316 102 YFPGH-T----KKVNSLCLSPIDDTFISGSY------DKTVRLWDLRSPNCQGIMHVSGSR------------------- 151 (335)
Q Consensus 102 ~~~~H-~----~~V~~~~~~~~~~~l~s~s~------D~~i~vWd~~~~~~~~~~~~~~~~------------------- 151 (335)
.+..+ . ..+.+--.. .+..++.++. |+.|+.+|..+++....+......
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred eecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 66644 1 122211111 1344555443 799999999999876555331110
Q ss_pred --------------ceEEECCCCCEEEEEEcCC-------------------eEEEEEccCCCCCceeeEEeccC-----
Q psy16316 152 --------------PIAAFDPEGLIFGVGVNSD-------------------TIKLYDVRSFDKGPFSNFKFAAE----- 193 (335)
Q Consensus 152 --------------~~~~~~~~~~~~~~~~~d~-------------------~v~iwd~~~~~~~~~~~~~~~~~----- 193 (335)
...+++|++.++..+..++ .|..+|.++.+. .-.++....
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~--~W~~~~~~~d~wd~ 309 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY--KWHYQETPGDNWDY 309 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE--EEEEESSTTCCSCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCE--EEEEecCCCccccc
Confidence 2356778887777776553 488888876431 112221111
Q ss_pred -CCccceEEEEccCC---CEEEEEeCCCeEEEEECCCCeeeeeecccccC-------CC-----------------Cc--
Q psy16316 194 -KECDWTGIKFSADG---KYILISTNGSIIRTFDAYNGQCLQTLAGFLNN-------KG-----------------CP-- 243 (335)
Q Consensus 194 -~~~~~~~~~~s~~~---~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-------~~-----------------~v-- 243 (335)
......-+....+| ..++.++.++.++++|..+|+.+..+...... .. ++
T Consensus 310 ~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~ 389 (677)
T 1kb0_A 310 TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGP 389 (677)
T ss_dssp CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCT
T ss_pred ccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCc
Confidence 01111123334467 67888899999999999999886554311000 00 00
Q ss_pred ------eEEEEcCCCcEEEEEeC-------------------------------------------CCcEEEEECCCCee
Q psy16316 244 ------LEASFTPDSKYVISGST-------------------------------------------DGRIHIWNAEKGFK 274 (335)
Q Consensus 244 ------~~~~~sp~~~~l~tgs~-------------------------------------------dg~v~iwd~~~~~~ 274 (335)
..++|+|+..++.++.. .|.|..||..+++.
T Consensus 390 ~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~ 469 (677)
T 1kb0_A 390 YGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA 469 (677)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE
T ss_pred ccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE
Confidence 14689999888777543 27899999999987
Q ss_pred EEEeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEe
Q psy16316 275 VCVLDADHPSPVQTIQFNPKFNMMASAC--TNLAFW 308 (335)
Q Consensus 275 ~~~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w 308 (335)
....+ +..+++...+.+.+.++..++ +.++.|
T Consensus 470 ~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~ 503 (677)
T 1kb0_A 470 AWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAY 503 (677)
T ss_dssp EEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred EeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEE
Confidence 77664 334455556666776666665 344444
No 234
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.01 E-value=1.2e-06 Score=76.00 Aligned_cols=239 Identities=11% Similarity=0.030 Sum_probs=144.3
Q ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeec--------------------ccccceEEEEecCCCeeEEe
Q psy16316 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS--------------------KKYGVDLIRFTHAKQAAIHA 81 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~ 81 (335)
....++.|+++|.++.++..++.|..||.+++... .+.. ....+..+++.+.....+++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 34567889999997888888999999998765432 1110 01234556666533334444
Q ss_pred ecCCCCeEEEEEcCCCceEeee----cCC-CCCeEEEEECC-CCCEEEEeeC-----------------CCcEEEeecCC
Q psy16316 82 STKIDDTVRYLSLHDNKYIRYF----PGH-TKKVNSLCLSP-IDDTFISGSY-----------------DKTVRLWDLRS 138 (335)
Q Consensus 82 ~~~~d~~i~~~~~~~~~~~~~~----~~H-~~~V~~~~~~~-~~~~l~s~s~-----------------D~~i~vWd~~~ 138 (335)
.. .+.+..+|..++.. +.+ .+. ....+.+++.+ +|+..++-.. ++.|..+|..+
T Consensus 98 d~--~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 98 DC--YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp ET--TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EC--CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 32 24477777765432 222 111 23478899999 8987776532 36788888776
Q ss_pred CCceeEEEecCCcceEEECCCCCE-EEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC--
Q psy16316 139 PNCQGIMHVSGSRPIAAFDPEGLI-FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-- 215 (335)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-- 215 (335)
++............-++++++++. +++-+..+.|..|++..........+.. ... ...++++++|++.++...
T Consensus 175 ~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~G~l~va~~~~~ 250 (322)
T 2fp8_A 175 KETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNADGHFWVSSSEEL 250 (322)
T ss_dssp TEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTTSCEEEEEEEET
T ss_pred CEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCCCCEEEEecCcc
Confidence 654332222222345789999884 4554566899999987432222222221 112 467999999987666544
Q ss_pred --------CCeEEEEECCCCeeeeeecccccC-CCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 216 --------GSIIRTFDAYNGQCLQTLAGFLNN-KGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 216 --------~~~i~i~d~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
.+.|..+|.. ++.+..+....+. ...+..+++ .+++++++...++.|.++++.
T Consensus 251 ~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 251 DGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred cccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 3568888874 6666555432211 234555666 467777777778889999875
No 235
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.98 E-value=3.4e-07 Score=76.87 Aligned_cols=213 Identities=10% Similarity=0.046 Sum_probs=127.0
Q ss_pred cccceeeeccCCc--cEEEEEECCCCCEEEEecC--CCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCC
Q psy16316 10 SYKVAKLFRENTD--KITSIDYSADGLLLISCSE--DDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI 85 (335)
Q Consensus 10 ~~~~~~~~~~h~~--~V~~v~~s~~g~~lasgs~--Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (335)
.+++.+++ .|.. ....+.|+++|.+.++.+. ++.|++.|+++++....+....
T Consensus 8 ~~~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~---------------------- 64 (266)
T 2iwa_A 8 IVEVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD---------------------- 64 (266)
T ss_dssp EEEEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT----------------------
T ss_pred CceEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC----------------------
Confidence 45666777 4543 4689999999876666554 6799999998887665532110
Q ss_pred CCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEE
Q psy16316 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (335)
+ .....+++.. +...++.-.++.+.++|..+.+....+...... -..+.+++..+.+
T Consensus 65 --------------------~-~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~-g~glt~Dg~~l~v 121 (266)
T 2iwa_A 65 --------------------S-YFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD-GWGLATDGKILYG 121 (266)
T ss_dssp --------------------T-CCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEEEECCSSS-CCEEEECSSSEEE
T ss_pred --------------------C-cceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEEEECCCCC-eEEEEECCCEEEE
Confidence 0 0011233322 223334445778888888777666555443011 1234455554444
Q ss_pred EEcCCeEEEEEccCCCCCceeeEEecc--CCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc-c-----
Q psy16316 166 GVNSDTIKLYDVRSFDKGPFSNFKFAA--EKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF-L----- 237 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~----- 237 (335)
+..++++.++|..+... ........ ......+.+.+. ++...+....++.|.+.|+.+++.+.++... .
T Consensus 122 s~gs~~l~viD~~t~~v--~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~ 198 (266)
T 2iwa_A 122 SDGTSILYEIDPHTFKL--IKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLI 198 (266)
T ss_dssp ECSSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHH
T ss_pred ECCCCeEEEEECCCCcE--EEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence 44577888888766331 11111111 111124567777 6654444445789999999999988877531 0
Q ss_pred ----cCCCCceEEEEcCCCc-EEEEEeCCCcEEEEECCC
Q psy16316 238 ----NNKGCPLEASFTPDSK-YVISGSTDGRIHIWNAEK 271 (335)
Q Consensus 238 ----~~~~~v~~~~~sp~~~-~l~tgs~dg~v~iwd~~~ 271 (335)
.....+..++|+|+++ +++|+....+|..-++.+
T Consensus 199 ~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 199 DEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp HTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred cccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 0112457899999875 677777888888888643
No 236
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.96 E-value=1.9e-07 Score=89.80 Aligned_cols=264 Identities=13% Similarity=0.099 Sum_probs=154.6
Q ss_pred CCEEEEecCCCeEEEEEccCCcceeeeeccccc----------c-eEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe
Q psy16316 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG----------V-DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 101 (335)
+..++.++.++.|.-+|.++|+.+......... + ..+.. ... .+..+..|+.+..+|..+++.+-
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g--~v~v~~~dg~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKG--KVYVGVLDGRLEAIDAKTGQRAW 145 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECC--EEEEEccCCEEEEEECCCCCEee
Confidence 556777788999999999999987765432110 0 00111 122 23334468999999999998876
Q ss_pred eecC--CCCCeEEEEECC---CCCEEEEee-----CCCcEEEeecCCCCceeEEEecC----------------------
Q psy16316 102 YFPG--HTKKVNSLCLSP---IDDTFISGS-----YDKTVRLWDLRSPNCQGIMHVSG---------------------- 149 (335)
Q Consensus 102 ~~~~--H~~~V~~~~~~~---~~~~l~s~s-----~D~~i~vWd~~~~~~~~~~~~~~---------------------- 149 (335)
.+.. +......+...| ++..++..+ .|+.|+.||.++++....+....
T Consensus 146 ~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 146 SVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp EEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred eecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 5543 211111111122 343444332 37999999999998765543210
Q ss_pred ----------CcceEEECCCCCEEEEEEcCC-------------------eEEEEEccCCCCCceeeEEeccC------C
Q psy16316 150 ----------SRPIAAFDPEGLIFGVGVNSD-------------------TIKLYDVRSFDKGPFSNFKFAAE------K 194 (335)
Q Consensus 150 ----------~~~~~~~~~~~~~~~~~~~d~-------------------~v~iwd~~~~~~~~~~~~~~~~~------~ 194 (335)
......++|+..++..++.++ .|..+|..+.+. .-.++.... .
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~--~W~~~~~~~d~wd~~~ 303 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY--VWHYQTTPGDAWDYTA 303 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE--EEEEESSTTCCSCCCC
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce--eEeeecCCcccccccC
Confidence 012356788888888887665 388999886432 111221100 0
Q ss_pred CccceEEEEccCCC---EEEEEeCCCeEEEEECCCCeeeeeecccc-------------------------cCCC-----
Q psy16316 195 ECDWTGIKFSADGK---YILISTNGSIIRTFDAYNGQCLQTLAGFL-------------------------NNKG----- 241 (335)
Q Consensus 195 ~~~~~~~~~s~~~~---~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-------------------------~~~~----- 241 (335)
.....-.....+|+ .++.++.++.++++|..+|+.+....-.. ....
T Consensus 304 ~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p 383 (689)
T 1yiq_A 304 TQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTP 383 (689)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESS
T ss_pred CCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCC
Confidence 01111112223554 68888899999999999998763321000 0000
Q ss_pred ------CceEEEEcCCCcEEEEEeC---------------------------------------------CCcEEEEECC
Q psy16316 242 ------CPLEASFTPDSKYVISGST---------------------------------------------DGRIHIWNAE 270 (335)
Q Consensus 242 ------~v~~~~~sp~~~~l~tgs~---------------------------------------------dg~v~iwd~~ 270 (335)
.-..++|+|+..++.+++. +|.|+.||+.
T Consensus 384 ~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~ 463 (689)
T 1yiq_A 384 AFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV 463 (689)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT
T ss_pred CcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC
Confidence 0012689998887776532 3779999999
Q ss_pred CCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeece
Q psy16316 271 KGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304 (335)
Q Consensus 271 ~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~ 304 (335)
+++.....+. ..++..-.+...+.+++.++.+
T Consensus 464 tG~~~W~~~~--~~~~~~g~~~tagglvf~gt~d 495 (689)
T 1yiq_A 464 KQQAAWEVPY--VTIFNGGTLSTAGNLVFEGSAD 495 (689)
T ss_dssp TTEEEEEEEE--SSSCCCCEEEETTTEEEEECTT
T ss_pred CCCeEeEccC--CCCccCccceECCCEEEEECCC
Confidence 9987776643 2334444666677777777543
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.96 E-value=5e-07 Score=75.85 Aligned_cols=206 Identities=16% Similarity=0.108 Sum_probs=136.2
Q ss_pred eEeeecCCCC--CeEEEEECCCCCEEEEeeC--CCcEEEeecCCCCceeEEEecCCcc--eEEECCCCCEEEEEEcCCeE
Q psy16316 99 YIRYFPGHTK--KVNSLCLSPIDDTFISGSY--DKTVRLWDLRSPNCQGIMHVSGSRP--IAAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 99 ~~~~~~~H~~--~V~~~~~~~~~~~l~s~s~--D~~i~vWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~v 172 (335)
.+.+++ |.. ....+.|++++.+.++.+. +++|++.|+.+++....+......- .+++. ++.++++...++.+
T Consensus 11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v 88 (266)
T 2iwa_A 11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIG 88 (266)
T ss_dssp EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEE
T ss_pred EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEE
Confidence 445554 443 3579999998766666553 6899999999998877665433222 22333 23566666778999
Q ss_pred EEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc--cCCCCceEEEEcC
Q psy16316 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL--NNKGCPLEASFTP 250 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~sp 250 (335)
.++|..+.+ ....+... .. .+..+++|+..++++..++.|.++|..+.+..+.+..-. .....+..+.|.
T Consensus 89 ~viD~~t~~--v~~~i~~g-~~----~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 89 FIYDRRTLS--NIKNFTHQ-MK----DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp EEEETTTTE--EEEEEECC-SS----SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred EEEECCCCc--EEEEEECC-CC----CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 999987642 22233222 11 134577788888888778899999999998877775321 122235577887
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeEEEeCCC----------C--CCCeEEEEeCCCCcE-EEeeeceeEEecccccc
Q psy16316 251 DSKYVISGSTDGRIHIWNAEKGFKVCVLDAD----------H--PSPVQTIQFNPKFNM-MASACTNLAFWIPTYLS 314 (335)
Q Consensus 251 ~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~----------h--~~~v~~v~~sp~~~~-~~s~~~~~~~w~~~~~~ 314 (335)
++..++..-.++.|.+-|..++.....++.. + ....+.++|+|+++. ++++...-++++.++..
T Consensus 161 dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 161 NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 7777777767889999999999877776532 1 134589999999865 45554444555554433
No 238
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.95 E-value=1.5e-07 Score=83.21 Aligned_cols=213 Identities=9% Similarity=-0.134 Sum_probs=130.1
Q ss_pred eEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEee----------CCCcEEEeecCCCCceeEEEec--------C
Q psy16316 88 TVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGS----------YDKTVRLWDLRSPNCQGIMHVS--------G 149 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s----------~D~~i~vWd~~~~~~~~~~~~~--------~ 149 (335)
++.++|..+++.+..+.....+ .+.++|+++.+..+. .++.|.+||+.+.+....+... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999988755556 799999998887775 4789999999999888776554 1
Q ss_pred CcceEEECCCCCEEEEEEc--CCeEEE--EEccCCCCCceeeEEeccC----CCccceEEEE------------------
Q psy16316 150 SRPIAAFDPEGLIFGVGVN--SDTIKL--YDVRSFDKGPFSNFKFAAE----KECDWTGIKF------------------ 203 (335)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~--d~~v~i--wd~~~~~~~~~~~~~~~~~----~~~~~~~~~~------------------ 203 (335)
.-..+.++|+|+++.++.. ++.+.+ +|+.+ ...+..... ....-.-+++
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-----v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-----DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-----EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-----ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 2346789999988887763 467888 88754 011100000 0000000111
Q ss_pred -------------------ccCCCEEEEEeCCCeEEEEECCCCe--eeeeeccc-------ccCCCCceEEEEcCCCcEE
Q psy16316 204 -------------------SADGKYILISTNGSIIRTFDAYNGQ--CLQTLAGF-------LNNKGCPLEASFTPDSKYV 255 (335)
Q Consensus 204 -------------------s~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~-------~~~~~~v~~~~~sp~~~~l 255 (335)
++++..++..+. +.+.+.|..+.. ....+.-. .........++|+||++.+
T Consensus 200 ~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~l 278 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI 278 (368)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEE
T ss_pred CeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEE
Confidence 333333343334 667777765432 11211100 0000011126899999877
Q ss_pred EEEeC---------CCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc-EEEeee---ceeEEecc
Q psy16316 256 ISGST---------DGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN-MMASAC---TNLAFWIP 310 (335)
Q Consensus 256 ~tgs~---------dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~~~s~~---~~~~~w~~ 310 (335)
..+.. +..+.++|..+.+.+..++.+ .....++|+|+++ ++++.. +++.++.+
T Consensus 279 yV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 279 MILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp EEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred EEEeccccCcccccCCCEEEEECCCCeEEEEEECC--CCcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence 65432 235679999998877766543 2567999999997 344443 45666654
No 239
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.94 E-value=1.4e-06 Score=77.34 Aligned_cols=230 Identities=8% Similarity=-0.003 Sum_probs=136.9
Q ss_pred CCCEEEEecCCCeEEEEEccCCcceeeeeccc---------ccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEee
Q psy16316 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSKK---------YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRY 102 (335)
Q Consensus 32 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~ 102 (335)
++..+..++.++.|..+|.++++......... ..+.. .........++ +..++.+..+|..+++.+-.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v--~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYI--GSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEE--EETTSEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEE--EcCCCEEEEEECCCCCEEEE
Confidence 35677788889999999999998776544321 11111 11112222222 33578999999999987765
Q ss_pred ecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCc------ceEEECCCCCEEEEEEcCCeEEEEE
Q psy16316 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSR------PIAAFDPEGLIFGVGVNSDTIKLYD 176 (335)
Q Consensus 103 ~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~d~~v~iwd 176 (335)
++............ +..++.++.++.|..+|..+++........... ..... .+..+.++..++.+..+|
T Consensus 129 ~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 129 TKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp EECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEE
T ss_pred EeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEE
Confidence 54432222122222 457888889999999999998876554332211 11111 134566677888999999
Q ss_pred ccCCCCCceeeEEeccC-CCc------cc-eEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEE
Q psy16316 177 VRSFDKGPFSNFKFAAE-KEC------DW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF 248 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~~~-~~~------~~-~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 248 (335)
..+.+. .-....... ... .+ ..... .+..+++++.++.+..+|..+++....... .....+..
T Consensus 205 ~~tG~~--~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-----~~~~~~~~ 275 (376)
T 3q7m_A 205 MEQGQM--IWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKREL-----GSVNDFIV 275 (376)
T ss_dssp TTTCCE--EEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECC-----CCEEEEEE
T ss_pred CCCCcE--EEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccC-----CCCCCceE
Confidence 875321 111111100 000 00 00111 245677778888999999999987654421 11222333
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCeeEEEeC
Q psy16316 249 TPDSKYVISGSTDGRIHIWNAEKGFKVCVLD 279 (335)
Q Consensus 249 sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~ 279 (335)
++..+..++.++.|..+|..++.......
T Consensus 276 --~~~~l~~~~~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 276 --DGNRIYLVDQNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp --ETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred --ECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence 46678888889999999999998776654
No 240
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.90 E-value=5.2e-07 Score=75.04 Aligned_cols=194 Identities=12% Similarity=0.177 Sum_probs=129.1
Q ss_pred eEeeecCCCC--CeEEEEECCCCCEEEEeeCCC--cEEEeecCCCCceeEEEecCCcceEEECCC-CCEEEEEEcCCeEE
Q psy16316 99 YIRYFPGHTK--KVNSLCLSPIDDTFISGSYDK--TVRLWDLRSPNCQGIMHVSGSRPIAAFDPE-GLIFGVGVNSDTIK 173 (335)
Q Consensus 99 ~~~~~~~H~~--~V~~~~~~~~~~~l~s~s~D~--~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~v~ 173 (335)
.++.++ |.. ....+.|+ ++.+..|.+.+| .|+..|+.+++...........-...+.+. +.++.....++.+.
T Consensus 33 vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGF 110 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEE
Confidence 455564 443 34788888 577778888776 999999999988776655433211112222 35556666789999
Q ss_pred EEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc--cCCCCceEEEEcCC
Q psy16316 174 LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL--NNKGCPLEASFTPD 251 (335)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~sp~ 251 (335)
+||..+.+ ....+.... .+..+.+++..|+++..+..|.++|..+.+..+++.... .....+..+.|. +
T Consensus 111 v~D~~t~~--~~~ti~~~~------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~ 181 (262)
T 3nol_A 111 VWNIRNLR--QVRSFNYDG------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-D 181 (262)
T ss_dssp EEETTTCC--EEEEEECSS------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEECccCc--EEEEEECCC------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-C
Confidence 99998743 233333221 224455788888888777889999999998887775422 112233456665 7
Q ss_pred CcEEEEEeCCCcEEEEECCCCeeEEEeCCC---------C--CCCeEEEEeCCCCcEEEeeec
Q psy16316 252 SKYVISGSTDGRIHIWNAEKGFKVCVLDAD---------H--PSPVQTIQFNPKFNMMASACT 303 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~---------h--~~~v~~v~~sp~~~~~~s~~~ 303 (335)
|+.+|..-.+..|.+.|..++.....++.. + ..--+.+||+|+++.|..+++
T Consensus 182 G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 182 GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 777776667889999999999887776532 1 124588999998766555543
No 241
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.89 E-value=5.9e-07 Score=74.70 Aligned_cols=195 Identities=15% Similarity=0.124 Sum_probs=127.9
Q ss_pred cccceeeeccCCcc--EEEEEECCCCCEEEEecCCC--eEEEEEccCCcceeeeecccccc-eEEEEecCCCeeEEeecC
Q psy16316 10 SYKVAKLFRENTDK--ITSIDYSADGLLLISCSEDD--QIVIYDCELGTNKRTVFSKKYGV-DLIRFTHAKQAAIHASTK 84 (335)
Q Consensus 10 ~~~~~~~~~~h~~~--V~~v~~s~~g~~lasgs~Dg--~i~lwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 84 (335)
.|++.+.| .|... ...+.|+ ++.++.|.+.+| .|+++|+++++..+.+....... ..++. .++. +....-
T Consensus 30 ~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~-ly~ltw 104 (262)
T 3nol_A 30 DYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDK-IVGLTW 104 (262)
T ss_dssp EEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTE-EEEEES
T ss_pred ceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCE-EEEEEe
Confidence 47777888 55444 5889999 788888888876 99999999999887764432111 11222 2333 344455
Q ss_pred CCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC-Ccc-----eEEECC
Q psy16316 85 IDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG-SRP-----IAAFDP 158 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-~~~-----~~~~~~ 158 (335)
.++.+.++|..+.+.+..++--... ..++ +++..|+.+..++.|.++|..+.+....+.... ..+ -+.+.
T Consensus 105 ~~~~v~v~D~~t~~~~~ti~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~- 180 (262)
T 3nol_A 105 KNGLGFVWNIRNLRQVRSFNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV- 180 (262)
T ss_dssp SSSEEEEEETTTCCEEEEEECSSCC-CCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-
T ss_pred eCCEEEEEECccCcEEEEEECCCCc-eEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-
Confidence 6899999999999999888642222 2333 456666665568889999999888766554421 111 13333
Q ss_pred CCCEEEEEEcCCeEEEEEccCCCCCceeeEEec--c-------CCCccceEEEEccCCCEEEEEeC
Q psy16316 159 EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA--A-------EKECDWTGIKFSADGKYILISTN 215 (335)
Q Consensus 159 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~s~~~~~l~~~~~ 215 (335)
+|.+++....++.|.+.|..+.. ....+... . ......++++++|+++.|++++.
T Consensus 181 ~G~lyan~w~~~~I~vIDp~tG~--V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 181 DGEIFANVWQTNKIVRIDPETGK--VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TTEEEEEETTSSEEEEECTTTCB--EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCEEEEEEccCCeEEEEECCCCc--EEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 67788877788899999987643 22222221 0 11224589999999888877653
No 242
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.87 E-value=5.5e-07 Score=86.23 Aligned_cols=285 Identities=10% Similarity=0.054 Sum_probs=152.5
Q ss_pred EEEECC-CCCEEEEecCCC-----------eEEEEEccCCcceee--eec-ccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 26 SIDYSA-DGLLLISCSEDD-----------QIVIYDCELGTNKRT--VFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 26 ~v~~s~-~g~~lasgs~Dg-----------~i~lwd~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
.+++.+ +|++++.||.+. .+.+||..+++.... ... ........++..++ ..++..+..+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC-CEEEeCCCCCCceE
Confidence 455666 899999887653 688999988764321 111 11112223443333 23333443566899
Q ss_pred EEEcCCCceEeeecCCCCC-eEEEEECCCCCEEEEee-CC-----CcEEEeecCCCCceeEE-----EecCCcceEEECC
Q psy16316 91 YLSLHDNKYIRYFPGHTKK-VNSLCLSPIDDTFISGS-YD-----KTVRLWDLRSPNCQGIM-----HVSGSRPIAAFDP 158 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~-V~~~~~~~~~~~l~s~s-~D-----~~i~vWd~~~~~~~~~~-----~~~~~~~~~~~~~ 158 (335)
+||..+++-...-..+... -.++...+++++++.|+ .+ ..+.+||..+......- ..........+..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 9999877544432222222 13456667889999988 45 57899999876533210 0000000012234
Q ss_pred CCCEEEEEEcC---------CeEEEEEccCCCCCceeeEEeccC------CCccceEEEEc-cCCCEEEEEeCCC-----
Q psy16316 159 EGLIFGVGVNS---------DTIKLYDVRSFDKGPFSNFKFAAE------KECDWTGIKFS-ADGKYILISTNGS----- 217 (335)
Q Consensus 159 ~~~~~~~~~~d---------~~v~iwd~~~~~~~~~~~~~~~~~------~~~~~~~~~~s-~~~~~l~~~~~~~----- 217 (335)
++.+++.|+.+ ..+..||..... .......... ....-.++.+. .+++.+++|+.+.
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~--w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~ 426 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG--DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 426 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTC--EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcc--eeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCC
Confidence 55555666544 356778876421 1111111100 00111234443 3666777765322
Q ss_pred ------eEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC-----------CcEEEEECCCCeeEEEeCC
Q psy16316 218 ------IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD-----------GRIHIWNAEKGFKVCVLDA 280 (335)
Q Consensus 218 ------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d-----------g~v~iwd~~~~~~~~~~~~ 280 (335)
.+.+||..+.+..............-..++..|++++++.|+.+ ..+.+||..+..=...-..
T Consensus 427 ~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~ 506 (656)
T 1k3i_A 427 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN 506 (656)
T ss_dssp CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred cCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCC
Confidence 67788887765543321111111222345677899999999865 4689999876532211111
Q ss_pred CCC-CCeEEEEeCCCCcEEEeeec----------eeEEeccccc
Q psy16316 281 DHP-SPVQTIQFNPKFNMMASACT----------NLAFWIPTYL 313 (335)
Q Consensus 281 ~h~-~~v~~v~~sp~~~~~~s~~~----------~~~~w~~~~~ 313 (335)
.++ ..-....+.|++.+++.|+. ++.+|.+...
T Consensus 507 ~~~R~~hs~a~ll~dg~v~v~GG~~~~~~~~~~~~~e~~~Ppyl 550 (656)
T 1k3i_A 507 SIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYL 550 (656)
T ss_dssp SSCCCTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECGGG
T ss_pred CCccccccHhhcCCCcEEEecCCCCCCCCCCCeeEEEEEeChhh
Confidence 111 12234456799999999874 3567777655
No 243
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.87 E-value=4.6e-07 Score=78.56 Aligned_cols=262 Identities=13% Similarity=0.060 Sum_probs=151.2
Q ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc
Q psy16316 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK 98 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 98 (335)
.+...+.++...++|.+.+ ++.+ +..+|. +++.................. .. .+.+ +..++.+..+|.. ++
T Consensus 57 ~~~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~-~l~v-~t~~~~l~~~d~~-g~ 127 (330)
T 3hxj_A 57 SGEIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--ED-ILYV-TSMDGHLYAINTD-GT 127 (330)
T ss_dssp GGGEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TT-EEEE-ECTTSEEEEECTT-SC
T ss_pred cCCCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CC-EEEE-EecCCEEEEEcCC-CC
Confidence 3445567787888886544 4444 888886 555433322222112222222 22 2222 3357888899988 76
Q ss_pred eEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECCCCCEEEEEEcCCeEEEEEc
Q psy16316 99 YIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPEGLIFGVGVNSDTIKLYDV 177 (335)
Q Consensus 99 ~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iwd~ 177 (335)
....+..+...+.++...+++. ++.++.++.|..+|.. ++........ ........++++.+++.. +.+..+|
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d- 201 (330)
T 3hxj_A 128 EKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN- 201 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-
T ss_pred EEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-
Confidence 6665655556667777777666 5567788999999988 6554444332 223345566777766544 7788888
Q ss_pred cCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEE
Q psy16316 178 RSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS 257 (335)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~t 257 (335)
.+. ....... .....+.++..++++.. .+++.++.+..+|. +++.+..+... ...+..+.+.+++ .|..
T Consensus 202 ~~g--~~~~~~~---~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~-~g~~~~~~~~~---~~~~~~~~~~~~g-~l~v 270 (330)
T 3hxj_A 202 PDG--TEKWNFY---AGYWTVTRPAISEDGTI-YVTSLDGHLYAINP-DGTEKWRFKTG---KRIESSPVIGNTD-TIYF 270 (330)
T ss_dssp TTS--CEEEEEC---CSSCCCSCCEECTTSCE-EEEETTTEEEEECT-TSCEEEEEECS---SCCCSCCEECTTS-CEEE
T ss_pred CCC--cEEEEEc---cCCcceeceEECCCCeE-EEEcCCCeEEEECC-CCCEeEEeeCC---CCccccceEcCCC-eEEE
Confidence 332 1111111 11233556788888765 45556677777774 45544444321 1222335566565 5666
Q ss_pred EeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee-ceeEEe
Q psy16316 258 GSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC-TNLAFW 308 (335)
Q Consensus 258 gs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~-~~~~~w 308 (335)
++.+|.|..+|. ++........ ....+.++...+++.+.+.+. +.+.+.
T Consensus 271 ~t~~ggl~~~d~-~g~~~~~~~~-~~~~~~~~~~d~~g~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 271 GSYDGHLYAINP-DGTEKWNFET-GSWIIATPVIDENGTIYFGTRNGKFYAL 320 (330)
T ss_dssp ECTTCEEEEECT-TSCEEEEEEC-SSCCCSCCEECTTCCEEEECTTSCEEEE
T ss_pred ecCCCCEEEECC-CCcEEEEEEc-CCccccceEEcCCCEEEEEcCCCeEEEE
Confidence 778888999996 6665554433 345667778878888766553 444444
No 244
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.86 E-value=2.1e-06 Score=82.37 Aligned_cols=262 Identities=14% Similarity=0.168 Sum_probs=158.5
Q ss_pred CCEEEEecCCCeEEEEEccCCcceeeeeccc----ccceE-EEEecCCCeeEEeecC----CCCeEEEEEcCCCceEeee
Q psy16316 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKK----YGVDL-IRFTHAKQAAIHASTK----IDDTVRYLSLHDNKYIRYF 103 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~----~d~~i~~~~~~~~~~~~~~ 103 (335)
+..++.++.|+.|..+|.++|+.+....... ..+.. ... .....++.... .++.+..+|..+++.+-.+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 5577888899999999999999877654321 11110 011 12222322222 2588999999999887655
Q ss_pred cC---CC----------------------------CCeEEEEECCCCCEEEEeeCCC-------------------cEEE
Q psy16316 104 PG---HT----------------------------KKVNSLCLSPIDDTFISGSYDK-------------------TVRL 133 (335)
Q Consensus 104 ~~---H~----------------------------~~V~~~~~~~~~~~l~s~s~D~-------------------~i~v 133 (335)
.. .. ....++++.|+..++..++.++ .|..
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A 274 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 31 10 1112467888878888887766 4999
Q ss_pred eecCCCCceeEEEecCC--------cce--EEECCCCC---EEEEEEcCCeEEEEEccCCCCCceeeEEecc--------
Q psy16316 134 WDLRSPNCQGIMHVSGS--------RPI--AAFDPEGL---IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA-------- 192 (335)
Q Consensus 134 Wd~~~~~~~~~~~~~~~--------~~~--~~~~~~~~---~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-------- 192 (335)
+|..+++....++.... .+. ..+..+|+ .++.+..++.+.++|..+.+. .....+..
T Consensus 275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~--l~~~~~~~~~w~~~~d 352 (668)
T 1kv9_A 275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL--ISAEKFGKVTWAEKVD 352 (668)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE--EEEEESSCCCSEEEEC
T ss_pred EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE--eccccccccccccccc
Confidence 99999987765543210 111 12223554 577888899999999776431 10000000
Q ss_pred -------------------------CCCccceEEEEccCCCEEEEEe---------------------------------
Q psy16316 193 -------------------------EKECDWTGIKFSADGKYILIST--------------------------------- 214 (335)
Q Consensus 193 -------------------------~~~~~~~~~~~s~~~~~l~~~~--------------------------------- 214 (335)
.....+..++++|+...+++..
T Consensus 353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p 432 (668)
T 1kv9_A 353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP 432 (668)
T ss_dssp TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence 0011234578899887766532
Q ss_pred ---CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEe
Q psy16316 215 ---NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQF 291 (335)
Q Consensus 215 ---~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~ 291 (335)
.++.|.-||+.+++.+-+..... ......+...+.+++.|+.|+.++.||..++..+..+..+....-.-+.+
T Consensus 433 ~~~~~g~l~A~D~~tG~~~W~~~~~~----~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~ 508 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQKAAWKVPYPT----HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTF 508 (668)
T ss_dssp GGGCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred CCCccceEEEEeCCCCcEEEEccCCC----CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEE
Confidence 12679999999998776554321 11223455567889999999999999999998887665432211122344
Q ss_pred CCCCc-EEEeee
Q psy16316 292 NPKFN-MMASAC 302 (335)
Q Consensus 292 sp~~~-~~~s~~ 302 (335)
..+|+ +++.++
T Consensus 509 ~~~G~~yva~~~ 520 (668)
T 1kv9_A 509 ELAGRQYVAIMA 520 (668)
T ss_dssp EETTEEEEEEEE
T ss_pred EECCEEEEEEEe
Confidence 45665 444444
No 245
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.84 E-value=1.1e-06 Score=73.03 Aligned_cols=191 Identities=14% Similarity=0.095 Sum_probs=129.7
Q ss_pred ceEeeecCCC--CCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcce--EEECCCCCEEEEEEcCCeEE
Q psy16316 98 KYIRYFPGHT--KKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPI--AAFDPEGLIFGVGVNSDTIK 173 (335)
Q Consensus 98 ~~~~~~~~H~--~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~v~ 173 (335)
+.++.++ |. .....+.|+. +.+..+.+.++.|+..|+.+++..... .....-. +++. .+.++.....++.+.
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~-g~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD-GERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC-SSCEEEEESSSCEEE
T ss_pred EEEEEEc-CCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe-CCEEEEEEccCCEEE
Confidence 3455563 43 3357888874 678888889999999999999887766 5443211 3343 345666677889999
Q ss_pred EEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccccc--CCCCceEEEEcCC
Q psy16316 174 LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN--NKGCPLEASFTPD 251 (335)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~sp~ 251 (335)
+||..+.+ ....+... . .+..+.+++..|+++..++.|.++|..+.+..+++..... ....+..+.|. +
T Consensus 120 V~D~~Tl~--~~~ti~~~--~----eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d 190 (268)
T 3nok_A 120 TWSGMPPQ--RERTTRYS--G----EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N 190 (268)
T ss_dssp EEETTTTE--EEEEEECS--S----CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEECCcCc--EEEEEeCC--C----ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence 99997643 22333322 1 1234557788898888888999999999988887753221 22234556666 7
Q ss_pred CcEEEEEeCCCcEEEEECCCCeeEEEeCCC------------CCCCeEEEEeCCCCc-EEEee
Q psy16316 252 SKYVISGSTDGRIHIWNAEKGFKVCVLDAD------------HPSPVQTIQFNPKFN-MMASA 301 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~------------h~~~v~~v~~sp~~~-~~~s~ 301 (335)
|+.+|..-.+..|.+-|..++..+..++.. -..-.+.+||+|++. ++++|
T Consensus 191 G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 777766667889999999999877766432 123568899999765 45555
No 246
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.81 E-value=6.7e-06 Score=77.28 Aligned_cols=260 Identities=10% Similarity=0.044 Sum_probs=153.9
Q ss_pred CCEEEEecCCCeEEEEEccCCcceeeeecccc----cce-EEEEecCCCeeEEeecC-----CCCeEEEEEcCCCceEee
Q psy16316 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKKY----GVD-LIRFTHAKQAAIHASTK-----IDDTVRYLSLHDNKYIRY 102 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~ 102 (335)
+..++.++.|+.+..+|.++|+.+........ .+. ..... .. .+++... .++.+..+|..+++.+-.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA--KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE--CC-EEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 55677888899999999999988765543221 111 00111 22 2333332 278999999999987755
Q ss_pred ecCCCCC-------------------------------------e-EEEEECCCCCEEEEeeC------------C----
Q psy16316 103 FPGHTKK-------------------------------------V-NSLCLSPIDDTFISGSY------------D---- 128 (335)
Q Consensus 103 ~~~H~~~-------------------------------------V-~~~~~~~~~~~l~s~s~------------D---- 128 (335)
+..-... + ..+++.+....+..++. |
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence 4321110 0 13456666555555542 2
Q ss_pred CcEEEeecCCCCceeEEEecC---------CcceE-EECCCCC---EEEEEEcCCeEEEEEccCCCCCceeeEEecc---
Q psy16316 129 KTVRLWDLRSPNCQGIMHVSG---------SRPIA-AFDPEGL---IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA--- 192 (335)
Q Consensus 129 ~~i~vWd~~~~~~~~~~~~~~---------~~~~~-~~~~~~~---~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~--- 192 (335)
+.|..+|..+++....+.... ..+++ ...++|+ +++.+..++.+..+|..+.+. ........
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~--~w~~~~~~~~~ 349 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL--IVAEKVDPAVN 349 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE--EEEEESSTTCC
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCE--EeeecccCCcc
Confidence 369999999988765554321 11222 2223563 566788888999999765421 11111100
Q ss_pred ---------------------------------CCCccceEEEEccCCCEEEEEe-------------------------
Q psy16316 193 ---------------------------------EKECDWTGIKFSADGKYILIST------------------------- 214 (335)
Q Consensus 193 ---------------------------------~~~~~~~~~~~s~~~~~l~~~~------------------------- 214 (335)
.....+..++++|+...+++.+
T Consensus 350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 429 (571)
T 2ad6_A 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL 429 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence 0011234578999888877754
Q ss_pred ------------CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCC
Q psy16316 215 ------------NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADH 282 (335)
Q Consensus 215 ------------~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h 282 (335)
.++.+..||+.+++..-++.... .+....+...+..+..++.|+.|+.||..+++++..+..+.
