Query psy16318
Match_columns 474
No_of_seqs 400 out of 2643
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 18:17:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0013 AlaS Alanyl-tRNA synth 100.0 5.9E-47 1.3E-51 419.0 10.5 272 105-470 319-603 (879)
2 PLN02900 alanyl-tRNA synthetas 100.0 3.1E-40 6.7E-45 373.1 11.6 272 109-470 347-634 (936)
3 TIGR00344 alaS alanine--tRNA l 100.0 4.9E-40 1.1E-44 369.8 10.7 267 106-470 318-596 (851)
4 COG0013 AlaS Alanyl-tRNA synth 100.0 9.1E-40 2E-44 362.0 11.0 210 11-359 383-619 (879)
5 KOG0188|consensus 100.0 5.1E-40 1.1E-44 351.9 4.6 260 108-470 328-606 (895)
6 PRK00252 alaS alanyl-tRNA synt 100.0 2.9E-39 6.4E-44 364.6 9.1 264 109-470 315-589 (865)
7 TIGR03683 A-tRNA_syn_arch alan 100.0 9.2E-38 2E-42 352.6 9.4 251 111-470 377-633 (902)
8 PRK13902 alaS alanyl-tRNA synt 100.0 3.1E-37 6.8E-42 348.3 10.5 251 111-470 373-629 (900)
9 PLN02900 alanyl-tRNA synthetas 100.0 5.5E-32 1.2E-36 306.3 10.9 216 11-358 408-649 (936)
10 TIGR00344 alaS alanine--tRNA l 100.0 4.8E-31 1E-35 297.3 10.1 207 11-358 380-611 (851)
11 PRK00252 alaS alanyl-tRNA synt 100.0 4.4E-30 9.6E-35 290.3 10.8 204 12-358 375-604 (865)
12 KOG0188|consensus 100.0 7.3E-30 1.6E-34 274.2 4.2 213 7-359 385-622 (895)
13 PF01411 tRNA-synt_2c: tRNA sy 99.9 1.1E-28 2.3E-33 267.6 -0.9 167 10-305 378-552 (552)
14 TIGR03683 A-tRNA_syn_arch alan 99.9 1.1E-27 2.5E-32 271.0 6.6 192 11-358 431-648 (902)
15 PRK13902 alaS alanyl-tRNA synt 99.9 2.2E-27 4.8E-32 268.6 8.6 191 12-358 428-644 (900)
16 PF01411 tRNA-synt_2c: tRNA sy 99.9 1.7E-27 3.7E-32 258.2 -3.4 227 106-426 316-552 (552)
17 COG2872 Predicted metal-depend 99.9 4.5E-23 9.8E-28 202.0 12.1 122 323-471 13-134 (241)
18 PLN02961 alanine-tRNA ligase 99.9 3.4E-22 7.4E-27 194.4 13.0 111 334-468 2-120 (223)
19 PRK01584 alanyl-tRNA synthetas 99.9 3.3E-23 7.2E-28 224.8 5.9 132 11-161 385-534 (594)
20 PRK01584 alanyl-tRNA synthetas 99.8 1.2E-22 2.7E-27 220.4 -1.6 95 105-207 321-424 (594)
21 KOG2105|consensus 98.8 4.7E-09 1E-13 104.8 6.0 97 333-460 42-140 (415)
22 PLN02961 alanine-tRNA ligase 98.6 4E-08 8.7E-13 95.9 5.0 62 246-307 3-80 (223)
23 COG2872 Predicted metal-depend 98.2 1.4E-06 3.1E-11 86.1 4.9 99 247-345 26-135 (241)
24 PLN02837 threonine-tRNA ligase 95.6 0.022 4.8E-07 63.8 6.5 54 416-470 30-83 (614)
25 PRK00413 thrS threonyl-tRNA sy 93.1 0.2 4.4E-06 56.0 6.9 61 409-470 48-108 (638)
26 PF07973 tRNA_SAD: Threonyl an 85.0 0.35 7.6E-06 35.6 0.6 30 69-98 10-39 (44)
27 PRK12444 threonyl-tRNA synthet 79.2 2.2 4.7E-05 48.1 4.4 40 430-470 73-112 (639)
28 KOG2105|consensus 54.5 7.6 0.00016 40.1 1.9 60 245-308 43-107 (415)
29 smart00863 tRNA_SAD Threonyl a 54.2 3.9 8.4E-05 29.4 -0.2 29 70-98 11-39 (44)
30 TIGR00418 thrS threonyl-tRNA s 30.2 21 0.00046 39.4 0.8 67 76-158 5-75 (563)
31 PLN02908 threonyl-tRNA synthet 25.1 2.5E+02 0.0054 32.3 8.1 42 427-469 117-159 (686)
No 1
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-47 Score=418.99 Aligned_cols=272 Identities=28% Similarity=0.387 Sum_probs=220.4
Q ss_pred cCCceee-ecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCccccc--------cccccCCccc
Q psy16318 105 CGSKGTF-QSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGW--------TGVAIGALPF 175 (474)
Q Consensus 105 ~~~klrF-fs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~--------~~~lsge~~F 175 (474)
+|.+.-| +.+++.+.+.+...||+|. .++..|..+|..||+.|.+||++|+++++ ...|+|+++|
T Consensus 319 LG~~~~fl~~LV~~~~~~m~~~ypel~------~~~~~I~~vl~~EEe~F~~TL~~G~~l~~~~~~~~~~~~~l~ge~af 392 (879)
T COG0013 319 LGIKEPFLYKLVDTVIDEMGDAYPELK------EKEDFIKEVLKLEEERFAKTLERGLKLLEKELAKLKKSKTLDGEDAF 392 (879)
T ss_pred hCCCchHHHHHHHHHHHHHhhhcHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccChHHhe
Confidence 3444445 9999999999999999998 89999999999999999999999999997 1459999999
Q ss_pred ccccCCCCCCCchhhHHHHHhhhccccccceeeccCccCcccccCCCCceeEEEEeeCCeeeecccCCceeeEe--ccCC
Q psy16318 176 GLTVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGIL--LDKS 253 (474)
Q Consensus 176 ~L~~~dtyG~P~~l~~~~~~e~~~~v~~~~f~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~G~~~~iv--ld~T 253 (474)
+|| ||||||+||+.++|+++|+.||..+|+ ..|+ .|. ++. +-.+ .+.... .......++ +..|
T Consensus 393 kLY--DTyGfP~eLt~eia~e~g~~VD~~~f~---~~m~--~qr-~~a--r~~~---~~~~~~--~~~~~~~~~~~~~~t 457 (879)
T COG0013 393 KLY--DTYGFPVELTEEIAEERGLKVDEPGFE---YAME--AQR-ERA--RASA---GSGEGA--KESEDLELIDKLPET 457 (879)
T ss_pred eeh--hcCCCCHHHHHHHHHHcCCeeccccHH---HHHH--HHH-HHh--hhcc---cccccc--chhhhhhhhccCCCc
Confidence 999 999999999999999999999999998 3565 443 211 1000 001100 001111121 2355
Q ss_pred ccccccCCeeeecceEEeeecceeEEEeeecceeeeeeecCCeEEEEEecccceeccCCCcCccceeecceeeeeeeccC
Q psy16318 254 NFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGT 333 (474)
Q Consensus 254 pFYAE~GGQv~D~G~i~~~~~kskVlav~k~~~~~~~v~~g~~~~l~vD~t~~y~~~Ggqv~d~Gsl~~~~~~~~v~~v~ 333 (474)
.| .||= .....++|..+..++.++..++.|+++.+++|+|+|||++|||++|+|.|..
