RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16316
(335 letters)
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 146 bits (370), Expect = 1e-39
Identities = 47/288 (16%), Positives = 105/288 (36%), Gaps = 18/288 (6%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK-KYGVDLIRFTHAKQAAI 79
+ + + +S DG + S S D I I++ ++T+ + + KQA +
Sbjct: 239 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV 298
Query: 80 HASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP 139
S + + +++ + GH K + +L S T S + + WD+ +
Sbjct: 299 SIS--ANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356
Query: 140 NCQGIMHVSGSRPI--AAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECD 197
+ + I +G +F V D +K+ + K A K
Sbjct: 357 ISNRVFPDVHATMITGIKTTSKGDLFTVS-WDDHLKVVPA---GGSGVDSSKAVANKLSS 412
Query: 198 W-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI 256
G+ SADG + + I + +G+ + + ++ + + D ++V
Sbjct: 413 QPLGLAVSADGDIAVAACYKH-IAIYS--HGKLTEVPISYNSSC-----VALSNDKQFVA 464
Query: 257 SGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304
G D ++H++ V HP+ + ++ F+ + + +
Sbjct: 465 VGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS 512
Score = 135 bits (341), Expect = 1e-35
Identities = 52/286 (18%), Positives = 102/286 (35%), Gaps = 24/286 (8%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQ--IVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAA 78
+ + I + ++ + + E + ++ + GT+ + + ++ + F ++
Sbjct: 103 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFR 162
Query: 79 IHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS 138
I S D+TV K+ F HTK V+S+ +P F S D T+ L++
Sbjct: 163 I-ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221
Query: 139 PNCQGIMHVSGSRPIA--------AFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNF 188
G+ + +A + P+G S TIK+++V +
Sbjct: 222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA--SADKTIKIWNVAT---LKVEKT 276
Query: 189 KFAAEKECDWTGIKFSADGKYIL-ISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247
+ D + + ++ IS NG I + G Q G S
Sbjct: 277 IPVGTRIEDQQ-LGIIWTKQALVSISANGF-INFVNPELGSIDQVRYGHNKAITA---LS 331
Query: 248 FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
+ D K + S +G I+ W+ G V H + + I+
Sbjct: 332 SSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 377
Score = 134 bits (340), Expect = 2e-35
Identities = 47/308 (15%), Positives = 96/308 (31%), Gaps = 23/308 (7%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
+ I + ++ + IT++ SADG L S + I +D G + R
Sbjct: 303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF 362
Query: 60 FSK-KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFP---GHTKKVNSLCL 115
+ I+ T + DD ++ + + + + L +
Sbjct: 363 PDVHATMITGIKTTSKGD---LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 419
Query: 116 SPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLY 175
S D + K + ++ I + S A + VG + +Y
Sbjct: 420 SA-DGDIAVAACYKHIAIYSHGKLTEVPISYNSSC---VALSNDKQFVAVGGQDSKVHVY 475
Query: 176 DVRSFDKGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234
+ S K T + FS +G +++ + + + N L
Sbjct: 476 KLSG---ASVSEVKTIVHP--AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN 530
Query: 235 GFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD-HPSPVQTIQFNP 293
+ + S++PD+ + +GS D + +WN K ++ H
Sbjct: 531 SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL 590
Query: 294 KFNMMASA 301
+ SA
Sbjct: 591 NETTIVSA 598
Score = 109 bits (276), Expect = 8e-27
Identities = 38/316 (12%), Positives = 85/316 (26%), Gaps = 75/316 (23%)
Query: 5 DNVIR--SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK 62
+ S +++ E++ + T S G S + I+D T+
Sbjct: 41 VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH------- 93
Query: 63 KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF 122
+++ T P + V + +
Sbjct: 94 -----ILKTT------------------------------IPVFSGPVKDISWDS-ESKR 117
Query: 123 I---SGSYDKTVRLWDLRSPNCQGIM--HVSGSRPI--AAFDPEGLIFGVGVNSD-TIKL 174
I ++ ++ + G + +R + F P + + D T+ +
Sbjct: 118 IAAVGEGRERFGHVFLFDTGTSNGNLTGQ---ARAMNSVDFKPSRPFRIISGSDDNTVAI 174
Query: 175 YDVRSFDKGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL 233
++ F FK + + ++++ DG + I ++ +G
Sbjct: 175 FEGPPFK------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF 228
Query: 234 AGFLNNKGCPLEA--------SFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSP 285
A +++PD + S S D I IWN +
Sbjct: 229 ED----DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE 284
Query: 286 VQTIQFNPKFNMMASA 301
Q + + S
Sbjct: 285 DQQLGIIWTKQALVSI 300
Score = 108 bits (273), Expect = 2e-26
Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 26/277 (9%)
Query: 5 DNVIRSYKVA------KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYD---CELGTN 55
+ I S+ ++ + IT I ++ G L + S DD + + + ++
Sbjct: 345 EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVDSS 403
Query: 56 KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL 115
K + + A+ A + S K + + + L
Sbjct: 404 KAVANKLSSQPLGLAVSADGDIAVAAC---YKHIAIYS--HGKLTEVPISYN--SSCVAL 456
Query: 116 SPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPI--AAFDPEGLIFGVGVNSDTIK 173
S G D V ++ L + + + I AF G S +
Sbjct: 457 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVI 516
Query: 174 LYDVRS-FDKGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQ 231
Y V + F+ +++ F + +S D + + + + ++
Sbjct: 517 PYSVANNFELAHTNSWTF----HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP 572
Query: 232 TLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
+ + + + + ++S D I WN
Sbjct: 573 III-KGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 608
Score = 105 bits (265), Expect = 2e-25
Identities = 37/230 (16%), Positives = 67/230 (29%), Gaps = 33/230 (14%)
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSP 139
+ TV + + H+ + SP + SG VR+WD
Sbjct: 36 CNGTSVYTVP---VGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQT 91
Query: 140 NCQGIMHVSG-SRPI--AAFDPEG--LIFGVGVNSDTIKLYDVRSFD-KGPFSNFKFAAE 193
+ S P+ ++D E + ++ + G +
Sbjct: 92 THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA---- 147
Query: 194 KECDW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249
+ F + +IS GS + F+ + T + +
Sbjct: 148 ---RAMNSVDFKPSRPFRIIS--GSDDNTVAIFEGPPFKFKSTFGE---HTKFVHSVRYN 199
Query: 250 PDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD------HPSPVQTIQFNP 293
PD S DG I ++N G K V + D H V + ++P
Sbjct: 200 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249
Score = 73.8 bits (182), Expect = 1e-14
Identities = 35/185 (18%), Positives = 66/185 (35%), Gaps = 16/185 (8%)
Query: 4 TDNVIRSYKVAKLFRENTD-KITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK 62
I Y KL + + S D + +D ++ +Y +
Sbjct: 430 CYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV 489
Query: 63 -KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRY---FPGHTKKVNSLCLSPI 118
+ + F++ + V S+ +N + + + HT KV + SP
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQ--SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP- 546
Query: 119 DDTFI-SGSYDKTVRLWDLRSPNCQGIM----HVSGSRPIAAFDPEGLIFGVGVNSD-TI 172
D+ + +GS D +V +W++ P+ I+ H S + E I G D I
Sbjct: 547 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAG--QDSNI 604
Query: 173 KLYDV 177
K ++V
Sbjct: 605 KFWNV 609
Score = 58.7 bits (143), Expect = 1e-09
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 7/105 (6%)
Query: 199 TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISG 258
+ + G I NG+ + T + + + A +P Y SG
Sbjct: 22 VVLGNTPAGDKIQY-CNGTSVYTVPVGSLTDTEIYTE---HSHQTTVAKTSPSGYYCASG 77
Query: 259 STDGRIHIWNAEKGFKVC--VLDADHPSPVQTIQFNPKFNMMASA 301
G + IW+ + + + PV+ I ++ + +A+
Sbjct: 78 DVHGNVRIWDTTQTTHILKTTIPV-FSGPVKDISWDSESKRIAAV 121
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 146 bits (370), Expect = 4e-39
Identities = 47/280 (16%), Positives = 99/280 (35%), Gaps = 22/280 (7%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK-KYGVDLIRFTHAK 75
+ + +SADG +I + ++++++D + + + F+
Sbjct: 794 PEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD 852
Query: 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135
A+ A + V ++ + GH V+ + SP +F++ S D+T+R+W+
Sbjct: 853 HLAVIALS--QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910
Query: 136 LRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS--FDKGPFSNFKFAAE 193
+ + + + F + N ++L ++ D P +
Sbjct: 911 TKKVCKNSAIVLKQEIDV-VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQV----- 964
Query: 194 KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK 253
+ S +Y+ I+ + N + + G +K FT D K
Sbjct: 965 -----SCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG---HKKAVRHIQFTADGK 1016
Query: 254 YVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
+IS S D I +WN + G V H V+ +
Sbjct: 1017 TLISSSEDSVIQVWNWQTGD--YVFLQAHQETVKDFRLLQ 1054
Score = 139 bits (353), Expect = 7e-37
Identities = 61/311 (19%), Positives = 113/311 (36%), Gaps = 44/311 (14%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
D ++ + + + + D++ +S+D + +CS D ++ I+D G T
Sbjct: 636 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 695
Query: 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID 119
V+ FT+ + A+ D ++ L+ + GHT VN SP D
Sbjct: 696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD 755
Query: 120 DTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS 179
+ S S D T+RLWD+RS N + ++V + PE + V
Sbjct: 756 ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIV-------------- 801
Query: 180 FDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL-QTLAGFLN 238
+SADG I+++ ++ FD + L + G
Sbjct: 802 -------------------KCCSWSADGDKIIVAAKNKVLL-FDIHTSGLLAEIHTG--- 838
Query: 239 NKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMM 298
+ F+P + + + +WN + KV H S V + F+P +
Sbjct: 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG-HLSWVHGVMFSPDGSSF 897
Query: 299 ASACTNLAFWI 309
+A + +
Sbjct: 898 LTASDDQTIRV 908
Score = 138 bits (349), Expect = 2e-36
Identities = 57/278 (20%), Positives = 108/278 (38%), Gaps = 21/278 (7%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
D I+ + +V + + I ++ADG LIS SED I +++ + G +
Sbjct: 982 DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-YVFL 1040
Query: 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID 119
+ + V R + S D TV+ ++ + R F H V S +S
Sbjct: 1041 QAHQETVKDFRLLQDSR---LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDA 1097
Query: 120 DTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDV 177
F S S DKT ++W + + H R AF +G++ G ++ I++++V
Sbjct: 1098 TKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCS-AFSLDGILLATGDDNGEIRIWNV 1156
Query: 178 RS---FDKGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL 233
+ + W T + FS D K ++ + G ++ ++ G QT
Sbjct: 1157 SDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV--SAGGYLKWWNVATGDSSQTF 1214
Query: 234 AGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEK 271
N + +PD + ++ G ++I +
Sbjct: 1215 YT---NGTNLKKIHVSPDFRTYVTVDNLGILYILQVLE 1249
Score = 119 bits (301), Expect = 5e-30
Identities = 51/316 (16%), Positives = 94/316 (29%), Gaps = 67/316 (21%)
Query: 5 DNVIRSYKVA--KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK 62
++ ++ +++ S + ED I I + +
Sbjct: 943 IRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGH 1002
Query: 63 KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF 122
K V I+FT + I +S D ++ + Y+ H + V L D
Sbjct: 1003 KKAVRHIQFTADGKTLISSSE--DSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DSRL 1058
Query: 123 ISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
+S S+D TV++W++ + + H V S
Sbjct: 1059 LSWSFDGTVKVWNVITGRIERDFTCHQGT---------------------------VLSC 1091
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
S+D ++ + + L L G +
Sbjct: 1092 A---------------------ISSDATKFSSTSADKTAKIWSFDLLSPLHELKG---HN 1127
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD--------HPSPVQTIQFN 292
GC ++F+ D + +G +G I IWN G + H V + F+
Sbjct: 1128 GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFS 1187
Query: 293 PKFNMMASACTNLAFW 308
P + SA L +W
Sbjct: 1188 PDSKTLVSAGGYLKWW 1203
Score = 114 bits (288), Expect = 3e-28
Identities = 43/254 (16%), Positives = 86/254 (33%), Gaps = 36/254 (14%)
Query: 75 KQAAIHASTKIDDTVRYLSLHDNKYIRY-----FPGHTKKVNSLCLSPIDDTFISGSYDK 129
+QA + A + D YL + K I+ HT V C S S DK
Sbjct: 578 RQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADK 637
Query: 130 TVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD-KGPFS 186
T++++ + + H AF + +K++D + +
Sbjct: 638 TLQVFKAETGEKLLDIKAHEDEVLCC-AFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 696
Query: 187 NFKFAAEKECDW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGC 242
+ F+ ++L++T GS ++ +D +C T+ G +
Sbjct: 697 EHS-------EQVNCCHFTNKSNHLLLAT-GSNDFFLKLWDLNQKECRNTMFG---HTNS 745
Query: 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA------------DHPSPVQTIQ 290
F+PD + + S S DG + +W+ + ++ D V+
Sbjct: 746 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS 805
Query: 291 FNPKFNMMASACTN 304
++ + + A N
Sbjct: 806 WSADGDKIIVAAKN 819
Score = 80.6 bits (199), Expect = 8e-17
Identities = 32/228 (14%), Positives = 73/228 (32%), Gaps = 27/228 (11%)
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLR--S 138
+ V+ Y K+ + ++ KT++
Sbjct: 556 GRQPFPNIVQLGLCEPETSEVY---RQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVR 612
Query: 139 PNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD-KGPFSNFKFAAEKECD 197
P+ + H F +G T++++ + + + D
Sbjct: 613 PHTDAVYHA-------CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE-------D 658
Query: 198 W-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI 256
FS+D YI + ++ +D+ G+ + T + FT S +++
Sbjct: 659 EVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE---HSEQVNCCHFTNKSNHLL 715
Query: 257 --SGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302
+GS D + +W+ + + H + V +F+P ++AS
Sbjct: 716 LATGSNDFFLKLWDLNQKECRNTMFG-HTNSVNHCRFSPDDELLASCS 762
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta
transducin repeat all beta, signaling protein; 1.10A
{Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A
2i3s_A 2i3t_A
Length = 342
Score = 126 bits (319), Expect = 4e-34
Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 25/303 (8%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGT---NKRTVFSKKYGVDLIRFTHAKQA 77
D I+ I LL+ S D + +Y ++ + K+ + F
Sbjct: 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL 70
Query: 78 AIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSL-CLSPIDDTFISGSYDKTVRLWDL 136
I + + + L + + + + DD I+ S+D + + D
Sbjct: 71 QI-YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP 129
Query: 137 RSPNCQG-------IMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFK 189
R+ + I D VG+N+ ++ + + + +
Sbjct: 130 RNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED-DNGTIE 188
Query: 190 FAAEKECDWTGIKFSADGKYILI-STNGSI-IRTFDA----------YNGQCLQTLAGFL 237
+ K + + S +G + + FD + +C +
Sbjct: 189 ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT 248
Query: 238 NNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNM 297
N F+P K++ + +DG I WN + K+ + V I +
Sbjct: 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILC 308
Query: 298 MAS 300
+A+
Sbjct: 309 LAT 311
Score = 66.8 bits (163), Expect = 1e-12
Identities = 27/165 (16%), Positives = 45/165 (27%), Gaps = 19/165 (11%)
Query: 29 YSADGLLLISCSEDDQIVIYDCELGTN--KRTVFSK-KYGVDLIRFTHAKQAAIHASTKI 85
+ LI + Q+ + L + S KY + + +Q A + I
Sbjct: 156 MDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGY-ACSSI 214
Query: 86 DDTVRYLSLHDN------KYIRYFPGHTKK---------VNSLCLSPIDDTFISGSYDKT 130
D V D F H VNS+ SP + D
Sbjct: 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI 274
Query: 131 VRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLY 175
+ W+L++ + I + + DT K
Sbjct: 275 ISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTN 319
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer
signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP:
b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B*
1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A
3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B*
3sn6_B*
Length = 340
Score = 124 bits (315), Expect = 2e-33
Identities = 64/259 (24%), Positives = 101/259 (38%), Gaps = 18/259 (6%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG----VDLIRFT 72
+ + + Y+ G + D+ IY+ + V + G + RF
Sbjct: 93 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 73 HAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVR 132
Q ++ D T + + F GHT V SL L+P F+SG+ D + +
Sbjct: 153 DDNQIV---TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 133 LWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKF 190
LWD+R C+ H S I F P G F G + T +L+D+R+ D+ +
Sbjct: 210 LWDVREGMCRQTFTGHESDINAI-CFFPNGNAFATGSDDATCRLFDLRA-DQ---ELMTY 264
Query: 191 AAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249
+ + T + FS G+ +L + +DA LAG N C T
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC---LGVT 321
Query: 250 PDSKYVISGSTDGRIHIWN 268
D V +GS D + IWN
Sbjct: 322 DDGMAVATGSWDSFLKIWN 340
Score = 102 bits (258), Expect = 2e-25
Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 17/224 (7%)
Query: 84 KIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG 143
+I + + + + R GH K+ ++ +S S D + +WD + N
Sbjct: 32 QITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH 91
Query: 144 I--MHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDW-TG 200
+ S A+ P G G + +Y++++ + + + A + +
Sbjct: 92 AIPLRSSWVMTC-AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT--GYLSC 148
Query: 201 IKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS 257
+F D + +++ S +D GQ T G + G + S PD++ +S
Sbjct: 149 CRFLDDNQ--IVT--SSGDTTCALWDIETGQQTTTFTG---HTGDVMSLSLAPDTRLFVS 201
Query: 258 GSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
G+ D +W+ +G H S + I F P N A+
Sbjct: 202 GACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATG 244
Score = 99.5 bits (249), Expect = 5e-24
Identities = 45/303 (14%), Positives = 97/303 (32%), Gaps = 91/303 (30%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
KI ++ + D LL+S S+D +++I+D
Sbjct: 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA---------------------- 92
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSP 139
P + V + +P ++ G D +++L++
Sbjct: 93 ----------------------IPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKT- 128
Query: 140 NCQGIMHVSGSRPIA---------AFDPEGLIFGVGVNSD-TIKLYDVRSFDKGPFSNFK 189
+V SR +A F + I V + D T L+D+ +
Sbjct: 129 ---REGNVRVSRELAGHTGYLSCCRFLDDNQI--VTSSGDTTCALWDIET---------- 173
Query: 190 FAAEKECDWTG-------IKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNN 239
++ +TG + + D + +S G+ + +D G C QT G +
Sbjct: 174 --GQQTTTFTGHTGDVMSLSLAPDTRLF-VS--GACDASAKLWDVREGMCRQTFTG---H 225
Query: 240 KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD-HPSPVQTIQFNPKFNMM 298
+ F P+ +GS D +++ ++ D + ++ F+ ++
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 299 ASA 301
+
Sbjct: 286 LAG 288
Score = 66.4 bits (163), Expect = 1e-12
Identities = 31/219 (14%), Positives = 65/219 (29%), Gaps = 54/219 (24%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWD-----LR-----------SPNCQGIMHVS 148
+ C + I+ + D R+ LR + + + +S
Sbjct: 16 NQIRDARKACADA-TLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLL--LS 72
Query: 149 GSRPIAAFDPEGLIFGVGVNSD-TIKLYDVRSFDKGPFSNFKFAAEKECDW-TGIKFSAD 206
S D + ++D + +N A W ++
Sbjct: 73 AS------------------QDGKLIIWDSYT------TNKVHAIPLRSSWVMTCAYAPS 108
Query: 207 GKYILISTNGSIIRTFDAYNGQ----CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG 262
G Y+ +I ++ + + LAG + G F D++ +++ S D
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAG---HTGYLSCCRFLDDNQ-IVTSSGDT 164
Query: 263 RIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
+W+ E G + H V ++ P + S
Sbjct: 165 TCALWDIETGQQTTTFT-GHTGDVMSLSLAPDTRLFVSG 202
Score = 59.1 bits (144), Expect = 5e-10
Identities = 22/183 (12%), Positives = 47/183 (25%), Gaps = 69/183 (37%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVD 67
+R + F + I +I + +G + S+D ++D T
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT--------- 263
Query: 68 LIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGS 126
S + S+ S + +G
Sbjct: 264 ------------------------YSHD---------NIICGITSVSFSK-SGRLLLAGY 289
Query: 127 YDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSD-----------TIK 173
D +WD + G++ H + + +GV D +K
Sbjct: 290 DDFNCNVWDALKADRAGVLAGH------------DNRVSCLGVTDDGMAVATGSWDSFLK 337
Query: 174 LYD 176
+++
Sbjct: 338 IWN 340
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller,
3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core
complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A*
2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A
3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A
2h13_A 3p4f_A 4a7j_A* 2h9l_A ...
Length = 312
Score = 123 bits (312), Expect = 4e-33
Identities = 73/309 (23%), Positives = 119/309 (38%), Gaps = 67/309 (21%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT- 58
D +I+ K K + I+ + +S+D LL+S S+D + I+D G +T
Sbjct: 44 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Query: 59 ------VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNS 112
VF F S D++VR + K ++ P H+ V++
Sbjct: 104 KGHSNYVFC-------CNFNPQSNLI--VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 154
Query: 113 LCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTI 172
+ + +S SYD R+WD S C + + P V+
Sbjct: 155 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPP-------------VSF--- 197
Query: 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQT 232
+KFS +GKYIL +T + ++ +D G+CL+T
Sbjct: 198 ----------------------------VKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229
Query: 233 LAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFN 292
G N K C K+++SGS D ++IWN + V L H V + +
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACH 288
Query: 293 PKFNMMASA 301
P N++ASA
Sbjct: 289 PTENIIASA 297
Score = 87.5 bits (218), Expect = 7e-20
Identities = 45/280 (16%), Positives = 95/280 (33%), Gaps = 68/280 (24%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
D ++ S K K + +++ + +++ L++S S D+ + I+D + G +T+
Sbjct: 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
Query: 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR-YFPGHTKKVNSLCLSPI 118
+ V + F + S+ D R + ++ V+ + SP
Sbjct: 146 PAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP- 202
Query: 119 DDTFI-SGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLY 175
+ +I + + D T++LWD C H + I A
Sbjct: 203 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA-------------------- 242
Query: 176 DVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQT 232
+F GK+I +S GS ++ ++ + +Q
Sbjct: 243 ---NF----------------------SVTGGKWI-VS--GSEDNLVYIWNLQTKEIVQK 274
Query: 233 LAGFLNNKGCPLEASFTPDSKYVISGST--DGRIHIWNAE 270
L G + + P + S + D I +W ++
Sbjct: 275 LQGHTDVVIS---TACHPTENIIASAALENDKTIKLWKSD 311
Score = 64.0 bits (157), Expect = 8e-12
Identities = 26/134 (19%), Positives = 59/134 (44%), Gaps = 10/134 (7%)
Query: 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF---SKKYGVDLI 69
+ L ++ ++ + +S +G +++ + D+ + ++D G +T ++KY +
Sbjct: 184 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 243
Query: 70 RFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSY-- 127
+ + S D+ V +L + ++ GHT V S P ++ S +
Sbjct: 244 FSVTGGKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 301
Query: 128 DKTVRLWDLRSPNC 141
DKT++LW +C
Sbjct: 302 DKTIKLWKS---DC 312
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit;
lissencephaly, platelet activacting factor, regulator of
cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Length = 410
Score = 125 bits (316), Expect = 5e-33
Identities = 57/298 (19%), Positives = 109/298 (36%), Gaps = 66/298 (22%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
TD + I + G LL SCS D I ++D + RT
Sbjct: 150 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT---------------------- 187
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
GH V+S+ + P D +S S DKT+++W++++
Sbjct: 188 ----------------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225
Query: 141 CQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD-KGP------------F 185
C H R + + +G + N T++++ V + + K +
Sbjct: 226 CVKTFTGHREWVRMV-RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW 284
Query: 186 S-NFKFAAEKECDWT-GIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCP 243
+ +++ E + K G ++L + I+ +D G CL TL G N
Sbjct: 285 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG- 343
Query: 244 LEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
F K+++S + D + +W+ + + L+A H V ++ F+ + +
Sbjct: 344 --VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-HEHFVTSLDFHKTAPYVVTG 398
Score = 104 bits (261), Expect = 2e-25
Identities = 42/235 (17%), Positives = 81/235 (34%), Gaps = 37/235 (15%)
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
+ + GH V + P+ +S S D T+++WD + +
Sbjct: 83 GPLGQKRDPK-EWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD 141
Query: 141 CQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC-- 196
+ + H + I +FD G + TIKL+D + F EC
Sbjct: 142 FERTLKGHTDSVQDI-SFDHSGKLLASCSADMTIKLWDFQGF--------------ECIR 186
Query: 197 ------DW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEA 246
+ + +G +I +S S I+ ++ G C++T G ++
Sbjct: 187 TMHGHDHNVSSVSIMPNGDHI-VS--ASRDKTIKMWEVQTGYCVKTFTG---HREWVRMV 240
Query: 247 SFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
D + S S D + +W L +H V+ I + P+ + + +
Sbjct: 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSIS 294
Score = 85.0 bits (211), Expect = 1e-18
Identities = 42/255 (16%), Positives = 82/255 (32%), Gaps = 77/255 (30%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
F + + + + + DG L+ SCS D + ++ K + ++ V+ I +
Sbjct: 230 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA---- 285
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
++ Y + +SGS DKT+++WD+
Sbjct: 286 ------------------PESSYS--SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325
Query: 137 RSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEK 194
+ C + H + VR
Sbjct: 326 STGMCLMTLVGHDNW---------------------------VRG--------------- 343
Query: 195 ECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKY 254
+ F + GK+IL + +R +D N +C++TL + F + Y
Sbjct: 344 ------VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS---LDFHKTAPY 394
Query: 255 VISGSTDGRIHIWNA 269
V++GS D + +W
Sbjct: 395 VVTGSVDQTVKVWEC 409
Score = 78.8 bits (195), Expect = 1e-16
Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 43/198 (21%)
Query: 121 TFISGSYDKTVRLWDLRSPNCQ---GIMHVSGSRPI--AAFDPEGLIFGVGVNSDTIKLY 175
+ + + W R P G H P+ F P + TIK++
Sbjct: 81 SGGPLGQKRDPKEWIPRPPEKYALSG--H---RSPVTRVIFHPVFSVMVSASEDATIKVW 135
Query: 176 DVRSFDKGPFSNFKFAAEKEC--------DW-TGIKFSADGKYILISTNGS---IIRTFD 223
D + G + D I F GK + S S I+ +D
Sbjct: 136 DYET---G-----------DFERTLKGHTDSVQDISFDHSGKLL-AS--CSADMTIKLWD 178
Query: 224 AYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHP 283
+C++T+ G +N S P+ +++S S D I +W + G+ V H
Sbjct: 179 FQGFECIRTMHGHDHNVSS---VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG-HR 234
Query: 284 SPVQTIQFNPKFNMMASA 301
V+ ++ N ++AS
Sbjct: 235 EWVRMVRPNQDGTLIASC 252
Score = 65.7 bits (161), Expect = 4e-12
Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 2/116 (1%)
Query: 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHA 81
+ G L+S S D I ++D G T+ V + F + +
Sbjct: 297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC 356
Query: 82 STKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLR 137
+ D T+R + + ++ H V SL ++GS D+TV++W+ R
Sbjct: 357 AD--DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 36.0 bits (84), Expect = 0.015
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 237 LNNKGCPLEASFTPDSKYVISG---STDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
L K LE+ + SG W K + + H SPV + F+P
Sbjct: 61 LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYAL--SGHRSPVTRVIFHP 118
Query: 294 KFNMMASAC 302
F++M SA
Sbjct: 119 VFSVMVSAS 127
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 119 bits (299), Expect = 1e-30
Identities = 44/329 (13%), Positives = 98/329 (29%), Gaps = 41/329 (12%)
Query: 19 ENTDKITSIDYS--ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
E +KI I + + + + D I ++ + ++ K R
Sbjct: 91 EIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVT 150
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
+ D + S + HT +NS+ ++ +T++S + D + LW L
Sbjct: 151 TLRVPVFRPMDLMVEASPRR----IFANAHTYHINSISINSDYETYLS-ADDLRINLWHL 205
Query: 137 RSPNCQGIM----------HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS------- 179
+ + F + TI+L D+R+
Sbjct: 206 EITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265
Query: 180 ----FDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG 235
+ SN F +E + +KFS G+Y++ S+ + ++T
Sbjct: 266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQV 325
Query: 236 FLNNKGC------------PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHP 283
+ E + V++GS + +++ + L+A
Sbjct: 326 HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRE 384
Query: 284 SPVQTIQFNPKFNMMASACTNLAFWIPTY 312
+ P+ + + +
Sbjct: 385 NNKPRTVLKPRKVCASGKRKKDEISVDSL 413
Score = 82.1 bits (202), Expect = 1e-17
Identities = 39/309 (12%), Positives = 91/309 (29%), Gaps = 59/309 (19%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
D I++++++ G LL + + ++VI+ E ++ +Y V +H +
Sbjct: 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYL 87
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD--TFISGSYDKTVRLWDLRS 138
S +I++ K+N + P + F+ + DKT++LW +
Sbjct: 88 KSLEIEE---------------------KINKIRWLPQKNAAQFLLSTNDKTIKLWKISE 126
Query: 139 PNCQGIMH----VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEK 194
+ + + G + ++ R F
Sbjct: 127 RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH---------- 176
Query: 195 ECDWTGIKFSADGKYILISTNGSIIRTFDA-YNGQCLQTLAGFLNN----KGCPLEASFT 249
I ++D + L + + I + + + N A F
Sbjct: 177 TYHINSISINSDYETYLSADDLR-INLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH 235
Query: 250 P-DSKYVISGSTDGRIHIW---------------NAEKGFKVCVLDADHPSPVQTIQFNP 293
P + S+ G I + + ++ S + ++F+
Sbjct: 236 PNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH 295
Query: 294 KFNMMASAC 302
M +
Sbjct: 296 SGRYMMTRD 304
Score = 56.7 bits (136), Expect = 3e-09
Identities = 20/200 (10%), Positives = 47/200 (23%), Gaps = 31/200 (15%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG 164
++++ + + +G V ++ N
Sbjct: 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS-------------------- 65
Query: 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFS--ADGKYILISTNGSIIRTF 222
+S P ++ + E E I++ + L+STN I+ +
Sbjct: 66 ---HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLW 122
Query: 223 DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADH 282
G + + + + D + H
Sbjct: 123 KISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA------H 176
Query: 283 PSPVQTIQFNPKFNMMASAC 302
+ +I N + SA
Sbjct: 177 TYHINSISINSDYETYLSAD 196
Score = 46.7 bits (110), Expect = 6e-06
Identities = 21/162 (12%), Positives = 48/162 (29%), Gaps = 30/162 (18%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
F E I+ + +S G +++ + ++D + + +
Sbjct: 281 FSEIISSISDVKFSHSGRYMMTRD-YLSVKVWDLNMENRPVETYQVHEYL---------- 329
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
+ SL++N I C + D ++GSY+ R++D
Sbjct: 330 -----------RSKLCSLYENDCIFDK-------FECCWNGSDSVVMTGSYNNFFRMFDR 371
Query: 137 RSPNC-QGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDV 177
+ ++P P + D I + +
