BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16318
(474 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BGQ7|SYAC_MOUSE Alanine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Aars PE=1 SV=1
Length = 968
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 123/223 (55%), Gaps = 32/223 (14%)
Query: 245 EAGILLDKSNFYAEQG-GQIYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDK 303
E G+++D + F E+ Q+ +G G DE ++ Y + + + G EA K
Sbjct: 431 EKGLVVDMNGFEEERRLAQLKSQG--KGAGDEDLIMLDIYAIEELRA--KGLEATDDSPK 486
Query: 304 SNFYAEQGGQIYDE-------GFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEG 356
N+ ++ G E K FVD V +G E G++LDK+ FYAEQGGQIYDEG
Sbjct: 487 YNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTCFYAEQGGQIYDEG 546
Query: 357 FMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGD 416
+++ V+D S+ + +F++ N + + V + T+ L+VGD
Sbjct: 547 YLVKVDDSSEDKT-------------------EFTVKNAQVRGGYVLHIGTIYGNLKVGD 587
Query: 417 KLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLV 459
+++L ID RRRP+MSNHTATHILN ALR VLG EADQKGSLV
Sbjct: 588 QVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLV 629
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 41/55 (74%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQ 57
+ I LG+ K +PGD AW LYDTYGFPVDLT L+ EEKGL VDM +E+ ++ AQ
Sbjct: 395 RKIQSLGDCKTIPGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMNGFEEERRLAQ 449
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 35/47 (74%)
Query: 228 LRFSYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVND 274
L K FVD V +G E G++LDK+ FYAEQGGQIYDEG+++ V+D
Sbjct: 507 LALRREKMFVDEVVTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDD 553
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 59 EPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKG-SNIVSYCGSKG 109
+P AG TSVEFCGGTHL + H G F I +EEAIAKG IV+ G++
Sbjct: 709 DPCGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEA 760
>sp|P50475|SYAC_RAT Alanine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Aars PE=1
SV=3
Length = 968
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 102/175 (58%), Gaps = 27/175 (15%)
Query: 292 SSGTEAGILLDKSNFYAEQGGQIYDE-------GFMSNKQFVDSVSSGTEAGILLDKSNF 344
+ G EA K N++++ G E K FVD V +G E G++LDK+ F
Sbjct: 475 AKGLEATDDSPKYNYHSDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTCF 534
Query: 345 YAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKL 404
YAEQGGQI+DEG+++ V+D S+ + +F++ N + + V
Sbjct: 535 YAEQGGQIFDEGYLVKVDDSSEDKT-------------------EFTVKNAQVRGGYVLH 575
Query: 405 LHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLV 459
+ T+ LRVGD+++L ID RRRP+MSNHTATHILN ALR VLG +ADQKGSLV
Sbjct: 576 IGTIYGNLRVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-DADQKGSLV 629
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 42/55 (76%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQ 57
+ I LG+ + +PGD AW LYDTYGFPVDLT L+ EEKGL VDM+ +E+ +K AQ
Sbjct: 395 RKIQSLGDCQTIPGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMDGFEEERKLAQ 449
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 35/47 (74%)
Query: 228 LRFSYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVND 274
L K FVD V +G E G++LDK+ FYAEQGGQI+DEG+++ V+D
Sbjct: 507 LALRREKMFVDEVVTGQECGVVLDKTCFYAEQGGQIFDEGYLVKVDD 553
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 59 EPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKG-SNIVSYCGSKG 109
+P AG TSVEFCGGTHL + H G F I +EEAIAKG IV+ G++
Sbjct: 709 DPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEA 760
>sp|Q8CFX8|SYAC_MESAU Alanine--tRNA ligase, cytoplasmic OS=Mesocricetus auratus GN=Aars
PE=2 SV=1
Length = 968
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 102/175 (58%), Gaps = 27/175 (15%)
Query: 292 SSGTEAGILLDKSNFYAEQGGQIYDE-------GFMSNKQFVDSVSSGTEAGILLDKSNF 344
+ G EA K N++++ G E K FV+ V +G E G++LDK+ F
Sbjct: 475 AKGLEATDDSPKYNYHSDSSGAYVFECTVATVLALRREKMFVEEVVTGQECGVVLDKTCF 534
Query: 345 YAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKL 404
YAEQGGQIYDEG+++ V+D S+ + +F++ N + + V
Sbjct: 535 YAEQGGQIYDEGYLVKVDDSSEDKT-------------------EFTVKNAQVRGGYVLH 575
Query: 405 LHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLV 459
+ T+ L+VGD+++L ID RRRP+MSNHTATHILN ALR VLG EADQKGSLV
Sbjct: 576 IGTIYGNLKVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLV 629
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 42/55 (76%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQ 57
+ I LG+ K +PGD AW LYDTYGFPVDLT L+ EEKGL VDM+ +E+ +K AQ
Sbjct: 395 RKIQSLGDCKTIPGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMDGFEEERKLAQ 449
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 35/47 (74%)
Query: 228 LRFSYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVND 274
L K FV+ V +G E G++LDK+ FYAEQGGQIYDEG+++ V+D
Sbjct: 507 LALRREKMFVEEVVTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDD 553
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 59 EPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKG-SNIVSYCGSKG 109
+P AG TSVEFCGGTHL + H G F I +EEAIAKG IV+ G++
Sbjct: 709 DPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEA 760
>sp|Q5RC02|SYAC_PONAB Alanine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=AARS PE=2 SV=1
Length = 968
Score = 125 bits (314), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 95/159 (59%), Gaps = 20/159 (12%)
Query: 301 LDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIG 360
LD S Y + K FV+ VS+G E G++LDK+ FYAEQGGQIYDEG+++
Sbjct: 491 LDSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTCFYAEQGGQIYDEGYLVK 550
Query: 361 VNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKL 420
V+D S+ + +F++ N + + V + T+ L+VGD++ L
Sbjct: 551 VDDSSEDK-------------------TEFTVKNAQVRGGYVLHIGTIYGDLKVGDQVWL 591
Query: 421 HIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLV 459
ID RRRPIMSNHTATHILN ALR VLG EADQKGSLV
Sbjct: 592 FIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLV 629
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 43/55 (78%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQ 57
+ I LG+SK +PGD AW LYDTYGFPVDLT L+ EEKGL VDM+ +E+ +K AQ
Sbjct: 395 RKIQSLGDSKTIPGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMDGFEEERKLAQ 449
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 35/41 (85%)
Query: 234 KQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVND 274
K FV+ VS+G E G++LDK+ FYAEQGGQIYDEG+++ V+D
Sbjct: 513 KMFVEEVSTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDD 553
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 59 EPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKG-SNIVSYCGSKG 109
+P AG TSVEFCGGTHL + H G F I +EEAIAKG IV+ G++
Sbjct: 709 DPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEA 760
>sp|P21894|SYAC_BOMMO Alanine--tRNA ligase, cytoplasmic OS=Bombyx mori PE=1 SV=1
Length = 967
Score = 125 bits (314), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 90/142 (63%), Gaps = 22/142 (15%)
Query: 318 GFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNL 377
NK+FV +SSG E G++LD+++FYAEQGGQI+DEG+M+ ++DE+
Sbjct: 511 ALRKNKEFVSEISSGQECGVILDRTSFYAEQGGQIFDEGYMVKIDDET------------ 558
Query: 378 EGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTAT 437
++F++ N++ K V + L+VGD L LHIDT RRR +M+NHT T
Sbjct: 559 ----------VEFTVKNVQVKGGYVLHAGKVEGILKVGDTLSLHIDTERRRLVMNNHTGT 608
Query: 438 HILNHALRFVLGPEADQKGSLV 459
H+LN+ LR VLG ++DQ+GSLV
Sbjct: 609 HVLNNVLRKVLGNDSDQRGSLV 630
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 1 MLQTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQ 57
+ +TI KL SK LPGDVAWRLYDTYGFP+DLTQLM EEKGL+VDME YE ++K++Q
Sbjct: 393 LYRTIEKLNNSKTLPGDVAWRLYDTYGFPIDLTQLMCEEKGLNVDMEGYEKSRKESQ 449
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 38/43 (88%)
Query: 233 NKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDE 275
NK+FV +SSG E G++LD+++FYAEQGGQI+DEG+M+ ++DE
Sbjct: 515 NKEFVSEISSGQECGVILDRTSFYAEQGGQIFDEGYMVKIDDE 557
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 60 PESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKG-SNIVSYCGSKGTFQSHSGSI 118
P++ G ETSVEFCGG+HL H+G++ I SEE IAKG IV+ G + + S+
Sbjct: 711 PDAPTGFETSVEFCGGSHLHRTSHIGEYVIVSEEGIAKGIRRIVAVTGPEAIKAINKLSV 770
Query: 119 NDEMVN 124
+ VN
Sbjct: 771 LENEVN 776
>sp|P49588|SYAC_HUMAN Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2
Length = 968
Score = 125 bits (314), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 95/159 (59%), Gaps = 20/159 (12%)
Query: 301 LDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIG 360
LD S Y + K FV+ VS+G E G++LDK+ FYAEQGGQIYDEG+++
Sbjct: 491 LDSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTCFYAEQGGQIYDEGYLVK 550
Query: 361 VNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKL 420
V+D S+ + +F++ N + + V + T+ L+VGD++ L
Sbjct: 551 VDDSSEDK-------------------TEFTVKNAQVRGGYVLHIGTIYGDLKVGDQVWL 591
Query: 421 HIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLV 459
ID RRRPIMSNHTATHILN ALR VLG EADQKGSLV
Sbjct: 592 FIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLV 629
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 43/55 (78%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQ 57
+ I LG+SK +PGD AW LYDTYGFPVDLT L+ EEKGL VDM+ +E+ +K AQ
Sbjct: 395 RKIQSLGDSKTIPGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMDGFEEERKLAQ 449
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 35/41 (85%)
Query: 234 KQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVND 274