T Consensus 430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~----~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF----AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred eeccCccccCCCCCCeEEEEECCCCCEEEEecCCC----CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 24679999999998766554211 11122233345677779999999999999999887765443
Q ss_pred CCCeEEEEeCCCCcEEEee
Q psy16316 283 PSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 283 ~~~v~~v~~sp~~~~~~s~ 301 (335)
...-.-+.+.+++.+++..
T Consensus 506 ~~~~~p~~~~~~G~~yv~~ 524 (571)
T 2ad6_A 506 GGIGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp CCCSCCEEEEETTEEEEEE
T ss_pred CcEeeeEEEEECCEEEEEE
Confidence 3222234466777655543
No 247
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.79 E-value=1.5e-06 Score=72.36 Aligned_cols=194 Identities=10% Similarity=0.042 Sum_probs=125.8
Q ss_pred cccceeeeccCC--ccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCC
Q psy16316 10 SYKVAKLFRENT--DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDD 87 (335)
Q Consensus 10 ~~~~~~~~~~h~--~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 87 (335)
..++.+.| .|. .....+.|+ ++.+..+.+.+|.|+++|+++++..+.+ ... .....-....++.. ....-.++
T Consensus 42 ~~~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~L-y~ltw~~~ 116 (268)
T 3nok_A 42 VAHIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERL-YQLTWTEG 116 (268)
T ss_dssp EEEEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCE-EEEESSSC
T ss_pred ceEEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEE-EEEEccCC
Confidence 34566677 444 345789997 4678889999999999999999988876 222 22121122233433 34455689
Q ss_pred eEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC-Ccc-----eEEECCCCC
Q psy16316 88 TVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG-SRP-----IAAFDPEGL 161 (335)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-~~~-----~~~~~~~~~ 161 (335)
.+.++|..+.+.+.+++.-.. =+.++ +++..|+.+..+++|.++|..+.+....+.... ..+ -+.+. +|.
T Consensus 117 ~v~V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ 192 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV 192 (268)
T ss_dssp EEEEEETTTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECCcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE
Confidence 999999999999988874222 23444 456666666679999999999888766554321 111 12232 677
Q ss_pred EEEEEEcCCeEEEEEccCCCCCceeeEEec----------cCCCccceEEEEccCCCEEEEEe
Q psy16316 162 IFGVGVNSDTIKLYDVRSFDKGPFSNFKFA----------AEKECDWTGIKFSADGKYILIST 214 (335)
Q Consensus 162 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~s~~~~~l~~~~ 214 (335)
+++....++.|.+.|..+.. ....+... .......++++++|++..|++++
T Consensus 193 lyanvw~s~~I~vIDp~TG~--V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 193 IYANIWHSSDVLEIDPATGT--VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEETTCSEEEEECTTTCB--EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCc--EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 88777788899999987643 22222221 11123458999999877666654
No 248
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.78 E-value=1.4e-05 Score=67.22 Aligned_cols=222 Identities=8% Similarity=0.025 Sum_probs=131.5
Q ss_pred CccEEEEEECCCCC-EEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCce
Q psy16316 21 TDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY 99 (335)
Q Consensus 21 ~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 99 (335)
...+..+.|++++. ++++-..++.|..+|.+.+.....+.........+++.+.....+. +....+.|.+++++....
T Consensus 35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv-~d~~~~~I~~~~~~g~~~ 113 (267)
T 1npe_A 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFW-TDSQLDRIEVAKMDGTQR 113 (267)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEE-EETTTTEEEEEETTSCSC
T ss_pred CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEE-EECCCCEEEEEEcCCCCE
Confidence 34577999999655 5556667889999998765433222222235667777766544444 334567899999875433
Q ss_pred EeeecCCCCCeEEEEECCCCCE-EEEeeC--CCcEEEeecCCCCceeEEEec-CCcceEEECCCC-CEEEEEEcCCeEEE
Q psy16316 100 IRYFPGHTKKVNSLCLSPIDDT-FISGSY--DKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPEG-LIFGVGVNSDTIKL 174 (335)
Q Consensus 100 ~~~~~~H~~~V~~~~~~~~~~~-l~s~s~--D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~d~~v~i 174 (335)
.............++++|++.. .++-.. .+.|..+++............ .....+++++++ .++++....+.|..
T Consensus 114 ~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~ 193 (267)
T 1npe_A 114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC 193 (267)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEE
Confidence 2223322345789999996554 444433 468888887643322111111 112346788865 45566666789999
Q ss_pred EEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCc
Q psy16316 175 YDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK 253 (335)
Q Consensus 175 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 253 (335)
+|+.... ..... ... ....+++.. +..++.+. .++.|..+|..+++.++++... ....+..+++.|++.
T Consensus 194 ~~~~g~~---~~~~~--~~~-~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g--~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 194 LNPAQPG---RRKVL--EGL-QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPH--KQTRLYGITIALSQC 263 (267)
T ss_dssp EETTEEE---EEEEE--ECC-CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCS--SCCCCCCEEEECSCC
T ss_pred EecCCCc---eEEEe--cCC-CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccc--cccccceeeecCccC
Confidence 9986411 11111 111 122456554 55566555 4578999999999887776421 112356788888753
No 249
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.76 E-value=9.5e-07 Score=81.79 Aligned_cols=241 Identities=12% Similarity=0.093 Sum_probs=149.7
Q ss_pred CCCCEEEEec-CCCeEEEEEccCCcceeeeecc-cccceEEEE-e-cCCCeeEEee----------------cCCCCeEE
Q psy16316 31 ADGLLLISCS-EDDQIVIYDCELGTNKRTVFSK-KYGVDLIRF-T-HAKQAAIHAS----------------TKIDDTVR 90 (335)
Q Consensus 31 ~~g~~lasgs-~Dg~i~lwd~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~----------------~~~d~~i~ 90 (335)
+||++|.... .+..|.+-|+++.++.+.+... ......+++ . ++....+.+. ...++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 4888766554 5667999999999887744322 233555665 3 5555544432 13456889
Q ss_pred EEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCC--------------------------------------cEE
Q psy16316 91 YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDK--------------------------------------TVR 132 (335)
Q Consensus 91 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~--------------------------------------~i~ 132 (335)
++|.++.+....+.--. .-..++++|+|+++++.+.+. .|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999988877665211 345778999999998888664 466
Q ss_pred EeecCC--CCc-eeEEEecCCcceEEECCCCCEEEEEE-cCCeEEEEEccCCCC------CceeeEEeccCCCccceEEE
Q psy16316 133 LWDLRS--PNC-QGIMHVSGSRPIAAFDPEGLIFGVGV-NSDTIKLYDVRSFDK------GPFSNFKFAAEKECDWTGIK 202 (335)
Q Consensus 133 vWd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~ 202 (335)
+.|.++ ++. ...+........+.++|||+++.++. .+.+|.++|+.+... .+........+.-.....++
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a 337 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA 337 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence 777766 333 33444444455678999999766654 678999999985310 00000111111112235789
Q ss_pred EccCCCEEEE-EeCCCeEEEEECCC----------Ceeeeeeccccc--CCCCceEEEEcCCCcEEEEEeCCC--cE---
Q psy16316 203 FSADGKYILI-STNGSIIRTFDAYN----------GQCLQTLAGFLN--NKGCPLEASFTPDSKYVISGSTDG--RI--- 264 (335)
Q Consensus 203 ~s~~~~~l~~-~~~~~~i~i~d~~~----------~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~tgs~dg--~v--- 264 (335)
|+|+| .+.+ .--++.|..||+.+ .+.+.++..+.. |........++|||++|++...-. ++
T Consensus 338 F~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~ 416 (595)
T 1fwx_A 338 FDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNV 416 (595)
T ss_dssp ECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCC
T ss_pred ECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccC
Confidence 99999 5554 45678899999876 444555543321 111112346789999998876522 23
Q ss_pred --------EEEECCCCe
Q psy16316 265 --------HIWNAEKGF 273 (335)
Q Consensus 265 --------~iwd~~~~~ 273 (335)
.++|++.+.
T Consensus 417 gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 417 GPLKPENDQLIDISGDK 433 (595)
T ss_dssp CSSCCEEEEEEECSSSS
T ss_pred CCCCCCcceEEEcCCCc
Confidence 788885443
No 250
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.74 E-value=7e-06 Score=67.64 Aligned_cols=193 Identities=15% Similarity=0.172 Sum_probs=127.9
Q ss_pred eEeeecCCC--CCeEEEEECCCCCEEEEeeCC--CcEEEeecCCCCceeEEEecCCcce--EEECCCCCEEEEEEcCCeE
Q psy16316 99 YIRYFPGHT--KKVNSLCLSPIDDTFISGSYD--KTVRLWDLRSPNCQGIMHVSGSRPI--AAFDPEGLIFGVGVNSDTI 172 (335)
Q Consensus 99 ~~~~~~~H~--~~V~~~~~~~~~~~l~s~s~D--~~i~vWd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~v 172 (335)
.++.++ |. .....+.|++ +.+..|.+.+ ..|+..|+.+++...........-. +++. .+.++.....++.+
T Consensus 11 v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 11 VVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEE
T ss_pred EEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEE
Confidence 345553 54 4466888987 6677777775 4999999999988776655443211 2222 34566667788999
Q ss_pred EEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccccc--CCCCceEEEEcC
Q psy16316 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN--NKGCPLEASFTP 250 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~sp 250 (335)
.+||..+++ ....+.... .+..+.+++..|+++..++.|.++|..+.+..+++..... ....+..+.+.
T Consensus 88 ~v~D~~tl~--~~~ti~~~~------~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~- 158 (243)
T 3mbr_X 88 FVYDLATLT--PRARFRYPG------EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV- 158 (243)
T ss_dssp EEEETTTTE--EEEEEECSS------CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred EEEECCcCc--EEEEEeCCC------CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-
Confidence 999997643 223333221 2244557788888888888999999999988877753221 12234455554
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeEEEeCCC------------CCCCeEEEEeCCCCcEEEeeec
Q psy16316 251 DSKYVISGSTDGRIHIWNAEKGFKVCVLDAD------------HPSPVQTIQFNPKFNMMASACT 303 (335)
Q Consensus 251 ~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~------------h~~~v~~v~~sp~~~~~~s~~~ 303 (335)
+|+.+|..-.+..|.+.|..++..+..++.. -..-.+.+|++|++..|...++
T Consensus 159 ~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 159 NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 6777766666789999999999887776522 1134688999998665544443
No 251
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.73 E-value=7.9e-06 Score=67.30 Aligned_cols=194 Identities=16% Similarity=0.092 Sum_probs=125.3
Q ss_pred cccceeeeccCC--ccEEEEEECCCCCEEEEecCCC--eEEEEEccCCcceeeeecccccc-eEEEEecCCCeeEEeecC
Q psy16316 10 SYKVAKLFRENT--DKITSIDYSADGLLLISCSEDD--QIVIYDCELGTNKRTVFSKKYGV-DLIRFTHAKQAAIHASTK 84 (335)
Q Consensus 10 ~~~~~~~~~~h~--~~V~~v~~s~~g~~lasgs~Dg--~i~lwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 84 (335)
.|++.+.| .|. .....+.|+. +.+..|.+.+| .|+.+|+++++..+.+....... ..++.. ++. +....-
T Consensus 8 ~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~-ly~ltw 82 (243)
T 3mbr_X 8 GYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDR-LIQLTW 82 (243)
T ss_dssp CEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTE-EEEEES
T ss_pred ceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCE-EEEEEe
Confidence 57778888 665 4477999987 67777877764 99999999999887664332211 122222 333 344455
Q ss_pred CCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecC-Ccc-----eEEECC
Q psy16316 85 IDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG-SRP-----IAAFDP 158 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-~~~-----~~~~~~ 158 (335)
.++.+.++|..+.+.+.+++.-... +.++ +++..|+.+..++.|.++|..+.+....+.... ..+ -+.+ .
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~-~ 158 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW-V 158 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE-E
T ss_pred eCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE-e
Confidence 6899999999999999888743322 3444 455555555568899999999887766554321 111 1122 2
Q ss_pred CCCEEEEEEcCCeEEEEEccCCCCCceeeEEec----------cCCCccceEEEEccCCCEEEEEe
Q psy16316 159 EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA----------AEKECDWTGIKFSADGKYILIST 214 (335)
Q Consensus 159 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~s~~~~~l~~~~ 214 (335)
+|.+++....+..|.+.|..+.. ....+... .......++++++|++..|++++
T Consensus 159 ~G~lyanvw~s~~I~vIDp~tG~--V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 159 NGELLANVWLTSRIARIDPASGK--VVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTEEEEEETTTTEEEEECTTTCB--EEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEEECCCCC--EEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 67777777778899999987643 12222211 01122458999999888777765
No 252
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.72 E-value=7.4e-05 Score=64.23 Aligned_cols=241 Identities=14% Similarity=0.078 Sum_probs=136.7
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCC-eE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDD-TV 89 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i 89 (335)
.++...|... .....+.|+++|.++++-..++.|..||.+... .. ..........+++.+++. .+++....++ .+
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~-~~~~~~~p~gia~~~dG~-l~vad~~~~~~~v 97 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QI-HATVEGKVSGLAFTSNGD-LVATGWNADSIPV 97 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EE-EEECSSEEEEEEECTTSC-EEEEEECTTSCEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EE-EEeCCCCceeEEEcCCCc-EEEEeccCCcceE
Confidence 3444555443 457899999999988888788999999986532 22 222233466677777655 3444333222 46
Q ss_pred EEEEcCCCceEeeec-CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeE-EEe--------cCCcceEEECCC
Q psy16316 90 RYLSLHDNKYIRYFP-GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGI-MHV--------SGSRPIAAFDPE 159 (335)
Q Consensus 90 ~~~~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~-~~~--------~~~~~~~~~~~~ 159 (335)
..++..+++...... ........++..+.+..+++-..++.|.++|..++..... ... ........++++
T Consensus 98 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~d 177 (306)
T 2p4o_A 98 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF 177 (306)
T ss_dssp EEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE
T ss_pred EEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcC
Confidence 566777766543222 1122334555555555566655688888888765321110 000 000111123667
Q ss_pred CC-EEEEEEcCCeEEEEEccCC-CCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc
Q psy16316 160 GL-IFGVGVNSDTIKLYDVRSF-DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 160 ~~-~~~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 237 (335)
+. ++++-...+.|..+|+... .......+... ....+++++++|++.++....+.|..++.. ++... +....
T Consensus 178 g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~-~~~~~ 251 (306)
T 2p4o_A 178 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTI-IAQAE 251 (306)
T ss_dssp TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEE-EECGG
T ss_pred CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEE-Eeecc
Confidence 65 5555666789999998641 11111111111 123568999999877776667889999975 54322 21111
Q ss_pred cCCCCceEEEEc---CCCcEEEEEeCC
Q psy16316 238 NNKGCPLEASFT---PDSKYVISGSTD 261 (335)
Q Consensus 238 ~~~~~v~~~~~s---p~~~~l~tgs~d 261 (335)
.....+.+++|. |+++.|...+..
T Consensus 252 ~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 252 QGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred cccCCceEEEEecccCCCCEEEEECCC
Confidence 223457889998 887665555443
No 253
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.69 E-value=2.1e-05 Score=74.10 Aligned_cols=257 Identities=9% Similarity=0.049 Sum_probs=151.8
Q ss_pred EEEecCCCeEEEEEccCCcceeeeecccc----cce-EEEEecCCCeeEEeecC-----CCCeEEEEEcCCCceEeeecC
Q psy16316 36 LISCSEDDQIVIYDCELGTNKRTVFSKKY----GVD-LIRFTHAKQAAIHASTK-----IDDTVRYLSLHDNKYIRYFPG 105 (335)
Q Consensus 36 lasgs~Dg~i~lwd~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~ 105 (335)
++.++.|+.+.-+|.++|+.+........ .+. ..... .. .+++.+. .++.++-+|..+++.+-.+..
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 77888999999999999988765432221 111 11111 12 2333322 378999999999987654432
Q ss_pred CCCC-------------------------------------eE-EEEECCCCCEEEEeeCC----------------CcE
Q psy16316 106 HTKK-------------------------------------VN-SLCLSPIDDTFISGSYD----------------KTV 131 (335)
Q Consensus 106 H~~~-------------------------------------V~-~~~~~~~~~~l~s~s~D----------------~~i 131 (335)
.... ++ ..++.+...++..++.+ ++|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 1110 11 34555666677666554 489
Q ss_pred EEeecCCCCceeEEEecCC---------cceE-EEC-CCC---CEEEEEEcCCeEEEEEccCCCCCceeeEEecc-----
Q psy16316 132 RLWDLRSPNCQGIMHVSGS---------RPIA-AFD-PEG---LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA----- 192 (335)
Q Consensus 132 ~vWd~~~~~~~~~~~~~~~---------~~~~-~~~-~~~---~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~----- 192 (335)
..+|..+++..-.++.... .+++ ... .+| ..++.++.++.+.++|.++.+. ........
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~--lw~~~~~~~~~~~ 358 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL--VSANKLDDTVNVF 358 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCE--EEEEESSTTCCSE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCE--eecccccCCcccc
Confidence 9999999987755543221 1222 221 456 4677788899999999876431 11111100
Q ss_pred -------------------------------CCCccceEEEEccCCCEEEEEe---------------------------
Q psy16316 193 -------------------------------EKECDWTGIKFSADGKYILIST--------------------------- 214 (335)
Q Consensus 193 -------------------------------~~~~~~~~~~~s~~~~~l~~~~--------------------------- 214 (335)
.....+..++++|+...+++..
T Consensus 359 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 438 (599)
T 1w6s_A 359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNM 438 (599)
T ss_dssp EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred cccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceeccccee
Confidence 0012345678888877765532
Q ss_pred ------------CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCCCC
Q psy16316 215 ------------NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADH 282 (335)
Q Consensus 215 ------------~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~~h 282 (335)
..+.+.-||+.+++.+-+..... ....-.+...+.++..|+.|+.++.||..+|+++.......
T Consensus 439 ~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~ 514 (599)
T 1w6s_A 439 YPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF----AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS 514 (599)
T ss_dssp EECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC----CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCC
Confidence 23678889999988765543211 11111123346777789999999999999999887765433
Q ss_pred CCCeEEEEeCCCCcE-EEee
Q psy16316 283 PSPVQTIQFNPKFNM-MASA 301 (335)
Q Consensus 283 ~~~v~~v~~sp~~~~-~~s~ 301 (335)
.....-+.+..+|++ ++..
T Consensus 515 g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 515 GAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp CCCSCCEEEEETTEEEEEEE
T ss_pred CcEeccEEEEeCCEEEEEEE
Confidence 222233556667764 4443
No 254
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.69 E-value=3.8e-05 Score=72.27 Aligned_cols=264 Identities=12% Similarity=0.103 Sum_probs=153.1
Q ss_pred CCEEEEecCCCeEEEEEccCCcceeeeecccc----cc--eEEEEec--CCCeeEEeec-----CCCCeEEEEEcCCCce
Q psy16316 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKKY----GV--DLIRFTH--AKQAAIHAST-----KIDDTVRYLSLHDNKY 99 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~----~~--~~~~~~~--~~~~~~~~~~-----~~d~~i~~~~~~~~~~ 99 (335)
+..++.++.|+.+.-.|.++|+.+........ .+ ..+.... .....+++.. ..++.+.-+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45677788899999999999988765543221 11 1111111 0111233322 1368899999988887
Q ss_pred EeeecCCCC----------------------------------------Ce-EEEEECCCCCEEEEeeC-----------
Q psy16316 100 IRYFPGHTK----------------------------------------KV-NSLCLSPIDDTFISGSY----------- 127 (335)
Q Consensus 100 ~~~~~~H~~----------------------------------------~V-~~~~~~~~~~~l~s~s~----------- 127 (335)
+-..+.... .+ ...++.|...++..+..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 654322100 00 13456666666655442
Q ss_pred ---------C----CcEEEeecCCCCceeEEEecC---------CcceEE-EC-CCCC---EEEEEEcCCeEEEEEccCC
Q psy16316 128 ---------D----KTVRLWDLRSPNCQGIMHVSG---------SRPIAA-FD-PEGL---IFGVGVNSDTIKLYDVRSF 180 (335)
Q Consensus 128 ---------D----~~i~vWd~~~~~~~~~~~~~~---------~~~~~~-~~-~~~~---~~~~~~~d~~v~iwd~~~~ 180 (335)
| +.|..+|..+++..-.++... ..+++. .. .+|+ +++.++.++.+.++|..+.
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence 3 689999999998776554321 112222 21 4563 6778889999999997653
Q ss_pred CCCceeeEEecc------------------------------------------CCCccceEEEEccCCCEEEEEe----
Q psy16316 181 DKGPFSNFKFAA------------------------------------------EKECDWTGIKFSADGKYILIST---- 214 (335)
Q Consensus 181 ~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~s~~~~~l~~~~---- 214 (335)
+. ........ .....+..++++|+...+++..
T Consensus 357 ~~--lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~ 434 (582)
T 1flg_A 357 KL--QNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK 434 (582)
T ss_dssp CE--EEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred CE--ecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence 21 11111100 0001234578888776665543
Q ss_pred -----------------------------CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEE
Q psy16316 215 -----------------------------NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIH 265 (335)
Q Consensus 215 -----------------------------~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~ 265 (335)
..+.|.-||+.+++.+-+......... -.....+.+++.|+.|+.++
T Consensus 435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~----g~~~tagglvf~g~~dg~l~ 510 (582)
T 1flg_A 435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWA----GVLATAGNLVFTGTGDGYFK 510 (582)
T ss_dssp EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCS----CCEEETTTEEEEECTTSEEE
T ss_pred eeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcc----cceEeCCCEEEEECCCCcEE
Confidence 247799999999987655543211111 11223466788899999999
Q ss_pred EEECCCCeeEEEeCCCCCCCeEEEEeCCCCcE-EEeee
Q psy16316 266 IWNAEKGFKVCVLDADHPSPVQTIQFNPKFNM-MASAC 302 (335)
Q Consensus 266 iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~-~~s~~ 302 (335)
.||..+|+++............-+.|..+|++ ++..+
T Consensus 511 A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 511 AFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp EEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence 99999999887765433222223667778864 44433
No 255
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.64 E-value=0.00047 Score=67.38 Aligned_cols=277 Identities=10% Similarity=0.122 Sum_probs=165.4
Q ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecc-------cccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK-------KYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
...|.++...++|.+.+.. .++-+.+||.++++........ ...+..+... ....+.+++. + .+.+++
T Consensus 214 ~~~i~~i~~d~~g~lwigt-~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d--~~g~lWigt~-~-Gl~~~~ 288 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVAT-EGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMD--SQNRLWIGTF-N-DLNIYH 288 (795)
T ss_dssp CCCEEEEEEEETTEEEEEE-BSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEEC--TTSCEEEEES-S-CEEEEE
T ss_pred CCeeEEEEEcCCCCEEEEE-CCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEc--CCCCEEEEeC-C-hhheEc
Confidence 4668888888888766544 4445888998776543221111 1234444433 3333333332 3 688889
Q ss_pred cCCCceEeeecC-------CCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe-------cCCcceEEECCC
Q psy16316 94 LHDNKYIRYFPG-------HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV-------SGSRPIAAFDPE 159 (335)
Q Consensus 94 ~~~~~~~~~~~~-------H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-------~~~~~~~~~~~~ 159 (335)
..+++....... ....|.++...++|+ |..|+.++-|..+|..+......... ...+..+..+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~ 367 (795)
T 4a2l_A 289 EGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKD 367 (795)
T ss_dssp TTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTT
T ss_pred CCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCC
Confidence 877765443221 235799999988775 66677778899998765443221111 112334556777
Q ss_pred CCEEEEEEcCCeEEEEEccCCCCCceeeEEecc------CCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeee
Q psy16316 160 GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAA------EKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL 233 (335)
Q Consensus 160 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 233 (335)
|++.+ |+.++-+..||..+. ....+.... -....+.++..+++++.|.+|+.++-+..||..+++... +
T Consensus 368 g~lWi-Gt~~~Gl~~~~~~~~---~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~ 442 (795)
T 4a2l_A 368 KNLWI-GTNDGGLNLYNPITQ---RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-F 442 (795)
T ss_dssp SCEEE-EESSSCEEEECTTTC---CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-E
T ss_pred CCEEE-EECCCCeEEEcCCCC---cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-e
Confidence 77654 666667888887542 122221110 012356788888889856667777779999988875432 2
Q ss_pred ccc--ccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeC-----CCCCCCeEEEEeCCCCcEEEeeeceeE
Q psy16316 234 AGF--LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD-----ADHPSPVQTIQFNPKFNMMASACTNLA 306 (335)
Q Consensus 234 ~~~--~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~-----~~h~~~v~~v~~sp~~~~~~s~~~~~~ 306 (335)
... ......+.++...++|.+.+... +| +.+||..++....... .-....|.++...++|.+.+...+.+.
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~Gl~ 520 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEGLS 520 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEESSCEE
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeCCceE
Confidence 210 01234577888888887665544 44 9999987764332211 112367999999999988776655566
Q ss_pred Eecc
Q psy16316 307 FWIP 310 (335)
Q Consensus 307 ~w~~ 310 (335)
.|.+
T Consensus 521 ~~~~ 524 (795)
T 4a2l_A 521 VFKQ 524 (795)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 6654
No 256
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.59 E-value=3e-05 Score=66.97 Aligned_cols=216 Identities=10% Similarity=0.029 Sum_probs=129.3
Q ss_pred CCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEE
Q psy16316 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNS 112 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~ 112 (335)
+..+..++.++.+..+|.+ ++...........+..+....++ .+.+ +..++.+..+|.. ++....+......+.+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g--~l~v-gt~~~~l~~~d~~-g~~~~~~~~~~~~~~~ 181 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG--TIYV-GSNDNYLYAINPD-GTEKWRFKTNDAITSA 181 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS--CEEE-ECTTSEEEEECTT-SCEEEEEECSSCCCSC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC--EEEE-EcCCCEEEEECCC-CCEeEEEecCCCceee
Confidence 4456678888999999988 66554443333333333333322 2333 3356889999988 7776666655566777
Q ss_pred EEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEec
Q psy16316 113 LCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA 191 (335)
Q Consensus 113 ~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~ 191 (335)
+...+++...+.. +.|..+| .+++........ .....+..++++.+++ ++.++.+..+|... .....+...
T Consensus 182 ~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~~g---~~~~~~~~~ 253 (330)
T 3hxj_A 182 ASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHLYAINPDG---TEKWRFKTG 253 (330)
T ss_dssp CEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EETTTEEEEECTTS---CEEEEEECS
T ss_pred eEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-EcCCCeEEEECCCC---CEeEEeeCC
Confidence 8887777755544 7899999 555544333222 2234456777776655 55667777777422 222222211
Q ss_pred cCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECC
Q psy16316 192 AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 192 ~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~ 270 (335)
......+.+.+++. |.+++.++.+..+|. +++....+.. ....+.++..++++.+ ..|+.+|.+++....
T Consensus 254 ---~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~---~~~~~~~~~~d~~g~l-~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 254 ---KRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFET---GSWIIATPVIDENGTI-YFGTRNGKFYALFNL 323 (330)
T ss_dssp ---SCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEEC---SSCCCSCCEECTTCCE-EEECTTSCEEEEEC-
T ss_pred ---CCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEc---CCccccceEEcCCCEE-EEEcCCCeEEEEecc
Confidence 11123355666665 566777878999996 6665544432 1233445677777764 558889999988764
No 257
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.57 E-value=9.2e-05 Score=61.68 Aligned_cols=206 Identities=10% Similarity=0.089 Sum_probs=127.2
Q ss_pred eecCCCCCeEEEEECCCCCEEEE-eeCCCcEEEeecCCCCceeEEEecC--CcceEEECCCCCEEEEEEcCCeEEEEEcc
Q psy16316 102 YFPGHTKKVNSLCLSPIDDTFIS-GSYDKTVRLWDLRSPNCQGIMHVSG--SRPIAAFDPEGLIFGVGVNSDTIKLYDVR 178 (335)
Q Consensus 102 ~~~~H~~~V~~~~~~~~~~~l~s-~s~D~~i~vWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 178 (335)
.+.|-...+..++++|++..|++ ...++.|...|+. ++....+...+ ...-+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 35565678999999998776655 5678889999987 66665554443 33445677777766665566788888876
Q ss_pred CCCC-CceeeEEec---cCCCccceEEEEccCCCEEEEEeCCCeEEEEECC---CCeeeeeecc----cccCCCCceEEE
Q psy16316 179 SFDK-GPFSNFKFA---AEKECDWTGIKFSADGKYILISTNGSIIRTFDAY---NGQCLQTLAG----FLNNKGCPLEAS 247 (335)
Q Consensus 179 ~~~~-~~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~---~~~~~~~~~~----~~~~~~~v~~~~ 247 (335)
.... ......... ...+..+.+++++|++..|.++.+..-..+|... ....+..+.. .......+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5321 011222111 1234456799999999877777665444444433 1111222211 011233567899
Q ss_pred EcCCC-cEEEEEeCCCcEEEEECCCCeeEEEe--CCCC------CCCeEEEEeCCCCcEEEeeeceeEEecc
Q psy16316 248 FTPDS-KYVISGSTDGRIHIWNAEKGFKVCVL--DADH------PSPVQTIQFNPKFNMMASACTNLAFWIP 310 (335)
Q Consensus 248 ~sp~~-~~l~tgs~dg~v~iwd~~~~~~~~~~--~~~h------~~~v~~v~~sp~~~~~~s~~~~~~~w~~ 310 (335)
++|.. .+++.......+.++|.. +.....+ ..+. -.+-..++|.|+|++.+++-.| .+|..
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n-~~y~f 249 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPN-RFYRF 249 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTT-EEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCc-eEEEE
Confidence 99954 566666677888999975 4443333 2211 1245789999999988887777 55544
No 258
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.57 E-value=6.8e-05 Score=67.89 Aligned_cols=244 Identities=10% Similarity=0.049 Sum_probs=139.2
Q ss_pred ccEEEEEECCC--CCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCC--CCe-EEEEEcCC
Q psy16316 22 DKITSIDYSAD--GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI--DDT-VRYLSLHD 96 (335)
Q Consensus 22 ~~V~~v~~s~~--g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~-i~~~~~~~ 96 (335)
.....++|+|+ +..|..+...+.|+.+|.+++.... +.........+++.+++. .+++.... +.. +...+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 34678999985 3334444333899999987765443 333334567788887766 33333211 111 22222222
Q ss_pred Cce-EeeecCCCCCeEEEEECC-CCCEEEEeeCCCcEEEeecCCCCc-eeEEEecCC--cceEEECCCCC-EEEEEEcCC
Q psy16316 97 NKY-IRYFPGHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRSPNC-QGIMHVSGS--RPIAAFDPEGL-IFGVGVNSD 170 (335)
Q Consensus 97 ~~~-~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~-~~~~~~~~~--~~~~~~~~~~~-~~~~~~~d~ 170 (335)
+.. ...+. .-.....++++| ++.+.++-..++.|+.+|..++.. ......... ...++++|+++ ++++-...+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 111 01111 223456788999 677777777788999999886665 222222211 12478999998 666666778
Q ss_pred eEEEEEccCCCCC--ceeeEEeccC------------CCccceEEEE---------ccCCCEEEEEeCCCeEEEEECCCC
Q psy16316 171 TIKLYDVRSFDKG--PFSNFKFAAE------------KECDWTGIKF---------SADGKYILISTNGSIIRTFDAYNG 227 (335)
Q Consensus 171 ~v~iwd~~~~~~~--~~~~~~~~~~------------~~~~~~~~~~---------s~~~~~l~~~~~~~~i~i~d~~~~ 227 (335)
.|..++....... ....+.-... .-....++++ .+++.+.++-...+.|+.++. ++
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 9999886531110 0011110000 0012356899 777777666667788999985 55
Q ss_pred eeeeeeccccc---------------CCCCceEEEEc-CCCcEEEEEeCCCcEEEEECC
Q psy16316 228 QCLQTLAGFLN---------------NKGCPLEASFT-PDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 228 ~~~~~~~~~~~---------------~~~~v~~~~~s-p~~~~l~tgs~dg~v~iwd~~ 270 (335)
. +.++.+... .-..+..++++ +++.++++=..+.+|+.++++
T Consensus 375 ~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 R-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp E-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred C-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 3 333332211 12346778888 677777776677788877754
No 259
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.54 E-value=0.00038 Score=61.08 Aligned_cols=246 Identities=11% Similarity=0.097 Sum_probs=145.6
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCce
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY 99 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 99 (335)
+.+..+|....+++.++++- ...|+..+++..... .+.........++|.+.....+.+ ....+.|..+++.....
T Consensus 32 ~~d~~~C~~~~~~~~ll~~~--~~~I~~i~~~g~~~~-~~~~~~~~~~~l~~d~~~~~ly~~-D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 32 RPDRRSCKALGPEPVLLFAN--RIDIRQVLPHRSEYT-LLLNNLENAIALDFHHRRELVFWS-DVTLDRILRANLNGSNV 107 (349)
T ss_dssp CTTSSCEEESSSCCEEEEEC--BSCEEEECTTSCCEE-EEECSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSC
T ss_pred CCCCCcccccccCceeEeec--ccceEEEeCCCCeeE-EeecCCCceEEEEEeccccEEEEE-eccCCceEEEecCCCCc
Confidence 34445677767755444443 355877887654432 222223345677777655544443 33467888888877654
Q ss_pred EeeecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECC-CCCEEEEEEcC-CeEEEE
Q psy16316 100 IRYFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDP-EGLIFGVGVNS-DTIKLY 175 (335)
Q Consensus 100 ~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~d-~~v~iw 175 (335)
...+.........+++.+. +++.++-...+.|.+.++............ .....++++| ++.++.+-... +.|..+
T Consensus 108 ~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~ 187 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS 187 (349)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEE
Confidence 4444333345678889874 556677777889999998754433222111 1123467887 45566666555 788888
Q ss_pred EccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcE
Q psy16316 176 DVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKY 254 (335)
Q Consensus 176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 254 (335)
++..... .. .....-...++++++|++..|..+. ..+.|..+++........+.. ....+..+++ ..+..
T Consensus 188 ~~dG~~~---~~--~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~---~~~~P~giav-~~~~l 258 (349)
T 3v64_C 188 SMDGSGR---RI--IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ---GLPHPFAITV-FEDSL 258 (349)
T ss_dssp ETTSCSC---EE--SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---SCSSEEEEEE-ETTEE
T ss_pred eCCCCCc---EE--EEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeC---CCCCceEEEE-ECCEE
Confidence 8754211 11 1111122347899999887777665 456799999765332222211 2345677888 45667
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEe
Q psy16316 255 VISGSTDGRIHIWNAEKGFKVCVL 278 (335)
Q Consensus 255 l~tgs~dg~v~iwd~~~~~~~~~~ 278 (335)
+++-...+.|...+..++.....+
T Consensus 259 y~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 259 YWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEecCCCCeEEEEEccCCCccEEe
Confidence 777777888999986666544444
No 260
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.53 E-value=5.7e-06 Score=79.28 Aligned_cols=192 Identities=13% Similarity=0.085 Sum_probs=111.1
Q ss_pred CCEEEEecCCCeEEEEEccCCcceeeeecccccc-----------eEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEe
Q psy16316 33 GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV-----------DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR 101 (335)
Q Consensus 33 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 101 (335)
+..+..++.++.|.-+|.++|+.+.......... ..+... .. .+..+..|+.+..+|..+++.+-
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~v~v~~~dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GD--KVYVGTLDGRLIALDAKTGKAIW 141 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BT--EEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--CC--EEEEEcCCCEEEEEECCCCCEee
Confidence 4566777788999999999998877653321100 011111 12 22334468999999999998876
Q ss_pred eecCCC----CCeEEEEECCCCCEEEEeeC------CCcEEEeecCCCCceeEEEecC----------------------
Q psy16316 102 YFPGHT----KKVNSLCLSPIDDTFISGSY------DKTVRLWDLRSPNCQGIMHVSG---------------------- 149 (335)
Q Consensus 102 ~~~~H~----~~V~~~~~~~~~~~l~s~s~------D~~i~vWd~~~~~~~~~~~~~~---------------------- 149 (335)
.++... ..+.+--.- .+..++.++. ++.|..+|..+++....+....
T Consensus 142 ~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 142 SQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp EEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred eeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 554321 111110000 1334544433 6899999999998776554210
Q ss_pred ----------CcceEEECCCCCEEEEEEcCC-------------------eEEEEEccCCCCCceeeEEeccC------C
Q psy16316 150 ----------SRPIAAFDPEGLIFGVGVNSD-------------------TIKLYDVRSFDKGPFSNFKFAAE------K 194 (335)
Q Consensus 150 ----------~~~~~~~~~~~~~~~~~~~d~-------------------~v~iwd~~~~~~~~~~~~~~~~~------~ 194 (335)
.....+++++..++..++.++ .|.-+|.++.+. .-.++.... .
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~--~W~~~~~~~~~wd~~~ 298 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL--AWHYQVTPGDSWDFTA 298 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE--EEEEESSTTCCSCCCC
T ss_pred ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce--eeEeecCCCccccccC
Confidence 001246777777777776554 388888876431 111221100 0
Q ss_pred CccceEEEEccCCC---EEEEEeCCCeEEEEECCCCeeee
Q psy16316 195 ECDWTGIKFSADGK---YILISTNGSIIRTFDAYNGQCLQ 231 (335)
Q Consensus 195 ~~~~~~~~~s~~~~---~l~~~~~~~~i~i~d~~~~~~~~ 231 (335)
..+..-..+..+|+ .++.++.++.++++|..+|+.+.
T Consensus 299 ~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~ 338 (668)
T 1kv9_A 299 TQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLIS 338 (668)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred CCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence 01111122334665 67888899999999999998763
No 261
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.50 E-value=0.00046 Score=61.41 Aligned_cols=242 Identities=10% Similarity=0.075 Sum_probs=142.5
Q ss_pred EEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeee
Q psy16316 24 ITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYF 103 (335)
Q Consensus 24 V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 103 (335)
-+|....+++.++++ ....|+..++....... +.........++|.+.....+.+ ....+.|..+++........+
T Consensus 79 ~~C~~~~~~~~l~~~--~~~~I~~i~~~~~~~~~-~~~~~~~~~gl~~d~~~~~ly~~-D~~~~~I~r~~~~g~~~~~~~ 154 (386)
T 3v65_B 79 RSCKALGPEPVLLFA--NRIDIRQVLPHRSEYTL-LLNNLENAIALDFHHRRELVFWS-DVTLDRILRANLNGSNVEEVV 154 (386)
T ss_dssp SCEEECSSCCEEEEE--CBSCEEEECTTSCCCEE-EECSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCCEEEEE
T ss_pred CeECCccccceeEee--cCccceeeccCCCcEEE-EecCCCccEEEEEecCCCeEEEE-eCCCCcEEEEecCCCCcEEEE
Confidence 345555564433333 33578888887654333 22233346677777655544443 345678888888776544444
Q ss_pred cCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECCC-CCEEEEEEcC-CeEEEEEccC
Q psy16316 104 PGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPE-GLIFGVGVNS-DTIKLYDVRS 179 (335)
Q Consensus 104 ~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~d-~~v~iwd~~~ 179 (335)
.........+++.+. +.+.++-...+.|.+.++............ .....++++|. +.++.+-... +.|..+++..