Sbjct: 372 NTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSL 413
Score = 29.3 bits (65), Expect = 1.7
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 256 ISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302
++G+ G W + D + T++FN ++A+
Sbjct: 1 MAGAGGGNDIQWCFSQVKGAVDDDVAEADIISTVEFNHSGELLATGD 47
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40
beta-barrel fold, DNA D DNA repair, HOST-virus
interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB:
3ei4_B*
Length = 435
Score = 117 bits (296), Expect = 5e-30
Identities = 34/312 (10%), Positives = 88/312 (28%), Gaps = 67/312 (21%)
Query: 5 DNVIRSYKVAKLFRENTDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKK 63
+ + SY++ + + TS+ + + S+ I++++ +
Sbjct: 103 LHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT------ 156
Query: 64 YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI 123
G + L +P++
Sbjct: 157 ------------------------------------FIKGIGAGGSITGLKFNPLNTNQF 180
Query: 124 -SGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA---AFDPEGLIFGVGVNSDTIKLYDVRS 179
+ S + T RL D + + + G N + L ++
Sbjct: 181 YASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG 240
Query: 180 FDKGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAG 235
+ K T + + + L + S+ ++ +D + +
Sbjct: 241 KELWNLRMHK-------KKVTHVALNPCCDWFLAT--ASVDQTVKIWDLRQVRGKASFLY 291
Query: 236 FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQT------I 289
L ++ A F+PD +++ I +++A + L HP
Sbjct: 292 SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI-PHPHRHFQHLTPIKA 350
Query: 290 QFNPKFNMMASA 301
++P++N++
Sbjct: 351 AWHPRYNLIVVG 362
Score = 100 bits (252), Expect = 4e-24
Identities = 40/267 (14%), Positives = 77/267 (28%), Gaps = 53/267 (19%)
Query: 18 RENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQA 77
S+D SA ++++ +++ + + G + K V +
Sbjct: 206 DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDW 264
Query: 78 AIHASTKIDDTVR---YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRL 133
+ A+ +D TV+ + Y H VN+ C SP D + + +R+
Sbjct: 265 FL-ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRV 322
Query: 134 WDLRSPNCQGIMHVSGSRPI-------AAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFS 186
+ +C + R AA+ P + VG
Sbjct: 323 YSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG-------------------- 362
Query: 187 NFKFAAEKECDWTGIKFSADGKYILI-STNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLE 245
D + I FD +G+ + L ++ L
Sbjct: 363 ----------------RYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLN 406
Query: 246 ASFTPDSKYVISGSTDGRIHIWNAEKG 272
F P + S I IW+ ++
Sbjct: 407 E-FNPMGDTLASAM-GYHILIWSQQEA 431
Score = 95.1 bits (237), Expect = 5e-22
Identities = 36/236 (15%), Positives = 72/236 (30%), Gaps = 21/236 (8%)
Query: 81 ASTKIDDTVRYLS---LHD---NKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRL 133
+ L LH + ++ ++ SL P + + GS + L
Sbjct: 87 GRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIML 146
Query: 134 WDLRSPNCQGIMHVSG-SRPI--AAFDPE-GLIFGVGVNSDTIKLYDVRSFDKGPFSNFK 189
W+ + + G I F+P F T +L D + F
Sbjct: 147 WNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG---NILRVFA 203
Query: 190 FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249
+ + + SA + ++ N + + +G+ L L +K +
Sbjct: 204 SSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM-DGKELWNLRM---HKKKVTHVALN 259
Query: 250 PDSKYVI-SGSTDGRIHIWNAEKGFKVCVLDAD--HPSPVQTIQFNPKFNMMASAC 302
P + + + S D + IW+ + H PV F+P + +
Sbjct: 260 PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD 315
Score = 60.9 bits (148), Expect = 2e-10
Identities = 18/142 (12%), Positives = 46/142 (32%), Gaps = 23/142 (16%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ + +S DG L++ + +I +Y + + + +AA H
Sbjct: 296 RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL--IPHPHRHFQHLTPIKAAWH 353
Query: 81 ASTKI-------DDTVRYLSLHDNKYIR------------YFPGHTKKVNSLC-LSPIDD 120
+ D + + ++ + I + + ++SL +P+ D
Sbjct: 354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD 413
Query: 121 TFISGSYDKTVRLWDLRSPNCQ 142
T S + +W + +
Sbjct: 414 TLASAM-GYHILIWSQQEARTR 434
Score = 54.7 bits (132), Expect = 1e-08
Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 199 TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD-SKYVIS 257
G + L S + T D + + LQ A F ++ P V
Sbjct: 86 LGRASWPSVQQGL---QQSFLHTLD--SYRILQKAAPFDRRATS---LAWHPTHPSTVAV 137
Query: 258 GSTDGRIHIWNAEKGFKVCVLDAD-HPSPVQTIQFNPK-FNMMASA 301
GS G I +WN K + + ++FNP N ++
Sbjct: 138 GSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS 183
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 117 bits (294), Expect = 4e-29
Identities = 66/299 (22%), Positives = 117/299 (39%), Gaps = 37/299 (12%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+D++ ID+ +++ ++ I++ E R++ + V +F K I
Sbjct: 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV 72
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
S D +R + + + + F H + S+ + P +SGS D TV+LW+ +
Sbjct: 73 GSD--DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130
Query: 141 CQG---------IMHVSGSRPIAAFDP-EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKF 190
+M V AF+P + F G T+K++ + NF
Sbjct: 131 ALEQTFEGHEHFVMCV-------AFNPKDPSTFASGCLDRTVKVWSLGQ----STPNFTL 179
Query: 191 AAEKECDWTGIKFSA--DGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLE 245
+E + + D Y+ I+ S I+ +D C+ TL G ++N
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYM-IT--ASDDLTIKIWDYQTKSCVATLEGHMSNVSF--- 233
Query: 246 ASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP--KFNMMASAC 302
A F P +ISGS DG + IWN+ L+ I +P + N +AS
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV-GLERSWCIATHPTGRKNYIASGF 291
Score = 94.8 bits (236), Expect = 1e-21
Identities = 36/202 (17%), Positives = 67/202 (33%), Gaps = 52/202 (25%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLI 162
F + +V + P + ++ Y V +W+ + + V+ +
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETP----------- 57
Query: 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTF 222
VR+ KF A +I++ ++ IR F
Sbjct: 58 --------------VRA---------------------GKFIARKNWIIVGSDDFRIRVF 82
Query: 223 DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKV-CVLDAD 281
+ G+ + + + P YV+SGS D + +WN E + + +
Sbjct: 83 NYNTGEKVVDFEAHPDYIRS---IAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-G 138
Query: 282 HPSPVQTIQFNPK-FNMMASAC 302
H V + FNPK + AS C
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGC 160
Score = 91.7 bits (228), Expect = 2e-20
Identities = 40/282 (14%), Positives = 84/282 (29%), Gaps = 23/282 (8%)
Query: 13 VAKLFRENTDKITSIDYSA--DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIR 70
L + +DY D +I+ S+D I I+D + + T+ V
Sbjct: 176 NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV 235
Query: 71 FTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP-IDDTFISGSYDK 129
F H I S D T++ + K + ++ + P +I+ +D
Sbjct: 236 F-HPTLPII-ISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293
Query: 130 TVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDK-GPFSNF 188
+ L + + G + + + I+ + D+
Sbjct: 294 GFTVLSLGNDEPTLSLDPVGKL---VWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTK 350
Query: 189 KFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247
+ + + S +G+++ + +G + LA G +
Sbjct: 351 EL--GSVDVFPQSLAHSPNGRFVTVVGDGEYVIY---------TALAWRNKAFGKCQDFV 399
Query: 248 FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTI 289
+ PDS G+I + K V S + +
Sbjct: 400 WGPDSNSYALIDETGQIKYYKNFKE--VTSWSVPMHSAIDRL 439
Score = 90.9 bits (226), Expect = 3e-20
Identities = 44/298 (14%), Positives = 91/298 (30%), Gaps = 26/298 (8%)
Query: 12 KVAKLFRENTDKITSIDYS-ADGLLLISCSEDDQIVIYDCELGTNKRTVFSK-KYGVDLI 69
+ + F + + + ++ D S D + ++ T T+ + + GV+ +
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
Query: 70 RFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDK 129
+ + D T++ + GH V+ P ISGS D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 130 TVRLWDLRSPNCQGIMHVSGSRPIA-AFDPEGLIFGVGVNSD-TIKLYDVRS----FDKG 183
T+++W+ + + ++V R A P G + D + + +
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLD 310
Query: 184 PFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCP 243
P ++ K + I F+A + + + L P
Sbjct: 311 PVGKLVWSGGKNAAASDI-FTAVIRGNEEVEQDEPLS-------LQTKELGS---VDVFP 359
Query: 244 LEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
+ +P+ ++V DG I+ A Q + P N A
Sbjct: 360 QSLAHSPNGRFVTVVG-DGEYVIYTALAWRN------KAFGKCQDFVWGPDSNSYALI 410
Score = 78.6 bits (194), Expect = 3e-16
Identities = 34/292 (11%), Positives = 86/292 (29%), Gaps = 34/292 (11%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
+ ++ + ++IS SED + I++ ++T+ I +
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
AS D+ LSL +++ K V S + S + +R +
Sbjct: 284 KNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAA----ASDIFTAVIRGNEE 338
Query: 137 RSPNCQGIMHV------SGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKF 190
+ + A P G V +Y ++ F +
Sbjct: 339 VEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVV-GDGEYVIYTALAWRNKAFGKCQ- 396
Query: 191 AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP 250
+ D + I+ + + ++ ++ F
Sbjct: 397 ---------DFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPM-----HSAIDRLF-- 440
Query: 251 DSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302
S ++ +DG ++ ++ + G V +D + + + ++ ++
Sbjct: 441 -SGALLGVKSDGFVYFFDWDNGTLVRRIDVN----AKDVIWSDNGELVMIVN 487
Score = 77.0 bits (190), Expect = 1e-15
Identities = 37/278 (13%), Positives = 81/278 (29%), Gaps = 42/278 (15%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRT 58
D ++ +YKV K ++ I G I+ D+ + +
Sbjct: 249 DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLS 308
Query: 59 VFSKKYGVDLIRFTHAKQAAIH--ASTKIDDTVRY-----LSLHDNKYIRYFPGHTKKVN 111
+ V + ++ K AA + I LSL +
Sbjct: 309 L----DPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKE----LGSVDVFPQ 360
Query: 112 SLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDT 171
SL SP + F++ D ++ + G + P+ + + +
Sbjct: 361 SLAHSP-NGRFVTVVGDGEYVIYTALA----WRNKAFGKCQDFVWGPDSNSYALIDETGQ 415
Query: 172 IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQ 231
IK Y A + G + + ++G + FD NG ++
Sbjct: 416 IKYYKNFKEVTSWSVPMHSAID---------RLFSGALLGVKSDGFV-YFFDWDNGTLVR 465
Query: 232 TLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNA 269
+ + ++ + + V+ +T+ +
Sbjct: 466 RI------DVNAKDVIWSDNGELVMIVNTNSNGDEASG 497
Score = 52.0 bits (125), Expect = 1e-07
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 226 NGQCLQTLAGFLNN-KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPS 284
+T + + KG F P +V++ GR+ IWN E +V + +
Sbjct: 2 KLDIKKTFSNRSDRVKGI----DFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ-VTET 56
Query: 285 PVQTIQFNPKFNMMASA 301
PV+ +F + N +
Sbjct: 57 PVRAGKFIARKNWIIVG 73
Score = 44.3 bits (105), Expect = 4e-05
Identities = 36/294 (12%), Positives = 77/294 (26%), Gaps = 54/294 (18%)
Query: 4 TDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKK 63
D Y + K + D E QI Y +V
Sbjct: 375 GDGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSV-PMH 433
Query: 64 YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI 123
+D + K D V + + +R + + S + +
Sbjct: 434 SAIDRLFSGAL------LGVKSDGFVYFFDWDNGTLVRRIDVN---AKDVIWSDNGELVM 484
Query: 124 SGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG---VGVNSDTIK------- 173
+ + + ++ + D EG+ + S++I
Sbjct: 485 IVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVGD 544
Query: 174 ------------------LYDVRSFDKGPF-------SNFKFAAEKECDWTGIKFSAD-G 207
Y++ + K + N + A++E G + S +
Sbjct: 545 VFIFTTATNRLNYFVGGKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYEISLEVL 604
Query: 208 KYILISTNG------SIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKY 254
++ ++ G + + L +A FL + EA + +PD
Sbjct: 605 EFQTLTLRGEIEEAIENVLP-NVEGKDSLTKIARFLEGQEYYEEALNISPDQDQ 657
>3ow8_A WD repeat-containing protein 61; structural genomics consortium,
SGC, transcriptio; 2.30A {Homo sapiens}
Length = 321
Score = 111 bits (281), Expect = 1e-28
Identities = 58/294 (19%), Positives = 99/294 (33%), Gaps = 60/294 (20%)
Query: 36 LISCSEDDQIVIYDCELGTNKRT-----------VFSKKYGVDLIRFTHAKQAAIHASTK 84
S ++ + G + + + +
Sbjct: 5 HHHSSRENLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETV---------VTGS 55
Query: 85 IDDTVRYLSLHDNKYIRYFP--GHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNC 141
+DD V+ D + + GH V S+ +S S S D +RLWDL +
Sbjct: 56 LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIRLWDLENGKQ 114
Query: 142 QGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC--- 196
+ + + AF P+ G + + ++ V S +
Sbjct: 115 IKSIDAGPVDAWTL-AFSPDSQYLATGTHVGKVNIFGVES--------------GKKEYS 159
Query: 197 -----DW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247
+ I +S DGKY+ S G+ II FD G+ L TL G + +
Sbjct: 160 LDTRGKFILSIAYSPDGKYL-AS--GAIDGIINIFDIATGKLLHTLEG---HAMPIRSLT 213
Query: 248 FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
F+PDS+ +++ S DG I I++ + L H S V + F P S+
Sbjct: 214 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSS 266
Score = 109 bits (275), Expect = 9e-28
Identities = 50/310 (16%), Positives = 103/310 (33%), Gaps = 71/310 (22%)
Query: 5 DNVIR-------SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR 57
D++++ + + + S+D S + S S D I ++D E G +
Sbjct: 57 DDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIK 116
Query: 58 TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP 117
++ + + F+ Q + V + K K + S+ SP
Sbjct: 117 SIDAGPVDAWTLAFSPDSQYLATGTH--VGKVNIFGVESGKKEYSLDTRGKFILSIAYSP 174
Query: 118 IDDTFI-SGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKL 174
D ++ SG+ D + ++D+ + + H
Sbjct: 175 -DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP------------------------- 208
Query: 175 YDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQ 231
+RS + FS D + + ++ S I+ +D +
Sbjct: 209 --IRS---------------------LTFSPDSQLL-VT--ASDDGYIKIYDVQHANLAG 242
Query: 232 TLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQF 291
TL+G + L +F PD + +S S+D + +W+ V DH V +++
Sbjct: 243 TLSG---HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF-DHQDQVWGVKY 298
Query: 292 NPKFNMMASA 301
N + + S
Sbjct: 299 NGNGSKIVSV 308
Score = 105 bits (264), Expect = 3e-26
Identities = 39/260 (15%), Positives = 84/260 (32%), Gaps = 63/260 (24%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
++ +S D L + + ++ I+ E G + ++ ++ + I ++ +
Sbjct: 118 IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK 177
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWD 135
AS ID + + K + GH + SL SP D + + S D ++++D
Sbjct: 178 --YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYD 234
Query: 136 LRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE 193
++ N G + H S V +
Sbjct: 235 VQHANLAGTLSGHASW-----------------VLN------------------------ 253
Query: 194 KECDWTGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP 250
+ F D + +S S ++ +D C+ T + +
Sbjct: 254 -------VAFCPDDTHF-VS--SSSDKSVKVWDVGTRTCVHTFFDHQDQVWG---VKYNG 300
Query: 251 DSKYVISGSTDGRIHIWNAE 270
+ ++S D IHI++
Sbjct: 301 NGSKIVSVGDDQEIHIYDCP 320
Score = 47.5 bits (114), Expect = 3e-06
Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 208 KYILISTNG-SIIRTFDAYNGQCLQTLAG---------FLNNKGCPLEASFTPDSKYVIS 257
+ ++ ++ G + + N +S+ V++
Sbjct: 2 HHHHHHSSRENLYFQGTNQYGILFKQEQAHDDAIWSVAWGTN--------KKENSETVVT 53
Query: 258 GSTDGRIHIWNAEKGFKVCV--LDADHPSPVQTIQFNPKFNMMASA 301
GS D + +W L+ H V ++ + + AS+
Sbjct: 54 GSLDDLVKVWKWRDERLDLQWSLEG-HQLGVVSVDISHTLPIAASS 98
Score = 38.6 bits (91), Expect = 0.002
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCEL 52
F ++ D++ + Y+ +G ++S +D +I IYDC +
Sbjct: 286 FFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCPI 321
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 112 bits (282), Expect = 3e-28
Identities = 39/305 (12%), Positives = 96/305 (31%), Gaps = 67/305 (21%)
Query: 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAA 78
+ K +D+S + ++ ++ + +Y N
Sbjct: 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINS------------------- 105
Query: 79 IHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLR 137
+ F H+ V ++ + D + SG + + +WD+
Sbjct: 106 ---------------------MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144
Query: 138 SPNCQGIMHVSGSRPIA----------AFDP-EGLIFGVGVNSDTIKLYDVRSFDKGPFS 186
+ + + A++ +F +S+ ++D+++ K
Sbjct: 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA--KKEVI 202
Query: 187 NFKFAAEKEC---DWTGIKFSADGKYILISTNGS----IIRTFDAYNGQC-LQTLAGFLN 238
+ + + + +++ + + GS I +D N LQTL
Sbjct: 203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTL--NQG 260
Query: 239 NKGCPLEASFTP-DSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKF-N 296
++ L + D ++S D + +WN E ++ A + +F P+ +
Sbjct: 261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA-RGNWCFKTKFAPEAPD 319
Query: 297 MMASA 301
+ A A
Sbjct: 320 LFACA 324
Score = 84.3 bits (209), Expect = 2e-18
Identities = 36/271 (13%), Positives = 80/271 (29%), Gaps = 43/271 (15%)
Query: 21 TDKITSIDYSAD-GLLLISCSEDDQIVIYDCELGTNKRTVFSK------KYGVDLIRF-- 71
D++ S+ ++ + S + I+D + + K + ++ +
Sbjct: 165 VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224
Query: 72 THAKQAAIHASTKIDDTVR--YLSLHDNKYIRYFPGHTKKVNSLCLSPID-DTFISGSYD 128
++ + A + D ++ L + GH K + SL D +S D
Sbjct: 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD 284
Query: 129 KTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG-LIFGVGVNSDTIKLYDVRSFDKGPF 185
TV LW+ S + F PE +F + I++ +++
Sbjct: 285 NTVLLWNPESAEQLSQFPARGNWCFKT-KFAPEAPDLFACASFDNKIEVQTLQNL----- 338
Query: 186 SNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK----- 240
+ D + S ++ + + + + +
Sbjct: 339 ----------------TNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWY 382
Query: 241 GCPLE-ASFTPDSKYVISGSTDGRIHIWNAE 270
G P A + K V + I N +
Sbjct: 383 GEPSPAAHWAFGGKLVQITPDGKGVSITNPK 413
Score = 83.5 bits (207), Expect = 4e-18
Identities = 28/228 (12%), Positives = 70/228 (30%), Gaps = 27/228 (11%)
Query: 86 DDTVRYLSLHD-NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGI 144
V+ L + ++ + H K + + + S D ++ LW L + + +
Sbjct: 4 GSMVK---LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP 60
Query: 145 M--HVSGSRPIA-AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDW-TG 200
+ S+ + I +++ +++LY + S +F
Sbjct: 61 IASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARF--SNHSSSVKT 118
Query: 201 IKFS-ADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA--------SFTPD 251
+KF+ + N I +D + L + ++
Sbjct: 119 VKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPL--TPGQSMSSVDEVISLAWNQS 176
Query: 252 SKYVI-SGSTDGRIHIWNAEKGFKVCVLDAD-----HPSPVQTIQFNP 293
+V S + IW+ + +V L + ++++P
Sbjct: 177 LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224
Score = 68.9 bits (169), Expect = 3e-13
Identities = 21/181 (11%), Positives = 51/181 (28%), Gaps = 53/181 (29%)
Query: 125 GSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGP 184
G+ V+L + A+ + + V
Sbjct: 1 GAMGSMVKLAEFSRTATF------------AWSHDKIPLLV------------------- 29
Query: 185 FSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244
+ G + S + + + +A +
Sbjct: 30 -----------------SGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKF-N 71
Query: 245 EASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD---HPSPVQTIQFNPK-FNMMAS 300
+ ++ ++K + +G + +++ + A H S V+T++FN K N++AS
Sbjct: 72 DLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLAS 131
Query: 301 A 301
Sbjct: 132 G 132
Score = 26.9 bits (60), Expect = 9.9
Identities = 12/128 (9%), Positives = 33/128 (25%), Gaps = 13/128 (10%)
Query: 17 FRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAK 75
F + ++ + L S D++I + + TN ++ + +
Sbjct: 301 FPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN---TLDEQETETKQQESETD 357
Query: 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135
+ + + L + + + + K V +
Sbjct: 358 FWNNVSREESKEKPSVFHLQAPTWYG------EPSPAAHWAFGGKLVQITPDGKGVSIT- 410
Query: 136 LRSPNCQG 143
+P G
Sbjct: 411 --NPKISG 416
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 113 bits (285), Expect = 5e-28
Identities = 43/332 (12%), Positives = 95/332 (28%), Gaps = 61/332 (18%)
Query: 5 DNVIRSYKVA-----KLFRENTDKITSIDYS---ADGLLLISCSEDDQIVIYDCELGTNK 56
D I + K ++ + + ++ D + D I ++D
Sbjct: 228 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV 287
Query: 57 RTVF--SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGH-------- 106
+ ++ G + I S +D T+ + L ++ ++ GH
Sbjct: 288 QKWTLDKQQLGNQQVGVVATGNGRI-ISLSLDGTLNFYELGHDEVLKTISGHNKGITALT 346
Query: 107 -------------------------TKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC 141
+ + SL S + S S+D T+++ +
Sbjct: 347 VNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSK-AQEYSSISWDDTLKVNGITKHEF 405
Query: 142 QGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGI 201
V A+ + +G V N D + + + D +
Sbjct: 406 GSQPKV------ASANNDGFTA-VLTNDDDLLILQSFTGD----IIKSVRLNSPGSAVSL 454
Query: 202 KFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD 261
+ + + + D L+T + P S +P Y+ +G
Sbjct: 455 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP-----LRAKPSYISISPSETYIAAGDVM 509
Query: 262 GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
G+I +++ + A S + I + P
Sbjct: 510 GKILLYDLQSREVKTSRWAFRTSKINAISWKP 541
Score = 108 bits (271), Expect = 3e-26
Identities = 42/297 (14%), Positives = 91/297 (30%), Gaps = 33/297 (11%)
Query: 20 NTDKITSIDYS--ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG--------VDLI 69
+ +T++ +S L S E +++++ +V + I
Sbjct: 63 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 122
Query: 70 RFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF--ISGSY 127
+ + D+ ++S + GH++++N+ L ++
Sbjct: 123 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ-SRPMRSMTVGD 181
Query: 128 DKTVRLWDLRSPNCQGIMHV-SG-SRPI--AAFDP-EGLIFGVGVNSD-TIKLYDVRSFD 181
D +V + + F P G + V SD I +D +S +
Sbjct: 182 DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFV-ITVGSDRKISCFDGKSGE 240
Query: 182 -KGPFSNFKFAAEKECDW-TGIKFS---ADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236
E + + G F+ D + + IR +D +C+Q
Sbjct: 241 FLKYI-------EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD 293
Query: 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
G + +IS S DG ++ + + + H + + NP
Sbjct: 294 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISG-HNKGITALTVNP 349
Score = 101 bits (254), Expect = 5e-24
Identities = 43/306 (14%), Positives = 79/306 (25%), Gaps = 78/306 (25%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ T + Y +
Sbjct: 18 RNFTTHLSYDPTTNAIAYPCGKSA------------------------------------ 41
Query: 81 ASTKIDDTVRYLSLHDNKY--IRYFPGH-TKKVNSLCLSPIDD--TFISGSYDKTVRLWD 135
VR L D+K + F GH + V ++ SPI SG V +W
Sbjct: 42 -------FVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94
Query: 136 LRSPNCQGIMHVSGSRPIA---------AFDPEG-LIFGVGVNSD-TIKLYDVRSFD-KG 183
+ V+ ++D EG + VG D S + G
Sbjct: 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLG 154
Query: 184 PFSNFKFAAEKECDW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNN 239
S ++ + + + +
Sbjct: 155 EVSGHS-------QRINACHLKQSRPMRSMT--VGDDGSVVFYQGPPFKFSASDRTHHKQ 205
Query: 240 KGCPLEASFTPDS-KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKF--- 295
+ F+PDS ++VI+ +D +I ++ + G + ++ D PVQ F +
Sbjct: 206 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE-DDQEPVQGGIFALSWLDS 264
Query: 296 NMMASA 301
A+
Sbjct: 265 QKFATV 270
Score = 99.2 bits (248), Expect = 4e-23
Identities = 44/303 (14%), Positives = 97/303 (32%), Gaps = 52/303 (17%)
Query: 17 FRENTDKITSIDYSAD-GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAK 75
+ + +++S D G +I+ D +I +D + G + + + V F
Sbjct: 202 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA--- 258
Query: 76 QAAIHASTKI-----DDTVRYLSLHDNKYIRYFPGHTKKVNSL---CLSPIDDTFISGSY 127
+ S K D T+R + +K ++ + +++ + ++ + IS S
Sbjct: 259 -LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 317
Query: 128 DKTVRLWDLRSPNCQGIM--HVSGSRPI--AAFDPEGLIFGVGVNSD--TIKLYDVRSFD 181
D T+ ++L + H ++ I +P LI G S I + S
Sbjct: 318 DGTLNFYELGHDEVLKTISGH---NKGITALTVNP--LISG----SYDGRIMEWSSSSMH 368
Query: 182 KGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
+ + + S +Y IS + ++ + +
Sbjct: 369 QD-----------HSNLIVSLDNSKAQEYSSISWDDTL-KVNGITKHEFGSQPKV----- 411
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
AS D + D + I + G + + + P ++ N +
Sbjct: 412 -----ASANNDGF-TAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEE 465
Query: 301 ACT 303
T
Sbjct: 466 GNT 468
Score = 96.9 bits (242), Expect = 2e-22
Identities = 44/305 (14%), Positives = 80/305 (26%), Gaps = 82/305 (26%)
Query: 5 DNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY 64
D I + + + +++++ I S+D S S S DD + +
Sbjct: 356 DGRIMEWSSSSMHQDHSNLIVSLDNS-KAQEYSSISWDDTLKVNGITKHEFGSQP----- 409
Query: 65 GVDLIRFTHAKQAAIH-----ASTKIDDTVRYLSLHDNKYIRYFPGH-TKKVNSLCLSPI 118
K A+ + A DD + L I+ + SL + +
Sbjct: 410 ----------KVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYV 459
Query: 119 DDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVR 178
G+ + +L DL + I+ P G I LYD++
Sbjct: 460 AVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYIS-ISPSETYIAAGDVMGKILLYDLQ 518
Query: 179 SFDKGPFSNFKFAAEKEC---DWTG-------IKFSADGKYILISTNGSIIRTFDAYNGQ 228
S +E W I + K
Sbjct: 519 S--------------REVKTSRWAFRTSKINAISWKPAEKG------------------- 545
Query: 229 CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQT 288
+ V +GS D I I++ ++ K+ H V
Sbjct: 546 ----------------ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNN 589
Query: 289 IQFNP 293
+ +
Sbjct: 590 LLWET 594
Score = 80.0 bits (198), Expect = 1e-16
Identities = 24/204 (11%), Positives = 53/204 (25%), Gaps = 18/204 (8%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYD-KTVRLWDLRSPNCQGIMHVSG--SRPI--AAFDPE 159
L P + VR D ++ +G S + F P
Sbjct: 16 TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI 75
Query: 160 --GLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC--DW-TGIKFSADGKYILIST 214
G S + ++ + +E + + I + +G+ + +
Sbjct: 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 135
Query: 215 NGS--IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKY-VISGSTDGRIHIWNAEK 271
G +G L ++G + ++ DG + +
Sbjct: 136 EGRDNFGVFISWDSGNSLGEVSG---HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP 192
Query: 272 GFKVCVLDA--DHPSPVQTIQFNP 293
S V+ ++F+P
Sbjct: 193 FKFSASDRTHHKQGSFVRDVEFSP 216
Score = 73.0 bits (180), Expect = 2e-14
Identities = 27/149 (18%), Positives = 56/149 (37%), Gaps = 17/149 (11%)
Query: 4 TDNVIRSYKV------AKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR 57
N I+ +K+ L K + I S + + +I++YD + K
Sbjct: 465 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT 524
Query: 58 TVFSK-KYGVDLIRFTHAKQAAIH--------ASTKIDDTVRYLSLHD-NKYIRYFPGHT 107
+ ++ ++ I + A++ A A+ +D + S+ K I+ H
Sbjct: 525 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 584
Query: 108 KKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
VN+L T +S D ++ W++
Sbjct: 585 DGVNNLLWET-PSTLVSSGADACIKRWNV 612
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage
repair; HET: DNA; 3.31A {Homo sapiens}
Length = 408
Score = 111 bits (279), Expect = 8e-28
Identities = 51/288 (17%), Positives = 89/288 (30%), Gaps = 77/288 (26%)
Query: 21 TDKITSIDYS-ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAI 79
I ++D +G ++S D IV+YD E + + K
Sbjct: 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPD------ 96
Query: 80 HASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRS 138
H V ++ P D F S S+DKT+++WD +
Sbjct: 97 -------------------------VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT 131
Query: 139 PNCQGIMHVSGSRPIAAFDPEGLIFGV---GVNSDTIKLYDVRSFDKGPFSNFKFAAEKE 195
+ + + P + G ++L D++S
Sbjct: 132 LQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS--------------GS 177
Query: 196 C--------DW-TGIKFSADGKYILISTNGSI---IRTFDAYNGQ-CLQTLAGFLNNKGC 242
C + +S YIL + S ++ +D CL TL K
Sbjct: 178 CSHILQGHRQEILAVSWSPRYDYILAT--ASADSRVKLWDVRRASGCLITLDQHNGKKSQ 235
Query: 243 PLEA------------SFTPDSKYVISGSTDGRIHIWNAEKGFKVCVL 278
+E+ FT D ++++ TD R+ +WN+ G V
Sbjct: 236 AVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVN 283
Score = 105 bits (264), Expect = 8e-26
Identities = 43/237 (18%), Positives = 83/237 (35%), Gaps = 35/237 (14%)
Query: 80 HASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRS 138
+ + T R L L NK H +N+L + P++ ++ SG D + L+DL +
Sbjct: 16 LRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLEN 75
Query: 139 PNCQGIMHVSGSRPIAAFDPEGLIFGV-GVN------------SD--TIKLYDVRSFDKG 183
+ Q I P+ + V V S T+K++D +
Sbjct: 76 SSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA 135
Query: 184 PFSNFKFAAEKECDW-TGIKFSADGK--YILISTNGS---IIRTFDAYNGQCLQTLAGFL 237
NF+ + S ++ G+ ++ D +G C L G
Sbjct: 136 DVFNFE-------ETVYSHHMSPVSTKHCLVAV--GTRGPKVQLCDLKSGSCSHILQG-- 184
Query: 238 NNKGCPLEASFTPDSKYVI-SGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
++ L S++P Y++ + S D R+ +W+ + + H +
Sbjct: 185 -HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240
Score = 99.2 bits (248), Expect = 1e-23
Identities = 42/283 (14%), Positives = 74/283 (26%), Gaps = 79/283 (27%)
Query: 21 TDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAI 79
+I ++ +S +L + S D ++ ++D + + G A
Sbjct: 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA----- 240
Query: 80 HASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRS 138
H KVN LC + D + + D +RLW+ +
Sbjct: 241 -----------------------NTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSN 276
Query: 139 PNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDW 198
+ + ++K +
Sbjct: 277 GENTLVNYGKVCNN---------------------------------------SKKGLKF 297
Query: 199 TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISG 258
+ GS I + Y+G+ + L G C F + + + SG
Sbjct: 298 --TVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDC---CVFQSNFQELYSG 352
Query: 259 STDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
S D I W V D Q NP F S+
Sbjct: 353 SRDCNILAWVPSLYEPV----PDDDETTTKSQLNPAFEDAWSS 391
Score = 78.4 bits (194), Expect = 2e-16
Identities = 25/171 (14%), Positives = 57/171 (33%), Gaps = 16/171 (9%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF--SKKYGVDLIRFTHAKQAA 78
K+ + +++DGL L++ D+++ +++ G N + ++FT +
Sbjct: 245 NGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT----VS 300
Query: 79 IHASTKI-----DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRL 133
S++ T+ +++ + I GH K V+ SGS D +
Sbjct: 301 CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA 360
Query: 134 WDLRSPNC-QGIMHVSGSRPIAAFDPEGLIFGVGVNSD-TIKLYDVRSFDK 182
W + +P + + + F+K
Sbjct: 361 WVPSLYEPVPD--DDETTTKS-QLNPAFEDAWSSSDEEGGTSAWSHPQFEK 408
Score = 75.0 bits (185), Expect = 3e-15
Identities = 28/197 (14%), Positives = 63/197 (31%), Gaps = 29/197 (14%)
Query: 116 SPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDP-EG--LIFGVGVNSD 170
+ ++D + T R+ L + + H G + +P EG ++ G
Sbjct: 10 TGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTL-DIEPVEGRYMLSG----GS 64
Query: 171 --TIKLYDVRS-------FDKGPFSNFKFAAEKECDW-TGIKFS-ADGKYILISTNGSII 219
I LYD+ + K S + + +++ D S+ +
Sbjct: 65 DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTL 124
Query: 220 RTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK---YVISGSTDGRIHIWNAEKGFKVC 276
+ +D Q + +P S V G+ ++ + + + G
Sbjct: 125 KVWDTNTLQTADVFNF----EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH 180
Query: 277 VLDADHPSPVQTIQFNP 293
+L H + + ++P
Sbjct: 181 ILQG-HRQEILAVSWSP 196
Score = 48.8 bits (117), Expect = 1e-06
Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 18/105 (17%)
Query: 203 FSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTP-DSKYVISGST 260