K FV+ VS+G E G++LDK+ FYAEQGGQIYDEG+++ V+D
Sbjct: 513 KMFVEEVSTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDD 553
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 59 EPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKG-SNIVSYCGSKG 109
+P AG TSVEFCGGTHL + H G F I +EEAIAKG IV+ G++
Sbjct: 709 DPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEA 760
>sp|Q9VLM8|SYAC_DROME Alanine--tRNA ligase, cytoplasmic OS=Drosophila melanogaster
GN=Aats-ala PE=2 SV=1
Length = 966
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 83/136 (61%), Gaps = 22/136 (16%)
Query: 324 QFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYA 383
QFV+ ++SG +AGI+LDK+NFYAE GGQIYD+G ++ VNDE+ E + N G Y
Sbjct: 516 QFVNEITSGQKAGIVLDKTNFYAESGGQIYDQGALVKVNDEAN-EFLVDRVYNRGG--YI 572
Query: 384 LPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATHILNHA 443
L I + + TL+VGD+L+LHID RR M NH+ATH LNH
Sbjct: 573 LHIGV-------------------VEGTLKVGDELELHIDVERRWLTMKNHSATHALNHC 613
Query: 444 LRFVLGPEADQKGSLV 459
L VLG + +QKGSLV
Sbjct: 614 LLQVLGKDTEQKGSLV 629
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 41/51 (80%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAK 53
+TI KLG +PGDVAWRLYDTYGFPVDLTQLM EEK L +DM+ YE AK
Sbjct: 394 RTIEKLGNQTTIPGDVAWRLYDTYGFPVDLTQLMAEEKSLKIDMDGYEAAK 444
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 44/60 (73%), Gaps = 4/60 (6%)
Query: 228 LRFSYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDEGT--VVGLRYNK 285
LRF QFV+ ++SG +AGI+LDK+NFYAE GGQIYD+G ++ VNDE +V YN+
Sbjct: 511 LRFE--NQFVNEITSGQKAGIVLDKTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNR 568
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 12/117 (10%)
Query: 4 TIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGL-SVDMEVYEDAKK-------- 54
TI ++ +++ L ++ ++ Y L L + +GL SV EVY D +
Sbjct: 645 TIEQVSKTEQLTKEMVYKNVPIYAKESKLA-LAKKIRGLRSVFDEVYPDPVRVISFGVPV 703
Query: 55 -KAQSEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKG-SNIVSYCGSKG 109
+ + P+S+AG +TSVEFCGGTHL + H+ DF ISSEEAIAKG IV+ G +
Sbjct: 704 DELEQNPDSEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEA 760
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 7/71 (9%)
Query: 265 DEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM---- 320
D + GV + +V LR+ QFV+ ++SG +AGI+LDK+NFYAE GGQIYD+G +
Sbjct: 496 DSAYNYGVCN-SKIVALRFENQFVNEITSGQKAGIVLDKTNFYAESGGQIYDQGALVKVN 554
Query: 321 --SNKQFVDSV 329
+N+ VD V
Sbjct: 555 DEANEFLVDRV 565
>sp|O01541|SYAC_CAEEL Alanine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans
GN=aars-2 PE=2 SV=1
Length = 968
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 81/136 (59%), Gaps = 23/136 (16%)
Query: 324 QFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYA 383
+FVD +++G E ILLD++NFYAEQGGQIYD G + VNDES
Sbjct: 518 KFVDQLAAGEEGAILLDRTNFYAEQGGQIYDVGVLTKVNDESN----------------- 560
Query: 384 LPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATHILNHA 443
+F++SN + + + L+ + + VGD++ D R++ IM NHT TH+LN+A
Sbjct: 561 -----EFNVSNCQVRGGYIVLVGSAEGSFSVGDQVNERFDEDRKQLIMKNHTGTHVLNYA 615
Query: 444 LRFVLGPEADQKGSLV 459
LR VL ++DQKGSLV
Sbjct: 616 LRKVLA-DSDQKGSLV 630
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 14 LPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKA 56
PGDV+WRLYDTYGFP DLTQLM EEKGLSVD +E+A++KA
Sbjct: 407 FPGDVSWRLYDTYGFPADLTQLMAEEKGLSVDNTAFEEARRKA 449
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 211 TGLGDLSQTKHTPFV-KRLRFSYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 269
TG G + K P V K L + +FVD +++G E ILLD++NFYAEQGGQIYD G +
Sbjct: 493 TGEGSDAVYKFEPCVGKILAIRRDGKFVDQLAAGEEGAILLDRTNFYAEQGGQIYDVGVL 552
Query: 270 IGVNDE 275
VNDE
Sbjct: 553 TKVNDE 558
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 60 PESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKG-SNIVSYCGSKG 109
P+++ G T+VEFCGGTHL H+G I+SEEAIAKG IV+ G +
Sbjct: 711 PDAEEGQNTTVEFCGGTHLQNVSHIGRIVIASEEAIAKGIRRIVALTGPEA 761
>sp|Q54Y20|SYAC_DICDI Alanine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=alaS PE=2 SV=1
Length = 946
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 112/221 (50%), Gaps = 27/221 (12%)
Query: 247 GILLDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILL----- 301
G +D + AE+ D G+ + + + + K+ ++ G EA L
Sbjct: 415 GFPIDLTTIMAEEKNYKVDIKGYEGLCEAQSEIDRKRQKEKKVELTLGAEANAWLKNNDI 474
Query: 302 ---DKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 358
D S Y + Q + + K+FVD+ GT G++L+ SNFYAEQGGQIYD G +
Sbjct: 475 KPTDDSFKYKQHEIQSVIKAIWNGKEFVDTAPKGTLIGVVLENSNFYAEQGGQIYDIGQL 534
Query: 359 IGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKL 418
++D+ + +++ K +F + L + L +L+VGD++
Sbjct: 535 SFIDDQ-------KTAFDVKDCK----VFGGYVLH--------IGYLSYECDSLKVGDRV 575
Query: 419 KLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLV 459
+L +D RR PIMSNHT+TH++N+AL+ +LG DQ+GS V
Sbjct: 576 ELTVDYTRRSPIMSNHTSTHMVNYALKNILGDGIDQRGSFV 616
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 234 KQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNKQF 287
K+FVD+ GT G++L+ SNFYAEQGGQIYD G + ++D+ T ++ K F
Sbjct: 499 KEFVDTAPKGTLIGVVLENSNFYAEQGGQIYDIGQLSFIDDQKTAFDVKDCKVF 552
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 2 LQTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPE 61
+ + K + L + A+ L YGFP+DLT +M EEK VD++ YE +AQSE +
Sbjct: 390 FEKMIKKSVNNTLSAENAYFLSTCYGFPIDLTTIMAEEKNYKVDIKGYE-GLCEAQSEID 448
Query: 62 SQAGMETSVEFCGGTH 77
+ E VE G
Sbjct: 449 RKRQKEKKVELTLGAE 464
Score = 39.7 bits (91), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 60 PESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKG-SNIVSYCGSKGTFQSHSGSI 118
P + S+EFCGGTHL+ F I+SEE + G IV+ GS+ + + +
Sbjct: 697 PTNPEWANYSIEFCGGTHLSNTKQAELFTITSEETLGAGVRRIVAVTGSEA---ASAIEL 753
Query: 119 NDEMVNKYPSLYRL 132
N E+ ++ + +L
Sbjct: 754 NKELEVRFNNALKL 767
>sp|Q7VLK0|SYA_HAEDU Alanine--tRNA ligase OS=Haemophilus ducreyi (strain 35000HP / ATCC
700724) GN=alaS PE=3 SV=1
Length = 874
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 26/143 (18%)
Query: 318 GFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNL 377
SN Q VD V SG A ++LDK+ FYAE GGQ+ D G +
Sbjct: 471 ALFSNGQAVDKVQSGESAVVVLDKTPFYAEMGGQVGDSGLITTA---------------- 514
Query: 378 EGSKYALPIFLQFSLSNLKKKKKLVKLL-HTLSHTLRVGDKLKLHIDTARRRPIMSNHTA 436
F QF++++ +K ++ + +S +L +GD + +D ARR+ I +NH+A
Sbjct: 515 ---------FCQFAVADTQKYGQVFGHIGQVVSGSLAIGDIISAQVDIARRQAITANHSA 565
Query: 437 THILNHALRFVLGPEADQKGSLV 459
TH+L+ ALR VLG QKGSLV
Sbjct: 566 THLLHSALRQVLGEHVVQKGSLV 588
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 273 NDEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMS 321
N E V+ L N Q VD V SG A ++LDK+ FYAE GGQ+ D G ++
Sbjct: 464 NAEAKVIALFSNGQAVDKVQSGESAVVVLDKTPFYAEMGGQVGDSGLIT 512
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 10 ESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYE 50
E++ L G+VA++LYDTYGFP+DLT + E+ + +D +E
Sbjct: 385 ENQTLSGEVAFKLYDTYGFPLDLTADVCRERDIVIDEASFE 425
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 233 NKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 269
N Q VD V SG A ++LDK+ FYAE GGQ+ D G +
Sbjct: 475 NGQAVDKVQSGESAVVVLDKTPFYAEMGGQVGDSGLI 511
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 69 SVEFCGGTHLAMAHHVGDFCISSEEAIAKG 98
S+E CGGTH+ +G F + SE A+A G
Sbjct: 661 SIELCGGTHVKHTGEIGLFKLISESAVAAG 690
>sp|Q5A8K2|SYA_CANAL Alanine--tRNA ligase OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=ALA1 PE=1 SV=1
Length = 969
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 78/146 (53%), Gaps = 30/146 (20%)
Query: 318 GFMSNKQFVDSVSSGT-EAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVN 376
G +FVDS+ + + GILLDK+ FYAEQGGQ YD G ++
Sbjct: 522 GIYDGSKFVDSIEDPSIQYGILLDKTPFYAEQGGQEYDTGKLV----------------- 564
Query: 377 LEGSKYALPIFLQFSLSNLKKKKKLVKLLHT---LSHTLRVGDKLKLHIDTARRRPIMSN 433
++G +F+++N++ V LHT + L VGD++ D RR PI +N
Sbjct: 565 IDGKS-------EFNVANVQVYAGYV--LHTGNIVDGKLNVGDEIIATYDELRRWPIRNN 615
Query: 434 HTATHILNHALRFVLGPEADQKGSLV 459
HT THILN ALR VLG DQKGSLV
Sbjct: 616 HTGTHILNFALREVLGDGVDQKGSLV 641
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 37/53 (69%)
Query: 5 IAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQ 57
IA + L G WRLYDTYGFPVDLT+LM EE GL +D E +E AK++++
Sbjct: 419 IASKTPEQTLSGKDVWRLYDTYGFPVDLTRLMAEEAGLKIDEEGFERAKEESR 471
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 15/84 (17%)
Query: 24 DTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQAGMETSVEFCGGTHLAMAHH 83
+TY PV + + G+SVD ++P + E S+EFCGGTH+A
Sbjct: 700 ETYPDPVRVVSI-----GVSVD---------DLLADPTNTKWHEISIEFCGGTHVAKTGD 745
Query: 84 VGDFCISSEEAIAKG-SNIVSYCG 106
+ D I E IAKG IV+ G
Sbjct: 746 IKDLVIIEESGIAKGIRRIVAVTG 769
>sp|A8ANQ1|SYA_CITK8 Alanine--tRNA ligase OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=alaS PE=3 SV=1
Length = 875
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 26/135 (19%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
VD++S+G EA ++LD++ FYAE GGQ+ D+G L+G+ +A
Sbjct: 480 VDAISAGQEAVVVLDQTPFYAESGGQVGDKG-------------------ELKGAGFA-- 518
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSH-TLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
F++S+ +K + + + TLS +L+VGD ++ +D ARR I NH+ATH+++ AL
Sbjct: 519 ----FAVSDTQKYGQAIGHIGTLSTGSLKVGDAVQADVDDARRARIRLNHSATHLMHAAL 574
Query: 445 RFVLGPEADQKGSLV 459
R +LG QKGSLV
Sbjct: 575 RQILGTHVAQKGSLV 589
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 15/162 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ +
Sbjct: 380 EELAKL-SGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++ + EF G HL + V + + +AI+ G V
Sbjct: 439 ASGFGADYNAMIRVDGASEFKGYDHLELNGKVTALFVDGKAVDAISAGQEAVVVLDQTPF 498
Query: 111 FQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLS 152
+ G + D+ K F QKY Q ++ LS
Sbjct: 499 YAESGGQVGDKGELKGAGF--AFAVSDTQKYGQAIGHIGTLS 538
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 276 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEA 335
G V L + + VD++S+G EA ++LD++ FYAE GGQ+ D+G + F +VS +
Sbjct: 468 GKVTALFVDGKAVDAISAGQEAVVVLDQTPFYAESGGQVGDKGELKGAGFAFAVSDTQKY 527
Query: 336 G 336
G
Sbjct: 528 G 528
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGV 272
VD++S+G EA ++LD++ FYAE GGQ+ D+G + G
Sbjct: 480 VDAISAGQEAVVVLDQTPFYAESGGQVGDKGELKGA 515
>sp|P40825|SYA_YEAST Alanine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ALA1 PE=1 SV=3
Length = 983
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 74/137 (54%), Gaps = 24/137 (17%)
Query: 324 QFVDSVS-SGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKY 382
FVD ++ G + GI+LDK+ FYAEQGGQ YD G ++ ++D ++ + L N
Sbjct: 537 NFVDEITEPGKKYGIILDKTCFYAEQGGQEYDTGKIV-IDDAAEFNVENVQLYN------ 589
Query: 383 ALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATHILNH 442
F +L++ K L VGDK+ D RR PI +NHT THILN
Sbjct: 590 ----GFVFHTGSLEEGK------------LSVGDKIIASFDELRRFPIKNNHTGTHILNF 633
Query: 443 ALRFVLGPEADQKGSLV 459
AL+ LG + DQKGSLV
Sbjct: 634 ALKETLGNDVDQKGSLV 650
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 36/47 (76%)
Query: 10 ESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKA 56
ESK L G WRLYDTYGFPVDLT+LM EE+GL +D +E AK+++
Sbjct: 434 ESKTLDGKQVWRLYDTYGFPVDLTELMAEEQGLKIDGPGFEKAKQES 480
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 228 LRFSYNKQFVDSVS-SGTEAGILLDKSNFYAEQGGQIYDEGFMI 270
L+ FVD ++ G + GI+LDK+ FYAEQGGQ YD G ++
Sbjct: 530 LKLHDGTNFVDEITEPGKKYGIILDKTCFYAEQGGQEYDTGKIV 573
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 58 SEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKG-SNIVSYCGSKG 109
+ P ++ + S+EFCGGTH+ + F I E IAKG IV+ G++
Sbjct: 729 ANPANEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEA 781
>sp|A6TCV9|SYA_KLEP7 Alanine--tRNA ligase OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=alaS PE=3 SV=1
Length = 875
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 79/135 (58%), Gaps = 26/135 (19%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
VDSVS+G EA ++LD++ FYAE GGQ+ D+G L+G+ ++
Sbjct: 480 VDSVSAGQEAVVILDQTPFYAESGGQVGDKG-------------------ELKGAGFS-- 518
Query: 386 IFLQFSLSNLKKKKKLVKLLHTL-SHTLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
F++S+ +K + + + + S +L+VGD ++ +D ARR I NH+ATH+++ AL
Sbjct: 519 ----FAVSDTQKYGQAIGHIGKVASGSLKVGDAVQADVDEARRHRIRLNHSATHLMHAAL 574
Query: 445 RFVLGPEADQKGSLV 459
R VLG QKGSLV
Sbjct: 575 RQVLGTHVAQKGSLV 589
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 13 VLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQAG------- 65
L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ + +G
Sbjct: 389 TLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARESSGFGADYNA 448
Query: 66 ---METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGTFQSHSGSIND 120
++ + EF G HL + V I + ++++ G V + G + D
Sbjct: 449 MIRVDGASEFKGYDHLELNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGD 508
Query: 121 E 121
+
Sbjct: 509 K 509
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 276 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEA 335
G V L + + VDSVS+G EA ++LD++ FYAE GGQ+ D+G + F +VS +
Sbjct: 468 GKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDKGELKGAGFSFAVSDTQKY 527
Query: 336 G 336
G
Sbjct: 528 G 528
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGV 272
VDSVS+G EA ++LD++ FYAE GGQ+ D+G + G
Sbjct: 480 VDSVSAGQEAVVILDQTPFYAESGGQVGDKGELKGA 515
Score = 35.4 bits (80), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 69 SVEFCGGTHLAMAHHVGDFCISSEEAIAKGSNIVSYC---GSKGTFQSHSGSIND 120
S E CGGTH A +G F I+SE A G + G+ + S +ND
Sbjct: 662 STELCGGTHAARTGDIGLFRITSESGTAAGVRRIEAVTGEGAMAILHAQSDQLND 716
>sp|B3H177|SYA_ACTP7 Alanine--tRNA ligase OS=Actinobacillus pleuropneumoniae serotype 7
(strain AP76) GN=alaS PE=3 SV=1
Length = 874
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 31/153 (20%)
Query: 318 GFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNL 377
G SN + VD++ SG A I+LD++ FYAE GGQ+ D G L++
Sbjct: 471 GLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGDSG-----------------LIST 513
Query: 378 EGSKYALPIFLQFSLSNLKKKKKLVKLLHTL-SHTLRVGDKLKLHIDTARRRPIMSNHTA 436
E F++++ +K ++ + L S +L +GDK+ +D RR I +NH+A
Sbjct: 514 E--------ICNFAVNDTQKYGQVFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSA 565
Query: 437 THILNHALRFVLGPEADQKGSLVYRYHLHENIM 469
TH+L+ ALR VLG QKGSLV ENI+
Sbjct: 566 THLLHSALREVLGDHVAQKGSLV-----SENIL 593
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 253 SNFYAEQGGQIYDEGF--MIGVND---EGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFY 307
SNF A+ I EG IG ++ + T+VGL N + VD++ SG A I+LD++ FY
Sbjct: 439 SNFGADYNNVIKVEGQTDFIGYDNLAAQATIVGLFSNGKAVDTIQSGESAVIILDQTPFY 498
Query: 308 AEQGGQIYDEGFMSNK 323
AE GGQ+ D G +S +
Sbjct: 499 AEMGGQVGDSGLISTE 514
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 10 ESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSE 59
E+ L G+VA++LYDTYGFP+DLT + E+ +++D +E A+ AQ E
Sbjct: 385 ENNTLSGEVAFKLYDTYGFPLDLTADVCREREITIDEAGFE-AEMTAQRE 433
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 233 NKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 269
N + VD++ SG A I+LD++ FYAE GGQ+ D G +
Sbjct: 475 NGKAVDTIQSGESAVIILDQTPFYAEMGGQVGDSGLI 511
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 67 ETSVEFCGGTHLAMAHHVGDFCISSEEAIAKG 98
E S+E CGGTH+ +G F + SE A+A G
Sbjct: 659 EFSIELCGGTHVQRTGDIGLFKLVSEGAVAAG 690
>sp|Q7UBU3|SYA_SHIFL Alanine--tRNA ligase OS=Shigella flexneri GN=alaS PE=3 SV=1
Length = 876
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 31/154 (20%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN----------------------- 516
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSH-TLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
F++ + +K + + + L+ +L+VGD ++ ID ARR I NH+ATH+++ AL
Sbjct: 517 --FSFAVEDTQKYGQAIGHIGKLAAGSLKVGDAVQADIDEARRARIRLNHSATHLMHAAL 574
Query: 445 RFVLGPEADQKGSL----VYRYHL-HENIMECEE 473
R VLG QKGSL V R+ H M+ EE
Sbjct: 575 RQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEE 608
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ +
Sbjct: 380 EELAKL-SGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++++ EF G HL + V + + +AI G V
Sbjct: 439 ASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPF 498
Query: 111 FQSHSGSINDE 121
+ G + D+
Sbjct: 499 YAESGGQVGDK 509
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 276 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQF 325
G V L + + VD++++G EA ++LD++ FYAE GGQ+ D+G + F
Sbjct: 468 GKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANF 517
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 273
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN 516
>sp|Q0T1C3|SYA_SHIF8 Alanine--tRNA ligase OS=Shigella flexneri serotype 5b (strain 8401)
GN=alaS PE=3 SV=1
Length = 876
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 31/154 (20%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN----------------------- 516
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSH-TLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
F++ + +K + + + L+ +L+VGD ++ ID ARR I NH+ATH+++ AL
Sbjct: 517 --FSFAVEDTQKYGQAIGHIGKLAAGSLKVGDAVQADIDEARRARIRLNHSATHLMHAAL 574
Query: 445 RFVLGPEADQKGSL----VYRYHL-HENIMECEE 473
R VLG QKGSL V R+ H M+ EE
Sbjct: 575 RQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEE 608
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ +
Sbjct: 380 EELAKL-SGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++++ EF G HL + V + + +AI G V
Sbjct: 439 ASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPF 498
Query: 111 FQSHSGSINDE 121
+ G + D+
Sbjct: 499 YAESGGQVGDK 509
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 276 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQF 325
G V L + + VD++++G EA ++LD++ FYAE GGQ+ D+G + F
Sbjct: 468 GKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANF 517
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 273
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN 516
>sp|Q0TEI3|SYA_ECOL5 Alanine--tRNA ligase OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=alaS PE=3 SV=1
Length = 876
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 31/154 (20%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN----------------------- 516
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSH-TLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
F++ + +K + + + L+ +L+VGD ++ +D ARR I NH+ATH+++ AL
Sbjct: 517 --FSFAVEDTQKYGQAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHLMHAAL 574
Query: 445 RFVLGPEADQKGSL----VYRYHL-HENIMECEE 473
R VLG QKGSL V R+ H M+ EE
Sbjct: 575 RQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEE 608
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ +
Sbjct: 380 EELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++++ EF G HL + V + + +AI G V
Sbjct: 439 ASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPF 498
Query: 111 FQSHSGSINDE 121
+ G + D+
Sbjct: 499 YAESGGQVGDK 509
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 276 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQF 325