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 433345568888875 456677777889999998754433222211 11234677775 4555555555 6788888754
Q ss_pred CCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEE
Q psy16316 180 FDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISG 258 (335)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tg 258 (335)
.. ...+ ....-...++++++|++..|..+. ..+.|..+++........+.. ....+..+++ ..+.++++-
T Consensus 235 ~~---~~~~--~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~---~~~~P~giav-~~~~ly~td 305 (386)
T 3v65_B 235 SG---RRII--ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ---GLPHPFAITV-FEDSLYWTD 305 (386)
T ss_dssp CS---CEEE--ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS---SCSSEEEEEE-ETTEEEEEE
T ss_pred CC---cEEE--EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC---CCCCceEEEE-ECCEEEEee
Confidence 21 1111 111122347899998877777664 456799999764332222221 2335677888 456677777
Q ss_pred eCCCcEEEEECCCCeeEEEe
Q psy16316 259 STDGRIHIWNAEKGFKVCVL 278 (335)
Q Consensus 259 s~dg~v~iwd~~~~~~~~~~ 278 (335)
...+.|..++..++.....+
T Consensus 306 ~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 306 WHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp TTTTEEEEEETTTCCSCEEE
T ss_pred CCCCeEEEEECCCCcceEEE
Confidence 78889999997666554444
No 262
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.45 E-value=0.00012 Score=66.13 Aligned_cols=243 Identities=16% Similarity=0.137 Sum_probs=137.4
Q ss_pred cEEEEEECC-CCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCC---CCeEEEEEcCCCc
Q psy16316 23 KITSIDYSA-DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI---DDTVRYLSLHDNK 98 (335)
Q Consensus 23 ~V~~v~~s~-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~i~~~~~~~~~ 98 (335)
....|+++| ++..|..+...+.|+.+|.+.+... .+.........+++.+++...+++.... ...+.+.+.. +.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence 457889998 3444555544488999998776543 3333334466788887766455444321 1123333432 22
Q ss_pred eE--eeecCCCCCeEEEEECC-CCCEEEEeeCCCcEEEeecCCCCceeEEEecC--CcceEEECCCCC-EEEEEEcCCeE
Q psy16316 99 YI--RYFPGHTKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG--SRPIAAFDPEGL-IFGVGVNSDTI 172 (335)
Q Consensus 99 ~~--~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~d~~v 172 (335)
.. ..+.. ......++++| ++.++++-..++.|..+|...+.......... ...-++++|+++ ++++-...+.|
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 21 22221 23456888999 67777777778999999987654423332222 123578999999 66666677899
Q ss_pred EEEEccCCCCC--ceeeEEecc------C-----CC-ccce-EEEEc--------cCCCEEEEEeCCCeEEEEECCCCee
Q psy16316 173 KLYDVRSFDKG--PFSNFKFAA------E-----KE-CDWT-GIKFS--------ADGKYILISTNGSIIRTFDAYNGQC 229 (335)
Q Consensus 173 ~iwd~~~~~~~--~~~~~~~~~------~-----~~-~~~~-~~~~s--------~~~~~l~~~~~~~~i~i~d~~~~~~ 229 (335)
..++....... ....+.-.. + .. ..-. .++.. +++.+.++-..++.|+.++. ++..
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v 373 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRV 373 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcE
Confidence 99887532100 000111000 0 00 0112 45553 34555555556678888884 4543
Q ss_pred eeeeccc-----cc----------CCCCceEEEEcC-CCcEEEEEeCCCcEEEEECC
Q psy16316 230 LQTLAGF-----LN----------NKGCPLEASFTP-DSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 230 ~~~~~~~-----~~----------~~~~v~~~~~sp-~~~~l~tgs~dg~v~iwd~~ 270 (335)
..+.+. .+ .-..+..++++| ++.++++-..+.+|+.++.+
T Consensus 374 -~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 374 -TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp -EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 333321 00 012577899999 46677776677788887754
No 263
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.44 E-value=0.00013 Score=63.03 Aligned_cols=229 Identities=11% Similarity=0.091 Sum_probs=127.6
Q ss_pred ceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeec-----------C--------CCCCeEEEEECC-CCCEEEEe
Q psy16316 66 VDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFP-----------G--------HTKKVNSLCLSP-IDDTFISG 125 (335)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-----------~--------H~~~V~~~~~~~-~~~~l~s~ 125 (335)
...+++.+++...+ .+..++.|..|+..+++...... + ....+..+++.+ +++++++
T Consensus 21 p~~i~~d~~g~~l~--v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~- 97 (322)
T 2fp8_A 21 PNSFTFDSTNKGFY--TSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV- 97 (322)
T ss_dssp CCCEECCTTCSSEE--EECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE-
T ss_pred ceEEEEcCCCCEEE--EEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE-
Confidence 34455555433222 23346778778776654322110 0 113578899997 5654444
Q ss_pred eCCCcEEEeecCCCCceeEEEe-c----CCcceEEECC-CCCEEEEEEc-----------------CCeEEEEEccCCCC
Q psy16316 126 SYDKTVRLWDLRSPNCQGIMHV-S----GSRPIAAFDP-EGLIFGVGVN-----------------SDTIKLYDVRSFDK 182 (335)
Q Consensus 126 s~D~~i~vWd~~~~~~~~~~~~-~----~~~~~~~~~~-~~~~~~~~~~-----------------d~~v~iwd~~~~~~ 182 (335)
...+.|..+|..++........ . .....+++++ +|+++++... ++.+..+|.....
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~- 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE- 176 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE-
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE-
Confidence 4445588888765433222111 1 1123467889 8988876533 2567777764321
Q ss_pred CceeeEEeccCCCccceEEEEccCCCEEEEE-eCCCeEEEEECCCCe--eeeeecccccCCCCceEEEEcCCCcEEEEEe
Q psy16316 183 GPFSNFKFAAEKECDWTGIKFSADGKYILIS-TNGSIIRTFDAYNGQ--CLQTLAGFLNNKGCPLEASFTPDSKYVISGS 259 (335)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~~~~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs 259 (335)
....... -...++++++|+++.|+++ +..+.|..|++.... ..+.+.. ... +..++++++|+++++..
T Consensus 177 --~~~~~~~---~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~G~l~va~~ 247 (322)
T 2fp8_A 177 --TTLLLKE---LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNADGHFWVSSS 247 (322)
T ss_dssp --EEEEEEE---ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTTSCEEEEEE
T ss_pred --EEEeccC---CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCCCCEEEEec
Confidence 1111110 1123579999999977666 456789999987521 1122221 123 67899999999877765
Q ss_pred C----------CCcEEEEECCCCeeEEEeCCCC---CCCeEEEEeCCCCcEEEeeec--eeEEec
Q psy16316 260 T----------DGRIHIWNAEKGFKVCVLDADH---PSPVQTIQFNPKFNMMASACT--NLAFWI 309 (335)
Q Consensus 260 ~----------dg~v~iwd~~~~~~~~~~~~~h---~~~v~~v~~sp~~~~~~s~~~--~~~~w~ 309 (335)
. .+.|..+|.. +.....+.... ...+..+++ .++.+.++... .+..+.
T Consensus 248 ~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 248 EELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp EETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred CcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence 4 4678888864 65555443321 235667776 35666665433 344443
No 264
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.42 E-value=0.00064 Score=58.27 Aligned_cols=222 Identities=8% Similarity=0.000 Sum_probs=126.0
Q ss_pred ceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCC--cEEEeecCCCCcee
Q psy16316 66 VDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDK--TVRLWDLRSPNCQG 143 (335)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~--~i~vWd~~~~~~~~ 143 (335)
...+++.+++. ++.+...++.|..+|.... ....+. -......+++.++++++++..... .|..+|..+++...
T Consensus 34 pegia~~~~g~--lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 34 LENLASAPDGT--IFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp EEEEEECTTSC--EEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred cceEEECCCCC--EEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 34556655433 4444445677877877653 333232 124678999999998777654432 46667777766543
Q ss_pred EEEecCC--cceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEE------eccCCCccceEEEEccCCCEEEEEe-
Q psy16316 144 IMHVSGS--RPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFK------FAAEKECDWTGIKFSADGKYILIST- 214 (335)
Q Consensus 144 ~~~~~~~--~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~s~~~~~l~~~~- 214 (335)
....... ....+..+++..+++...++.|..+|...... ...... .....-...+++ +|++..|+++.
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~-~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~ 186 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG-SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT 186 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE-EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE-eEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence 3332211 11223345555566555578888888653100 000000 000011122455 88888776654
Q ss_pred CCCeEEEEECCC-Cee--eeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEE--eCCCCCCCeEEE
Q psy16316 215 NGSIIRTFDAYN-GQC--LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCV--LDADHPSPVQTI 289 (335)
Q Consensus 215 ~~~~i~i~d~~~-~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~--~~~~h~~~v~~v 289 (335)
..+.|..|+... ++. .+.+.. ...+..++++++|+++++....++|.+++.. +..... +.. .....+++
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~-~~~~p~~~ 260 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ-GVIGSTAV 260 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG-TCTTEEEE
T ss_pred CCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc-ccCCceEE
Confidence 467899999864 321 111111 1245679999999988888888899999975 544322 222 22457899
Q ss_pred EeC---CCCcEEEe
Q psy16316 290 QFN---PKFNMMAS 300 (335)
Q Consensus 290 ~~s---p~~~~~~s 300 (335)
+|. |++..|..
T Consensus 261 a~~g~~~d~~~LyV 274 (306)
T 2p4o_A 261 AFGQTEGDCTAIYV 274 (306)
T ss_dssp EECCSTTTTTEEEE
T ss_pred EEecccCCCCEEEE
Confidence 998 88654443
No 265
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.40 E-value=0.00012 Score=68.72 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=105.8
Q ss_pred CCEEEEecC-CCeEEEEEc-cCCcceeeeecccc-cc----------eEEEEecCCCeeEEeecCCCCeEEEEEcCCCce
Q psy16316 33 GLLLISCSE-DDQIVIYDC-ELGTNKRTVFSKKY-GV----------DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY 99 (335)
Q Consensus 33 g~~lasgs~-Dg~i~lwd~-~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 99 (335)
+..+..++. ++.|.-.|. ++|+.+........ .. ..+.. .... + ..+..|+.+..+|..+++.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-v-~v~~~dg~l~alD~~tG~~ 137 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQ-I-VKKQANGHLLALDAKTGKI 137 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTE-E-EEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCE-E-EEEeCCCEEEEEECCCCCE
Confidence 344555566 899999999 89988766532211 00 01111 1222 2 2334588999999999987
Q ss_pred Eeeec--CCCC--CeEE-EEECCCCCEEEEeeC------CCcEEEeecCCCCceeEEEecCCc-----------------
Q psy16316 100 IRYFP--GHTK--KVNS-LCLSPIDDTFISGSY------DKTVRLWDLRSPNCQGIMHVSGSR----------------- 151 (335)
Q Consensus 100 ~~~~~--~H~~--~V~~-~~~~~~~~~l~s~s~------D~~i~vWd~~~~~~~~~~~~~~~~----------------- 151 (335)
+-.++ ++.. .+.+ ..+ .++ .++.++. |+.|..+|..+++...........
T Consensus 138 ~W~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G 215 (571)
T 2ad6_A 138 NWEVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEEecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence 75543 2211 1211 111 133 4555544 799999999999876555432211
Q ss_pred ----------------------ceEEECCCCCEEEEEEcC----------------CeEEEEEccCCCCCceeeEEeccC
Q psy16316 152 ----------------------PIAAFDPEGLIFGVGVNS----------------DTIKLYDVRSFDKGPFSNFKFAAE 193 (335)
Q Consensus 152 ----------------------~~~~~~~~~~~~~~~~~d----------------~~v~iwd~~~~~~~~~~~~~~~~~ 193 (335)
...+++++...+..+..+ +.|..+|.++.+. .-.++....
T Consensus 216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~--~W~~~~~~~ 293 (571)
T 2ad6_A 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA--KWGYQKTPH 293 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE--EEEEESSTT
T ss_pred ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE--EEEecCCCC
Confidence 123455555555554421 2588888876431 111211110
Q ss_pred ------CCccceEEEEccCCC---EEEEEeCCCeEEEEECCCCeeeeee
Q psy16316 194 ------KECDWTGIKFSADGK---YILISTNGSIIRTFDAYNGQCLQTL 233 (335)
Q Consensus 194 ------~~~~~~~~~~s~~~~---~l~~~~~~~~i~i~d~~~~~~~~~~ 233 (335)
......-+...++|+ .++.++.++.++++|..+++.+...
T Consensus 294 d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 294 DEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp CSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence 001111122335674 5677888999999999999876554
No 266
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.37 E-value=0.0024 Score=62.37 Aligned_cols=275 Identities=9% Similarity=0.028 Sum_probs=160.6
Q ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeec--------ccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS--------KKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
...|.++...++|.+-+ |+.++-|..||..++....-... ....|..+.....+....+++ .++.+..+
T Consensus 356 ~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt--~~~Gl~~~ 432 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT--HAGGLSIL 432 (795)
T ss_dssp CSSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE--TTTEEEEE
T ss_pred CCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe--CcCceeEE
Confidence 45699999999998554 67777899999877654322111 112344444433332123332 35678889
Q ss_pred EcCCCceEeeec----CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe-------cCCcceEEECCCCC
Q psy16316 93 SLHDNKYIRYFP----GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV-------SGSRPIAAFDPEGL 161 (335)
Q Consensus 93 ~~~~~~~~~~~~----~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 161 (335)
|..+++...... .+...|.++...+++++.+.. .+ -+.+||..+++....... ...+..+..+++|.
T Consensus 433 d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~ 510 (795)
T 4a2l_A 433 HRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKR 510 (795)
T ss_dssp ETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCC
T ss_pred eCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCC
Confidence 988776544322 234679999988887755544 44 588899876543322111 12233456677887
Q ss_pred EEEEEEcCCeEEEEEccCCCCCceeeEEe----ccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc
Q psy16316 162 IFGVGVNSDTIKLYDVRSFDKGPFSNFKF----AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 162 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 237 (335)
+.+.. . +-+..||..... . .+.. .......+.++..+++|.+.+++ .+ -+..||..+.+.. .+....
T Consensus 511 lWigt-~-~Gl~~~~~~~~~---~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~-~~~~~~ 581 (795)
T 4a2l_A 511 LWIGG-E-EGLSVFKQEGLD---I-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIK-RYNTTN 581 (795)
T ss_dssp EEEEE-S-SCEEEEEEETTE---E-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEE-EECGGG
T ss_pred EEEEe-C-CceEEEeCCCCe---E-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCcEE-EeCCCC
Confidence 76644 3 457778875421 1 1110 00112346788888999866554 44 5788898776533 332211
Q ss_pred c-CCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC--CC-CCCe--EEEEeCCCCcEEEeeeceeEEeccc
Q psy16316 238 N-NKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA--DH-PSPV--QTIQFNPKFNMMASACTNLAFWIPT 311 (335)
Q Consensus 238 ~-~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~--~h-~~~v--~~v~~sp~~~~~~s~~~~~~~w~~~ 311 (335)
+ ....+.++..+++|.+.+++ . +-|..|+..+.... .+.. +- ...+ .++...++|.+.+.+..-+....+.
T Consensus 582 gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl~~~~p~ 658 (795)
T 4a2l_A 582 GLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFR-NFTESDGLQSNQFNTASYCRTSVGQMYFGGINGITTFRPE 658 (795)
T ss_dssp TCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEE-EECGGGTCSCSCEEEEEEEECTTSCEEEEETTEEEEECGG
T ss_pred CCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEE-EcCCcCCCccccCccCceeECCCCeEEEecCCceEEEcHH
Confidence 1 22346778888888876665 3 44888998765432 2321 11 1222 4566788999888887666666664
Q ss_pred c
Q psy16316 312 Y 312 (335)
Q Consensus 312 ~ 312 (335)
.
T Consensus 659 ~ 659 (795)
T 4a2l_A 659 L 659 (795)
T ss_dssp G
T ss_pred H
Confidence 3
No 267
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.33 E-value=0.0028 Score=61.79 Aligned_cols=276 Identities=12% Similarity=0.065 Sum_probs=153.5
Q ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeec-------ccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS-------KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 22 ~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
..|.++...++|.+.+ |..++-+..||.++++...-... ....+..+. .+....+.+++. + .+.+||.
T Consensus 163 ~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~--~d~~g~lwigt~-~-Gl~~~d~ 237 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIY--KDTNGNIWIGTS-K-GLALFNA 237 (781)
T ss_dssp CCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEEE--ECTTCCEEEEET-T-EEEEEET
T ss_pred cceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEE--EcCCCCEEEEeC-C-cHheECC
Confidence 4588888888887665 45555688899877643221100 012233333 333333333332 3 6888888
Q ss_pred CCCceEeeecC-------CCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-------e--------cCCcc
Q psy16316 95 HDNKYIRYFPG-------HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-------V--------SGSRP 152 (335)
Q Consensus 95 ~~~~~~~~~~~-------H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-------~--------~~~~~ 152 (335)
.+++....... ....|.++...++|. |.-|+..+-|.++|..+........ . ...+.
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~ 316 (781)
T 3v9f_A 238 NTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASAR 316 (781)
T ss_dssp TTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEE
T ss_pred CCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEE
Confidence 77665432221 135689998887775 5556665668889987655332221 1 11233
Q ss_pred eEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEec-------cCCCccceEEEEccCCCEEEEEeCCCeEEEEECC
Q psy16316 153 IAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA-------AEKECDWTGIKFSADGKYILISTNGSIIRTFDAY 225 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~ 225 (335)
.+..+++|.+. .|+.++-|..++.... ....+... .-....+.++..+++|.+. +|+.++-+..|+..
T Consensus 317 ~i~~D~~g~lW-igt~~~Gl~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~ 391 (781)
T 3v9f_A 317 YIFQDSFNNIW-IGTWGGGINFISNAPP---TFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENG 391 (781)
T ss_dssp EEEECSSCCEE-EEEBSSCEEEECSSCC---SCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETT
T ss_pred EEEEeCCCCEE-EEecCCeEEEeCCCCC---cceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECC
Confidence 45567777765 4555666777876532 12222110 0112346788888888755 45555558888877
Q ss_pred CCeeeeeecc-cccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeC-CCCCCCeEEEEeCCCCcEEEeeec
Q psy16316 226 NGQCLQTLAG-FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD-ADHPSPVQTIQFNPKFNMMASACT 303 (335)
Q Consensus 226 ~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~~~s~~~ 303 (335)
+++.. .+.. .......|.++...+++.+.+ |+.++-|..++..++....... ......|.++...+++.+.+....
T Consensus 392 ~~~~~-~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~ 469 (781)
T 3v9f_A 392 KRVAI-YNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHA 469 (781)
T ss_dssp EEEEE-CC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEETT
T ss_pred CCeEE-EccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEECC
Confidence 54322 1110 011224567788888777655 6666669999987664332211 123467999999988887766555
Q ss_pred eeEEecc
Q psy16316 304 NLAFWIP 310 (335)
Q Consensus 304 ~~~~w~~ 310 (335)
.+..+.+
T Consensus 470 Gl~~~~~ 476 (781)
T 3v9f_A 470 GVFVIDL 476 (781)
T ss_dssp EEEEEES
T ss_pred ceEEEeC
Confidence 5555543
No 268
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.31 E-value=0.0015 Score=63.65 Aligned_cols=277 Identities=11% Similarity=0.009 Sum_probs=157.4
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeec---------ccccceEEEEecCCCeeEEeecCCCCeEE
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS---------KKYGVDLIRFTHAKQAAIHASTKIDDTVR 90 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 90 (335)
....|.++...++|.+- .|+.++-|..++..+.....-... ....|..+.. +....+.+++ .++.+.
T Consensus 311 ~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~--d~~g~lWigt-~~~Gl~ 386 (781)
T 3v9f_A 311 SNASARYIFQDSFNNIW-IGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCD--DGQGKLWIGT-DGGGIN 386 (781)
T ss_dssp SSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEE--CTTSCEEEEE-BSSCEE
T ss_pred CCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEE--cCCCCEEEEe-CCCcEE
Confidence 45679999999999744 456667788888765543221100 1122344433 3333333332 245577
Q ss_pred EEEcCCCceEeee---cCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE---ecCCcceEEECCCCCEEE
Q psy16316 91 YLSLHDNKYIRYF---PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH---VSGSRPIAAFDPEGLIFG 164 (335)
Q Consensus 91 ~~~~~~~~~~~~~---~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 164 (335)
.++..++...... ......|.++...++++ |..|+.++-+..+|..+++...... ....+..+..++++.+.+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi 465 (781)
T 3v9f_A 387 VFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI 465 (781)
T ss_dssp EEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE
T ss_pred EEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE
Confidence 7887665433221 12346789998887776 4457777778899887654322111 012233445566676554
Q ss_pred EEEcCCeEEEEEccCCCCCceeeEEecc---CCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc-ccCC
Q psy16316 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAA---EKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF-LNNK 240 (335)
Q Consensus 165 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~~ 240 (335)
|+. +-+..+|..+.. ...+.... .....+.++..+++|.+.+.+..++ +..||..+++. +.+... .-..
T Consensus 466 -gt~-~Gl~~~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~-~~~~~~~~l~~ 538 (781)
T 3v9f_A 466 -GTH-AGVFVIDLASKK---VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLV-RKFNQYEGFCS 538 (781)
T ss_dssp -EET-TEEEEEESSSSS---CCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEE-EEECTTTTCSC
T ss_pred -EEC-CceEEEeCCCCe---EEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeE-EEccCCCCCCC
Confidence 444 568888876422 22221111 0123567888899998666544344 67788876643 233211 1123
Q ss_pred CCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC--C-CCCCeEEEEeCCCCcEEEeeeceeEEecc
Q psy16316 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA--D-HPSPVQTIQFNPKFNMMASACTNLAFWIP 310 (335)
Q Consensus 241 ~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~--~-h~~~v~~v~~sp~~~~~~s~~~~~~~w~~ 310 (335)
..+.++...++|.+.++.. +|-|..||..++.... +.. + ....|.++...++|.+-+++...+..+.+
T Consensus 539 ~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lW~~t~~Gl~~~~~ 609 (781)
T 3v9f_A 539 NTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQV-FQRKEGLPNTHIRAISEDKNGNIWASTNTGISCYIT 609 (781)
T ss_dssp SCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEE-ECGGGTCSCCCCCEEEECSSSCEEEECSSCEEEEET
T ss_pred CeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEE-ccccCCCCCceEEEEEECCCCCEEEEcCCceEEEEC
Confidence 4567888888888666544 6654889887654222 211 1 22468888899999888877655555543
No 269
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.31 E-value=0.0018 Score=58.52 Aligned_cols=239 Identities=11% Similarity=0.089 Sum_probs=133.9
Q ss_pred ceEEEEecC-CCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCC---Cc-EEEeecCCCC
Q psy16316 66 VDLIRFTHA-KQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD---KT-VRLWDLRSPN 140 (335)
Q Consensus 66 ~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---~~-i~vWd~~~~~ 140 (335)
...+++.++ ....++.+-.. +.|+.+++.++...... +.......++++++++++++-... .. +...+.....
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 445677664 23333333222 78889998777655443 344568899999999966665422 11 3333322221
Q ss_pred ce-eEEEecCCcceEEECC-CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCC
Q psy16316 141 CQ-GIMHVSGSRPIAAFDP-EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGS 217 (335)
Q Consensus 141 ~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~ 217 (335)
.. ...........++++| ++.++++-..++.|..+|..... ....+..... ...-..++++|++++|+++. ..+
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~--~~~~~~~~~~-~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT--LTEEEVMMDT-KGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC--EEEEEEECSC-CSSCEEEEECTTSSEEEEEETTTT
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe--EEEEEeccCC-CCCcccEEEeCCCCEEEEEeCCCC
Confidence 10 1111111223467888 78888777777889998876321 1011111111 11124699999999666654 457
Q ss_pred eEEEEECC--CCee--eeeecccc------------cCCCCceEEEE---------cCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 218 IIRTFDAY--NGQC--LQTLAGFL------------NNKGCPLEASF---------TPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 218 ~i~i~d~~--~~~~--~~~~~~~~------------~~~~~v~~~~~---------sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
.|+.++.. ++.. ...+.+.. ..-..+..+++ .+++.++++-....+|+.++. ++
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 89998764 2321 11222210 01234667999 788888888888889999985 56
Q ss_pred eeEEEeCCCC----------------CCCeEEEEeC-CCCcEEEeeeceeEEecc
Q psy16316 273 FKVCVLDADH----------------PSPVQTIQFN-PKFNMMASACTNLAFWIP 310 (335)
Q Consensus 273 ~~~~~~~~~h----------------~~~v~~v~~s-p~~~~~~s~~~~~~~w~~ 310 (335)
........+. -..-..|++. +++.++++-.++-+|+..
T Consensus 375 ~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 375 RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 4333321110 0124578888 567666665555455443
No 270
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=0.0023 Score=57.76 Aligned_cols=234 Identities=12% Similarity=0.108 Sum_probs=128.2
Q ss_pred ceEEEEecC-CCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeC-CC----cEEEeecCCC
Q psy16316 66 VDLIRFTHA-KQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSY-DK----TVRLWDLRSP 139 (335)
Q Consensus 66 ~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~-D~----~i~vWd~~~~ 139 (335)
...+++.+. ....+++... +.|+.+|+..+....... .......++++++++.|+.+.. ++ .+.+.+. .+
T Consensus 139 P~~lavdp~~~g~Lyv~d~~--~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQ--HPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBT--EEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCEEEECCCCCCeEEEEeCC--CcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 345666652 3333333222 788888988766544443 4456789999999985444433 22 2333443 33
Q ss_pred Cce--eEEEecCCcceEEECC-CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEE-eC
Q psy16316 140 NCQ--GIMHVSGSRPIAAFDP-EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIS-TN 215 (335)
Q Consensus 140 ~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~ 215 (335)
... ..+........++++| ++.++++-..++.|..++.... ....+.... .......++|+|++++|+.+ ..
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~---~~~~~~~~~-~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ---ETTPLFTIQ-DSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT---EEEEEEECS-SSSCCEEEEECTTSSEEEEEETT
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC---cEEEEEEcC-CCCcceeEEEcCCCCEEEEEECC
Confidence 222 1222122234467888 7888888878889999998642 111111111 11234679999999966655 45
Q ss_pred CCeEEEEECCC--Cee--eeeeccccc------------CCCCce-EEEEc--------CCCcEEEEEeCCCcEEEEECC
Q psy16316 216 GSIIRTFDAYN--GQC--LQTLAGFLN------------NKGCPL-EASFT--------PDSKYVISGSTDGRIHIWNAE 270 (335)
Q Consensus 216 ~~~i~i~d~~~--~~~--~~~~~~~~~------------~~~~v~-~~~~s--------p~~~~l~tgs~dg~v~iwd~~ 270 (335)
.+.|..++... ++. ...+.+..+ ....+. .++.. +++.++++=....+|+.++.
T Consensus 291 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~- 369 (430)
T 3tc9_A 291 QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP- 369 (430)
T ss_dssp TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-
T ss_pred CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-
Confidence 67888887542 221 112221100 111233 34443 45677777777788999884
Q ss_pred CCeeEEEeCCC---C-------------CCCeEEEEeCCC-CcEEEeeeceeEEe
Q psy16316 271 KGFKVCVLDAD---H-------------PSPVQTIQFNPK-FNMMASACTNLAFW 308 (335)
Q Consensus 271 ~~~~~~~~~~~---h-------------~~~v~~v~~sp~-~~~~~s~~~~~~~w 308 (335)
++........+ . -..=..+++.|+ +.++++-.++-+|.
T Consensus 370 ~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr 424 (430)
T 3tc9_A 370 QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIR 424 (430)
T ss_dssp TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 56433332110 0 013468899994 66666655554444
No 271
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.26 E-value=0.00017 Score=68.90 Aligned_cols=230 Identities=9% Similarity=0.031 Sum_probs=120.8
Q ss_pred EEEEEECCCCCEEEEec-CCCeEEEEEccCCcceeeeecccccc-eEEEEecCCCeeEEeecC-CC-----CeEEEEEcC
Q psy16316 24 ITSIDYSADGLLLISCS-EDDQIVIYDCELGTNKRTVFSKKYGV-DLIRFTHAKQAAIHASTK-ID-----DTVRYLSLH 95 (335)
Q Consensus 24 V~~v~~s~~g~~lasgs-~Dg~i~lwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~d-----~~i~~~~~~ 95 (335)
..++.+..+|++++.|| .+..+.+||..+.+-...-.-..... ..+...+++ .+++.++ .+ ..+.+||..
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg--~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG--RVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS--CEEEECCCCCSSSCCCCEEEEETT
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCC--eEEEEeCcccCCcccccceEeCCC
Confidence 34567789999999998 45689999998764332111111111 122222232 2333343 33 578999998
Q ss_pred CCceEee-----ecCCCCCeEEEEECCCCCEEEEeeCC---------CcEEEeecCCCCceeEEEecC----------Cc
Q psy16316 96 DNKYIRY-----FPGHTKKVNSLCLSPIDDTFISGSYD---------KTVRLWDLRSPNCQGIMHVSG----------SR 151 (335)
Q Consensus 96 ~~~~~~~-----~~~H~~~V~~~~~~~~~~~l~s~s~D---------~~i~vWd~~~~~~~~~~~~~~----------~~ 151 (335)
+++-... ....... ....+..++..++.|+.| ..+..||..+........... ..
T Consensus 323 t~~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG 401 (656)
T ss_dssp TTEEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred CCcceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence 7654332 0000000 001122344444555444 456788887765432221110 11
Q ss_pred ceEEE-CCCCCEEEEEEcCC-----------eEEEEEccCCCCCceeeEE-eccCCCccceEEEEccCCCEEEEEeCC--
Q psy16316 152 PIAAF-DPEGLIFGVGVNSD-----------TIKLYDVRSFDKGPFSNFK-FAAEKECDWTGIKFSADGKYILISTNG-- 216 (335)
Q Consensus 152 ~~~~~-~~~~~~~~~~~~d~-----------~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~~-- 216 (335)
..+.+ ..++++++.|+.+. .+.+||..+. ...... ..........++...|+++.++.++.+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~---~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~ 478 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS---PNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRG 478 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC---CEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBC
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC---CeeEEccCCCCCCcccCCeEECCCCCEEEECCcccC
Confidence 12223 24678888887532 5777776542 222221 001111112345677899999988643
Q ss_pred ---------CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeC
Q psy16316 217 ---------SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST 260 (335)
Q Consensus 217 ---------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~ 260 (335)
..+.+||..+.+... +............+.+.|+++.++.||.
T Consensus 479 ~~~~~~~~~~~v~~ydp~t~~W~~-~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 479 IPFEDSTPVFTPEIYVPEQDTFYK-QNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CTTCCCSBCCCCEEEEGGGTEEEE-CCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCcCCCCcccceEEEcCCCCceee-cCCCCCccccccHhhcCCCcEEEecCCC
Confidence 458999998766432 2211112222334567799999999995
No 272
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.24 E-value=0.0011 Score=62.33 Aligned_cols=197 Identities=14% Similarity=0.091 Sum_probs=108.4
Q ss_pred CCEEEEecC-CCeEEEEEc-cCCcceeeeeccccc-----------ceEEEEecCCCe--eEEeecCCCCeEEEEEcCCC
Q psy16316 33 GLLLISCSE-DDQIVIYDC-ELGTNKRTVFSKKYG-----------VDLIRFTHAKQA--AIHASTKIDDTVRYLSLHDN 97 (335)
Q Consensus 33 g~~lasgs~-Dg~i~lwd~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~ 97 (335)
+..+..++. ++.|.-+|. ++|+.+......... ...++..+.... ..+..+..|+.+.-+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 445556666 899999999 899887665332110 011233212221 11223345888999999999
Q ss_pred ceEeeecCCC--C--CeEE-EEECCCCCEEEEee------CCCcEEEeecCCCCceeEEEecCCc---------------
Q psy16316 98 KYIRYFPGHT--K--KVNS-LCLSPIDDTFISGS------YDKTVRLWDLRSPNCQGIMHVSGSR--------------- 151 (335)
Q Consensus 98 ~~~~~~~~H~--~--~V~~-~~~~~~~~~l~s~s------~D~~i~vWd~~~~~~~~~~~~~~~~--------------- 151 (335)
+.+-...... . .+.+ -.+ .++ .++.++ .++.|+-+|.++++..-........
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 8775443211 0 1211 111 133 455554 3899999999999876555432211
Q ss_pred ------------------------ceEEECCCCCEEEEEEcC----------------CeEEEEEccCCCCCceeeEEec
Q psy16316 152 ------------------------PIAAFDPEGLIFGVGVNS----------------DTIKLYDVRSFDKGPFSNFKFA 191 (335)
Q Consensus 152 ------------------------~~~~~~~~~~~~~~~~~d----------------~~v~iwd~~~~~~~~~~~~~~~ 191 (335)
...++++...++..+..+ ..|.-+|..+.+. .-.++..
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~--~W~~q~~ 297 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEA--KFGYQKT 297 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCE--EEEEESS
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCce--eeEeecC
Confidence 123455566666665543 3788888876432 1112111
Q ss_pred cCC------CccceEEEEc-cCC---CEEEEEeCCCeEEEEECCCCeeeeee
Q psy16316 192 AEK------ECDWTGIKFS-ADG---KYILISTNGSIIRTFDAYNGQCLQTL 233 (335)
Q Consensus 192 ~~~------~~~~~~~~~s-~~~---~~l~~~~~~~~i~i~d~~~~~~~~~~ 233 (335)
... .....-+... .+| ..++.++.++.++++|..+|+.+...
T Consensus 298 ~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (599)
T ss_dssp TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence 100 0000111222 467 46777889999999999999876544
No 273
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.23 E-value=0.0026 Score=56.86 Aligned_cols=228 Identities=13% Similarity=0.108 Sum_probs=135.0
Q ss_pred CCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC----ceEeeecCCCCCeEEEEECC
Q psy16316 42 DDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN----KYIRYFPGHTKKVNSLCLSP 117 (335)
Q Consensus 42 Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~----~~~~~~~~H~~~V~~~~~~~ 117 (335)
...|+..|++...... +......+..++|.+.....+.+ ....+.|..+++... .....+.........+++.+
T Consensus 91 ~~~I~~i~l~~~~~~~-~~~~~~~~~~l~~d~~~~~lyws-D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~ 168 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTS-LIPNLRNVVALDTEVASNRIYWS-DLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 168 (400)
T ss_dssp TTEEEEECTTSCSCEE-EECSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEET
T ss_pred cceeEEEccCCcceeE-eccccCcceEEeeeeccCceEEE-ecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEe
Confidence 3688888887654433 22333456677887755544443 334677888887652 22333333445678899987
Q ss_pred -CCCEEEEeeCCCcEEEeecCCCCceeEEEecC-CcceEEECCC-CCEEEEEEc-CCeEEEEEccCCCCCceeeEEeccC
Q psy16316 118 -IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG-SRPIAAFDPE-GLIFGVGVN-SDTIKLYDVRSFDKGPFSNFKFAAE 193 (335)
Q Consensus 118 -~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~ 193 (335)
.+++.++-...+.|.+.|+............. ....++++|. +.++.+-.. .+.|...++.... ...+ ...
T Consensus 169 ~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~---~~~~--~~~ 243 (400)
T 3p5b_L 169 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSL--VTE 243 (400)
T ss_dssp TTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS---CEEE--ECS
T ss_pred cCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc---cEEE--EEC
Confidence 45667777778899999987654433332221 1234678874 455555433 3678888775421 1111 111
Q ss_pred CCccceEEEEccCCCEEEEEeC-CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 194 KECDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 194 ~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
.-...++++++|++..|..+.. ...|..+|+..... +.+.........+..+++. .+.++++-...+.|..+|..++
T Consensus 244 ~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 244 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 1123478999998888877654 56899999865432 3332211122345677773 4467777777888999997777
Q ss_pred eeEEEe
Q psy16316 273 FKVCVL 278 (335)
Q Consensus 273 ~~~~~~ 278 (335)
.....+
T Consensus 322 ~~~~~i 327 (400)
T 3p5b_L 322 SDVNLL 327 (400)
T ss_dssp CCCEEE
T ss_pred CceEEE
Confidence 554444
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.19 E-value=0.0024 Score=55.00 Aligned_cols=227 Identities=13% Similarity=0.098 Sum_probs=132.0
Q ss_pred CeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC----CceEeeecCCCCCeEEEEECCC
Q psy16316 43 DQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD----NKYIRYFPGHTKKVNSLCLSPI 118 (335)
Q Consensus 43 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~----~~~~~~~~~H~~~V~~~~~~~~ 118 (335)
..|+..|+++......+ ........++|.+.....+. +....+.|..+++.. ......+.........+++.+.
T Consensus 10 ~~I~~i~~~~~~~~~~~-~~~~~p~g~~~d~~~~~ly~-~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYW-SDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp SSEEEEETTSCCCEEEE-CSCSSEEEEEEETTTTEEEE-EETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CeEEEEECCCcceEehh-cCCCceEEEEEEeCCCEEEE-EECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 46888888776544332 22334566777765544444 334567888888876 2222233333345678888864
Q ss_pred -CCEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECCC-CCEEEEEEcC-CeEEEEEccCCCCCceeeEEeccCC
Q psy16316 119 -DDTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPE-GLIFGVGVNS-DTIKLYDVRSFDKGPFSNFKFAAEK 194 (335)
Q Consensus 119 -~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~ 194 (335)
+++.++-...+.|.+.|+............ .....++++|. +.++.+.... +.|..+++... ....+. ...
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~---~~~~~~--~~~ 162 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIYSLV--TEN 162 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEEEEE--CSS
T ss_pred CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC---CeEEEE--ECC
Confidence 456677677899999998754433333211 22234678874 4555555443 67888877531 111111 111
Q ss_pred CccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCe
Q psy16316 195 ECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGF 273 (335)
Q Consensus 195 ~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~ 273 (335)
-...++++++|++..|..+. ..+.|..+|.... ..+.+.........+..+++. .+.++++-...++|..++..++.