T Consensus 458 ef----------~gY~-~~~~~~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~----------- 515 (879)
T COG0013 458 EF----------LGYD-DLEMEFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFG----------- 515 (879)
T ss_pred ee----------eecc-cccceEEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCceEEEEe-----------
Confidence 55 1221 2333478888887765588899999999999999999999999999999843
Q ss_pred CceEEecccccccCCCCccceeeeeeecCCcchhhhhhhhcccccCCCCCCCceeeEEEEeEEEeC-CEEEEEEee-ccc
Q psy16318 334 EAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKK-KLVKLLHTL-SHT 411 (474)
Q Consensus 334 ~~~lrfDfT~f~p~~ggq~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~k~~-~~ivH~~~~-~~~ 411 (474)
. + + ..|.|.||+|.+ +.++|.+.. .+.
T Consensus 516 ---------------------------~-~-~----------------------~~~~V~dvqK~~~~~~vH~~~~~~G~ 544 (879)
T COG0013 516 ---------------------------D-G-G----------------------GRFEVTDVQKVGNGVIVHKGKVESGE 544 (879)
T ss_pred ---------------------------c-C-C----------------------cEEEEEEEEEcCCceEEEEEeeccCc
Confidence 1 1 1 468999999997 899999987 578
Q ss_pred cCCCCEEEEEEcHHhHHHHHHhhHHHHHHHHHHHHHcCCCceeeccccCCCeEEEEccc
Q psy16318 412 LRVGDKLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIME 470 (474)
Q Consensus 412 l~vGd~V~~~ID~~rR~~imrnHTAtHLL~~ALr~vlg~~v~q~Gs~v~~~~lr~d~~~ 470 (474)
|++|+.|.+.|||+||+++|+|||||||||+|||++||+||||+||+|.+++|||||.-
T Consensus 545 l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH 603 (879)
T COG0013 545 LKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSH 603 (879)
T ss_pred cCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999974
No 2
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=3.1e-40 Score=373.09 Aligned_cols=272 Identities=29% Similarity=0.366 Sum_probs=214.6
Q ss_pred eeeecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCccccc------c----ccccCCcccccc
Q psy16318 109 GTFQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGW------T----GVAIGALPFGLT 178 (474)
Q Consensus 109 lrFfs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~------~----~~lsge~~F~L~ 178 (474)
++|+.+++.+.+.+...||+|. .++..|..+|..||..|.+||++|+++|+ . +.++|+.+|+||
T Consensus 347 ~fl~~lv~~v~~~~~~~ypel~------~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~~i~~~~~~~~~~l~g~~af~Ly 420 (936)
T PLN02900 347 GFFPALVEVVVELSGDVFPEVK------KNEKRITEIIAEEELSFGKTLEKGIEKFKKALAAAKANGGPVLSGKDAFLLY 420 (936)
T ss_pred chHHHHHHHHHHHHhccCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCHHHHHHHH
Confidence 3459999999999999999998 88999999999999999999999999886 1 459999999999
Q ss_pred cCCCCCCCchhhHHHHHhhhccccccceeeccCccCcccccCCCCceeEEEEeeCCee-eecccCC--cee--eEeccCC
Q psy16318 179 VPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQF-VDSVSSG--TEA--GILLDKS 253 (474)
Q Consensus 179 ~~dtyG~P~~l~~~~~~e~~~~v~~~~f~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-v~~~~~G--~~~--~ivld~T 253 (474)
||||||+|||.++|+|+|+.||..+|+ ..|+ .|. .++ ... .+.... ....... ... ..+...|
T Consensus 421 --dTyGfP~dlt~~ia~e~g~~vD~~~F~---~~~~--~~~-~~s---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t 488 (936)
T PLN02900 421 --DTYGFPVDLTELMAEERGVTVDMEGFE---AAME--EAR-ERS---RAA-HLKAGGGAIELAAEATSWLQKQGVAATD 488 (936)
T ss_pred --hccCCCHHHHHHHHHHcCCeecHHHHH---HHHH--HHH-HHH---Hhh-hhccccccccccHHHHHHHHhccCCCCC
Confidence 999999999999999999999999888 4565 332 100 000 000000 0000000 000 0011234
Q ss_pred ccccccCCeeeecceEEeeecceeEEEeeecceeeeeeecCCeEEEEEecccceeccCCCcCccceeecceeeeeeeccC
Q psy16318 254 NFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGT 333 (474)
Q Consensus 254 pFYAE~GGQv~D~G~i~~~~~kskVlav~k~~~~~~~v~~g~~~~l~vD~t~~y~~~Ggqv~d~Gsl~~~~~~~~v~~v~ 333 (474)
.| .||=.....+++|+++..+++.+..++.|+...+++|+|+|||++||||+|+|.|..
T Consensus 489 ~f----------~gY~~~~~~~~~v~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~----------- 547 (936)
T PLN02900 489 DF----------LKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIGDTGVLEG----------- 547 (936)
T ss_pred cc----------cccccCCccceEEEEEEECCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEec-----------
Confidence 55 233222226789999998777788888999999999999999999999999999832
Q ss_pred CceEEecccccccCCCCccceeeeeeecCCcchhhhhhhhcccccCCCCCCCceeeEEEEeEEEeCCEEEEEEee-cccc
Q psy16318 334 EAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTL-SHTL 412 (474)
Q Consensus 334 ~~~lrfDfT~f~p~~ggq~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~k~~~~ivH~~~~-~~~l 412 (474)
++. ..+.|.+|++.++.++|.+.. .+.+
T Consensus 548 ----------------------------~~~-----------------------~~~~V~dv~k~~g~i~H~~~~~~g~l 576 (936)
T PLN02900 548 ----------------------------SGG-----------------------AVVEVSDVQKAGGFVLHIGTVTEGSV 576 (936)
T ss_pred ----------------------------CCC-----------------------CEEEEEEEEEECCEEEEEEEeccCCC
Confidence 010 147899999999999999865 4678
Q ss_pred CCCCEEEEEEcHHhHHHHHHhhHHHHHHHHHHHHHcCCCceeeccccCCCeEEEEccc
Q psy16318 413 RVGDKLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIME 470 (474)
Q Consensus 413 ~vGd~V~~~ID~~rR~~imrnHTAtHLL~~ALr~vlg~~v~q~Gs~v~~~~lr~d~~~ 470 (474)
.+|++|.+.|||+||+.+|+||||+|||++||+++||.|++|+||+++++++||||..
T Consensus 577 ~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~ 634 (936)
T PLN02900 577 SVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSH 634 (936)
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeC
Confidence 9999999999999999999999999999999999999999999999999999999974
No 3
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=4.9e-40 Score=369.82 Aligned_cols=267 Identities=31% Similarity=0.398 Sum_probs=213.0
Q ss_pred CCceee-ecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCccccc-------cccccCCccccc
Q psy16318 106 GSKGTF-QSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGW-------TGVAIGALPFGL 177 (474)
Q Consensus 106 ~~klrF-fs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~-------~~~lsge~~F~L 177 (474)
|.+.-| +++++.+.+.+...||+|. .++..|..+|+.||..|.+||++|+++|+ .+.+||+.+|+|
T Consensus 318 g~~~~fl~~lv~~~~~~m~~~ypel~------~~~~~i~~ii~~Ee~~f~~tl~~G~~~l~~~~~~~~~~~i~g~~af~L 391 (851)
T TIGR00344 318 GLKEAFLYKLVPTLIEVLGDYYPELK------EKQEFVEQILELEEERFAKTLERGLRLFEKLLKKLGKKELDGEDAFKL 391 (851)
T ss_pred CCCchHHHHHHHHHHHHHhhhChHhH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHH
Confidence 334444 9999999999999999998 78899999999999999999999999887 245999999999
Q ss_pred ccCCCCCCCchhhHHHHHhhhccccccceeeccCccCcccccCCCCceeEEEEeeCCeeeecccCCceeeE---eccCCc
Q psy16318 178 TVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGI---LLDKSN 254 (474)
Q Consensus 178 ~~~dtyG~P~~l~~~~~~e~~~~v~~~~f~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~G~~~~i---vld~Tp 254 (474)
| ||||||+||+.++|+|+|+.||..+|+ ++|+ .|+ .... ...+.. .+ +....- +...|.