+ + + S R + + P + +Y++SG +
Sbjct: 9 QTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGG----GINTLDIEPVEGRYMLSGGS 64
Query: 261 DGRIHIWNAEKGFKVCVLDAD------------HPSPVQTIQFNP 293
DG I +++ E + H V+T+Q+ P
Sbjct: 65 DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYP 109
Score = 39.2 bits (92), Expect = 0.002
Identities = 8/50 (16%), Positives = 13/50 (26%), Gaps = 1/50 (2%)
Query: 244 LEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
L A T + + + E V H + T+ P
Sbjct: 5 LSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERI-HGGGINTLDIEP 53
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A
{Saccharomyces cerevisiae}
Length = 369
Score = 110 bits (276), Expect = 1e-27
Identities = 40/251 (15%), Positives = 75/251 (29%), Gaps = 40/251 (15%)
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
+ H + GH + + + + D S S D + +W
Sbjct: 2 GSSHHHHHHSSGENLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYS 61
Query: 137 RSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAA 192
+ G + H I D G S +IKL+DV + G
Sbjct: 62 LNGERLGTLDGHTGTIWSI-DVDCFTKYCVTG--SADYSIKLWDVSN---G--------- 106
Query: 193 EKECDWTG------IKFSADGKYILISTNGSI-----IRTFDAYNGQCLQTLAGFLNNKG 241
+ W ++FS G Y L + + I ++ L
Sbjct: 107 QCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166
Query: 242 CPLE----------ASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQF 291
+ A ++ KY+I+G DG+I ++ ++ H + +QF
Sbjct: 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQF 226
Query: 292 NPKFNMMASAC 302
+P ++
Sbjct: 227 SPDLTYFITSS 237
Score = 104 bits (261), Expect = 1e-25
Identities = 40/282 (14%), Positives = 78/282 (27%), Gaps = 61/282 (21%)
Query: 24 ITSIDYSADGLLLISCSEDDQ-----IVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAA 78
+ +++S G ++ ++ I IY+ E + + TH A
Sbjct: 118 VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177
Query: 79 IH-----------ASTKIDDTVRYLSLHDNK-YIRYFPGHTKKVNSLCLSPIDDTFISGS 126
+ D + + +N Y+ H K ++ + SP FI+ S
Sbjct: 178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS 237
Query: 127 YDKTVRLWDLRSPNCQGIMHVSGSRPI--AAFDPEG--LIFGVGVNSDTIKLYDVRSFDK 182
D L D+ + P+ A P +I G G + +
Sbjct: 238 RDTNSFLVDVSTLQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKF 295
Query: 183 GPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGC 242
R + + + + G + G
Sbjct: 296 -----------------------------------EARFYHKIFEEEIGRVQG---HFGP 317
Query: 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPS 284
+ +P SG DG I + + EK + D + +
Sbjct: 318 LNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKYDVEKAA 359
Score = 98.1 bits (245), Expect = 3e-23
Identities = 47/322 (14%), Positives = 89/322 (27%), Gaps = 103/322 (31%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
T I SID ++ S D I ++D G T
Sbjct: 74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT---------------------- 111
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGS-----YDKTVRLWD 135
+ V + SP + F++ ++ +++
Sbjct: 112 ----------------------WKSPV-PVKRVEFSPCGNYFLAILDNVMKNPGSINIYE 148
Query: 136 LRSPNCQGIMHVSGSRPI--------------AAFDPEG--LIFGVGVNSD--TIKLYDV 177
+ + + PI A + +G +I G I YDV
Sbjct: 149 IERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG----HKDGKISKYDV 204
Query: 178 RSFDK--GPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234
+ + + + ++FS D Y + S+ + D Q L+
Sbjct: 205 SNNYEYVDSIDLHE-------KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE 257
Query: 235 GFLNNKGCPLE-ASFTPDSKYVISGS--------------TDGRIHIWNAEKGFKVCVLD 279
CPL A TP +++I G ++ ++ +
Sbjct: 258 T-----DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ 312
Query: 280 ADHPSPVQTIQFNPKFNMMASA 301
H P+ T+ +P+ AS
Sbjct: 313 -GHFGPLNTVAISPQGTSYASG 333
Score = 76.5 bits (189), Expect = 8e-16
Identities = 27/155 (17%), Positives = 49/155 (31%), Gaps = 17/155 (10%)
Query: 5 DNVIRSY------KVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT 58
D I Y + + I+ + +S D I+ S D + D +
Sbjct: 196 DGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKK 255
Query: 59 ----------VFS-KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHT 107
V + K + L AK ++ + R+ + I GH
Sbjct: 256 YETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF 315
Query: 108 KKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQ 142
+N++ +SP ++ SG D +RL
Sbjct: 316 GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD 350
Score = 73.4 bits (181), Expect = 8e-15
Identities = 33/195 (16%), Positives = 59/195 (30%), Gaps = 59/195 (30%)
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMHVSG-SRPIAAFDPEGLIFGVGVNSDTIKLYDVRS 179
+ + L+ S + G RP+
Sbjct: 4 SHHHHHHSSGENLYFQGSHMKAIKLT--GHERPL-------------------------- 35
Query: 180 FDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGF 236
T +K++ +G + S S + + NG+ L TL G
Sbjct: 36 -------------------TQVKYNKEGDLL-FS--CSKDSSASVWYSLNGERLGTLDG- 72
Query: 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFN 296
+ G +KY ++GS D I +W+ G V P PV+ ++F+P N
Sbjct: 73 --HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW--KSPVPVKRVEFSPCGN 128
Query: 297 MMASACTNLAFWIPT 311
+ N+ +
Sbjct: 129 YFLAILDNVMKNPGS 143
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
{Homo sapiens}
Length = 368
Score = 110 bits (276), Expect = 1e-27
Identities = 59/336 (17%), Positives = 113/336 (33%), Gaps = 61/336 (18%)
Query: 4 TDNVIRSYKVAKLFRENTDKITSIDYSAD---GLLLISCSEDDQIVIYDCELGTNKRTVF 60
TDN K ++ D I + +S G LI+ S + + ++ + + +T+
Sbjct: 23 TDNHNPM-KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQ--DSGQTIP 79
Query: 61 SKKYGVDLIRFTHAKQAAIHA------STKI-----DDTVRYLSLHDNKYIRYFPGHTKK 109
+ H + +K+ D T + L N+ I+ H
Sbjct: 80 KAQQM-------H--TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAP 129
Query: 110 VNSLC--LSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA--AFDPEGLIFGV 165
V ++ +P ++GS+DKT++ WD RS N ++ + R P + V
Sbjct: 130 VKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL-PERCYCADVIYPMAV---V 185
Query: 166 GVNSDTIKLYDVRSFD---KGPFSNFKFAAEKECDWTGIKFSADGK-----YILISTNGS 217
+ +Y + + + S K + D + + L S G
Sbjct: 186 ATAERGLIVYQLENQPSEFRRIESPLKHQH------RCVAIFKDKQNKPTGFALGSIEGR 239
Query: 218 I-IRTFDAYNG-QCLQTLAGFLNNKGCPLEA---------SFTPDSKYVISGSTDGRIHI 266
+ I + N + T +N +F P + + +DGR
Sbjct: 240 VAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF 299
Query: 267 WNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASAC 302
W+ + K+ + P+ FN N+ A A
Sbjct: 300 WDKDARTKLKTSEQ-LDQPISACCFNHNGNIFAYAS 334
Score = 80.0 bits (198), Expect = 5e-17
Identities = 50/318 (15%), Positives = 94/318 (29%), Gaps = 73/318 (22%)
Query: 25 TSIDYSADGL-LLISCSEDDQIVIYDCELGTN-KRTVFSKKYGVDLIRFTHAKQAAIH-A 81
T+ + G + S + D+ + D E+ ++ ++ + F+
Sbjct: 6 TTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGC-------LSFSPPTLPGNFLI 58
Query: 82 STKIDDTVRYLSLHD-----NKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWD 135
+ + VR + + HT V +C S D + + + S DKT ++WD
Sbjct: 59 AGSWANDVR---CWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKMWD 114
Query: 136 LRSPNCQGI-MHVSGSRPIA-AFDPEG--LIFGVGVNSD--TIKLYDVRSFDKGPFSNFK 189
L S I H + + I P ++ G S T+K +D RS
Sbjct: 115 LSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG----SWDKTLKFWDTRS---------- 160
Query: 190 FAAEKECDWT------GIKFSADGKYILISTNGSIIRTFDAYN--GQCLQTLAGFLNNKG 241
+++T + + N + + + K
Sbjct: 161 ----SNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPL---KH 213
Query: 242 CPLEASFTPDSKYVI----SGSTDGRIHIWNAEKG--------FK------VCVLDADHP 283
+ D + GS +GR+ I FK
Sbjct: 214 QHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDI 273
Query: 284 SPVQTIQFNPKFNMMASA 301
V I F+P +A+
Sbjct: 274 YAVNGIAFHPVHGTLATV 291
Score = 71.5 bits (176), Expect = 3e-14
Identities = 22/174 (12%), Positives = 48/174 (27%), Gaps = 18/174 (10%)
Query: 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFT--HAKQAAI 79
++ D ++ + + + + +R K+ + +
Sbjct: 171 ERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTG 230
Query: 80 HASTKIDDTVR--YLSLHDNKYIRY-FPGHTKK------------VNSLCLSPIDDTFIS 124
A I+ V Y++ + + F H VN + P+ T +
Sbjct: 231 FALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLAT 290
Query: 125 GSYDKTVRLWDLRSPNCQGIMH-VSGSRPIAAFDPEGLIFGVGVNSDTIKLYDV 177
D WD + + F+ G IF + D K ++
Sbjct: 291 VGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF 344
Score = 69.6 bits (171), Expect = 1e-13
Identities = 34/284 (11%), Positives = 74/284 (26%), Gaps = 55/284 (19%)
Query: 5 DNVIRSYKVA----KLFRENTDKITSIDY--SADGLLLISCSEDDQIVIYDCELGTNKRT 58
D + + ++ ++ + +I + + + +++ S D + +D
Sbjct: 107 DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV 166
Query: 59 VF--SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLS 116
+ + Y D+I A+ A+ + V L +++ R + + +
Sbjct: 167 LQLPERCYCADVIY-----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIF 221
Query: 117 P----IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTI 172
F GS + V + + PN + F + S
Sbjct: 222 KDKQNKPTGFALGSIEGRVAIHYINPPNPA--------KDNFTF--KCHRSNGTNTSAPQ 271
Query: 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS--IIRTFDAYNGQCL 230
+Y V I F + +T GS +D L
Sbjct: 272 DIYAVNG---------------------IAFHPVHGTL--ATVGSDGRFSFWDKDARTKL 308
Query: 231 QTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK 274
+T F + S+ K
Sbjct: 309 KTSEQLDQPISA---CCFNHNGNIFAYASSYDWSKGHEFYNPQK 349
Score = 45.7 bits (109), Expect = 9e-06
Identities = 14/150 (9%), Positives = 42/150 (28%), Gaps = 17/150 (11%)
Query: 15 KLFRENTDKITSIDYSADG----LLLISCSEDDQIVIYDCELGTNKRTVFSKK------Y 64
++ + + D S + ++ I+ + F+ K
Sbjct: 206 RIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGT 265
Query: 65 GVDLIRFTHAKQA-AIH------ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP 117
+ +A A H A+ D + ++ + +++ C +
Sbjct: 266 NTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNH 325
Query: 118 IDDTFISGSYDKTVRLWDLRSPNCQGIMHV 147
+ F S + + +P + + +
Sbjct: 326 NGNIFAYASSYDWSKGHEFYNPQKKNYIFL 355
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40
repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Length = 425
Score = 110 bits (278), Expect = 1e-27
Identities = 36/291 (12%), Positives = 77/291 (26%), Gaps = 74/291 (25%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFT----HAKQ 76
I S+ ++ DG +IS ++ ++++ GT + K+ G I
Sbjct: 149 RAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSL 208
Query: 77 AA--------IHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSY 127
+ + + GH ++ L + + + S S
Sbjct: 209 GVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASD 267
Query: 128 DKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPF 185
D T+R+W + N Q H + S
Sbjct: 268 DGTLRIWHGGNGNSQNCFYGHSQS-----------------IVS---------------- 294
Query: 186 SNFKFAAEKECDWTGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNNKGC 242
+ D K +IS S+ +R + L +
Sbjct: 295 ---------------ASWVGDDK--VIS--CSMDGSVRLWSLKQNTLLALSIV---DGVP 332
Query: 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
+ D + DG++++++ +K + + P
Sbjct: 333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIP 383
Score = 100 bits (252), Expect = 4e-24
Identities = 42/296 (14%), Positives = 81/296 (27%), Gaps = 64/296 (21%)
Query: 21 TDKITSIDYS-ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAI 79
D I S ++ D +L ++ + + + K + +R A A+
Sbjct: 45 LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS 104
Query: 80 HASTKI------------------DDTVRYLSL--HDNKYIRYFPGHTKKVNSLCLSPID 119
+T + +R L + H + S+ +
Sbjct: 105 GKTTNQVTCLAWSHDGNSIVTGVENGELR---LWNKTGALLNVLNFHRAPIVSVKWNKDG 161
Query: 120 DTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDV 177
IS + LW++ S +G I A + D DV
Sbjct: 162 THIISMDVENVTILWNVISGTVMQHFELKETGGSSINA---------ENHSGDGSLGVDV 212
Query: 178 RSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFL 237
++ D K+++ G+ I + L G
Sbjct: 213 ------------------------EWVDDDKFVIPGPKGA-IFVYQITEKTPTGKLIG-- 245
Query: 238 NNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
+ G F +K ++S S DG + IW+ G H + + +
Sbjct: 246 -HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG-HSQSIVSASWVG 299
Score = 83.5 bits (207), Expect = 4e-18
Identities = 44/275 (16%), Positives = 78/275 (28%), Gaps = 55/275 (20%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
+ +++ D + I +Y T + + ++ F +
Sbjct: 202 HSGDGSLGVDVEWVDDDKF-VIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK 260
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
+ AS D T+R + F GH++ + S DD IS S D +VRLW L
Sbjct: 261 LLLSASD--DGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG-DDKVISCSMDGSVRLWSL 317
Query: 137 RSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC 196
+ + V G + +
Sbjct: 318 KQNTLLALSIVDGV---------------PIFA--------------------------- 335
Query: 197 DWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL-QTLAGFLNNKGCPLEASFTPDSKYV 255
+ S DG+ ++ + +D ++L G N G + Y
Sbjct: 336 ----GRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYG--NRDGILNPLPIPLYASYQ 389
Query: 256 ISGSTDGRIHI-WNAEKGFKVCVLDADHPSPVQTI 289
S D + WN K+ V + V I
Sbjct: 390 SSQDNDYIFDLSWNCAGN-KISVAYSLQEGSVVAI 423
Score = 82.3 bits (204), Expect = 1e-17
Identities = 35/281 (12%), Positives = 72/281 (25%), Gaps = 90/281 (32%)
Query: 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAA 78
E+ + D I S+D
Sbjct: 8 EDGASTVERETQEDDTNSIDSSDDL----------------------------------- 32
Query: 79 IHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLR 137
D V+ L + S +P+D++ + G + RL +
Sbjct: 33 -------DGFVKILKEI---------VKLDNIVSSTWNPLDESILAYGEKNSVARLARIV 76
Query: 138 SPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECD 197
+ +G + + P L G ++ V
Sbjct: 77 ETDQEGKKYWKLTIIAELRHPFALSASSGKTTN-----QVTC------------------ 113
Query: 198 WTGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKY 254
+ +S DG I ++ G +R ++ G L L ++ + + D +
Sbjct: 114 ---LAWSHDGNSI-VT--GVENGELRLWNK-TGALLNVLNF---HRAPIVSVKWNKDGTH 163
Query: 255 VISGSTDGRIHIWNAEKGFKVCVLD--ADHPSPVQTIQFNP 293
+IS + +WN G + + S + +
Sbjct: 164 IISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSG 204
Score = 78.1 bits (193), Expect = 3e-16
Identities = 34/242 (14%), Positives = 69/242 (28%), Gaps = 61/242 (25%)
Query: 4 TDNVIRSYKVA-----KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT 58
I Y++ + I+ ++++ LL+S S+D + I+ G ++
Sbjct: 225 PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC 284
Query: 59 VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPI 118
F GH++ + S
Sbjct: 285 --------------------------------------------FYGHSQSIVSASWVG- 299
Query: 119 DDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPI--AAFDPEGLIFGVGVNSDTIKL 174
DD IS S D +VRLW L+ + PI +G + V + +
Sbjct: 300 DDKVISCSMDGSVRLWSLKQNTLLALSIVD---GVPIFAGRISQDGQKYAVAFMDGQVNV 356
Query: 175 YDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIR-TFDAYNGQCLQTL 233
YD++ + ++ + Y N I +++ +
Sbjct: 357 YDLKK---LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAY 413
Query: 234 AG 235
+
Sbjct: 414 SL 415
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double
phosphorylation, transcription-C complex; HET: TPO;
2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB:
2ovp_B* 2ovq_B*
Length = 445
Score = 110 bits (278), Expect = 2e-27
Identities = 67/311 (21%), Positives = 125/311 (40%), Gaps = 68/311 (21%)
Query: 10 SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT-------VFSK 62
K K+ + + D + + G ++S S+D+ + ++ G RT V+S
Sbjct: 107 ELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS 165
Query: 63 KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTF 122
+ ++I S D T++ + + I GHT V + L
Sbjct: 166 QMRDNII-----------ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRV 212
Query: 123 ISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSD--TIKLYDVR 178
+SGS D T+R+WD+ + C ++ HV+ R + +D ++ G + +K++D
Sbjct: 213 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV-QYDGRRVVSG----AYDFMVKVWDPE 267
Query: 179 SFDKGPFSNFKFAAEKEC--------DW-TGIKFSADGKYILISTNGSI---IRTFDAYN 226
+ + C + ++F DG ++ +S GS+ IR +D
Sbjct: 268 T--------------ETCLHTLQGHTNRVYSLQF--DGIHV-VS--GSLDTSIRVWDVET 308
Query: 227 GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD--ADHPS 284
G C+ TL G + + ++SG+ D + IW+ + G + L H S
Sbjct: 309 GNCIHTLTGHQSLTSG---MELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS 363
Query: 285 PVQTIQFNPKF 295
V +QFN F
Sbjct: 364 AVTCLQFNKNF 374
Score = 103 bits (260), Expect = 4e-25
Identities = 64/322 (19%), Positives = 122/322 (37%), Gaps = 59/322 (18%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
DN ++ + K + +T + S + ++IS S D + +++ E G T+
Sbjct: 138 DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTL 195
Query: 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID 119
+ V + H K+ S D T+R + + + GH V +
Sbjct: 196 YGHTSTVRCMHL-HEKRVV---SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--G 249
Query: 120 DTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSD--TIKLY 175
+SG+YD V++WD + C + H + + FD ++ G S +I+++
Sbjct: 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL-QFDGIHVVSG----SLDTSIRVW 304
Query: 176 DVRSFDKGPFSNFKFAAEKEC--------DWTG-IKFSADGKYILISTNGS---IIRTFD 223
DV + C T ++ + IL+S G+ ++ +D
Sbjct: 305 DVET--------------GNCIHTLTGHQSLTSGMELKDN---ILVS--GNADSTVKIWD 345
Query: 224 AYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD-- 281
GQCLQTL G ++ + +VI+ S DG + +W+ + G + L
Sbjct: 346 IKTGQCLQTLQGPNKHQSAVT--CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 403
Query: 282 --HPSPVQTIQFNPKFNMMASA 301
V I+ + + A
Sbjct: 404 GGSGGVVWRIRASNTKLVCAVG 425
Score = 92.7 bits (231), Expect = 3e-21
Identities = 53/273 (19%), Positives = 95/273 (34%), Gaps = 53/273 (19%)
Query: 40 SEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY 99
+ED+ + C+ + K+ V F H+ + A + + K
Sbjct: 53 AEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKS--AYIRQHRIDTNWRRGELKS 110
Query: 100 IRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFD 157
+ GH V + CL + +SGS D T+++W + C + H G
Sbjct: 111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS-QMR 168
Query: 158 PEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKEC--------DW-TGIKFSAD 206
+I G S T+K+++ + EC +
Sbjct: 169 DNIIISG----STDRTLKVWNAETG--------------ECIHTLYGHTSTVRCMHLHEK 210
Query: 207 GKYILISTNGSI---IRTFDAYNGQCLQTLAGFLN--NKGCPLEASFTPDSKYVISGSTD 261
++S GS +R +D GQCL L G + D + V+SG+ D
Sbjct: 211 ---RVVS--GSRDATLRVWDIETGQCLHVLMGHVAAVR-------CVQYDGRRVVSGAYD 258
Query: 262 GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPK 294
+ +W+ E + L H + V ++QF+
Sbjct: 259 FMVKVWDPETETCLHTLQ-GHTNRVYSLQFDGI 290
Score = 81.6 bits (202), Expect = 2e-17
Identities = 42/263 (15%), Positives = 87/263 (33%), Gaps = 73/263 (27%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ + Y DG ++S + D + ++D E T T+ V ++F
Sbjct: 239 VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVV--- 293
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
S +D ++R + I GH + + L + +SG+ D TV++WD+++
Sbjct: 294 -SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQ 350
Query: 141 CQGIM-----HVSGSRPIAAFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAE 193
C + H S + F+ +I SD T+KL+D+++
Sbjct: 351 CLQTLQGPNKHQSAVTCLQ-FNKNFVITS----SDDGTVKLWDLKT-------------- 391
Query: 194 KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNN--KGCPLEASFTPD 251
G+ ++ L + G +
Sbjct: 392 ---------------------------------GEFIRNLVTLESGGSGGVVWRIRASNT 418
Query: 252 SKYVISGSTDG----RIHIWNAE 270
GS +G ++ + + +
Sbjct: 419 KLVCAVGSRNGTEETKLLVLDFD 441
Score = 81.6 bits (202), Expect = 2e-17
Identities = 37/228 (16%), Positives = 73/228 (32%), Gaps = 39/228 (17%)
Query: 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM 145
D+ + + +KV + W ++
Sbjct: 55 DNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVL 114
Query: 146 HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC--------D 197
I G G + +T+K++ + +C
Sbjct: 115 KGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVT--------------GKCLRTLVGHTG 160
Query: 198 W-TGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK 253
+ + I+IS GS ++ ++A G+C+ TL G + C K
Sbjct: 161 GVWSSQMRDN---IIIS--GSTDRTLKVWNAETGECIHTLYGHTSTVRC---MHLHE--K 210
Query: 254 YVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
V+SGS D + +W+ E G + VL H + V+ +Q++ + + S
Sbjct: 211 RVVSGSRDATLRVWDIETGQCLHVLMG-HVAAVRCVQYDGR--RVVSG 255
Score = 67.3 bits (165), Expect = 1e-12
Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 21/174 (12%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
+ +T+++ S+ + DG+ ++S S D I ++D E G T+ + +
Sbjct: 275 LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI- 331
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPG---HTKKVNSLCLSPIDDTFISGSYDKTVRL 133
+ S D TV+ + + ++ G H V L + + I+ S D TV+L
Sbjct: 332 --L-VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKL 386
Query: 134 WDLRSPNCQGIMHVSGSR----PI--AAFDPEGLIFGVGVNSDT----IKLYDV 177
WDL++ + S + L+ VG + T + + D
Sbjct: 387 WDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 440
Score = 66.5 bits (163), Expect = 2e-12
Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 7/111 (6%)
Query: 193 EKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDS 252
K F I + + + L G + +
Sbjct: 74 IKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDD----HVITCLQFCG 129
Query: 253 KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT 303
++SGS D + +W+A G + L H V + Q N++ S T
Sbjct: 130 NRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMRD--NIIISGST 177
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B*
4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Length = 383
Score = 108 bits (272), Expect = 5e-27
Identities = 45/323 (13%), Positives = 107/323 (33%), Gaps = 41/323 (12%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLI-SCSEDDQIVIYDCELGTNKRTVFSK--KY 64
++SYK+ + ++TS+++ + S+ I+++D ++ +
Sbjct: 60 LKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGD 119
Query: 65 GVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKY--IRYFPGHTKKVNSLCLSPIDDTF 122
+ ++F + + I + + +S
Sbjct: 120 AITGMKFNQFNTNQL-FVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQML 178
Query: 123 ISGSYDKTVRLWDLRSPNCQG-------IMHVSGSRPIAAFDPEG-LIFGVGVNSDTIKL 174
+G + L L + H F+P + T+KL
Sbjct: 179 ATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHA-------EFNPRCDWLMATSSVDATVKL 231
Query: 175 YDVRSFDKGPFSNFKFAAEKE-CDW-TGIKFS-ADGKYILISTNGSIIRTFDAYNGQCLQ 231
+D+R+ + AE F+ D +L + + IR + +Y+
Sbjct: 232 WDLRNIKDKN----SYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD 287
Query: 232 TLAGFLNNKGC---PLEASFTPDSKYVISG---------STDGRIHIWNAEKGFKVCVL- 278
+ + + P++A++ P +++G + I I++A G V L
Sbjct: 288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLR 347
Query: 279 DADHPSPVQTIQFNPKFNMMASA 301
D + + +F+P +++AS
Sbjct: 348 DPNAAGIISLNKFSPTGDVLASG 370
Score = 107 bits (268), Expect = 2e-26
Identities = 47/288 (16%), Positives = 81/288 (28%), Gaps = 69/288 (23%)
Query: 2 KLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS 61
L D +V +D S +L + ++++
Sbjct: 144 TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL----------- 192
Query: 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT 121
D I H KV +P
Sbjct: 193 ----------------------------------DGHEIFKEKLHKAKVTHAEFNP-RCD 217
Query: 122 FI--SGSYDKTVRLWDLRSPNCQG-IMHVSG-SRPI--AAFDPE-GLIFGVGVNSDTIKL 174
++ + S D TV+LWDLR+ + + +P+ A F+P + I++
Sbjct: 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRV 277
Query: 175 YDVRSFDK------------GPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTF 222
Y + K + K D D + + ++ + I +
Sbjct: 278 YSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLL-LNDKRT-IDIY 335
Query: 223 DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAE 270
DA +G + L N G F+P + SG I IWN E
Sbjct: 336 DANSGGLVHQLRDP-NAAGIISLNKFSPTGDVLASGM-GFNILIWNRE 381
Score = 102 bits (255), Expect = 1e-24
Identities = 40/250 (16%), Positives = 68/250 (27%), Gaps = 24/250 (9%)
Query: 66 VDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-S 124
+ I + Q+ + SL K R ++V SL P T +
Sbjct: 32 LHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAV 91
Query: 125 GSYDKTVRLWDLRSPNCQGIMHVSG-SRPIA--AFDPEG---LIFGVGVNSD--TIKLYD 176
GS + LWD N + G I F+ L S L D
Sbjct: 92 GSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS----SIRGATTLRD 147
Query: 177 VRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236
F + + + S + + + + +G +
Sbjct: 148 F---SGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLH 203
Query: 237 LNNKGCPLEASFTPDSKYVI-SGSTDGRIHIWNAEKGFKVCVLDA--DHPSPVQTIQFNP 293
A F P +++ + S D + +W+ A H PV FNP
Sbjct: 204 KAKVTH---AEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 260
Query: 294 KF-NMMASAC 302
+ +
Sbjct: 261 TDSTKLLTTD 270
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 401
Score = 107 bits (270), Expect = 1e-26
Identities = 57/311 (18%), Positives = 102/311 (32%), Gaps = 72/311 (23%)
Query: 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV------ 66
A + + + S+ +S DG L + + IYD E T RT+ + V
Sbjct: 126 SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN 185
Query: 67 -DLIRFTHAKQAAIHASTKIDDTVRYLSLHD----NKYIRYFPGHTKKVNSLCLSPIDDT 121
++ +S + HD N I GH+ +V L D
Sbjct: 186 RHVL-----------SSGSRSGAIH---HHDVRIANHQIGTLQGHSSEVCGLAWRS-DGL 230
Query: 122 FI-SGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG---LIFGVGVNSDTIKLY 175
+ SG D V++WD RS + H + + + A+ P L G G I +
Sbjct: 231 QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAV-AWCPWQSNLLATGGGTMDKQIHFW 289
Query: 176 DV------RSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSI---IRTFDAYN 226
+ + D G T + +S K I +ST+G + + +
Sbjct: 290 NAATGARVNTVDAG------------SQVTSLIWSPHSKEI-MSTHGFPDNNLSIWSYSS 336
Query: 227 GQCLQTLAGFLNNKGCPLEA--------SFTPDSKYVISGSTDGRIHIWNAEKGFKVCVL 278
+ + A + +PD + + + ++D + W G V
Sbjct: 337 SGLTKQ---------VDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387
Query: 279 DADHPSPVQTI 289
+P +I
Sbjct: 388 IPITKTPSSSI 398
Score = 91.5 bits (228), Expect = 6e-21
Identities = 43/228 (18%), Positives = 78/228 (34%), Gaps = 30/228 (13%)
Query: 86 DDTVRYLSLHDNKYIR-YFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNCQG 143
+ V + + V S+ S D +F+ G + V ++D+ S
Sbjct: 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKLR 170
Query: 144 IMHVSGSRPIA-AFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKECDW-T 199
M +R +++ L G S I +DVR
Sbjct: 171 TMAGHQARVGCLSWNRHVLSSG----SRSGAIHHHDVRI---ANHQIGTLQGHS--SEVC 221
Query: 200 GIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI 256
G+ + +DG L S G +++ +DA + T + ++ P ++
Sbjct: 222 GLAWRSDGLQ-LAS--GGNDNVVQIWDARSSIPKFTKTN---HNAAVKAVAWCPWQSNLL 275
Query: 257 ---SGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
G+ D +IH WNA G V D S V ++ ++P + S
Sbjct: 276 ATGGGTMDKQIHFWNAATG--ARVNTVDAGSQVTSLIWSPHSKEIMST 321
Score = 81.1 bits (201), Expect = 3e-17
Identities = 29/200 (14%), Positives = 60/200 (30%), Gaps = 52/200 (26%)
Query: 104 PGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIF 163
PG L + ++ + ++ V +W+ S + + S +
Sbjct: 88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYV---------- 137
Query: 164 GVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFD 223
+K+S DG ++ + ++ +D
Sbjct: 138 -----------------------------------ASVKWSHDGSFLSVGLGNGLVDIYD 162
Query: 224 AYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG-FKVCVLDADH 282
+ L+T+AG G + + + SGS G IH + ++ L H
Sbjct: 163 VESQTKLRTMAGHQARVG-----CLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQG-H 216
Query: 283 PSPVQTIQFNPKFNMMASAC 302
S V + + +AS
Sbjct: 217 SSEVCGLAWRSDGLQLASGG 236
Score = 58.0 bits (141), Expect = 1e-09
Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 35/161 (21%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADG---LLLISCSEDDQIVIYDCELGTNK 56
DNV++ S + + ++ + L + D QI ++ G
Sbjct: 238 DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV 297
Query: 57 RTV----------FSKKYGVDLIRFTHAKQAAIHASTKIDDTVR---YLSLHDNKYIRYF 103
TV +S I + H D+ + Y S K
Sbjct: 298 NTVDAGSQVTSLIWSPHS--KEI-------MSTHGFP--DNNLSIWSYSSSGLTK-QVDI 345
Query: 104 PGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNCQG 143
P H +V LSP D + + + D+ ++ W + +
Sbjct: 346 PAHDTRVLYSALSP-DGRILSTAASDENLKFWRVYDGDHVK 385
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS
domain, DEP domain, DHEX domain, GGL domain, propeller,
signaling protein; 1.95A {Mus musculus}
Length = 354
Score = 105 bits (265), Expect = 3e-26
Identities = 50/286 (17%), Positives = 94/286 (32%), Gaps = 40/286 (13%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ T ++ L E+++ ++D EL
Sbjct: 8 HENETLASLKSEAESLKGKLEEERAKLHDVELH--------------------------- 40
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
++ + V L K R GH KV + +S S D V +WD + N
Sbjct: 41 ---QVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN 97
Query: 141 CQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDW 198
+ + + A+ P G G + +Y + + K + ++
Sbjct: 98 KEHAVTMPCTWVMAC-AYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNY 156
Query: 199 -TGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDS--KYV 255
+ F+ IL ++ +D +GQ LQ+ G + L P
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG---HGADVLCLDLAPSETGNTF 213
Query: 256 ISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
+SG D + +W+ G V + H S V ++++ P + AS
Sbjct: 214 VSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGDAFASG 258
Score = 105 bits (264), Expect = 5e-26
Identities = 55/281 (19%), Positives = 92/281 (32%), Gaps = 72/281 (25%)
Query: 5 DNVIRSYKVAKLFREN-----------TDKITSIDYSADGLLLISCSEDDQIVIYDCELG 53
DN Y + EN T+ +++ ++ + +++ S D ++D E G
Sbjct: 127 DNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG 186
Query: 54 TNKRT-------VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGH 106
++ V + ++ S D + + ++ F H
Sbjct: 187 QLLQSFHGHGADVLC-------LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH 239
Query: 107 TKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVG 166
VNS+ P D F SGS D T RL+DLR+ R +A + E +IFG
Sbjct: 240 ESDVNSVRYYPSGDAFASGSDDATCRLYDLRA-----------DREVAIYSKESIIFGA- 287
Query: 167 VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYN 226
+ + FS G+ + N I +D
Sbjct: 288 --------------------------------SSVDFSLSGRLLFAGYNDYTINVWDVLK 315
Query: 227 GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIW 267
G + L G N +PD SGS D + +W
Sbjct: 316 GSRVSILFGHENRVST---LRVSPDGTAFCSGSWDHTLRVW 353
Score = 68.3 bits (168), Expect = 4e-13
Identities = 20/207 (9%), Positives = 51/207 (24%), Gaps = 50/207 (24%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG 164
G + L ++ ++ +L D+ + F +
Sbjct: 6 GLHENETLASLKSEAESLKGKLEEERAKLHDVELHQV-----AERVEALGQFVMKTR--- 57
Query: 165 VGVNSDTIK--LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSI---I 219
T+K V + + D + I +S S +
Sbjct: 58 -----RTLKGHGNKVLC---------------------MDWCKDKRRI-VS--SSQDGKV 88
Query: 220 RTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD 279
+D++ + + ++ P + G D + ++ +
Sbjct: 89 IVWDSFTTNKEHAVTM---PCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAA 145
Query: 280 -----ADHPSPVQTIQFNPKFNMMASA 301
A H + + F + +A
Sbjct: 146 KKKSVAMHTNYLSACSFTNSDMQILTA 172
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor,
WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB:
2zkq_a
Length = 340
Score = 104 bits (262), Expect = 8e-26
Identities = 53/267 (19%), Positives = 92/267 (34%), Gaps = 63/267 (23%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK--KYGVDLIRFTHA 74
F +T + S+ +S+D ++S S D I +++ LG K TV + V +RF+
Sbjct: 124 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPN 182
Query: 75 KQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRL 133
I S D V+ +L + K GHT +N++ +SP D + SG D L