T Consensus 163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 22347899999888777665 4568999998743 223332211122346678885 46677777778899999987665
Q ss_pred eEEEe
Q psy16316 274 KVCVL 278 (335)
Q Consensus 274 ~~~~~ 278 (335)
....+
T Consensus 241 ~~~~i 245 (316)
T 1ijq_A 241 DVNLL 245 (316)
T ss_dssp CCEEE
T ss_pred ceEEE
Confidence 44443
No 275
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.11 E-value=0.0012 Score=63.99 Aligned_cols=115 Identities=11% Similarity=0.020 Sum_probs=73.7
Q ss_pred cEEEEEEC-CCCCEEEEe-----cCCCeEEEEEccCC-cceeeeecccccceEEEEecCCCeeEEeecCCC---CeEEEE
Q psy16316 23 KITSIDYS-ADGLLLISC-----SEDDQIVIYDCELG-TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKID---DTVRYL 92 (335)
Q Consensus 23 ~V~~v~~s-~~g~~lasg-----s~Dg~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~i~~~ 92 (335)
.+....|| |||++||-+ +...+|+++|++++ +...... ......++|++++...++...... ..|.++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~--~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV--SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE--EEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc--cCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 67889999 999988733 23346999999988 6322111 112456789888766555432111 357778
Q ss_pred EcCCCce--Eeeec-CCCCCeEEEEECCCCCEEEEee---CCCcEEEeecCCC
Q psy16316 93 SLHDNKY--IRYFP-GHTKKVNSLCLSPIDDTFISGS---YDKTVRLWDLRSP 139 (335)
Q Consensus 93 ~~~~~~~--~~~~~-~H~~~V~~~~~~~~~~~l~s~s---~D~~i~vWd~~~~ 139 (335)
++.++.. ...+. .+.....++.|+|++++|+..+ ....|.++|+.++
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 8876542 23333 2334567889999999876654 3456888898765
No 276
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.08 E-value=0.0056 Score=62.08 Aligned_cols=282 Identities=12% Similarity=0.081 Sum_probs=143.8
Q ss_pred CccEEEEEECCC------CCEEEEecC-CCeEEEEEccCCcceeeeec-ccccceEEEEecCCCeeEEeecCCCCeEEEE
Q psy16316 21 TDKITSIDYSAD------GLLLISCSE-DDQIVIYDCELGTNKRTVFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92 (335)
Q Consensus 21 ~~~V~~v~~s~~------g~~lasgs~-Dg~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 92 (335)
.+.|.|+++.|. +.++|.|.+ |++++|+++...+......- .......+.+........+..+-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 567999999864 368999997 99999999986544322111 1112233333222233444455567776555
Q ss_pred EcC--CCceEe---eecCCCCCeEEEEECCCCC-EEEEeeCCCcEEEeecCCCCceeEEEec--CCcceEEECCCC--CE
Q psy16316 93 SLH--DNKYIR---YFPGHTKKVNSLCLSPIDD-TFISGSYDKTVRLWDLRSPNCQGIMHVS--GSRPIAAFDPEG--LI 162 (335)
Q Consensus 93 ~~~--~~~~~~---~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~~--~~~~~~~~~~~~--~~ 162 (335)
.++ ++.... .+-| ..++.=..+...+. .++.+| |.-.-++--+ ++. ...... .......|+... .-
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l-~~s~l~~~~v~~~~~F~se~~~~g 708 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKL-VFSNVNLKEVNYMCPLNSDGYPDS 708 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSE-EEEEBSSSCCCEEEEECCSSSTTE
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-Cce-EEeccChHHhceEeccCcccCCCc
Confidence 543 333321 2333 33443333333332 233333 3333333222 121 111111 122334454321 22
Q ss_pred EEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC--------------------------
Q psy16316 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-------------------------- 216 (335)
Q Consensus 163 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-------------------------- 216 (335)
++ +.+++.++|..+......+...+.. ......++++|+.+.+++.+.+
T Consensus 709 ~v-~~~~~~LrI~~i~~~~~~~~~~ipL----~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1158)
T 3ei3_A 709 LA-LANNSTLTIGTIDEIQKLHIRTVPL----YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSV 783 (1158)
T ss_dssp EE-EECSSCEEEEEECCSSSEEEEEEEC----SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEE
T ss_pred EE-EEcCCceEEEEecccCCeeEEEEeC----CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcc
Confidence 33 3345678888876543222222211 1234567777776655443311
Q ss_pred -----------------------CeEEEEECCCCeeeeeecccccC-CCCceEEEEcCC-CcEEEEEe----------CC
Q psy16316 217 -----------------------SIIRTFDAYNGQCLQTLAGFLNN-KGCPLEASFTPD-SKYVISGS----------TD 261 (335)
Q Consensus 217 -----------------------~~i~i~d~~~~~~~~~~~~~~~~-~~~v~~~~~sp~-~~~l~tgs----------~d 261 (335)
..|+++|..+.+.+..+.-..+. ..++..+.|..+ ..+|+.|. ..
T Consensus 784 ~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~ 863 (1158)
T 3ei3_A 784 SSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQ 863 (1158)
T ss_dssp CCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCC
T ss_pred cccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCc
Confidence 23677777776655444211111 112223344433 46888887 35
Q ss_pred CcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeeeceeEEecccc
Q psy16316 262 GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFWIPTY 312 (335)
Q Consensus 262 g~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~~~~w~~~~ 312 (335)
|+|++|++.+++..........++|++++=- +|.++|+.+..+++|.+..
T Consensus 864 Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~ig~~l~vy~l~~ 913 (1158)
T 3ei3_A 864 GRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASINSTVRLYEWTT 913 (1158)
T ss_dssp EEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEETTEEEEEEECT
T ss_pred eEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEcCCEEEEEECCC
Confidence 8899999875543333333346788887733 4677777778899997753
No 277
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.05 E-value=0.0037 Score=51.93 Aligned_cols=205 Identities=11% Similarity=0.126 Sum_probs=124.5
Q ss_pred cccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeec-CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCC
Q psy16316 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFP-GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP 139 (335)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~ 139 (335)
+....++.+++.++....+++.. .++.|...|.. ++.++.+. +-......+++.+++.++++.-.++.+.++++...
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d-~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTIN-KPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPN 101 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEE-TTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred CcccCcceeEEeCCCCEEEEEEC-CCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence 34456888999887655444444 37788888887 77777763 22356788899888887777667788999988665
Q ss_pred Cce---eEEEec-------CCcceEEECCCCCEEEEEEcCCeEEEEEccCCC-CCceeeEEe----ccCCCccceEEEEc
Q psy16316 140 NCQ---GIMHVS-------GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD-KGPFSNFKF----AAEKECDWTGIKFS 204 (335)
Q Consensus 140 ~~~---~~~~~~-------~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~~~~~~~----~~~~~~~~~~~~~s 204 (335)
... ...... .....++++|.+..+.++.......+|.+.... ......... .........+++++
T Consensus 102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d 181 (255)
T 3qqz_A 102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFN 181 (255)
T ss_dssp CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEc
Confidence 432 112111 112467888888666566555555566554211 111111111 01122346789999
Q ss_pred cCCCEE-EEEeCCCeEEEEECCCCeeeeeeccc---c---cCCCCceEEEEcCCCcEEEEEeCCCcEEEEEC
Q psy16316 205 ADGKYI-LISTNGSIIRTFDAYNGQCLQTLAGF---L---NNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269 (335)
Q Consensus 205 ~~~~~l-~~~~~~~~i~i~d~~~~~~~~~~~~~---~---~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~ 269 (335)
|....+ +.+..++.+..+|.. ++.+..+.-. . .....+-.++|.|+|+++++ ++-..++.+..
T Consensus 182 p~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 182 QQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp TTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred CCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 976554 456667788889865 4444433211 1 11234668999999986666 67667777754
No 278
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.00 E-value=0.0011 Score=64.33 Aligned_cols=201 Identities=12% Similarity=0.098 Sum_probs=105.8
Q ss_pred CCCC-CeEEEEEC-CCCCEEEEeeC-C----CcEEEeecCCC-CceeEEEecCCcceEEECCCCCEEEEEEcC-----Ce
Q psy16316 105 GHTK-KVNSLCLS-PIDDTFISGSY-D----KTVRLWDLRSP-NCQGIMHVSGSRPIAAFDPEGLIFGVGVNS-----DT 171 (335)
Q Consensus 105 ~H~~-~V~~~~~~-~~~~~l~s~s~-D----~~i~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~ 171 (335)
+|.- .+...+|+ |+|++|+-+.. + .+|+++|+.++ ..... ..........|+|+++.++....+ ..
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~ 248 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENK 248 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCE
Confidence 4443 67889999 99997774432 2 35999999987 53211 011112346799999877766554 25
Q ss_pred EEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC---CCeEEEEECCCCe-ee--eeecccccCCCCceE
Q psy16316 172 IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN---GSIIRTFDAYNGQ-CL--QTLAGFLNNKGCPLE 245 (335)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---~~~i~i~d~~~~~-~~--~~~~~~~~~~~~v~~ 245 (335)
|..+++.+........+. .....-...+.+||||++|+.... ...|+++|+.++. .. +.+... .......
T Consensus 249 v~~~~lgt~~~~~~lv~~--~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~s 324 (751)
T 2xe4_A 249 VWRHVMGKLQSEDVCLYE--EHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR--EKGVRYD 324 (751)
T ss_dssp EEEEETTSCGGGCEEEEE--CCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC--CTTCCEE
T ss_pred EEEEECCCCchhcEEEEe--cCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC--CCCceEE
Confidence 777776542211111111 111122356889999999887653 3468889988752 12 333221 1222333
Q ss_pred EEEcCCCcEEEEEeCC----CcEEEEECCCC-eeEE-EeCCCCCCCeEEEEeCCCCcEEEeee--ceeEEeccc
Q psy16316 246 ASFTPDSKYVISGSTD----GRIHIWNAEKG-FKVC-VLDADHPSPVQTIQFNPKFNMMASAC--TNLAFWIPT 311 (335)
Q Consensus 246 ~~~sp~~~~l~tgs~d----g~v~iwd~~~~-~~~~-~~~~~h~~~v~~v~~sp~~~~~~s~~--~~~~~w~~~ 311 (335)
+.|+.++.+++....+ ..|..++..++ .... .+.......+..+++.. +.++++.. +..++|..+
T Consensus 325 ~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 325 VQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRS-NYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp EEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECS-SEEEEEEEETTEEEEEEEE
T ss_pred EeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEEC-CEEEEEEEeCCEEEEEEEe
Confidence 4444444445554443 35677777642 2111 23221111345555553 23334432 445666544
No 279
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.94 E-value=0.0094 Score=52.86 Aligned_cols=207 Identities=8% Similarity=0.038 Sum_probs=122.1
Q ss_pred CccEEEEEECCCC-CEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCce
Q psy16316 21 TDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY 99 (335)
Q Consensus 21 ~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 99 (335)
...+..++|++.+ .++.+-...+.|..++.+.+.....+.........+++.+.....+.+ ....+.|.+.+++....
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~-d~~~~~I~~~~~dg~~~ 193 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWT-DSGTSRIEVANLDGAHR 193 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEE-ETTTTEEEECBTTSCSC
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEE-cCCCCeEEEEeCCCCce
Confidence 3447789999755 455566678899999987664333222222344556666544444333 33466788888765543
Q ss_pred EeeecCCCCCeEEEEECCCCC-EEEEeeCC-CcEEEeecCCCCceeEEEecCC-cceEEECCC-CCEEEEEEcCCeEEEE
Q psy16316 100 IRYFPGHTKKVNSLCLSPIDD-TFISGSYD-KTVRLWDLRSPNCQGIMHVSGS-RPIAAFDPE-GLIFGVGVNSDTIKLY 175 (335)
Q Consensus 100 ~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D-~~i~vWd~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~d~~v~iw 175 (335)
...+.........+++.|.+. ++++-... +.|...|+.............. -..++++|+ +.++.+-+..+.|..+
T Consensus 194 ~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~ 273 (386)
T 3v65_B 194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 273 (386)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence 334444446678999998655 45555445 7888888765433222221111 234678864 5566666677889999
Q ss_pred EccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec
Q psy16316 176 DVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234 (335)
Q Consensus 176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 234 (335)
|+.... ...+ .........++++ ..+...++....+.|..++..+++..+.+.
T Consensus 274 d~dG~~---~~~~--~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 274 NLDGSH---RKAV--ISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp CTTSCS---CEEE--ECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCCCe---eEEE--EECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 876421 1111 1111123356777 344455555567789889877777666654
No 280
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=0.0047 Score=56.40 Aligned_cols=247 Identities=13% Similarity=0.121 Sum_probs=139.0
Q ss_pred cEEEEEECCC--CCEEEEecCCCeEEEEEccCCcceeeeeccc---ccceEEEE-------ecCCCeeEEeecCC-----
Q psy16316 23 KITSIDYSAD--GLLLISCSEDDQIVIYDCELGTNKRTVFSKK---YGVDLIRF-------THAKQAAIHASTKI----- 85 (335)
Q Consensus 23 ~V~~v~~s~~--g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~----- 85 (335)
....|+|+|. +.++++-...+.|++.|.+.+.......... .....++| .++....+++....
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3678999983 4455555555778888987765543322211 23667888 77666444443322
Q ss_pred CCeEEEEEcCC-CceE-----eeecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecC-------CCCc----------
Q psy16316 86 DDTVRYLSLHD-NKYI-----RYFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLR-------SPNC---------- 141 (335)
Q Consensus 86 d~~i~~~~~~~-~~~~-----~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~-------~~~~---------- 141 (335)
...+.+++... +... +.+... .....++++|+ +.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 11244554333 2221 222211 23457788995 5666777788899999987 4543
Q ss_pred -e-eEEEecC-C-cceEEECCCCC-EEEEEEcCCeEEEEEccCCCCCce---eeEEec-c-----C-----CCc-cce-E
Q psy16316 142 -Q-GIMHVSG-S-RPIAAFDPEGL-IFGVGVNSDTIKLYDVRSFDKGPF---SNFKFA-A-----E-----KEC-DWT-G 200 (335)
Q Consensus 142 -~-~~~~~~~-~-~~~~~~~~~~~-~~~~~~~d~~v~iwd~~~~~~~~~---~~~~~~-~-----~-----~~~-~~~-~ 200 (335)
. .+..... . ...++++|+|+ ++++-+..+.|+.++...... .. ..+.-. . + ... ... .
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~-~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK-EFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT-EECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc-eecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 1 1222221 1 23578999998 466666778898877543111 00 111100 0 0 000 112 3
Q ss_pred EEEc-------cCCCEEEEEeCCCeEEEEECCCCeeeeeeccccc---------------------CCCCceEEEEcCC-
Q psy16316 201 IKFS-------ADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLN---------------------NKGCPLEASFTPD- 251 (335)
Q Consensus 201 ~~~s-------~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~---------------------~~~~v~~~~~sp~- 251 (335)
+... +++.+.++-..+..|+.++ .++. +.++.+... .-..+..++++++
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~ 455 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK 455 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence 5554 4566666666678899998 4553 445543210 1134667888886
Q ss_pred CcEEEEEeCCCcEEEEECCCCe
Q psy16316 252 SKYVISGSTDGRIHIWNAEKGF 273 (335)
Q Consensus 252 ~~~l~tgs~dg~v~iwd~~~~~ 273 (335)
+.++++=..+.+|+.++++...
T Consensus 456 g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 456 EMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp TEEEEEETTTTEEEEEEECCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCc
Confidence 7777777777888888876543
No 281
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.92 E-value=0.009 Score=52.19 Aligned_cols=206 Identities=8% Similarity=0.038 Sum_probs=121.8
Q ss_pred ccEEEEEECCCCC-EEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE
Q psy16316 22 DKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI 100 (335)
Q Consensus 22 ~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 100 (335)
..+..++|++.+. ++.+-...+.|..++.+.+.....+.........+++.+.....+. +....+.|.+.+++.....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~-~d~~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW-TDSGTSRIEVANLDGAHRK 151 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE-EETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEE-EcCCCCeEEEEcCCCCceE
Confidence 3467899997554 5556567889999998766533332222234556677654444433 3344678888888765443
Q ss_pred eeecCCCCCeEEEEECCCC-CEEEEeeCC-CcEEEeecCCCCceeEEEecCC-cceEEECCC-CCEEEEEEcCCeEEEEE
Q psy16316 101 RYFPGHTKKVNSLCLSPID-DTFISGSYD-KTVRLWDLRSPNCQGIMHVSGS-RPIAAFDPE-GLIFGVGVNSDTIKLYD 176 (335)
Q Consensus 101 ~~~~~H~~~V~~~~~~~~~-~~l~s~s~D-~~i~vWd~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~d~~v~iwd 176 (335)
..+.........+++.|.+ .++++-... +.|...++.............. -..++++|+ +.++.+-+..+.|..+|
T Consensus 152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~ 231 (349)
T 3v64_C 152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 231 (349)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence 3444444567899999855 455665555 7888888765332221111111 234678874 55666666678899999
Q ss_pred ccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec
Q psy16316 177 VRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 234 (335)
+..... ..+. ........++++ ..+...++-...+.|..++..+++..+.+.
T Consensus 232 ~dG~~~---~~~~--~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 232 LDGSHR---KAVI--SQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTSCSC---EEEE--CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCCce---EEEE--eCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 864211 1111 111123356777 344444455566788888877776665554
No 282
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.92 E-value=0.0068 Score=56.90 Aligned_cols=164 Identities=11% Similarity=0.052 Sum_probs=95.3
Q ss_pred CeEEEEEcCCCceEeeec--CCC--------CCeEEEEEC-CCCC---EEEEeeCCCcEEEeecCCCCceeEEEecCC--
Q psy16316 87 DTVRYLSLHDNKYIRYFP--GHT--------KKVNSLCLS-PIDD---TFISGSYDKTVRLWDLRSPNCQGIMHVSGS-- 150 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~--~H~--------~~V~~~~~~-~~~~---~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~-- 150 (335)
+.+.-+|+.+++.+-.++ .|. .++. +... .+|+ .++.++.+|.+.++|..+++.+........
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 578899999998876654 232 1222 1221 3563 788899999999999998876543322110
Q ss_pred --------------------------------------------cceEEECCCCCEEEEEE-------------------
Q psy16316 151 --------------------------------------------RPIAAFDPEGLIFGVGV------------------- 167 (335)
Q Consensus 151 --------------------------------------------~~~~~~~~~~~~~~~~~------------------- 167 (335)
...++++|+..++.+..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 01234566544443332
Q ss_pred --------------cCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeee
Q psy16316 168 --------------NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL 233 (335)
Q Consensus 168 --------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 233 (335)
.++.+.-||+.+.+. .-...... ...+-.+...+..++.++.|+.++.||.++|+.+-++
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~--~W~~~~~~----~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKV--VWEHKEHL----PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCE--EEEEEESS----CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCE--EEEecCCC----CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence 246777888766431 11111111 1111122234677888999999999999999988777
Q ss_pred cccccCCCCceEEEEcCCCc-EEEEEe
Q psy16316 234 AGFLNNKGCPLEASFTPDSK-YVISGS 259 (335)
Q Consensus 234 ~~~~~~~~~v~~~~~sp~~~-~l~tgs 259 (335)
......... -+.+..+|+ |+++.+
T Consensus 524 ~~~~g~~a~--P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 524 QTGSGIVSP--PITWEQDGEQYLGVTV 548 (582)
T ss_dssp ECSSCCCSC--CEEEEETTEEEEEEEE
T ss_pred cCCCCcccC--ceEEEECCEEEEEEEc
Confidence 643322222 256667776 444443
No 283
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.90 E-value=0.0093 Score=51.56 Aligned_cols=265 Identities=12% Similarity=0.067 Sum_probs=136.7
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeec----ccccceEEEEecCCCeeEEeecCCCCeEEEEEcC
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS----KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 95 (335)
-...+.+|.|.+++..+|. +.+|.| +...+.++.-..+.. ....+..+.+.+ ...+++ + ..+.+.. ..+
T Consensus 34 ~~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~~-g-~~g~i~~-S~D 106 (327)
T 2xbg_A 34 TTATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWIV-G-EPPIMLH-TTD 106 (327)
T ss_dssp CSSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET--TEEEEE-E-ETTEEEE-ESS
T ss_pred CCCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC--CeEEEE-E-CCCeEEE-ECC
Confidence 3457999999988887774 567765 334444432222211 123456666653 333332 2 2343332 333
Q ss_pred CCceEeeec---CCCCCeEEEEECCCCCEEEEeeCCCcE-EEeecCCCCceeEEEe--cCCcceEEECCCCCEEEEEEcC
Q psy16316 96 DNKYIRYFP---GHTKKVNSLCLSPIDDTFISGSYDKTV-RLWDLRSPNCQGIMHV--SGSRPIAAFDPEGLIFGVGVNS 169 (335)
Q Consensus 96 ~~~~~~~~~---~H~~~V~~~~~~~~~~~l~s~s~D~~i-~vWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d 169 (335)
.++.-+... .+...+..+.+.+++..++.+ .++.| +-.|- ++.-..... ......+.+.+++.+++++...
T Consensus 107 gG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~Dg--G~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G 183 (327)
T 2xbg_A 107 GGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDS--GKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRG 183 (327)
T ss_dssp TTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESST--TSSEEEEECSCCCCEEEEEECTTSCEEEEETTS
T ss_pred CCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCC--CCCCEEeecCCCcceEEEEEcCCCcEEEEECCC
Confidence 333322221 234557788877666655555 45544 44442 221111111 1223345678888888777555
Q ss_pred CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc-ccCCCCceEEEE
Q psy16316 170 DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF-LNNKGCPLEASF 248 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~ 248 (335)
...+..|-. ......... .....+..+.+++++..++++ .++.+++.+...++.-..+... ......+..+++
T Consensus 184 ~~~~S~d~g---G~tW~~~~~--~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~ 257 (327)
T 2xbg_A 184 SFYSTWEPG---QTAWEPHNR--TTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAY 257 (327)
T ss_dssp SEEEEECTT---CSSCEEEEC--CSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEE
T ss_pred cEEEEeCCC---CCceeECCC--CCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEe
Confidence 555544421 112222211 223355778899998866554 5677766543334332222211 111224667889
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCeeEEEeC--CCCCCCeEEEEeCCCCcEEEeee
Q psy16316 249 TPDSKYVISGSTDGRIHIWNAEKGFKVCVLD--ADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 249 sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~--~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
.|++..+++|. ++.| ++....+..-..+. ...+..+.+++|.+++.+++.+.
T Consensus 258 ~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~ 311 (327)
T 2xbg_A 258 RTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQ 311 (327)
T ss_dssp SSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECS
T ss_pred cCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcC
Confidence 98888777765 6666 34444443322232 12346788999987766666654
No 284
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.90 E-value=0.0095 Score=51.64 Aligned_cols=198 Identities=14% Similarity=0.179 Sum_probs=115.9
Q ss_pred CCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEec----CCCe--eEEeecCC--CCeEEEEEcC--CCceEe
Q psy16316 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTH----AKQA--AIHASTKI--DDTVRYLSLH--DNKYIR 101 (335)
Q Consensus 32 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~--d~~i~~~~~~--~~~~~~ 101 (335)
..++++.-.+.+-+.+||+ .|+.+..+.. ..++.+..-+ .+.. ..+++... ++++++|++. ++. +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 4456666677889999999 7777766543 2333333322 1111 34555556 7899999774 333 44
Q ss_pred eecC------CC-CCeEEEEE--CCC-CC-EEEEeeCCCcEEEeecC---CC----CceeEEEecCCcceEEECCCCCEE
Q psy16316 102 YFPG------HT-KKVNSLCL--SPI-DD-TFISGSYDKTVRLWDLR---SP----NCQGIMHVSGSRPIAAFDPEGLIF 163 (335)
Q Consensus 102 ~~~~------H~-~~V~~~~~--~~~-~~-~l~s~s~D~~i~vWd~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~ 163 (335)
.+.. -. ..+..+++ +|. +. +++....++.+..|++. .+ +..+.+........+..++....+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRL 194 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeE
Confidence 4421 11 45556776 674 43 57777888999999983 22 233445555555566777777777
Q ss_pred EEEEcCCeEEEEEccCCCCCceeeEEec--cCCCccceEEEE--ccCCC-EEEEEeC-CCeEEEEECC-CCeeeeee
Q psy16316 164 GVGVNSDTIKLYDVRSFDKGPFSNFKFA--AEKECDWTGIKF--SADGK-YILISTN-GSIIRTFDAY-NGQCLQTL 233 (335)
Q Consensus 164 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~--s~~~~-~l~~~~~-~~~i~i~d~~-~~~~~~~~ 233 (335)
.++-.+.-|-.+|.+............. ......+.+|++ .++++ +|++++. +....+||.. +.+.+..+
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 7887775555555433211111112111 122235677887 56666 7777774 4689999986 55544444
No 285
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.90 E-value=0.009 Score=51.32 Aligned_cols=200 Identities=10% Similarity=0.102 Sum_probs=119.2
Q ss_pred eEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEee-ecC----CCC--CeEEEEE---CCCCCEEEEee----------
Q psy16316 67 DLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRY-FPG----HTK--KVNSLCL---SPIDDTFISGS---------- 126 (335)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~-~~~----H~~--~V~~~~~---~~~~~~l~s~s---------- 126 (335)
...+|... ...+..+....++|..|+...+..... +.+ ... .+..+.+ .|++++++...
T Consensus 16 E~~~wd~~-~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 16 EDTIYDRT-RQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp SCEEEETT-TTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred cCccCcCC-CCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 45566554 334555666789999999876544333 332 111 3578999 57876666433
Q ss_pred ---CCCcEEEeecC---CCCceeEEEecC--------------CcceEEECCCCCEEEEEEcC-CeEEEEEccCCCCCce
Q psy16316 127 ---YDKTVRLWDLR---SPNCQGIMHVSG--------------SRPIAAFDPEGLIFGVGVNS-DTIKLYDVRSFDKGPF 185 (335)
Q Consensus 127 ---~D~~i~vWd~~---~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~d-~~v~iwd~~~~~~~~~ 185 (335)
.+..|..+|+. +++......+.. ...-++.+++|+.+++++.. +.|..++.... ..
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~---~~ 171 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK---TV 171 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC---CE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC---EE
Confidence 26889999999 776654443221 12346889999999999888 87777665431 12
Q ss_pred eeEEec---cCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCee--eeeec--ccccCCCCceEE-EEcCCCcE-EE
Q psy16316 186 SNFKFA---AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC--LQTLA--GFLNNKGCPLEA-SFTPDSKY-VI 256 (335)
Q Consensus 186 ~~~~~~---~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~--~~~~~~~~v~~~-~~sp~~~~-l~ 256 (335)
..+... .......++++++|++..|++...++.+..+|+.+... +. +. +....-..+-.+ .--.+|+. |+
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vllV 250 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESVLV 250 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEEEE
Confidence 212111 11123457999999999999987789999999884322 11 11 111111112232 33346776 55
Q ss_pred EEeCCCcEEEEECCC
Q psy16316 257 SGSTDGRIHIWNAEK 271 (335)
Q Consensus 257 tgs~dg~v~iwd~~~ 271 (335)
+.+..+.+.+.+...
T Consensus 251 ~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 251 GARAPYAISFRSWDN 265 (334)
T ss_dssp EEETTEEEEEECSST
T ss_pred EcCCCCEEEEECCCC
Confidence 555566555555443
No 286
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.90 E-value=0.0038 Score=53.65 Aligned_cols=165 Identities=13% Similarity=0.168 Sum_probs=102.5
Q ss_pred CCeEEEEECCCCCEEEEee-CCCcEEEeecCCCCceeEEEecCC---------cceEEE---CCCCCEEEEEEc------
Q psy16316 108 KKVNSLCLSPIDDTFISGS-YDKTVRLWDLRSPNCQGIMHVSGS---------RPIAAF---DPEGLIFGVGVN------ 168 (335)
Q Consensus 108 ~~V~~~~~~~~~~~l~s~s-~D~~i~vWd~~~~~~~~~~~~~~~---------~~~~~~---~~~~~~~~~~~~------ 168 (335)
.--.++.|++....+.-++ ..++|..||...+....+ ...+. ..-+.+ +|+++++++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3345889988655555554 899999999875543333 22221 124567 688888776432
Q ss_pred -------CCeEEEEEcc---CCCCCceeeEEecc-C-------CCccceEEEEccCCCEEEEEeCC-CeEEEEECCCCee
Q psy16316 169 -------SDTIKLYDVR---SFDKGPFSNFKFAA-E-------KECDWTGIKFSADGKYILISTNG-SIIRTFDAYNGQC 229 (335)
Q Consensus 169 -------d~~v~iwd~~---~~~~~~~~~~~~~~-~-------~~~~~~~~~~s~~~~~l~~~~~~-~~i~i~d~~~~~~ 229 (335)
+..+..+|+. +.+......+.... + .....+.++.+++|+.-++.+.. +.|..++.....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~- 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT- 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-
Confidence 5789999987 43221111111001 0 11235789999999988888888 888888776442
Q ss_pred eeeec-cc--ccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCee
Q psy16316 230 LQTLA-GF--LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK 274 (335)
Q Consensus 230 ~~~~~-~~--~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~ 274 (335)
...+. .. .........++++|+|+.|++...+|.+..+|+.+...
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~ 218 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYA 218 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSC
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcc
Confidence 22221 11 11112245799999999888777799999999875433
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.85 E-value=0.026 Score=54.90 Aligned_cols=243 Identities=13% Similarity=0.115 Sum_probs=136.1
Q ss_pred EEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCC----ceE
Q psy16316 25 TSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN----KYI 100 (335)
Q Consensus 25 ~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~----~~~ 100 (335)
++....+...++++ ....|+..++....... +......+..+++.+.....+.+ ....+.|+.+++... ...
T Consensus 388 ~C~~~~~~p~Ll~a--n~~~Ir~i~l~~~~~~~-l~~~~~~~~gl~~d~~~~~lY~s-D~~~~~I~~~~l~g~~~~~~~~ 463 (791)
T 3m0c_C 388 ACKAVGSIAYLFFT--NRHEVRKMTLDRSEYTS-LIPNLRNVVALDTEVASNRIYWS-DLSQRMICSTQLDRAHGVSSYD 463 (791)
T ss_dssp CCEETTSCCEEEEE--CBSSEEEECTTSCCCEE-EECSCSSEEEEEEETTTTEEEEE-ETTTTEEEEEEC--------CE
T ss_pred eeeecccccccccc--cccceeEeeccCCccee-eecCCCceEEEeecccCCeeEEe-eccceeEEEEeccCCCCCccee
Confidence 34444443333333 33567777776554332 22233345567776654444443 334677888887653 223
Q ss_pred eeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCCCCceeEEEecC-CcceEEECCC-CCEEEEEEcC-CeEEEEE
Q psy16316 101 RYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMHVSG-SRPIAAFDPE-GLIFGVGVNS-DTIKLYD 176 (335)
Q Consensus 101 ~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~d-~~v~iwd 176 (335)
..+.........|++.+.+ ++.++-...+.|.+.|+.......++.... ....++++|. +.++.+-... +.|...+
T Consensus 464 ~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~ 543 (791)
T 3m0c_C 464 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 543 (791)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEe
Confidence 3344344566789998766 566777788999999987654333332221 2235678875 5555555333 6788887
Q ss_pred ccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEE
Q psy16316 177 VRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYV 255 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 255 (335)
+.... ...+ ....-...++|++++.+..|+.+.. ...|..+++........+.. ......+..+++.. +.++
T Consensus 544 ~dG~~---~~~l--v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~-~~~l~~P~glav~~-~~lY 616 (791)
T 3m0c_C 544 LNGVD---IYSL--VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-EKRLAHPFSLAVFE-DKVF 616 (791)
T ss_dssp TTSCC---EEEE--ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC-TTTTSSEEEEEEET-TEEE
T ss_pred cCCCc---eEEE--EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC-CCccCCCCEEEEeC-CEEE
Confidence 75321 1111 1111223478999988887777654 46799999865433322221 11122355677643 3566
Q ss_pred EEEeCCCcEEEEECCCCeeEEEe
Q psy16316 256 ISGSTDGRIHIWNAEKGFKVCVL 278 (335)
Q Consensus 256 ~tgs~dg~v~iwd~~~~~~~~~~ 278 (335)
++-...+.|...|..++.....+
T Consensus 617 wtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 617 WTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEETTTTEEEEEETTTCCCCEEE
T ss_pred EEECCCCEEEEEeCCCCcceEEe
Confidence 67667788988887766543333
No 288
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.82 E-value=0.00037 Score=67.03 Aligned_cols=229 Identities=14% Similarity=0.101 Sum_probs=126.4
Q ss_pred CCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC----CceEeeecCCCCCeEEEEECC
Q psy16316 42 DDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD----NKYIRYFPGHTKKVNSLCLSP 117 (335)
Q Consensus 42 Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~----~~~~~~~~~H~~~V~~~~~~~ 117 (335)
...|+..++........+. ....+..++|.+.... ++.+....+.|+.+++.. ......+.........+++.+
T Consensus 385 ~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TTC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred ccceEEEeCCCCcceeeec-cCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 3577888877654433222 2233455667655444 333434467788888765 222222222223456788875
Q ss_pred C-CCEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECCC-CCEEEEEEcC-CeEEEEEccCCCCCceeeEEeccC
Q psy16316 118 I-DDTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPE-GLIFGVGVNS-DTIKLYDVRSFDKGPFSNFKFAAE 193 (335)
Q Consensus 118 ~-~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~d-~~v~iwd~~~~~~~~~~~~~~~~~ 193 (335)
. ++++++-...+.|.+.|+.......++... .....++++|. +.++++-... +.|..+++..... ..+ ...
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~---~~l--~~~ 537 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSL--VTE 537 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC---CEE--SCS
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe---eEE--EeC
Confidence 4 556677667889999998765433222211 12234677874 4555544332 6777766643211 111 111
Q ss_pred CCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCC
Q psy16316 194 KECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272 (335)
Q Consensus 194 ~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~ 272 (335)
.-...++|+++|++..|+.+. ..+.|..+++.... .+.+.........+..+++..+ .++++....++|..++..++
T Consensus 538 ~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 538 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 112236799999876666554 45689999986432 2233221112233556777654 56677777889999998888
Q ss_pred eeEEEeC
Q psy16316 273 FKVCVLD 279 (335)
Q Consensus 273 ~~~~~~~ 279 (335)
.....+.
T Consensus 616 ~~~~~i~ 622 (699)
T 1n7d_A 616 SDVNLLA 622 (699)
T ss_dssp EEEECCC
T ss_pred CceEEee
Confidence 7666553
No 289
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.72 E-value=0.026 Score=51.47 Aligned_cols=242 Identities=9% Similarity=0.072 Sum_probs=134.2
Q ss_pred EEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCC---CCCeEEEEE-------CCCCCEEEEeeCCC-------c
Q psy16316 68 LIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGH---TKKVNSLCL-------SPIDDTFISGSYDK-------T 130 (335)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H---~~~V~~~~~-------~~~~~~l~s~s~D~-------~ 130 (335)
.+++.|.....++++....+.|++.|++.+........- ......++| +++++.|+.+...+ .
T Consensus 143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~ 222 (496)
T 3kya_A 143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPS 222 (496)
T ss_dssp EEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEE
T ss_pred EEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCce
Confidence 456665322333443333467888888887766554332 235889999 99998555554443 3
Q ss_pred EEEeecCC-CCce-----eEE-EecCCcceEEECC-CCCEEEEEEcCCeEEEEEcc-------CCCC-Cc--------ee
Q psy16316 131 VRLWDLRS-PNCQ-----GIM-HVSGSRPIAAFDP-EGLIFGVGVNSDTIKLYDVR-------SFDK-GP--------FS 186 (335)
Q Consensus 131 i~vWd~~~-~~~~-----~~~-~~~~~~~~~~~~~-~~~~~~~~~~d~~v~iwd~~-------~~~~-~~--------~~ 186 (335)
|.+.+... +... ..+ ...+ ...++++| ++.++++...++.|..+|+. .... .+ ..
T Consensus 223 V~~i~r~~~G~~~~~~~~~~v~~~~~-p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~ 301 (496)
T 3kya_A 223 VYIIKRNADGTFDDRSDIQLIAAYKQ-CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFK 301 (496)
T ss_dssp EEEEECCTTSCCSTTSCEEEEEEESC-CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEE
T ss_pred EEEEecCCCCceeecccceeeccCCC-ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccc
Confidence 66676433 1221 122 1222 23457788 67788888888999999987 3221 00 11
Q ss_pred eEEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEEC--CCCee--eeeeccccc------------CCCCce-EEEE
Q psy16316 187 NFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDA--YNGQC--LQTLAGFLN------------NKGCPL-EASF 248 (335)
Q Consensus 187 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~--~~~~~--~~~~~~~~~------------~~~~v~-~~~~ 248 (335)
.+. ..........++|+|++++|+++. ....|+.++. ..+.. ...+.+..+ .-..+. .++.
T Consensus 302 ~l~-~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~v 380 (496)
T 3kya_A 302 QLF-TIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFV 380 (496)
T ss_dssp EEE-ECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEE
T ss_pred eeE-ecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEE
Confidence 111 111122236799999999766554 5567888654 33321 122322111 112344 3455
Q ss_pred c-------CCCcEEEEEeCCCcEEEEECCCCeeEEEeCC------------CC----------CCCeEEEEeCCC-CcEE
Q psy16316 249 T-------PDSKYVISGSTDGRIHIWNAEKGFKVCVLDA------------DH----------PSPVQTIQFNPK-FNMM 298 (335)
Q Consensus 249 s-------p~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~------------~h----------~~~v~~v~~sp~-~~~~ 298 (335)
. +++.++++=..+.+|+.++ .++........ +. -..=..|++.|+ +.+.
T Consensus 381 d~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~ly 459 (496)
T 3kya_A 381 KNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFY 459 (496)
T ss_dssp ECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEE
T ss_pred ccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEE
Confidence 4 5677777777888999998 45643222211 10 012357899996 7776
Q ss_pred EeeeceeEEecccc
Q psy16316 299 ASACTNLAFWIPTY 312 (335)
Q Consensus 299 ~s~~~~~~~w~~~~ 312 (335)
++-..+-+|+..+.
T Consensus 460 VaD~~N~rIrki~~ 473 (496)
T 3kya_A 460 VHDQVGHTIRTISM 473 (496)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EEeCCCCEEEEEEC
Confidence 66655545544333
No 290
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.66 E-value=0.023 Score=48.92 Aligned_cols=205 Identities=7% Similarity=-0.016 Sum_probs=119.7
Q ss_pred CCeEEEEEcCCCc--eEeeecCCCCCeEEEEECCC-CCEEEEeeCCCcEEEeecCCCCcee-EEEec-CCcceEEECC-C
Q psy16316 86 DDTVRYLSLHDNK--YIRYFPGHTKKVNSLCLSPI-DDTFISGSYDKTVRLWDLRSPNCQG-IMHVS-GSRPIAAFDP-E 159 (335)
Q Consensus 86 d~~i~~~~~~~~~--~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~~~~-~~~~~-~~~~~~~~~~-~ 159 (335)
...|+..+++... ....+. ....+..++|++. +.+.++-...+.|..+++....... +.... .....+++++ .
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 4578888887653 222222 2345668999985 5566777778899999987653222 22211 1223466775 5
Q ss_pred CCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC--CCeEEEEECCCCeeeeeecccc
Q psy16316 160 GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN--GSIIRTFDAYNGQCLQTLAGFL 237 (335)
Q Consensus 160 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--~~~i~i~d~~~~~~~~~~~~~~ 237 (335)
++++.+-...+.|.++++.... ...+. ...-....+++++|.+..|+.+.. .+.|..+++.... .+.+..