T Consensus 392 y--dTyGfP~dlt~~~a~e~g~~vd~~~F~---~~~~--~~~------~~sr--~~~~~~-~~--~~~~~~~~~~~~~t~ 453 (851)
T TIGR00344 392 Y--DTYGFPVELTKEIAEERGLTVDIPGFE---TLMA--EQR------ERSK--AASQTI-SF--ELQEIALANVYPATE 453 (851)
T ss_pred H--HccCCCHHHHHHHHHHcCCccCHHHHH---HHHH--HHH------HHHh--hhhhcc-cc--cccHHHHhcccCCcc
Confidence 9 999999999999999999999999887 4565 443 1110 000000 00 000000 011233
Q ss_pred cccccCCeeeecceEEeeecceeEEEeeecceeeeeeecCCeEEEEEecccceeccCCCcCccceeecceeeeeeeccCC
Q psy16318 255 FYAEQGGQIYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTE 334 (474)
Q Consensus 255 FYAE~GGQv~D~G~i~~~~~kskVlav~k~~~~~~~v~~g~~~~l~vD~t~~y~~~Ggqv~d~Gsl~~~~~~~~v~~v~~ 334 (474)
|. -+| .....++|+++.+++..+..+..|+...+++|+|+|||++||||+|+|.|..
T Consensus 454 ~l------~Y~-----~~~~~a~V~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~------------ 510 (851)
T TIGR00344 454 FL------GYE-----DLEFEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAESGGQIGDTGYLIA------------ 510 (851)
T ss_pred cc------cee-----cccccEEEEEEEeCCccceecccCCceEEEEeCCCCCCCCCCCCCCEEEEec------------
Confidence 31 011 1346789999987776777777888889999999999999999999998822
Q ss_pred ceEEecccccccCCCCccceeeeeeecCCcchhhhhhhhcccccCCCCCCCceeeEEEEeEEEeCCEEEEEEee-ccccC
Q psy16318 335 AGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTL-SHTLR 413 (474)
Q Consensus 335 ~~lrfDfT~f~p~~ggq~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~k~~~~ivH~~~~-~~~l~ 413 (474)
++ ..+.|.+|++.++.++|.+.. .+.+.
T Consensus 511 ---------------------------~~------------------------~~~~V~dv~~~~g~i~H~~~~~~g~l~ 539 (851)
T TIGR00344 511 ---------------------------ND------------------------GKFRVVDVQKPNGVVFHFGEVEGGSLK 539 (851)
T ss_pred ---------------------------CC------------------------cEEEEEEEEEECCEEEEEEEeccCCCC
Confidence 11 247899999999999999866 45789
Q ss_pred CCCEEEEEEcHHhHHHHHHhhHHHHHHHHHHHHHcCCCceeeccccCCCeEEEEccc
Q psy16318 414 VGDKLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIME 470 (474)
Q Consensus 414 vGd~V~~~ID~~rR~~imrnHTAtHLL~~ALr~vlg~~v~q~Gs~v~~~~lr~d~~~ 470 (474)
+|++|.+.|||+||+.+|+||||+|||++||+++||.|+||+||+++++++|+||..
T Consensus 540 ~G~~V~~~VD~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~ 596 (851)
T TIGR00344 540 VGDKVIAVIDEKRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSH 596 (851)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999964
No 4
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.1e-40 Score=361.99 Aligned_cols=210 Identities=28% Similarity=0.433 Sum_probs=172.4
Q ss_pred CCccCcceeeeeeccCCCcHHhHHHHHHHcCceecHHHHHHHHHHhhcCCCcccCCccceeEecceeecccccccccccc
Q psy16318 11 SKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQAGMETSVEFCGGTHLAMAHHVGDFCIS 90 (474)
Q Consensus 11 ~~~l~G~~aF~LydTyGfP~dlt~~ia~e~g~~vD~~~f~~~m~~q~~~~~sr~~~~~~~~f~g~thlal~~~lg~~~~~ 90 (474)
+++|||++||+||||||||+|||++||+|+|++||+++|+.+|++||++ ||+++..
T Consensus 383 ~~~l~ge~afkLYDTyGfP~eLt~eia~e~g~~VD~~~f~~~m~~qr~~--ar~~~~~---------------------- 438 (879)
T COG0013 383 SKTLDGEDAFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRER--ARASAGS---------------------- 438 (879)
T ss_pred CCccChHHheeehhcCCCCHHHHHHHHHHcCCeeccccHHHHHHHHHHH--hhhcccc----------------------
Confidence 5689999999999999999999999999999999999999999999999 8764311
Q ss_pred hhhhhhccceeeeccCCceeeecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCcccccccccc
Q psy16318 91 SEEAIAKGSNIVSYCGSKGTFQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWTGVAI 170 (474)
Q Consensus 91 ~~~~~q~gs~v~~~~~~klrFfs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~~~~ls 170 (474)
+... .+ ....+++
T Consensus 439 -------~~~~-~~-------------------~~~~~~~---------------------------------------- 451 (879)
T COG0013 439 -------GEGA-KE-------------------SEDLELI---------------------------------------- 451 (879)
T ss_pred -------cccc-ch-------------------hhhhhhh----------------------------------------
Confidence 0000 00 0000000
Q ss_pred CCcccccccCCCCCCCchhhHHHHHhhhccccccceeeccCccCcccccCCCCceeEEEEeeCCeeeecccCCceeeEec
Q psy16318 171 GALPFGLTVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGILL 250 (474)
Q Consensus 171 ge~~F~L~~~dtyG~P~~l~~~~~~e~~~~v~~~~f~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~G~~~~ivl 250 (474)
+. ...+.|.||+. .. .+. ++++|+.++..++++++|++++|||
T Consensus 452 ----------~~------------------~~~tef~gY~~-~~--~~~------~i~~l~~~~~~v~~~~~g~~~~vVl 494 (879)
T COG0013 452 ----------DK------------------LPETEFLGYDD-LE--MEF------KVLVLFVDGKEVSELNEGQEVYVVL 494 (879)
T ss_pred ----------cc------------------CCCceeeeccc-cc--ceE------EEEEEEecCcccccccCCceEEEEE
Confidence 00 11235777767 33 445 9999998887799999999999999
Q ss_pred cCCccccccCCeeeecceEEeee-cceeEEEeeecc--eeee-------eeecCCeEEEEEecccce-------------
Q psy16318 251 DKSNFYAEQGGQIYDEGFMIGVN-DEGTVVGLRYNK--QFVD-------SVSSGTEAGILLDKSNFY------------- 307 (474)
Q Consensus 251 d~TpFYAE~GGQv~D~G~i~~~~-~kskVlav~k~~--~~~~-------~v~~g~~~~l~vD~t~~y------------- 307 (474)
|+||||||||||+||+|+|...+ ....|.++++.. .++| .+++|++|.+.+|..+|+
T Consensus 495 d~TpFYaEsGGQ~~D~G~i~~~~~~~~~V~dvqK~~~~~~vH~~~~~~G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh 574 (879)
T COG0013 495 DQTPFYAESGGQVGDTGYIFGDGGGRFEVTDVQKVGNGVIVHKGKVESGELKVGDEVTAEVDEERRRRLMRNHTATHLLH 574 (879)
T ss_pred ecCCccCCCCCccCceEEEEecCCcEEEEEEEEEcCCceEEEEEeeccCccCCCCEEEEEECHHHHHHHHhhChHHHHHH
Confidence 99999999999999999999874 789999999875 4555 567899999999999997
Q ss_pred ----eccCCCcCccceeecceeeeeeeccCCceEEecccccccCCCCccceeeeee
Q psy16318 308 ----AEQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMI 359 (474)
Q Consensus 308 ----~~~Ggqv~d~Gsl~~~~~~~~v~~v~~~~lrfDfT~f~p~~ggq~~d~g~~~ 359 (474)
.++|.|+.|+||+ |+++++|||||||.|+|.+|+..+|.+.