G V L + + VD++++G EA ++LD++ FYAE GGQ+ D+G + F
Sbjct: 468 GKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANF 517
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 273
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN 516
>sp|Q1R804|SYA_ECOUT Alanine--tRNA ligase OS=Escherichia coli (strain UTI89 / UPEC)
GN=alaS PE=3 SV=1
Length = 876
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 31/154 (20%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN----------------------- 516
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSH-TLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
F++ + +K + + + L+ +L+VGD ++ +D ARR I NH+ATH+++ AL
Sbjct: 517 --FSFAVEDTQKYGQAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHLMHAAL 574
Query: 445 RFVLGPEADQKGSL----VYRYHL-HENIMECEE 473
R VLG QKGSL V R+ H M+ EE
Sbjct: 575 RQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEE 608
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL L G+ A+RLYDTYGFPVDLT + E+ + VD ++ A ++ +
Sbjct: 380 EELAKL-SGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFDAAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++++ EF G HL + V + + +AI G V
Sbjct: 439 ASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPF 498
Query: 111 FQSHSGSINDE 121
+ G + D+
Sbjct: 499 YAESGGQVGDK 509
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 276 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQF 325
G V L + + VD++++G EA ++LD++ FYAE GGQ+ D+G + F
Sbjct: 468 GKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANF 517
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 273
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN 516
>sp|A1AEN7|SYA_ECOK1 Alanine--tRNA ligase OS=Escherichia coli O1:K1 / APEC GN=alaS PE=3
SV=1
Length = 876
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 31/154 (20%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN----------------------- 516
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSH-TLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
F++ + +K + + + L+ +L+VGD ++ +D ARR I NH+ATH+++ AL
Sbjct: 517 --FSFAVEDTQKYGQAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHLMHAAL 574
Query: 445 RFVLGPEADQKGSL----VYRYHL-HENIMECEE 473
R VLG QKGSL V R+ H M+ EE
Sbjct: 575 RQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEE 608
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL L G+ A+RLYDTYGFPVDLT + E+ + VD ++ A ++ +
Sbjct: 380 EELAKL-SGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFDAAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++++ EF G HL + V + + +AI G V
Sbjct: 439 ASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPF 498
Query: 111 FQSHSGSINDE 121
+ G + D+
Sbjct: 499 YAESGGQVGDK 509
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 276 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQF 325
G V L + + VD++++G EA ++LD++ FYAE GGQ+ D+G + F
Sbjct: 468 GKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANF 517
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 273
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN 516
>sp|A8A3H4|SYA_ECOHS Alanine--tRNA ligase OS=Escherichia coli O9:H4 (strain HS) GN=alaS
PE=3 SV=1
Length = 876
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 31/154 (20%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN----------------------- 516
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSH-TLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
F++ + +K + + + L+ +L+VGD ++ +D ARR I NH+ATH+++ AL
Sbjct: 517 --FSFAVEDTQKYGQAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHLMHAAL 574
Query: 445 RFVLGPEADQKGSL----VYRYHL-HENIMECEE 473
R VLG QKGSL V R+ H M+ EE
Sbjct: 575 RQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEE 608
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ +
Sbjct: 380 EELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++++ EF G HL + V + + +AI G V
Sbjct: 439 ASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPF 498
Query: 111 FQSHSGSINDE 121
+ G + D+
Sbjct: 499 YAESGGQVGDK 509
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 276 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQF 325
G V L + + VD++++G EA ++LD++ FYAE GGQ+ D+G + F
Sbjct: 468 GKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANF 517
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 273
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN 516
>sp|Q3YYG6|SYA_SHISS Alanine--tRNA ligase OS=Shigella sonnei (strain Ss046) GN=alaS PE=3
SV=1
Length = 876
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 31/154 (20%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN----------------------- 516
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSH-TLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
F++ + +K + + + L+ +L+VGD ++ +D ARR I NH+ATH+++ AL
Sbjct: 517 --FSFAVEDTQKYGQAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHLMHAAL 574
Query: 445 RFVLGPEADQKGSL----VYRYHL-HENIMECEE 473
R VLG QKGSL V R+ H M+ EE
Sbjct: 575 RQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEE 608
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ +
Sbjct: 380 EELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++++ EF G HL + V + + +AI G V
Sbjct: 439 ASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPF 498
Query: 111 FQSHSGSINDE 121
+ G + D+
Sbjct: 499 YAESGGQVGDK 509
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 276 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQF 325
G V L + + VD++++G EA ++LD++ FYAE GGQ+ D+G + F
Sbjct: 468 GKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANF 517
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 273
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN 516
>sp|A7ZQC5|SYA_ECO24 Alanine--tRNA ligase OS=Escherichia coli O139:H28 (strain E24377A /
ETEC) GN=alaS PE=3 SV=1
Length = 876
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 31/154 (20%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN----------------------- 516
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSH-TLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
F++ + +K + + + L+ +L+VGD ++ +D ARR I NH+ATH+++ AL
Sbjct: 517 --FSFAVEDTQKYGQAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHLMHAAL 574
Query: 445 RFVLGPEADQKGSL----VYRYHL-HENIMECEE 473
R VLG QKGSL V R+ H M+ EE
Sbjct: 575 RQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEE 608
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ +
Sbjct: 380 EELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++++ EF G HL + V + + +AI G V
Sbjct: 439 ASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPF 498
Query: 111 FQSHSGSINDE 121
+ G + D+
Sbjct: 499 YAESGGQVGDK 509
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 276 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQF 325
G V L + + VD++++G EA ++LD++ FYAE GGQ+ D+G + F
Sbjct: 468 GKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANF 517
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 273
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN 516
>sp|B2U049|SYA_SHIB3 Alanine--tRNA ligase OS=Shigella boydii serotype 18 (strain CDC
3083-94 / BS512) GN=alaS PE=3 SV=1
Length = 876
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 31/154 (20%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN----------------------- 516
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSH-TLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
F++ + +K + + + L+ +L+VGD ++ +D ARR I NH+ATH+++ AL
Sbjct: 517 --FSFAVEDTQKYGQAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHLMHAAL 574
Query: 445 RFVLGPEADQKGSL----VYRYHL-HENIMECEE 473
R VLG QKGSL V R+ H M+ EE
Sbjct: 575 RQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEE 608
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ +
Sbjct: 380 EELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++++ EF G HL + V + + +AI G V
Sbjct: 439 ASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPF 498
Query: 111 FQSHSGSINDE 121
+ G + D+
Sbjct: 499 YAESGGQVGDK 509
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 276 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQF 325
G V L + + VD++++G EA ++LD++ FYAE GGQ+ D+G + F
Sbjct: 468 GKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANF 517
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 273
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN 516
>sp|P00957|SYA_ECOLI Alanine--tRNA ligase OS=Escherichia coli (strain K12) GN=alaS PE=1
SV=2
Length = 876
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 31/154 (20%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN----------------------- 516
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSH-TLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
F++ + +K + + + L+ +L+VGD ++ +D ARR I NH+ATH+++ AL
Sbjct: 517 --FSFAVEDTQKYGQAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHLMHAAL 574
Query: 445 RFVLGPEADQKGSL----VYRYHL-HENIMECEE 473
R VLG QKGSL V R+ H M+ EE
Sbjct: 575 RQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEE 608
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ +
Sbjct: 380 EELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++++ EF G HL + V + + +AI G V
Sbjct: 439 ASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPF 498
Query: 111 FQSHSGSINDE 121
+ G + D+
Sbjct: 499 YAESGGQVGDK 509
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 276 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQF 325