Sbjct: 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAML 241
Query: 134 WDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE 193
WDL + +N+
Sbjct: 242 WDLNEGKHLYTLDGGDI----------------INA------------------------ 261
Query: 194 KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA------- 246
+ FS + Y L + G I+ +D + L +A
Sbjct: 262 -------LCFSPNR-YWLCAATGPSIKIWDLEGKIIVDELKQ--EVISTSSKAEPPQCTS 311
Query: 247 -SFTPDSKYVISGSTDGRIHIWNAEKG 272
+++ D + + +G TD + +W G
Sbjct: 312 LAWSADGQTLFAGYTDNLVRVWQVTIG 338
Score = 100 bits (252), Expect = 2e-24
Identities = 60/290 (20%), Positives = 107/290 (36%), Gaps = 38/290 (13%)
Query: 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG----VDLIRFTHAKQAAIHASTKIDD 87
S + +Y + T + T+ G V I T I S D
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMI-LSASRDK 61
Query: 88 TVR-----YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNC 141
T+ + R GH+ V+ + +S D F SGS+D T+RLWDL +
Sbjct: 62 TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTGTT 120
Query: 142 QGIM--HVSGSRPIAAFDPEG--LIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKE 195
H + AF + ++ G S TIKL++ K + E
Sbjct: 121 TRRFVGHTKDVLSV-AFSSDNRQIVSG----SRDKTIKLWNTLGVCK-----YTVQDESH 170
Query: 196 CDW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251
+W + ++FS + +I + +++ ++ N + G + G + +PD
Sbjct: 171 SEWVSCVRFSPNSSNPIIVS-CGWDKLVKVWNLANCKLKTNHIG---HTGYLNTVTVSPD 226
Query: 252 SKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
SG DG+ +W+ +G + L D + + F+P + +A
Sbjct: 227 GSLCASGGKDGQAMLWDLNEGKHLYTL--DGGDIINALCFSPNRYWLCAA 274
Score = 67.1 bits (165), Expect = 9e-13
Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 30/154 (19%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT- 58
D +++ + K+ +T + ++ S DG L S +D Q +++D G + T
Sbjct: 194 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 253
Query: 59 -----VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVR---------YLSLHDNKYIRYFP 104
+ + + F+ + A+ +++ L
Sbjct: 254 DGGDIINA-------LCFSPNRYWLCAAT---GPSIKIWDLEGKIIVDELKQEVISTSSK 303
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS 138
+ SL S T +G D VR+W +
Sbjct: 304 AEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337
Score = 37.1 bits (87), Expect = 0.006
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 250 PDSKYVISGSTDGRIHIWNAEKGFKVCVLDA---DHPSPVQTIQFNPKF-NMMASA 301
+ SG G +++ + L H V I P+F +M+ SA
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSA 57
Score = 32.1 bits (74), Expect = 0.23
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGT 54
+ TS+ +SADG L + D+ + ++ +GT
Sbjct: 306 PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional
CO-repressor, WD40, transcription repressor, WD repeat;
1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Length = 337
Score = 104 bits (261), Expect = 9e-26
Identities = 48/273 (17%), Positives = 84/273 (30%), Gaps = 66/273 (24%)
Query: 2 KLTDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS 61
+ D + ++ + ++ S D + SC D I ++D T R
Sbjct: 122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ--- 178
Query: 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT 121
F GHT + + +S D T
Sbjct: 179 -----------------------------------------FQGHTDGASCIDISN-DGT 196
Query: 122 FI-SGSYDKTVRLWDLRSPNCQGIM-HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS 179
+ +G D TVR WDLR S + + P G VG+ S +++ V
Sbjct: 197 KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSL-GYCPTGEWLAVGMESSNVEVLHVNK 255
Query: 180 FDKGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAG 235
DK + +KF+ GK+ +S + + G +
Sbjct: 256 PDKYQLHLHE-------SCVLSLKFAYCGKWF-VS--TGKDNLLNAWRTPYGASIFQ--- 302
Query: 236 FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
L + D KY+++GS D + ++
Sbjct: 303 -SKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
Score = 95.3 bits (238), Expect = 2e-22
Identities = 39/286 (13%), Positives = 76/286 (26%), Gaps = 74/286 (25%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY-----GVDLIRFTHAK 75
+ + ++ S + + + ++D NK V + +
Sbjct: 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 76 QAAIHASTKIDDTVR--YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVR 132
I T+ L+ + +L +SP D S D +
Sbjct: 110 CTLIVGGE--ASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIA 166
Query: 133 LWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKF 190
+WDL + H G +
Sbjct: 167 VWDLHNQTLVRQFQGHTD-----------------GASC--------------------- 188
Query: 191 AAEKECDWTGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247
I S DG + + G + +R++D G+ LQ F
Sbjct: 189 ----------IDISNDGTKL-WT--GGLDNTVRSWDLREGRQLQQH-DF---TSQIFSLG 231
Query: 248 FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
+ P +++ G + + + K K L H S V +++F
Sbjct: 232 YCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH-LHESCVLSLKFAY 275
Score = 94.9 bits (237), Expect = 2e-22
Identities = 40/290 (13%), Positives = 78/290 (26%), Gaps = 65/290 (22%)
Query: 21 TDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAI 79
+ S +ADG + + D I T + V + ++ +
Sbjct: 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISNPTRHVY 67
Query: 80 HASTKIDDTVRYLSLHDNKYIR-----YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLW 134
V+ + + S L P T I G T+ +W
Sbjct: 68 TGG---KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124
Query: 135 DLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEK 194
DL +P + ++ S P +
Sbjct: 125 DLAAPTPRIKAELTSSAP-------------ACYA------------------------- 146
Query: 195 ECDWTGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251
+ S D K S I +D +N ++ G + C + D
Sbjct: 147 ------LAISPDSKVC-FS--CCSDGNIAVWDLHNQTLVRQFQGHTDGASC---IDISND 194
Query: 252 SKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
+ +G D + W+ +G ++ D S + ++ + P +A
Sbjct: 195 GTKLWTGGLDNTVRSWDLREGRQLQQH--DFTSQIFSLGYCPTGEWLAVG 242
Score = 91.0 bits (227), Expect = 5e-21
Identities = 27/194 (13%), Positives = 53/194 (27%), Gaps = 12/194 (6%)
Query: 105 GHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIF 163
+K S ++ D + R ++
Sbjct: 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHV 66
Query: 164 GVGVNSDTIKLYDVRS-FDKGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSIIRT 221
+K++D+ +K P S ++ K DG +++ S +
Sbjct: 67 -YTGGKGCVKVWDISHPGNKSPVSQLDC--LNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123
Query: 222 FDAYN--GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD 279
+D + L + + +PDSK S +DG I +W+ V
Sbjct: 124 WDLAAPTPRIKAELTS---SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ 180
Query: 280 ADHPSPVQTIQFNP 293
H I +
Sbjct: 181 -GHTDGASCIDISN 193
Score = 64.1 bits (157), Expect = 1e-11
Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 16/122 (13%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTN------KRTVFSKKYGVDLIRFTHA 74
T +I S+ Y G L E + + + V S ++F +
Sbjct: 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS-------LKFAYC 276
Query: 75 KQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLW 134
+ ST D+ + I + V S +S D ++GS DK ++
Sbjct: 277 GKWF--VSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333
Query: 135 DL 136
++
Sbjct: 334 EV 335
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone,
RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Length = 420
Score = 105 bits (264), Expect = 1e-25
Identities = 38/300 (12%), Positives = 77/300 (25%), Gaps = 82/300 (27%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
D + G L D +++ + + + + + I
Sbjct: 56 VDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM-LKRADYTAVDTAKLQMRRFIL 114
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSP 139
+T + ++ L + N H ++ L P + S S D +++W ++
Sbjct: 115 GTT--EGDIKVLDSNFNLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDG 171
Query: 140 NCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECD 197
+ + H + V
Sbjct: 172 SNPRTLIGHRA-----------------TVTD---------------------------- 186
Query: 198 WTGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNNKGC------------ 242
I G+ + +S S+ IR ++ G + T N
Sbjct: 187 ---IAIIDRGRNV-LS--ASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR 240
Query: 243 -PLEAS--------FTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
E S F KYVI+G G I + N + L + ++ +
Sbjct: 241 QLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDG 300
Score = 95.0 bits (237), Expect = 5e-22
Identities = 37/294 (12%), Positives = 81/294 (27%), Gaps = 83/294 (28%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
T IT D ++ ++++ Y
Sbjct: 5 TKTITVAHIQYDFKAVLEENDENDDEFY-------------------------------- 32
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSL---CLSPIDDTFISGSYDKTVRLWDLR 137
+D + + H G+++ V++ + D L++
Sbjct: 33 --INVDKNLNEIKEHKIV----VLGNSRGVDAGKGNTFEKVGSHLYKARLDGHDFLFNTI 86
Query: 138 SPNCQGIMHVSGSRPIAAFDPEG--LIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAE 193
+ ++ + + + I G + IK+ D
Sbjct: 87 IRDGSKMLKRADYTAVDTAKLQMRRFILG----TTEGDIKVLDSNFN------------- 129
Query: 194 KEC--------DW-TGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNNKG 241
T +KF G+ + IS S ++ + +G +TL G ++
Sbjct: 130 -LQREIDQAHVSEITKLKFFPSGEAL-IS--SSQDMQLKIWSVKDGSNPRTLIG---HRA 182
Query: 242 CPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD--ADHPSPVQTIQFNP 293
+ + + V+S S DG I +W G + + + V +I
Sbjct: 183 TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFV 236
Score = 84.2 bits (209), Expect = 3e-18
Identities = 35/288 (12%), Positives = 70/288 (24%), Gaps = 81/288 (28%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+T I G ++S S D I +++C GT T +
Sbjct: 181 RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT--------------------FN 220
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSP 139
D V ++L + T K N+L ++ +G + + ++ S
Sbjct: 221 RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSK 279
Query: 140 NCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWT 199
+ P F NS
Sbjct: 280 EQTIQL------------PSK--FTCSCNS------------------------------ 295
Query: 200 GIKFSA-DGKYILISTNGS---IIRTFDAYNGQCL--QTLAGFLNNKGCPLEASFTPDSK 253
+ + YI + G ++ +D + +C + L F
Sbjct: 296 -LTVDGNNANYI-YA--GYENGMLAQWDLRSPECPVGEFLIN---EGTPINNVYFAAG-A 347
Query: 254 YVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
+S D I + + +P + + +
Sbjct: 348 LFVSSGFDTSIKLDIISDPESERPAI-EFETPTFLVSNDDAVSQFCYV 394
Score = 78.1 bits (193), Expect = 3e-16
Identities = 19/181 (10%), Positives = 57/181 (31%), Gaps = 18/181 (9%)
Query: 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK-KYGVDLIRFTH 73
+L +T K ++++ G +I+ I +++ + SK + +
Sbjct: 241 QLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDG 300
Query: 74 AKQAAIHASTKIDDTVRY--LSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTV 131
I + + + L + + +N++ + F+S +D ++
Sbjct: 301 NNANYI-YAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAA-GALFVSSGFDTSI 358
Query: 132 RLWDLRSPNCQGIMHV-SGSRPIAAFDPEG--LIFG----------VGVNSDTIKLYDVR 178
+L + P + + + D + ++ LY++
Sbjct: 359 KLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418
Query: 179 S 179
+
Sbjct: 419 N 419
Score = 75.7 bits (187), Expect = 2e-15
Identities = 21/197 (10%), Positives = 51/197 (25%), Gaps = 42/197 (21%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG 164
TK + + + + + + N + + + + + G
Sbjct: 3 HMTKTITVAHIQYDFKAVLEENDENDDEFYINVDKN---LNEIKEHKIV--------VLG 51
Query: 165 VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDA 224
D G F G ++ + F+
Sbjct: 52 NSRGVDAG--------------------------KGNTFEKVGSHLYKARLDGHDFLFNT 85
Query: 225 YNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPS 284
+ L + + I G+T+G I + ++ + + A H S
Sbjct: 86 IIRDGSKMLKR----ADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA-HVS 140
Query: 285 PVQTIQFNPKFNMMASA 301
+ ++F P + S+
Sbjct: 141 EITKLKFFPSGEALISS 157
Score = 53.8 bits (130), Expect = 3e-08
Identities = 18/158 (11%), Positives = 49/158 (31%), Gaps = 28/158 (17%)
Query: 5 DNVIR------SYKVAKLFRENTDKITSIDYSA-DGLLLISCSEDDQIVIYDCELGTNKR 57
VI + +L + T S+ + + + E+ + +D L + +
Sbjct: 268 SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWD--LRSPEC 325
Query: 58 TVFSKKYG----VDLIRFTHAKQAAIHASTKIDDTVR---------YLSLHDNKYIRYFP 104
V ++ + F S+ D +++ + + +
Sbjct: 326 PVGEFLINEGTPINNVYFAAGALFV---SSGFDTSIKLDIISDPESERPAIEFETPTFLV 382
Query: 105 GHTKKVNSLCLSPIDDT---FISGSYDKTVRLWDLRSP 139
+ V+ C D++ + + L++L +P
Sbjct: 383 SNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSNP 420
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 104 bits (261), Expect = 2e-25
Identities = 12/236 (5%), Positives = 33/236 (13%), Gaps = 23/236 (9%)
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
T ++ K + + ++ + Y + L +
Sbjct: 40 RYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTG 99
Query: 141 CQGI--MHVSGSRPIAAFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKE- 195
I H G+ + +
Sbjct: 100 AHAIAGRHTPGTFTN-QLQTSFSEPRLL--ILTDPRTDHQPIK---ESALGNIPTIAFCD 153
Query: 196 ---CDW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNN--KGCPLEA 246
I A+ K G ++ + + +
Sbjct: 154 TDSPMRYVDIGIPANNKGKQSI--GCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211
Query: 247 SFT-PDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
+ + + P
Sbjct: 212 EEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQPAAIPAQAGADWT 267
Score = 94.9 bits (237), Expect = 3e-22
Identities = 0/298 (0%), Positives = 0/298 (0%), Gaps = 80/298 (26%)
Query: 5 DNVIR------------SYKVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCE 51
+ +A ++ + I A+ + +
Sbjct: 129 TDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQ 188
Query: 52 LGTNKRTVFSKKY-----GVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN-KYIRYFPG 105
+ ++ A+ D
Sbjct: 189 MRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEE-AALVAPDYGAVAEYAAPAADTWGGEW 247
Query: 106 HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGV 165
T P + + + AA
Sbjct: 248 GTDAAAQPAAIPAQAGADWTAAPAPAAGGWDTAAAPAPGWEQGSAPVPAAAP-------- 299
Query: 166 GVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS---IIRTF 222
N
Sbjct: 300 TPNW---------------------------------- 325
Query: 223 DAYNGQCLQTLAGFLNNKGCPLE--------ASFTPDSKYVISGSTDGRIHIWNAEKG 272
Sbjct: 326 ------- 376
Score = 80.3 bits (199), Expect = 4e-17
Identities = 8/200 (4%), Positives = 20/200 (10%), Gaps = 66/200 (33%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLI 162
+T ++ + +
Sbjct: 23 LAADVHLGTKNCD-FQMERYVYKRRTDGIYIINLGKTWEKLQLAAR-------------- 67
Query: 163 FGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS---II 219
+ + I+ D +
Sbjct: 68 ---VIVA-------------------------------IENPQDIIVQ-SA--RPYGQRA 90
Query: 220 RTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLD 279
A + K + +
Sbjct: 91 VLKFAQYTGAHAIAGR---HTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIP 147
Query: 280 A------DHPSPVQTIQFNP 293
D P I
Sbjct: 148 TIAFCDTDSPMRYVDIGIPA 167
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide
complex, E3 ubiquitin ligase, cell cycle, phospho
binding protein, phosphorylation; HET: SEP; 2.31A
{Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Length = 464
Score = 104 bits (262), Expect = 3e-25
Identities = 57/319 (17%), Positives = 99/319 (31%), Gaps = 58/319 (18%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
+ D L L + + +RT G H
Sbjct: 74 LNLKLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLR---G-------HMTS 123
Query: 77 ---AAIHASTKI-----DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD 128
+ D +R + K++ GH V +L + +SGS D
Sbjct: 124 VITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GGILVSGSTD 182
Query: 129 KTVRLWDLRSPNCQGIM--HVSGSRPIA-AFDPEG--LIFGVGVNSD--TIKLYDVRS-- 179
+TVR+WD++ C + H S R + ++ G S T+ ++ +
Sbjct: 183 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG----SRDNTLHVWKLPKES 238
Query: 180 -FDKGPFSNFKFAAEKECDWTGIK-------------FSADGKYILISTNGS---IIRTF 222
+ + S G + +S GS + +
Sbjct: 239 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIV-VS--GSYDNTLIVW 295
Query: 223 DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADH 282
D +CL L+G + + + K IS S D I IW+ E G + L H
Sbjct: 296 DVAQMKCLYILSGHTDRIYS---TIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GH 351
Query: 283 PSPVQTIQFNPKFNMMASA 301
+ V ++ + KF + SA
Sbjct: 352 TALVGLLRLSDKF--LVSA 368
Score = 90.0 bits (224), Expect = 3e-20
Identities = 40/290 (13%), Positives = 84/290 (28%), Gaps = 76/290 (26%)
Query: 26 SIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH----- 80
I + +++ S D+ + ++ ++ + + +
Sbjct: 210 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269
Query: 81 --------------ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGS 126
S D+T+ + K + GHT ++ S IS S
Sbjct: 270 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 127 YDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGP 184
D T+R+WDL + + H L+ + ++ + V
Sbjct: 330 MDTTIRIWDLENGELMYTLQGH------------TALVGLLRLSDKFL----V------- 366
Query: 185 FSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244
+ +ADG IR +DA + + +
Sbjct: 367 --------------SA---AADGS----------IRGWDANDYSRKFSYH----HTNLSA 395
Query: 245 EASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPK 294
+F ++SGS + + +I+N G V + ++ F K
Sbjct: 396 ITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK 444
Score = 58.0 bits (141), Expect = 1e-09
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 7/102 (6%)
Query: 203 FSADGKYILISTNGSIIRTFDAYNG-QCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD 261
D + N I++ + TL G + + + YVI+G+ D
Sbjct: 86 SQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMT----SVITCLQFEDNYVITGADD 141
Query: 262 GRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACT 303
I ++++ + L H V +++ ++ S T
Sbjct: 142 KMIRVYDSINKKFLLQLSG-HDGGVWALKYAHG-GILVSGST 181
Score = 49.6 bits (119), Expect = 7e-07
Identities = 13/117 (11%), Positives = 36/117 (30%), Gaps = 9/117 (7%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
T + + S L+S + D I +D + ++ + + F + +
Sbjct: 352 TALVGLLRLS--DKFLVSAAADGSIRGWDANDYS-RKFSYHHTNLSAITTFYVSDNILVS 408
Query: 81 ASTKIDDTVRYLSLHDNKYIRY-FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
S ++ +L K + ++ S+ T ++ ++
Sbjct: 409 GS---ENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEI 460
Score = 41.9 bits (99), Expect = 2e-04
Identities = 13/125 (10%), Positives = 29/125 (23%), Gaps = 49/125 (39%)
Query: 15 KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHA 74
K +T+ + +L+S S ++Q IY+ G L+
Sbjct: 385 KFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK-------------LVHAN-- 428
Query: 75 KQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD---KTV 131
++ S+ T ++ +
Sbjct: 429 ----------------------------ILKDADQIWSVNFKG--KTLVAAVEKDGQSFL 458
Query: 132 RLWDL 136
+ D
Sbjct: 459 EILDF 463
Score = 36.1 bits (84), Expect = 0.015
Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 6/85 (7%)
Query: 218 IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKV-C 276
++ + + + + +L L+ K D + + W K
Sbjct: 59 LLISENFVSPKGFNSLNLKLSQK---YPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRT 115
Query: 277 VLDADHPSPVQTIQFNPKFNMMASA 301
L H + V T + N + +
Sbjct: 116 TLRG-HMTSVITC-LQFEDNYVITG 138
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 103 bits (258), Expect = 7e-25
Identities = 36/327 (11%), Positives = 86/327 (26%), Gaps = 56/327 (17%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKK----------------Y 64
+ +T I + S+D QI++ + V Y
Sbjct: 111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEY 170
Query: 65 GVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYF--PGHTKKVNSLCLSPIDDTF 122
V + F + +++ + + V + + ++ V+S+C+
Sbjct: 171 AVRMRAFVNEEKSLL-VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVL 229
Query: 123 ISGSYDKTVRLWDLRSPNCQGIMHVSGSRPI-----AAFDPEGLIFGVGVNSD-TIKLYD 176
I G+ + +WD+R PI F + + VG +S + +++
Sbjct: 230 ILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289
Query: 177 VR--------------------SFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG 216
+ F + + ++ K +L
Sbjct: 290 FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEAT 349
Query: 217 SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVC 276
S I F + + F P ++ + + V
Sbjct: 350 SSIVMFSLNELSSSKAVISPSRFS-----DVFIPTQ---VTANLTMLLRKMKRTSTHSVD 401
Query: 277 VLDADHPSPVQTIQF--NPKFNMMASA 301
H + +I + ++ +
Sbjct: 402 DSLY-HHDIINSISTCEVDETPLLVAC 427
Score = 100 bits (251), Expect = 5e-24
Identities = 42/285 (14%), Positives = 80/285 (28%), Gaps = 72/285 (25%)
Query: 13 VAKLFRENTDKITSIDYS-ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRF 71
+A L + ITS S + LI+ S+ I I++ + S
Sbjct: 55 IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS--------SL 106
Query: 72 THAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTV 131
T+ + V + + P D F S D +
Sbjct: 107 TY-------------------------------DCSSTVTQITMIPNFDAFAVSSKDGQI 135
Query: 132 RLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA 191
+ + + + I + + + Y VR
Sbjct: 136 IVLKVNHYQQESEVKFLNCECIRKIN---------LKNFGKNEYAVRM------------ 174
Query: 192 AEKECDWTGIKFSADGKYILIS-TNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP 250
F + K +L++ TN S + FD + LQ + + G
Sbjct: 175 ---------RAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRH-GAVSSICIDE 224
Query: 251 DSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKF 295
+ +I G+T G I IW+ + +P+ ++ +
Sbjct: 225 ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY 269
Score = 81.0 bits (200), Expect = 4e-17
Identities = 25/221 (11%), Positives = 61/221 (27%), Gaps = 58/221 (26%)
Query: 98 KYIRYFPGHTK-KVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAA 155
K I + + S +SP + I+GS +++W+L+ +
Sbjct: 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY-----SSSLT 107
Query: 156 FDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTN 215
+D V I + +S+
Sbjct: 108 YDCSS-----TVTQ-------------------------------ITMIPNFDAFAVSSK 131
Query: 216 GSIIRTFDAYNGQCLQT-------------LAGFLNNKGCPLEASFTPDSKYVI-SGSTD 261
I + Q L F N+ +F + K ++ + +
Sbjct: 132 DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL 191
Query: 262 GRIHIWNAEKGFKVCVLDAD-HPSPVQTIQFNPKFNMMASA 301
R+ I++ ++ +++ V +I + + ++
Sbjct: 192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILG 232
Score = 75.6 bits (186), Expect = 2e-15
Identities = 25/256 (9%), Positives = 66/256 (25%), Gaps = 42/256 (16%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG-----VDLIRFTHAK 75
++SI + +LI + I I+D R+ + +
Sbjct: 214 HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNS 273
Query: 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135
+ S+ + + F ++ + PI + +
Sbjct: 274 VIVVGGSS--KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI------EKGLEELNFCG 325
Query: 136 LRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKE 195
+RS N + VS + + + +I ++ + E
Sbjct: 326 IRSLNALSTISVSNDKILLT----------DEATSSIVMFSL--------------NELS 361
Query: 196 CDWTGIKFSADGKYI----LISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD 251
I S + + ++R + + + + +
Sbjct: 362 SSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINS-ISTCEVDE 420
Query: 252 SKYVISGSTDGRIHIW 267
+ +++ G I I+
Sbjct: 421 TPLLVACDNSGLIGIF 436
Score = 48.6 bits (116), Expect = 1e-06
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 10/109 (9%)
Query: 201 IKFSADGK-YILISTNGSIIRTFD--AYNGQCLQTLAGFLNNKGCPLEASFTP-DSKYVI 256
K + Y I+R+ + G+ + TL N ++ +P ++ Y+I
Sbjct: 23 FKILPPLRDYKEFGPIQEIVRSPNMGNLRGKLIATLME--NEPNSITSSAVSPGETPYLI 80
Query: 257 SGSTDGRIHIWNAEKGFKV----CVLDADHPSPVQTIQFNPKFNMMASA 301
+GS G I IWN ++ L D S V I P F+ A +
Sbjct: 81 TGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVS 129
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein;
RACK1, WD40, beta propeller, ribosome, translation,
acetylation; 2.13A {Saccharomyces cerevisiae} PDB:
3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A
3jyv_R*
Length = 319
Score = 100 bits (252), Expect = 1e-24
Identities = 46/266 (17%), Positives = 82/266 (30%), Gaps = 60/266 (22%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
F + + S+D ++IS S D I ++ G T+ V +R ++
Sbjct: 103 FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEK 161
Query: 77 AAIH----ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTV 131
A S D V+ +L+ + F GH +N+L SP D T I S D +
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEI 220
Query: 132 RLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA 191
LW+L + + V S
Sbjct: 221 MLWNLAAKKAMYTLSAQDE----------------VFS---------------------- 242
Query: 192 AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA----- 246
+ FS + ++ + + I+ F + L E
Sbjct: 243 ---------LAFSPNRYWL-AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL 292
Query: 247 SFTPDSKYVISGSTDGRIHIWNAEKG 272
+++ D + + +G TD I +W
Sbjct: 293 AWSADGQTLFAGYTDNVIRVWQVMTA 318
Score = 95.7 bits (239), Expect = 8e-23
Identities = 55/295 (18%), Positives = 97/295 (32%), Gaps = 70/295 (23%)
Query: 21 TDKITSIDYS-ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAI 79
+TS+ S LL+S S D ++ + +K+GV + F
Sbjct: 17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGD-------DQKFGVPVRSFK------- 62
Query: 80 HASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRS 138
GH+ V L+ D + S S+DKT+RLWD+ +
Sbjct: 63 -------------------------GHSHIVQDCTLTA-DGAYALSASWDKTLRLWDVAT 96
Query: 139 PNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC 196
H S + D + + G TIK++ ++
Sbjct: 97 GETYQRFVGHKSDVMSV-DIDKKASMIISGSRDKTIKVWTIKGQCLATL-------LGHN 148
Query: 197 DW-TGIKFS------ADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEA 246
DW + ++ D I IS +++ ++ Q G +
Sbjct: 149 DWVSQVRVVPNEKADDDSVTI-IS--AGNDKMVKAWNLNQFQIEADFIG---HNSNINTL 202
Query: 247 SFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
+ +PD + S DG I +WN + L V ++ F+P +A+A
Sbjct: 203 TASPDGTLIASAGKDGEIMLWNLAAKKAMYTL--SAQDEVFSLAFSPNRYWLAAA 255
Score = 81.8 bits (203), Expect = 7e-18
Identities = 43/192 (22%), Positives = 67/192 (34%), Gaps = 47/192 (24%)
Query: 103 FPGHTKKVNSLCLSPID-DTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGL 161
GH V SL S + +S S DKT+ W L + + G P+ +F +G
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-----FG-VPVRSF--KG- 63
Query: 162 IFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRT 221
+S V+ +ADG Y L ++ +R
Sbjct: 64 ------HSHI-----VQD---------------------CTLTADGAYALSASWDKTLRL 91
Query: 222 FDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD 281
+D G+ Q G +K + + +ISGS D I +W KG + L
Sbjct: 92 WDVATGETYQRFVG---HKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLL-G 146
Query: 282 HPSPVQTIQFNP 293
H V ++ P
Sbjct: 147 HNDWVSQVRVVP 158
Score = 35.6 bits (83), Expect = 0.019
Identities = 15/81 (18%), Positives = 21/81 (25%), Gaps = 10/81 (12%)
Query: 227 GQCLQTLAGFLNNKGCPLEASFTP-DSKYVISGSTDGRIHIWNAEK-----GFKVCVLDA 280
TL G + G + + ++S S D + W G V
Sbjct: 7 LVLRGTLEG---HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK- 62
Query: 281 DHPSPVQTIQFNPKFNMMASA 301
H VQ SA
Sbjct: 63 GHSHIVQDCTLTADGAYALSA 83
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1
PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C*
2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Length = 372
Score = 101 bits (254), Expect = 1e-24
Identities = 40/307 (13%), Positives = 88/307 (28%), Gaps = 78/307 (25%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ I+ ++ D + C + ++ IY+ +
Sbjct: 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ----------------------- 44
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSP 139
+ H +V + +P D I + D+ +W L+
Sbjct: 45 -------------------VHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGR 84
Query: 140 NCQGIMHVSG-SRPI--AAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC 196
+ + + +R + P F VG S I + + +
Sbjct: 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR-- 142
Query: 197 DW-TGIKFSADGKYILISTNGS---IIRTFDAY------------------NGQCLQTLA 234
+ + + + + GS R F AY G+ + +
Sbjct: 143 STVLSLDWHPNSVLL-AA--GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 199
Query: 235 GFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPK 294
+ G F+ + V S D + + +A+K V L A P+ + F +
Sbjct: 200 S---SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL-ASETLPLLAVTFITE 255
Query: 295 FNMMASA 301
+++A+
Sbjct: 256 SSLVAAG 262
Score = 93.8 bits (234), Expect = 7e-22
Identities = 45/317 (14%), Positives = 93/317 (29%), Gaps = 77/317 (24%)
Query: 5 DNVIRSYKVA-------KLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR 57
++ + Y+ + +E+ ++T +D++ D +++C D ++ + T K
Sbjct: 29 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 88
Query: 58 TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP 117
T + + +P
Sbjct: 89 T------------------------------------------LVILRINRAARCVRWAP 106
Query: 118 IDDTFISGSYDKTVRLWDLRSPNCQGIM------HVSGSRPIAAFDPEGLIFGVGVNSD- 170
+ F GS + + + N + S + + P ++ G S
Sbjct: 107 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSL-DWHPNSVLLAAG--SCD 163
Query: 171 -TIKLYDVR------------SFDKGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNG 216
+++ K PF F + C W G+ FSA+G + ++
Sbjct: 164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD 223
Query: 217 SIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVC 276
S + DA + TLA L +F +S V +G D ++ +
Sbjct: 224 STVCLADADKKMAVATLAS---ETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKL 279
Query: 277 VLDADHPSPVQTIQFNP 293
P Q+ Q
Sbjct: 280 SFGGRLDVPKQSSQRGL 296
Score = 92.7 bits (231), Expect = 2e-21
Identities = 37/259 (14%), Positives = 72/259 (27%), Gaps = 45/259 (17%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ S+D+ + +LL + S D + I+ +
Sbjct: 142 RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE-------------------------- 175
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
+ T + + + V+ +C S S+D TV L D
Sbjct: 176 VEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM 235
Query: 141 CQGIMHVSG-SRPI--AAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECD 197
+ ++ + P+ F E + G + L+ S G S F +
Sbjct: 236 A--VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS-AAGKLS---FGGRLDVP 288
Query: 198 WTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI- 256
+ + + + A G L +L +K + S K
Sbjct: 289 KQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL-----HKNSVSQISVLSGGKAKCS 343
Query: 257 ---SGSTDGRIHIWNAEKG 272
+ DG + IW+
Sbjct: 344 QFCTTGMDGGMSIWDVRSL 362
Score = 71.1 bits (175), Expect = 5e-14
Identities = 20/186 (10%), Positives = 54/186 (29%), Gaps = 35/186 (18%)
Query: 105 GHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNCQGIMHVSG-SRPI--AAFDPEG 160
+ ++ + D T I + V +++ + + + + + P+
Sbjct: 6 FLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 64
Query: 161 --LIFGVGVNSD--TIKLYDVRSFD---KGPFSNFKFAAEKECDWTGIKFSADGKYILIS 213
++ ++ ++ AA ++++ + K
Sbjct: 65 NRIVTC----GTDRNAYVWTLKGRTWKPTLVILRINRAA------RCVRWAPNEKKF-AV 113
Query: 214 TNGS---IIRTFDAYNGQ----CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHI 266
GS +I C + L + P+S + +GS D + I
Sbjct: 114 --GSGSRVISICYFEQENDWWVCKHIKKPI---RSTVLSLDWHPNSVLLAAGSCDFKCRI 168
Query: 267 WNAEKG 272
++A
Sbjct: 169 FSAYIK 174
Score = 61.5 bits (150), Expect = 7e-11
Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 8/126 (6%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
T + ++ + + L+ + D V++ + K + F + V
Sbjct: 240 LASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLS-FGGRLDVPKQSSQRGLT 297
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP----IDDTFISGSYDKTVR 132
A S + H V+ + + F + D +
Sbjct: 298 ARERFQNLDKKASSEGSAAAGAGLD--SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 355
Query: 133 LWDLRS 138
+WD+RS
Sbjct: 356 IWDVRS 361
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national