T Consensus 575 ~ALr~VLG~hV~QaGSl-----------v~~~~lRfDfsH~~~it~Eel~~IE~~v 619 (879)
T COG0013 575 AALRKVLGDHVWQAGSL-----------VDPEKLRFDFSHYKALTAEELKEIERLV 619 (879)
T ss_pred HHHHHHhCccceecCcc-----------cCCCeeEEeecCCCCCCHHHHHHHHHHH
Confidence 4559999999999 9999999999999999999999999874
No 5
>KOG0188|consensus
Probab=100.00 E-value=5.1e-40 Score=351.87 Aligned_cols=260 Identities=33% Similarity=0.437 Sum_probs=214.5
Q ss_pred cee-eecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCccccc--------cccccCCcccccc
Q psy16318 108 KGT-FQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGW--------TGVAIGALPFGLT 178 (474)
Q Consensus 108 klr-Ffs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~--------~~~lsge~~F~L~ 178 (474)
.+- |-++++.+....-+.||+|. .++..|...++.||..|.+||++|.++++ .++|+|+.+|.||
T Consensus 328 ~~g~~~~LVpvvv~~lgd~fPEl~------~~~~~v~diineEE~~F~ktl~rg~~~f~r~~~~~~~s~tipGd~~w~Ly 401 (895)
T KOG0188|consen 328 PPGFFSTLVPVVVETLGDAFPELK------RDPQHVIDIINEEEAQFLKTLDRGRKLFDRVARELGSSKTIPGDVAWRLY 401 (895)
T ss_pred CcchhhhhhHHHHHHHhhhchhhh------cCHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchHHHHHHH
Confidence 444 48899999999999999998 88899999999999999999999999887 4789999999999
Q ss_pred cCCCCCCCchhhHHHHHhhhccccccceeeccCccCcccccCCCCceeEEEEeeCCeeeecccCCceeeEeccC------
Q psy16318 179 VPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGILLDK------ 252 (474)
Q Consensus 179 ~~dtyG~P~~l~~~~~~e~~~~v~~~~f~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~G~~~~ivld~------ 252 (474)
||||||.||+..+|.|+|+.+|..+|+. ...++|. ++ ..++ +....|-||.
T Consensus 402 --dTyGfPvdlt~lmAee~gl~iD~~~fE~----ar~~A~~--~S-------k~~~--------~~~~~i~ldvl~el~p 458 (895)
T KOG0188|consen 402 --DTYGFPVDLTELMAEEKGLKIDETGFEA----ARQEAQE--KS-------KGAG--------GGKLSIDLDVLSELVP 458 (895)
T ss_pred --hhcCCcHHHHHHHHHHhCCccCchhHHH----HHHHHHH--HH-------hccC--------CCCCcccHHHHHhhCC
Confidence 9999999999999999999999999992 1101221 00 0000 0111133333
Q ss_pred ----CccccccCCeeeecceEEeeecceeEEEeeecceeeeeeecCCeEEEEEecccceeccCCCcCccceeecceeeee
Q psy16318 253 ----SNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDS 328 (474)
Q Consensus 253 ----TpFYAE~GGQv~D~G~i~~~~~kskVlav~k~~~~~~~v~~g~~~~l~vD~t~~y~~~Ggqv~d~Gsl~~~~~~~~ 328 (474)
+|-|.+ ....+++|++++.+++++..+..|++..+++|+|+||+|+|||++|+|-|..
T Consensus 459 ~TdDs~KY~~------------~~~~~~~il~l~~e~~~v~~~~~g~~~givldktnFYaEqGGQ~~D~G~lv~------ 520 (895)
T KOG0188|consen 459 PTDDSFKYNE------------FGVCKTRILALYREDQFVESIPKGQECGIVLDKTNFYAEQGGQIYDTGKLVI------ 520 (895)
T ss_pred CCCCcccccc------------CccchhhhhhhhcCCceeeecCCCceEEEEeecceeehhcCCcccccceEEE------
Confidence 344552 3456889999999999999999999999999999999999999999999833
Q ss_pred eeccCCceEEecccccccCCCCccceeeeeeecCCcchhhhhhhhcccccCCCCCCCceeeEEEEeEEEeCCEEEEEEee
Q psy16318 329 VSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTL 408 (474)
Q Consensus 329 v~~v~~~~lrfDfT~f~p~~ggq~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~k~~~~ivH~~~~ 408 (474)
.++.. ..|.|..++- +|+++|++..
T Consensus 521 --------------------------------~~~~~----------------------~~fnV~~~~~-gg~vvh~g~l 545 (895)
T KOG0188|consen 521 --------------------------------DGDED----------------------FVFNVKRVQV-GGYVVHIGVL 545 (895)
T ss_pred --------------------------------ecCcc----------------------ceeehhhccc-CCEEEEEeee
Confidence 11111 2466776666 8999999988
Q ss_pred ccccCCCCEEEEEEcHHhHHHHHHhhHHHHHHHHHHHHHcCCCceeeccccCCCeEEEEccc
Q psy16318 409 SHTLRVGDKLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIME 470 (474)
Q Consensus 409 ~~~l~vGd~V~~~ID~~rR~~imrnHTAtHLL~~ALr~vlg~~v~q~Gs~v~~~~lr~d~~~ 470 (474)
.+.+++||+|.+.+|.+||..+|+|||||||||+|||++| ....|+||+|.||++||||.-
T Consensus 546 ~~~l~vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l-~~t~QkGSlV~pdklRfDf~~ 606 (895)
T KOG0188|consen 546 EGDLSVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVL-KGTDQKGSLVAPDKLRFDFST 606 (895)
T ss_pred ccccccchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhc-ccccccccccChhHeeeeccc
Confidence 8999999999999999999999999999999999999999 579999999999999999963
No 6
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.9e-39 Score=364.56 Aligned_cols=264 Identities=30% Similarity=0.407 Sum_probs=213.1
Q ss_pred eeeecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCcccccc--------ccccCCcccccccC
Q psy16318 109 GTFQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWT--------GVAIGALPFGLTVP 180 (474)
Q Consensus 109 lrFfs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~~--------~~lsge~~F~L~~~ 180 (474)
++|.++++.+.+.+...||+|. .++..|..+|+.||..|.+||++|.+.|+. +.++|+.+|+||
T Consensus 315 ~~l~~lv~~~~~~~~~~ypel~------~~~~~i~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~~~~~~l~g~~~f~Ly-- 386 (865)
T PRK00252 315 PFLYKLVPVVIDEMGDAYPELK------EKQDLIEKVLKAEEERFLKTLERGLKLLEEALAKLKAGKVLSGEDAFKLY-- 386 (865)
T ss_pred hHHHHHHHHHHHHHhhhChhhH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCHHHHHHHH--
Confidence 3449999999999999999998 788999999999999999999999998871 369999999999
Q ss_pred CCCCCCchhhHHHHHhhhccccccceeeccCccCcccccCCCCceeEEEEeeCCeeeecccCCceeeEecc-CCcccccc
Q psy16318 181 LTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGILLD-KSNFYAEQ 259 (474)
Q Consensus 181 dtyG~P~~l~~~~~~e~~~~v~~~~f~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~G~~~~ivld-~TpFYAE~ 259 (474)
||||||+||+.++|+++|+.||..+|. +.|+ .|. .++ +.. .......... + .+..+ .|.|+
T Consensus 387 dtyGfP~dlt~~~a~e~g~~vd~~~f~---~~~~--~~~-~~s--~~~--~~~~~~~~~~---~--~~~~~~~t~f~--- 448 (865)
T PRK00252 387 DTYGFPLDLTAEIARERGLTVDEEGFE---AAME--EQR-ERA--RAA--RKFKGDYNAL---E--ELLDDLATEFV--- 448 (865)
T ss_pred hccCCCHHHHHHHHHHcCCCcCHHHHH---HHHH--HHH-HHH--Hhh--hhcccchhHH---H--HHhhcCCCeee---
Confidence 999999999999999999999998887 4554 332 100 000 0000000000 0 00000 35551
Q ss_pred CCeeeecceEEeeecceeEEEeeecceeeeeeecCCeEEEEEecccceeccCCCcCccceeecceeeeeeeccCCceEEe
Q psy16318 260 GGQIYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEAGILL 339 (474)
Q Consensus 260 GGQv~D~G~i~~~~~kskVlav~k~~~~~~~v~~g~~~~l~vD~t~~y~~~Ggqv~d~Gsl~~~~~~~~v~~v~~~~lrf 339 (474)
|| .....+++|++++.+++++..+..|+...+++|+|+|||++||||+|+|.|..