G V L + + VD++++G EA ++LD++ FYAE GGQ+ D+G + F
Sbjct: 468 GKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANF 517
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 273
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN 516
>sp|B1XCM5|SYA_ECODH Alanine--tRNA ligase OS=Escherichia coli (strain K12 / DH10B)
GN=alaS PE=3 SV=1
Length = 876
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 31/154 (20%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN----------------------- 516
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSH-TLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
F++ + +K + + + L+ +L+VGD ++ +D ARR I NH+ATH+++ AL
Sbjct: 517 --FSFAVEDTQKYGQAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHLMHAAL 574
Query: 445 RFVLGPEADQKGSL----VYRYHL-HENIMECEE 473
R VLG QKGSL V R+ H M+ EE
Sbjct: 575 RQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEE 608
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ +
Sbjct: 380 EELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++++ EF G HL + V + + +AI G V
Sbjct: 439 ASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPF 498
Query: 111 FQSHSGSINDE 121
+ G + D+
Sbjct: 499 YAESGGQVGDK 509
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 276 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQF 325
G V L + + VD++++G EA ++LD++ FYAE GGQ+ D+G + F
Sbjct: 468 GKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANF 517
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 273
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN 516
>sp|B1IUY2|SYA_ECOLC Alanine--tRNA ligase OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=alaS PE=3 SV=1
Length = 876
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 31/154 (20%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN----------------------- 516
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSH-TLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
F++ + +K + + + L+ +L+VGD ++ +D ARR I NH+ATH+++ AL
Sbjct: 517 --FSFAVEDTQKYGQAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHLMHAAL 574
Query: 445 RFVLGPEADQKGSL----VYRYHL-HENIMECEE 473
R VLG QKGSL V R+ H M+ EE
Sbjct: 575 RQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEE 608
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ +
Sbjct: 380 EELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++++ EF G HL + V + + +AI G V
Sbjct: 439 ASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPF 498
Query: 111 FQSHSGSINDE 121
+ G + D+
Sbjct: 499 YAESGGQVGDK 509
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 276 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQF 325
G V L + + VD++++G EA ++LD++ FYAE GGQ+ D+G + F
Sbjct: 468 GKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANF 517
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 273
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN 516
>sp|B1LQ15|SYA_ECOSM Alanine--tRNA ligase OS=Escherichia coli (strain SMS-3-5 / SECEC)
GN=alaS PE=3 SV=1
Length = 876
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 31/154 (20%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN----------------------- 516
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSH-TLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
F++ + +K + + + L+ +L+VGD ++ +D ARR I NH+ATH+++ AL
Sbjct: 517 --FSFAVEDTQKYGQAIGHIGKLATGSLKVGDAVQADVDEARRARIRLNHSATHLMHAAL 574
Query: 445 RFVLGPEADQKGSL----VYRYHL-HENIMECEE 473
R VLG QKGSL V R+ H M+ EE
Sbjct: 575 RQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEE 608
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ +
Sbjct: 380 EELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++++ EF G HL + V + + +AI G V
Sbjct: 439 ASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPF 498
Query: 111 FQSHSGSINDE 121
+ G + D+
Sbjct: 499 YAESGGQVGDK 509
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 276 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQF 325
G V L + + VD++++G EA ++LD++ FYAE GGQ+ D+G + F
Sbjct: 468 GKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANF 517
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 273
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN 516
>sp|A4G2S9|SYA_HERAR Alanine--tRNA ligase OS=Herminiimonas arsenicoxydans GN=alaS PE=3
SV=1
Length = 869
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 79/161 (49%), Gaps = 38/161 (23%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
V + G ++LD + FYAE GGQ+ D+GF V+ EG
Sbjct: 474 VQQLKEGQAGIVVLDTTPFYAESGGQVGDQGF-----------------VSAEG------ 510
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSH--TLRVGDKLKLHIDTARRRPIMSNHTATHILNHA 443
+QF + + +K K V H + TL+VGDK++ +D ARR M NH+ THI++ A
Sbjct: 511 --VQFGVEDTQKIKADVYGHHGVQTQGTLKVGDKVQAAVDGARRAATMRNHSVTHIMHKA 568
Query: 444 LRFVLGPEADQKGSLV----YRYHL-------HENIMECEE 473
LR VLG QKGSLV R+ HE I+E E+
Sbjct: 569 LREVLGEHVQQKGSLVDAEKTRFDFAHNAPVTHEQILEIEK 609
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 9 GESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDA--KKKAQSEPESQAGM 66
G KVLPG+VA++L+DT+GFP+DL+ + E G+SVD + A K+KA + M
Sbjct: 380 GGVKVLPGEVAFKLHDTFGFPLDLSADVCREAGVSVDEAGFAAAMEKQKAAGRAAGKFKM 439
Query: 67 ETSVEFCG 74
E +VE+ G
Sbjct: 440 ERAVEYTG 447
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNKQF 287
V + G ++LD + FYAE GGQ+ D+GF V+ EG G+ ++
Sbjct: 474 VQQLKEGQAGIVVLDTTPFYAESGGQVGDQGF---VSAEGVQFGVEDTQKI 521
>sp|A4WDQ6|SYA_ENT38 Alanine--tRNA ligase OS=Enterobacter sp. (strain 638) GN=alaS PE=3
SV=1
Length = 875
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 79/135 (58%), Gaps = 26/135 (19%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
VDS+S+G +A ++LDK+ FYAE GGQ+ D+G L+G+ ++
Sbjct: 480 VDSISAGQDAVVVLDKTPFYAESGGQVGDKG-------------------ELKGNGFS-- 518
Query: 386 IFLQFSLSNLKKKKKLVKLLHTL-SHTLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
F++S+ +K + + + L S +L+VG+ ++ +D ARR I NH+ATH+++ AL
Sbjct: 519 ----FAVSDTQKYGQAIGHIGKLASGSLKVGEGVQAEVDEARRERIRLNHSATHLMHAAL 574
Query: 445 RFVLGPEADQKGSLV 459
R VLG QKGSLV
Sbjct: 575 RDVLGTHVAQKGSLV 589
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 13 VLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQAG------- 65
L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ + +G
Sbjct: 389 TLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARESSGFGADYNA 448
Query: 66 ---METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGTFQSHSGSIND 120
++++ EF G L + V + + ++I+ G + V + G + D
Sbjct: 449 MIRVDSASEFQGYDRLELNAKVTALFVDGKAVDSISAGQDAVVVLDKTPFYAESGGQVGD 508
Query: 121 E 121
+
Sbjct: 509 K 509
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 278 VVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEAG 336
V L + + VDS+S+G +A ++LDK+ FYAE GGQ+ D+G + F +VS + G
Sbjct: 470 VTALFVDGKAVDSISAGQDAVVVLDKTPFYAESGGQVGDKGELKGNGFSFAVSDTQKYG 528
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 28/35 (80%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIG 271
VDS+S+G +A ++LDK+ FYAE GGQ+ D+G + G
Sbjct: 480 VDSISAGQDAVVVLDKTPFYAESGGQVGDKGELKG 514
>sp|Q8X3W8|SYA_ECO57 Alanine--tRNA ligase OS=Escherichia coli O157:H7 GN=alaS PE=3 SV=2
Length = 876
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 29/153 (18%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N FS +V + KY
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN--------FSFVVE-DTQKYGQA 530
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATHILNHALR 445
I L+ + +L+VGD ++ +D ARR I NH+ATH+++ ALR
Sbjct: 531 IGHIGKLA---------------AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALR 575
Query: 446 FVLGPEADQKGSL----VYRYHL-HENIMECEE 473
VLG QKGSL V R+ H M+ EE
Sbjct: 576 QVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEE 608
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ +
Sbjct: 380 EELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++++ EF G HL + V + + +AI G V
Sbjct: 439 ASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPF 498
Query: 111 FQSHSGSINDE 121
+ G + D+
Sbjct: 499 YAESGGQVGDK 509
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 276 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQF 325
G V L + + VD++++G EA ++LD++ FYAE GGQ+ D+G + F
Sbjct: 468 GKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANF 517
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 273
VD++++G EA ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAN 516
>sp|A9MFZ1|SYA_SALAR Alanine--tRNA ligase OS=Salmonella arizonae (strain ATCC BAA-731 /
CDC346-86 / RSK2980) GN=alaS PE=3 SV=2
Length = 876
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 26/139 (18%)
Query: 322 NKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSK 381
N + V+++++G EA ++LD++ FYAE GGQ+ D+G + GV
Sbjct: 476 NGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGVG------------------- 516
Query: 382 YALPIFLQFSLSNLKKKKKLVKLLHTLSH-TLRVGDKLKLHIDTARRRPIMSNHTATHIL 440
F++++ +K + + L LS L+VGD ++ +D ARR I NH+ATH++
Sbjct: 517 ------FTFAVNDTQKYGQAIGHLGKLSAGALKVGDVVQADVDEARRARIRLNHSATHLM 570
Query: 441 NHALRFVLGPEADQKGSLV 459
+ ALR VLG QKGSLV
Sbjct: 571 HAALRQVLGAHVAQKGSLV 589
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL + L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ +
Sbjct: 380 EELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERDIKVDEAGFETAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++++ EF G HL + V ++ + EAI G V
Sbjct: 439 ASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVNGKAVEAINAGQEAVVVLDQTPF 498