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~---~~~l~--~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~-- 162 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSL---RKVLF--WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIIN-- 162 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCS---CEEEE--CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEEC--
T ss_pred CeEEEEECCCCEEEEEECCCCc---EEEEE--eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEE--
Confidence 6677777777899999886421 11111 112223478999998777777663 4678888876432 222211
Q ss_pred cCCCCceEEEEcCCCc-EEEEEeCCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEee
Q psy16316 238 NNKGCPLEASFTPDSK-YVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 238 ~~~~~v~~~~~sp~~~-~l~tgs~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~ 301 (335)
.....+..++++|++. ++++=+..++|+.+|.....+...... ....-..+++..+ .++.+-
T Consensus 163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~-~~~~P~glav~~~-~lywtd 225 (318)
T 3sov_A 163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG-SLPHPFALTLFED-ILYWTD 225 (318)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-CCSCEEEEEEETT-EEEEEE
T ss_pred CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC-CCCCceEEEEeCC-EEEEEe
Confidence 1234578899999655 555556678899999864333333321 1223346666543 344443
No 291
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.60 E-value=0.031 Score=48.85 Aligned_cols=242 Identities=12% Similarity=0.118 Sum_probs=122.4
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee------cccccceEEEEecC---CCeeEEe
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF------SKKYGVDLIRFTHA---KQAAIHA 81 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~ 81 (335)
|++.....+ -.....++|.|+|.++++- .+|.|++++ .++. ..+. ........+++.++ ....+++
T Consensus 21 ~~~~~va~~-l~~P~~ia~~pdG~l~V~e-~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~ 95 (352)
T 2ism_A 21 LRVEEVVGG-LEVPWALAFLPDGGMLIAE-RPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVYAY 95 (352)
T ss_dssp CCEEEEECC-CSCEEEEEECTTSCEEEEE-TTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred cEEEEEECC-CCCceEEEEcCCCeEEEEe-CCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEEEE
Confidence 444444444 3456799999999966654 569999998 3332 1111 11345677888876 3333333
Q ss_pred ecCC-C---CeEEEEEcCCCc------eEeeec---CCCCCeEEEEECCCCCEEEEeeC-------------CCcEEEee
Q psy16316 82 STKI-D---DTVRYLSLHDNK------YIRYFP---GHTKKVNSLCLSPIDDTFISGSY-------------DKTVRLWD 135 (335)
Q Consensus 82 ~~~~-d---~~i~~~~~~~~~------~~~~~~---~H~~~V~~~~~~~~~~~l~s~s~-------------D~~i~vWd 135 (335)
.... + +.|..+++..+. .+..+. +.......++|.|+|.+.++.+. .+.|.-+|
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~ 175 (352)
T 2ism_A 96 RTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLT 175 (352)
T ss_dssp EEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEEC
T ss_pred EecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEc
Confidence 2211 1 566667766431 122233 11123368999999987777542 14555555
Q ss_pred cCCC------------CceeEEEecCC-cceEEECC-CCCEEEEEEcCCe--------EEEEEccCCCCCc---------
Q psy16316 136 LRSP------------NCQGIMHVSGS-RPIAAFDP-EGLIFGVGVNSDT--------IKLYDVRSFDKGP--------- 184 (335)
Q Consensus 136 ~~~~------------~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~d~~--------v~iwd~~~~~~~~--------- 184 (335)
.... ....++..... ..-++++| ++.++++-...+. |.+......-.-+
T Consensus 176 ~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~ 255 (352)
T 2ism_A 176 PEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDP 255 (352)
T ss_dssp TTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCT
T ss_pred CCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCC
Confidence 4420 01112211111 22367888 6777766543332 4333211100000
Q ss_pred --eeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCee---eeeecccccCCCCceEEEEcCCCcEEEEEe
Q psy16316 185 --FSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC---LQTLAGFLNNKGCPLEASFTPDSKYVISGS 259 (335)
Q Consensus 185 --~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs 259 (335)
....... .......+++| .+|..+++...++.|...++..... .............+..+++.|||.++++..
T Consensus 256 ~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 256 RYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCcCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 0000000 11112356777 5677766666677788777654321 111111112234578899999998776654
No 292
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.59 E-value=0.029 Score=48.15 Aligned_cols=209 Identities=11% Similarity=0.057 Sum_probs=119.2
Q ss_pred CccEEEEEECCCC-CEEEEecCCCeEEEEEccCC---cceeeeec-ccccceEEEEecCCCeeEEeecCCCCeEEEEEcC
Q psy16316 21 TDKITSIDYSADG-LLLISCSEDDQIVIYDCELG---TNKRTVFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 21 ~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 95 (335)
...+..+.|++.+ .++.+-...+.|..+|.+.. .....+.. .-.....+++.+.....+ .+....+.|.+.+++
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly-~~d~~~~~I~~~~~~ 107 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIY-WTDSVLGTVSVADTK 107 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEE-EEETTTTEEEEEETT
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEE-EEECCCCEEEEEeCC
Confidence 3456799999865 45556667799999998761 22222222 223456677765444433 333457889999987
Q ss_pred CCceEeeecCCCCCeEEEEECCCCCE-EEEeeCC-CcEEEeecCCCCceeEEEecC-CcceEEECCCC-CEEEEEEcCCe
Q psy16316 96 DNKYIRYFPGHTKKVNSLCLSPIDDT-FISGSYD-KTVRLWDLRSPNCQGIMHVSG-SRPIAAFDPEG-LIFGVGVNSDT 171 (335)
Q Consensus 96 ~~~~~~~~~~H~~~V~~~~~~~~~~~-l~s~s~D-~~i~vWd~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~d~~ 171 (335)
.......+.........+++.|.+.. +++-... +.|...++............. ....+++++++ .++.+-+..+.
T Consensus 108 g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~ 187 (316)
T 1ijq_A 108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 187 (316)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCe
Confidence 65443334433456789999986554 4554333 688888875433222211111 12356788754 55566666789
Q ss_pred EEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec
Q psy16316 172 IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234 (335)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 234 (335)
|..+|+.... ...+...........++++. .+...++....+.|..++..+++..+.+.
T Consensus 188 I~~~d~dg~~---~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 188 ISSIDVNGGN---RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTSCS---CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEecCCCc---eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 9999986421 11221111111223567775 34444555566789999988877665553
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.58 E-value=0.066 Score=52.04 Aligned_cols=208 Identities=12% Similarity=0.075 Sum_probs=118.6
Q ss_pred CCccEEEEEECCC-CCEEEEecCCCeEEEEEccCCc---ceeeeec-ccccceEEEEecCCCeeEEeecCCCCeEEEEEc
Q psy16316 20 NTDKITSIDYSAD-GLLLISCSEDDQIVIYDCELGT---NKRTVFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSL 94 (335)
Q Consensus 20 h~~~V~~v~~s~~-g~~lasgs~Dg~i~lwd~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 94 (335)
....+..++|++. +.++.+-...+.|+.+++.... ....+.. .......+++.+.....+. +-...+.|.+.++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~-tD~~~~~I~v~~l 500 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYW-TDSVLGTVSVADT 500 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEE-EETTTTEEEEEET
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEE-EecCCCeEEEEeC
Confidence 3456778999985 4555666677889888886531 1222222 3344566777665544444 4445778999998
Q ss_pred CCCceEeeecCCCCCeEEEEECCCC-CEEEEeeCC-CcEEEeecCCCCceeEEEec-CCcceEEECCC-CCEEEEEEcCC
Q psy16316 95 HDNKYIRYFPGHTKKVNSLCLSPID-DTFISGSYD-KTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPE-GLIFGVGVNSD 170 (335)
Q Consensus 95 ~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D-~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~d~ 170 (335)
........+.........|++.|.+ .+++|-... +.|...++.......++... ..-..+++++. +.++++-...+
T Consensus 501 dG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~ 580 (791)
T 3m0c_C 501 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 580 (791)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC
Confidence 7655444444445568899999874 455554333 78888888654433332211 11234677754 55566656667
Q ss_pred eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeee
Q psy16316 171 TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTL 233 (335)
Q Consensus 171 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~ 233 (335)
.|..+++..... ..+......-....+|++ .+..|+.+. ..+.|...+..+++....+
T Consensus 581 ~I~~~d~dG~~~---~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 581 SISSIDVNGGNR---KTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEEEETTSCSC---EEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred cEEEEecCCCce---EEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 899998864221 111111111111234555 444555554 5577888888887665555
No 294
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.53 E-value=0.044 Score=48.78 Aligned_cols=211 Identities=12% Similarity=0.078 Sum_probs=119.4
Q ss_pred cCCccEEEEEECCCCC-EEEEecCCCeEEEEEccCCc---ceeeeec-ccccceEEEEecCCCeeEEeecCCCCeEEEEE
Q psy16316 19 ENTDKITSIDYSADGL-LLISCSEDDQIVIYDCELGT---NKRTVFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLS 93 (335)
Q Consensus 19 ~h~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 93 (335)
...+.+..++|++.+. ++.+-...+.|+.++++... ....+.. .......+++.+.....+. +....+.|.+.+
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~-~d~~~~~I~~~~ 187 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYW-TDSVLGTVSVAD 187 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEE-EETTTTEEEEEC
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEE-EECCCCeEEEEe
Confidence 3456688999998554 55555567889889886522 1222222 2234556666654444333 334467888888
Q ss_pred cCCCceEeeecCCCCCeEEEEECCCCC-EEEEeeC-CCcEEEeecCCCCceeEEEec-CCcceEEECCCC-CEEEEEEcC
Q psy16316 94 LHDNKYIRYFPGHTKKVNSLCLSPIDD-TFISGSY-DKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPEG-LIFGVGVNS 169 (335)
Q Consensus 94 ~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~-D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~d 169 (335)
++.......+.........+++.|.+. +++|-.. .+.|...++............ .....+++++++ .++.+-...
T Consensus 188 ~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~ 267 (400)
T 3p5b_L 188 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 267 (400)
T ss_dssp TTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCC
Confidence 876654444444445678999998654 4455423 478888888654333222211 112346788654 455555667
Q ss_pred CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec
Q psy16316 170 DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234 (335)
Q Consensus 170 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 234 (335)
+.|..+|+..... ..+......-....++++. .+..+.+....+.|..+|..+++....+.
T Consensus 268 ~~I~~~d~dG~~~---~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 268 HSISSIDVNGGNR---KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp TEEEEEETTSCCC---EEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred CEEEEEeCCCCcc---EEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 8899999864221 1121111111122456662 33344445556778889988887666654
No 295
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.51 E-value=0.04 Score=47.77 Aligned_cols=193 Identities=15% Similarity=0.198 Sum_probs=112.2
Q ss_pred EEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCC----C---E-EEEeeC--CCcEEEeecC--CCCceeEEE
Q psy16316 79 IHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID----D---T-FISGSY--DKTVRLWDLR--SPNCQGIMH 146 (335)
Q Consensus 79 ~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~----~---~-l~s~s~--D~~i~vWd~~--~~~~~~~~~ 146 (335)
++++. ..+.+.+||+ .++.++.+.. +.++.+..-|.- + + ++|.-. +++|+++++. ++.....-.
T Consensus 43 ii~t~-k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 43 LITTN-KKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEE-TTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEc-CCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 34443 3578999999 8888888864 567777776632 1 2 333333 5899999774 332211100
Q ss_pred ----e-c--CCcceEEE--CCC-CC-EEEEEEcCCeEEEEEccCCCCCce-ee--EEeccCCCccceEEEEccCCCEEEE
Q psy16316 147 ----V-S--GSRPIAAF--DPE-GL-IFGVGVNSDTIKLYDVRSFDKGPF-SN--FKFAAEKECDWTGIKFSADGKYILI 212 (335)
Q Consensus 147 ----~-~--~~~~~~~~--~~~-~~-~~~~~~~d~~v~iwd~~~~~~~~~-~~--~~~~~~~~~~~~~~~~s~~~~~l~~ 212 (335)
. . ....-+++ +|. +. ++.+...++.+..|++.....+.. .. ..+.. ..+..++..++....|++
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM--NSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEEEEETTTTEEEE
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC--CCCcceEEEcCCCCeEEE
Confidence 0 0 11122444 563 44 566677789999999854222111 11 11111 234567888998999999
Q ss_pred EeCCCeEEEEECC-----CCeeeeeecccccCCCCceEEEE--cCCCc-EEEEEe-CCCcEEEEECC-CCeeEEEe
Q psy16316 213 STNGSIIRTFDAY-----NGQCLQTLAGFLNNKGCPLEASF--TPDSK-YVISGS-TDGRIHIWNAE-KGFKVCVL 278 (335)
Q Consensus 213 ~~~~~~i~i~d~~-----~~~~~~~~~~~~~~~~~v~~~~~--sp~~~-~l~tgs-~dg~v~iwd~~-~~~~~~~~ 278 (335)
+-++.-|..|+.+ +++.+..+.. ..-...+..+++ .++++ +|++.+ .+.++.+||.. +...+..+
T Consensus 197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EETTTEEEEEECSTTSCSCCEEEEEBSS-SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred ecccceEEEEeCCcCCCCCceEEEEecC-CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 9999888888855 3444443321 111224566776 56655 555555 57789999996 44433333
No 296
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.48 E-value=0.041 Score=47.33 Aligned_cols=227 Identities=9% Similarity=0.067 Sum_probs=129.4
Q ss_pred CCeEEEEEccCCcc-eeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE-eeecCCCCCeEEEEECC-C
Q psy16316 42 DDQIVIYDCELGTN-KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI-RYFPGHTKKVNSLCLSP-I 118 (335)
Q Consensus 42 Dg~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~-~~~~~H~~~V~~~~~~~-~ 118 (335)
...|+..|++.... ...+.........+.|.+.....+ .+-...+.|..+++..+... ..+.........+++.+ .
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~ly-w~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIY-WSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEE-EEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEE-EEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 46888888876642 112222222344566766444433 33344677888888765321 12222234566788886 4
Q ss_pred CCEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECCC-CCEEEEEE-cCCeEEEEEccCCCCCceeeEEeccCCC
Q psy16316 119 DDTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPE-GLIFGVGV-NSDTIKLYDVRSFDKGPFSNFKFAAEKE 195 (335)
Q Consensus 119 ~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 195 (335)
+++.++-...+.|.+.|+............ .....++++|. +.++.+-. ..+.|...++.... ...+ ....-
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~--~~~~l 165 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFII--INSEI 165 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS---CEEE--ECSSC
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC---eEEE--EECCC
Confidence 556677777889999998754333222111 11234577775 44555443 35678877765311 1111 11111
Q ss_pred ccceEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCee
Q psy16316 196 CDWTGIKFSADGKYILIST-NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK 274 (335)
Q Consensus 196 ~~~~~~~~s~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~ 274 (335)
...++++++|++..|..+. ..+.|..+|..... .+.+.. .....+..+++.. +.++.+-...+.|..++..++..
T Consensus 166 ~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~--~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVK--GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC--SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEec--CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 2347899999877777664 45789999986432 222221 1234567788753 46677777788999999877654
Q ss_pred EEEe
Q psy16316 275 VCVL 278 (335)
Q Consensus 275 ~~~~ 278 (335)
...+
T Consensus 242 ~~~i 245 (318)
T 3sov_A 242 LREI 245 (318)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 3333
No 297
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.44 E-value=0.037 Score=48.32 Aligned_cols=194 Identities=11% Similarity=0.147 Sum_probs=107.0
Q ss_pred EEEECCCCCEEEEec------------CCCeEEEEEccCC--ccee-eeec-----ccccceEEEEecC--CCe-eEEee
Q psy16316 26 SIDYSADGLLLISCS------------EDDQIVIYDCELG--TNKR-TVFS-----KKYGVDLIRFTHA--KQA-AIHAS 82 (335)
Q Consensus 26 ~v~~s~~g~~lasgs------------~Dg~i~lwd~~~~--~~~~-~~~~-----~~~~~~~~~~~~~--~~~-~~~~~ 82 (335)
.+...|+|..+++++ .+|.|.++|.++. +... .+.+ ..+....+.+..+ +.. .+++-
T Consensus 54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvn 133 (355)
T 3sre_A 54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN 133 (355)
T ss_dssp EEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEE
Confidence 455688887666663 7999999998743 2111 1211 1233444555442 332 33332
Q ss_pred cC-CCCeEEEEEcCCC-c---eEeeecCCC-CCeEEEEECCCCCEEEEeeC-----------------CCcEEEeecCCC
Q psy16316 83 TK-IDDTVRYLSLHDN-K---YIRYFPGHT-KKVNSLCLSPIDDTFISGSY-----------------DKTVRLWDLRSP 139 (335)
Q Consensus 83 ~~-~d~~i~~~~~~~~-~---~~~~~~~H~-~~V~~~~~~~~~~~l~s~s~-----------------D~~i~vWd~~~~ 139 (335)
.. .+.++.+|+++.. . .+..+.+.. ...+.+.+.++|.+.++... .+.|..+|. +
T Consensus 134 h~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~ 211 (355)
T 3sre_A 134 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--N 211 (355)
T ss_dssp CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--T
T ss_pred CCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--C
Confidence 22 3678888887653 2 233454432 45789999999988777541 244555554 3
Q ss_pred CceeEEEecCCcceEEECCCCCEEEEE-EcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEcc-CCCEEEEEeCC-
Q psy16316 140 NCQGIMHVSGSRPIAAFDPEGLIFGVG-VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA-DGKYILISTNG- 216 (335)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~~- 216 (335)
++..+...-....-++++|+++.+.++ +..+.|..|++... +........ ........+++++ +|++.+++..+
T Consensus 212 ~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~--g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g 288 (355)
T 3sre_A 212 DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN--WTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNG 288 (355)
T ss_dssp CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT--SCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCH
T ss_pred eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC--CcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCc
Confidence 333222222233457899999765554 55789999998642 222222111 1123346788999 58877765433
Q ss_pred CeEEEEEC
Q psy16316 217 SIIRTFDA 224 (335)
Q Consensus 217 ~~i~i~d~ 224 (335)
..|..|+.
T Consensus 289 ~~v~~~~P 296 (355)
T 3sre_A 289 MRIFFYDA 296 (355)
T ss_dssp HHHHSCCT
T ss_pred eEEEEECC
Confidence 33433443
No 298
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.43 E-value=0.005 Score=59.17 Aligned_cols=208 Identities=12% Similarity=0.073 Sum_probs=114.8
Q ss_pred ccEEEEEECCCCCEEE-EecCCCeEEEEEccCC---cceeeee-cccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC
Q psy16316 22 DKITSIDYSADGLLLI-SCSEDDQIVIYDCELG---TNKRTVF-SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD 96 (335)
Q Consensus 22 ~~V~~v~~s~~g~~la-sgs~Dg~i~lwd~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 96 (335)
..+..++|++.+..|. +-...+.|+.+++... .....+. ........+++.+..... +.+....+.|.++++..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~L-Y~tD~~~~~I~v~d~dg 484 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNI-YWTDSVLGTVSVADTKG 484 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBC-EECCTTTSCEEEEBSSS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcE-EEEeccCCeEEEEecCC
Confidence 3456888998665544 4456788999998751 1111111 111233445555433333 33334567888888876
Q ss_pred CceEeeecCCCCCeEEEEECCCC-CEEEEeeCC-CcEEEeecCCCCceeEEEec-CCcceEEECCC-CCEEEEEEcCCeE
Q psy16316 97 NKYIRYFPGHTKKVNSLCLSPID-DTFISGSYD-KTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPE-GLIFGVGVNSDTI 172 (335)
Q Consensus 97 ~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D-~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~d~~v 172 (335)
......+.........+++.|.+ .++++-... +.|...++.......+.... .....++++|+ +.++++-+..+.|
T Consensus 485 ~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I 564 (699)
T 1n7d_A 485 VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564 (699)
T ss_dssp CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence 55444443333456788999865 445554333 78888887543222111111 11234788876 5677777777899
Q ss_pred EEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec
Q psy16316 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234 (335)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 234 (335)
..+|+..... ..+...........+|++..+ .++++....+.|..++..+++.++.+.
T Consensus 565 ~~~d~dG~~~---~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 565 SSIDVNGGNR---KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EEECSSSSCC---EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EEEccCCCce---EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 9999864211 111110011111234666543 333444556789999998888776664
No 299
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.42 E-value=0.055 Score=47.26 Aligned_cols=251 Identities=12% Similarity=0.083 Sum_probs=121.5
Q ss_pred ccceeeeccCCccEEEEEECCCCC-EEEEecCCCeEEEEEccCCcceeee-------ecccccceEEEEecC---CCeeE
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTV-------FSKKYGVDLIRFTHA---KQAAI 79 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~ 79 (335)
|++.....+ -.....+.|.|+|+ ++++ ...|.|++++.+ +.....+ .....+...+++.++ ....+
T Consensus 8 ~~~~~va~~-l~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lY 84 (353)
T 2g8s_A 8 VNVEVLQDK-LDHPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIW 84 (353)
T ss_dssp SEEEEEEEE-ESSEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEE
T ss_pred cEEEEEECC-CCCcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEE
Confidence 444333333 34568999999999 6655 457999999853 2211111 111234567788775 23333
Q ss_pred EeecC--C----CCeEEEEEcCCC--c--eEe----eecC---CCCCeEEEEECCCCCEEEEeeCC-------------C
Q psy16316 80 HASTK--I----DDTVRYLSLHDN--K--YIR----YFPG---HTKKVNSLCLSPIDDTFISGSYD-------------K 129 (335)
Q Consensus 80 ~~~~~--~----d~~i~~~~~~~~--~--~~~----~~~~---H~~~V~~~~~~~~~~~l~s~s~D-------------~ 129 (335)
++... . ...|..+++... + ..+ .+.. ....-..+.|.|+|.+.++.+.. +
T Consensus 85 v~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g 164 (353)
T 2g8s_A 85 LSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQG 164 (353)
T ss_dssp EEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTT
T ss_pred EEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCe
Confidence 32211 1 224555555432 1 111 1221 11123579999999777765432 4
Q ss_pred cEEEeecCCCC------------ceeEEEecCC-cceEEECC-CCCEEEEEEc-C--CeEEEEEccCCCCCceee-----
Q psy16316 130 TVRLWDLRSPN------------CQGIMHVSGS-RPIAAFDP-EGLIFGVGVN-S--DTIKLYDVRSFDKGPFSN----- 187 (335)
Q Consensus 130 ~i~vWd~~~~~------------~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-d--~~v~iwd~~~~~~~~~~~----- 187 (335)
.|.-.|....- ...++..... ..-++|+| ++.++++-.. + ..|.+......-.-+...
T Consensus 165 ~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~ 244 (353)
T 2g8s_A 165 KLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINY 244 (353)
T ss_dssp EEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCT
T ss_pred EEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCC
Confidence 56666654320 1122222211 23467888 6666665322 1 123221110000000000
Q ss_pred ---------------EE---eccCCCccceEEEEcc-------CCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCC
Q psy16316 188 ---------------FK---FAAEKECDWTGIKFSA-------DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGC 242 (335)
Q Consensus 188 ---------------~~---~~~~~~~~~~~~~~s~-------~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 242 (335)
+. ..........+++|.. ++.++++...++.|...++..++......-.......
T Consensus 245 ~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r 324 (353)
T 2g8s_A 245 SGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQR 324 (353)
T ss_dssp TSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCC
T ss_pred CCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCc
Confidence 00 0000112345677753 5777777777788888888765433221111122345
Q ss_pred ceEEEEcCCCcEEEEEe-CCCcE
Q psy16316 243 PLEASFTPDSKYVISGS-TDGRI 264 (335)
Q Consensus 243 v~~~~~sp~~~~l~tgs-~dg~v 264 (335)
+..+++.|||.++++.. .+|+|
T Consensus 325 p~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 325 IRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp EEEEEECTTSCEEEEECSTTEEE
T ss_pred eeEEEECCCCcEEEEEeCCCCEE
Confidence 78899999998766533 34544
No 300
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.32 E-value=0.12 Score=48.99 Aligned_cols=201 Identities=7% Similarity=-0.025 Sum_probs=117.9
Q ss_pred ccEEEEEECCCCC-EEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceE
Q psy16316 22 DKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYI 100 (335)
Q Consensus 22 ~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 100 (335)
..+..++|++.+. ++.+-..++.|+.++++.......+.........+++.+.....+. +-...+.|.+.+++.....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~-tD~~~~~I~v~~~dG~~~~ 115 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYW-ADTGTNRIEVSKLDGQHRQ 115 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE-EETTTTEEEEEETTSTTCE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEE-EECCCCEEEEEecCCCcEE
Confidence 4578999998655 4556667899999998754333222222234566777655444443 3345678899998765433
Q ss_pred eeecCCCCCeEEEEECCC-CCEEEEe-eCCCcEEEeecCCCCceeEEEecCCcceEEECCC-CCEEEEEEcCCeEEEEEc
Q psy16316 101 RYFPGHTKKVNSLCLSPI-DDTFISG-SYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPE-GLIFGVGVNSDTIKLYDV 177 (335)
Q Consensus 101 ~~~~~H~~~V~~~~~~~~-~~~l~s~-s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~v~iwd~ 177 (335)
..+...-.....+++.|. |.+.+|- +..+.|...++.......+......-..++++++ +.++.+-...+.|..+|+
T Consensus 116 ~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 116 VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 333344456789999985 4455553 2356788888765443333321112234678885 455666666788999998
Q ss_pred cCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeee
Q psy16316 178 RSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL 230 (335)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~ 230 (335)
..... ..+... -....++++.. +...++-...+.|...|..+++..
T Consensus 196 dG~~~---~v~~~~---l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~ 241 (628)
T 4a0p_A 196 LGLNR---EVIADD---LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNR 241 (628)
T ss_dssp TSCSC---EEEEEC---CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred CCCce---EEeecc---CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCce
Confidence 65322 111111 11224677754 333344445678888887776543
No 301
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.09 E-value=0.13 Score=44.94 Aligned_cols=189 Identities=16% Similarity=0.201 Sum_probs=101.0
Q ss_pred ecCCCCCeEEEEECCCCCEEEEee------------CCCcEEEeecCCC--CceeEEEecC--------CcceEEEC--C
Q psy16316 103 FPGHTKKVNSLCLSPIDDTFISGS------------YDKTVRLWDLRSP--NCQGIMHVSG--------SRPIAAFD--P 158 (335)
Q Consensus 103 ~~~H~~~V~~~~~~~~~~~l~s~s------------~D~~i~vWd~~~~--~~~~~~~~~~--------~~~~~~~~--~ 158 (335)
+++-......+...|+|..+++++ .+|.|.++|..+. +.. .+...+ ...-+.+. .
T Consensus 45 i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~-~l~~~g~~~~~~~f~PhGi~~~~d~ 123 (355)
T 3sre_A 45 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-ELEIIGNTLDISSFNPHGISTFIDD 123 (355)
T ss_dssp CTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEE-ECEEECSSCCGGGCCEEEEEEEECT
T ss_pred eCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE-EEEccCCCCCcCceeeeeeEEEECC
Confidence 444223445666778775555542 7999999998743 322 222222 11112222 2
Q ss_pred CCC--EEEEEEc--CCeEEEEEccCCCCCceeeEEec-cCCCccceEEEEccCCCEEEEEe-----------------CC
Q psy16316 159 EGL--IFGVGVN--SDTIKLYDVRSFDKGPFSNFKFA-AEKECDWTGIKFSADGKYILIST-----------------NG 216 (335)
Q Consensus 159 ~~~--~~~~~~~--d~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~-----------------~~ 216 (335)
++. ++++-.. +.++.+|++..... ...-.... ...-...+.+.+.++|.+.++.. ..
T Consensus 124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~-~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~ 202 (355)
T 3sre_A 124 DNTVYLLVVNHPGSSSTVEVFKFQEEEK-SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW 202 (355)
T ss_dssp TCCEEEEEEECSTTCCEEEEEEEETTTT-EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred CCcEEEEEEECCCCCCeEEEEEEECCCC-EEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCc
Confidence 343 4444332 46788888765322 11111111 12223357899999998776654 12
Q ss_pred CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEE-EeCCCcEEEEECCC-Cee--EEEeCCCCCCCeEEEEeC
Q psy16316 217 SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS-GSTDGRIHIWNAEK-GFK--VCVLDADHPSPVQTIQFN 292 (335)
Q Consensus 217 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~t-gs~dg~v~iwd~~~-~~~--~~~~~~~h~~~v~~v~~s 292 (335)
+.|..+|. +++ +.+. .....+..++|+||++.|.. -+..++|+.|++.. +.. ...+. .++.--.+++.
T Consensus 203 g~vyr~d~--~~~-~~~~---~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD 274 (355)
T 3sre_A 203 SFVTYYSP--NDV-RVVA---EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVD 274 (355)
T ss_dssp EEEEEECT--TCC-EEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEEC
T ss_pred cEEEEEEC--CeE-EEee---cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEe
Confidence 44555555 322 2221 12244678999999976554 45678899999853 321 12221 23444567888
Q ss_pred C-CCcEEEee
Q psy16316 293 P-KFNMMASA 301 (335)
Q Consensus 293 p-~~~~~~s~ 301 (335)
+ +|++.+++
T Consensus 275 ~e~G~lwva~ 284 (355)
T 3sre_A 275 PVTGDLWVGC 284 (355)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCcEEEEe
Confidence 8 58877655
No 302
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.02 E-value=0.15 Score=44.51 Aligned_cols=244 Identities=14% Similarity=0.124 Sum_probs=124.7
Q ss_pred ccceeeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeee------cccccceEEEEecC---CCeeEEe
Q psy16316 11 YKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF------SKKYGVDLIRFTHA---KQAAIHA 81 (335)
Q Consensus 11 ~~~~~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~ 81 (335)
|++.....+ -.....++|.|+|.++++- .+|.|+++|. .+. ..+. ........+++.++ ....+++
T Consensus 19 ~~~~~va~~-l~~P~~ia~~pdG~l~V~e-~~g~I~~~d~-~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 19 FKISEVASD-LEVPWSIAPLGGGRYLVTE-RPGRLVLISP-SGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp EEEEEEECS-CSCEEEEEEEETTEEEEEE-TTTEEEEECS-SCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred eEEEEEeCC-CCCCeEEEEcCCCeEEEEe-CCCEEEEEeC-CCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEE
Confidence 444443333 4457899999999866654 5599998873 444 2221 12244677888776 3333333
Q ss_pred ecC--CC----CeEEEEEcCCC-------ceE-eeecC-CCCCeEEEEECCCCCEEEEeeC-------------CCcEEE
Q psy16316 82 STK--ID----DTVRYLSLHDN-------KYI-RYFPG-HTKKVNSLCLSPIDDTFISGSY-------------DKTVRL 133 (335)
Q Consensus 82 ~~~--~d----~~i~~~~~~~~-------~~~-~~~~~-H~~~V~~~~~~~~~~~l~s~s~-------------D~~i~v 133 (335)
... .+ +.|..+++... +.+ ..+.. ....-..+.|.|+|.+.++.+. .+.|..
T Consensus 94 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~r 173 (354)
T 3a9g_A 94 ASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILR 173 (354)
T ss_dssp EEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEE
T ss_pred EeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEE
Confidence 221 12 45666666543 111 11221 1123467999999988887543 244555
Q ss_pred eecCCCC-------ceeEEEecC-CcceEEECC-CCCEEEEEEcCC---eEEEEEccCCCCCc-----------eeeEEe
Q psy16316 134 WDLRSPN-------CQGIMHVSG-SRPIAAFDP-EGLIFGVGVNSD---TIKLYDVRSFDKGP-----------FSNFKF 190 (335)
Q Consensus 134 Wd~~~~~-------~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~d~---~v~iwd~~~~~~~~-----------~~~~~~ 190 (335)
.|....- ...++.... ...-++++| ++.++++-...+ .|.+......-.-+ ......
T Consensus 174 i~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 253 (354)
T 3a9g_A 174 VDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVID 253 (354)
T ss_dssp ECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred EcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEee
Confidence 5543210 011221111 123468888 677776643222 34433211100000 000000
Q ss_pred ccCCCccceEEEE-------ccCCCEEEEEeCCCeEEEEECCCCeeeeeecccc-cCCCCceEEEEcCCCcEEEEEe
Q psy16316 191 AAEKECDWTGIKF-------SADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL-NNKGCPLEASFTPDSKYVISGS 259 (335)
Q Consensus 191 ~~~~~~~~~~~~~-------s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~tgs 259 (335)
.........+++| ..+|.++++...++.|..+++............. .....+..+++.|||.++++..
T Consensus 254 ~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 254 TGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 0011223467888 3678777777777888888887532111111111 1234578899999998777664
No 303
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.96 E-value=0.26 Score=46.54 Aligned_cols=221 Identities=10% Similarity=0.061 Sum_probs=132.3
Q ss_pred CCCeEEEEEccCCcceeeeec-ccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCC
Q psy16316 41 EDDQIVIYDCELGTNKRTVFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID 119 (335)
Q Consensus 41 ~Dg~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~ 119 (335)
....|+.-|+++......+.. .-.....++|.+.....+. +...++.|..+++........+.........+++.+.+
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lyw-tD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~ 91 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYW-TDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLG 91 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEE-EETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEE-EECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCC
Confidence 457888888876543322221 1234566777776554443 33457788888887654444444333456788888654
Q ss_pred -CEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECC-CCCEEEEEE-cCCeEEEEEccCCCCCceeeEEeccCCC
Q psy16316 120 -DTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDP-EGLIFGVGV-NSDTIKLYDVRSFDKGPFSNFKFAAEKE 195 (335)
Q Consensus 120 -~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 195 (335)
++.++-...+.|.+.|+............ ..-..++++| .|.++.+-. ..+.|...++.... ...+. ..-
T Consensus 92 ~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~---~~~l~---~~~ 165 (628)
T 4a0p_A 92 KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE---RTTLV---PNV 165 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---CEEEE---CSC
T ss_pred CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc---eEEEE---CCC
Confidence 56677777889999998754433222111 1123467787 455655543 25677777765321 11111 112
Q ss_pred ccceEEEEccCCCEEEEEeC-CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCe
Q psy16316 196 CDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGF 273 (335)
Q Consensus 196 ~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~ 273 (335)
...+++++++++..|..+.. .+.|..+|+..... +.+.. ....+..+++.. +.+++|-...+.|...|..++.
T Consensus 166 ~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~---~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 166 GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIAD---DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEE---CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeec---cCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 23478999998887776654 56799999875433 33322 223466788765 5666776678889999976664
No 304
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.88 E-value=0.17 Score=44.95 Aligned_cols=149 Identities=14% Similarity=0.174 Sum_probs=90.0
Q ss_pred CCCCEEEEeeCCCcEEEeecCCCCceeEEEecC-----CcceEEECCCCCEEEEEEcCCeEEEEEccCCCCC--------
Q psy16316 117 PIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG-----SRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKG-------- 183 (335)
Q Consensus 117 ~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~-------- 183 (335)
.++..++.+ .++.||+=++.....-+.++... .+.-+.++|+|.++|..+. .+|.+..+......
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccc
Confidence 345555554 35777777776443333444432 2344789999999998854 68999888732111
Q ss_pred ceeeEEeccC-----CCccceEEEEccC---CCEEEEEeCCCeEEEEECCCCee-eeeec------ccccCCCCceEEEE
Q psy16316 184 PFSNFKFAAE-----KECDWTGIKFSAD---GKYILISTNGSIIRTFDAYNGQC-LQTLA------GFLNNKGCPLEASF 248 (335)
Q Consensus 184 ~~~~~~~~~~-----~~~~~~~~~~s~~---~~~l~~~~~~~~i~i~d~~~~~~-~~~~~------~~~~~~~~v~~~~~ 248 (335)
+.....+..+ ....+..+-|+|- +..|++=+.|+.|++||+..... ...+. +.......+.+++|
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence 1111111111 2346788999985 45889999999999999975221 11121 11112245778999
Q ss_pred cCCCcEEEE--EeCCCcEEEE
Q psy16316 249 TPDSKYVIS--GSTDGRIHIW 267 (335)
Q Consensus 249 sp~~~~l~t--gs~dg~v~iw 267 (335)
++++-.|.. .+.+|.|+-.
T Consensus 188 g~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 188 SKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CTTSSCEEEEECTTSCEEEEE
T ss_pred cCCCcEEEEEecCCCCCEEEE
Confidence 997754444 5588888654
No 305
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.87 E-value=0.17 Score=42.69 Aligned_cols=228 Identities=14% Similarity=0.154 Sum_probs=110.3
Q ss_pred CCCCEEEEec-CC-----CeEEEEEccCCcceee--eecccccceEEEEecCCCeeEEeecCCC-----CeEEEEEcCCC
Q psy16316 31 ADGLLLISCS-ED-----DQIVIYDCELGTNKRT--VFSKKYGVDLIRFTHAKQAAIHASTKID-----DTVRYLSLHDN 97 (335)
Q Consensus 31 ~~g~~lasgs-~D-----g~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~ 97 (335)
.++.+++.|+ .+ ..+.+||..+.+-... ..........+. . .+. +++.++.+ +.+.+||+.+.
T Consensus 13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~-l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--L-HDR-IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--E-TTE-EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--E-CCE-EEEEcCCCCCccCceEEEEECCCC
Confidence 4566777777 33 3678889877643221 111111111222 1 222 33333322 46888998776
Q ss_pred c---eEee--ecCCCCCeEEEEECCCCCEEEEeeCC-----CcEEEeecCCCCceeEEEecCCc-ceEEECCCCCEEEEE
Q psy16316 98 K---YIRY--FPGHTKKVNSLCLSPIDDTFISGSYD-----KTVRLWDLRSPNCQGIMHVSGSR-PIAAFDPEGLIFGVG 166 (335)
Q Consensus 98 ~---~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~D-----~~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 166 (335)
+ -... +......-.++.+ ++..++.|+.+ ..+.++|+.+.+....-...... ...+...++.+++.|
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 166 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLG 166 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEEC
T ss_pred CCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEEC
Confidence 5 3222 2211122222222 46677777754 35788888776544332221111 111112256677777
Q ss_pred EcC-----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-----CeEEEEECCCCeeeeeeccc
Q psy16316 167 VNS-----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-----SIIRTFDAYNGQCLQTLAGF 236 (335)
Q Consensus 167 ~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~~ 236 (335)
+.+ ..+..||+.+. .................+. .++..++.++.+ ..+.+||+.+.+.... ...
T Consensus 167 G~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~ 240 (301)
T 2vpj_A 167 GYDGLNILNSVEKYDPHTG---HWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV-TSM 240 (301)
T ss_dssp CBCSSCBCCCEEEEETTTT---EEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEE-CCC
T ss_pred CCCCCcccceEEEEeCCCC---cEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEEC-CCC
Confidence 643 46788887642 2332221111111112222 255666665542 4689999988764332 111
Q ss_pred ccCCCCceEEEEcCCCcEEEEEeCC-----CcEEEEECCCC
Q psy16316 237 LNNKGCPLEASFTPDSKYVISGSTD-----GRIHIWNAEKG 272 (335)
Q Consensus 237 ~~~~~~v~~~~~sp~~~~l~tgs~d-----g~v~iwd~~~~ 272 (335)
........ + ...++++++.|+.+ ..+.+||..+.
T Consensus 241 p~~r~~~~-~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 241 TTPRCYVG-A-TVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SSCCBSCE-E-EEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CCccccee-E-EEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 11111111 2 22367788888866 35778887654
No 306
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.81 E-value=0.35 Score=45.63 Aligned_cols=227 Identities=9% Similarity=0.078 Sum_probs=121.5
Q ss_pred CCeEEEEEccCCcc-eeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCce-EeeecCCCCCeEEEEECCC-
Q psy16316 42 DDQIVIYDCELGTN-KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY-IRYFPGHTKKVNSLCLSPI- 118 (335)
Q Consensus 42 Dg~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~H~~~V~~~~~~~~- 118 (335)
...|+.-|++.... ...+...-.....+++.+.....+.+. ...+.|..++++.... ...+.........+++.+.