T Consensus 449 -------~Y-~~~~~~a~v~~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~----------------- 503 (865)
T PRK00252 449 -------GY-DTLEAEAKVLALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTGVIED----------------- 503 (865)
T ss_pred -------ee-eeccccEEEEEEEeCCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEee-----------------
Confidence 23 12456899999998777888888899899999999999999999999999811
Q ss_pred cccccccCCCCccceeeeeeecCCcchhhhhhhhcccccCCCCCCCceeeEEEEeEEEe-CCEEEEEEee-ccccCCCCE
Q psy16318 340 DKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKK-KKLVKLLHTL-SHTLRVGDK 417 (474)
Q Consensus 340 DfT~f~p~~ggq~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~k~-~~~ivH~~~~-~~~l~vGd~ 417 (474)
+ ..+.|.+|++. ++.++|.+.. ++.+.+|++
T Consensus 504 -----------------------~------------------------~~~~V~~v~~~~~g~i~H~~~~~~~~l~~G~~ 536 (865)
T PRK00252 504 -----------------------G------------------------GVFEVTDTQKPPNGLIVHRGKVEEGELKVGDE 536 (865)
T ss_pred -----------------------C------------------------cEEEEEEEEEccCCEEEEEEEeccCCCCCCCE
Confidence 1 24789999997 9999999976 567899999
Q ss_pred EEEEEcHHhHHHHHHhhHHHHHHHHHHHHHcCCCceeeccccCCCeEEEEccc
Q psy16318 418 LKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIME 470 (474)
Q Consensus 418 V~~~ID~~rR~~imrnHTAtHLL~~ALr~vlg~~v~q~Gs~v~~~~lr~d~~~ 470 (474)
|.+.|||+||+.+|++|||+|||++||++++|.|++|+||+++++++|+||..
T Consensus 537 V~~~ID~~rR~~~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~~~~~r~Df~~ 589 (865)
T PRK00252 537 VTAEVDEERRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSH 589 (865)
T ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeccCcccCCeEEEEeec
Confidence 99999999999999999999999999999999999999999999999999964
No 7
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=9.2e-38 Score=352.64 Aligned_cols=251 Identities=23% Similarity=0.256 Sum_probs=186.2
Q ss_pred eecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCccccc-----cccccCCcccccccCCCCCC
Q psy16318 111 FQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGW-----TGVAIGALPFGLTVPLTFGP 185 (474)
Q Consensus 111 Ffs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~-----~~~lsge~~F~L~~~dtyG~ 185 (474)
|..+++.+.+.+...||++. .++..|..+|..||..|.+||++|.++++ .+.++++.+|.|| |||||
T Consensus 377 l~~lv~~~~~~~~~~ypel~------~~~~~I~~ii~~Ee~~f~~Tl~~G~~~~~~~~~~~~~i~g~~~f~Ly--DTyGf 448 (902)
T TIGR03683 377 LSDLVEMQLEELKKIYPELK------ENKDYILDILDLEEEKYRETLERGRRIVERLLKTKKEIPLDDLIELY--DSHGI 448 (902)
T ss_pred HHHHHHHHHHHHhhhChhHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHH--HccCC
Confidence 67888888899999999998 78899999999999999999999999887 2459999999999 99999
Q ss_pred CchhhHHHHHhhhcccccc-ceeeccCccCcccccCCCCceeEEEEeeCCeeeecccCCceeeEeccCCccccccCCeee
Q psy16318 186 SLGLVFLAVAEFLFLVSSC-GFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIY 264 (474)
Q Consensus 186 P~~l~~~~~~e~~~~v~~~-~f~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~G~~~~ivld~TpFYAE~GGQv~ 264 (474)
|+||+.++|+++|+.||.. +|. +.|+ .|. . .. .......... ++...-+..|.|.. +
T Consensus 449 P~dl~~eia~e~g~~vd~~~~F~---~~~~--~~~-~-----~~--~~~~~~~~~~---~~~~~~~~~T~~l~------y 506 (902)
T TIGR03683 449 PPEIVKEIAAELGAEVEIPDNFY---SIVA--ERH-E-----KE--EKEEELPKDY---EERAKDLPETRRLF------Y 506 (902)
T ss_pred CHHHHHHHHHHcCCcccCCccHH---HHHH--HHH-H-----HH--Hhccccccch---hHHHhcCCCceEec------c
Confidence 9999999999999999998 777 3454 332 0 00 0000000000 00000112233200 1
Q ss_pred ecceEEeeecceeEEEeeecceeeeeeecCCeEEEEEecccceeccCCCcCccceeecceeeeeeeccCCceEEeccccc
Q psy16318 265 DEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNF 344 (474)
Q Consensus 265 D~G~i~~~~~kskVlav~k~~~~~~~v~~g~~~~l~vD~t~~y~~~Ggqv~d~Gsl~~~~~~~~v~~v~~~~lrfDfT~f 344 (474)
+.-++ ...+++|+++.. ..+++|+|+|||++||||+|+|.|
T Consensus 507 ~~~~~--~e~~a~Vl~i~~-------------~~vvLd~T~FYpEgGGQ~~D~G~I------------------------ 547 (902)
T TIGR03683 507 EDPTM--REFEAKVLGVFD-------------NYVVLDQTAFYPEGGGQPADTGYL------------------------ 547 (902)
T ss_pred ccCcc--ceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEE------------------------
Confidence 11111 123455554431 246666666666666666666666
Q ss_pred ccCCCCccceeeeeeecCCcchhhhhhhhcccccCCCCCCCceeeEEEEeEEEeCCEEEEEEeeccccCCCCEEEEEEcH
Q psy16318 345 YAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKLHIDT 424 (474)
Q Consensus 345 ~p~~ggq~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~k~~~~ivH~~~~~~~l~vGd~V~~~ID~ 424 (474)
... + ..+.|.+|++.++.++|.+. .+.+.+|++|.+.|||
T Consensus 548 --------------~~~-~------------------------~~~~V~dv~k~~g~i~H~~~-~~~l~~G~~V~~~VD~ 587 (902)
T TIGR03683 548 --------------ITN-G------------------------GKIRVVDVQKVGGVIVHKVD-GEGIKEGDEVKGEIDW 587 (902)
T ss_pred --------------EeC-C------------------------cEEEEEEEEEECCEEEEEeC-CCCCCCCCEEEEEECH
Confidence 211 1 24789999999999999986 3348999999999999
Q ss_pred HhHHHHHHhhHHHHHHHHHHHHHcCCCceeeccccCCCeEEEEccc
Q psy16318 425 ARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIME 470 (474)
Q Consensus 425 ~rR~~imrnHTAtHLL~~ALr~vlg~~v~q~Gs~v~~~~lr~d~~~ 470 (474)
+||+.+|+||||||||++||+++||.|+||+||+++++++||||..