Query: 111 FQSHSGSINDE 121
+ G + D+
Sbjct: 499 YAESGGQVGDK 509
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 31/40 (77%)
Query: 233 NKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGV 272
N + V+++++G EA ++LD++ FYAE GGQ+ D+G + GV
Sbjct: 476 NGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGV 515
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 69 SVEFCGGTHLAMAHHVGDFCISSEEAIAKGSNIVSYC---GSKGTFQSHSGSIND 120
S E CGGTH +G F I SE A G + G+ T + S +ND
Sbjct: 662 STELCGGTHARRTGDIGLFRIISESGTAAGVRRIEAVTGEGAMATVHAQSDRLND 716
>sp|A3N018|SYA_ACTP2 Alanine--tRNA ligase OS=Actinobacillus pleuropneumoniae serotype 5b
(strain L20) GN=alaS PE=3 SV=1
Length = 874
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 81/153 (52%), Gaps = 31/153 (20%)
Query: 318 GFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNL 377
G SN + VD++ SG A I+LD+++FYAE GGQ+ D G L++
Sbjct: 471 GLFSNGKAVDTIQSGESAVIILDQTSFYAEMGGQVGDSG-----------------LIST 513
Query: 378 EGSKYALPIFLQFSLSNLKKKKKLVKLLHTL-SHTLRVGDKLKLHIDTARRRPIMSNHTA 436
E F++++ +K ++ + L S +L +GDK+ + RR I +NH+A
Sbjct: 514 E--------ICNFAVNDTQKYGQVFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSA 565
Query: 437 THILNHALRFVLGPEADQKGSLVYRYHLHENIM 469
TH+L+ ALR VLG QKGSLV ENI+
Sbjct: 566 THLLHSALREVLGDHVAQKGSLV-----SENIL 593
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 275 EGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNK 323
+ T+VGL N + VD++ SG A I+LD+++FYAE GGQ+ D G +S +
Sbjct: 466 QATIVGLFSNGKAVDTIQSGESAVIILDQTSFYAEMGGQVGDSGLISTE 514
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 10 ESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSE 59
E+ L G+VA++LYDTYGFP+DLT + E+ L++D +E A+ AQ E
Sbjct: 385 ENNTLSGEVAFKLYDTYGFPLDLTADVCRERELTIDEAGFE-AEMTAQRE 433
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 233 NKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 269
N + VD++ SG A I+LD+++FYAE GGQ+ D G +
Sbjct: 475 NGKAVDTIQSGESAVIILDQTSFYAEMGGQVGDSGLI 511
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 67 ETSVEFCGGTHLAMAHHVGDFCISSEEAIAKG 98
E S+E CGGTH+ +G F + SE A+A G
Sbjct: 659 EFSIELCGGTHVQRTGDIGLFKLVSEGAVAAG 690
>sp|B2THN0|SYA_CLOBB Alanine--tRNA ligase OS=Clostridium botulinum (strain Eklund 17B /
Type B) GN=alaS PE=3 SV=1
Length = 879
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 71/141 (50%), Gaps = 23/141 (16%)
Query: 319 FMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLE 378
++ + F DS++ G A ++ D + FYAE GGQI D G + N + +I + N+
Sbjct: 474 LVNGEDFADSITEGDNAVVVTDVTPFYAEMGGQIGDTGTIYNDNFKGKI---LDTKKNIG 530
Query: 379 GSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATH 438
G K++ + +S L+VGDK+ L +D ARR I NHTATH
Sbjct: 531 G--------------------KIIHFVEAISGELKVGDKVTLEVDNARRENIKKNHTATH 570
Query: 439 ILNHALRFVLGPEADQKGSLV 459
+L+ AL VLG Q GS V
Sbjct: 571 LLDSALVKVLGSHVHQAGSYV 591
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 50/73 (68%), Gaps = 6/73 (8%)
Query: 5 IAKLGES--KVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVD----MEVYEDAKKKAQS 58
I++L E+ KVL G ++LYDT+GFP++LT+ ++E++GLS+D E ++ +++A+S
Sbjct: 374 ISELKENNEKVLKGADGFKLYDTFGFPMELTKEILEDEGLSLDEDGFHEEMKEQRERARS 433
Query: 59 EPESQAGMETSVE 71
++ M T V+
Sbjct: 434 ARKTSNYMGTDVK 446
Score = 40.8 bits (94), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 234 KQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYN-----KQFV 288
+ F DS++ G A ++ D + FYAE GGQI D G + N +G ++ + N FV
Sbjct: 478 EDFADSITEGDNAVVVTDVTPFYAEMGGQIGDTGTIYNDNFKGKILDTKKNIGGKIIHFV 537
Query: 289 DSVSSGTEAG 298
+++S + G
Sbjct: 538 EAISGELKVG 547
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 29 PVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQAGMETSVEFCGGTHLAMAHHVGDFC 88
PV+ T++ ++E S + +++D K A+ AG E S E CGGTH+ +G F
Sbjct: 627 PVNTTEMDLQEAKNSGAVGIFDD--KYAEKVRVVCAG-EYSKELCGGTHIDNTGKIGLFK 683
Query: 89 ISSEEAIAKGS 99
I SE IA G+
Sbjct: 684 IISENGIAAGT 694
>sp|B0BNS8|SYA_ACTPJ Alanine--tRNA ligase OS=Actinobacillus pleuropneumoniae serotype 3
(strain JL03) GN=alaS PE=3 SV=1
Length = 874
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 31/153 (20%)
Query: 318 GFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNL 377
G SN + VD++ SG A I+LD++ FYAE GGQ+ D G L++
Sbjct: 471 GLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGDSG-----------------LIST 513
Query: 378 EGSKYALPIFLQFSLSNLKKKKKLVKLLHTL-SHTLRVGDKLKLHIDTARRRPIMSNHTA 436
E F++++ +K ++ + L S +L +GDK+ + RR I +NH+A
Sbjct: 514 E--------ICNFTVNDTQKYGQVFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSA 565
Query: 437 THILNHALRFVLGPEADQKGSLVYRYHLHENIM 469
TH+L+ ALR VLG QKGSLV ENI+
Sbjct: 566 THLLHSALREVLGDHVAQKGSLV-----SENIL 593
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 275 EGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNK 323
+ T+VGL N + VD++ SG A I+LD++ FYAE GGQ+ D G +S +
Sbjct: 466 QATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGDSGLISTE 514
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 10 ESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSE 59
E+ L G+VA++LYDTYGFP+DLT + E+ L++D +E A+ AQ E
Sbjct: 385 ENNTLSGEVAFKLYDTYGFPLDLTADVCRERELTIDEAGFE-AEMTAQRE 433
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 233 NKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 269
N + VD++ SG A I+LD++ FYAE GGQ+ D G +
Sbjct: 475 NGKAVDTIQSGESAVIILDQTPFYAEMGGQVGDSGLI 511
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 67 ETSVEFCGGTHLAMAHHVGDFCISSEEAIAKG 98
E S+E CGGTH+ +G F + SE A+A G
Sbjct: 659 EFSIELCGGTHVQRTGDIGLFKLVSEGAVAAG 690
>sp|Q32CN1|SYA_SHIDS Alanine--tRNA ligase OS=Shigella dysenteriae serotype 1 (strain
Sd197) GN=alaS PE=3 SV=1
Length = 876
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 82/153 (53%), Gaps = 29/153 (18%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
VD++++G +A ++LD++ FYAE GGQ+ D+G + G N FS +V + KY
Sbjct: 480 VDAINAGQDAVVVLDQTPFYAESGGQVGDKGELKGAN--------FSFVVE-DTQKYGQA 530
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATHILNHALR 445
I L+ + +L+VGD ++ +D ARR I NH+ATH+++ ALR
Sbjct: 531 IGHIGKLA---------------AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALR 575
Query: 446 FVLGPEADQKGSL----VYRYHL-HENIMECEE 473
VLG QKGSL V R+ H M+ EE
Sbjct: 576 QVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEE 608
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ +
Sbjct: 380 EELAKL-SGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++++ EF G HL + V + + +AI G + V
Sbjct: 439 ASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQDAVVVLDQTPF 498
Query: 111 FQSHSGSINDE 121
+ G + D+
Sbjct: 499 YAESGGQVGDK 509
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 276 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQF 325
G V L + + VD++++G +A ++LD++ FYAE GGQ+ D+G + F
Sbjct: 468 GKVTALFVDGKAVDAINAGQDAVVVLDQTPFYAESGGQVGDKGELKGANF 517
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 29/37 (78%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 273
VD++++G +A ++LD++ FYAE GGQ+ D+G + G N
Sbjct: 480 VDAINAGQDAVVVLDQTPFYAESGGQVGDKGELKGAN 516
>sp|P36428|SYA_ARATH Alanine--tRNA ligase OS=Arabidopsis thaliana GN=ALATS PE=1 SV=3
Length = 1003
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 42/234 (17%)
Query: 247 GILLDKSNFYAEQGGQIYD-EGFMIGVNDEGTVVGLRYNKQF-------VDSVSSGTEAG 298
G LD + AE+ G + D +GF + + NKQ D+ S+ +AG
Sbjct: 471 GFPLDLTQLMAEERGLLVDVDGFNKAMEEARERSRSAQNKQAGGAIVMDADATSTLHKAG 530
Query: 299 ILLDKSNF----YAEQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYD 354
+ +F + + ++ + + F++S ++ G++L ++FYAEQGGQI+D
Sbjct: 531 VSATDDSFKYIWFQDHESEL--KAIYTGSTFLESSAASDNVGLVLGSTSFYAEQGGQIFD 588
Query: 355 EGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHT--- 411
G +EGS F F++ N++ V + LS
Sbjct: 589 TGL-------------------IEGS------FGTFNVCNVQIFGGFVLHIGYLSKETGE 623
Query: 412 LRVGDKLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLH 465
+ VGDK+ +D RR+ I NHT TH+LN+AL+ VLG DQKGS+V L
Sbjct: 624 VSVGDKVICKVDYERRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLR 677
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 43/60 (71%), Gaps = 4/60 (6%)
Query: 10 ESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVY----EDAKKKAQSEPESQAG 65
+ L GD A+ L+DTYGFP+DLTQLM EE+GL VD++ + E+A+++++S QAG
Sbjct: 454 QGNTLSGDDAFILWDTYGFPLDLTQLMAEERGLLVDVDGFNKAMEEARERSRSAQNKQAG 513
Score = 40.8 bits (94), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 58 SEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGSNIVSYCGSKGTFQS 113
++PE+ S EFCGGTH+ F + SEE IAKG V+ ++ F +
Sbjct: 750 ADPENNEWSLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDA 805
Score = 39.3 bits (90), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 236 FVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIG 271
F++S ++ G++L ++FYAEQGGQI+D G + G
Sbjct: 559 FLESSAASDNVGLVLGSTSFYAEQGGQIFDTGLIEG 594
>sp|Q31X62|SYA_SHIBS Alanine--tRNA ligase OS=Shigella boydii serotype 4 (strain Sb227)
GN=alaS PE=3 SV=1
Length = 876
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 31/154 (20%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
VD++++G EA ++LD++ FYAE GGQ+ D+G + N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKDAN----------------------- 516
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSH-TLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
F++ + +K + + + L+ +L+VGD ++ +D ARR I NH+ATH+++ AL
Sbjct: 517 --FSFAVEDTQKYGQAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHLMHAAL 574
Query: 445 RFVLGPEADQKGSL----VYRYHL-HENIMECEE 473