project on prote structural and functional analysis,
structural genomics CON SGC; HET: M3L; 1.58A {Homo
sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A*
3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Length = 366
Score = 100 bits (251), Expect = 3e-24
Identities = 42/308 (13%), Positives = 94/308 (30%), Gaps = 62/308 (20%)
Query: 26 SIDYSADGLLLISCSEDDQIVIYDCELGTNKRT-------VFSKKYGVDLIRFTHAKQAA 78
+ D + LL I I + + + ++F
Sbjct: 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINE-------LKFHPRDPNL 130
Query: 79 IHASTKIDDTVRYLSLHDNKYIRYFP---GHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135
+ S D +R ++ + + F GH +V S + + +S D +++LW
Sbjct: 131 L-LSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 189
Query: 136 LRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE 193
+ S + ++P S I D + +
Sbjct: 190 INSKRMMNAIKESY-------DYNPNKTNRPFI--SQKIHFPDFSTR------------D 228
Query: 194 KECDW-TGIKFSADGKYIL-ISTNGSI---------IRTFDAYNGQCLQTLAGFLNNKGC 242
++ +++ G IL S +I + T+ G + C
Sbjct: 229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC 286
Query: 243 PLEA-SFTPDS--KYVISGSTDGRIHIWNAE----KGFKVCVLDA-DHPSPVQTIQFNPK 294
+ F+ D K + G+ G++++W+ E K L + ++ F+
Sbjct: 287 DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD 346
Query: 295 FNMMASAC 302
+++ + C
Sbjct: 347 SSILIAVC 354
Score = 96.6 bits (241), Expect = 8e-23
Identities = 45/302 (14%), Positives = 90/302 (29%), Gaps = 47/302 (15%)
Query: 9 RSYK-VAKLFRENTDKITSI---DYSADGLLLISCSEDDQ-IVIYDCELGTNKRTV---- 59
S+K V L ++ + + +S +G L+ + + +Y+C R +
Sbjct: 5 YSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYV 64
Query: 60 -FSKKYGVDLIRFTHAKQAAIH--ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLS 116
+T+ + A +R ++ + I+++ GH +N L
Sbjct: 65 DADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH 124
Query: 117 PIDDTFI-SGSYDKTVRLWDLRSPNCQGIMH-VSG-SRPI--AAFDPEGLIFGVGVNSDT 171
P D + S S D +RLW++++ I V G + A +D G +
Sbjct: 125 PRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHS 184
Query: 172 IKLYDVRSFDKGPFSNFKFAAEKECDWT---GIKFSADGKYILISTNGSIIRTFDAYNGQ 228
+KL+ + S K ++ + + I D
Sbjct: 185 LKLWRINS--------------KRMMNAIKESYDYNPNKTNRPFISQ--KIHFPDFSTRD 228
Query: 229 CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQT 288
+ ++S S + I W K S V
Sbjct: 229 IHRNYVD-----------CVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTI 277
Query: 289 IQ 290
+
Sbjct: 278 LG 279
Score = 81.5 bits (202), Expect = 2e-17
Identities = 40/256 (15%), Positives = 71/256 (27%), Gaps = 55/256 (21%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
D++ S DY G ++SC D + ++ + K D + K
Sbjct: 161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI---KESYD---YNPNKT--NR 212
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
I + + H V+ + D +S S + + W
Sbjct: 213 PF--ISQKIHFPDFSTRD------IHRNYVDCVRWLG--DLILSKSCENAIVCWKPGKME 262
Query: 141 CQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTG 200
D IK + G F +CD
Sbjct: 263 DDI--------------------------DKIKPSESNVTILGRFD------YSQCDIWY 290
Query: 201 IKFSAD--GKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLE---ASFTPDSKYV 255
++FS D K + + + +D + L + C SF+ DS +
Sbjct: 291 MRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL 350
Query: 256 ISGSTDGRIHIWNAEK 271
I+ D I W+ +
Sbjct: 351 IAVCDDASIWRWDRLR 366
Score = 72.3 bits (178), Expect = 2e-14
Identities = 28/210 (13%), Positives = 57/210 (27%), Gaps = 59/210 (28%)
Query: 105 GHTKKVNSLC---LSPIDDTFISGSY-DKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEG 160
H + + + S D + + V L++ S ++ +
Sbjct: 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLL-------------QS 62
Query: 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK---YILISTNGS 217
D + + ++ D +L
Sbjct: 63 -------YVDADADENFYT---------------------CAWTYDSNTSHPLLAV--AG 92
Query: 218 ---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP-DSKYVISGSTDGRIHIWNAEKGF 273
IIR + QC++ G + E F P D ++S S D + +WN +
Sbjct: 93 SRGIIRIINPITMQCIKHYVG---HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 149
Query: 274 KVCVLDAD--HPSPVQTIQFNPKFNMMASA 301
V + H V + ++ + S
Sbjct: 150 LVAIFGGVEGHRDEVLSADYDLLGEKIMSC 179
Score = 38.4 bits (90), Expect = 0.002
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 30/98 (30%)
Query: 225 YNGQCLQTLAGFLNNKGCPLE--------ASFTPDSKY----VISGSTDGRIHIWNAEKG 272
Y+ +C+ +L E F SK V + R+ ++
Sbjct: 5 YSFKCVNSL----------KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ 54
Query: 273 FKVCVL----DADHPSPVQTIQFNPKFN----MMASAC 302
++ +L DAD T + N ++A A
Sbjct: 55 GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92
Score = 30.7 bits (70), Expect = 0.58
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYD 49
+ I +S D +LI+ +D I +D
Sbjct: 333 KCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural
protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Length = 402
Score = 100 bits (252), Expect = 4e-24
Identities = 48/293 (16%), Positives = 98/293 (33%), Gaps = 39/293 (13%)
Query: 5 DNVIRSYKVAKLFRENTDKITSIDYS-ADGLLLISCSEDDQIVIYDCELGTNKRTVF--- 60
R K L +T + I + + ++ S SED +++++ G +
Sbjct: 65 GKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPV 124
Query: 61 ------SKKYGVDLIRFTH-AKQAAIHASTKIDDTVRYLSLHDNKYIRYFP--GHTKKVN 111
+K+ V ++ + A+ + S D+ + + + H +
Sbjct: 125 ITLEGHTKR--VGIVAWHPTAQN--VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY 180
Query: 112 SLCLSPIDDTFISGSYDKTVRLWDLRSPNCQG--IMHVSGSRPI-AAFDPEGLIFGVGVN 168
S+ S + DK VR+ + R G+RP+ A F EG I G +
Sbjct: 181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240
Query: 169 --SD-TIKLYDVRSFDKGPFSNFKFAAEKECDWTG----IKFSADGKYILISTNG-SIIR 220
S+ + L+D + + + + +E D + F D + + G S IR
Sbjct: 241 RMSERQVALWDTKHLE-------EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIR 293
Query: 221 TFDAYNGQ-CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
F+ + L L+ F + K + + + +
Sbjct: 294 YFEITSEAPFLHYLSMF---SSKESQRGMGYMPKRGLEVNKCEIARFYKLHER 343
Score = 79.7 bits (197), Expect = 7e-17
Identities = 33/189 (17%), Positives = 58/189 (30%), Gaps = 46/189 (24%)
Query: 100 IRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDP 158
+ GHT V + P +D I SGS D TV +W++ G + +P
Sbjct: 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD----------GGLVLPLREP 123
Query: 159 EGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSI 218
+ G ++ V + + + +L+S
Sbjct: 124 VITLEG---HTKR-----VGI---------------------VAWHPTAQNVLLS--AGC 152
Query: 219 ---IRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKV 275
I +D G + TL + ++ D + + D R+ + KG V
Sbjct: 153 DNVILVWDVGTGAAVLTLG-PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV 211
Query: 276 CVLDADHPS 284
D H
Sbjct: 212 AEKDRPHEG 220
Score = 68.9 bits (169), Expect = 3e-13
Identities = 30/229 (13%), Positives = 72/229 (31%), Gaps = 34/229 (14%)
Query: 21 TDKITSIDYSADGL-LLISCSEDDQIVIYDCELGTNKRT---------VFSKKYGVDLIR 70
T ++ + + +L+S D+ I+++D G T ++S + D
Sbjct: 131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL 190
Query: 71 FTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTK--KVNSLCLSPIDDTFISG--- 125
++ D VR + + + + +G
Sbjct: 191 I---------CTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSR 241
Query: 126 SYDKTVRLWDLRSPNCQGIMHVSGSRP---IAAFDPEG-LIFGVGVNSDTIKLYDVRSFD 181
++ V LWD + + + + FDP+ +++ G +I+ +++ S
Sbjct: 242 MSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS-- 299
Query: 182 KGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSIIRTFDAYNGQC 229
+ + G+ + K L I R + + +C
Sbjct: 300 -EAPFLHYLSMFSSKESQRGMGYM--PKRGLEVNKCEIARFYKLHERKC 345
Score = 57.0 bits (138), Expect = 3e-09
Identities = 19/130 (14%), Positives = 46/130 (35%), Gaps = 11/130 (8%)
Query: 23 KITSIDYSADGLLLISC---SEDDQIVIYDCELGTNKRTVFSK--KYGVDLIRFTHAKQA 77
+ + ++G +L + + Q+ ++D + ++ GV L F
Sbjct: 222 RPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNI 281
Query: 78 AIHASTKIDDTVRYLSLHDNK-YIRYFPGHTKK--VNSLCLSPIDDTFISGSYDKTVRLW 134
++ K D ++RY + ++ Y + K + P + + + R +
Sbjct: 282 -VYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP--KRGLEVNKCEIARFY 338
Query: 135 DLRSPNCQGI 144
L C+ I
Sbjct: 339 KLHERKCEPI 348
Score = 51.6 bits (124), Expect = 1e-07
Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 19/115 (16%)
Query: 201 IKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEA--------SFT 249
I + ++ S GS + ++ +G + L + LE ++
Sbjct: 87 IAWCPHNDNVIAS--GSEDCTVMVWEIPDGGLVLPLREPV----ITLEGHTKRVGIVAWH 140
Query: 250 PDSKYVI-SGSTDGRIHIWNAEKGFKVCVLDAD-HPSPVQTIQFNPKFNMMASAC 302
P ++ V+ S D I +W+ G V L D HP + ++ ++ ++ ++C
Sbjct: 141 PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A,
receptor for activiated protein C-kinase 1,
beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
coli}
Length = 694
Score = 100 bits (251), Expect = 1e-23
Identities = 70/299 (23%), Positives = 115/299 (38%), Gaps = 66/299 (22%)
Query: 15 KLFRENTDKITSIDYSAD-GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTH 73
R +TD +T+I D +++S S D I+++ K YGV R T
Sbjct: 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKD-------DKAYGVAQRRLT- 427
Query: 74 AKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVR 132
GH+ V + LS D F SGS+D +R
Sbjct: 428 -------------------------------GHSHFVEDVVLSS-DGQFALSGSWDGELR 455
Query: 133 LWDLRSPNCQGIM--HVSGSRPIAAFDPEG--LIFGVGVNSD--TIKLYDVRSFDKGPFS 186
LWDL + H + AF + ++ S TIKL++ K S
Sbjct: 456 LWDLAAGVSTRRFVGHTKDVLSV-AFSLDNRQIVSA----SRDRTIKLWNTLGECKYTIS 510
Query: 187 NFKFAAEKECDW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGC 242
E DW + ++FS + I + S ++ ++ N + TLAG + G
Sbjct: 511 E---GGEGHRDWVSCVRFSPNTLQPTIVS-ASWDKTVKVWNLSNCKLRSTLAG---HTGY 563
Query: 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
+ +PD SG DG + +W+ +G K+ L+A + S + + F+P + +A
Sbjct: 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-N-SVIHALCFSPNRYWLCAA 620
Score = 100 bits (251), Expect = 1e-23
Identities = 54/276 (19%), Positives = 95/276 (34%), Gaps = 71/276 (25%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG----VDLIRFT 72
F +T + S+ +S D ++S S D I +++ LG K T+ G V +RF+
Sbjct: 468 FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT-LGECKYTISEGGEGHRDWVSCVRFS 526
Query: 73 HAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTV 131
S D TV+ +L + K GHT V+++ +SP D + SG D V
Sbjct: 527 PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVV 585
Query: 132 RLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA 191
LWDL + + +++
Sbjct: 586 LLWDLAEGKKLYSLEANSV----------------IHA---------------------- 607
Query: 192 AEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA----- 246
+ FS + Y L + I+ +D + ++ L L + +
Sbjct: 608 ---------LCFSPNR-YWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAA 657
Query: 247 -----------SFTPDSKYVISGSTDGRIHIWNAEK 271
+++ D + SG TDG I +W +
Sbjct: 658 TKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693
Score = 82.0 bits (203), Expect = 2e-17
Identities = 55/300 (18%), Positives = 103/300 (34%), Gaps = 72/300 (24%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ + + S+DG +S S D ++ ++D G + R V + F+ + +
Sbjct: 430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVS 489
Query: 81 ASTKIDDTVR---YLSLHDNKYIRYFPGHTKKVNSLCLSP--IDDTFISGSYDKTVRLWD 135
AS D T++ L GH V+ + SP + T +S S+DKTV++W+
Sbjct: 490 ASR--DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 136 LRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE 193
L + + + H +G V++
Sbjct: 548 LSNCKLRSTLAGH-TGY----------------VST------------------------ 566
Query: 194 KECDWTGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFT 249
+ S DG S G ++ +D G+ L +L + A F+
Sbjct: 567 -------VAVSPDGSLC-AS--GGKDGVVLLWDLAEGKKLYSLEA-----NSVIHALCFS 611
Query: 250 PDSKYVISGSTDGRIHIWNAEKGFKVCVL--DADHPSPVQTIQFNPKFNMMASACTNLAF 307
P+ ++ + + + I IW+ E V L D + CT+L +
Sbjct: 612 PNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW 670
Score = 68.6 bits (168), Expect = 5e-13
Identities = 31/209 (14%), Positives = 61/209 (29%), Gaps = 24/209 (11%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRS----PNCQGIMHVSGSRPIAAFDPEG 160
K + ++ L ++ + + + PN + + A +
Sbjct: 294 NKDKPLGAVALKSYEEELAKDPRIAA-TMENAQKGEIMPNIPQMSAFWYAVRTAVIN--- 349
Query: 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS--- 217
G + L ++ T I D I++S S
Sbjct: 350 --AASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPIDNADIIVS--ASRDK 405
Query: 218 IIR-----TFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
I D G + L G + + + D ++ +SGS DG + +W+ G
Sbjct: 406 SIILWKLTKDDKAYGVAQRRLTG---HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG 462
Query: 273 FKVCVLDADHPSPVQTIQFNPKFNMMASA 301
H V ++ F+ + SA
Sbjct: 463 VSTRRFV-GHTKDVLSVAFSLDNRQIVSA 490
Score = 56.2 bits (136), Expect = 6e-09
Identities = 22/198 (11%), Positives = 58/198 (29%), Gaps = 71/198 (35%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
D ++ + K+ +T ++++ S DG L S +D ++++D G +
Sbjct: 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS- 598
Query: 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPID 119
++ +++LC SP +
Sbjct: 599 -------------------------------------------LEANS-VIHALCFSP-N 613
Query: 120 DTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFG--VGVNS------ 169
++ + + +++WDL S + + + A + S
Sbjct: 614 RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD 673
Query: 170 ----------DTIKLYDV 177
I+++ +
Sbjct: 674 GSTLFSGYTDGVIRVWGI 691
Score = 28.9 bits (65), Expect = 2.7
Identities = 5/37 (13%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 236 FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
+N + + + + NA+KG
Sbjct: 292 AVNKDKPLGAVALKSYEEELAKDPRI-AATMENAQKG 327
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 97.9 bits (244), Expect = 3e-23
Identities = 30/330 (9%), Positives = 80/330 (24%), Gaps = 88/330 (26%)
Query: 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFT 72
+++ +++ ++ + +Q+ +Y+ + K
Sbjct: 3 TSQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKH--------------- 47
Query: 73 HAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVR 132
R F H K V + +P + ++ S D+
Sbjct: 48 ---------------------------ARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAY 80
Query: 133 LWDLRSPN-----------CQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD 181
+++ R + V + P F VG + I + +
Sbjct: 81 VYEKRPDGTWKQTLVLLRLNRAATFV-------RWSPNEDKFAVGSGARVISVCYFEQEN 133
Query: 182 KGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFL 237
S + + + + L + G AY +
Sbjct: 134 DWWVSKHLKRPLR--STILSLDWHPNNVL-LAA--GCADRKAYVLSAYVRDVDAKPEASV 188
Query: 238 NNKGCPLEA--------------SFTPDSKYVISGSTDGRIHIWNAEKG---FKVCVLDA 280
P F+P + D + I + +
Sbjct: 189 WGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK 248
Query: 281 DHPSPVQTIQFNPKFNMMASA--CTNLAFW 308
P++++ + + ++A+ + +
Sbjct: 249 LSQLPLRSLLWANESAIVAAGYNYSPILLQ 278
Score = 86.3 bits (214), Expect = 4e-19
Identities = 37/336 (11%), Positives = 86/336 (25%), Gaps = 81/336 (24%)
Query: 5 DNVIR-------SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR 57
N + +K A+ F ++ +T +D++ +++CS+D +Y+
Sbjct: 32 TNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG--- 88
Query: 58 TVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSP 117
K + + SP
Sbjct: 89 --------------------------------------TWKQTLVLLRLNRAATFVRWSP 110
Query: 118 IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPI----------AAFDPEGLIFGVGV 167
+D F GS + + + N + S+ + + P ++ G
Sbjct: 111 NEDKFAVGSGARVISVCYFEQENDWWV-----SKHLKRPLRSTILSLDWHPNNVLLAAG- 164
Query: 168 NSD--TIKLYDV--RSFDKGPFSNFKFAAEKEC---------DW-TGIKFSADGKYILIS 213
+ R D P ++ + W + FS G + +
Sbjct: 165 -CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYA 223
Query: 214 TNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHIWNAEKG 272
+ S + + + PL + + +S V +G + + +
Sbjct: 224 GHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY-NYSPILLQGNES 282
Query: 273 FKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFW 308
D D + + ++F
Sbjct: 283 GWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFT 318
Score = 69.4 bits (170), Expect = 2e-13
Identities = 34/290 (11%), Positives = 75/290 (25%), Gaps = 60/290 (20%)
Query: 5 DNVIR---------SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTN 55
VI + L R I S+D+ + +LL + D + + +
Sbjct: 121 ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDV 180
Query: 56 KRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCL 115
+ +G L T + V+++
Sbjct: 181 DAKPEASVWGSRLPFNT---------------------------VCAEYPSGGWVHAVGF 213
Query: 116 SPIDDTFISGSYDKTVRLWDLRSPNCQG--IMHVSG-SRPI--AAFDPEGLIFGVGVNSD 170
SP + +D +V + +P ++ V P+ + E I G +
Sbjct: 214 SPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAG-YNY 272
Query: 171 TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCL 230
+ L S + + + + F+ G + +
Sbjct: 273 SPILLQGNE------SGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRN 326
Query: 231 QTLAGFLNNKGCPLE---------ASFTPDSKYVISGST---DGRIHIWN 268
L G + + + + ++ DGR+ +W
Sbjct: 327 MDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376
Score = 37.8 bits (88), Expect = 0.004
Identities = 14/140 (10%), Positives = 34/140 (24%), Gaps = 31/140 (22%)
Query: 18 RENTDKITSIDYSADGLLLISCSEDDQIVIYDCE---------LGTNKRTVFSKKYGVDL 68
+ + + S+ ++ + ++ + + ++ L G
Sbjct: 248 KLSQLPLRSLLWANESAIVAA-GYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTG 306
Query: 69 IRFTHAKQAAIHASTKI----------DDTVRYLSLHDNKY--IRYFPGHTKKVNSLCLS 116
+ A ++H N +R + G + +
Sbjct: 307 EGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFT-- 364
Query: 117 PIDDTFISGSYDKTVRLWDL 136
S D V LW L
Sbjct: 365 -------SSGTDGRVVLWTL 377
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_R
Length = 343
Score = 96.1 bits (240), Expect = 8e-23
Identities = 64/301 (21%), Positives = 105/301 (34%), Gaps = 68/301 (22%)
Query: 21 TDKITSI------DYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHA 74
+D +TSI + D +LIS S D ++I+ +G+ T
Sbjct: 21 SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-----FGIPHKALT-- 73
Query: 75 KQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRL 133
GH V+ L LS ++ F S S+DKT+RL
Sbjct: 74 ------------------------------GHNHFVSDLALSQ-ENCFAISSSWDKTLRL 102
Query: 134 WDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA 191
WDLR+ H S + AF P+ IKL+++ K +
Sbjct: 103 WDLRTGTTYKRFVGHQSEVYSV-AFSPDNRQILSAGAEREIKLWNILGECKFSSAEK--- 158
Query: 192 AEKECDW-TGIKFSADGK-YILISTNGSI---------IRTFDAYNGQCLQTLAGFLNNK 240
E DW + +++S K + ++ ++ N Q T ++
Sbjct: 159 -ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKA---HE 213
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMAS 300
S +P+ KY+ +G D ++ IW+ D S + I FNPK +A
Sbjct: 214 SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAV 272
Query: 301 A 301
Sbjct: 273 G 273
Score = 93.8 bits (234), Expect = 6e-22
Identities = 43/303 (14%), Positives = 84/303 (27%), Gaps = 89/303 (29%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
++ + S + IS S D + ++D GT +
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKR---------------------- 113
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSP 139
F GH +V S+ SP D+ I S ++ ++LW++
Sbjct: 114 ----------------------FVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGE 150
Query: 140 NCQGIMHVSG-SRPI--AAFDPEGLIFGVGVNSD----------TIKLYDVRSFDKGPFS 186
S + + P +K+++ + F
Sbjct: 151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFK 210
Query: 187 NFKFAAEKECDW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGC 242
+ + S +GKYI + G + +D N Q
Sbjct: 211 AHE-------SNVNHLSISPNGKYI-AT--GGKDKKLLIWDILNLTYPQREFD---AGST 257
Query: 243 PLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD------------HPSPVQTIQ 290
+ +F P ++V G+ D + I+N K V + ++
Sbjct: 258 INQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLA 316
Query: 291 FNP 293
+N
Sbjct: 317 WNA 319
Score = 90.0 bits (224), Expect = 1e-20
Identities = 37/281 (13%), Positives = 81/281 (28%), Gaps = 78/281 (27%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK--KYGVDLIRF--- 71
F + ++ S+ +S D ++S + +I +++ + + V +R+
Sbjct: 114 FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPI 173
Query: 72 -----THAKQAAIHASTKIDDTVRYLSLHD--NKYIRYFPGHTKKVNSLCLSPIDDTFI- 123
A AS D ++ + + + F H VN L +SP + +I
Sbjct: 174 MKSANKVQPFAPYFASVGWDGRLK---VWNTNFQIRYTFKAHESNVNHLSISP-NGKYIA 229
Query: 124 SGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD 181
+G DK + +WD+ + S +N
Sbjct: 230 TGGKDKKLLIWDILNLTYPQREFDAGST-----------------INQ------------ 260
Query: 182 KGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKG 241
I F+ +++ ++ F+
Sbjct: 261 -------------------IAFNPKLQWV-AVGTDQGVKIFNLMTQSKAPVCTIEAEPIT 300
Query: 242 C--PLEA--------SFTPDSKYVISGSTDGRIHIWNAEKG 272
+ ++ K + +G TDG I ++ E
Sbjct: 301 KAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341
Score = 80.3 bits (199), Expect = 3e-17
Identities = 35/203 (17%), Positives = 65/203 (32%), Gaps = 59/203 (29%)
Query: 103 FPGHTKKVNSLC------LSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAF 156
GH+ V S+ + ISGS DKTV +W L G
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG------------- 63
Query: 157 DPEGLIFGVGVNSDTIK--LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST 214
G+ + + V + S + + + S
Sbjct: 64 -------YFGIPHKALTGHNHFVSD---------------------LALSQENCFAI-S- 93
Query: 215 NGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEK 271
S +R +D G + G ++ +F+PD++ ++S + I +WN
Sbjct: 94 -SSWDKTLRLWDLRTGTTYKRFVG---HQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149
Query: 272 GFKVCVLDAD-HPSPVQTIQFNP 293
K + + H V ++++P
Sbjct: 150 ECKFSSAEKENHSDWVSCVRYSP 172
Score = 67.6 bits (166), Expect = 6e-13
Identities = 20/151 (13%), Positives = 51/151 (33%), Gaps = 20/151 (13%)
Query: 5 DNVIR----SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF 60
D ++ ++++ F+ + + + S +G + + +D +++I+D T + F
Sbjct: 193 DGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF 252
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVR-------------YLSLHDNKYIRYFPGHT 107
++ I F Q + D V+ + G
Sbjct: 253 DAGSTINQIAFNPKLQWVAVGT---DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN 309
Query: 108 KKVNSLCLSPIDDTFISGSYDKTVRLWDLRS 138
+ SL + + +G D +R + +
Sbjct: 310 PQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340
Score = 32.2 bits (74), Expect = 0.22
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTN 55
+ TS+ ++A G L + D I + E N
Sbjct: 309 NPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSAN 343
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription
inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP:
b.69.4.1
Length = 393
Score = 96.1 bits (240), Expect = 1e-22
Identities = 55/313 (17%), Positives = 96/313 (30%), Gaps = 96/313 (30%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
T + + +S DG L + + +Y G+ + + +
Sbjct: 64 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122
Query: 81 ----------------ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI- 123
A+ D +R + + K + GH + + SL P +
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLV 181
Query: 124 SGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKG 183
SGS D+TVR+WDLR+ C + S GV +
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTL--SIED--------------GVTT-------------- 211
Query: 184 PFSNFKFAAEKECDWTGIKFS-ADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNN 239
+ S DGKYI + GS+ +R +D+ G ++ L++
Sbjct: 212 -----------------VAVSPGDGKYI-AA--GSLDRAVRVWDSETGFLVER----LDS 247
Query: 240 KGCPLE--------ASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD---------- 281
+ FT D + V+SGS D + +WN +
Sbjct: 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 307
Query: 282 -HPSPVQTIQFNP 293
H V ++
Sbjct: 308 GHKDFVLSVATTQ 320
Score = 95.0 bits (237), Expect = 4e-22
Identities = 59/284 (20%), Positives = 90/284 (31%), Gaps = 90/284 (31%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRT----------VFSKKYGVDLIR 70
I S+DY G L+S S D + I+D G T S G I
Sbjct: 165 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG-KYI- 222
Query: 71 FTHAKQAAIHASTKIDDTVR-------YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI 123
A+ +D VR +L + GH V S+ + D +
Sbjct: 223 ----------AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSV 271
Query: 124 -SGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIK--LYDVRSF 180
SGS D++V+LW+L++ N + S G T V S
Sbjct: 272 VSGSLDRSVKLWNLQNANNKSDSKTPNS---------------GTCEVTYIGHKDFVLS- 315
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAG-- 235
+ + + +YI +S GS + +D +G L L G
Sbjct: 316 --------------------VATTQNDEYI-LS--GSKDRGVLFWDKKSGNPLLMLQGHR 352
Query: 236 -------FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
N +S P+ +GS D + IW +K
Sbjct: 353 NSVISVAVANG------SSLGPEYNVFATGSGDCKARIWKYKKI 390
Score = 91.9 bits (229), Expect = 4e-21
Identities = 33/216 (15%), Positives = 62/216 (28%), Gaps = 60/216 (27%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLI 162
H+K + L + +T + L +P
Sbjct: 11 RANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPRE------------------ 52
Query: 163 FGVGVNSDTIK--LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIR 220
+ V V +KFS DG+Y+ N + +
Sbjct: 53 --IDVELHKSLDHTSVVCC---------------------VKFSNDGEYLATGCNKT-TQ 88
Query: 221 TFDAYNGQCLQTLAGFLNNKGCPLEA---------------SFTPDSKYVISGSTDGRIH 265
+ +G + L+ P F+PD K++ +G+ D I
Sbjct: 89 VYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR 148
Query: 266 IWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
IW+ E V +L H + ++ + P + + S
Sbjct: 149 IWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLVSG 183
Score = 90.0 bits (224), Expect = 2e-20
Identities = 40/278 (14%), Positives = 78/278 (28%), Gaps = 79/278 (28%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ I D + + Y R + V+L +
Sbjct: 15 SKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREI-----DVELHKSL-------- 61
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSP 139
HT V + S D ++ +G +KT +++ +
Sbjct: 62 ------------------------DHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDG 95
Query: 140 NCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWT 199
+ + + + +RS
Sbjct: 96 SLVARLSDDSAANKDPENLNTSSSPSSDLY-------IRS-------------------- 128
Query: 200 GIKFSADGKYILISTNGS---IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI 256
+ FS DGK++ + G+ +IR +D N + + L G ++ + P ++
Sbjct: 129 -VCFSPDGKFL-AT--GAEDRLIRIWDIENRKIVMILQG---HEQDIYSLDYFPSGDKLV 181
Query: 257 SGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPK 294
SGS D + IW+ G L V T+ +P
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTL--SIEDGVTTVAVSPG 217
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori
complex, nuclear pore complex, macromolecular assembly,
MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A
3f3p_A 3ewe_A
Length = 351
Score = 95.4 bits (238), Expect = 2e-22
Identities = 45/325 (13%), Positives = 87/325 (26%), Gaps = 53/325 (16%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG----VDLIRFTHAKQ 76
D + + Y G + +CS D I ++ + T+ + + I + +
Sbjct: 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEY 70
Query: 77 AAIHASTKIDDTVR---------YLSLHDNKYIRYFPGHTKKVNSLCLSPIDD--TFISG 125
I AS D TV+ S + + S+ +P
Sbjct: 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL 130
Query: 126 SYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEG---LIFGVGVNSD------------ 170
D +RL+D P+ ++ + + P F +
Sbjct: 131 GNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL 190
Query: 171 --TIKLYDVRSFDKGPFSNFKFAAEKEC--DW-TGIKFSAD----GKYILISTNGSIIRT 221
I + AA+ I ++ + I IR
Sbjct: 191 EQAIIYQRGKD------GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244
Query: 222 FDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGR----IHIWNAEKGFKVCV 277
F L N + D G +D + + + +
Sbjct: 245 FKITEKLSPLASEESLTN---SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE 301
Query: 278 LDADHPSPVQTIQFNPKFNMMASAC 302
D DH V ++ +N +++SA
Sbjct: 302 HD-DHNGEVWSVSWNLTGTILSSAG 325
Score = 91.2 bits (227), Expect = 5e-21
Identities = 32/279 (11%), Positives = 66/279 (23%), Gaps = 69/279 (24%)
Query: 17 FRENTDKITSIDYSAD--GLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHA 74
++ + S+ ++ GL L D + +YD ++ R+ L
Sbjct: 106 LNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN 165
Query: 75 KQAAIH--------------ASTKIDDTVRYLSLHDNKY--IRYFPGHTKKVNSLCLSP- 117
+ A + ++ + Y D K PGH + S+ +P
Sbjct: 166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 225
Query: 118 ---IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA-AFDPEGLIFGVGVNSDTIK 173
+G D +R++ + S + + + G
Sbjct: 226 IGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQG------- 278
Query: 174 LYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL 233
+D + L
Sbjct: 279 ------------------------------RSDSNTEEK------AELQSNLQVELLSEH 302
Query: 234 AGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
G S+ + S DG++ +W A
Sbjct: 303 DDH---NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338
Score = 73.1 bits (180), Expect = 9e-15
Identities = 27/158 (17%), Positives = 49/158 (31%), Gaps = 17/158 (10%)
Query: 5 DNVIR-------SYKVAKLFRENTDKITSIDYSAD----GLLLISCSEDDQIVIYDCELG 53
+ I VA + I SI ++ L+ + +D +I I+
Sbjct: 191 EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT-- 248
Query: 54 TNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDD----TVRYLSLHDNKYIRYFPGHTKK 109
+ S++ + F ++ + A + D S + + H +
Sbjct: 249 EKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGE 308
Query: 110 VNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHV 147
V S+ + S D VRLW N M V
Sbjct: 309 VWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSV 346
Score = 72.3 bits (178), Expect = 2e-14
Identities = 36/240 (15%), Positives = 74/240 (30%), Gaps = 53/240 (22%)
Query: 105 GHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNCQGIM------HVSGSRPI--AA 155
GH V+ + + + S D+ ++++ L + H I
Sbjct: 9 GHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAH---DSSIVAID 64
Query: 156 F--DPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKECDWTG-------IKFS 204
+ G I S T+KL++ K C +KF+
Sbjct: 65 WASPEYGRIIASA--SYDKTVKLWEEDP---DQEECSGRRWNKLCTLNDSKGSLYSVKFA 119
Query: 205 AD--GKYIL-ISTNGSIIRTFDAYNGQCLQTL--AGFLNNKGCPLEA--------SFTPD 251
G + + +G +R +DA L++ + P S+ P
Sbjct: 120 PAHLGLKLACLGNDGI-LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPS 178
Query: 252 S---KYVISGSTDGRIHIWNAEKGFKVCV--LDADHPSPVQTIQFNP----KFNMMASAC 302
+ + + + I + G L H S +++I + P + ++A+ C
Sbjct: 179 RFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP-GHKSLIRSISWAPSIGRWYQLIATGC 237
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling
protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1
b.69.4.1
Length = 435
Score = 95.1 bits (237), Expect = 4e-22
Identities = 56/300 (18%), Positives = 103/300 (34%), Gaps = 74/300 (24%)
Query: 29 YSADGLLLISCSEDDQIVIYDCELGTNKRT-------VFSKKYGVDLIRFTHAKQAAIHA 81
D ++S D+ I I+D KR V +Y +I
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI-----------I 187
Query: 82 STKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC 141
+ D TVR ++ + + H + V L + + ++ S D+++ +WD+ SP
Sbjct: 188 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTD 245
Query: 142 QGIMHV-SG-SRPI--AAFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKE 195
+ V G + FD + ++ S TIK+++ + E
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDDKYIVSA----SGDRTIKVWNTST--------------CE 287
Query: 196 C--------DW-TGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNNKGCP 243
+++ + + +S GS IR +D G CL+ L G
Sbjct: 288 FVRTLNGHKRGIACLQY--RDRLV-VS--GSSDNTIRLWDIECGACLRVLEGHEELVR-- 340
Query: 244 LEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD--------HPSPVQTIQFNPKF 295