T Consensus 588 ~rR~~~m~~HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~ 633 (902)
T TIGR03683 588 ERRLRLMRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITH 633 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeC
Confidence 9999999999999999999999999999999999999999999973
No 8
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.1e-37 Score=348.29 Aligned_cols=251 Identities=22% Similarity=0.245 Sum_probs=186.5
Q ss_pred eecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCcccccc-----ccccCCcccccccCCCCCC
Q psy16318 111 FQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWT-----GVAIGALPFGLTVPLTFGP 185 (474)
Q Consensus 111 Ffs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~~-----~~lsge~~F~L~~~dtyG~ 185 (474)
|..+++.+.+.+...||+|. .++..|..+|..||..|.+||++|.++++. +.++++.+|+|| |||||
T Consensus 373 l~~lv~~~~~~~~~~ypel~------~~~~~I~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~~~l~g~~~f~LY--Dt~G~ 444 (900)
T PRK13902 373 LSELVDMQIDELKEDYPELK------ENRDYILDIVDLEEEKYRETLERGKRIVERLAKKKEEIPLDDLIELY--DSHGI 444 (900)
T ss_pred HHHHHHHHHHHHhhhChhHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhhhh--hcCCC
Confidence 67888888889999999998 788999999999999999999999998872 679999999999 99999
Q ss_pred CchhhHHHHHhhhccccc-cceeeccCccCcccccCCCCceeEEEEeeCCeeeecccCCceeeEeccCCccccccCCeee
Q psy16318 186 SLGLVFLAVAEFLFLVSS-CGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIY 264 (474)
Q Consensus 186 P~~l~~~~~~e~~~~v~~-~~f~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~G~~~~ivld~TpFYAE~GGQv~ 264 (474)
|+||+.++|+++|+.||. .+|. +.|+ .|. .++ ..+ ..... .-+....-+..|.|. -+
T Consensus 445 P~dl~~eia~e~g~~vd~p~~F~---~~~~--~~~-~~~---~~~---~~~~~----~~~~~~~~~~~T~~l------~y 502 (900)
T PRK13902 445 PPEIVKEIAKKKGVEVEVPDNFY---SLVA--ERH-EKA---EEE---EEEPV----VEEERLKDLPETEKL------FY 502 (900)
T ss_pred CHHHHHHHHHHcCCccCchhhHH---HHHH--HHH-HHH---hhc---ccccc----chhhHhhcCCCceEe------cc
Confidence 999999999999999998 7887 3454 322 000 000 00000 000000011233321 01
Q ss_pred ecceEEeeecceeEEEeeecceeeeeeecCCeEEEEEecccceeccCCCcCccceeecceeeeeeeccCCceEEeccccc
Q psy16318 265 DEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNF 344 (474)
Q Consensus 265 D~G~i~~~~~kskVlav~k~~~~~~~v~~g~~~~l~vD~t~~y~~~Ggqv~d~Gsl~~~~~~~~v~~v~~~~lrfDfT~f 344 (474)
+.-++ ...+++|+++.. ..+++|+|+|||++||||+|.|.|
T Consensus 503 ~~~~~--~~~~a~Vl~i~~-------------~~vvLD~T~FYpEgGGQ~~D~G~I------------------------ 543 (900)
T PRK13902 503 EDPYM--REFEAKVLGVID-------------NYVVLDQTAFYPEGGGQPADTGVL------------------------ 543 (900)
T ss_pred ccCcc--ceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEE------------------------
Confidence 11111 123455555531 256677777777777777776666
Q ss_pred ccCCCCccceeeeeeecCCcchhhhhhhhcccccCCCCCCCceeeEEEEeEEEeCCEEEEEEeeccccCCCCEEEEEEcH
Q psy16318 345 YAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKLHIDT 424 (474)
Q Consensus 345 ~p~~ggq~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~k~~~~ivH~~~~~~~l~vGd~V~~~ID~ 424 (474)
... + ..+.|.+|++.++.++|.+.. +.+.+|+.|.++|||
T Consensus 544 --------------~~~-~------------------------~~~~V~dv~k~~g~i~H~~~~-~~~~~G~~V~~~VD~ 583 (900)
T PRK13902 544 --------------IVD-G------------------------KGYKVVDVQKVGGVIVHVLEG-EPPKKGDEVRGEIDW 583 (900)
T ss_pred --------------EeC-C------------------------cEEEEEEEEEECCEEEEEeCC-CCCCCCCEEEEEECH
Confidence 211 1 247899999999999999852 344569999999999
Q ss_pred HhHHHHHHhhHHHHHHHHHHHHHcCCCceeeccccCCCeEEEEccc
Q psy16318 425 ARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIME 470 (474)
Q Consensus 425 ~rR~~imrnHTAtHLL~~ALr~vlg~~v~q~Gs~v~~~~lr~d~~~ 470 (474)
+||+.+|+||||||||++||+++||.|+||+||++.++++||||.-
T Consensus 584 ~rR~~~mr~HTAtHLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~ 629 (900)
T PRK13902 584 ERRYRLMRHHTATHIILAAARKVLGDHVWQAGAQKTVDKARLDITH 629 (900)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999973
No 9
>PLN02900 alanyl-tRNA synthetase
Probab=99.97 E-value=5.5e-32 Score=306.28 Aligned_cols=216 Identities=31% Similarity=0.387 Sum_probs=166.3
Q ss_pred CCccCcceeeeeeccCCCcHHhHHHHHHHcCceecHHHHHHHHHHhhcCCCcccCCccceeEecceeecccccccccccc
Q psy16318 11 SKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQAGMETSVEFCGGTHLAMAHHVGDFCIS 90 (474)
Q Consensus 11 ~~~l~G~~aF~LydTyGfP~dlt~~ia~e~g~~vD~~~f~~~m~~q~~~~~sr~~~~~~~~f~g~thlal~~~lg~~~~~ 90 (474)
.+.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++ ||++++.+ ..
T Consensus 408 ~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~F~~~~~~~~~~--s~~~~~~~----------------~~--- 466 (936)
T PLN02900 408 GPVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARER--SRAAHLKA----------------GG--- 466 (936)
T ss_pred CCcCCHHHHHHHHhccCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHH--HHhhhhcc----------------cc---
Confidence 4679999999999999999999999999999999999999999999999 87654210 00
Q ss_pred hhhhhhccceeeeccCCceeeecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCcccccccccc
Q psy16318 91 SEEAIAKGSNIVSYCGSKGTFQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWTGVAI 170 (474)
Q Consensus 91 ~~~~~q~gs~v~~~~~~klrFfs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~~~~ls 170 (474)
+ ..... ...+..+. ..+ +.