R VLG QKGSL V R+ H M+ EE
Sbjct: 575 RQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEE 608
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ +
Sbjct: 380 EELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++++ EF G HL + V + + +AI G V
Sbjct: 439 ASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPF 498
Query: 111 FQSHSGSINDE 121
+ G + D+
Sbjct: 499 YAESGGQVGDK 509
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 276 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQF 325
G V L + + VD++++G EA ++LD++ FYAE GGQ+ D+G + + F
Sbjct: 468 GKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKDANF 517
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 28/37 (75%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 273
VD++++G EA ++LD++ FYAE GGQ+ D+G + N
Sbjct: 480 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKDAN 516
>sp|A9N0C1|SYA_SALPB Alanine--tRNA ligase OS=Salmonella paratyphi B (strain ATCC
BAA-1250 / SPB7) GN=alaS PE=3 SV=1
Length = 876
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 76/135 (56%), Gaps = 26/135 (19%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
V+++++G EA ++LD++ FYAE GGQ+ D+G L+G+ +
Sbjct: 480 VEAINAGQEAVVVLDQTPFYAESGGQVGDKG-------------------ELKGAGFT-- 518
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSH-TLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
FS+ + +K + + L LS L+VGD ++ +D ARR I NH+ATH+++ AL
Sbjct: 519 ----FSVDDTQKYGQAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHLMHAAL 574
Query: 445 RFVLGPEADQKGSLV 459
R VLG QKGSLV
Sbjct: 575 RQVLGTHVAQKGSLV 589
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL + L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ +
Sbjct: 380 EELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++++ EF G HL + V + + EAI G V
Sbjct: 439 ASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAVEAINAGQEAVVVLDQTPF 498
Query: 111 FQSHSGSINDE 121
+ G + D+
Sbjct: 499 YAESGGQVGDK 509
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 276 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEA 335
G V L + + V+++++G EA ++LD++ FYAE GGQ+ D+G + F SV +
Sbjct: 468 GKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAGFTFSVDDTQKY 527
Query: 336 G 336
G
Sbjct: 528 G 528
Score = 39.3 bits (90), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGV 272
V+++++G EA ++LD++ FYAE GGQ+ D+G + G
Sbjct: 480 VEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGA 515
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 69 SVEFCGGTHLAMAHHVGDFCISSEEAIAKGSNIVSYC---GSKGTFQSHSGSIND 120
S E CGGTH + +G F I SE A G + G+ T + S +ND
Sbjct: 662 STELCGGTHASRTGDIGLFRIISESGTAAGIRRIEAVTGEGAMATVHAQSDRLND 716
>sp|A9WCR2|SYA_CHLAA Alanine--tRNA ligase OS=Chloroflexus aurantiacus (strain ATCC 29366
/ DSM 635 / J-10-fl) GN=alaS PE=3 SV=1
Length = 894
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 318 GFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNL 377
G + + + S +G I+LD + FYAE GGQI D G ++G QIE
Sbjct: 476 GMLGDGDALTSADTGRSVQIVLDTTPFYAESGGQIGDTGLLVGPEGSVQIE--------- 526
Query: 378 EGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTAT 437
++ LP + V ++ + VGD+++ +D RR I NHTAT
Sbjct: 527 -DTRRPLPGLI-------------VHYGRVVNGRISVGDQVQATVDVVRRADIQRNHTAT 572
Query: 438 HILNHALRFVLGPEADQKGSLV 459
H+L ALR VLG A Q GSLV
Sbjct: 573 HMLQRALRDVLGEHAAQAGSLV 594
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 1 MLQTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDA 52
+++ + GE +V+PG+ A+ L DTYGFP+DLTQ + E+GL+VD YE A
Sbjct: 379 VIEQVRARGE-QVIPGNDAFVLKDTYGFPLDLTQKIAAEQGLTVDEAGYEAA 429
>sp|A6SVH6|SYA_JANMA Alanine--tRNA ligase OS=Janthinobacterium sp. (strain Marseille)
GN=alaS PE=3 SV=1
Length = 869
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 70/136 (51%), Gaps = 27/136 (19%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
V S+ G ++LD + FY+E GGQ+ D+GF ++ EG
Sbjct: 474 VPSLKEGQAGIVVLDTTPFYSESGGQVGDQGF-----------------ISAEG------ 510
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSH--TLRVGDKLKLHIDTARRRPIMSNHTATHILNHA 443
+QF + + +K K V H + TL VGDK+K +D ARR M NH+ THI++ A
Sbjct: 511 --VQFGVEDTQKIKADVYGHHGVQTQGTLTVGDKVKAAVDGARRAATMRNHSVTHIMHKA 568
Query: 444 LRFVLGPEADQKGSLV 459
LR VLG QKGSLV
Sbjct: 569 LREVLGDHVQQKGSLV 584
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 9 GESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDA--KKKAQSEPESQAGM 66
G++KVLPG+VA++L+DT+GFP+DL+ + E+GLSVD + A K+KA + M
Sbjct: 380 GDAKVLPGEVAFKLHDTFGFPLDLSADVCRERGLSVDEAGFAAAMEKQKAAGRAAGKFKM 439
Query: 67 ETSVEFCG 74
E +VE+ G
Sbjct: 440 ERAVEYTG 447
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 269
V S+ G ++LD + FY+E GGQ+ D+GF+
Sbjct: 474 VPSLKEGQAGIVVLDTTPFYSESGGQVGDQGFI 506
>sp|Q0VNK2|SYA_ALCBS Alanine--tRNA ligase OS=Alcanivorax borkumensis (strain SK2 / ATCC
700651 / DSM 11573) GN=alaS PE=3 SV=2
Length = 863
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 32/156 (20%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
VD++++G E ++LD++ FYAE GGQ+ D G +I DE++
Sbjct: 468 VDTLNAGEEGMVVLDRTPFYAESGGQVGDTGALIA--DEAR------------------- 506
Query: 386 IFLQFSLSNLKKKKKL-VKLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
F +++ +K++ V + +S +L +G K+ +D RR +M NH+ATH+++ AL
Sbjct: 507 ----FMVTDTRKRQAAHVHVGKQVSGSLTIGGKVSACVDVDRRLAVMRNHSATHLMHAAL 562
Query: 445 RFVLGPEADQKGSLVYRYHLH------ENIMECEEE 474
R VLG QKGSLV +L E + E + E
Sbjct: 563 RNVLGEHVQQKGSLVSADYLRFDFSHGEAVSEAQRE 598
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 10 ESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQAG 65
+ +VLPGDV + LYDT+GFP DLT + E+ LSVDM+ +E A AQ E AG
Sbjct: 374 DGRVLPGDVLFNLYDTHGFPPDLTADVARERDLSVDMDGFE-AAMAAQRERARGAG 428
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 274 DEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 320
D+ TVV L + VD++++G E ++LD++ FYAE GGQ+ D G +
Sbjct: 454 DDNTVVALYKDGAAVDTLNAGEEGMVVLDRTPFYAESGGQVGDTGAL 500
Score = 39.7 bits (91), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMI 270
VD++++G E ++LD++ FYAE GGQ+ D G +I
Sbjct: 468 VDTLNAGEEGMVVLDRTPFYAESGGQVGDTGALI 501
>sp|A8GA09|SYA_SERP5 Alanine--tRNA ligase OS=Serratia proteamaculans (strain 568)
GN=alaS PE=3 SV=2
Length = 875
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 26/143 (18%)
Query: 324 QFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYA 383
Q V+ + +G EA ++LD++ FY E GGQ+ D+G + N +
Sbjct: 478 QPVNEIHAGEEAVVVLDETPFYGESGGQVGDKGVLKAANAD------------------- 518
Query: 384 LPIFLQFSLSNLKKKKKLVKLLHTLSH-TLRVGDKLKLHIDTARRRPIMSNHTATHILNH 442
F +S+ +K + + LSH +L+V D++ IDT RR I NH+ATH+L+
Sbjct: 519 ------FEVSDTQKYGQAIGHQGKLSHGSLKVNDRVDAKIDTVRRNRIRLNHSATHLLHA 572
Query: 443 ALRFVLGPEADQKGSLVYRYHLH 465
ALR LG QKGSLV +L
Sbjct: 573 ALRQTLGEHVAQKGSLVNDKYLR 595
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 10 ESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQAG 65
+ L G+ A+RLYDTYGFPVDLT + E+GL VD +E A + + +G
Sbjct: 386 QGDTLDGETAFRLYDTYGFPVDLTADVCRERGLKVDEAGFEQAMEAQRRRARESSG 441
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 275 EGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 320
+ TV L + Q V+ + +G EA ++LD++ FY E GGQ+ D+G +
Sbjct: 467 QSTVTALFRDGQPVNEIHAGEEAVVVLDETPFYGESGGQVGDKGVL 512
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 235 QFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 273
Q V+ + +G EA ++LD++ FY E GGQ+ D+G + N
Sbjct: 478 QPVNEIHAGEEAVVVLDETPFYGESGGQVGDKGVLKAAN 516
>sp|C5Z7K4|SYAP_SORBI Probable alanine--tRNA ligase, chloroplastic OS=Sorghum bicolor
GN=Sb10g008780 PE=3 SV=1
Length = 961
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 26/163 (15%)
Query: 318 GFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMI--GVNDESQIELWFSSLV 375
G + N V+ VS G+E ILLD++ FYAE GGQ+ D GF+ G D SQ ++++
Sbjct: 541 GLLVNGNPVNEVSEGSEVEILLDRTPFYAESGGQVGDNGFLYVNGGEDRSQ-----AAVI 595
Query: 376 NLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHT 435
+ +Q SL N+ K +K ++ VG ++ +D R+ ++HT
Sbjct: 596 EIND--------VQKSLGNIFVHKGTIK-----QGSVEVGKEVDACVDAKLRQGAKAHHT 642
Query: 436 ATHILNHALRFVLGPEADQKGSLV------YRYHLHENIMECE 472
ATH+L AL+ V+G E Q GSLV + ++ H + E E
Sbjct: 643 ATHLLQSALKSVVGSETSQAGSLVAFDRLRFDFNFHRPVSEGE 685
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 233 NKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 269
N V+ VS G+E ILLD++ FYAE GGQ+ D GF+
Sbjct: 545 NGNPVNEVSEGSEVEILLDRTPFYAESGGQVGDNGFL 581
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
Query: 9 GESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVY----EDAKKKAQS 58
G+ L G + LYDTYGFPV++T + E+G++VD+E + E+ +K++Q+
Sbjct: 450 GDKPSLSGKDLFLLYDTYGFPVEITAEIASERGVTVDIEGFDIEMENQRKQSQA 503
Score = 32.7 bits (73), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 69 SVEFCGGTHLAMAHHVGDFCISSEEAIAKG 98
S+E CGGTH++ + F I SE+ IA G
Sbjct: 739 SLELCGGTHVSNTAEIRGFKIISEQGIASG 768
>sp|B2V3W2|SYA_CLOBA Alanine--tRNA ligase OS=Clostridium botulinum (strain Alaska E43 /
Type E3) GN=alaS PE=3 SV=1
Length = 879
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 23/141 (16%)
Query: 319 FMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLE 378
++ + F +S+ G A ++ D + FYAE GGQI D G + N + ++ + N+
Sbjct: 474 LVNGEDFTNSIIEGNNAVVVTDVTPFYAEMGGQIGDTGTIYNDNFKGKV---LDTKKNIG 530
Query: 379 GSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATH 438
G K++ + +S L+VGDK+KL +D ARR I NHTATH
Sbjct: 531 G--------------------KIIHFVEAISGELKVGDKVKLEVDNARRENIKRNHTATH 570
Query: 439 ILNHALRFVLGPEADQKGSLV 459
+L+ AL VLG Q GS V