D+K ++SG+ DG+I +W+ H V +QF+
Sbjct: 341 ---CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ 397
Score = 93.2 bits (232), Expect = 2e-21
Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 49/233 (21%)
Query: 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM 145
D+T++ + + R GHT V CL + I+GS D TVR+WD+ + +
Sbjct: 152 DNTIKIWDKNTLECKRILTGHTGSVL--CLQYDERVIITGSSDSTVRVWDVNTGEMLNTL 209
Query: 146 --HVSGSRPIAAFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKECDWTGI 201
H + F+ ++ S +I ++D+ S
Sbjct: 210 IHHCEAVLHL-RFNNGMMVTC----SKDRSIAVWDMAS--------------PTDITLRR 250
Query: 202 KF----------SADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNNKGCPLEASF 248
D KYI +S S I+ ++ + ++TL G A
Sbjct: 251 VLVGHRAAVNVVDFDDKYI-VS--ASGDRTIKVWNTSTCEFVRTLNGHKRGI-----ACL 302
Query: 249 TPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASA 301
+ V+SGS+D I +W+ E G + VL+ H V+ I+F+ K + S
Sbjct: 303 QYRDRLVVSGSSDNTIRLWDIECGACLRVLEG-HEELVRCIRFDNKR--IVSG 352
Score = 81.6 bits (202), Expect = 2e-17
Identities = 49/282 (17%), Positives = 94/282 (33%), Gaps = 62/282 (21%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTN---KRTVFSKKYGVDLIRFTH 73
+ + + + + + ++++CS+D I ++D T+ +R + + V+++ F
Sbjct: 209 LIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-D 265
Query: 74 AKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRL 133
K S D T++ + +++R GH + + L D +SGS D T+RL
Sbjct: 266 DKYIV---SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRL 320
Query: 134 WDLRSPNCQGIM--HVSGSRPIAAFDPEGLIFGVGVNSD-TIKLYDVRSFDKGPFSNFKF 190
WD+ C ++ H R I FD + ++ G D IK++D+
Sbjct: 321 WDIECGACLRVLEGHEELVRCI-RFDNKRIVSG---AYDGKIKVWDLV------------ 364
Query: 191 AAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTP 250
+ CL+TL
Sbjct: 365 --------AA------------------LDPRAPAGTLCLRTLVEHSG-----RVFRLQF 393
Query: 251 DSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFN 292
D ++S S D I IW+ +
Sbjct: 394 DEFQIVSSSHDDTILIWDFLNDPAAQAEPP-RSPSRTYTYIS 434
Score = 72.4 bits (178), Expect = 3e-14
Identities = 34/219 (15%), Positives = 65/219 (29%), Gaps = 86/219 (39%)
Query: 100 IRYFPGHTKKVNS-LCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAF 156
++ ++ CL D +SG D T+++WD + C+ I+ H
Sbjct: 123 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS------- 175
Query: 157 DPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG 216
V D + ++I+ G
Sbjct: 176 --------------------VLC-----------------------LQYDER-VIIT--G 189
Query: 217 SI---IRTFDAYNGQCLQTLAG---------FLNNKGCPLEASFTPDSKYVISGSTDGRI 264
S +R +D G+ L TL F ++ +++ S D I
Sbjct: 190 SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--------------NNGMMVTCSKDRSI 235
Query: 265 HIWNAEKGFKVCVLD--ADHPSPVQTIQFNPKFNMMASA 301
+W+ + + H + V + F+ K + SA
Sbjct: 236 AVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSA 272
Score = 48.5 bits (116), Expect = 2e-06
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 226 NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSP 285
LQ + D + ++SG D I IW+ +L H
Sbjct: 119 GRHSLQRIHCRSETSKGVY--CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGS 175
Query: 286 VQTIQFNPKFNMMASACT 303
V +Q++ + ++ + +
Sbjct: 176 VLCLQYDER--VIITGSS 191
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A
{Saccharomyces cerevisiae}
Length = 313
Score = 92.2 bits (230), Expect = 1e-21
Identities = 50/299 (16%), Positives = 96/299 (32%), Gaps = 70/299 (23%)
Query: 5 DNVIR-----SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQI---VIYDCELGTNK 56
D +R + + + S+ Y ++ LL+ +D I ++
Sbjct: 38 DGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL 97
Query: 57 RT-------VFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN-KYIRYFPGHTK 108
T V S + ++ S D T + + + H
Sbjct: 98 YTLIGHQGNVCSLSFQDGVV-----------ISGSWDKTAK---VWKEGSLVYNLQAHNA 143
Query: 109 KVNS-LCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPI--AAFDPEG-LIFG 164
V +S ++ F++ S DKT++LW + + A +G I
Sbjct: 144 SVWDAKVVSFSENKFLTASADKTIKLWQNDK--VIKTFSGIHNDVVRHLAVVDDGHFISC 201
Query: 165 VGVNSD--TIKLYDVRSFD-KGPF---SNFKFAAEKECDWTGIKFSADGKYILISTNG-S 217
S+ IKL D+ + D + +F + IK +G ++S
Sbjct: 202 ----SNDGLIKLVDMHTGDVLRTYEGHESFVYC---------IKLLPNGD--IVSCGEDR 246
Query: 218 IIRTFDAYNGQCLQTLAGFLNNKGCPLEA----SFTPDSKYVISGSTDGRIHIWNAEKG 272
+R + NG Q + P + + +I GS+D + I++ EK
Sbjct: 247 TVRIWSKENGSLKQVITL-------PAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297
Score = 81.8 bits (203), Expect = 7e-18
Identities = 39/218 (17%), Positives = 69/218 (31%), Gaps = 30/218 (13%)
Query: 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVR---LWDLRSPNCQ 142
D TVR S D +NS+C + + G D + L+ +
Sbjct: 38 DGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL 97
Query: 143 GIM--HVSGSRPIAAFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKECDW 198
+ H + +F +I G S T K++ S A W
Sbjct: 98 YTLIGHQGNVCSL-SFQDGVVISG----SWDKTAKVWKEGSLVY------NLQAHNASVW 146
Query: 199 TGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYV 255
S ++ S I+ + + ++T +G + + D ++
Sbjct: 147 DAKVVSFSENKF-LT--ASADKTIKLWQN--DKVIKTFSG--IHNDVVRHLAVVDDGHFI 199
Query: 256 ISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
S S DG I + + G + + H S V I+ P
Sbjct: 200 -SCSNDGLIKLVDMHTGDVLRTYE-GHESFVYCIKLLP 235
Score = 68.3 bits (168), Expect = 3e-13
Identities = 38/211 (18%), Positives = 57/211 (27%), Gaps = 73/211 (34%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEG 160
GH + V + D S S D TVRLW ++
Sbjct: 14 LKGHDQDVRDVVAVD-DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQG------------ 60
Query: 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS--- 217
+NS + + ++ + + + G
Sbjct: 61 -----FLNS-------------------------------VCYDSEKELL-LF--GGKDT 81
Query: 218 IIRTF---DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFK 274
+I L TL G N SF VISGS D +W
Sbjct: 82 MINGVPLFATSGEDPLYTLIGHQGNVCS---LSFQDG--VVISGSWDKTAKVWKEGS--L 134
Query: 275 VCVLDADHPSPV---QTIQFNPKFNMMASAC 302
V L A H + V + + F+ N +A
Sbjct: 135 VYNLQA-HNASVWDAKVVSFSE--NKFLTAS 162
Score = 40.2 bits (95), Expect = 5e-04
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 223 DAYNG-QCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD 281
D + G Q TL G + + DSK V S S DG + +W+ + + V+
Sbjct: 3 DPFTGYQLSATLKG---HDQDVRDVVAVDDSK-VASVSRDGTVRLWSKDDQWLGTVVY-T 57
Query: 282 HPSPVQTIQFNPKFNMMASA 301
+ ++ ++ + ++
Sbjct: 58 GQGFLNSVCYDSEKELLLFG 77
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat,
biosynthetic prote structural genomics, structural
genomics consortium; 1.70A {Homo sapiens}
Length = 345
Score = 92.6 bits (231), Expect = 1e-21
Identities = 50/317 (15%), Positives = 91/317 (28%), Gaps = 98/317 (30%)
Query: 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHA 81
+ + ++ G LL SC D +I I+ E +
Sbjct: 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKS---------------------- 54
Query: 82 STKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC 141
GH + V + SP + S S+D T +W +
Sbjct: 55 -------------------VLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF 95
Query: 142 QGIMHVSG-SRPI--AAFDPEG--LIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEK 194
+ + + G + A+ P G L S ++ +++V E
Sbjct: 96 ECVTTLEGHENEVKSVAWAPSGNLLATC----SRDKSVWVWEVDE-----------EDEY 140
Query: 195 EC--------DW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQ--CLQTLAGFLNNK 240
EC + + + +L S S ++ + C TL G ++
Sbjct: 141 ECVSVLNSHTQDVKHVVWHPSQE-LLAS--ASYDDTVKLYREEEDDWVCCATLEG---HE 194
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNA---------------EKGFKVCVLDADHPSP 285
+F P + + S S D + IW +C L H
Sbjct: 195 STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT 254
Query: 286 VQTIQFNPKFNMMASAC 302
+ I + +A+AC
Sbjct: 255 IYDIAWCQLTGALATAC 271
Score = 91.1 bits (227), Expect = 5e-21
Identities = 49/294 (16%), Positives = 91/294 (30%), Gaps = 65/294 (22%)
Query: 5 DNVIR-------SYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKR 57
D ++ + +++ S+ ++ G LL +CS D + +++ +
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 58 TVFSKK---YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFP--GHTKKVNS 112
V V + + +++ + AS DDTV+ ++ ++ GH V S
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQE--LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS 199
Query: 113 LCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEG--LIFGVGVNSD 170
L P S S D+TVR+W P + DP + G +S
Sbjct: 200 LAFDPSGQRLASCSDDRTVRIWRQYLPG------NEQGVACSGSDPSWKCICTLSGFHSR 253
Query: 171 TIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS---IIRTFDAYNG 227
TI I + + + IR F
Sbjct: 254 TI--------------------------YDIAWCQLTGAL-AT--ACGDDAIRVFQEDPN 284
Query: 228 QCLQTLAGFLNNKGCPLEA--------SFTP-DSKYVISGSTDGRIHIWNAEKG 272
Q L +A ++ P + + S S DG + W ++
Sbjct: 285 SDPQQPTFSLTAH--LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336
Score = 84.2 bits (209), Expect = 1e-18
Identities = 37/223 (16%), Positives = 72/223 (32%), Gaps = 45/223 (20%)
Query: 103 FPGHTK-KVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSG--SRPI--AAFD 157
P H + L +P S D+ +R+W + +S R + A+
Sbjct: 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS 70
Query: 158 PEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKEC--------DW-TGIKFSAD 206
P G S T ++ + EC + + ++
Sbjct: 71 PCGNYLASA--SFDATTCIWKKNQ------------DDFECVTTLEGHENEVKSVAWAPS 116
Query: 207 GKYILISTNGSI---IRTFDAYNG---QCLQTLAGFLNNKGCPLEASFTPDSKYVISGST 260
G L + S + ++ +C+ L + + P + + S S
Sbjct: 117 GNL-LAT--CSRDKSVWVWEVDEEDEYECVSVLNS---HTQDVKHVVWHPSQELLASASY 170
Query: 261 DGRIHIWNAEKGFKVCV--LDADHPSPVQTIQFNPKFNMMASA 301
D + ++ E+ VC L+ H S V ++ F+P +AS
Sbjct: 171 DDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQRLASC 212
Score = 72.6 bits (179), Expect = 2e-14
Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 36/130 (27%)
Query: 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFT 72
+ L ++ I I + L + DD I ++ + ++ +
Sbjct: 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQ-------------- 289
Query: 73 HAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTV 131
+ H++ VN + +P + + S S D V
Sbjct: 290 ---------------------PTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEV 328
Query: 132 RLWDLRSPNC 141
W + P
Sbjct: 329 AFWKYQRPEG 338
Score = 51.4 bits (124), Expect = 1e-07
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 227 GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVC--VLDADHPS 284
L + + ++ P + S D RI IW E +C VL H
Sbjct: 5 LVLLGRVPA--HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQR 62
Query: 285 PVQTIQFNPKFNMMASA 301
V+ + ++P N +ASA
Sbjct: 63 TVRKVAWSPCGNYLASA 79
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A
{Saccharomyces cerevisiae}
Length = 330
Score = 92.6 bits (231), Expect = 1e-21
Identities = 39/223 (17%), Positives = 71/223 (31%), Gaps = 39/223 (17%)
Query: 103 FPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM------HVSGSRPI--A 154
+ +K+ S S +GS D+ ++L ++ + I H + I
Sbjct: 10 LKLYKEKIWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAH---KKAIRSV 64
Query: 155 AFDPEGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKE--CDW-TGIKFSADGKY 209
A+ P + G S T+ ++ A E + G+ +S DG Y
Sbjct: 65 AWRPHTSLLAAG--SFDSTVSIWAKEE-SADRTFEMDLLAIIEGHENEVKGVAWSNDGYY 121
Query: 210 ILISTNGSI---IRTFDAYNGQ----CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG 262
L + S + ++ C+ L + + P + S S D
Sbjct: 122 -LAT--CSRDKSVWIWETDESGEEYECISVLQE---HSQDVKHVIWHPSEALLASSSYDD 175
Query: 263 RIHIWNAEKGFKVCV--LDADHPSPVQTIQFNP--KFNMMASA 301
+ IW CV L+ H V + F+ + S
Sbjct: 176 TVRIWKDYDDDWECVAVLNG-HEGTVWSSDFDKTEGVFRLCSG 217
Score = 88.0 bits (219), Expect = 5e-20
Identities = 46/280 (16%), Positives = 96/280 (34%), Gaps = 36/280 (12%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHA-KQAAI 79
I S+ + LL + S D + I+ E + F + + K A
Sbjct: 58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE--ESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 80 H------ASTKIDDTVR----YLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDK 129
A+ D +V S + + I H++ V + P + S SYD
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD 175
Query: 130 TVRLWDLRSPNCQGIMHVSG-SRPI--AAFDPEGLIFGVGVNSD--TIKLYDVRSFDKGP 184
TVR+W + + + ++G + + FD +F + SD T++++ D+
Sbjct: 176 TVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD 235
Query: 185 FSNFKFAAEKEC---DW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQC----LQTL 233
+ A + + +G + S ++ ++ +G+ + L
Sbjct: 236 QQEWVCEAILPDVHKRQVYNVAWGFNGL--IAS--VGADGVLAVYEEVDGEWKVFAKRAL 291
Query: 234 AGFLNNKGCPLEASFTPD-SKYVISGSTDGRIHIWNAEKG 272
+ + + +G DG ++ W+ EK
Sbjct: 292 CHGVYEINVV--KWLELNGKTILATGGDDGIVNFWSLEKA 329
Score = 81.1 bits (201), Expect = 2e-17
Identities = 45/310 (14%), Positives = 89/310 (28%), Gaps = 100/310 (32%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+KI S D+S +L + S D +I + +
Sbjct: 14 KEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTL----------------------- 48
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSP 139
+ H K + S+ P + + +GS+D TV +W
Sbjct: 49 -----------------IDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEE- 89
Query: 140 NCQGIMHVSGSRPIAAFD-PEGLIFGVGVNSD-----------TIKLYDVRSFDKGPFSN 187
+A + E + GV ++D ++ +++
Sbjct: 90 ---SADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG------ 140
Query: 188 FKFAAEKEC--------DW-TGIKFSADGKYILISTNGSI---IRTFDAYNG--QCLQTL 233
E EC + + +L S S +R + Y+ +C+ L
Sbjct: 141 ----EEYECISVLQEHSQDVKHVIWHPSEA-LLAS--SSYDDTVRIWKDYDDDWECVAVL 193
Query: 234 AGFLNNKGCPLEASFTPDSK--YVISGSTDGRIHIWNA--------EKGFKVCVLDADHP 283
G ++G + F + SGS D + +W ++ +L H
Sbjct: 194 NG---HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK 250
Query: 284 SPVQTIQFNP 293
V + +
Sbjct: 251 RQVYNVAWGF 260
Score = 44.9 bits (107), Expect = 2e-05
Identities = 12/79 (15%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 226 NGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDAD---H 282
+ +++L K F+ + +GSTD +I + + + + D H
Sbjct: 3 SINLIKSLKL---YKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAH 57
Query: 283 PSPVQTIQFNPKFNMMASA 301
++++ + P +++A+
Sbjct: 58 KKAIRSVAWRPHTSLLAAG 76
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
3gfc_A 3cfs_B 3cfv_B
Length = 430
Score = 92.9 bits (231), Expect = 3e-21
Identities = 49/315 (15%), Positives = 104/315 (33%), Gaps = 57/315 (18%)
Query: 21 TDKITSIDYS-ADGLLLISCSEDDQIVIYDCELGTNKRTVFSKK-------------YGV 66
++ Y + ++ + + ++++D +K + YG+
Sbjct: 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGL 187
Query: 67 DLIRFTHAKQAAIHASTKIDDTVRY-------LSLHDNKYIRYFPGHTKKVNSLCLSPID 119
+ + S D T+ F GHT V + +
Sbjct: 188 S---WNPNLNGYL-LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH 243
Query: 120 DT-FISGSYDKTVRLWDLRSPNCQGIMHVSG--SRPI--AAFDPEG-LIFGVGVNSDTIK 173
++ F S + D+ + +WD R+ N H + + +F+P I G T+
Sbjct: 244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 303
Query: 174 LYDVRSFDKGPFSNFKFAAEKECDW-TGIKFSADGKYILISTNGS---IIRTFDAYNGQC 229
L+D+R+ K +F+ D +++S + IL S + +D
Sbjct: 304 LWDLRNL-KLKLHSFESHK----DEIFQVQWSPHNETILAS--SGTDRRLHVWDLSKIGE 356
Query: 230 LQTLAGFLNNKGCPL-----------EASFTPDSKYVI-SGSTDGRIHIWNAEKGFKVCV 277
Q+ + L + S+ P+ ++I S S D + +W +
Sbjct: 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV---Y 413
Query: 278 LDADHPSPVQTIQFN 292
D + P ++ N
Sbjct: 414 NDEEPEIPASELETN 428
Score = 72.5 bits (178), Expect = 3e-14
Identities = 36/226 (15%), Positives = 82/226 (36%), Gaps = 38/226 (16%)
Query: 105 GHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDP-EGLI 162
H +VN P + I + + V ++D + + +P +
Sbjct: 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDY-TKHPSKPEPSGECQPDLRLRGHQKEG 184
Query: 163 FGVGVNSD------------TIKLYDVRSFDKGPFSNFKFAAEKECDWTG-------IKF 203
+G+ N + TI L+D+ + K + + +TG + +
Sbjct: 185 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI-----DAKNIFTGHTAVVEDVAW 239
Query: 204 SADGKYILIST-NGSIIRTFDAYN---GQCLQTLAGFLNNKGCPLEASFTPDSKYVI-SG 258
+ + S + + +D N + T+ C SF P S++++ +G
Sbjct: 240 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC---LSFNPYSEFILATG 296
Query: 259 STDGRIHIWNAEKG-FKVCVLDADHPSPVQTIQFNPKF-NMMASAC 302
S D + +W+ K+ ++ H + +Q++P ++AS+
Sbjct: 297 SADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSG 341
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 92.5 bits (229), Expect = 4e-21
Identities = 41/310 (13%), Positives = 91/310 (29%), Gaps = 30/310 (9%)
Query: 24 ITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS---KKYGVDLIRFTHAKQAAIH 80
+ ++ S DG L+ + + I+ + + + + R T AK+
Sbjct: 7 LQNLLTSRDGSLVFA-IIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQ 65
Query: 81 ASTKIDDTVRYLSLHDNKYIRY----------FPGHTKKVNSLCLSPIDDTFI-SGSYDK 129
+S ++ + S + R P + +L L+ + I DK
Sbjct: 66 SSENENENKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDK 125
Query: 130 TVRLWDLRSPNCQGI----MHVSGSRPIA-AFDPEGLIFGVGVNSDTIKLYDVRSFDKGP 184
++ ++D+ + + RP A + + + + D+ S +
Sbjct: 126 SLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEK 185
Query: 185 FSNFKFAAEKECDW-TGIKFSADG---KYILISTNGSIIRTFDAYNGQCLQTLAGFLNNK 240
F+ T + D ++I+ S I+ + +K
Sbjct: 186 FTQEPI--LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW--LFGHK 241
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA-DHPSPVQTIQFNPKFNMMA 299
D ++S D +I W+ + G + D P Q
Sbjct: 242 HFVSSICCGKDY-LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQN 300
Query: 300 SACTNLAFWI 309
+ F +
Sbjct: 301 ENNDIIEFAV 310
Score = 79.4 bits (195), Expect = 1e-16
Identities = 29/270 (10%), Positives = 69/270 (25%), Gaps = 30/270 (11%)
Query: 18 RENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG----VDLIRFTH 73
+ + +I + D +I + + D ++ G + +
Sbjct: 146 FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK 205
Query: 74 AKQAAIH-ASTKIDDTVRYLSLHDNKYIR-YFPGHTKKVNSLCLSPIDDTFISGSYDKTV 131
++ D+ ++ + + GH V+S+C D +S D +
Sbjct: 206 DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGK-DYLLLSAGGDDKI 264
Query: 132 RLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFA 191
WD ++ + D ++ I + V
Sbjct: 265 FAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK------------ 312
Query: 192 AEKECDWTGIKFSADGKYILISTNGS-IIRTFDAYNGQCLQ-TLAGFLNNKGCPLEASFT 249
I S + ++ + I + Q L + + S
Sbjct: 313 ---------IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAH 363
Query: 250 PDSKYVISGSTDGRIHIWNAEKGFKVCVLD 279
D V + + N K + + +
Sbjct: 364 NDEFQVTLDNKESSGVQKNFAKFIEYNLNE 393
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31;
beta propeller, alpha solenoid; 2.35A {Saccharomyces
cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Length = 297
Score = 90.4 bits (225), Expect = 5e-21
Identities = 42/310 (13%), Positives = 85/310 (27%), Gaps = 73/310 (23%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ I G + +CS D I I++ E T
Sbjct: 9 NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-------------------------- 42
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD--TFISGSYDKTVRLWDLRS 138
+K I GH V + + S SYD V +W +
Sbjct: 43 ----------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86
Query: 139 PNCQGIM----HVSGSRPIA-AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFK---- 189
I H + + A G + V + + + + +
Sbjct: 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146
Query: 190 ------FAAEKECDWTGIKFSADGKYILISTNGSIIR----TFDAYNGQCLQTLAGFLNN 239
+A + + + + + ++++ DA TL G +
Sbjct: 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG---H 203
Query: 240 KGCPLEASFTPD---SKYVISGSTDGRIHIWNAEKG----FKVCVLDADHPSPVQTIQFN 292
+ +++P Y+ S S D IW + K + + P + ++
Sbjct: 204 SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS 263
Query: 293 PKFNMMASAC 302
N++A +
Sbjct: 264 LSGNVLALSG 273
Score = 63.4 bits (155), Expect = 1e-11
Identities = 25/219 (11%), Positives = 68/219 (31%), Gaps = 41/219 (18%)
Query: 105 GHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPN--CQGIM--HVSGSRPIA-AFDP 158
H + ++ + + + S DKT++++++ + H + A
Sbjct: 7 AHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 159 EGLIFGVGVNSD--TIKLYDV---RSFDKGPFSNFKFAAEKECDW-TGIKFSAD--GKYI 210
G I S + ++ R + ++++ G +
Sbjct: 66 FGTILASC--SYDGKVMIWKEENGRWSQIAVHAVHS-------ASVNSVQWAPHEYGPML 116
Query: 211 LISTNGSIIRTFDAYNGQCLQ--TLAGFLN----------NKGCPLEASFTPDSKYVISG 258
L++++ + + + E + T +S+ ++G
Sbjct: 117 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 176
Query: 259 STDGRIHIW----NAEKGFKVCVLDADHPSPVQTIQFNP 293
D + IW +A+ L+ H V+ + ++P
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTLEG-HSDWVRDVAWSP 214
Score = 51.8 bits (125), Expect = 7e-08
Identities = 16/121 (13%), Positives = 34/121 (28%), Gaps = 10/121 (8%)
Query: 25 TSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV-DLIR---FTHAKQAAIH 80
+ + + ++ D+ + I+ + S G D +R ++ +
Sbjct: 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221
Query: 81 -ASTKIDDTVRYLSLHDN-----KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLW 134
AS D T + + K + + S + D V LW
Sbjct: 222 MASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Query: 135 D 135
Sbjct: 282 K 282
Score = 31.0 bits (71), Expect = 0.43
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELG 53
D + +S G +L D+++ ++ L
Sbjct: 254 PDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics,
structural genomic consortium, SGC, apoptosis,
transcription; 1.95A {Homo sapiens}
Length = 357
Score = 88.6 bits (220), Expect = 5e-20
Identities = 38/243 (15%), Positives = 72/243 (29%), Gaps = 33/243 (13%)
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKK----VNSLCLSPIDDTFISGSYDKTVR 132
+ + ++ + K S +G + +
Sbjct: 34 VTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH 93
Query: 133 LWDLRSPNCQG---------IMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKG 183
+W+L +P I + G + G T+K++D R D
Sbjct: 94 IWNLEAPEMPVYSVKGHKEIINAIDGIGGL-GIGEGAPEIVTGSRDGTVKVWDPRQKDDP 152
Query: 184 PFSNFKFAAEKECD-W---TGIKFSADGKYILI-STNGSIIRTFDAYNGQCLQTLAGFLN 238
+ E + D W G ++ + + + NG I+ FD N N
Sbjct: 153 VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD-IKLFDLRNMALRWE----TN 207
Query: 239 NKGCPLEASFTPDS---KYVISGSTDGRIHIWNAE-----KGFKVCVLDADHPSPVQTIQ 290
K F +++ S +G+ H+++ KGF A H S V ++
Sbjct: 208 IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA-HKSTVWQVR 266
Query: 291 FNP 293
P
Sbjct: 267 HLP 269
Score = 85.5 bits (212), Expect = 5e-19
Identities = 35/294 (11%), Positives = 78/294 (26%), Gaps = 55/294 (18%)
Query: 24 ITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF----SKKYGVDLIRFTHAKQAAI 79
T S L + + I++ E +D I I
Sbjct: 71 GTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIG-----GLGI 125
Query: 80 H------ASTKIDDTVR----YLSLHDNKYIRYFPGHTKK-----VNSLCLSPIDDTFIS 124
+ D TV+ + G K+ + + +
Sbjct: 126 GEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCA 185
Query: 125 GSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFG---VGVNSDTIKLYDVRSFD 181
G + ++L+DLR+ + ++ FD + + ++D+R+
Sbjct: 186 GYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH 245
Query: 182 KGPFSNFKFAAEKE-CDW-TGIKFSADGKYILIS--------------------TNGSII 219
P F +EK ++ + + ++ + I
Sbjct: 246 --PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGI 303
Query: 220 RTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVI-SGSTDGRIHIWNAEKG 272
A + LQ + + ++PD + + S D + + K
Sbjct: 304 EMGVAGSVSLLQNVTL---STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354
Score = 75.5 bits (186), Expect = 1e-15
Identities = 20/213 (9%), Positives = 58/213 (27%), Gaps = 58/213 (27%)
Query: 105 GHTKKVNSLCLSPIDDTFIS----GSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEG 160
G V P F++ ++L++++ + + + + ++PI
Sbjct: 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKC----- 70
Query: 161 LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIR 220
T S +Y+ G +
Sbjct: 71 -------------------------------------GTFGATSLQQRYLATGDFGGNLH 93
Query: 221 TFDAYNGQC-LQTLAG---FLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVC 276
++ + + ++ G +N + +++GS DG + +W+ +
Sbjct: 94 IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPV 153
Query: 277 VL--------DADHPSPVQTIQFNPKFNMMASA 301
D + +N + ++ +
Sbjct: 154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG 186
Score = 60.1 bits (146), Expect = 2e-10
Identities = 16/127 (12%), Positives = 38/127 (29%), Gaps = 29/127 (22%)
Query: 17 FRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAK 75
+ + + + + L ++ + ++ E
Sbjct: 255 EKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQ-------------------- 294
Query: 76 QAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI--SGSYDKTVRL 133
S K + + ++ T+ ++SL SP D + S+D+TVR+
Sbjct: 295 -----RSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP-DKRGLCVCSSFDQTVRV 348
Query: 134 WDLRSPN 140
+ N
Sbjct: 349 LIVTKLN 355
>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Length = 379
Score = 88.5 bits (220), Expect = 5e-20
Identities = 41/310 (13%), Positives = 85/310 (27%), Gaps = 73/310 (23%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ I G L +CS D I I++ E T
Sbjct: 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-------------------------- 44
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD--TFISGSYDKTVRLWDLRS 138
+K I GH V + + S SYD V +W +
Sbjct: 45 ----------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88
Query: 139 PNCQGIM----HVSGSRPIA-AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFK---- 189
I H + + A G + V + + + + +
Sbjct: 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 148
Query: 190 ------FAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYN----GQCLQTLAGFLNN 239
+A + + + + + ++++ + + TL G +
Sbjct: 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG---H 205
Query: 240 KGCPLEASFTPD---SKYVISGSTDGRIHIWNAEKG----FKVCVLDADHPSPVQTIQFN 292
+ +++P Y+ S S D IW + K + + P + ++
Sbjct: 206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS 265
Query: 293 PKFNMMASAC 302
N++A +
Sbjct: 266 LSGNVLALSG 275
Score = 68.1 bits (167), Expect = 5e-13
Identities = 30/315 (9%), Positives = 75/315 (23%), Gaps = 80/315 (25%)
Query: 17 FRENTDKITSIDYSAD--GLLLISCSEDDQIVIYDCELGTNKRTV-------------FS 61
++ + S+ ++ G LL+ S D ++ + + + + ++
Sbjct: 97 HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 156
Query: 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVR----YLSLHDNKYIRYFPGHTKKVNSLCLSP 117
+ K++ + D+ V+ GH+ V + SP
Sbjct: 157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216
Query: 118 ---IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKL 174
+ S S D+T +W + + E F +
Sbjct: 217 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE--------EK--FPDVLWR----- 261
Query: 175 YDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDA-YNGQCLQTL 233
+S G + +S + + + G+
Sbjct: 262 --------------------------ASWSLSGNVLALSGGDNKVTLWKENLEGKWEPA- 294
Query: 234 AGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
SG ++ ++ +L + +
Sbjct: 295 --------------GEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFS-ECNDEIDNAKLI 339
Query: 294 KFNMMASACTNLAFW 308
+A A +
Sbjct: 340 MKERRFTASYTFAKF 354
Score = 63.9 bits (156), Expect = 1e-11
Identities = 27/218 (12%), Positives = 69/218 (31%), Gaps = 39/218 (17%)
Query: 105 GHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNCQGIM----HVSGSRPIA-AFDP 158
H + ++ L + + S DKT++++++ + I H + A
Sbjct: 9 AHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 67
Query: 159 EGLIFGVGVNSD--TIKLYDV---RSFDKGPFSNFKFAAEKECDW-TGIKFSAD--GKYI 210
G I S + ++ R + ++++ G +
Sbjct: 68 FGTILASC--SYDGKVLIWKEENGRWSQIAVHAVHS-------ASVNSVQWAPHEYGPLL 118
Query: 211 LISTNGSIIRTFDAYNGQCLQ--TLAGFLN----------NKGCPLEASFTPDSKYVISG 258
L++++ + + + E + T +S+ ++G
Sbjct: 119 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 178
Query: 259 STDGRIHIWNAEKGFKVCVLDA---DHPSPVQTIQFNP 293
D + IW + VL++ H V+ + ++P
Sbjct: 179 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216
Score = 48.5 bits (116), Expect = 1e-06
Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 36/180 (20%)
Query: 5 DNVIR---------SYKVAKLFRENTDKITSIDYSADGL---LLISCSEDDQIVIYDCEL 52
DN+++ +Y + ++D + + +S L L S S+D +I+ +
Sbjct: 181 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240
Query: 53 GTNKRTVFSKKYGVDLIRFTHA-------KQAAIHASTKIDDTVRYLSLHDNKYIRYFPG 105
KK + +F + A + D+ V L G
Sbjct: 241 EQGP----WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT---LWKENL----EG 289
Query: 106 HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM--HVSGSRPIAAFDPEGLIF 163
+ + SG T + +D N ++ + A + F
Sbjct: 290 KWEPAGEVHQGGGG----SGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRF 345
Score = 43.1 bits (102), Expect = 7e-05
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 6/69 (8%)
Query: 227 GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCV--LDADHPS 284
G + + +A K + + S+D I I+ E + L H
Sbjct: 1 GSMVVIANA---HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG-HEG 56
Query: 285 PVQTIQFNP 293
PV + +
Sbjct: 57 PVWRVDWAH 65
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
complex; 2.40A {Saccharomyces cerevisiae}
Length = 902
Score = 89.9 bits (222), Expect = 6e-20
Identities = 28/296 (9%), Positives = 75/296 (25%), Gaps = 68/296 (22%)
Query: 9 RSYKVAKLFRE-NTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVD 67
+ + +A+ + + K + + LL + ++ IY
Sbjct: 4 KIFSLAETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYG------------------ 45
Query: 68 LIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSY 127
V + + + + + +
Sbjct: 46 ------------------QQQVEVVIKLE---------DRSAIKEMRFVK-GIYLVVINA 77
Query: 128 DKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSN 187
TV + L S + V G D +G+ + ++ +YD+ F
Sbjct: 78 KDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL 137
Query: 188 FKFAAEKEC------DWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL-------- 233
I+++ ++ + + T+ + Q+
Sbjct: 138 DNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFA 197
Query: 234 -------AGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADH 282
+++ + P+S ++I+ D + W+A G +
Sbjct: 198 PGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFE 253
Score = 69.1 bits (168), Expect = 5e-13
Identities = 27/225 (12%), Positives = 65/225 (28%), Gaps = 21/225 (9%)
Query: 97 NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA-- 154
+ +Y G + K + + + V ++ + ++ + I
Sbjct: 9 AETNKY--GMSSKPIAAAFDFTQNLLAIATVTGEVHIYG--QQQVEVVIKLEDRSAIKEM 64
Query: 155 AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST 214
F + V DT+ + + S + + + I A ++LI
Sbjct: 65 RFVKGIYLV-VINAKDTVYVLSLYS--QKVLTTVFVPGKITS----IDTDASLDWMLIGL 117
Query: 215 NGSIIRTFDAYNGQC-------LQTLAGFLNNKGCPLEA-SFTPDSKYVISGSTDGRIHI 266
+ +D Q LQ + F + P+ + + P + S +
Sbjct: 118 QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLT 177
Query: 267 WNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFWIPT 311
++ + + P F+ K N + + + P
Sbjct: 178 YSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN 222
Score = 59.5 bits (143), Expect = 6e-10
Identities = 35/322 (10%), Positives = 83/322 (25%), Gaps = 50/322 (15%)
Query: 19 ENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAA 78
E+ I + + L + + D + + TVF + I +
Sbjct: 56 EDRSAIKEMRFVKGIYL-VVINAKDTVYVLSLYSQKVLTTVFVPGK-ITSIDTDASLDWM 113
Query: 79 IHASTKIDDTVR----------YLSLHDNKYIRYFP-GHTKKVNSLCLSPIDDTFISGSY 127
+ + ++ L + + +FP + S+ +P D + SY
Sbjct: 114 LIGLQ--NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY 171
Query: 128 DKTVRLWDLR---------------SPNCQGIMHVSGSRPI----AAFDPEGLIFGVGVN 168
+ + L +P + R + + P L
Sbjct: 172 EYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE 231
Query: 169 SDTIKLYDVRSFDK-GPFSNFKFAAEKECDWTGIKFSADGKYI-----LISTNGSIIRTF 222
+++ +D S + F+ S + I + N
Sbjct: 232 DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLL 291
Query: 223 DAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADH 282