T Consensus 467 ------~-~~~~~-------------------~~~~~~~~---------------------------~~~--------~~ 485 (936)
T PLN02900 467 ------G-AIELA-------------------AEATSWLQ---------------------------KQG--------VA 485 (936)
T ss_pred ------c-ccccc-------------------HHHHHHHH---------------------------hcc--------CC
Confidence 0 00000 00000000 000 00
Q ss_pred CCcccccccCCCCCCCchhhHHHHHhhhccccccceeeccCccCcccccCCCCceeEEEEeeCCeeeecccCCceeeEec
Q psy16318 171 GALPFGLTVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGILL 250 (474)
Q Consensus 171 ge~~F~L~~~dtyG~P~~l~~~~~~e~~~~v~~~~f~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~G~~~~ivl 250 (474)
+ .+.|.||+..-+ .++ +|++++.+++.++++.+|+.+.|+|
T Consensus 486 ~-------------------------------~t~f~gY~~~~~--~~~------~v~~i~~~~~~v~~~~~g~~~~vvL 526 (936)
T PLN02900 486 A-------------------------------TDDFLKYDWLSD--HEA------VVKAILTGGGFVESVSEGDEVGIVL 526 (936)
T ss_pred C-------------------------------CCcccccccCCc--cce------EEEEEEECCceeeeccCCCeEEEEE
Confidence 0 123566656321 345 9999999888999999999999999
Q ss_pred cCCccccccCCeeeecceEEeeec-ceeEEEeeecc-eeeee-------eecCCeEEEEEecccce--------------
Q psy16318 251 DKSNFYAEQGGQIYDEGFMIGVND-EGTVVGLRYNK-QFVDS-------VSSGTEAGILLDKSNFY-------------- 307 (474)
Q Consensus 251 d~TpFYAE~GGQv~D~G~i~~~~~-kskVlav~k~~-~~~~~-------v~~g~~~~l~vD~t~~y-------------- 307 (474)
|+||||||+|||.+|+|+|...+. ...|.++++.+ .++|. +..|++|.+.+|..+|+
T Consensus 527 d~T~FYpEgGGQp~D~G~I~~~~~~~~~V~dv~k~~g~i~H~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~a 606 (936)
T PLN02900 527 DKTSFYAESGGQIGDTGVLEGSGGAVVEVSDVQKAGGFVLHIGTVTEGSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNS 606 (936)
T ss_pred eCCCCCCCCCCCCCCEEEEecCCCCEEEEEEEEEECCEEEEEEEeccCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986655 67888887754 45553 34699999999999998
Q ss_pred ---eccCCCcCccceeecceeeeeeeccCCceEEecccccccCCCCccceeeee
Q psy16318 308 ---AEQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 358 (474)
Q Consensus 308 ---~~~Ggqv~d~Gsl~~~~~~~~v~~v~~~~lrfDfT~f~p~~ggq~~d~g~~ 358 (474)
...|.++.|.|+. +.++++||||+|+.|++.+++..+|..
T Consensus 607 ALr~vlG~~v~q~Gs~-----------v~~d~~r~Df~~~~~lt~eel~~IE~~ 649 (936)
T PLN02900 607 ALKEVLGDHVDQKGSL-----------VAFEKLRFDFSHGKPMTPEELREVESL 649 (936)
T ss_pred HHHHHcCCcEEecccc-----------ccCCeEEEEeeCCCCCCHHHHHHHHHH
Confidence 3349999999998 789999999999999999999888876
No 10
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=99.97 E-value=4.8e-31 Score=297.29 Aligned_cols=207 Identities=27% Similarity=0.422 Sum_probs=163.6
Q ss_pred CCccCcceeeeeeccCCCcHHhHHHHHHHcCceecHHHHHHHHHHhhcCCCcccCCccceeEecceeecccccccccccc
Q psy16318 11 SKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQAGMETSVEFCGGTHLAMAHHVGDFCIS 90 (474)
Q Consensus 11 ~~~l~G~~aF~LydTyGfP~dlt~~ia~e~g~~vD~~~f~~~m~~q~~~~~sr~~~~~~~~f~g~thlal~~~lg~~~~~ 90 (474)
++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||+| ||++++.+
T Consensus 380 ~~~i~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~F~~~~~~~~~~--sr~~~~~~--------------------- 436 (851)
T TIGR00344 380 KKELDGEDAFKLYDTYGFPVELTKEIAEERGLTVDIPGFETLMAEQRER--SKAASQTI--------------------- 436 (851)
T ss_pred CCccCHHHHHHHHHccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHH--Hhhhhhcc---------------------
Confidence 4579999999999999999999999999999999999999999999999 88765320
Q ss_pred hhhhhhccceeeeccCCceeeecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCcccccccccc
Q psy16318 91 SEEAIAKGSNIVSYCGSKGTFQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWTGVAI 170 (474)
Q Consensus 91 ~~~~~q~gs~v~~~~~~klrFfs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~~~~ls 170 (474)
+ . .. .+..+. + ..
T Consensus 437 -------~-~--~~--------------------~~~~~~---------------------------~----------~~ 449 (851)
T TIGR00344 437 -------S-F--EL--------------------QEIALA---------------------------N----------VY 449 (851)
T ss_pred -------c-c--cc--------------------cHHHHh---------------------------c----------cc
Confidence 0 0 00 000000 0 00
Q ss_pred CCcccccccCCCCCCCchhhHHHHHhhhccccccceeeccCccCcccccCCCCceeEEEEeeCCeeeecccCCceeeEec
Q psy16318 171 GALPFGLTVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGILL 250 (474)
Q Consensus 171 ge~~F~L~~~dtyG~P~~l~~~~~~e~~~~v~~~~f~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~G~~~~ivl 250 (474)
+.+ .|.+|+. .+ .++ +|+++..+++.++++.+|+.+.|+|
T Consensus 450 ~~t-------------------------------~~l~Y~~-~~--~~a------~V~~i~~~~~~v~~~~~g~~~~vvL 489 (851)
T TIGR00344 450 PAT-------------------------------EFLGYED-LE--FEA------KVIGLFEDGKPVDEAEAGQSVYVIL 489 (851)
T ss_pred CCc-------------------------------cccceec-cc--ccE------EEEEEEeCCccceecccCCceEEEE
Confidence 011 1333333 33 455 9999998888899999999999999
Q ss_pred cCCccccccCCeeeecceEEeeecceeEEEeeecc-eeeee-------eecCCeEEEEEecccce---------------
Q psy16318 251 DKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNK-QFVDS-------VSSGTEAGILLDKSNFY--------------- 307 (474)
Q Consensus 251 d~TpFYAE~GGQv~D~G~i~~~~~kskVlav~k~~-~~~~~-------v~~g~~~~l~vD~t~~y--------------- 307 (474)
|+||||||+|||.+|+|+|..++....|.++++.+ .++|. +..|++|.+.+|..+|+
T Consensus 490 d~T~FYpEgGGQp~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aA 569 (851)
T TIGR00344 490 DQTPFYAESGGQIGDTGYLIANDGKFRVVDVQKPNGVVFHFGEVEGGSLKVGDKVIAVIDEKRRLRIMRNHSATHLLHAA 569 (851)
T ss_pred eCCCCCCCCCCCCCCEEEEecCCcEEEEEEEEEECCEEEEEEEeccCCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998665678899888764 45553 34689999999999997
Q ss_pred --eccCCCcCccceeecceeeeeeeccCCceEEecccccccCCCCccceeeee
Q psy16318 308 --AEQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 358 (474)
Q Consensus 308 --~~~Ggqv~d~Gsl~~~~~~~~v~~v~~~~lrfDfT~f~p~~ggq~~d~g~~ 358 (474)
...|.++.|.|+. +.++++||||+++.|++.+++..+|..
T Consensus 570 L~~vlg~~v~q~Gs~-----------v~~d~~r~Df~~~~~lt~eel~~IE~~ 611 (851)
T TIGR00344 570 LQKVLGNHVWQAGSL-----------VSVKKLRFDFSHYRALTREELEKIEDL 611 (851)
T ss_pred HHHHhCCceEeccCc-----------ccCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 2348899999998 889999999999999999998888765
No 11
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=4.4e-30 Score=290.30 Aligned_cols=204 Identities=31% Similarity=0.459 Sum_probs=163.8
Q ss_pred CccCcceeeeeeccCCCcHHhHHHHHHHcCceecHHHHHHHHHHhhcCCCcccCCccceeEecceeecccccccccccch
Q psy16318 12 KVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQAGMETSVEFCGGTHLAMAHHVGDFCISS 91 (474)
Q Consensus 12 ~~l~G~~aF~LydTyGfP~dlt~~ia~e~g~~vD~~~f~~~m~~q~~~~~sr~~~~~~~~f~g~thlal~~~lg~~~~~~ 91 (474)
+.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++ ||+.++..