Sbjct: 571 LLDAALVKVLGSHVHQAGSYV 591
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 50/73 (68%), Gaps = 6/73 (8%)
Query: 5 IAKLGES--KVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVY----EDAKKKAQS 58
I++L E+ KVL G ++LYDT+GFP++LT+ ++E++ LS+D + + ++ +++A+S
Sbjct: 374 ISELKENNEKVLKGADGFKLYDTFGFPMELTKEILEDEDLSLDEDGFHKEMKEQRERARS 433
Query: 59 EPESQAGMETSVE 71
++ M T V+
Sbjct: 434 ARKTSNYMGTDVK 446
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 234 KQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYN-----KQFV 288
+ F +S+ G A ++ D + FYAE GGQI D G + N +G V+ + N FV
Sbjct: 478 EDFTNSIIEGNNAVVVTDVTPFYAEMGGQIGDTGTIYNDNFKGKVLDTKKNIGGKIIHFV 537
Query: 289 DSVSSGTEAG 298
+++S + G
Sbjct: 538 EAISGELKVG 547
Score = 36.6 bits (83), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 29 PVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQAGMETSVEFCGGTHLAMAHHVGDFC 88
PV+ T++ ++E S + +++D K A+ AG E S E CGGTH+ +G F
Sbjct: 627 PVNTTEMDLQEAKNSGAVGIFDD--KYAEKVRVVCAG-EYSKELCGGTHIDNTGKIGLFK 683
Query: 89 ISSEEAIAKGS 99
I SE IA G+
Sbjct: 684 IISENGIAAGT 694
>sp|Q8Z4D5|SYA_SALTI Alanine--tRNA ligase OS=Salmonella typhi GN=alaS PE=3 SV=1
Length = 876
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 76/135 (56%), Gaps = 26/135 (19%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
V+++++G EA ++LD++ FYAE GGQ+ D+G L+G+ +
Sbjct: 480 VEAINAGQEAVVVLDQTPFYAESGGQVGDKG-------------------ELKGAGFT-- 518
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSH-TLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
F++ + +K + + L LS L+VGD ++ +D ARR I NH+ATH+++ AL
Sbjct: 519 ----FAVDDTQKYGQAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHLMHAAL 574
Query: 445 RFVLGPEADQKGSLV 459
R VLG QKGSLV
Sbjct: 575 RQVLGTHVAQKGSLV 589
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL + L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ +
Sbjct: 380 EELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++++ EF G HL + V + + EAI G V
Sbjct: 439 ASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAVEAINAGQEAVVVLDQTPF 498
Query: 111 FQSHSGSINDE 121
+ G + D+
Sbjct: 499 YAESGGQVGDK 509
Score = 39.3 bits (90), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGV 272
V+++++G EA ++LD++ FYAE GGQ+ D+G + G
Sbjct: 480 VEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGA 515
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 69 SVEFCGGTHLAMAHHVGDFCISSEEAIAKGSNIVSYC---GSKGTFQSHSGSIND 120
S E CGGTH + +G F I SE A G + G+ T + S +ND
Sbjct: 662 STELCGGTHASRTGDIGLFRIISESGTAAGIRRIEAVTGEGAMATVHAQSDRLND 716
>sp|Q8ZMK6|SYA_SALTY Alanine--tRNA ligase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=alaS PE=3 SV=1
Length = 876
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 76/135 (56%), Gaps = 26/135 (19%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
V+++++G EA ++LD++ FYAE GGQ+ D+G L+G+ +
Sbjct: 480 VEAINAGQEAVVVLDQTPFYAESGGQVGDKG-------------------ELKGAGFT-- 518
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSH-TLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
F++ + +K + + L LS L+VGD ++ +D ARR I NH+ATH+++ AL
Sbjct: 519 ----FAVDDTQKYGQAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHLMHAAL 574
Query: 445 RFVLGPEADQKGSLV 459
R VLG QKGSLV
Sbjct: 575 RQVLGTHVAQKGSLV 589
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL + L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ +
Sbjct: 380 EELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++++ EF G HL + V + + EAI G V
Sbjct: 439 ASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAVEAINAGQEAVVVLDQTPF 498
Query: 111 FQSHSGSINDE 121
+ G + D+
Sbjct: 499 YAESGGQVGDK 509
Score = 39.3 bits (90), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGV 272
V+++++G EA ++LD++ FYAE GGQ+ D+G + G
Sbjct: 480 VEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGA 515
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 69 SVEFCGGTHLAMAHHVGDFCISSEEAIAKGSNIVSYC---GSKGTFQSHSGSIND 120
S E CGGTH + +G F I SE A G + G+ T + S +ND
Sbjct: 662 STELCGGTHASRTGDIGLFRIISESGTAAGIRRIEAVTGEGAMATVHAQSDRLND 716
>sp|Q8Y722|SYA_LISMO Alanine--tRNA ligase OS=Listeria monocytogenes serovar 1/2a (strain
ATCC BAA-679 / EGD-e) GN=alaS PE=3 SV=1
Length = 879
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 23/141 (16%)
Query: 319 FMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLE 378
+ N VD V++G EA ++ ++ FYAE GGQ+ D+G + ES+ L + V
Sbjct: 474 LIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQVADKGTI-----ESETGLAYVEDVQKA 528
Query: 379 GSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATH 438
+K NL + + L+ GD +KL +D +RR + NHTATH
Sbjct: 529 PNK-----------QNLHR-------ISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATH 570
Query: 439 ILNHALRFVLGPEADQKGSLV 459
+L+ AL+ LG +Q GSLV
Sbjct: 571 LLHRALKDTLGEHVNQAGSLV 591
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 1 MLQTI---AKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKK 55
+L+TI AK +V+ G ++LYDT+GFPV+LT+ E+ GL VD +E K+
Sbjct: 371 ILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDHGLKVDHAGFEAEMKE 428
Score = 40.0 bits (92), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 281 LRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNK 323
L N VD V++G EA ++ ++ FYAE GGQ+ D+G + ++
Sbjct: 474 LIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQVADKGTIESE 516
Score = 40.0 bits (92), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 200 LVSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGILLDKSNFYAEQ 259
L F+G ++ T+H + L N VD V++G EA ++ ++ FYAE
Sbjct: 453 LTEKSAFVGYNS-------TEHVSEI--LYLIQNDTLVDEVAAGNEAQVIFKETPFYAES 503
Query: 260 GGQIYDEG 267
GGQ+ D+G
Sbjct: 504 GGQVADKG 511
>sp|B0CFX4|SYA_ACAM1 Alanine--tRNA ligase OS=Acaryochloris marina (strain MBIC 11017)
GN=alaS PE=3 SV=1
Length = 873
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 95/206 (46%), Gaps = 28/206 (13%)
Query: 257 AEQGGQIYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEA-GILLDKSNF--YAEQGGQ 313
AEQG + ++GF + ++ G +K +V S E + ++F Y + +
Sbjct: 404 AEQGLTVDEDGFAKAMKEQQDR-GRSAHKTIDLTVQSALEQLAATVHPTDFLGYTDFSAK 462
Query: 314 IYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSS 373
+ + VD S+G+E I LD++ FYAE GGQI D G++ G +
Sbjct: 463 AKVAALLVKGETVDQASAGSEVQIALDQTPFYAESGGQIGDRGYLNGKD----------V 512
Query: 374 LVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKLHIDTARRRPIMSN 433
+V +E + IF+ + TL VGDKL ID A RR + ++
Sbjct: 513 VVRIEDVQKESDIFIHYG--------------RIERGTLEVGDKLTAQIDLACRRQVQAH 558
Query: 434 HTATHILNHALRFVLGPEADQKGSLV 459
HTATH+L AL+ ++ Q GSLV
Sbjct: 559 HTATHLLQAALKNIVDESIGQAGSLV 584
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 10 ESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQ 57
+ K + G A+ LYDTYGFP++LTQ + E+GL+VD + + A K+ Q
Sbjct: 376 KPKQISGKDAFDLYDTYGFPLELTQEIAAEQGLTVDEDGFAKAMKEQQ 423
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIG 271
VD S+G+E I LD++ FYAE GGQI D G++ G
Sbjct: 475 VDQASAGSEVQIALDQTPFYAESGGQIGDRGYLNG 509
>sp|Q5PF17|SYA_SALPA Alanine--tRNA ligase OS=Salmonella paratyphi A (strain ATCC 9150 /
SARB42) GN=alaS PE=3 SV=1
Length = 876
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 26/135 (19%)
Query: 326 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALP 385
V+++++G EA ++LD++ FYAE GGQ+ D+G L+G+ +
Sbjct: 480 VEAINAGQEAVVVLDQTPFYAESGGQVGDKG-------------------ELKGAGFT-- 518
Query: 386 IFLQFSLSNLKKKKKLVKLLHTLSH-TLRVGDKLKLHIDTARRRPIMSNHTATHILNHAL 444
F++ + +K + + + LS L+VGD ++ +D ARR I NH+ATH+++ AL
Sbjct: 519 ----FAVDDTQKYGQAIGHIGKLSAGALKVGDAVQADVDEARRARIRLNHSATHLMHAAL 574
Query: 445 RFVLGPEADQKGSLV 459
R VLG QKGSLV
Sbjct: 575 RQVLGTHVAQKGSLV 589
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 3 QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
+ +AKL + L G+ A+RLYDTYGFPVDLT + E+ + VD +E A ++ +
Sbjct: 380 EELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEVGFEAAMEEQRRRARE 438
Query: 63 QAG----------METSVEFCGGTHLAMAHHVGDFCISSE--EAIAKGSNIVSYCGSKGT 110
+G ++++ EF G HL + V + + EAI G V
Sbjct: 439 ASGFGADYNAMIRVDSASEFKGYDHLELNGKVTALFVDGKAVEAINAGQEAVVVLDQTPF 498
Query: 111 FQSHSGSINDE 121
+ G + D+
Sbjct: 499 YAESGGQVGDK 509
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 276 GTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEA 335
G V L + + V+++++G EA ++LD++ FYAE GGQ+ D+G + F +V +
Sbjct: 468 GKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAGFTFAVDDTQKY 527
Query: 336 G 336
G
Sbjct: 528 G 528
Score = 39.3 bits (90), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 237 VDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGV 272
V+++++G EA ++LD++ FYAE GGQ+ D+G + G
Sbjct: 480 VEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGA 515
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 69 SVEFCGGTHLAMAHHVGDFCISSEEAIAKGSNIVSYC---GSKGTFQSHSGSIND 120
S E CGGTH + +G F I SE A G + G+ T + S +ND
Sbjct: 662 STELCGGTHASRTGDIGLFRIISESGTAAGIRRIEAVTGEGAMATVHAQSDRLND 716
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,525,359
Number of Sequences: 539616
Number of extensions: 8106758
Number of successful extensions: 22593
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 18270
Number of HSP's gapped (non-prelim): 3825
length of query: 474
length of database: 191,569,459
effective HSP length: 121
effective length of query: 353
effective length of database: 126,275,923
effective search space: 44575400819
effective search space used: 44575400819
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)