++ + +Y I+ + + N ++ +
Sbjct: 292 ISHKSI-------SRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQM---KIFPLPT 341
Query: 283 PSPVQTIQFNPKFNMMASACTN 304
P+ I P+ + + C N
Sbjct: 342 NVPIVNILPIPRQSPYFAGCHN 363
Score = 53.0 bits (126), Expect = 7e-08
Identities = 36/295 (12%), Positives = 84/295 (28%), Gaps = 36/295 (12%)
Query: 32 DGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRY 91
+ L++ + +I G T + + +L + A++ +
Sbjct: 363 NPGLILLILGNGEIETMLYPSGI--FTDKASLFPQNL-SWLRPLATTSMAAS--VPNKLW 417
Query: 92 LSLHDNKYIRYFP--GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH--- 146
L + + G + + FI+G + +VR++D + Q
Sbjct: 418 LGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEV 477
Query: 147 -----VSGSRPIA----AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECD 197
++ ++ +A +F E L V + + + L+ N + + E +
Sbjct: 478 NLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMN 537
Query: 198 WTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVIS 257
+ + + + Q NKG A + +V
Sbjct: 538 FRRFSLNNTNGVL-----VDVRDRAPTGVRQGFMPSTAVHANKG-KTSAINNSNIGFVGI 591
Query: 258 GSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNLAFWIPTY 312
G + + D P+ + ++ T + F I Y
Sbjct: 592 AYAAGSLMLI-----------DRRGPAIIYMENIREISGAQSACVTCIEFVIMEY 635
Score = 44.5 bits (104), Expect = 4e-05
Identities = 20/140 (14%), Positives = 44/140 (31%), Gaps = 5/140 (3%)
Query: 3 LTDNVIRSYKVAKLF-RENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFS 61
+ DN +++ + + I ++A+ L L E +V++ E+
Sbjct: 469 IQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENR 528
Query: 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRY-LSLHDN-KYIRYFPGHTKKVNSLCLSPID 119
+ G + F + +D R + + K +++ S I
Sbjct: 529 PESGDLEMNFRRFSLNNTNGVL-VDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI- 586
Query: 120 DTFISGSYDKTVRLWDLRSP 139
++ L D R P
Sbjct: 587 GFVGIAYAAGSLMLIDRRGP 606
Score = 31.4 bits (70), Expect = 0.56
Identities = 38/303 (12%), Positives = 77/303 (25%), Gaps = 60/303 (19%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ G I+ + + IYD G + +
Sbjct: 435 VRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEV----------------- 477
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
+ R L+ V+ + + V L+
Sbjct: 478 ------NLSRTLN----------KAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ 521
Query: 141 CQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRS-FDKGPFSNFKFAAEKECDW- 198
+ + S D E +N+ L DVR G F + +
Sbjct: 522 FYSVENRPESG-----DLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG 576
Query: 199 --TGIKFSADGKYILISTNGSI----IRTFDAYNGQCLQTLAGFLNNKGCPLEASF---- 248
+ I S G + GS+ R + ++ ++G + +E
Sbjct: 577 KTSAINNSNIGFVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYG 636
Query: 249 --TPDSKYVISGSTDGRIHIW----NAEKGFKVC---VLDADHPSPVQTIQ-FNPKFNMM 298
S ++ G+ G + + + F V + + P+ I F+ +
Sbjct: 637 DDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSS 696
Query: 299 ASA 301
A
Sbjct: 697 CLA 699
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum, ER-golgi transport, membrane,
mRNA transport; 4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 86.2 bits (213), Expect = 9e-19
Identities = 45/310 (14%), Positives = 88/310 (28%), Gaps = 73/310 (23%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
+ I G L +CS D I I++ E T
Sbjct: 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-------------------------- 42
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLS-PIDDTFI-SGSYDKTVRLWDLRS 138
+K I GH V + + P T + S SYD V +W +
Sbjct: 43 ----------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86
Query: 139 PNCQGIM----HVSGSRPIA-AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFK---- 189
I H + + A G + V + + + + +
Sbjct: 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146
Query: 190 ------FAAEKECDWTGIKFSADGKYILISTNGSIIR----TFDAYNGQCLQTLAGFLNN 239
+A + + + + + ++++ DA TL G +
Sbjct: 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG---H 203
Query: 240 KGCPLEASFTPD---SKYVISGSTDGRIHIWNAEKG----FKVCVLDADHPSPVQTIQFN 292
+ +++P Y+ S S D IW + K + + P + ++
Sbjct: 204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS 263
Query: 293 PKFNMMASAC 302
N++A +
Sbjct: 264 LSGNVLALSG 273
Score = 65.0 bits (158), Expect = 9e-12
Identities = 27/215 (12%), Positives = 72/215 (33%), Gaps = 33/215 (15%)
Query: 105 GHTKKVNSLCLSPIDDTFI-SGSYDKTVRLWDLRSPNCQGIMHVSG-SRPI----AAFDP 158
H + ++ L + + S DKT++++++ + I ++G P+ A
Sbjct: 7 AHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 159 EGLIFGVGVNSD--TIKLYDVRSFDKGPFSNFKFAAEKECDW-TGIKFSAD--GKYILIS 213
G I S + ++ + + ++++ G +L++
Sbjct: 66 FGTILASC--SYDGKVLIWKEENGRWSQIAVHAV----HSASVNSVQWAPHEYGPLLLVA 119
Query: 214 TNGSIIRTFDAYNGQCLQ--TLAGFLN----------NKGCPLEASFTPDSKYVISGSTD 261
++ + + + E + T +S+ ++G D
Sbjct: 120 SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 179
Query: 262 GRIHIWNAEKGFKVCVLDA---DHPSPVQTIQFNP 293
+ IW + VL++ H V+ + ++P
Sbjct: 180 NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Score = 64.6 bits (157), Expect = 1e-11
Identities = 47/311 (15%), Positives = 89/311 (28%), Gaps = 79/311 (25%)
Query: 29 YSADGLLLISCSEDDQIVIYDCELGT-NKRTVFSK-KYGVDLIRFTHAKQAAIHASTKID 86
+ G +L SCS D +++I+ E G ++ V + V+ +++ + + D
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Query: 87 DTVRYLSLHDNKYIRYFP--GHTKKVNSLCLSPIDD-------------TFISGSYDKTV 131
V + +N H VNS +P F++G D V
Sbjct: 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182
Query: 132 RLWDLRSPNCQGIM------HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPF 185
++W S ++ H SD VR
Sbjct: 183 KIWKYNSDAQTYVLESTLEGH----------------------SDW-----VRD------ 209
Query: 186 SNFKFAAEKECDWTGIKFSAD---GKYILI-STNGSI-IRTFDAYNGQCLQTLAGFLNNK 240
+ +S Y+ S + + I T D G +TL
Sbjct: 210 ---------------VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254
Query: 241 GCPLEASFTPDSKYVISGSTDGRIHIWNAE-KGFKVCVLDAD--HPSPVQTIQFNPKFNM 297
AS++ + D ++ +W +G + + +F+
Sbjct: 255 DVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQGGGGSGGGGATSKEFDG 314
Query: 298 MASACTNLAFW 308
+L F
Sbjct: 315 PCQNEIDLLFS 325
Score = 62.7 bits (152), Expect = 6e-11
Identities = 33/330 (10%), Positives = 81/330 (24%), Gaps = 77/330 (23%)
Query: 17 FRENTDKITSIDYSAD--GLLLISCSEDDQIVIYDCELGTNKRTV-------------FS 61
++ + S+ ++ G LL+ S D ++ + + + + ++
Sbjct: 95 HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 154
Query: 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVR----YLSLHDNKYIRYFPGHTKKVNSLCLSP 117
+ K++ + D+ V+ GH+ V + SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 118 ---IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKL 174
+ S S D+T +W + + E F +
Sbjct: 215 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE--------EK--FPDVLWR----- 259
Query: 175 YDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLA 234
+S G + +S + + +
Sbjct: 260 --------------------------ASWSLSGNVLALSGGDNKVTLWKE---------- 283
Query: 235 GFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPK 294
N E + SG ++ ++ +L ++ + + K
Sbjct: 284 ----NLEGKWEPAGEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMK 339
Query: 295 FNMMASACTNLAFWIPTYLSNHQEPDTIDN 324
++ T F + L
Sbjct: 340 ERRFTASYTFAKFSTGSMLLTKDIVGKSGV 369
Score = 53.0 bits (127), Expect = 6e-08
Identities = 36/280 (12%), Positives = 64/280 (22%), Gaps = 45/280 (16%)
Query: 26 SIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGV-DLIR---FTHAKQAAIH- 80
+ + + ++ D+ + I+ + S G D +R ++ +
Sbjct: 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL 222
Query: 81 ASTKIDDTVRYLSLHDN-----KYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135
AS D T + + K + + S + D V LW
Sbjct: 223 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282
Query: 136 LR---------SPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFS 186
+ G G FD + S+ D K
Sbjct: 283 ENLEGKWEPAGEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFSEC---NDEIDNAKLIMK 339
Query: 187 NFKFAAEKECDWTGIKFSADGKYILISTNG------------------SIIRTFDAYNGQ 228
+F A +T KFS + G D +
Sbjct: 340 ERRFTA----SYTFAKFSTGSMLLTKDIVGKSGVSIKRLPTELQRKFLFDDVYLDKEIEK 395
Query: 229 CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
N E+S T ++W
Sbjct: 396 VTIEARK-SNPYPQISESSLLFKDALDYMEKTSSDYNLWK 434
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 84.0 bits (207), Expect = 2e-18
Identities = 27/312 (8%), Positives = 76/312 (24%), Gaps = 60/312 (19%)
Query: 4 TDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV--FS 61
++++ ++ + K + D + + ED + + T+ +
Sbjct: 19 NLELLQAQNYSRNIKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPN 78
Query: 62 KKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYF-PGHTKKVNSLCLSP--I 118
+ G + + + L NK +R ++ +
Sbjct: 79 PRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVN 138
Query: 119 DDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPI--AAFDPEGLIFGVGVNSDTIKLYD 176
+ FI T+ + + + L+ + + +Y+
Sbjct: 139 TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN 198
Query: 177 VRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGF 236
+ S D+ S F E + +KF+ +G ++++
Sbjct: 199 LSSPDQ-ASSRFPVDEEAK--IKEVKFADNGYWMVVEC---------------------- 233
Query: 237 LNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDA----DHPSPVQTIQFN 292
D + ++ K + + T +
Sbjct: 234 ------------------------DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDID 269
Query: 293 PKFNMMASACTN 304
M +
Sbjct: 270 DSGKNMIAYSNE 281
Score = 80.6 bits (198), Expect = 3e-17
Identities = 33/271 (12%), Positives = 67/271 (24%), Gaps = 19/271 (7%)
Query: 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYG-VDLIRF 71
+ + +I L+ +QI I D + R + + +
Sbjct: 74 ITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYG 133
Query: 72 THAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKK-VNSLCLSPIDDTFISGSYDKT 130
+ T+ + S D+ + +S L S D
Sbjct: 134 HNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI 193
Query: 131 VRLWDLRSPNCQGIMHVSG-SRPIA--AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSN 187
+ +++L SP+ I F G V T+ +D+R
Sbjct: 194 LDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVE-CDQTVVCFDLRKDVGTLAYP 252
Query: 188 FKFAAEKECDWTGIKFSADGKYILISTNGS----------IIRTFDAYNGQCLQTLAGFL 237
E + GK ++ +N S + + L +
Sbjct: 253 TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTA 312
Query: 238 NNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
+ + D T+ +I
Sbjct: 313 DFTDMDV---VCGDGGIAAILKTNDSFNIVA 340
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Length = 316
Score = 80.8 bits (200), Expect = 2e-17
Identities = 52/320 (16%), Positives = 92/320 (28%), Gaps = 73/320 (22%)
Query: 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNK---------RTVFSKK 63
+ + + D I G L +CS D + I+D G V+
Sbjct: 5 INTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQ-- 62
Query: 64 YGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNK-----YIRYFPGHTKKVNSLCLSPI 118
+ + H I AS D V + + GH VNS+C +P
Sbjct: 63 -----VAWAHPMYGNILASCSYDRKVI---IWREENGTWEKSHEHAGHDSSVNSVCWAPH 114
Query: 119 DD--TFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA----AFDPEGLIFGVGVNSDTI 172
D GS D + L + ++ + I ++ P + + +
Sbjct: 115 DYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQ 174
Query: 173 KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNG---QC 229
K ++ F G CD I+ + +
Sbjct: 175 KPNYIKRFASG--G---------CDNL-------------------IKLWKEEEDGQWKE 204
Query: 230 LQTLAGFLNNKGCPLEASFTPDS----KYVISGSTDGRIHIWN---AEKGFKVCVLDADH 282
Q L + + ++ P + S S DGR+ IW A L
Sbjct: 205 EQKLEA---HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF 261
Query: 283 PSPVQTIQFNPKFNMMASAC 302
V + ++ N++A +
Sbjct: 262 NDVVWHVSWSITANILAVSG 281
Score = 61.9 bits (151), Expect = 4e-11
Identities = 35/284 (12%), Positives = 74/284 (26%), Gaps = 78/284 (27%)
Query: 21 TDKITSIDYSAD--GLLLISCSEDDQIVIYDCELGTNKRTVFSK--KYGVDLIRFTHAKQ 76
+ + ++ G +L SCS D +++I+ E GT +++ V+ + +
Sbjct: 57 EGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDY 116
Query: 77 AAIHASTKIDDTVRYLSLHDNKY---IRYFPGHTKKVNSLCLSP---------------- 117
I A D + L+ + HT N++ +P
Sbjct: 117 GLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKP 176
Query: 118 -IDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYD 176
F SG D ++LW + SD
Sbjct: 177 NYIKRFASGGCDNLIKLWKEEEDGQWKEEQK--------------LEAH---SDW----- 214
Query: 177 VRSFDKGPFSNFKFAAEKECDWTGIKFSAD----GKYILISTNGSIIRTFDAYNG----Q 228
VR + ++ I + + + +
Sbjct: 215 VRD---------------------VAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTW 253
Query: 229 CLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
+ L F S++ + + D ++ +W
Sbjct: 254 SPKLLHKF---NDVVWHVSWSITANILAVSGGDNKVTLWKESVD 294
Score = 50.0 bits (120), Expect = 4e-07
Identities = 17/143 (11%), Positives = 38/143 (26%), Gaps = 52/143 (36%)
Query: 5 DNVIR--------SYKVAKLFRENTDKITSIDYSAD----GLLLISCSEDDQIVIYDCEL 52
DN+I+ +K + ++D + + ++ + SCS+D ++ I+ C+
Sbjct: 188 DNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247
Query: 53 GTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNS 112
++ + V
Sbjct: 248 ASSNTWS----------------------------------------PKLLHKFNDVVWH 267
Query: 113 LCLSPIDDTFISGSYDKTVRLWD 135
+ S + D V LW
Sbjct: 268 VSWSITANILAVSGGDNKVTLWK 290
Score = 35.7 bits (83), Expect = 0.013
Identities = 6/47 (12%), Positives = 18/47 (38%)
Query: 13 VAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTV 59
KL + D + + +S +L D+++ ++ + +
Sbjct: 254 SPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCI 300
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 79.9 bits (196), Expect = 1e-16
Identities = 25/192 (13%), Positives = 52/192 (27%), Gaps = 12/192 (6%)
Query: 87 DTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMH 146
T ++ K + + T + G + V +DL P
Sbjct: 246 ATDVHVFKMCEKPSLTLSLADSLITTFDFLS-PTTVVCGFKNGFVAEFDLTDPEVPSFYD 304
Query: 147 VSGSRPI-----AAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGI 201
I A D E + +++ + + +F + +
Sbjct: 305 QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR---GSNLVPV 361
Query: 202 KFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTD 261
+ + S S +R + + L + + V++GS D
Sbjct: 362 VYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR---ETTITAIGVSRLHPMVLAGSAD 418
Query: 262 GRIHIWNAEKGF 273
G + I NA +
Sbjct: 419 GSLIITNAARRL 430
Score = 69.5 bits (169), Expect = 2e-13
Identities = 17/216 (7%), Positives = 47/216 (21%), Gaps = 20/216 (9%)
Query: 106 HTKKVNSLCLSPIDDT------FISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPE 159
+V L S + T+ ++ + +P
Sbjct: 206 SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLA 265
Query: 160 GLIFG-----------VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGK 208
+ G + + +D+ + P + + +
Sbjct: 266 DSLITTFDFLSPTTVVCGFKNGFVAEFDLTD-PEVPSFYDQVHDSYILSVSTAYSDFEDT 324
Query: 209 YILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWN 268
+ F+ + +T + + P I +
Sbjct: 325 VVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNL-VPVVYCPQIYSYIYSDGASSLRAVP 383
Query: 269 AEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTN 304
+ F V L + + I + M+ + +
Sbjct: 384 SRAAFAVHPL-VSRETTITAIGVSRLHPMVLAGSAD 418
Score = 67.2 bits (163), Expect = 1e-12
Identities = 14/119 (11%), Positives = 45/119 (37%), Gaps = 3/119 (2%)
Query: 21 TDKITSIDY---SADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQA 77
I S+ + ++ + + D I++ + +T S+ G +L+ + Q
Sbjct: 308 DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQI 367
Query: 78 AIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
+ + ++R + + + ++ +S + ++GS D ++ + +
Sbjct: 368 YSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNA 426
Score = 55.3 bits (132), Expect = 1e-08
Identities = 10/148 (6%), Positives = 40/148 (27%), Gaps = 5/148 (3%)
Query: 35 LLISCSEDDQIVIYDCELGTNKRTVFS--KKYGVDLIRFTHAKQAAIHASTKIDDTVRYL 92
++ ++ + +D Y + + + + ++ +D
Sbjct: 279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIF 338
Query: 93 SLHDNKYIRYFPGHTKK--VNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGS 150
+ D + + + + P ++I ++R R+ + +
Sbjct: 339 NPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET 398
Query: 151 RPIA-AFDPEGLIFGVGVNSDTIKLYDV 177
A + G ++ + +
Sbjct: 399 TITAIGVSRLHPMVLAGSADGSLIITNA 426
Score = 38.3 bits (88), Expect = 0.003
Identities = 19/173 (10%), Positives = 49/173 (28%), Gaps = 15/173 (8%)
Query: 135 DLRSPNCQGIMHVSGSR-PIAAFDPEGLIFGVGVNSDTIKLYDV----RSFDKGPFSNFK 189
+ + V+ S+ + +F +S I+++ + K
Sbjct: 147 NTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHS 206
Query: 190 FAAEKECDWTGIKFSADGKYIL--ISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS 247
F + W + L +S G+I + + + L +
Sbjct: 207 FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTI-NFLEIIDNATDVHVFKMCEKPSLTLSLA 265
Query: 248 FTPDSKY-------VISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
+ + + V+ G +G + ++ D H S + ++
Sbjct: 266 DSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAY 318
Score = 34.9 bits (79), Expect = 0.033
Identities = 17/136 (12%), Positives = 38/136 (27%), Gaps = 11/136 (8%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVD 67
R+ IT+I S ++++ S D ++I + +R + K
Sbjct: 384 SRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAA----RRLLHGIKNSSA 439
Query: 68 LIRFTHAKQAAIHAST---KIDDTVRYLSLHDNKYIRY-FPGHTKKVNSLCLSPIDDT-- 121
+ + +ID + L N + H + +
Sbjct: 440 TQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGK 499
Query: 122 -FISGSYDKTVRLWDL 136
+ + + L L
Sbjct: 500 CYAFSNSAGLLTLEYL 515
Score = 29.5 bits (65), Expect = 1.8
Identities = 9/87 (10%), Positives = 18/87 (20%), Gaps = 11/87 (12%)
Query: 228 QCLQTLAGFLNN-KGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPV 286
Q + G + + K + S +G I+ + P
Sbjct: 201 QTIVHSFGEVWDLKWHE-GCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPS 259
Query: 287 QTIQFNP---------KFNMMASACTN 304
T+ + N
Sbjct: 260 LTLSLADSLITTFDFLSPTTVVCGFKN 286
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40
repeat, beta propeller, recombination; 1.90A
{Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Length = 397
Score = 78.2 bits (193), Expect = 2e-16
Identities = 38/324 (11%), Positives = 79/324 (24%), Gaps = 73/324 (22%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIH 80
I S+ +SCS D + ++D +L N+
Sbjct: 16 DADIFSVSACNSFT--VSCSGDGYLKVWDNKLLDNENPKD-------------------K 54
Query: 81 ASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPN 140
+ + + + I V + S + D+T ++ +
Sbjct: 55 SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL 114
Query: 141 CQGIMHVSGSRPIA-AFDP---EGLIFGVGVNSDTIKLYDVRSF-DKGPFSNFKFAAEKE 195
M + T ++ F D+ ++ E
Sbjct: 115 LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE 174
Query: 196 CDWTG------------IKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFLNNK 240
T + S G + + G ++ + + L
Sbjct: 175 LQGTVESPMTPSQFATSVDISERGL--IAT--GFNNGTVQISELSTLRPLYNFES----- 225
Query: 241 GCPLEA--------SFTPDSKYVISGS---TDGRIHIWNAEKGFKVCVLDAD-------- 281
+ F+P + + G I ++ E G ++ L
Sbjct: 226 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL 285
Query: 282 ----HPSPVQTIQFNPKFNMMASA 301
H S V ++ FN + SA
Sbjct: 286 GEFAHSSWVMSLSFNDSGETLCSA 309
Score = 76.3 bits (188), Expect = 1e-15
Identities = 23/185 (12%), Positives = 47/185 (25%), Gaps = 57/185 (30%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLR--------------SPNCQGIMHVSGS 150
H + S+ +S S D +++WD + + G+ HV
Sbjct: 14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 71
Query: 151 RPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYI 210
+ I E + V + + FS D +
Sbjct: 72 QAIERDAFELCL----VATTS-------------------------------FSGDLLFY 96
Query: 211 LISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPD---SKYVISGSTDGRIHIW 267
I+ + + + L+ + D S +++ G +IW
Sbjct: 97 RITREDETKKVIFEKLDLLDSDMKK---HSFWALKWGASNDRLLSHRLVATDVKGTTYIW 153
Query: 268 NAEKG 272
Sbjct: 154 KFHPF 158
Score = 74.8 bits (184), Expect = 3e-15
Identities = 25/279 (8%), Positives = 65/279 (23%), Gaps = 87/279 (31%)
Query: 5 DNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKY 64
+ + + TS+D S GL+ + + + I +
Sbjct: 170 SPTLELQGTVESPMTPSQFATSVDISERGLI-ATGFNNGTVQISELSTLR---------- 218
Query: 65 GVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFI- 123
L++ + ++ + S+ SP + +
Sbjct: 219 ----------------------------PLYNFESQHSMINNSNSIRSVKFSP-QGSLLA 249
Query: 124 SGSYDKT---VRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSF 180
+ + L++ G + V A+ +S +
Sbjct: 250 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA-------HSSWV-------- 294
Query: 181 DKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSI---IRTFDAYNGQCLQTLAGFL 237
+ F+ G+ + S +R +D + + TL
Sbjct: 295 ------------------MSLSFNDSGETLC-S--AGWDGKLRFWDVKTKERITTLNMHC 333
Query: 238 NN-KGCPLEASFTPDSKYVISGSTDG---RIHIWNAEKG 272
++ + + + W + G
Sbjct: 334 DDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG 372
Score = 74.4 bits (183), Expect = 4e-15
Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 39/165 (23%)
Query: 4 TDNVIRSYKVAKLFRENTDKITSIDYSADGLLLISCSED---DQIVIYDCELGTNKRTVF 60
T + +++ N++ I S+ +S G LL + I +Y+ E G ++
Sbjct: 216 TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS 275
Query: 61 SKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
H ++ H+ V SL + +
Sbjct: 276 VPT-------------------------------HSSQASLGEFAHSSWVMSLSFNDSGE 304
Query: 121 TFISGSYDKTVRLWDLRSPNCQGIMH-----VSGSRPIAAFDPEG 160
T S +D +R WD+++ ++ + I A D G
Sbjct: 305 TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 349
Score = 40.5 bits (95), Expect = 4e-04
Identities = 14/117 (11%), Positives = 38/117 (32%), Gaps = 17/117 (14%)
Query: 21 TDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHA--KQAA 78
+ + S+ ++ G L S D ++ +D + T+ +++ A +
Sbjct: 291 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 350
Query: 79 IHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWD 135
A + D K S + ++++ D+++R +
Sbjct: 351 SLAEPGVFDVKF---------------LKKGWRSGMGADLNESLCCVCLDRSIRWFR 392
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A
{Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Length = 355
Score = 65.4 bits (159), Expect = 4e-12
Identities = 36/325 (11%), Positives = 101/325 (31%), Gaps = 38/325 (11%)
Query: 4 TDNVIRSYKV---AKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYD-------CEL 52
T Y V A + + ++ + + + + I+D +
Sbjct: 38 TLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRI 97
Query: 53 GTNKRTVFSKKYGVDLIRFTHAKQAAIHA----STKIDDTVRYLSLHDNKYIRYFPGHTK 108
V + I ++ ++ +I D +R+ + + +
Sbjct: 98 -KVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEF 156
Query: 109 KVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEG-LIFGVGV 167
+ + ++ + + + + D+ V+ + H + + + + + ++
Sbjct: 157 NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVR-LNRKSDMVATCSQ 215
Query: 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGI---KFSADGKYILISTNGSIIRTFDA 224
+ I+++ +F + D + K+S DG + + ++ + F+
Sbjct: 216 DGTIIRVFKTEDGVL----VREF--RRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI 269
Query: 225 YNGQC--LQTLAGFLNNKGCPLEASF---------TPDSKYVISGSTDGRIHIWNAEKGF 273
+N Q L G++N K E S + S + +W +
Sbjct: 270 FNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMI 329
Query: 274 KVCVLDADHPSPVQTIQFNPKFNMM 298
+ + D IQ + + +M
Sbjct: 330 ETFKVVFDDEMERWLIQMDQREQLM 354
Score = 55.0 bits (132), Expect = 1e-08
Identities = 25/249 (10%), Positives = 59/249 (23%), Gaps = 57/249 (22%)
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL---------------------------- 136
+ V + D + + S K+ ++++
Sbjct: 17 HVSNPVTDYEFNQ-DQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAF 75
Query: 137 --RSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSD--------TIKLYDVRSFDKG--- 183
I + ++ + + + ++ + I ++ + K
Sbjct: 76 VTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITD 135
Query: 184 --------PFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAG 235
FSN E + I + S +
Sbjct: 136 DIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSS--GSATTQDQGVQQKAILGKGVLIKA 193
Query: 236 FLNNKGCPLEASFTPDSKYVISGSTDGR-IHIWNAEKGFKVCVL-DADHPSPVQTIQFNP 293
N S V + S DG I ++ E G V + V ++++
Sbjct: 194 HTNPIKM---VRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST 250
Query: 294 KFNMMASAC 302
+ +A
Sbjct: 251 DGSKLAVVS 259
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 54.0 bits (130), Expect = 2e-08
Identities = 40/254 (15%), Positives = 83/254 (32%), Gaps = 22/254 (8%)
Query: 27 IDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKI 85
S DG + ++ + + + I D TV + + + + +
Sbjct: 37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVY-VTNMA 94
Query: 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT-FISGSYDKTVRLWDLRSPNCQGI 144
T+ + N K L LSP +++ + DKTV + + +
Sbjct: 95 SSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT 153
Query: 145 MHVSGSRPIA-AFDPEG-LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIK 202
+ V G P A P+G ++ +S +I + D + + A +GI
Sbjct: 154 VSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAP------SGIA 206
Query: 203 FSADGKYILISTNGSIIRT---FDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYV-ISG 258
+ +G ++ T D + + + P + TPD K V ++
Sbjct: 207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD----PAGIAVTPDGKKVYVAL 262
Query: 259 STDGRIHIWNAEKG 272
S + + +
Sbjct: 263 SFXNTVSVIDTATN 276
Score = 44.4 bits (105), Expect = 3e-05
Identities = 35/200 (17%), Positives = 68/200 (34%), Gaps = 33/200 (16%)
Query: 86 DDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT-FISGSYDKTVRLWDLRSPNCQGI 144
D + + + NK P +SP +++ ++ V + D + N
Sbjct: 11 SDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT 69
Query: 145 MHVSGSRPIA-AFDPEG-LIFGVGVNSDTIKLYDVRSF--------DKGPFSNFKFAAEK 194
+ GS P A P+G ++ + S T+ + D S K P
Sbjct: 70 VPA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSP---------- 118
Query: 195 ECDWTGIKFSADGKYILISTNGS-IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK 253
G+ S DGK + ++ NG + + + T++ + P + TPD
Sbjct: 119 ----LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS----PKGIAVTPDGT 170
Query: 254 YV-ISGSTDGRIHIWNAEKG 272
V ++ I + +
Sbjct: 171 KVYVANFDSMSISVIDTVTN 190
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY
crystallography, beta-propeller, structure, mRNA export,
NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens}
PDB: 3fmo_A* 3fmp_A* 3fhc_A
Length = 434
Score = 52.2 bits (124), Expect = 9e-08
Identities = 36/251 (14%), Positives = 73/251 (29%), Gaps = 39/251 (15%)
Query: 97 NKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTV--RLWDLRSPNCQGIMHVSGSRPIA 154
NKY F G + + G + ++ L P I H+
Sbjct: 46 NKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHL------- 98
Query: 155 AFDPEGLIFGVGVNS----DTIKLYDVRSF------DKGPFSNFKFAAEKECDWTGIKFS 204
A + L + S I +DVR+F K PF+ K + +K++
Sbjct: 99 ALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWN 158
Query: 205 ADGKYIL-ISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGR 263
++ + I + ++P K + G +G
Sbjct: 159 PTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTS---VCWSPKGKQLAVGKQNGT 215
Query: 264 IHIWNAEKGFKVCV-----LDADHPSPVQTIQFNPKFNMMASACTNLAFWIPTYLSNHQE 318
+ + K + ++DHP V + + + + Y +
Sbjct: 216 VVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYV-----------FAIVYAAADGT 264
Query: 319 PDTIDNLKIYL 329
+T ++ + L
Sbjct: 265 LETSPDVVMAL 275
Score = 45.3 bits (106), Expect = 2e-05
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 14/136 (10%)
Query: 23 KITSIDYSADGLLLISC----SEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ-- 76
I + S D L L +C I +D +N+ + + +
Sbjct: 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVI 153
Query: 77 --------AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYD 128
++ A D ++ L + + + T V S+C SP G +
Sbjct: 154 DMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQN 213
Query: 129 KTVRLWDLRSPNCQGI 144
TV + + I
Sbjct: 214 GTVVQYLPTLQEKKVI 229
Score = 34.1 bits (77), Expect = 0.062
Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 18/142 (12%)
Query: 8 IRSYKVAKLFRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSK----- 62
+ +T +TS+ +S G L ++ +V Y K+ +
Sbjct: 179 VTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYES 237
Query: 63 --KYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDD 120
V + + AI + + + P +K + ++ ++
Sbjct: 238 DHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV----VMALLPKKEEKHPEIFVNFMEP 293
Query: 121 TFISGS------YDKTVRLWDL 136
+ S + Y + WDL
Sbjct: 294 CYGSCTERQHHYYLSYIEEWDL 315
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 51.8 bits (124), Expect = 1e-07
Identities = 39/290 (13%), Positives = 74/290 (25%), Gaps = 45/290 (15%)
Query: 26 SIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVF--SKKYGVDLIRFT-HAKQAAIHAS 82
S+ + + L I ED+ + + D G R K + + + + S
Sbjct: 127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVS 186
Query: 83 TKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDT-FISGSYDKTVRLWDLRSPNC 141
+ V L Y K L PI D + S + + + D ++
Sbjct: 187 QMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE 246
Query: 142 QGIMHVSGSRPIA-AFDPEG--------LIFGVGVNSDTIKLYDVRSF--------DKGP 184
P +G + +Y +
Sbjct: 247 IRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNK 305
Query: 185 FSNFKFAAEKECDWTGIKFSADGKYILISTNGS-IIRTFDAYNGQCLQTLAGFLNNKGCP 243
I I +S I +D + +++ F P
Sbjct: 306 R--------------HIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDK----P 347
Query: 244 LEASFTPDSK--YVISGSTDG--RIHIWNAEKGFKVCVLDADHPSPVQTI 289
+ +PD K YV + ++ KV V+D + +
Sbjct: 348 NTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW 397
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia,
homologous recomination, polymorphism, phosphoprotein,
beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB:
3eu7_A
Length = 356
Score = 45.6 bits (107), Expect = 1e-05
Identities = 32/243 (13%), Positives = 82/243 (33%), Gaps = 21/243 (8%)
Query: 44 QIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDN---KYI 100
+ + + +++ V K + + ++ + T D V ++ ++ K
Sbjct: 115 RALFCSSD-DESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKEN 173
Query: 101 RYFPGHTKKVNSLCLSPIDDTFISGS-YDKTVRLWDLRSPNCQGIMHVSGSRP----IAA 155
++ + + + + G+ + +W+L++ MH+ S A
Sbjct: 174 QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKA 233
Query: 156 FDPEGLIFGVGVNSDTIKLYDVRSFD-----KGPFSNFKFAAEKECDWTG-----IKFSA 205
+ GL+F V + + +RS P + C G ++
Sbjct: 234 YSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV 293
Query: 206 DGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIH 265
I +D GQC L ++++ ++ ++++G DG I
Sbjct: 294 KDHCAAAILTSGTIAIWDLLLGQCTALLPP-VSDQHWSF-VKWSGTDSHLLAGQKDGNIF 351
Query: 266 IWN 268
+++
Sbjct: 352 VYH 354
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 1e-04
Identities = 34/189 (17%), Positives = 56/189 (29%), Gaps = 73/189 (38%)
Query: 1 MKLTDNVIRSYKVAKLFRENTDKITSIDYSAD-GLLLISCSEDDQIVIYDCELGTNKRTV 59
M V K K+F+E + TS + ++ GLL T
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL--------------------SAT- 1729
Query: 60 FSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIR---------YFPGHTKKV 110
+FT Q A+ + + D ++ F GH
Sbjct: 1730 ----------QFT---QPALT-------LMEKAAFED---LKSKGLIPADATFAGH---- 1762
Query: 111 NSL-------CLS---PIDDT----FISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAF 156
SL L+ I+ F G + D + G++ ++ R A+F
Sbjct: 1763 -SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 157 DPEGLIFGV 165
E L + V
Sbjct: 1822 SQEALQYVV 1830
Score = 35.0 bits (80), Expect = 0.042
Identities = 53/324 (16%), Positives = 94/324 (29%), Gaps = 98/324 (30%)
Query: 70 RFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYF--------PGHTKKVNSLCLSPIDDT 121
+F D+ L K++ Y G +V +LCL+ ++
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELV-GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC 94