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD-~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSD-VSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEE-TTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEE-CCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 35666666654321 111112223345666766555444333 3456777777765432 2233333356789999985
Q ss_pred CCEEEEeeCCCcEEEeecCCCCceeEEEec-CCcceEEECCC-CCEEEEEEc-CCeEEEEEccCCCCCceeeEEeccCCC
Q psy16316 119 DDTFISGSYDKTVRLWDLRSPNCQGIMHVS-GSRPIAAFDPE-GLIFGVGVN-SDTIKLYDVRSFDKGPFSNFKFAAEKE 195 (335)
Q Consensus 119 ~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~ 195 (335)
+++.++-...+.|.+.|+.......+.... ..-..++++|. |.++.+-.. ...|...++.... ...+. ...-
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~---~~~l~--~~~~ 170 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFIII--NSEI 170 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS---CEEEE--CSSC
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc---eEEEE--eCCC
Confidence 456677777899999998765443333111 11234677775 555555432 3566666654311 11111 1112
Q ss_pred ccceEEEEccCCCEEEEEeC-CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCee
Q psy16316 196 CDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK 274 (335)
Q Consensus 196 ~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~ 274 (335)
...+++++++++..|..+.. .+.|..+|+........+.+ ....+..+++..+ ..+++-...+.|...|..++..
T Consensus 171 ~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~---~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 171 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG---SLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeC---CCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 23478999998777776644 46788888865433222221 1233556888766 6666766788899999877754
Q ss_pred EEEe
Q psy16316 275 VCVL 278 (335)
Q Consensus 275 ~~~~ 278 (335)
...+
T Consensus 247 ~~~i 250 (619)
T 3s94_A 247 LREI 250 (619)
T ss_dssp CEEC
T ss_pred cEEE
Confidence 4333
No 307
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.67 E-value=0.45 Score=44.91 Aligned_cols=117 Identities=9% Similarity=0.011 Sum_probs=72.2
Q ss_pred CccEEEEEECCCC-CEEEEecCCCeEEEEEccCCcceeeee-cccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc
Q psy16316 21 TDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVF-SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK 98 (335)
Q Consensus 21 ~~~V~~v~~s~~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 98 (335)
......+++++.+ ++.++-...+.|.+.|++.... +.+. ..-.....+++.+.....+....+....|...+++...
T Consensus 83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~ 161 (619)
T 3s94_A 83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS 161 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc
Confidence 3567899999855 4566666789999999875433 3333 33344667777776555555443334567666665443
Q ss_pred eEeeecCCCCCeEEEEECCCC-CEEEEeeCCCcEEEeecCC
Q psy16316 99 YIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRS 138 (335)
Q Consensus 99 ~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~i~vWd~~~ 138 (335)
........-...+.+++.+++ ++.++=+..+.|...|+..
T Consensus 162 ~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 162 RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence 333333334456788998864 4455555667788887754
No 308
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.62 E-value=0.26 Score=41.59 Aligned_cols=226 Identities=10% Similarity=0.092 Sum_probs=109.4
Q ss_pred CCEEEEecC--CCeEEEEEccCCcceee--eecccccceEEEEecCCCeeEEeecCC----CCeEEEEEcCCCceEee--
Q psy16316 33 GLLLISCSE--DDQIVIYDCELGTNKRT--VFSKKYGVDLIRFTHAKQAAIHASTKI----DDTVRYLSLHDNKYIRY-- 102 (335)
Q Consensus 33 g~~lasgs~--Dg~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~i~~~~~~~~~~~~~-- 102 (335)
+.+++.||. ...+.+||..+.+-... ..........+.. ... +++.++. -+.+..||+.+++-...
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~-lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNV-VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTE-EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCE-EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 445666664 36788899887653221 1111111122221 222 3333333 36678889887654332
Q ss_pred ecCCCCCeEEEEECCCCCEEEEeeCC------CcEEEeecCCCCceeEEEecCCc-ceEEECCCCCEEEEEEc-------
Q psy16316 103 FPGHTKKVNSLCLSPIDDTFISGSYD------KTVRLWDLRSPNCQGIMHVSGSR-PIAAFDPEGLIFGVGVN------- 168 (335)
Q Consensus 103 ~~~H~~~V~~~~~~~~~~~l~s~s~D------~~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------- 168 (335)
++.-...-..+.+ ++.+++.|+.+ ..+.++|..+.+....-...... ...+...++.+++.|+.
T Consensus 88 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 165 (306)
T 3ii7_A 88 PPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSG 165 (306)
T ss_dssp CSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTC
T ss_pred CCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcc
Confidence 2211111122222 56677888776 56888898776533221111111 11111225666666653
Q ss_pred --CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-----CeEEEEECCCCeeeeeecccccCCC
Q psy16316 169 --SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-----SIIRTFDAYNGQCLQTLAGFLNNKG 241 (335)
Q Consensus 169 --d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~~~~~~~ 241 (335)
...+.+||+.+. .................+.+ +++.++.|+.+ ..+.+||+.+.+-... ........
T Consensus 166 ~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~ 239 (306)
T 3ii7_A 166 RVLNSCEVYDPATE---TWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-SPMPWKGV 239 (306)
T ss_dssp EECCCEEEEETTTT---EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEEC-CCCSCCBS
T ss_pred cccceEEEeCCCCC---eEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-CCCCCCcc
Confidence 345778887642 23322211111111112222 55555555432 4588999987754322 11111111
Q ss_pred CceEEEEcCCCcEEEEEeCC-----CcEEEEECCCC
Q psy16316 242 CPLEASFTPDSKYVISGSTD-----GRIHIWNAEKG 272 (335)
Q Consensus 242 ~v~~~~~sp~~~~l~tgs~d-----g~v~iwd~~~~ 272 (335)
....+.+ ++++++.|+.+ ..+.+||..+.
T Consensus 240 ~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 240 TVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred ceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 1222233 67888888854 45888888764
No 309
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.58 E-value=0.15 Score=40.99 Aligned_cols=182 Identities=9% Similarity=0.002 Sum_probs=93.9
Q ss_pred CEEEEeeCCCcEEEeecCCCCc------eeEEEe--cCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeE--E
Q psy16316 120 DTFISGSYDKTVRLWDLRSPNC------QGIMHV--SGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNF--K 189 (335)
Q Consensus 120 ~~l~s~s~D~~i~vWd~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~--~ 189 (335)
.+|.....| +++.=....... ...+.. -.....++|+|+|.++++ .++.+.-.+..+......... .
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 456666666 555544433321 111111 123457899999999988 566655555432111111000 0
Q ss_pred eccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecc--ccc--CCCCceEEEEcCCCcEEEEEeCCCcEE
Q psy16316 190 FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG--FLN--NKGCPLEASFTPDSKYVISGSTDGRIH 265 (335)
Q Consensus 190 ~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~~~--~~~~v~~~~~sp~~~~l~tgs~dg~v~ 265 (335)
.-...-.....+.|+|+|.+-++ .|+.|+-++..+...-.-+.. ... .=..+..+.|.|+|.+.+.. |++++
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 00000111367899999988777 447887777644222111110 000 00134678999999888887 77765
Q ss_pred EEECCCCe------eEEEeCCCCCCCeEEEEeCCCCcEEEeeeceeEEecc
Q psy16316 266 IWNAEKGF------KVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFWIP 310 (335)
Q Consensus 266 iwd~~~~~------~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~~~~w~~ 310 (335)
-+....+. ....+....-..-.-+.|.|++.+.+.. +.++|-.
T Consensus 158 r~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y~~ 206 (236)
T 1tl2_A 158 KALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFYED 206 (236)
T ss_dssp EECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred ecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEEec
Confidence 54433110 1111111122234457799999887776 4466643
No 310
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.33 E-value=0.39 Score=40.39 Aligned_cols=227 Identities=11% Similarity=0.195 Sum_probs=107.4
Q ss_pred CCCEEEEecCC----CeEEEEEccCCcceee--eecccccceEEEEecCCCeeEEeecCCC-----CeEEEEEcCCCceE
Q psy16316 32 DGLLLISCSED----DQIVIYDCELGTNKRT--VFSKKYGVDLIRFTHAKQAAIHASTKID-----DTVRYLSLHDNKYI 100 (335)
Q Consensus 32 ~g~~lasgs~D----g~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~~ 100 (335)
++.+++.||.+ ..+.+||..+.+-... ..........+.. ... +++.++.+ +.+.+||+.+.+-.
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~-lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM---AGL-VFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTE-EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE---CCE-EEEEeCcCCCccccceEEECCCCCcee
Confidence 34566666653 4578888877643221 1111111111211 223 33333322 45778888776533
Q ss_pred ee--ecCCCCCeEEEEECCCCCEEEEeeCCC-----cEEEeecCCCCceeEEEecCCc-ceEEECCCCCEEEEEEc----
Q psy16316 101 RY--FPGHTKKVNSLCLSPIDDTFISGSYDK-----TVRLWDLRSPNCQGIMHVSGSR-PIAAFDPEGLIFGVGVN---- 168 (335)
Q Consensus 101 ~~--~~~H~~~V~~~~~~~~~~~l~s~s~D~-----~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 168 (335)
.. ++.....-.++.+ ++..++.|+.++ .+.++|+.+.+....-...... ...+...++.+++.|+.
T Consensus 91 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 168 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVAS 168 (302)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTT
T ss_pred eCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCC
Confidence 32 2211111122222 456777777653 5678888765433221111111 01111125566666653
Q ss_pred ---CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-----CeEEEEECCCCeeeeeecccccCC
Q psy16316 169 ---SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-----SIIRTFDAYNGQCLQTLAGFLNNK 240 (335)
Q Consensus 169 ---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~~~~~~ 240 (335)
...+.+||+.+. .................+. .++..++.|+.+ ..+.+||+.+.+... +.......
T Consensus 169 ~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r 242 (302)
T 2xn4_A 169 RQCLSTVECYNATTN---EWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ-VADMNMCR 242 (302)
T ss_dssp TEECCCEEEEETTTT---EEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEE-ECCCSSCC
T ss_pred CccccEEEEEeCCCC---cEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEee-CCCCCCcc
Confidence 235778887642 2222221111111111222 256666665443 468899998875433 21111111
Q ss_pred CCceEEEEcCCCcEEEEEeCCC-----cEEEEECCCC
Q psy16316 241 GCPLEASFTPDSKYVISGSTDG-----RIHIWNAEKG 272 (335)
Q Consensus 241 ~~v~~~~~sp~~~~l~tgs~dg-----~v~iwd~~~~ 272 (335)
... .+ ...++++++.|+.++ .+.+||..+.
T Consensus 243 ~~~-~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 243 RNA-GV-CAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp BSC-EE-EEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred ccC-eE-EEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 111 12 223678888888664 4888988765
No 311
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.27 E-value=0.47 Score=40.68 Aligned_cols=237 Identities=11% Similarity=0.085 Sum_probs=114.1
Q ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeec---ccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC
Q psy16316 20 NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS---KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD 96 (335)
Q Consensus 20 h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 96 (335)
....+..+.|++ +..++ ++.++.|.. ..+.|+.-..+.. ....+..+.+..+. .+++.+. ++.+.. ..+.
T Consensus 78 ~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~-~g~v~~-S~Dg 150 (327)
T 2xbg_A 78 SDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNG--SAEMITN-VGAIYR-TKDS 150 (327)
T ss_dssp CCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETT--EEEEEET-TCCEEE-ESST
T ss_pred CCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCC--CEEEEeC-CccEEE-EcCC
Confidence 345788999986 44444 455665543 3333332222211 11223444443332 2333332 333321 2222
Q ss_pred Cce-EeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE-ecCCcceEEECCCCCEEEEEEcCCeEEE
Q psy16316 97 NKY-IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDTIKL 174 (335)
Q Consensus 97 ~~~-~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v~i 174 (335)
++. .....++...+.++.+.+++..++.+...+..+-+|-....-..... .......+.+.+++.+++++ .++.+.+
T Consensus 151 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~ 229 (327)
T 2xbg_A 151 GKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIV-NGGKIAF 229 (327)
T ss_dssp TSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEE-TTTEEEE
T ss_pred CCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEe-CCceEEE
Confidence 322 22234556678999999988877766555555555531111111110 11122345567888776544 5677666
Q ss_pred EEccCCCCCceeeEEec-cCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCc
Q psy16316 175 YDVRSFDKGPFSNFKFA-AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK 253 (335)
Q Consensus 175 wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 253 (335)
.+... .......... ......+..+.+.+++..++++. ++.+ ++....++.-..+.........+..+.|.+++.
T Consensus 230 s~~D~--G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~ 305 (327)
T 2xbg_A 230 SDPDN--SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ 305 (327)
T ss_dssp EETTE--EEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE
T ss_pred ecCCC--CCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc
Confidence 53110 0011111100 01112356788988888777765 4444 344444443333322111223456788876555
Q ss_pred EEEEEeCCCcEEEEEC
Q psy16316 254 YVISGSTDGRIHIWNA 269 (335)
Q Consensus 254 ~l~tgs~dg~v~iwd~ 269 (335)
++.++.+|.|..++-
T Consensus 306 -~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 306 -GFILGQKGILLRYVT 320 (327)
T ss_dssp -EEEECSTTEEEEECC
T ss_pred -eEEEcCCceEEEEcC
Confidence 555667888777653
No 312
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.12 E-value=0.59 Score=40.36 Aligned_cols=56 Identities=9% Similarity=0.049 Sum_probs=27.0
Q ss_pred eEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC------cEEEEECCCCeeEE
Q psy16316 218 IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG------RIHIWNAEKGFKVC 276 (335)
Q Consensus 218 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg------~v~iwd~~~~~~~~ 276 (335)
.+.+||+.+.+.... ......... ..+...++++++.|+.++ .|.++++.+++...
T Consensus 286 ~~~~yd~~~~~W~~~-~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 286 STDIHLWHNGKWDKS-GELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp CCEEEECC---CEEE-EECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred eEEEEecCCCceeeC-CCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence 477899886643321 111111111 122335778888888653 35555776655443
No 313
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.05 E-value=0.069 Score=42.99 Aligned_cols=147 Identities=13% Similarity=0.100 Sum_probs=76.2
Q ss_pred CeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeE----EEe-cCC---cceEEECCCCCEEEEEEcCCeEEEEEccCC
Q psy16316 109 KVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGI----MHV-SGS---RPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180 (335)
Q Consensus 109 ~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~----~~~-~~~---~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~ 180 (335)
.+..++|+|++.+.+. .++.+.--+..+.....- .+. ... -..+.++|+|.+.++ .|+.|.-++..+.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 6669999998875444 677766666544322110 111 001 145789999999988 5688877765322
Q ss_pred CCCceee--EEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec--cccc--CCCCceEEEEcCCCcE
Q psy16316 181 DKGPFSN--FKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA--GFLN--NKGCPLEASFTPDSKY 254 (335)
Q Consensus 181 ~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~--~~~~v~~~~~sp~~~~ 254 (335)
....... .......=..+..+.++|+|.+-++. ++.++-....+.....-+. .... .-.....+.|.|++.+
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l 195 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL 195 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence 1111100 00000011245779999999987777 5555433333222111110 0000 0011223568888877
Q ss_pred EEEEeCCCc
Q psy16316 255 VISGSTDGR 263 (335)
Q Consensus 255 l~tgs~dg~ 263 (335)
++.- ++.
T Consensus 196 ~~v~--~g~ 202 (236)
T 1tl2_A 196 FGVQ--GGK 202 (236)
T ss_dssp EEEE--TTE
T ss_pred EEEe--CCe
Confidence 6665 563
No 314
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.03 E-value=0.76 Score=40.85 Aligned_cols=133 Identities=15% Similarity=0.184 Sum_probs=79.2
Q ss_pred CCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCc-cceEEEEccCCCEEEEEeCCCeEEEEECCCCee--------
Q psy16316 159 EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC-DWTGIKFSADGKYILISTNGSIIRTFDAYNGQC-------- 229 (335)
Q Consensus 159 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~-------- 229 (335)
++.-++.+ .++.||..++... ..+..++....... .+..+..+|+|++|+..+ ...|.+..+..+..
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~--~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTD--SLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTC--SSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred CCCEEEEE-ECCEEEEEECCCC--CcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 34333333 3467777776532 22323332211122 457799999999999874 55788888773211
Q ss_pred ----eeeecc--c-ccCCCCceEEEEcCCC---cEEEEEeCCCcEEEEECCCCe-eEEEeC--------CCCCCCeEEEE
Q psy16316 230 ----LQTLAG--F-LNNKGCPLEASFTPDS---KYVISGSTDGRIHIWNAEKGF-KVCVLD--------ADHPSPVQTIQ 290 (335)
Q Consensus 230 ----~~~~~~--~-~~~~~~v~~~~~sp~~---~~l~tgs~dg~v~iwd~~~~~-~~~~~~--------~~h~~~v~~v~ 290 (335)
.+.+.- . ......|..+.|||-+ ..|++-..|+.|++||+.... ++..+. ..+...|.+++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence 111111 0 0124568889999964 589999999999999998632 111221 12335788889
Q ss_pred eCCCC
Q psy16316 291 FNPKF 295 (335)
Q Consensus 291 ~sp~~ 295 (335)
|.+++
T Consensus 187 Fg~~~ 191 (452)
T 3pbp_A 187 FSKDG 191 (452)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 98865
No 315
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.95 E-value=0.63 Score=39.27 Aligned_cols=227 Identities=8% Similarity=0.080 Sum_probs=108.4
Q ss_pred CCCCCEEEEecCC----CeEEEEEccCCcceee--eecccccceEEEEecCCCeeEEeecCC---------CCeEEEEEc
Q psy16316 30 SADGLLLISCSED----DQIVIYDCELGTNKRT--VFSKKYGVDLIRFTHAKQAAIHASTKI---------DDTVRYLSL 94 (335)
Q Consensus 30 s~~g~~lasgs~D----g~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------d~~i~~~~~ 94 (335)
.-++.+++.||.+ ..+.+||..+.+-... ..........+.. ... ++..++. .+.+.+||+
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~-lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV---GGL-LYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTE-EEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE---CCE-EEEECCCcCCCCCCeecceEEEECC
Confidence 3466777777742 4678889877653221 1111111111211 222 3333332 245778888
Q ss_pred CCCceEee--ecCCCCCeEEEEECCCCCEEEEeeCC-----CcEEEeecCCCCceeEEEecCC---cceEEECCCCCEEE
Q psy16316 95 HDNKYIRY--FPGHTKKVNSLCLSPIDDTFISGSYD-----KTVRLWDLRSPNCQGIMHVSGS---RPIAAFDPEGLIFG 164 (335)
Q Consensus 95 ~~~~~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~D-----~~i~vWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 164 (335)
.+.+-.+. +..-...-.++.+ ++.+++.|+.+ ..+.++|+.+.+....-..... .....+ ++.+++
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv 173 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYA 173 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEE
T ss_pred CCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEE
Confidence 77653322 2211112222222 45677777654 3577888876543322111111 111222 566777
Q ss_pred EEEcC-----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-----CeEEEEECCCCeeeeeec
Q psy16316 165 VGVNS-----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-----SIIRTFDAYNGQCLQTLA 234 (335)
Q Consensus 165 ~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~ 234 (335)
.|+.+ ..+.+||+.+. .................+.+ ++..++.++.+ ..+.+||+.+.+.... .
T Consensus 174 ~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~ 247 (308)
T 1zgk_A 174 VGGFDGTNRLNSAECYYPERN---EWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFV-A 247 (308)
T ss_dssp ECCBCSSCBCCCEEEEETTTT---EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-C
T ss_pred EeCCCCCCcCceEEEEeCCCC---eEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC-C
Confidence 77643 45788887642 22222111111111122222 56666665443 4689999988754332 1
Q ss_pred ccccCCCCceEEEEcCCCcEEEEEeCC-----CcEEEEECCCC
Q psy16316 235 GFLNNKGCPLEASFTPDSKYVISGSTD-----GRIHIWNAEKG 272 (335)
Q Consensus 235 ~~~~~~~~v~~~~~sp~~~~l~tgs~d-----g~v~iwd~~~~ 272 (335)
......... .++. -++++++.|+.+ ..+.+||..+.
T Consensus 248 ~~p~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 248 PMKHRRSAL-GITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CCSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCCCccce-EEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 111111111 2222 367888888854 34778887654
No 316
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.90 E-value=0.12 Score=45.10 Aligned_cols=147 Identities=12% Similarity=0.130 Sum_probs=76.2
Q ss_pred eEEECCCCC-EEEEEEcCCeEEEEEccCCCCCceeeEE-eccCCCccceEEEEccC---CCEEEEEe-C-------CCeE
Q psy16316 153 IAAFDPEGL-IFGVGVNSDTIKLYDVRSFDKGPFSNFK-FAAEKECDWTGIKFSAD---GKYILIST-N-------GSII 219 (335)
Q Consensus 153 ~~~~~~~~~-~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~---~~~l~~~~-~-------~~~i 219 (335)
.+++.|+|+ ++++- ..+.|.+++............. ...........++++|+ +..|.++. . ...|
T Consensus 22 ~i~~~pdG~~l~V~e-~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v 100 (353)
T 2g8s_A 22 ALAFLPDNHGMLITL-RGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAV 100 (353)
T ss_dssp EEEECSTTCCEEEEE-TTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEE
T ss_pred EEEEcCCCCEEEEEe-CCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEE
Confidence 467899998 66554 5688988874321000111010 00111223478999996 55555442 2 2245
Q ss_pred EEEECCCC--e--eeeee-cccc---cCCCCceEEEEcCCCcEEEEEeCC-------------CcEEEEECCCC------
Q psy16316 220 RTFDAYNG--Q--CLQTL-AGFL---NNKGCPLEASFTPDSKYVISGSTD-------------GRIHIWNAEKG------ 272 (335)
Q Consensus 220 ~i~d~~~~--~--~~~~~-~~~~---~~~~~v~~~~~sp~~~~l~tgs~d-------------g~v~iwd~~~~------ 272 (335)
..|+.... . ..+.+ .... ........++|.|||.++++-+.. |+|..++....
T Consensus 101 ~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~np 180 (353)
T 2g8s_A 101 GYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNP 180 (353)
T ss_dssp EEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCT
T ss_pred EEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCC
Confidence 55655432 1 11111 1111 111224569999999877765442 46777775421
Q ss_pred ------eeEEEeCCCCCCCeEEEEeCC-CCcEEEee
Q psy16316 273 ------FKVCVLDADHPSPVQTIQFNP-KFNMMASA 301 (335)
Q Consensus 273 ------~~~~~~~~~h~~~v~~v~~sp-~~~~~~s~ 301 (335)
........+|.. ...++|+| ++.+.++-
T Consensus 181 f~~~~~~~~~i~a~G~rn-p~gl~~d~~~g~l~~~d 215 (353)
T 2g8s_A 181 FIKESGVRAEIWSYGIRN-PQGMAMNPWSNALWLNE 215 (353)
T ss_dssp TTTSTTSCTTEEEECCSE-EEEEEEETTTTEEEEEE
T ss_pred CcCCCCCCccEEEEcCcC-ccceEEECCCCCEEEEe
Confidence 011122234543 46899999 67766654
No 317
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.87 E-value=0.16 Score=44.20 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=59.3
Q ss_pred eEEEEccCCCEEEEEeCCCeEEEEECCCCee--eeeecccccCCCCceEEEEcCC----CcEEEEEeCC-----CcEEEE
Q psy16316 199 TGIKFSADGKYILISTNGSIIRTFDAYNGQC--LQTLAGFLNNKGCPLEASFTPD----SKYVISGSTD-----GRIHIW 267 (335)
Q Consensus 199 ~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~sp~----~~~l~tgs~d-----g~v~iw 267 (335)
.+++|.|+|++++ +..++.|++++ +++. +..+.........+..++|+|+ +.++++-+.+ ..|..|
T Consensus 34 ~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~ 110 (352)
T 2ism_A 34 WALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL 110 (352)
T ss_dssp EEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred eEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence 5799999999555 45668899988 4432 1111111112345788999998 4555555433 678888
Q ss_pred ECCCCe-----eEE-EeC----CCCCCCeEEEEeCCCCcEEEee
Q psy16316 268 NAEKGF-----KVC-VLD----ADHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 268 d~~~~~-----~~~-~~~----~~h~~~v~~v~~sp~~~~~~s~ 301 (335)
+...+. .+. .++ ..|. -..++|.|+|.+.++.
T Consensus 111 ~~~~~~~~~~~~l~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 111 RHLGERGVLDRVVLDGIPARPHGLHS--GGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EECSSCEEEEEEEEEEECCCTTCCCC--CCCEEECTTSCEEEEC
T ss_pred EeCCCCcCceEEEEEeCCCCCCCCcC--CceEEECCCCCEEEEE
Confidence 876431 111 133 1132 3589999999877764
No 318
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.82 E-value=0.73 Score=39.01 Aligned_cols=225 Identities=11% Similarity=0.128 Sum_probs=102.7
Q ss_pred EEEEecCCCeEEEEEccCCcceeeeec-ccccceEEEEecCCCeeEEeecC------CC----CeEEEEEcCCCceEee-
Q psy16316 35 LLISCSEDDQIVIYDCELGTNKRTVFS-KKYGVDLIRFTHAKQAAIHASTK------ID----DTVRYLSLHDNKYIRY- 102 (335)
Q Consensus 35 ~lasgs~Dg~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~d----~~i~~~~~~~~~~~~~- 102 (335)
+++.|+ ..+.+||..+.+-...-.. ............ .+..++..+. .. ..+..||+.+++-...
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 455566 5788999988764321110 001111111122 2233333321 11 2266788877653321
Q ss_pred -ecCCCCCeEEEEECCCCCEEEEeeCC--------CcEEEeecCCCCceeEEEecCCc-ceEEECCCCCEEEEEEc----
Q psy16316 103 -FPGHTKKVNSLCLSPIDDTFISGSYD--------KTVRLWDLRSPNCQGIMHVSGSR-PIAAFDPEGLIFGVGVN---- 168 (335)
Q Consensus 103 -~~~H~~~V~~~~~~~~~~~l~s~s~D--------~~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 168 (335)
++.....-..+.+ ++..++.|+.+ ..+.++|..+.+....-...... ...+...++.+++.|+.
T Consensus 84 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 84 PLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDR 161 (315)
T ss_dssp CBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTS
T ss_pred CCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCC
Confidence 1111111112222 45667777743 45788888765432211111111 11112235667777765
Q ss_pred --CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCC-----eEEEEECCCCeeeeeecccccCCC
Q psy16316 169 --SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS-----IIRTFDAYNGQCLQTLAGFLNNKG 241 (335)
Q Consensus 169 --d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~-----~i~i~d~~~~~~~~~~~~~~~~~~ 241 (335)
-..+.+||+.+. .................+ ..+++.++.|+.++ .+.+||+.+.+.... ........
T Consensus 162 ~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~ 235 (315)
T 4asc_A 162 KCLNKMCVYDPKKF---EWKELAPMQTARSLFGAT--VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF-EAFPQERS 235 (315)
T ss_dssp CBCCCEEEEETTTT---EEEECCCCSSCCBSCEEE--EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEE-CCCSSCCB
T ss_pred cccceEEEEeCCCC---eEEECCCCCCchhceEEE--EECCEEEEEeccCCCCccceEEEEECCCCeEEEC-CCCCCccc
Confidence 246888887642 222221111111111122 22566666665432 588999988754332 11111111
Q ss_pred CceEEEEcCCCcEEEEEeCCC--------------cEEEEECCCC
Q psy16316 242 CPLEASFTPDSKYVISGSTDG--------------RIHIWNAEKG 272 (335)
Q Consensus 242 ~v~~~~~sp~~~~l~tgs~dg--------------~v~iwd~~~~ 272 (335)
.. .++ .-++++++.|+.++ .+.+||..+.
T Consensus 236 ~~-~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 236 SL-SLV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp SC-EEE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred ce-eEE-EECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 11 122 23678888888642 3677787654
No 319
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.72 E-value=0.86 Score=39.05 Aligned_cols=198 Identities=14% Similarity=0.248 Sum_probs=116.6
Q ss_pred EEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC-CceEeeecC
Q psy16316 27 IDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD-NKYIRYFPG 105 (335)
Q Consensus 27 v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~ 105 (335)
.-.+|..+.+|-=. ..++.|+|+++...++...-.+ .|.-=+|-.+....++ + +..|..|+++. ..+.+.+.-
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lV-T---~taVyHWs~~~~s~P~kvFdR 145 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-T---DNAVYHWSMEGESQPVKMFDR 145 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CEEEEEECSSSEEEEE-E---SSEEEEEESSTTCCCEEEEEC
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC-ccEEEEecCCCeEEEE-c---CCcEEEEcccCCCCCceeeec
Confidence 34588888777655 6899999999887666543322 2222233333332222 2 57899999974 456666655
Q ss_pred CC----CCeEEEEECCCCCEEEEee-------CCCcEEEeecCCCCceeEEEecCCcceEEECCCC-----CEEEEEEc-
Q psy16316 106 HT----KKVNSLCLSPIDDTFISGS-------YDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEG-----LIFGVGVN- 168 (335)
Q Consensus 106 H~----~~V~~~~~~~~~~~l~s~s-------~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~- 168 (335)
|. ..|..-..+++.++++-.+ -.|.+.++....+..+.. .++......+..+| ++++.+..
T Consensus 146 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~i--eGhaa~F~~~~~~g~~~~~~lf~fa~r~ 223 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI--EGHAASFAQFKMEGNAEESTLFCFAVRG 223 (365)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEE--CCSEEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred chhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccccee--eeeeeeeEEEecCCCCCCceEEEEEEec
Confidence 53 4567777788888654433 236667887765443221 11111122232222 24444433
Q ss_pred --CCeEEEEEccCC-CCCcee-----eEEeccCCCccc-eEEEEccCCCEEEEEeCCCeEEEEECCCCeeeee
Q psy16316 169 --SDTIKLYDVRSF-DKGPFS-----NFKFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQT 232 (335)
Q Consensus 169 --d~~v~iwd~~~~-~~~~~~-----~~~~~~~~~~~~-~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 232 (335)
.+.+++.++... ...+.. ...+..+...++ -++..|+....+..-+.-|.+.+||++++.++..
T Consensus 224 ~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~ 296 (365)
T 2xzh_A 224 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 296 (365)
T ss_dssp TTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEE
Confidence 258999998543 111111 111223322222 3578899999999999999999999999988754
No 320
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.63 E-value=0.83 Score=38.26 Aligned_cols=177 Identities=14% Similarity=0.164 Sum_probs=88.6
Q ss_pred CeEEEEEcCCCceEee--ecCCCCCeEEEEECCCCCEEEEeeCC-----CcEEEeecCCCC---ceeEEEecCCc-ceEE
Q psy16316 87 DTVRYLSLHDNKYIRY--FPGHTKKVNSLCLSPIDDTFISGSYD-----KTVRLWDLRSPN---CQGIMHVSGSR-PIAA 155 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~D-----~~i~vWd~~~~~---~~~~~~~~~~~-~~~~ 155 (335)
..+..||+.+.+-... ++.....-..+. .++.+++.|+.+ ..+.++|+.+.. ....-...... ...+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 4567778776643321 221111112222 245677777765 468899988766 33221111111 1111
Q ss_pred ECCCCCEEEEEEcC-----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-----CeEEEEECC
Q psy16316 156 FDPEGLIFGVGVNS-----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-----SIIRTFDAY 225 (335)
Q Consensus 156 ~~~~~~~~~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-----~~i~i~d~~ 225 (335)
...++.+++.|+.+ ..+.+||+.+. .................+. .+++.++.|+.+ ..+..||+.
T Consensus 109 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~ 183 (301)
T 2vpj_A 109 TTLGDMIYVSGGFDGSRRHTSMERYDPNID---QWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPH 183 (301)
T ss_dssp EEETTEEEEECCBCSSCBCCEEEEEETTTT---EEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETT
T ss_pred EEECCEEEEEcccCCCcccceEEEEcCCCC---eEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCC
Confidence 11256677777643 36788887642 2333322222111112222 256666665433 458899988
Q ss_pred CCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC-----CcEEEEECCCCe
Q psy16316 226 NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD-----GRIHIWNAEKGF 273 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d-----g~v~iwd~~~~~ 273 (335)
+.+.... ........... + ...++++++.|+.+ ..+.+||..+..
T Consensus 184 ~~~W~~~-~~~p~~r~~~~-~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 184 TGHWTNV-TPMATKRSGAG-V-ALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp TTEEEEE-CCCSSCCBSCE-E-EEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCcEEeC-CCCCcccccce-E-EEECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 7754332 11111111111 2 22367888888875 468999988664
No 321
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.56 E-value=1.3 Score=39.99 Aligned_cols=108 Identities=15% Similarity=0.176 Sum_probs=57.9
Q ss_pred CCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCC---------cceEEECC----CCCEEEEEEc-----
Q psy16316 107 TKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGS---------RPIAAFDP----EGLIFGVGVN----- 168 (335)
Q Consensus 107 ~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~---------~~~~~~~~----~~~~~~~~~~----- 168 (335)
-...++++|.|+|+++++--..+.|++++...+....+...... ..-++++| ++.++++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 34567999999999888765445788887655544333222211 12478898 4555554432
Q ss_pred -------CCeEEEEEccCCCCC---ceeeEE-eccCCCccceEEEEccCCCEEEEEe
Q psy16316 169 -------SDTIKLYDVRSFDKG---PFSNFK-FAAEKECDWTGIKFSADGKYILIST 214 (335)
Q Consensus 169 -------d~~v~iwd~~~~~~~---~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~ 214 (335)
...|.-++....... ....+. ...........++|.|||.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 234555554321110 001111 1111112246799999998666543
No 322
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.26 E-value=1.1 Score=37.52 Aligned_cols=177 Identities=13% Similarity=0.214 Sum_probs=88.6
Q ss_pred CCeEEEEEcCCCceEee--ecCCCCCeEEEEECCCCCEEEEeeCC----CcEEEeecCCCCceeEEEecCCc-ceEEECC
Q psy16316 86 DDTVRYLSLHDNKYIRY--FPGHTKKVNSLCLSPIDDTFISGSYD----KTVRLWDLRSPNCQGIMHVSGSR-PIAAFDP 158 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~D----~~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~ 158 (335)
.+.+..||..+++-... +......-..+.+ ++.+++.|+.+ ..+.++|+.+.+....-...... ...+...
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 100 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA 100 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE
T ss_pred CceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE
Confidence 45678888877653322 2211112222222 45677778765 67788898876543322111111 1111122
Q ss_pred CCCEEEEEEcC------CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC---------CCeEEEEE
Q psy16316 159 EGLIFGVGVNS------DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN---------GSIIRTFD 223 (335)
Q Consensus 159 ~~~~~~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---------~~~i~i~d 223 (335)
++.+++.|+.+ ..+.+||+.+. .................+. .+++..+.++. -..+.+||
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd 175 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTE---SWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYD 175 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTT---EEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEE
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCC---ceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeC
Confidence 56677777654 45888887642 2222221111111111222 35555555532 34588999
Q ss_pred CCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC-----CcEEEEECCCC
Q psy16316 224 AYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD-----GRIHIWNAEKG 272 (335)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d-----g~v~iwd~~~~ 272 (335)
+.+.+.... .......... .++. -++++++.|+.+ ..+.+||..+.
T Consensus 176 ~~~~~W~~~-~~~p~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 176 PATETWTEL-CPMIEARKNH-GLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp TTTTEEEEE-CCCSSCCBSC-EEEE-ETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CCCCeEEEC-CCccchhhcc-eEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 988754322 1111111111 1222 267888888764 35889998765
No 323
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.93 E-value=1.9 Score=38.45 Aligned_cols=198 Identities=15% Similarity=0.284 Sum_probs=118.8
Q ss_pred EEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC-CceEeeecC
Q psy16316 27 IDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD-NKYIRYFPG 105 (335)
Q Consensus 27 v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~ 105 (335)
.-.+|..+.+|-=. ..++.|+|+++...++...-.. .|.-=+|-.+....++ + +..|..|+++. ..+.+.+.-
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lV-T---~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-T---DNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEE-C---SSEEEEEESSSSCCCEEEEEC
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEE-c---CCeeEEecccCCCCchhheec
Confidence 44677787777654 6899999999887766544333 3333344443333333 2 67899999974 356666655
Q ss_pred CC----CCeEEEEECCCCCEEEEee-------CCCcEEEeecCCCCceeEEEecCCcceEEECCCC-----CEEEEEEc-
Q psy16316 106 HT----KKVNSLCLSPIDDTFISGS-------YDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEG-----LIFGVGVN- 168 (335)
Q Consensus 106 H~----~~V~~~~~~~~~~~l~s~s-------~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~- 168 (335)
|. ..|..-..+++.++++-.+ -.|.+.++....+..+... ++......+..+| ++++.+..
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE--GHAASFAQFKMEGNAEESTLFCFAVRG 222 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEEC--CSEEEEEEEECTTCSSEEEEEEEEECS
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchhe--eeeeeeEEEecCCCCCCceEEEEEEec
Confidence 53 4577777788888765432 2466778887765443211 1111112222222 24444443
Q ss_pred --CCeEEEEEccCC-CCC-cee----eEEeccCCCccc-eEEEEccCCCEEEEEeCCCeEEEEECCCCeeeee
Q psy16316 169 --SDTIKLYDVRSF-DKG-PFS----NFKFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQT 232 (335)
Q Consensus 169 --d~~v~iwd~~~~-~~~-~~~----~~~~~~~~~~~~-~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 232 (335)
.+.+++.++... ... +.. ...+..+...++ -++..|+....+..-+.-|.+.+||++++.++..
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeee
Confidence 278999998643 111 111 111222222222 3588899999999999999999999999988754
No 324
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.90 E-value=1.5 Score=45.04 Aligned_cols=195 Identities=14% Similarity=0.241 Sum_probs=109.4
Q ss_pred ECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC-CceEeeecCC-
Q psy16316 29 YSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD-NKYIRYFPGH- 106 (335)
Q Consensus 29 ~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~H- 106 (335)
.+|..+.+|-=+ ..++.|+|+++...++...-.. .|.-=+|..+....++ + +..|..|++.. ..+.+.+.-|
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lV--T--~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV--T--DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEE--c--CCeEEEeccCCCCccHHHHhcch
Confidence 466777666554 6899999998876655432222 2222233333332222 2 57899999964 3455555545
Q ss_pred ---CCCeEEEEECCCCCEEEEee-------CCCcEEEeecCCCCceeEEEecCCcceEEE-----CCCCCEEEEEEc---
Q psy16316 107 ---TKKVNSLCLSPIDDTFISGS-------YDKTVRLWDLRSPNCQGIMHVSGSRPIAAF-----DPEGLIFGVGVN--- 168 (335)
Q Consensus 107 ---~~~V~~~~~~~~~~~l~s~s-------~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--- 168 (335)
...|..-..+++.++++-.| -.|.+.++....+..+..-.+.+ ....+ .+..++++.+..