Query: 122 FISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLY-DVRSF 180
++ G+ D+ H +AA + + + IK Y R
Sbjct: 95 YLEGN--------DI---------HA-----LAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 181 DKGPFSN------FKFAAEKECDWTGIKFSADG---KYI-----LISTNGSIIRTFDAYN 226
K PF F+ E I F G Y L T ++ ++
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAI-FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS 191
Query: 227 GQCLQTL------AGFLNNKGCPL-----EASFTPDSKYVIS------------------ 257
+ L L A + +G + S TPD Y++S
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV 251
Query: 258 -----GSTDGRIHIWNAEKGFKVC---VLDADHPSPVQTIQFNPKFNMMASACTNLAFWI 309
G T G + + KG ++ A + + + F + + F+I
Sbjct: 252 TAKLLGFTPGELR--SYLKGATGHSQGLVTAVAIAETDSWE---SFFVSVRKAITVLFFI 306
Query: 310 ---------PTYLSNHQEPDTIDN 324
T L D+++N
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLEN 330
Score = 32.3 bits (73), Expect = 0.24
Identities = 58/362 (16%), Positives = 102/362 (28%), Gaps = 143/362 (39%)
Query: 19 ENTDKITSIDYSAD--------GLLLISCSEDDQIVIY--DCE-LGTNKRTVFSKKYGVD 67
EN DY G++ Q+ Y + LG + S G
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVI--------QLAHYVVTAKLLGFTPGELRSYLKGA- 270
Query: 68 LIRFTHAKQ---AAIHASTKIDDTVRYLSLHDN--KYIRY-----------FPGHTKKVN 111
H++ A A T + S + K I +P
Sbjct: 271 ---TGHSQGLVTAVAIAETDSWE-----SFFVSVRKAITVLFFIGVRCYEAYP-----NT 317
Query: 112 SLCLSPIDDTF------------ISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA----- 154
SL S ++D+ IS + V+ + + N H+ + +
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY-VNKTNS----HLPAGKQVEISLVN 372
Query: 155 ---AF----DPEGLIFGVGVNSDTIKLYDVRSFD--KGPFSNFK------F--------- 190
P+ L G+N K D + PFS K F
Sbjct: 373 GAKNLVVSGPPQSL---YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS 429
Query: 191 -----AAEK-ECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPL 244
A++ D S + K I I +D ++G L+ L+G ++ +
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPV-------YDTFDGSDLRVLSGSISERIVDC 482
Query: 245 --------EASFTPDSKYVI-------SG-------STDGR-IHI---------WNAEKG 272
E + + +++ SG + DG + + + + G
Sbjct: 483 IIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Query: 273 FK 274
FK
Sbjct: 543 FK 544
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit;
oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus
denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Length = 337
Score = 40.5 bits (94), Expect = 4e-04
Identities = 31/308 (10%), Positives = 66/308 (21%), Gaps = 55/308 (17%)
Query: 4 TDNVIRSYKVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSK 62
V + +A + G + + ++ + +V D L T + T+
Sbjct: 20 KMAVDKVITIADAGPTPM----VPMVAPGGRIAYATVNKSESLVKID--LVTGE-TLGRI 72
Query: 63 KYGVDLIRFTHAKQAAIHASTK------------------IDDTVRYLSLHDNKYIRYFP 104
R AA+ K V + F
Sbjct: 73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132
Query: 105 GHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIF- 163
+++ L + D + + D + + P+ L
Sbjct: 133 AP-RQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW 189
Query: 164 --GVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECD-----------------WTGIKFS 204
Y R D + +
Sbjct: 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN 249
Query: 205 ADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRI 264
+ N + +FD ++ + + + D V G G +
Sbjct: 250 PAKTRAFGAYNV--LESFDLEKNASIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDL 303
Query: 265 HIWNAEKG 272
++AE
Sbjct: 304 AAYDAETL 311
Score = 32.0 bits (72), Expect = 0.24
Identities = 26/219 (11%), Positives = 54/219 (24%), Gaps = 43/219 (19%)
Query: 22 DKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHA 81
+IT + ++ DG L D + + D E GT + + +
Sbjct: 135 RQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192
Query: 82 STKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNC 141
+ + + + D +Y + DL +
Sbjct: 193 ESSGVMATPFYTARKD---------------------IDPADPTAYRTGLLTMDLET--- 228
Query: 142 QGIMHVSGSRPIAAFDPEG-LIFGVGVNSDTIKLY----DVRSFDKGPFSNFKFAAEKEC 196
G + F VN + + + SFD
Sbjct: 229 -------GEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFD---LEKNASIKRVPL 278
Query: 197 DWT--GIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL 233
+ + S DG + + + +DA + +
Sbjct: 279 PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV 317
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase
family S9, hydrolase; 2.80A {Stenotrophomonas
maltophilia}
Length = 741
Score = 40.9 bits (96), Expect = 5e-04
Identities = 16/118 (13%), Positives = 34/118 (28%), Gaps = 14/118 (11%)
Query: 155 AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIST 214
D + ++ G SD K R ++S D + +L
Sbjct: 79 LVDSKVVLPGTETLSDEEKARRERQRIAAMTG-----------IVDYQWSPDAQRLLFPL 127
Query: 215 NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
G + +D + + +G +A +P +V + + + G
Sbjct: 128 GGELYL-YDLKQEG-KAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASG 182
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 37.4 bits (87), Expect = 0.004
Identities = 18/161 (11%), Positives = 46/161 (28%), Gaps = 11/161 (6%)
Query: 122 FISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD 181
+ + + V D ++ +G + + + P + + T +Y
Sbjct: 104 WFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQP-RELVADDATNTVYISGIGK 162
Query: 182 KGPFSNFKFAAEKECD--------WTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTL 233
+ K TG+ ++GK + + + T D + + L
Sbjct: 163 ESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK 222
Query: 234 A-GFLNNKGCPLEASFTPDSKYV-ISGSTDGRIHIWNAEKG 272
+ + S + I+ S + + + G
Sbjct: 223 KLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263
Score = 36.3 bits (84), Expect = 0.011
Identities = 25/253 (9%), Positives = 61/253 (24%), Gaps = 42/253 (16%)
Query: 27 IDYSADG-LLLISCSEDDQIVIYDCE---------LGTNKRTVFSKKYGVDLIRFTHAKQ 76
+ L + + + D + L KRT + + A
Sbjct: 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN 153
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
+ + + + + K K L L + + D + D
Sbjct: 154 TVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDT 213
Query: 137 RSPNCQGIMHV--SGSRPIA---AFDPEG-LIFGVGVNSDTIKLYDVRSFD-------KG 183
+ G + D F + + + D R+ +
Sbjct: 214 ADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE 273
Query: 184 PFSNFKFAAEKECDWTGIKFSADGKYILISTNGS-IIRTFDAYNGQCLQTLAGFLNNKGC 242
+ F+ ++ + + DA + + ++T +
Sbjct: 274 SL--------------AVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTH---- 315
Query: 243 PLEASFTPDSKYV 255
P + + D K +
Sbjct: 316 PNSLALSADGKTL 328
Score = 29.7 bits (67), Expect = 1.2
Identities = 10/81 (12%), Positives = 27/81 (33%), Gaps = 12/81 (14%)
Query: 200 GIKFSADGKYILISTNGSIIRT-------FDAYNGQCLQTLAGFLNNKGCPLEASFTPDS 252
+ +S + ++T+ S D + Q + L P A+ +
Sbjct: 45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK----PFGATINNTT 100
Query: 253 KYV-ISGSTDGRIHIWNAEKG 272
+ + + + + +A+ G
Sbjct: 101 QTLWFGNTVNSAVTAIDAKTG 121
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 37.4 bits (87), Expect = 0.005
Identities = 37/291 (12%), Positives = 86/291 (29%), Gaps = 36/291 (12%)
Query: 4 TDNVIRSYKVAKLFRENTDKITSIDYSADG-LLLISCSEDDQIVIYDCELGTNKRTVFSK 62
T ++ + ++D ++++ +V + V +
Sbjct: 29 TLEILNQITLG-------YDFVDTAITSDCSNVVVTSDFCQTLVQIE--TQLEPPKVVAI 79
Query: 63 KYGVD---LIRFTHA-KQAAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPI 118
+ G + T + A ++ S NK+I P + +SP
Sbjct: 80 QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP-IPYDAVGIAISP- 137
Query: 119 DDTFI---SGSYDKTVRLWDLRSPNCQGIMHVS----GSRPI-AAFDPEG-LIFGVGVNS 169
+ + S TVR + + + G+RP F P+G F +
Sbjct: 138 NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIG 197
Query: 170 DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSI-IRTFDAYNGQ 228
++I + + ++ + N I S DG + + T ++ + F+ +G
Sbjct: 198 NSIGILETQNPENITLLNAVGTNNLP---GTIVVSRDGSTVYVLTESTVDVFNFNQLSGT 254
Query: 229 CLQT------LAGFLNNKGCPLEASFTPDSKYV-ISGSTDGRIHIWNAEKG 272
L + + + IS + + ++
Sbjct: 255 LSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305
Score = 37.1 bits (86), Expect = 0.006
Identities = 23/166 (13%), Positives = 50/166 (30%), Gaps = 11/166 (6%)
Query: 122 FISGSYDKTVRLWDLRSPNCQGIMHV-SGSRPIA-AFDPEG-LIFGVGVNSDTIKLYDVR 178
++ + +T+ + + + + S P+ V + +
Sbjct: 55 VVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYS 114
Query: 179 SFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGS--IIRTFDAYNGQCLQTLAGF 236
S + GI S +G +++ S +R F L
Sbjct: 115 FLKNKFISTIPIPYDAV----GIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE 170
Query: 237 LNNKGC-PLEASFTPDSKYV-ISGSTDGRIHIWNAEKGFKVCVLDA 280
+ G P +FTPD + ++ I I + + +L+A
Sbjct: 171 FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNA 216
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 35.9 bits (82), Expect = 0.016
Identities = 30/210 (14%), Positives = 61/210 (29%), Gaps = 33/210 (15%)
Query: 89 VRYLSLHDNKYIRYFPG---HTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIM 145
R+L+ D + I + G + ++ + I+ I R+ + S +
Sbjct: 249 PRHLNT-DGRRILFSKGGSIYIFNPDTEKIEKIE---IGDLESPEDRIISIPSKFAEDFS 304
Query: 146 HVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSA 205
+ G AF G F V+ + + +
Sbjct: 305 PLDGDL--IAFVSRGQAFIQDVSGTYVLKVPEPLRIRYV-----------------RRGG 345
Query: 206 DGKYILIS--TNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGR 263
D K I G + +D G+ + F N G + K+ + +
Sbjct: 346 DTKVAFIHGTREGDFLGIYDYRTGKAEK----FEENLGNVFAMGVDRNGKFAVVANDRFE 401
Query: 264 IHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
I + E G K V++ + + +
Sbjct: 402 IMTVDLETG-KPTVIERSREAMITDFTISD 430
Score = 33.6 bits (76), Expect = 0.10
Identities = 33/220 (15%), Positives = 56/220 (25%), Gaps = 21/220 (9%)
Query: 17 FRENTDKITSIDYSADGLLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQ 76
K DG L I+ Q I D + + + +R +
Sbjct: 292 IISIPSKFAEDFSPLDGDL-IAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTK 348
Query: 77 AAIHASTKIDDTVRYLSLHDNKYIRYFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDL 136
A T+ D + K F + V ++ + + + + DL
Sbjct: 349 VAFIHGTREGDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL 407
Query: 137 RSPNCQGIMHVSG-----------SRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPF 185
+ I SR IA P G I +YD+
Sbjct: 408 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 467
Query: 186 SNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAY 225
+ F AD K + + S+ + D
Sbjct: 468 TTENSHD------YAPAFDADSKNLYYLSYRSLDPSPDRV 501
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease
inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A
{Leishmania major}
Length = 751
Score = 34.9 bits (81), Expect = 0.033
Identities = 14/99 (14%), Positives = 25/99 (25%), Gaps = 17/99 (17%)
Query: 198 WTGIKFSADGKYILI---STNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKY 254
+ +AD + I S + + D G TL +Y
Sbjct: 273 SAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP---------REKGVRY 323
Query: 255 VISGSTDGRIHI----WNAEKGFKVCVLDADHPSPVQTI 289
+ + I A K+ + PS +
Sbjct: 324 DVQMHGTSHLVILTNEGGAVN-HKLLIAPRGQPSDWSHV 361
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 34.8 bits (80), Expect = 0.038
Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 11/113 (9%)
Query: 168 NSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG------SIIRT 221
T++L++V + + + + S D +Y L S N S
Sbjct: 35 QKGTVRLWNVETNTSTVL--IEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92
Query: 222 FDAYN--GQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
+ Q+L + A + P + +I + I+
Sbjct: 93 YVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGK 144
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.039
Identities = 57/379 (15%), Positives = 106/379 (27%), Gaps = 105/379 (27%)
Query: 10 SYK-VAKLFRENTDKITSIDYSADGLL-LISCSEDDQIV-----------IYDCELGTNK 56
YK + +F + D ++S E D I+ ++ L +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 57 RTVFSKKYGVDLIRFTHA-KQAAIHASTKI--DDTVRYLSLHDNKY--IRYFPGHT---- 107
V +K+ +++R + + I + T Y+ D Y + F +
Sbjct: 77 EMV--QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 108 KKVNSL-----CLSPIDDTFI-----SGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFD 157
+ L L P + I SG KT + C S +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSG---KTW----VALDVCL-------SYKVQCKM 180
Query: 158 PEGLIF--GVG-VNSDTI------KLYDVRSFDKGPFSNFKFAAEKECDWTGIKFS---A 205
IF + NS KL + S+ + +
Sbjct: 181 DFK-IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 206 DGKY---ILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYV---ISGS 259
Y +L+ N + ++A+N C + L T K V +S +
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSC-KIL--------------LTTRFKQVTDFLSAA 284
Query: 260 TDGRIHIWNAEKGF------KVCVLDADHPS---PVQTIQFNP-KFNMMASACTNLAFWI 309
T I + + + + D P + + NP + +++A +
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI------- 337
Query: 310 PTYLSNHQEPDTIDNLKIY 328
T DN K
Sbjct: 338 ------RDGLATWDNWKHV 350
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller,
assembly FAC; 1.50A {Thermosynechococcus elongatus}
Length = 327
Score = 34.2 bits (78), Expect = 0.051
Identities = 9/72 (12%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 154 AAFDPEGLIFGVGVNSDTIKLYDVRSFDKG-PFSNFKFAAEKECDWTGIKFSADGKYILI 212
A+ ++ G + S D G + + ++ I F + + ++
Sbjct: 255 LAYRTPNEVWLAGGAGALL-----CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFIL 309
Query: 213 STNGSIIRTFDA 224
G ++R
Sbjct: 310 GQKGILLRYVTD 321
Score = 30.0 bits (67), Expect = 1.2
Identities = 14/113 (12%), Positives = 30/113 (26%), Gaps = 9/113 (7%)
Query: 154 AAFDPEGLIFGVGVNSDTIKLYDVRSFDKGP-FSNFKFAAEKECDW-TGIKFSADGKYIL 211
F P+G ++ + D + + + + + L
Sbjct: 210 MGFTPDGRLWMIVNGGKIA----FSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWL 265
Query: 212 ISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRI 264
G+++ + D GQ Q + F + I G G +
Sbjct: 266 AGGAGALLCSQD--GGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQ-KGIL 315
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane
protein folding, negative, BAMA, protein binding; 1.65A
{Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A
2yh3_A
Length = 376
Score = 32.5 bits (74), Expect = 0.20
Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 205 ADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRI 264
+DG ++ ++NG + + +G T+ + + E++ T + G +GR+
Sbjct: 142 SDGLVLIHTSNGQLQ-ALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRV 200
Query: 265 HIWNAEKG 272
E+G
Sbjct: 201 SAVLMEQG 208
Score = 29.0 bits (65), Expect = 2.4
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 203 FSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDG 262
F DG I + + G L T + L+ L S + ++ G ++G
Sbjct: 273 FIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH----RLLTSPVLYNGNLVVGDSEG 328
Query: 263 RIHIWNAEKG 272
+H N E G
Sbjct: 329 YLHWINVEDG 338
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant;
triangular beta-sheet cluster, signaling protein; 3.10A
{Homo sapiens}
Length = 369
Score = 32.3 bits (73), Expect = 0.20
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 8/82 (9%)
Query: 204 SADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGR 263
S+DG + D G+ QTL S +P + + G T+
Sbjct: 90 SSDGILYMGKKQDIWY-VIDLLTGEKQQTL-------SSAFADSLSPSTSLLYLGRTEYT 141
Query: 264 IHIWNAEKGFKVCVLDADHPSP 285
I +++ + +
Sbjct: 142 ITMYDTKTRELRWNATYFDYAA 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A
{Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Length = 349
Score = 32.0 bits (72), Expect = 0.26
Identities = 19/197 (9%), Positives = 49/197 (24%), Gaps = 27/197 (13%)
Query: 86 DDTVRYLSLHDNKYIRYFP-GHTKKVNSLCLSPIDDT--FISGSYDKTVRLWDLRSPNCQ 142
+ + + + + + + ++P D+ ++ ++ + DL +
Sbjct: 20 PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNT 78
Query: 143 GIMHVSGSRPIAAFDPEGLIFG------VGVNSDTIKLYDVRSFDKGPFSNFKFAAEKEC 196
++S + T +L D F A E
Sbjct: 79 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138
Query: 197 D----------WTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEA 246
++ + DG + + + D G+ L + +
Sbjct: 139 KPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKM---DVKTGKYTVALP----LRNWNRKG 191
Query: 247 SFTPDSKYVISGSTDGR 263
PD Y +
Sbjct: 192 YSAPDVLYFWPHQSPRH 208
Score = 30.9 bits (69), Expect = 0.51
Identities = 11/100 (11%), Positives = 24/100 (24%), Gaps = 7/100 (7%)
Query: 200 GIKFSADGKYILISTNGS-IIRTFDAYNGQCLQTLA---GFLNNKGCPLEASFTPDSK-- 253
+ D + + N I D + + +PD K
Sbjct: 47 TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEV 106
Query: 254 YVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
Y T + + ++ V + ++ P
Sbjct: 107 YATVNPTQRLNDHYVVKPP-RLEVFSTADGLEAKPVRTFP 145
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase,
tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR
PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A*
2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A*
2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A*
2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Length = 361
Score = 31.8 bits (71), Expect = 0.30
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 18/105 (17%)
Query: 200 GIKFSADGKYILISTNGS----------IIRTFDAYNGQCLQTLAGFLNNKGCPLEASFT 249
++ S DGK I T ++ +DA + ++ P +
Sbjct: 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISL-------PPKRVQG 106
Query: 250 PDSKYVISGSTDGR-IHIWNAEKGFKVCVLDADHPSPVQTIQFNP 293
+ + +TDG+ I + NA + ++D V+ +
Sbjct: 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA 151
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
{Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
3bjm_A* 3eio_A* ...
Length = 740
Score = 31.0 bits (70), Expect = 0.58
Identities = 15/112 (13%), Positives = 34/112 (30%), Gaps = 8/112 (7%)
Query: 167 VNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG------SIIR 220
+ I +++ + F E S DG++IL+ N S
Sbjct: 33 KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92
Query: 221 TFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
++D Y+ + L +++P + + I++
Sbjct: 93 SYDIYDLN-KRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL 142
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 31.0 bits (70), Expect = 0.59
Identities = 12/112 (10%), Positives = 34/112 (30%), Gaps = 16/112 (14%)
Query: 170 DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG-SIIR-------- 220
+ I LY++ + K + + S D +++ + ++ + R
Sbjct: 36 NNIVLYNIETGQSYTI--LSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY 93
Query: 221 TFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKG 272
+D NG+ ++ ++P + I++
Sbjct: 94 IYDLSNGEFVRG----NELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGD 140
>2mad_H Methylamine dehydrogenase (heavy subunit);
oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A
{Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H*
1maf_H*
Length = 373
Score = 31.0 bits (69), Expect = 0.61
Identities = 9/98 (9%), Positives = 24/98 (24%), Gaps = 9/98 (9%)
Query: 200 GIKFSADGKYILIST-------NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDS 252
+ G +++ G + ++ +A P S
Sbjct: 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD--APRFDVGPYS 127
Query: 253 KYVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQ 290
+ + + + G V ++ S Q +
Sbjct: 128 WMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS 165
Score = 27.9 bits (61), Expect = 5.6
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 199 TGIKFSADGKYILISTNG--SIIRTFDAYNGQCLQTL 233
I + DG L + + ++ +DA G Q+
Sbjct: 321 DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold,
antibody, immune system; NMR {Homo sapiens}
Length = 376
Score = 30.3 bits (67), Expect = 0.97
Identities = 19/172 (11%), Positives = 37/172 (21%), Gaps = 11/172 (6%)
Query: 134 WDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE 193
R P C + + GS K + F +
Sbjct: 120 GPTRLPTCVSVFPLEGSIEGRGGSELA--DPEVPRDCGCKPCICTVPEVSSVFIFPPKPK 177
Query: 194 KECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSK 253
T + + + ++ + + + +S
Sbjct: 178 DVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEV---------HTAQTQPREEQFNST 228
Query: 254 YVISGSTDGRIHIWNAEKGFKVCVLDADHPSPVQTIQFNPKFNMMASACTNL 305
+ W K FK V A P+P++ K A +
Sbjct: 229 FRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTI 280
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins,
electron transfer complex, TTQ, electron transport,
oxidoreductase, periplasm, transport, metal- binding;
HET: TRQ; 2.50A {Paracoccus versutus}
Length = 426
Score = 30.4 bits (67), Expect = 0.98
Identities = 28/238 (11%), Positives = 65/238 (27%), Gaps = 35/238 (14%)
Query: 27 IDYSADG--LLLISCSEDDQIVIYDCELGTNKRTVFSKKYGVDLIRFTHAKQAAIHASTK 84
+ D LL S + + D E T R + V +
Sbjct: 182 NALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRML-----DVPDCYHIFPASPTVFYMNC 236
Query: 85 IDDTVRYLSLHDNKYIR-----YFPGHTKKVNSLCLSPIDDTFISGSYDKTVRLWDLRSP 139
D ++ + D + + +N S + +Y + DL +
Sbjct: 237 RDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAE 296
Query: 140 NCQGIMHVS---GSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAE--- 193
+ + + P G + + ++Y + + + + +
Sbjct: 297 GATFRAPIEALTEAERADDWRPGG-WQQTAYHRQSDRIY-LLVDQRDEWKHKAASRFVVV 354
Query: 194 -----KECDWT--------GIKFSADGKYILISTNG--SIIRTFDAYNGQCLQTLAGF 236
E I S D + +L + + + +DA G+ L+++
Sbjct: 355 LNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQL 412
Score = 29.2 bits (64), Expect = 2.1
Identities = 8/99 (8%), Positives = 26/99 (26%), Gaps = 11/99 (11%)
Query: 200 GIKFSADGKYILIST-------NGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDS 252
+ DG + ++ G + ++ +A
Sbjct: 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWM 181
Query: 253 KYVISGSTDGR-IHIWNAEKGFKVCVLDADHPSPVQTIQ 290
+ + D + + + V V+D + + + +
Sbjct: 182 NAL---TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD 217
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded
beta-propeller, structural genomics, PSI-2; 1.85A
{Agrobacterium tumefaciens str}
Length = 297
Score = 29.7 bits (67), Expect = 1.2
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 203 FSADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYV-ISGSTD 261
+S DGKY+L+++ G + R A + + GF C + +PD IS +
Sbjct: 49 WSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFA--TICNNDHGISPDGALYAISDKVE 106
Query: 262 G---RIHIWNAEKG 272
I++ + G
Sbjct: 107 FGKSAIYLLPSTGG 120
Score = 27.4 bits (61), Expect = 6.2
Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 203 FSADGKYILISTN--GSI-IRTFDAYNGQCLQ-TLAGFLNNKGCPLEASFTPDSKYVISG 258
+S DG++I +++ G + I + T + + + +P V+
Sbjct: 180 YSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGD-----WFPHPSPSGDKVVFV 234
Query: 259 STDGRIHIWNAEKGFKVCVLDAD 281
S D + + +V ++D D
Sbjct: 235 SYDADVFDHPRDLDVRVQLMDMD 257
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural
genomics, PSI-2, protein structure initiative; 2.60A
{Vibrio parahaemolyticus rimd 2210633}
Length = 396
Score = 29.2 bits (64), Expect = 2.3
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 6/83 (7%)
Query: 203 FSADGKYILISTN---GSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGS 259
F+ DGK +L + + + Q +Q G +N + D +
Sbjct: 43 FTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGG---FISTDERAFFYVK 99
Query: 260 TDGRIHIWNAEKGFKVCVLDADH 282
+ + + E + + D
Sbjct: 100 NELNLMKVDLETLEEQVIYTVDE 122
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease,
hydrolase, magnesium, metal-binding; 1.60A
{Chlorobaculum tepidum}
Length = 146
Score = 28.2 bits (64), Expect = 2.5
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 251 DSKYVISGSTDGRIHIWNAEKGFK 274
DS Y+++ +G + W G+K
Sbjct: 70 DSAYLVNAMNEGWLKRWVK-NGWK 92
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.7
Identities = 5/12 (41%), Positives = 7/12 (58%), Gaps = 3/12 (25%)
Query: 244 LEAS---FTPDS 252
L+AS + DS
Sbjct: 25 LQASLKLYADDS 36
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus
thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Length = 166
Score = 27.9 bits (63), Expect = 3.0
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 251 DSKYVISGSTDGRIHIWNAEKGFK 274
DS Y+ T+G + W +G++
Sbjct: 74 DSHYLKKAFTEGWLEGWRK-RGWR 96
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A
{Yersinia enterocolitica subsp}
Length = 388
Score = 28.6 bits (63), Expect = 3.0
Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 17/113 (15%)
Query: 172 IKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILIS---------TNGSIIRTF 222
I D + + ++ + ++ G DG + N + F
Sbjct: 266 IYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVF 325
Query: 223 DAYNGQCLQ-------TLAGFLNNKGCPLEASFTPDSKYVISGST-DGRIHIW 267
+ NG + + + SFTPD K ++ S G+ ++
Sbjct: 326 NMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 28.2 bits (63), Expect = 3.7
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 269 AEKGFKVCVLDAD 281
A K+ +D D
Sbjct: 25 ASDYDKIYAVDGD 37
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell
division, cell cycle; 2.60A {Archaeoglobus fulgidus}
SCOP: c.37.1.10
Length = 263
Score = 27.9 bits (63), Expect = 4.4
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 269 AEKGFKVCVLDAD 281
A+ G V ++DAD
Sbjct: 28 AQLGHDVTIVDAD 40
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell
division inhibitor, MINC, MINE, cell hydrolase; HET:
ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Length = 260
Score = 28.0 bits (63), Expect = 4.6
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 269 AEKGFKVCVLDAD 281
A+KG K V+D
Sbjct: 28 AQKGKKTVVIDFA 40
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered,
protein-ADP complex, cell cycle, hydrolase; HET: ADP;
2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A*
1ion_A*
Length = 237
Score = 27.5 bits (62), Expect = 5.1
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 269 AEKGFKVCVLDADHP 283
++G KV +D D
Sbjct: 28 GDRGRKVLAVDGDLT 42
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A
{Pseudomonas fluorescens}
Length = 592
Score = 28.0 bits (61), Expect = 6.2
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 8/67 (11%)
Query: 155 AFDPEGLIFGVGVNS-------DTIKLYDVRSFDKGPFSNFKFAAE-KECDWTGIKFSAD 206
FD G ++ + + + D +F C+ TGI FS D
Sbjct: 482 GFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPD 541
Query: 207 GKYILIS 213
K + +
Sbjct: 542 QKTLFVG 548
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 27.7 bits (62), Expect = 6.3
Identities = 18/176 (10%), Positives = 44/176 (25%), Gaps = 9/176 (5%)
Query: 111 NSLCLSPIDDTFISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIA-AFDPEGLIFGVGVNS 169
+ D + + + + + GS P + ++ +
Sbjct: 107 YGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQN 166
Query: 170 DTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSADGKYILISTNGSIIRTFDAYNGQC 229
++I G + GI DG + G+ I G+
Sbjct: 167 NSIGRITN----TGKLEEYPLPTNAAAPV-GITSGNDGALWFVEIMGNKIGRITT-TGE- 219
Query: 230 LQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHIWNAEKGFKVCVLDADHPSP 285
+ P + +S+ + +I + + L ++ P
Sbjct: 220 -ISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEP 274
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.00A {Escherichia coli} SCOP:
b.69.11.1
Length = 343
Score = 27.3 bits (61), Expect = 6.6
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 185 FSNFKFAAEKECDWTGIKFSADGKYILISTNG-SIIRTF--DAYNGQCLQTLAGFLNNKG 241
FS+ ++AA+ I + DG+++ S+I F + + GF +
Sbjct: 227 FSDTRWAAD-------IHITPDGRHLYACDRTASLITVFSVSEDGS--VLSKEGFQPTET 277
Query: 242 CPLEASFTPDSKYVISGS-TDGRIHIW--NAEKG 272
P + KY+I+ I ++ E+G
Sbjct: 278 QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQG 311
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 27.5 bits (61), Expect = 7.7
Identities = 18/152 (11%), Positives = 44/152 (28%), Gaps = 11/152 (7%)
Query: 122 FISGSYDKTVRLWDLRSPNCQGIMHVSGSRPIAAFDPEGLIFGVGVNSDTIKLYDVRSFD 181
F + D+ L+ L + + + G ++ + + + L+ +
Sbjct: 126 FTGATEDRVA-LYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLF-TSNLS 183
Query: 182 KGPFSNFKFAAEKECDWTGIKFSADGKYILISTNG--SIIRTFDAYNGQ----CLQTLAG 235
G + E ++ S K + + T D +G L +
Sbjct: 184 SG---GLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDF 240
Query: 236 FLNNKGCPLEASFTPDSKYVISGSTDGRIHIW 267
+ PD + + +GR ++
Sbjct: 241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVF 272
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_4
Length = 265
Score = 27.1 bits (59), Expect = 8.5
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 53 GTNKRTVFSKKYGVDLIRFTHAKQAAIHASTKIDDTVRYLSLHDNKYIRYFP-GHTKKVN 111
G N +T F YG+D+ R T I+ V +D IR F TKK +
Sbjct: 96 GRNAKTSF---YGLDITR-DRLCSMIRKWQTLIEARV-DCKTNDGYIIRVFTLAFTKKTS 150
Query: 112 SLCLSPIDDTFISGSYDKTVR 132
+ S + S + +R
Sbjct: 151 AGKQSSTSTCYAKSSQVRAIR 171
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 26.9 bits (60), Expect = 8.5
Identities = 17/140 (12%), Positives = 34/140 (24%), Gaps = 9/140 (6%)
Query: 148 SGSRPIA-AFDPEGLIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTGIKFSAD 206
GS P + ++ ++ I G + FK GI D
Sbjct: 139 KGSYPSFITLGSDNALWFTENQNNAIGRITES----GDITEFKIPTPAS-GPVGITKGND 193
Query: 207 GKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISGSTDGRIHI 266
+ G+ I +G+ + N P + + +I
Sbjct: 194 DALWFVEIIGNKIGRITT-SGE-ITEFKIPTPNAR-PHAITAGAGIDLWFTEWGANKIGR 250
Query: 267 WNAEKGFKVCVLDADHPSPV 286
+ + + P
Sbjct: 251 LTSNNIIEEYPIQIKSAEPH 270
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118,
structural genomics, PSI-2, protein structure
initiative; 1.96A {Lactobacillus plantarum}
Length = 347
Score = 27.0 bits (60), Expect = 9.3
Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 18/153 (11%)
Query: 148 SGSRPIAAFDPEG-LIFGVGVNSDTIKLYDVRSFDKGPFSNFKFAAEKECDWTG------ 200
G R + F P+G F G S I + G F+ D+T
Sbjct: 187 FGPRHLV-FSPDGQYAFLAGELSSQIASLKYDT-QTGAFTQLGIVKTIPADYTAHNGAAA 244
Query: 201 IKFSADGKYILISTNG-SIIRTFD-AYNGQCLQTLAGFLNNKG-CPLEASFTPDSKYVIS 257
I+ S DG ++ +S G + + F +G TL ++ +G P + P +V+
Sbjct: 245 IRLSHDGHFLYVSNRGYNTLAVFAVTADGHL--TLIQQISTEGDFPRDFDLDPTEAFVVV 302
Query: 258 GS-TDGRIHIW--NAEKG-FKVCVLDADHPSPV 286
+ ++ + G + D P V
Sbjct: 303 VNQNTDNATLYARDLTSGKLSLLQKDVTVPEGV 335
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade
beta-propeller., struct genomics, PSI-2, protein
structure initiative; 2.00A {Methanococcus maripaludis}
Length = 330
Score = 26.9 bits (60), Expect = 9.7
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 17/68 (25%)
Query: 204 SADGKYILISTNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEAS-FTPDSKYVISGSTDG 262
S DG I+ +G+ F G +E+S ++ + GS DG
Sbjct: 232 SLDGHLYAINPDGTEKWRFKT----------------GKRIESSPVIGNTDTIYFGSYDG 275
Query: 263 RIHIWNAE 270
++ N +
Sbjct: 276 HLYAINPD 283
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller
fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB:
1v04_A* 3srg_A*
Length = 355
Score = 27.1 bits (59), Expect = 9.7
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 11/89 (12%)
Query: 200 GIKFSADGKYILI-STNGSIIRTFDAYNGQCLQTLAGFLNNKGCPLEASFTPDSKYVISG 258
GI S DGKY+ I I ++ + L L D+ V
Sbjct: 225 GINISPDGKYVYIAELLAHKIHVYEKHANWTL--------TPLRVLSFDTLVDNISV--D 274
Query: 259 STDGRIHIWNAEKGFKVCVLDADHPSPVQ 287
G + + G ++ DA++P +
Sbjct: 275 PVTGDLWVGCHPNGMRIFFYDAENPPGSE 303
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.423
Gapped
Lambda K H
0.267 0.0860 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,196,893
Number of extensions: 310921
Number of successful extensions: 2441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1070
Number of HSP's successfully gapped: 455
Length of query: 335
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 241
Effective length of database: 4,077,219
Effective search space: 982609779
Effective search space used: 982609779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.5 bits)