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~--~F~~~~~~~~~~~~~l~~f~~~~~~ 224 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAA--SFAQFKMEGNAEESTLFCFAVRGQA 224 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHh--hhheeccCCCCCCceEEEEEEecCC
Confidence 35677777788887765332 35777788776544322111100 00111 112234443332
Q ss_pred CCeEEEEEccCC-CCCceee-----EEeccCCCccc-eEEEEccCCCEEEEEeCCCeEEEEECCCCeeee
Q psy16316 169 SDTIKLYDVRSF-DKGPFSN-----FKFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQ 231 (335)
Q Consensus 169 d~~v~iwd~~~~-~~~~~~~-----~~~~~~~~~~~-~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~ 231 (335)
.+.++|.++... .+.+... ..+..+....+ -++..|+....+..-+.-|.+.+||++++.++.
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred CceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 368999988643 1111110 11111111111 357788888889999999999999999998764
No 325
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.85 E-value=1.6 Score=36.97 Aligned_cols=174 Identities=10% Similarity=0.160 Sum_probs=82.1
Q ss_pred EEEEEcCCCceEee--ecCCCCCeEEEEECCCCCEEEEeeCC-------CcEEEeecCCCCceeEEEecCCc-ceEEECC
Q psy16316 89 VRYLSLHDNKYIRY--FPGHTKKVNSLCLSPIDDTFISGSYD-------KTVRLWDLRSPNCQGIMHVSGSR-PIAAFDP 158 (335)
Q Consensus 89 i~~~~~~~~~~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~D-------~~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~ 158 (335)
+..+|+.+.+-... ++.-...-..+.+ ++..++.|+.+ ..+.++|+.+.+....-...... ...+...
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 157 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH 157 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE
Confidence 66788876654332 2211111112222 45677777764 34778888765433221111110 0011124
Q ss_pred CCCEEEEEEc------CCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-----CeEEEEECCCC
Q psy16316 159 EGLIFGVGVN------SDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-----SIIRTFDAYNG 227 (335)
Q Consensus 159 ~~~~~~~~~~------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-----~~i~i~d~~~~ 227 (335)
++.+++.|+. ...+.+||+.+. .................+. -++..++.|+.+ ..+.+||+.+.
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKG---DWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTT---EEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCC---EEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCC
Confidence 5667777653 235888888642 2332221111111112222 255666665432 34778998876
Q ss_pred eeeeeecccccCCCCceEEEEcCCCcEEEEEeCC--------------CcEEEEECCCC
Q psy16316 228 QCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD--------------GRIHIWNAEKG 272 (335)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d--------------g~v~iwd~~~~ 272 (335)
+... +.......... .+ ...++++++.|+.+ ..+.+||..+.
T Consensus 233 ~W~~-~~~~p~~r~~~-~~-~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 233 KWEV-MTEFPQERSSI-SL-VSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp CEEE-CCCCSSCCBSC-EE-EEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred eEEE-CCCCCCcccce-EE-EEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 5432 21111111111 12 22357788888764 34777777654
No 326
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=94.84 E-value=3.9 Score=41.54 Aligned_cols=210 Identities=10% Similarity=0.115 Sum_probs=107.1
Q ss_pred CCeEEEEEcCCCceEeee-cCCCCCeEEEEECCC------CCEEEEeeC-CCcEEEeecCCCCceeEEEecC--C---cc
Q psy16316 86 DDTVRYLSLHDNKYIRYF-PGHTKKVNSLCLSPI------DDTFISGSY-DKTVRLWDLRSPNCQGIMHVSG--S---RP 152 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~~-~~H~~~V~~~~~~~~------~~~l~s~s~-D~~i~vWd~~~~~~~~~~~~~~--~---~~ 152 (335)
++.+.++.++.++..... ..-...|.|+++.|. ++.++-|.+ |+++++.++...+......... . ..
T Consensus 531 g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~ 610 (1158)
T 3ei3_A 531 GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSIL 610 (1158)
T ss_dssp TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEE
T ss_pred CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEE
Confidence 467777777655332211 112457999999763 368888887 9999999998655443333322 1 11
Q ss_pred eEEECCCCCEEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeee
Q psy16316 153 IAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQT 232 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 232 (335)
+..+ ....++.+|..||.+.-+.+... .+.....+...-...++.=..+...+..-+.++.++-..+|.....-....
T Consensus 611 l~~~-~~~~~L~igl~dG~l~~~~~d~~-tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~ 688 (1158)
T 3ei3_A 611 MTTF-ESSHYLLCALGDGALFYFGLNIE-TGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSN 688 (1158)
T ss_dssp EEEE-TTEEEEEEEETTSEEEEEEECTT-TCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEE
T ss_pred EEEe-CCCcEEEEEeCCCeEEEEEEcCC-CCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEec
Confidence 2233 23457788989998877766532 122222211110112222222333343333333344333343332111111
Q ss_pred ecccccCCCCceEEEEcCC--CcEEEEEeCCCcEEEEECCCC--eeEEEeCCCCCCCeEEEEeCCCCcEEEeeece
Q psy16316 233 LAGFLNNKGCPLEASFTPD--SKYVISGSTDGRIHIWNAEKG--FKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304 (335)
Q Consensus 233 ~~~~~~~~~~v~~~~~sp~--~~~l~tgs~dg~v~iwd~~~~--~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~~~ 304 (335)
+ ....--....|+.. ..-++..+ ++.++|..+.+- .....++. ......++++|..+.++.+...
T Consensus 689 l----~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL--~~Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 689 V----NLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPL--YESPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp B----SSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEEC--SSEEEEEEEEGGGTEEEEEEEE
T ss_pred c----ChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeC--CCCceEEEEcCCCCEEEEEEEe
Confidence 1 11111122345432 12344444 455999887543 33344444 3578999999998877666543
No 327
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.78 E-value=1.8 Score=37.32 Aligned_cols=191 Identities=10% Similarity=0.056 Sum_probs=99.7
Q ss_pred CEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEe-cC--CCeeEEee-cCCCCeEEEEEcCCCceEeeecC----
Q psy16316 34 LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFT-HA--KQAAIHAS-TKIDDTVRYLSLHDNKYIRYFPG---- 105 (335)
Q Consensus 34 ~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~-~~~d~~i~~~~~~~~~~~~~~~~---- 105 (335)
.+++.++.||.|.-.|.++|+....+..... ...+... +. ....+++. ...|+.+..++..++.....+.-
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~-~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENF-QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGS-CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCcc-CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 4688899999999999999988877654310 1111111 10 11123333 35789998888877743322211
Q ss_pred CCCCeEEEE----E-----CCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcc--------eEE---E--CCCCCEE
Q psy16316 106 HTKKVNSLC----L-----SPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRP--------IAA---F--DPEGLIF 163 (335)
Q Consensus 106 H~~~V~~~~----~-----~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~--------~~~---~--~~~~~~~ 163 (335)
...++.. . + ...+..+.+|+.++.+.-.|+++++....+....... +.. + ...+..+
T Consensus 90 ~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 90 STSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp TTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred ecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 1122221 0 0 0145688999999999999999998877664432211 111 1 0113455
Q ss_pred EEEEcCCeEEEEEccCCCCCcee-eEEeccCCCcc--c-eEEEEccCCCEEEEEeCCCeEEEEECCCCeee
Q psy16316 164 GVGVNSDTIKLYDVRSFDKGPFS-NFKFAAEKECD--W-TGIKFSADGKYILISTNGSIIRTFDAYNGQCL 230 (335)
Q Consensus 164 ~~~~~d~~v~iwd~~~~~~~~~~-~~~~~~~~~~~--~-~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~ 230 (335)
..+..+..+.+.+ ++.+ .+. .+......... + .+-..+.|+.+ +.++.++.|.-+|..+|+..
T Consensus 169 ~ig~~~y~v~~~~-~sG~--~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~ 235 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGA--SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIAR 235 (339)
T ss_dssp EEEEEEEECEECC-TTSC--CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEE
T ss_pred EEecceEEEEEEC-CCCC--eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEE
Confidence 5565555555544 2211 110 01000000000 0 00011234666 45678889999998888754
No 328
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.75 E-value=0.65 Score=41.96 Aligned_cols=103 Identities=14% Similarity=0.190 Sum_probs=60.1
Q ss_pred eEEEEccCCCEEEEEeCCCeEEEEECCCCeeee--eecccc---cCCCCceEEEEcC----CCcEEEEEeC---------
Q psy16316 199 TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQ--TLAGFL---NNKGCPLEASFTP----DSKYVISGST--------- 260 (335)
Q Consensus 199 ~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~--~~~~~~---~~~~~v~~~~~sp----~~~~l~tgs~--------- 260 (335)
.+|+|.|+|+++++...++.|++++..+++... .+.... ....-...++|+| ++.++++-+.
T Consensus 30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~ 109 (454)
T 1cru_A 30 HALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKE 109 (454)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CC
T ss_pred eEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccc
Confidence 579999999987776655678888866554321 221111 1123456899999 4555555543
Q ss_pred ---CCcEEEEECCCC------ee-EE-EeCCCCCCCeEEEEeCCCCcEEEee
Q psy16316 261 ---DGRIHIWNAEKG------FK-VC-VLDADHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 261 ---dg~v~iwd~~~~------~~-~~-~~~~~h~~~v~~v~~sp~~~~~~s~ 301 (335)
...|..|+...+ .+ +. .++......-..++|.|+|.+.++.
T Consensus 110 ~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 110 LPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp SCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE
T ss_pred cccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEE
Confidence 235666665321 11 11 1222111245899999999876654
No 329
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.96 E-value=2.8 Score=40.08 Aligned_cols=183 Identities=14% Similarity=0.128 Sum_probs=92.1
Q ss_pred CeEEEEEcCCCceEeee-c-------CCCCCeEEEEECC-CCCEEEEeeCCC------cEEEeecCCCCceeEEEec--C
Q psy16316 87 DTVRYLSLHDNKYIRYF-P-------GHTKKVNSLCLSP-IDDTFISGSYDK------TVRLWDLRSPNCQGIMHVS--G 149 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~~-~-------~H~~~V~~~~~~~-~~~~l~s~s~D~------~i~vWd~~~~~~~~~~~~~--~ 149 (335)
+.+.+||+.+++-...- . .-... .+++..+ ++..++.||.++ .+.++|..+......-... .
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R 490 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTR 490 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCC
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCc
Confidence 45778888776543322 1 11111 2333333 667778887543 4678888765433221111 1
Q ss_pred CcceEEECCCCCEEEEEEcCC--eEEEEEccCCCCCceeeEEe---ccCCCccceEEEEccC-CCEEEEEeC--C-----
Q psy16316 150 SRPIAAFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKF---AAEKECDWTGIKFSAD-GKYILISTN--G----- 216 (335)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~-~~~l~~~~~--~----- 216 (335)
.....+.-.++.+++.|+.++ .+.+||+.+. .+..... ..........+.+..+ +..++.|+. +
T Consensus 491 ~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~---~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~ 567 (695)
T 2zwa_A 491 FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE---IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVS 567 (695)
T ss_dssp BSCEEEECTTSCEEEECCBCSSCSEEEEETTTT---EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBC
T ss_pred ccceEEEEcCCEEEEECCCCCCCCEEEEECCCC---ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeee
Confidence 111233324778888887654 6888888652 2322221 1111111233555555 555565543 1
Q ss_pred CeEEEEECCCCee-----eeeecccccCCCCceEEEEcCCCcEEEEEeCC--------CcEEEEECCCCe
Q psy16316 217 SIIRTFDAYNGQC-----LQTLAGFLNNKGCPLEASFTPDSKYVISGSTD--------GRIHIWNAEKGF 273 (335)
Q Consensus 217 ~~i~i~d~~~~~~-----~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d--------g~v~iwd~~~~~ 273 (335)
..+..||+.+.+. -..+.........-..++...++++++.||.+ ..+.+||..+..
T Consensus 568 ~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 568 DKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp CEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred CcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 4588999887761 11221110011111123333447888888853 459999988653
No 330
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.91 E-value=2.5 Score=35.49 Aligned_cols=177 Identities=8% Similarity=0.085 Sum_probs=84.3
Q ss_pred CeEEEEEcCCCceEee--ecCCCCCeEEEEECCCCCEEEEeeC----C-----CcEEEeecCCCCceeEEEecCCc-ceE
Q psy16316 87 DTVRYLSLHDNKYIRY--FPGHTKKVNSLCLSPIDDTFISGSY----D-----KTVRLWDLRSPNCQGIMHVSGSR-PIA 154 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~----D-----~~i~vWd~~~~~~~~~~~~~~~~-~~~ 154 (335)
..+.++|+.+.+-... ++.-...- ++... ++.+++.|+. + ..+.++|+.+.+....-...... ...
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 116 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 116 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence 4567778776543322 11111111 12222 4567777765 2 46788888765433221111110 011
Q ss_pred EECCCCCEEEEEEcC-----CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeCC-----CeEEEEEC
Q psy16316 155 AFDPEGLIFGVGVNS-----DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-----SIIRTFDA 224 (335)
Q Consensus 155 ~~~~~~~~~~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~-----~~i~i~d~ 224 (335)
....++.+++.|+.+ ..+.+||+.+. .................+.+ ++..++.|+.+ ..+..||+
T Consensus 117 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~ 191 (308)
T 1zgk_A 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERD---EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYP 191 (308)
T ss_dssp EEEETTEEEEECCEETTEECCCEEEEETTTT---EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEET
T ss_pred EEEECCEEEEEcCCCCCcccccEEEECCCCC---eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeC
Confidence 111256677776532 35778887642 12222111111111122222 55555555432 45889998
Q ss_pred CCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCC-----CcEEEEECCCCe
Q psy16316 225 YNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD-----GRIHIWNAEKGF 273 (335)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~d-----g~v~iwd~~~~~ 273 (335)
.+.+.... ............+.+ ++++++.|+.+ ..+.+||..+..
T Consensus 192 ~~~~W~~~-~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 192 ERNEWRMI-TAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp TTTEEEEC-CCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCeEeeC-CCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 87754322 111111111112222 67888888865 459999987653
No 331
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=93.76 E-value=3.1 Score=36.03 Aligned_cols=229 Identities=12% Similarity=0.101 Sum_probs=117.1
Q ss_pred cceEEEEecCCCeeEEeecCCCCeEEEEEcCCCc-eEeeec---CCCCCeEEEEECCC----CCEEEEeeC---C----C
Q psy16316 65 GVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK-YIRYFP---GHTKKVNSLCLSPI----DDTFISGSY---D----K 129 (335)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~---~H~~~V~~~~~~~~----~~~l~s~s~---D----~ 129 (335)
....++|.+++. ++.+. .++.|++++. .++ .+..+. ........++++|+ +.+.++-+. + .
T Consensus 30 ~P~~ia~~pdG~--l~V~e-~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 30 VPWSIAPLGGGR--YLVTE-RPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CEEEEEEEETTE--EEEEE-TTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCeEEEEcCCCe--EEEEe-CCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 345567776653 33332 2477877763 333 222221 22356889999997 444454432 3 5
Q ss_pred cEEEeecCCC--Cc---eeEEE-ec----CCcceEEECCCCCEEEEEEcC-------------CeEEEEEccCC--CCCc
Q psy16316 130 TVRLWDLRSP--NC---QGIMH-VS----GSRPIAAFDPEGLIFGVGVNS-------------DTIKLYDVRSF--DKGP 184 (335)
Q Consensus 130 ~i~vWd~~~~--~~---~~~~~-~~----~~~~~~~~~~~~~~~~~~~~d-------------~~v~iwd~~~~--~~~~ 184 (335)
.|..|+.... .. ..++. .. +....+.|.|+|.++++-+.. +.|.-++.... ...+
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6777877643 11 11111 11 122457899999888774331 34444444320 0000
Q ss_pred ---eeeEEeccCCCccceEEEEcc-CCCEEEEEeCCC---eEEEEECCCCeee---------------eeecccccCCCC
Q psy16316 185 ---FSNFKFAAEKECDWTGIKFSA-DGKYILISTNGS---IIRTFDAYNGQCL---------------QTLAGFLNNKGC 242 (335)
Q Consensus 185 ---~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~~~---~i~i~d~~~~~~~---------------~~~~~~~~~~~~ 242 (335)
...+. ... ....+++|+| ++.++++-.... .|.+.. .+... ..+.........
T Consensus 186 f~~~~i~a--~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~a 260 (354)
T 3a9g_A 186 FPNSPIWS--YGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWA 260 (354)
T ss_dssp STTCCEEE--ECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCC
T ss_pred CCCCcEEE--Ecc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcC
Confidence 01111 111 1235799999 666555433221 244432 12100 000000011234
Q ss_pred ceEEEE-------cCCCcEEEEEeCCCcEEEEECCCC-ee--EEEeCCCCCCCeEEEEeCCCCcEEEeee
Q psy16316 243 PLEASF-------TPDSKYVISGSTDGRIHIWNAEKG-FK--VCVLDADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 243 v~~~~~-------sp~~~~l~tgs~dg~v~iwd~~~~-~~--~~~~~~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
+..++| ..+|.++++.-..+.|...++... .. ...+...-...+.++++.|+|.+.++..
T Consensus 261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 567777 357778887777788999888742 21 1223222245789999999998777664
No 332
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.68 E-value=3.2 Score=35.91 Aligned_cols=151 Identities=13% Similarity=0.092 Sum_probs=79.1
Q ss_pred CCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec-------CCcceEEECCC----CCEEEEEE--cCCe
Q psy16316 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS-------GSRPIAAFDPE----GLIFGVGV--NSDT 171 (335)
Q Consensus 105 ~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-------~~~~~~~~~~~----~~~~~~~~--~d~~ 171 (335)
..-..-+.++|.|+|.++++--..|.|++++...+....+.... +...-++++|+ +.++++-+ .++.
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 34456789999999998887766899999986655543222211 11234688885 55554322 3445
Q ss_pred EEEEEccCCC----C--CceeeEE-eccCCCccceEEEEccCCCEEEEEeC-------------CCeEEEEECCCCe---
Q psy16316 172 IKLYDVRSFD----K--GPFSNFK-FAAEKECDWTGIKFSADGKYILISTN-------------GSIIRTFDAYNGQ--- 228 (335)
Q Consensus 172 v~iwd~~~~~----~--~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~-------------~~~i~i~d~~~~~--- 228 (335)
|.-|.+.... . .....+. ...........+.|.|||.+.++.++ .+.|.-++....-
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 5556554311 0 0111111 11111112356999999976655332 2334334443210
Q ss_pred ----eeeeecccccCCCCceEEEEcCCCcEEEEE
Q psy16316 229 ----CLQTLAGFLNNKGCPLEASFTPDSKYVISG 258 (335)
Q Consensus 229 ----~~~~~~~~~~~~~~v~~~~~sp~~~~l~tg 258 (335)
....+. .++ ..+..++|+|+|.++++-
T Consensus 189 nPf~~~~i~a--~G~-RNp~Gla~dp~G~L~~~d 219 (347)
T 3das_A 189 NPFPGSPVYS--YGH-RNVQGLAWDDKQRLFASE 219 (347)
T ss_dssp CSSTTCCEEE--BCC-SBCCEEEECTTCCEEEEE
T ss_pred CCCCCCeEEe--eCC-CCcceEEECCCCCEEEEe
Confidence 001111 111 225679999998877664
No 333
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.46 E-value=3.4 Score=35.67 Aligned_cols=243 Identities=12% Similarity=0.129 Sum_probs=120.5
Q ss_pred eeeccCCccEEEEEECCCCCEEEEecCCCeEEEEEccCCccee--ee----ecccccceEEEEecC--CCeeEEe--ecC
Q psy16316 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR--TV----FSKKYGVDLIRFTHA--KQAAIHA--STK 84 (335)
Q Consensus 15 ~~~~~h~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~--~~----~~~~~~~~~~~~~~~--~~~~~~~--~~~ 84 (335)
+++-.--.....++|.|||.++++--..|.|++++...+.... .+ .....+...+++.++ .+..+++ +..
T Consensus 25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 3444445667899999999988888778999999876554321 11 122345677888775 2233332 222
Q ss_pred CCCeEEEEEcCCC----------ceE-eeec-CCCCCeEEEEECCCCCEEEEeeC-------------CCcEEEeecCCC
Q psy16316 85 IDDTVRYLSLHDN----------KYI-RYFP-GHTKKVNSLCLSPIDDTFISGSY-------------DKTVRLWDLRSP 139 (335)
Q Consensus 85 ~d~~i~~~~~~~~----------~~~-~~~~-~H~~~V~~~~~~~~~~~l~s~s~-------------D~~i~vWd~~~~ 139 (335)
.++.|.-+.+..+ +.+ ..+. +....-..+.|.|+|.+.++.+. -+.|.-.+....
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 3445555555431 111 1232 11123457999999998888653 233333343221
Q ss_pred C-------ceeEEEecC-CcceEEECCCCCEEEEEE-cCC--eEEEEEccCCCCCcee-----------e-EEeccCCCc
Q psy16316 140 N-------CQGIMHVSG-SRPIAAFDPEGLIFGVGV-NSD--TIKLYDVRSFDKGPFS-----------N-FKFAAEKEC 196 (335)
Q Consensus 140 ~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~d~--~v~iwd~~~~~~~~~~-----------~-~~~~~~~~~ 196 (335)
- ...++.... ...-++|+|+|.++++-. .++ .|.+......-.-+.. . ..+.. ...
T Consensus 185 ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~-~~~ 263 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST-DEA 263 (347)
T ss_dssp BCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT-TTC
T ss_pred ccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC-CCC
Confidence 0 011222211 123468889888776542 222 2333211000000000 0 00000 001
Q ss_pred cceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeeccc-ccCCCCceEEEEcCCCcEEEEEe
Q psy16316 197 DWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF-LNNKGCPLEASFTPDSKYVISGS 259 (335)
Q Consensus 197 ~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~tgs 259 (335)
...+++|. ++..+...-.+..|....+.........+.. ......+..++..|||.++++-+
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 22456665 4556666666666666666544321110111 11234577888999987665543
No 334
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=92.21 E-value=4.4 Score=33.70 Aligned_cols=177 Identities=12% Similarity=0.237 Sum_probs=85.3
Q ss_pred CeEEEEEcCCCceEee--ecCCCCCeEEEEECCCCCEEEEeeCC-----CcEEEeecCCCCceeEEEecCCc-ceEEECC
Q psy16316 87 DTVRYLSLHDNKYIRY--FPGHTKKVNSLCLSPIDDTFISGSYD-----KTVRLWDLRSPNCQGIMHVSGSR-PIAAFDP 158 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~D-----~~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~ 158 (335)
..+..+|+.+.+-... ++.....-..+.+ ++.+++.|+.+ ..+.++|..+.+....-...... ...+...
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE
Confidence 3567778776643322 2211111112222 56677777755 35788888765433221111111 0111112
Q ss_pred CCCEEEEEEcCC-----eEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-------CCeEEEEECCC
Q psy16316 159 EGLIFGVGVNSD-----TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-------GSIIRTFDAYN 226 (335)
Q Consensus 159 ~~~~~~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-------~~~i~i~d~~~ 226 (335)
++.+++.|+.++ .+.+||+.+. .................+. .+++.++.|+. -..+..||+.+
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~ 182 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSN---EWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATT 182 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTT---EEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCC---eEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCC
Confidence 567777776543 5777887542 2222221111111111222 24555555432 23588999987
Q ss_pred CeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC-----cEEEEECCCCe
Q psy16316 227 GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG-----RIHIWNAEKGF 273 (335)
Q Consensus 227 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg-----~v~iwd~~~~~ 273 (335)
.+.... .......... .+ ...++++++.|+.++ .+.+||..+..
T Consensus 183 ~~W~~~-~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 183 NEWTYI-AEMSTRRSGA-GV-GVLNNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp TEEEEE-CCCSSCCBSC-EE-EEETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred CcEEEC-CCCccccccc-cE-EEECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 754332 1111111111 12 223678888888653 68999987653
No 335
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.39 E-value=13 Score=35.51 Aligned_cols=197 Identities=10% Similarity=0.104 Sum_probs=96.8
Q ss_pred CCCCEEEEecCC----CeEEEEEccCCcceeee-e-------cccccceEEEEecCCCeeEEeecCC-----CCeEEEEE
Q psy16316 31 ADGLLLISCSED----DQIVIYDCELGTNKRTV-F-------SKKYGVDLIRFTHAKQAAIHASTKI-----DDTVRYLS 93 (335)
Q Consensus 31 ~~g~~lasgs~D----g~i~lwd~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~i~~~~ 93 (335)
.++.+++.||.+ ..+.+||..+.+-...- . ........+.... ....++.+|.. -+.+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 567788888754 46788888776533221 1 0111122222211 22333333321 13577888
Q ss_pred cCCCceEee--ecCCCCCeEEEEECCCCCEEEEeeCCC--cEEEeecCCCCceeEEE---e---cCCcceEEECCC-CCE
Q psy16316 94 LHDNKYIRY--FPGHTKKVNSLCLSPIDDTFISGSYDK--TVRLWDLRSPNCQGIMH---V---SGSRPIAAFDPE-GLI 162 (335)
Q Consensus 94 ~~~~~~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~D~--~i~vWd~~~~~~~~~~~---~---~~~~~~~~~~~~-~~~ 162 (335)
+.+.+-... +..-... .+++...++.+++.|+.++ .+.+||..+........ . ......+.+... +.+
T Consensus 475 ~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp TTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred CCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 877543322 2211111 1233324678888888765 68899988765332211 0 011122344444 667
Q ss_pred EEEEEc-------CCeEEEEEccCCCC---CceeeEEec-cCCCccceEEEEccCCCEEEEEeC--------CCeEEEEE
Q psy16316 163 FGVGVN-------SDTIKLYDVRSFDK---GPFSNFKFA-AEKECDWTGIKFSADGKYILISTN--------GSIIRTFD 223 (335)
Q Consensus 163 ~~~~~~-------d~~v~iwd~~~~~~---~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~--------~~~i~i~d 223 (335)
++.|+. .+.+..||+.+..- ..+...... ...... .++....++..++.|+. ...+.+||
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYG-SQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBS-CEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCccc-ceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 777765 24688889875320 002222211 111111 12333333666666552 34589999
Q ss_pred CCCCeee
Q psy16316 224 AYNGQCL 230 (335)
Q Consensus 224 ~~~~~~~ 230 (335)
+.+.+..
T Consensus 633 ~~t~~W~ 639 (695)
T 2zwa_A 633 PLSETLT 639 (695)
T ss_dssp TTTTEEE
T ss_pred CCCCeEE
Confidence 9887654
No 336
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=89.88 E-value=11 Score=33.85 Aligned_cols=203 Identities=10% Similarity=0.168 Sum_probs=111.0
Q ss_pred CCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcc-eEEECCCCCEE
Q psy16316 85 IDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRP-IAAFDPEGLIF 163 (335)
Q Consensus 85 ~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 163 (335)
.+..+.+.|+..+..+..-+ -..-+.-.+|..+.++-=. ..++.++|+.+........+...+. ...+++. .+
T Consensus 46 ~~~~vvIiDl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~--~l 119 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN--TV 119 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEE---CCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT--EE
T ss_pred CCCeEEEEECCCCCcceecc---cccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCC--eE
Confidence 34578888887754432211 1122455788777665544 7899999999877766655543322 2233333 33
Q ss_pred EEEEcCCeEEEEEccCCCCCceeeEEeccC-CCccceEEEEccCCCEEEEEe---C----CCeEEEEECCCCee------
Q psy16316 164 GVGVNSDTIKLYDVRSFDKGPFSNFKFAAE-KECDWTGIKFSADGKYILIST---N----GSIIRTFDAYNGQC------ 229 (335)
Q Consensus 164 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~---~----~~~i~i~d~~~~~~------ 229 (335)
+.. ++..|.-|++.. ...|..-+..... ..+.+-.-..+++.++++..+ . .|.+.+|..+....
T Consensus 120 ~lV-T~taVyHWsi~~-~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGh 197 (494)
T 1bpo_A 120 ALV-TDNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGH 197 (494)
T ss_dssp EEE-CSSEEEEEESSS-SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCS
T ss_pred EEE-cCCeeEEecccC-CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheee
Confidence 333 446788898864 3344433332211 134444555667777665321 1 13455555443210
Q ss_pred ------------------------------ee-----------------eec---ccccCCCCceEEEEcCCCcEEEEEe
Q psy16316 230 ------------------------------LQ-----------------TLA---GFLNNKGCPLEASFTPDSKYVISGS 259 (335)
Q Consensus 230 ------------------------------~~-----------------~~~---~~~~~~~~v~~~~~sp~~~~l~tgs 259 (335)
+. ... ........+.++-.|+....+..-+
T Consensus 198 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT 277 (494)
T 1bpo_A 198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT 277 (494)
T ss_dssp EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE
T ss_pred eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe
Confidence 00 000 0001123455666777777888888
Q ss_pred CCCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCc
Q psy16316 260 TDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296 (335)
Q Consensus 260 ~dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 296 (335)
.-|.|++||++++..+..-.- -.++|...+-+++..
T Consensus 278 K~G~i~lyDleTgt~i~~nrI-s~~~iF~t~~~~~~~ 313 (494)
T 1bpo_A 278 KYGYIHLYDLETGTCIYMNRI-SGETIFVTAPHEATA 313 (494)
T ss_dssp TTSEEEEEETTTCCEEEEEEC-CSSCEEEEEEETTTT
T ss_pred cCceEEEEecccceeeeeecc-cCCceEEecccCCCC
Confidence 999999999999987654432 345665555554433
No 337
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=89.76 E-value=5.9 Score=35.74 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=57.4
Q ss_pred eEEEEccCCC-EEEEEeCCCeEEEEECCCCe---eeeeeccccc------CCCCceEEEEcCC----CcEEEEEeCC---
Q psy16316 199 TGIKFSADGK-YILISTNGSIIRTFDAYNGQ---CLQTLAGFLN------NKGCPLEASFTPD----SKYVISGSTD--- 261 (335)
Q Consensus 199 ~~~~~s~~~~-~l~~~~~~~~i~i~d~~~~~---~~~~~~~~~~------~~~~v~~~~~sp~----~~~l~tgs~d--- 261 (335)
..|+|.|++. .|+++...+.|++++..... .+..+..... ...-.+.++|+|+ +.++++-+.+
T Consensus 17 ~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~ 96 (463)
T 2wg3_C 17 VGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQER 96 (463)
T ss_dssp EEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCS
T ss_pred eEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCC
Confidence 4689999996 45556678899999754321 1111111110 1234578999996 5555554421
Q ss_pred ---------CcEEEEECCCC----------eeEEEeC---CCCCCCeEEEEeCCCCcEEEeee
Q psy16316 262 ---------GRIHIWNAEKG----------FKVCVLD---ADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 262 ---------g~v~iwd~~~~----------~~~~~~~---~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
..|.-|....+ +.+..+. ..|. -..++|.|+|.+.++.+
T Consensus 97 ~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~--g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 97 WAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL--GGQLLFGPDGFLYIILG 157 (463)
T ss_dssp SCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC--EEEEEECTTSCEEEEEC
T ss_pred cccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc--CCcEeECCCCcEEEEeC
Confidence 14555665421 1222221 2353 57899999997766543
No 338
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=89.75 E-value=8.1 Score=32.35 Aligned_cols=179 Identities=12% Similarity=0.130 Sum_probs=87.5
Q ss_pred CeEEEEEcCCCceEe-eecCCCCCeEEEEECCCCCEEEEeeC----C-------CcEEEeecCCCCceeEEEecCCcc-e
Q psy16316 87 DTVRYLSLHDNKYIR-YFPGHTKKVNSLCLSPIDDTFISGSY----D-------KTVRLWDLRSPNCQGIMHVSGSRP-I 153 (335)
Q Consensus 87 ~~i~~~~~~~~~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~----D-------~~i~vWd~~~~~~~~~~~~~~~~~-~ 153 (335)
..+..||+.+++-.. .++.............++..++.|+. + ..+.++|..+.+....-....... .
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 92 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF 92 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence 567788887765432 22222222233333456777788874 1 126778887654322111111110 0
Q ss_pred EEECCCCCEEEEEEcC--------CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-C-----CeE
Q psy16316 154 AAFDPEGLIFGVGVNS--------DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-G-----SII 219 (335)
Q Consensus 154 ~~~~~~~~~~~~~~~d--------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~-----~~i 219 (335)
.....++.+++.|+.+ ..+.+||+.+. ............... ++ ...+++.++.|+. + ..+
T Consensus 93 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~ 167 (315)
T 4asc_A 93 GLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSF---KWGESDPLPYVVYGH-TV-LSHMDLVYVIGGKGSDRKCLNKM 167 (315)
T ss_dssp EEEEETTEEEEECCEESSTTCCBCCCEEEEETTTT---EEEECCCCSSCCBSC-EE-EEETTEEEEECCBCTTSCBCCCE
T ss_pred eEEEECCEEEEEeCCcCCCCCcccceEEEECCCCC---cEeECCCCCCcccce-eE-EEECCEEEEEeCCCCCCcccceE
Confidence 1111256667776632 45788887642 122221111111111 12 2245566666554 1 468
Q ss_pred EEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC-----cEEEEECCCCe
Q psy16316 220 RTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG-----RIHIWNAEKGF 273 (335)
Q Consensus 220 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg-----~v~iwd~~~~~ 273 (335)
.+||+.+.+-... ........... + ..-++++++.|+.++ .+.+||..+..
T Consensus 168 ~~yd~~~~~W~~~-~~~p~~r~~~~-~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 168 CVYDPKKFEWKEL-APMQTARSLFG-A-TVHDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEEETTTTEEEEC-CCCSSCCBSCE-E-EEETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEEeCCCCeEEEC-CCCCCchhceE-E-EEECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 8999887754322 11111111111 2 223678888888765 48889987653
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=88.51 E-value=26 Score=36.49 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=26.8
Q ss_pred CceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEE
Q psy16316 242 CPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVC 276 (335)
Q Consensus 242 ~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~ 276 (335)
.+.++-.++....+..-+.-|.|+++|+.++..+.
T Consensus 260 fpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 260 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred cceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 45556667766777788889999999999986543
No 340
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=88.41 E-value=11 Score=32.27 Aligned_cols=201 Identities=10% Similarity=0.171 Sum_probs=104.6
Q ss_pred CCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEE
Q psy16316 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGV 165 (335)
Q Consensus 86 d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (335)
+..+.+.|+..+..+..-+ -..-+.-.+|..+.++--. ..++.++|+.+.+......+...+..=.|- +.+.++.
T Consensus 48 ~~~VvIiDl~n~~~~~Rrp---i~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWi-s~~~L~l 122 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI-SLNTVAL 122 (365)
T ss_dssp EEEEEEEETTSTTSCEEEE---CCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEEC-SSSEEEE
T ss_pred CCEEEEEECCCCCCccccc---cccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEec-CCCeEEE
Confidence 3467778887654432211 1112444688777655544 678999999987766665554322211222 2233333
Q ss_pred EEcCCeEEEEEccCCCCCceeeEEeccC-CCccceEEEEccCCCEEEEEe----C---CCeEEEEECCCCee--------
Q psy16316 166 GVNSDTIKLYDVRSFDKGPFSNFKFAAE-KECDWTGIKFSADGKYILIST----N---GSIIRTFDAYNGQC-------- 229 (335)
Q Consensus 166 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~----~---~~~i~i~d~~~~~~-------- 229 (335)
- ++..|.-|++.. ...|..-+..... ..+++-.-..+++.++++..+ + .|.+.+|..+....
T Consensus 123 V-T~taVyHWs~~~-~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa 200 (365)
T 2xzh_A 123 V-TDNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAA 200 (365)
T ss_dssp E-ESSEEEEEESST-TCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEE
T ss_pred E-cCCcEEEEcccC-CCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeee
Confidence 3 235788888764 3344433322111 123444445566666554321 1 13455555443210
Q ss_pred ----------------------------eeeec--------------------ccccCCCCceEEEEcCCCcEEEEEeCC
Q psy16316 230 ----------------------------LQTLA--------------------GFLNNKGCPLEASFTPDSKYVISGSTD 261 (335)
Q Consensus 230 ----------------------------~~~~~--------------------~~~~~~~~v~~~~~sp~~~~l~tgs~d 261 (335)
+..++ ........+.++-.|+....+..-+.-
T Consensus 201 ~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~ 280 (365)
T 2xzh_A 201 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY 280 (365)
T ss_dssp EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETT
T ss_pred eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCC
Confidence 00000 000112344455566666777788899
Q ss_pred CcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCC
Q psy16316 262 GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPK 294 (335)
Q Consensus 262 g~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~ 294 (335)
|.|++||++++..+..-.- -.++|...+-+++
T Consensus 281 G~ihlyDleTgt~i~~nrI-S~d~iF~ta~~~~ 312 (365)
T 2xzh_A 281 GYIHLYDLETGTCIYMNRI-SGETIFVTAPHEA 312 (365)
T ss_dssp SEEEEEETTTCCEEEEEEC-CSSCEEEEEEEGG
T ss_pred cEEEEEEcccCcEEEEecc-CCCceEEecccCC
Confidence 9999999999987654432 2345555554443
No 341
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=88.12 E-value=11 Score=31.73 Aligned_cols=161 Identities=8% Similarity=-0.018 Sum_probs=85.5
Q ss_pred EECCCCCEEEEeeCC--------------CcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEE--cC--CeEEEE
Q psy16316 114 CLSPIDDTFISGSYD--------------KTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGV--NS--DTIKLY 175 (335)
Q Consensus 114 ~~~~~~~~l~s~s~D--------------~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d--~~v~iw 175 (335)
-+++++.+|.-+... ..|+..++.......+. .. ....+++++..+.-.. .+ ..|...
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~--~~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~ 134 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD--PD--PCIYASLIGNYIYYLHYDTQTATSLYRI 134 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE--CS--CEEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee--cC--CccEEEEeCCEEEEEeecCCCCceEEEE
Confidence 446777777666542 46777777655432221 11 1235666777766554 23 344444
Q ss_pred EccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC-CCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcE
Q psy16316 176 DVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN-GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKY 254 (335)
Q Consensus 176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 254 (335)
++... ....+.. ... .+++|+++.|.-.+. ...|...++..+...+.+.+ .....++|++++
T Consensus 135 ~~dGs---~~~~lt~---~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~-------~~~~~~~P~g~~ 197 (302)
T 3s25_A 135 RIDGE---EKKKIKN---HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC-------NCYKPVVLDDTN 197 (302)
T ss_dssp ETTSC---CCEEEES---SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS-------CEEEEEEEETTE
T ss_pred ECCCC---CeEEEeC---CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC-------CccceeeecCCE
Confidence 44421 1122211 111 346888998887665 56788888877654332221 112346698888
Q ss_pred EEEEeCC--CcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEee
Q psy16316 255 VISGSTD--GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 255 l~tgs~d--g~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~ 301 (335)
|+-...+ ..|..-++....+. .+.. ..+ ..|+|++.+|.-+
T Consensus 198 iy~t~~~~~~~I~~~~ldG~~~~-~Lt~---~~~--~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 198 VYYMDVNRDNAIVHVNINNPNPV-VLTE---ANI--EHYNVYGSLIFYQ 240 (302)
T ss_dssp EEEEEGGGTTEEEEECSSSCCCE-ECSC---SCE--EEEEEETTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCeE-EEeC---CCc--ceEEECCCEEEEE
Confidence 7765543 34555565544333 3321 233 3477777766543
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=87.16 E-value=13 Score=31.62 Aligned_cols=52 Identities=12% Similarity=0.170 Sum_probs=27.5
Q ss_pred CCCEEEEeeC-C---------CcEEEeecCCCCceeEEEec-CCc-ceEEECCCCCEEEEEEcC
Q psy16316 118 IDDTFISGSY-D---------KTVRLWDLRSPNCQGIMHVS-GSR-PIAAFDPEGLIFGVGVNS 169 (335)
Q Consensus 118 ~~~~l~s~s~-D---------~~i~vWd~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~d 169 (335)
++.+++.|+. + ..+.++|+.+.+........ ... ...+...++.+++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 4567777776 2 46788888775433221111 111 111222567788888754
No 343
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.44 E-value=13 Score=36.95 Aligned_cols=39 Identities=15% Similarity=0.303 Sum_probs=33.1
Q ss_pred CCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEE
Q psy16316 108 KKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH 146 (335)
Q Consensus 108 ~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~ 146 (335)
..+.++...++..+++|-+.|+++|+|++.++++.....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 356777788888899999999999999999998876654
No 344
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=82.61 E-value=18 Score=33.48 Aligned_cols=107 Identities=11% Similarity=0.059 Sum_probs=63.4
Q ss_pred cEEEEEECCCCCEEEEec-CCCeEEEEEccCCcc---------eeeee-c--ccccceEEEEecCCCeeEEeecCCCCeE
Q psy16316 23 KITSIDYSADGLLLISCS-EDDQIVIYDCELGTN---------KRTVF-S--KKYGVDLIRFTHAKQAAIHASTKIDDTV 89 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs-~Dg~i~lwd~~~~~~---------~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~d~~i 89 (335)
....+.++|||++++.++ -+.++.++|.+.-.. ...+. . ...+....+|.. .+..+.+-..|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~--~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG--RGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS--SSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC--CCceEeeeeecceE
Confidence 345789999999877665 589999999874211 00111 1 122334455554 34556666789999
Q ss_pred EEEEcCCC----------ceEeeecCCCCCeEE-----EEECCCCCEEEEee---CCCcE
Q psy16316 90 RYLSLHDN----------KYIRYFPGHTKKVNS-----LCLSPIDDTFISGS---YDKTV 131 (335)
Q Consensus 90 ~~~~~~~~----------~~~~~~~~H~~~V~~-----~~~~~~~~~l~s~s---~D~~i 131 (335)
.-|++... ..+..+.-|-.+-.- =.-.|+|++|++.. .|..+
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl 461 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFL 461 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSC
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCc
Confidence 99999653 344444333322111 12357888998864 45544
No 345
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=80.84 E-value=23 Score=29.47 Aligned_cols=175 Identities=12% Similarity=0.162 Sum_probs=83.7
Q ss_pred eEEEEEcCCCceEe-eecCCCCCeEEEEECCCCCEEEEeeC----CC-------cEEEeecCCCCceeEEEecCC---cc
Q psy16316 88 TVRYLSLHDNKYIR-YFPGHTKKVNSLCLSPIDDTFISGSY----DK-------TVRLWDLRSPNCQGIMHVSGS---RP 152 (335)
Q Consensus 88 ~i~~~~~~~~~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~----D~-------~i~vWd~~~~~~~~~~~~~~~---~~ 152 (335)
.+..||..+++-.. .+..............++..++.|+. ++ .+.++|..+.+....-..... ..
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 47788887765433 12211122222333456677777773 12 166778776543322111111 11
Q ss_pred eEEECCCCCEEEEEEcC-------CeEEEEEccCCCCCceeeEEeccCCCccceEEEEccCCCEEEEEeC------CCeE
Q psy16316 153 IAAFDPEGLIFGVGVNS-------DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN------GSII 219 (335)
Q Consensus 153 ~~~~~~~~~~~~~~~~d-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------~~~i 219 (335)
+..+ ++.+++.|+.+ ..+.+||+.+. .............. .+++. .++...+.|+. -..+
T Consensus 105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~ 177 (318)
T 2woz_A 105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAA---KWSEVKNLPIKVYG-HNVIS-HNGMIYCLGGKTDDKKCTNRV 177 (318)
T ss_dssp EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTT---EEEEECCCSSCEES-CEEEE-ETTEEEEECCEESSSCBCCCE
T ss_pred eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCC---CEeECCCCCCcccc-cEEEE-ECCEEEEEcCCCCCCCccceE
Confidence 2222 56677777653 35777787642 22222111111111 11222 45666565542 2358
Q ss_pred EEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC-----cEEEEECCCC
Q psy16316 220 RTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG-----RIHIWNAEKG 272 (335)
Q Consensus 220 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg-----~v~iwd~~~~ 272 (335)
.+||+.+.+.... .......... .++. -++++++.|+.++ .+.+||..+.
T Consensus 178 ~~yd~~~~~W~~~-~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 178 FIYNPKKGDWKDL-APMKTPRSMF-GVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp EEEETTTTEEEEE-CCCSSCCBSC-EEEE-ETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred EEEcCCCCEEEEC-CCCCCCcccc-eEEE-ECCEEEEEcCcCCCCccceEEEEECCCC
Confidence 9999988754332 1111111111 2222 3678888887543 4778888765
No 346
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=77.24 E-value=9.7 Score=32.69 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=43.1
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEE--cC-CCcEEEEE-eCCCcEEEEECCCCeeEE
Q psy16316 208 KYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF--TP-DSKYVISG-STDGRIHIWNAEKGFKVC 276 (335)
Q Consensus 208 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~--sp-~~~~l~tg-s~dg~v~iwd~~~~~~~~ 276 (335)
..+++++.|+.|.-+|..+|+..-++... ....+....- .+ ++..++.. +.||+|+.++..+|.+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~ 81 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL 81 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe
Confidence 35788899999999999999887776542 1122222110 11 33444443 689999999998885443
No 347
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.08 E-value=11 Score=37.45 Aligned_cols=37 Identities=11% Similarity=0.092 Sum_probs=31.2
Q ss_pred CceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEe
Q psy16316 242 CPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVL 278 (335)
Q Consensus 242 ~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~ 278 (335)
.+.+++..++..++.|-+.|+++|+|++.++..+...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4566778888899999999999999999998766654
No 348
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=75.71 E-value=9.4 Score=38.79 Aligned_cols=39 Identities=15% Similarity=0.312 Sum_probs=32.0
Q ss_pred CeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe
Q psy16316 109 KVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV 147 (335)
Q Consensus 109 ~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~ 147 (335)
.+.+++..++..++++-+.|+++|+||+.+++|......
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 445666677788999999999999999999988776543
No 349
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=73.02 E-value=40 Score=28.16 Aligned_cols=90 Identities=9% Similarity=0.050 Sum_probs=55.5
Q ss_pred EEEEccCCCEEEEEe----CCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeC-CCcEEEEECCCCee
Q psy16316 200 GIKFSADGKYILIST----NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGST-DGRIHIWNAEKGFK 274 (335)
Q Consensus 200 ~~~~s~~~~~l~~~~----~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~-dg~v~iwd~~~~~~ 274 (335)
+..++|++++|+-.. .+..|+..++.... .+.+... . + .+|+|+++.|.-.+. ...|++-++..+.+
T Consensus 108 ~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~---~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~ 179 (302)
T 3s25_A 108 CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNH---Y--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSE 179 (302)
T ss_dssp EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESS---C--C--CCSEEETTEEEEECTTTCCEEEEETTTTEE
T ss_pred ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCC---C--c--eEeeEECCEEEEEeCCCceEEEEECCCCCE
Confidence 357889999998775 34567777776433 3344321 1 1 356788887775554 66788888876655
Q ss_pred EEEeCCCCCCCeEEEEeCCCCcEEEeee
Q psy16316 275 VCVLDADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 275 ~~~~~~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
..... +... ..++|++..|+-.+
T Consensus 180 ~~l~~----~~~~-~~~~P~g~~iy~t~ 202 (302)
T 3s25_A 180 ALFYD----CNCY-KPVVLDDTNVYYMD 202 (302)
T ss_dssp EEEEC----SCEE-EEEEEETTEEEEEE
T ss_pred EEEeC----CCcc-ceeeecCCEEEEEE
Confidence 44332 2222 34668888777554
No 350
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.30 E-value=9.6 Score=38.69 Aligned_cols=37 Identities=11% Similarity=0.092 Sum_probs=31.0
Q ss_pred CceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEe
Q psy16316 242 CPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVL 278 (335)
Q Consensus 242 ~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~ 278 (335)
.+.+++..++..+++|-+.|+++||||+.++..+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4456677788899999999999999999999776654
No 351
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=69.30 E-value=16 Score=34.03 Aligned_cols=58 Identities=21% Similarity=0.374 Sum_probs=39.8
Q ss_pred eEEEEccCCCEEEEEeCC------------CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEE
Q psy16316 199 TGIKFSADGKYILISTNG------------SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISG 258 (335)
Q Consensus 199 ~~~~~s~~~~~l~~~~~~------------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tg 258 (335)
-.|+|+|+|.++++...+ ..+.+.+..+++..+.+.+.. ...+..++|+||++.|...
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~--gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC--CccCcCeeECCCCCEEEEE
Confidence 358999999976665432 246667777887766665543 2346788999998876654
No 352
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=68.92 E-value=23 Score=32.77 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=42.3
Q ss_pred CCceEEEEcCCCcEEEEEeC------------CCcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEeee
Q psy16316 241 GCPLEASFTPDSKYVISGST------------DGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302 (335)
Q Consensus 241 ~~v~~~~~sp~~~~l~tgs~------------dg~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~~ 302 (335)
.++-.+.|+++|.+.++-.. ...|..++..++.....+.......++.++|+|+++.|..+-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45667999999988773221 225777777777665555432335689999999998766553
No 353
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=67.74 E-value=8.2 Score=36.73 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=30.2
Q ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeee
Q psy16316 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~ 59 (335)
...|.++.+. ..++++-+.|+++|+||+.++.+..+.
T Consensus 221 ~~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 221 DSVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp CCEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred CceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 3467777664 679999999999999999999876654
No 354
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=64.68 E-value=33 Score=31.88 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=41.4
Q ss_pred CCceEEEEcCCCcEEEEEeCC------------CcEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEee
Q psy16316 241 GCPLEASFTPDSKYVISGSTD------------GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 241 ~~v~~~~~sp~~~~l~tgs~d------------g~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s~ 301 (335)
.++-.|+|+|.|.+++.-..+ ..+.+.+..++....++...-...++.++|+|+++.|...
T Consensus 476 ~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 345679999999977765432 1345556666765555544445679999999999766544
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=58.00 E-value=94 Score=27.01 Aligned_cols=213 Identities=6% Similarity=-0.037 Sum_probs=104.8
Q ss_pred ccEEEEEECCCCCE-EE-EecCC-------------CeEEEEEccCC--cceeeeecc------cccceEEEEe-cC---
Q psy16316 22 DKITSIDYSADGLL-LI-SCSED-------------DQIVIYDCELG--TNKRTVFSK------KYGVDLIRFT-HA--- 74 (335)
Q Consensus 22 ~~V~~v~~s~~g~~-la-sgs~D-------------g~i~lwd~~~~--~~~~~~~~~------~~~~~~~~~~-~~--- 74 (335)
-.|..+...+.|.+ ++ +|-.+ -.|.+||+.+. +.++.+.-. ...+..+++. ..
T Consensus 87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~ 166 (381)
T 3q6k_A 87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG 166 (381)
T ss_dssp SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence 34777888887763 33 33221 25788999998 777665432 2234556665 21
Q ss_pred --CCeeEEeecCCCCeEEEEEcCCCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcc
Q psy16316 75 --KQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRP 152 (335)
Q Consensus 75 --~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~ 152 (335)
....+..+-.....+.++|+.+++..+.+. .. +.|+....++ -+|.-.-| ...+.
T Consensus 167 ~c~~~~aYItD~~~~gLIVydl~~~~swRv~~--~~------~~pd~~~~~~--i~G~~~~~-------------~~Gi~ 223 (381)
T 3q6k_A 167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTH--PT------FKAERPTKFD--YGGKEYEF-------------KAGIF 223 (381)
T ss_dssp TSCSEEEEEEETTTTEEEEEETTTTEEEEEEC--GG------GSCCSCEEEE--ETTEEEEE-------------CCCEE
T ss_pred CCCccEEEEEcCCCCcEEEEECCCCcEEEEcc--CC------CccccCcceE--ECCEEeEe-------------ccCce
Confidence 133334444457889999999998887763 21 3444111111 12221122 11233
Q ss_pred eEEECCC----CCEE-EEEEcCCeEEEEEccCCCCCc-eeeEEeccCC--CccceEEEEc-cCCCEEEEEeCCCeEEEEE
Q psy16316 153 IAAFDPE----GLIF-GVGVNSDTIKLYDVRSFDKGP-FSNFKFAAEK--ECDWTGIKFS-ADGKYILISTNGSIIRTFD 223 (335)
Q Consensus 153 ~~~~~~~----~~~~-~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~~~--~~~~~~~~~s-~~~~~l~~~~~~~~i~i~d 223 (335)
.++++|+ ++.+ .....+..+.-...+..+... ...++...+. ..+-.+++++ .+|..+++--+...|..|+
T Consensus 224 gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~ 303 (381)
T 3q6k_A 224 GITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWN 303 (381)
T ss_dssp EEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEE
T ss_pred EEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEe
Confidence 4556665 3333 233233333333211111000 1111111111 1233456776 6777777777888999999
Q ss_pred CCC-C---eeeeeecccccCCCCceEEEEcCCCcEEEEE
Q psy16316 224 AYN-G---QCLQTLAGFLNNKGCPLEASFTPDSKYVISG 258 (335)
Q Consensus 224 ~~~-~---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tg 258 (335)
..+ . +....+..-. ....+..+.+.++|.+.+..
T Consensus 304 ~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 304 TQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp TTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEE
T ss_pred CCCCccccCceEEEEECC-CccccCeEEECCCCeEEEEE
Confidence 875 1 1223332211 33355566666555544443
No 356
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=57.06 E-value=14 Score=35.23 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=28.7
Q ss_pred CeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe
Q psy16316 109 KVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV 147 (335)
Q Consensus 109 ~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~ 147 (335)
.|.++.+ +..++++-+.|+++|+||++++++......
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3554444 367999999999999999999887766544
No 357
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=57.02 E-value=45 Score=30.90 Aligned_cols=58 Identities=21% Similarity=0.374 Sum_probs=38.7
Q ss_pred eEEEEccCCCEEEEEeCC------------CeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEE
Q psy16316 199 TGIKFSADGKYILISTNG------------SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISG 258 (335)
Q Consensus 199 ~~~~~s~~~~~l~~~~~~------------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tg 258 (335)
..|.|+++|.+.++.... ..+..++..+++..+.+.... ...+..++|+||++.|...
T Consensus 479 DnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~--~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEE
T ss_pred CceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC--CccccCCEECCCCCEEEEE
Confidence 569999999877754321 257777877787554443221 2346789999999876654
No 358
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=49.95 E-value=1.8e+02 Score=27.74 Aligned_cols=242 Identities=12% Similarity=0.089 Sum_probs=117.1
Q ss_pred cEEEEE-ECCCCCEEEE-----ecCCCeEEEEEccCCcceeeeecc--cc------cceEEEEecCCCeeEEee------
Q psy16316 23 KITSID-YSADGLLLIS-----CSEDDQIVIYDCELGTNKRTVFSK--KY------GVDLIRFTHAKQAAIHAS------ 82 (335)
Q Consensus 23 ~V~~v~-~s~~g~~las-----gs~Dg~i~lwd~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~------ 82 (335)
....+. ++|+|++++- ||+-.+++++|+++++.+...+.. +. ....++|. +.+..++.+
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNE 208 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTC
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCC
Confidence 344566 8999987663 344568899999998765422211 11 11344665 333333321
Q ss_pred ---cCCCCeEEEEEcCCC--ceEeeecCCCCCe-EEEEECCCCC-----EEEEeeCC---CcEEEeecCCCCce-eEEEe
Q psy16316 83 ---TKIDDTVRYLSLHDN--KYIRYFPGHTKKV-NSLCLSPIDD-----TFISGSYD---KTVRLWDLRSPNCQ-GIMHV 147 (335)
Q Consensus 83 ---~~~d~~i~~~~~~~~--~~~~~~~~H~~~V-~~~~~~~~~~-----~l~s~s~D---~~i~vWd~~~~~~~-~~~~~ 147 (335)
.+....++.|.+-+. +-...+++-...+ .+...++++. .+++.+.| ..+.+.|....... ..+..
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 123467888877654 2344555544443 3455566655 35554422 44555565432111 11111
Q ss_pred cCCcceEEECCCCCEEEEE----------EcCCeEEEEEccCCCC-----CceeeEEeccCCCccceEEEEccCCCEEEE
Q psy16316 148 SGSRPIAAFDPEGLIFGVG----------VNSDTIKLYDVRSFDK-----GPFSNFKFAAEKECDWTGIKFSADGKYILI 212 (335)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~----------~~d~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 212 (335)
..... .....++.+++.. ...+.|...|+..... ..... -...+....+..+.+..+ ..+++
T Consensus 289 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSDAT-LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKI-LFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTTCE-EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEE-EECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCcce-EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceE-EECCCCCCeEEEEEEECC-EEEEE
Confidence 11111 1122233333321 2356677788765311 11111 122233344567778765 45555
Q ss_pred EeCCCe--EEEEECCCCe-eeee-ecccccCCCCceEEEEcCCCc-EEEEEeC---CCcEEEEECC
Q psy16316 213 STNGSI--IRTFDAYNGQ-CLQT-LAGFLNNKGCPLEASFTPDSK-YVISGST---DGRIHIWNAE 270 (335)
Q Consensus 213 ~~~~~~--i~i~d~~~~~-~~~~-~~~~~~~~~~v~~~~~sp~~~-~l~tgs~---dg~v~iwd~~ 270 (335)
...++. +.++++.+++ ..+. +.-. ..+.+....+++++. ++++.+. -..++.+|..
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp--~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLP--YQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCC--STTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCC--CCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 555654 6777776664 2222 2111 112344455566654 4444443 2567778776
No 359
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=46.13 E-value=2e+02 Score=27.25 Aligned_cols=273 Identities=12% Similarity=0.039 Sum_probs=138.4
Q ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeeccc-----ccceEEEEecCCCeeEEeecCCCCeEEEEEcC
Q psy16316 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKK-----YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLH 95 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 95 (335)
...|.++...++|.+.+. +.+ -+..+|..++.......... ..+..+..........+++ ++.+..++..
T Consensus 145 ~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt---~~Gl~~~~~~ 219 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYVG-TYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT---EGYLFQYFPS 219 (758)
T ss_dssp CSCEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE---EEEEEEEETT
T ss_pred CCeEEEEEEcCCCCEEEE-eCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEE---CCCCeEEcCC
Confidence 356888888888886653 333 57778876654321111111 1133333333223234433 2357777877
Q ss_pred CCceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEec--------CCcceEEECCCCCEEEEEE
Q psy16316 96 DNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVS--------GSRPIAAFDPEGLIFGVGV 167 (335)
Q Consensus 96 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 167 (335)
+++......-....|.++...+++.+.+ |+.+ -+.++|..+.......+.. ..+..+..+.+|.+.+ |+
T Consensus 220 ~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT 296 (758)
T 3ott_A 220 TGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GT 296 (758)
T ss_dssp TTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EE
T ss_pred CCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-Ee
Confidence 6654322111234588888877776544 4444 5788887665433221111 1123345566676554 44
Q ss_pred cCCeEEEEEccCCCCCceeeEEec----cCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCee--eeeeccc----c
Q psy16316 168 NSDTIKLYDVRSFDKGPFSNFKFA----AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC--LQTLAGF----L 237 (335)
Q Consensus 168 ~d~~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~----~ 237 (335)
..| +.++... ......... ......+.++.-+++|.+.+. +.+| +..++..+++. ...+... .
T Consensus 297 ~~G-l~~~~~~----~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~~~~~~~~~~~~~~ 369 (758)
T 3ott_A 297 DYG-ISLSRYN----SALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERHDAIWYRMGDKTYP 369 (758)
T ss_dssp SSS-EEEECCC----C-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCCCCEEECTTCSSSC
T ss_pred CCc-ccccccC----CceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccceeEEeccCCcCCC
Confidence 455 4443221 111111110 011224677778888886665 4554 55666554321 1112100 0
Q ss_pred cCCCCceEEEEcCCCcEEEEEeCCCcEEEEECCCCeeEEEe--CCC---CCCCeEEEEeCCCCcEEEee-eceeEEecc
Q psy16316 238 NNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVL--DAD---HPSPVQTIQFNPKFNMMASA-CTNLAFWIP 310 (335)
Q Consensus 238 ~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~--~~~---h~~~v~~v~~sp~~~~~~s~-~~~~~~w~~ 310 (335)
-....|.++.-.++|.+.+ |+. +-+..||..++...... ... ....|.++...+++.+-+.. ++.+.++.+
T Consensus 370 l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~ 446 (758)
T 3ott_A 370 LSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDK 446 (758)
T ss_dssp CSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEH
T ss_pred CCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEcc
Confidence 0123466777777777544 443 45999998776433221 111 12458888888888776654 334555543
No 360
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=43.78 E-value=1.6e+02 Score=25.53 Aligned_cols=185 Identities=10% Similarity=0.145 Sum_probs=102.3
Q ss_pred CeEEEEEcCCC--ceEeeecC------CCCCeEEEEEC---CC----CC-EEEEeeCCCcEEEeecCCCCceeEEEecCC
Q psy16316 87 DTVRYLSLHDN--KYIRYFPG------HTKKVNSLCLS---PI----DD-TFISGSYDKTVRLWDLRSPNCQGIMHVSGS 150 (335)
Q Consensus 87 ~~i~~~~~~~~--~~~~~~~~------H~~~V~~~~~~---~~----~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~ 150 (335)
-.+.+||+.++ +.++.+.- ....+..+.+. |. +. ..+|=+.+.-|.++|+.+++.-++.+..
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~-- 200 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT-- 200 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--
Confidence 36788999998 88877642 13457778776 22 22 2344445788999999988776655321
Q ss_pred cceEEECCCCC-EEEEEEcCCeEEEEEccCCCCCceeeEEeccCCCccceEEEEccC----CCEEEEEeC-CCeEEEEEC
Q psy16316 151 RPIAAFDPEGL-IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD----GKYILISTN-GSIIRTFDA 224 (335)
Q Consensus 151 ~~~~~~~~~~~-~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~~~l~~~~~-~~~i~i~d~ 224 (335)
+.|+.. .+.. +|.-.-| ...+.+++++|+ ++.|.-..- +..+.-..+
T Consensus 201 -----~~pd~~~~~~i---~G~~~~~-------------------~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T 253 (381)
T 3q6k_A 201 -----FKAERPTKFDY---GGKEYEF-------------------KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNT 253 (381)
T ss_dssp -----GSCCSCEEEEE---TTEEEEE-------------------CCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEH
T ss_pred -----CccccCcceEE---CCEEeEe-------------------ccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEH
Confidence 234311 1111 1111111 123567899998 677765543 333443331
Q ss_pred ---CCCe---eeeeecccccCCCCceEEEEc-CCCcEEEEEeCCCcEEEEECCC-Ce-----eEEEeCCCCCCCeEEEEe
Q psy16316 225 ---YNGQ---CLQTLAGFLNNKGCPLEASFT-PDSKYVISGSTDGRIHIWNAEK-GF-----KVCVLDADHPSPVQTIQF 291 (335)
Q Consensus 225 ---~~~~---~~~~~~~~~~~~~~v~~~~~s-p~~~~l~tgs~dg~v~iwd~~~-~~-----~~~~~~~~h~~~v~~v~~ 291 (335)
++.. .++.+ +..+.......++++ .+|.++++--+...|..|+..+ .. .+...+. --.+..++++
T Consensus 254 ~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i 331 (381)
T 3q6k_A 254 KELKQKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISV 331 (381)
T ss_dssp HHHSSTTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEE
T ss_pred HHhhCcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEE
Confidence 2221 12211 111111233456775 6788888888888999999875 22 2322222 3456778888
Q ss_pred CCCCcEEEeee
Q psy16316 292 NPKFNMMASAC 302 (335)
Q Consensus 292 sp~~~~~~s~~ 302 (335)
.+++.+-+.+.
T Consensus 332 ~~~g~Lwv~sn 342 (381)
T 3q6k_A 332 DSKGGLWFMSN 342 (381)
T ss_dssp CTTSCEEEEEC
T ss_pred CCCCeEEEEEC
Confidence 77776655543
No 361
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=42.56 E-value=1.8e+02 Score=25.86 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=22.8
Q ss_pred ccEEEEEECCCCC-EEEEecCCCeEEEEEcc
Q psy16316 22 DKITSIDYSADGL-LLISCSEDDQIVIYDCE 51 (335)
Q Consensus 22 ~~V~~v~~s~~g~-~lasgs~Dg~i~lwd~~ 51 (335)
.....++|.|||. .|+.+...|.|++++.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 4467899999996 44455678999999754
No 362
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=42.05 E-value=1.4e+02 Score=24.38 Aligned_cols=246 Identities=11% Similarity=0.069 Sum_probs=114.0
Q ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeecccccceEEEEecCCCeeEEeecCCCCeEEEEEcCCCceEee
Q psy16316 23 KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRY 102 (335)
Q Consensus 23 ~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~ 102 (335)
.|..++....-..++ . ||.+..|-......+.........+..++.. ....++. . |+.+..|.......+-.
T Consensus 25 ~i~~ia~G~~h~~~l--~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G--~~hs~~l--~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL--K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG--NYHSLAL--K-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SCCEEEECSSEEEEE--E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEEC--SSEEEEE--E-TTEEEEEECCTTSTTCC
T ss_pred CCcEEEeCCCeEEEE--E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeC--CCEEEEE--E-CCEEEEeeCCCCCCCCC
Confidence 466666555443333 4 8999999654332222111112234444433 2333333 2 78898887654211111
Q ss_pred ecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEecCCcceEEECCCCCEEEEEEcCCeEEEEEccCCCC
Q psy16316 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDK 182 (335)
Q Consensus 103 ~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~ 182 (335)
-..-...|..++.......+++ ||.|..|-.........- ......+..+.......+.-. ++.+..|--.....
T Consensus 97 P~~~~~~v~~ia~G~~hs~al~---~G~v~~wG~n~~gqlg~~-~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gq 171 (282)
T 3qhy_B 97 PAEARSGVDAIAAGAWASYALK---DGKVIAWGDDSDGQTTVP-AEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQ 171 (282)
T ss_dssp CGGGSSSEEEEEEETTEEEEEE---TTEEEEEECCTTSTTSCC-GGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTST
T ss_pred CcccCCCeEEEECcCCEEEEEe---CCeEEEecCCCCCcCCCC-ccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCC
Confidence 0011246777777665444444 999999976542221110 000111222222222222223 68888887654221
Q ss_pred CceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEEcCCCcEEEEEeCCC
Q psy16316 183 GPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG 262 (335)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg 262 (335)
.. ........+..++-..+...++ .++.++.|=....-.+..-. .....+..++-..+....++ ||
T Consensus 172 lg-----~p~~~~~~v~~i~~G~~hs~al---~~G~v~~wG~n~~gqlg~p~---~~~~~v~~i~~G~~h~~al~---~g 237 (282)
T 3qhy_B 172 TT-----VPAEAQSGVDDVAGGIFHSLAL---KDGKVIAWGDNRYKQTTVPT---EALSGVSAIASGEWYSLALK---NG 237 (282)
T ss_dssp TS-----CCGGGGSSEEEEEECSSEEEEE---ETTEEEEEECCTTSTTCCCG---GGGSSCCEEEECSSCEEEEE---TT
T ss_pred CC-----CceecCCCeEEEEecCCEEEEE---ECCeEEEEECCCCCCCCCCc---ccCCCceEEEcCCCEEEEEE---CC
Confidence 11 0011112344555544443333 47888888654322111110 11123556666555444444 89
Q ss_pred cEEEEECCCCeeEEEeCCCCCCCeEEEEeCCCCcEEEe
Q psy16316 263 RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300 (335)
Q Consensus 263 ~v~iwd~~~~~~~~~~~~~h~~~v~~v~~sp~~~~~~s 300 (335)
+|+.|=.....++. -+..|.+++-.+...+.++
T Consensus 238 ~v~~wG~n~~gq~~-----v~~~v~~iaaG~~h~~al~ 270 (282)
T 3qhy_B 238 KVIAWGSSRTAPSS-----VQSGVSSIEAGPNAAYALK 270 (282)
T ss_dssp EEEEESTTCCCCGG-----GSSCEEEEEECSSCEEEEE
T ss_pred EEEEecCCCCcccc-----CCCCcEEEEECcCeEEEEe
Confidence 99999654322111 1235556655544333333
No 363
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=39.66 E-value=2.5e+02 Score=26.55 Aligned_cols=258 Identities=12% Similarity=0.151 Sum_probs=132.4
Q ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEccCCcceeeeec----ccccceEEEEecCCCeeEEeecCCCCeEEEEEcCC
Q psy16316 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS----KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHD 96 (335)
Q Consensus 21 ~~~V~~v~~s~~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 96 (335)
...|+++.-.++|.+-+ |..+| +..||-..- ..... ....+..+.. +....+-..+ ++.+..||..+
T Consensus 21 ~n~V~~I~qD~~G~lWi-gT~~G-L~ryDG~~~---~~~~~~~~~~~~~i~~i~~--d~~g~lWigT--~~Gl~~yd~~~ 91 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWI-GSNKG-LFSYDGYST---QQHFTYGENNNTRIYCGVI--IDNTYLYMGT--DNGILVYNYRA 91 (758)
T ss_dssp CCCEEEEEECTTSCEEE-EESSC-EEEECSSCE---EECSCTTSTTSSCEEEEEE--ETTTEEEEEE--TTEEEEEETTT
T ss_pred cceEEEEEECCCCCEEE-EECCC-ccccCCCce---EEEEccCCCCCceEEEEEE--cCCCcEEEEe--CCCeEEEeCCC
Confidence 56799999999997432 33566 556774221 11111 1122333332 2233333333 34577888877
Q ss_pred CceEeeecCCCCCeEEEEECCCCCEEEEeeCCCcEEEeecCCCCceeEEEe-----cCCcceEEECCCCCEEEEEEcCCe
Q psy16316 97 NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV-----SGSRPIAAFDPEGLIFGVGVNSDT 171 (335)
Q Consensus 97 ~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~ 171 (335)
.+...........|.++.. .++ .|.-++.+ -+..+|..+++....... ...+..+..+.++.+.+ |+.+ -
T Consensus 92 ~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-G 166 (758)
T 3ott_A 92 DRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-G 166 (758)
T ss_dssp TEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-E
T ss_pred CEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-C
Confidence 6543311112345777654 344 55556655 578889876553322000 11223345566777665 4443 4
Q ss_pred EEEEEccCCCCCceeeEEeccC---CCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecccccCCCCceEEEE
Q psy16316 172 IKLYDVRSFDKGPFSNFKFAAE---KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASF 248 (335)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 248 (335)
+..+|.... ....+..... ....+.++..++++..|.+++.+ -+..+|..+++.. .+.... ...+.++..
T Consensus 167 l~~~~~~~~---~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~-Gl~~~~~~~~~~~-~~~~l~--~~~i~~i~~ 239 (758)
T 3ott_A 167 LCRYIPSNG---KFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEG-YLFQYFPSTGQIK-QTEAFH--NNSIKSLAL 239 (758)
T ss_dssp EEEEETTTT---EEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEE-EEEEEETTTTEEE-EEEEEE--EEEEEEEEE
T ss_pred HhhCccCCC---ceEEecCCCccccccceeEEEEEECCCCEEEEEECC-CCeEEcCCCCeEE-eccCCC--CCeEEEEEE
Confidence 667776431 1111111111 11235677777777766666643 5788898776532 221111 123566777
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCeeEEEeCC------CCCCCeEEEEeCCCCcEEEee
Q psy16316 249 TPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA------DHPSPVQTIQFNPKFNMMASA 301 (335)
Q Consensus 249 sp~~~~l~tgs~dg~v~iwd~~~~~~~~~~~~------~h~~~v~~v~~sp~~~~~~s~ 301 (335)
.++|.+.+. +.+| +.+++..++........ -....|.++...++|.+-+..
T Consensus 240 d~~g~lWig-T~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT 296 (758)
T 3ott_A 240 DGNGDLLAG-TDNG-LYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT 296 (758)
T ss_dssp CTTCCEEEE-ETTE-EEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEE
T ss_pred cCCCCEEEE-eCCc-eeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe
Confidence 777766554 4444 88888765433222111 012357777777777664443
No 364
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=39.56 E-value=95 Score=21.65 Aligned_cols=11 Identities=18% Similarity=0.238 Sum_probs=5.3
Q ss_pred EeCCCcEEEEE
Q psy16316 258 GSTDGRIHIWN 268 (335)
Q Consensus 258 gs~dg~v~iwd 268 (335)
-..||.+.++|
T Consensus 67 l~~dGNLVl~d 77 (119)
T 1b2p_A 67 LQPDGVLVVIT 77 (119)
T ss_dssp ECTTSCEEEEC
T ss_pred EccCCEEEEEe
Confidence 33455555554
No 365
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=33.46 E-value=3e+02 Score=25.62 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=51.1
Q ss_pred eEEEEccCCCEEEEEeC-CCeEEEEECCCCee-----e----eeecccccCCCCceEEEEcCCCcEEEEEeCCCcEEEEE
Q psy16316 199 TGIKFSADGKYILISTN-GSIIRTFDAYNGQC-----L----QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268 (335)
Q Consensus 199 ~~~~~s~~~~~l~~~~~-~~~i~i~d~~~~~~-----~----~~~~~~~~~~~~v~~~~~sp~~~~l~tgs~dg~v~iwd 268 (335)
.++..+|||+++++++. +.++.++|.+.... + ..+.+.....--++..+|+++|.-..|--.|..|--||
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEe
Confidence 35889999999998765 56899999874211 0 01111111223467889999997778888999999999
Q ss_pred CCC
Q psy16316 269 AEK 271 (335)
Q Consensus 269 ~~~ 271 (335)
+.+
T Consensus 406 i~~ 408 (638)
T 3sbq_A 406 MEE 408 (638)
T ss_dssp HHH
T ss_pred ccH
Confidence 864
No 366
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=32.51 E-value=1.2e+02 Score=20.80 Aligned_cols=24 Identities=0% Similarity=-0.065 Sum_probs=14.3
Q ss_pred EEEEeCCCCcEEEeeeceeEEecc
Q psy16316 287 QTIQFNPKFNMMASACTNLAFWIP 310 (335)
Q Consensus 287 ~~v~~sp~~~~~~s~~~~~~~w~~ 310 (335)
..+.+..+|++++.....-.+|.-
T Consensus 59 ~~l~l~~dGNLVl~d~~~~~iW~S 82 (113)
T 3mez_B 59 CFMRLGHSGELDITDDRLNTVFVS 82 (113)
T ss_dssp CEEEECTTSCEEEECTTSCEEEEC
T ss_pred EEEEEeCCCcEEEECCCCCEEEEC
Confidence 356677777777665333346754
No 367
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=30.95 E-value=1.3e+02 Score=20.55 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=10.0
Q ss_pred EEeCCCCcEEEeeeceeEEec
Q psy16316 289 IQFNPKFNMMASACTNLAFWI 309 (335)
Q Consensus 289 v~~sp~~~~~~s~~~~~~~w~ 309 (335)
+.+..+|++++.....-.+|.
T Consensus 55 l~l~~dGNLVl~~~~~~~~W~ 75 (110)
T 3a0c_A 55 LTLHNNGNLVIYDQSNRVIWQ 75 (110)
T ss_dssp EEECTTSCEEEECTTCCEEEE
T ss_pred EEEeCCCCEEEECCCCcEEEe
Confidence 445555555554433334553
No 368
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=25.10 E-value=2.8e+02 Score=22.58 Aligned_cols=161 Identities=11% Similarity=0.133 Sum_probs=81.7
Q ss_pred CCCeEEEEECC-CCCEEEEeeCCCcEEEeecCCCC--ceeE--EEec--CCcceEEECCCCCEEEEEEcCCeEEEEEccC
Q psy16316 107 TKKVNSLCLSP-IDDTFISGSYDKTVRLWDLRSPN--CQGI--MHVS--GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS 179 (335)
Q Consensus 107 ~~~V~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~--~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iwd~~~ 179 (335)
...|.++-... +...++..+.+|.++...+.... .... +... ...-.+........++..++.|.+..++...
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~e 146 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVRE 146 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhh
Confidence 34555554321 45789999999999998875432 0011 1111 1111122233445677778888888887643
Q ss_pred CCCC-----ceeeEEeccCCCccceEEEEccCCCEEEEEeCCCeEEEEECCCCeeeee----ecccccCCCCceEEEEcC
Q psy16316 180 FDKG-----PFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQT----LAGFLNNKGCPLEASFTP 250 (335)
Q Consensus 180 ~~~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~i~i~d~~~~~~~~~----~~~~~~~~~~v~~~~~sp 250 (335)
.... -...+.. .....+.++...+++..++..+..|.++...+.......+ +... .....+..+..-.
T Consensus 147 ip~~gR~a~Gv~~i~L--~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~ 223 (276)
T 3no0_A 147 VPPSTPGARGVQGIKL--EKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIK 223 (276)
T ss_dssp SCBCCTTCCCEECCCC--CTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEES
T ss_pred CCCcCCCCCCEEEEcc--CCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeC
Confidence 2110 0011111 1122344444445566888888888888887643322111 0001 1122333332223
Q ss_pred CCcEEEEEeCCCcEEE--EECC
Q psy16316 251 DSKYVISGSTDGRIHI--WNAE 270 (335)
Q Consensus 251 ~~~~l~tgs~dg~v~i--wd~~ 270 (335)
+...++..+.+|.+.. ++.+
T Consensus 224 ~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 224 EEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp SEEEEEEEETTSCEEEEEEEGG
T ss_pred CCCEEEEEcCCCeEEEeeeCHH
Confidence 3345666677777777 7654
No 369
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=22.19 E-value=4.2e+02 Score=24.92 Aligned_cols=57 Identities=11% Similarity=0.224 Sum_probs=35.2
Q ss_pred EEEEEeCCCeE-EEEECCCCee-eeeecccccCCCCceEEEEcCCC--cEEEEEeCCCcEEE
Q psy16316 209 YILISTNGSII-RTFDAYNGQC-LQTLAGFLNNKGCPLEASFTPDS--KYVISGSTDGRIHI 266 (335)
Q Consensus 209 ~l~~~~~~~~i-~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~--~~l~tgs~dg~v~i 266 (335)
.+..|+++|.| ++........ +.++.. ......|..+.++++. .+|..++.++-++|
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~~~ee~~~-~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVHIIEETQL-FQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEEEEEEEEC-CTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCceEEEEecc-cCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 56778888765 4444444322 222222 2233567789999988 89999988875554
Done!