T Consensus 375 ~~l~g~~~f~LydtyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~--s~~~~~~~---------------------- 430 (865)
T PRK00252 375 KVLSGEDAFKLYDTYGFPLDLTAEIARERGLTVDEEGFEAAMEEQRER--ARAARKFK---------------------- 430 (865)
T ss_pred CccCHHHHHHHHhccCCCHHHHHHHHHHcCCCcCHHHHHHHHHHHHHH--HHhhhhcc----------------------
Confidence 579999999999999999999999999999999999999999999999 77654210
Q ss_pred hhhhhccceeeeccCCceeeecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCccccccccccC
Q psy16318 92 EEAIAKGSNIVSYCGSKGTFQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWTGVAIG 171 (474)
Q Consensus 92 ~~~~q~gs~v~~~~~~klrFfs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~~~~lsg 171 (474)
++. ..+..+. .
T Consensus 431 ------~~~-----------------------~~~~~~~---------------------------~------------- 441 (865)
T PRK00252 431 ------GDY-----------------------NALEELL---------------------------D------------- 441 (865)
T ss_pred ------cch-----------------------hHHHHHh---------------------------h-------------
Confidence 000 0000000 0
Q ss_pred CcccccccCCCCCCCchhhHHHHHhhhccccccceeeccCccCcccccCCCCceeEEEEeeCCeeeecccCCceeeEecc
Q psy16318 172 ALPFGLTVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGILLD 251 (474)
Q Consensus 172 e~~F~L~~~dtyG~P~~l~~~~~~e~~~~v~~~~f~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~G~~~~ivld 251 (474)
. . .+.|.||+. .+ .++ +|++++.+++.++++.+|+++.|+||
T Consensus 442 -------------------------~---~-~t~f~~Y~~-~~--~~a------~v~~i~~~~~~~~~~~~g~~~~vvLd 483 (865)
T PRK00252 442 -------------------------D---L-ATEFVGYDT-LE--AEA------KVLALFVDGESVDSAKAGEEVEVVLD 483 (865)
T ss_pred -------------------------c---C-CCeeeeeee-cc--ccE------EEEEEEeCCceeeeccCCCeEEEEEe
Confidence 0 0 123555544 33 456 99999988889999999999999999
Q ss_pred CCccccccCCeeeecceEEeeecceeEEEeeec-c-eeeee-------eecCCeEEEEEecccce---------------
Q psy16318 252 KSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYN-K-QFVDS-------VSSGTEAGILLDKSNFY--------------- 307 (474)
Q Consensus 252 ~TpFYAE~GGQv~D~G~i~~~~~kskVlav~k~-~-~~~~~-------v~~g~~~~l~vD~t~~y--------------- 307 (474)
+||||||+|||.+|+|+|.. .....|.++++. + .+.|. +..|++|.+.+|..+|+
T Consensus 484 ~T~FYpegGGQ~~D~G~I~~-~~~~~V~~v~~~~~g~i~H~~~~~~~~l~~G~~V~~~ID~~rR~~~m~~HTa~HLL~~a 562 (865)
T PRK00252 484 KTPFYAESGGQVGDTGVIED-GGVFEVTDTQKPPNGLIVHRGKVEEGELKVGDEVTAEVDEERRRAIARNHSATHLLHAA 562 (865)
T ss_pred CCCCCCCCCCCCCCEEEEee-CcEEEEEEEEEccCCEEEEEEEeccCCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 557789999875 4 45554 35799999999999998
Q ss_pred --eccCCCcCccceeecceeeeeeeccCCceEEecccccccCCCCccceeeee
Q psy16318 308 --AEQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 358 (474)
Q Consensus 308 --~~~Ggqv~d~Gsl~~~~~~~~v~~v~~~~lrfDfT~f~p~~ggq~~d~g~~ 358 (474)
...|.++.|.|+. +.++++||||+++.+++..++..+|..
T Consensus 563 l~~~lg~~v~q~Gs~-----------~~~~~~r~Df~~~~~lt~eel~~IE~~ 604 (865)
T PRK00252 563 LREVLGEHVTQAGSL-----------VAPDRLRFDFSHFEALTPEELRKIEDL 604 (865)
T ss_pred HHHHhhhheEeccCc-----------ccCCeEEEEeecCCCCCHHHHHHHHHH
Confidence 2238888889998 789999999999999999998888765
No 12
>KOG0188|consensus
Probab=99.96 E-value=7.3e-30 Score=274.16 Aligned_cols=213 Identities=38% Similarity=0.525 Sum_probs=162.6
Q ss_pred hhCCCCccCcceeeeeeccCCCcHHhHHHHHHHcCceecHHHHHHHHHHhhcCCCcccCCccceeEecceeecccccccc
Q psy16318 7 KLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQAGMETSVEFCGGTHLAMAHHVGD 86 (474)
Q Consensus 7 ~~~~~~~l~G~~aF~LydTyGfP~dlt~~ia~e~g~~vD~~~f~~~m~~q~~~~~sr~~~~~~~~f~g~thlal~~~lg~ 86 (474)
...++++|||+++|+||||||||+|||+.||+|+|+++|.++|+.+.++.+++ |+.+.+..
T Consensus 385 ~~~~s~tipGd~~w~LydTyGfPvdlt~lmAee~gl~iD~~~fE~ar~~A~~~--Sk~~~~~~----------------- 445 (895)
T KOG0188|consen 385 ELGSSKTIPGDVAWRLYDTYGFPVDLTELMAEEKGLKIDETGFEAARQEAQEK--SKGAGGGK----------------- 445 (895)
T ss_pred hcCCCCcCchHHHHHHHhhcCCcHHHHHHHHHHhCCccCchhHHHHHHHHHHH--HhccCCCC-----------------
Confidence 33456899999999999999999999999999999999999999999999998 77654320
Q ss_pred cccchhhhhhccceeeeccCCceeeecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCcccccc
Q psy16318 87 FCISSEEAIAKGSNIVSYCGSKGTFQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWT 166 (474)
Q Consensus 87 ~~~~~~~~~q~gs~v~~~~~~klrFfs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~~ 166 (474)
.+ +. ++.+.++
T Consensus 446 ----------~~--i~--------------------ldvl~el------------------------------------- 456 (895)
T KOG0188|consen 446 ----------LS--ID--------------------LDVLSEL------------------------------------- 456 (895)
T ss_pred ----------Cc--cc--------------------HHHHHhh-------------------------------------
Confidence 00 10 0001111
Q ss_pred ccccCCcccccccCCCCCCCchhhHHHHHhhhccccccceeeccCccCcccccCCCCceeEEEEeeCCeeeecccCCcee
Q psy16318 167 GVAIGALPFGLTVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEA 246 (474)
Q Consensus 167 ~~lsge~~F~L~~~dtyG~P~~l~~~~~~e~~~~v~~~~f~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~G~~~ 246 (474)
+|.|-- +--|..+.. ..+ +|++++.++.+++++.+|+++
T Consensus 457 ------------~p~TdD------------------s~KY~~~~~-----~~~------~il~l~~e~~~v~~~~~g~~~ 495 (895)
T KOG0188|consen 457 ------------VPPTDD------------------SFKYNEFGV-----CKT------RILALYREDQFVESIPKGQEC 495 (895)
T ss_pred ------------CCCCCC------------------ccccccCcc-----chh------hhhhhhcCCceeeecCCCceE
Confidence 122111 111322212 334 899999999999999999999
Q ss_pred eEeccCCccccccCCeeeecceEEeeecceeEEEeeec--ce-ee------eeeecCCeEEEEEecccceecc-------
Q psy16318 247 GILLDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYN--KQ-FV------DSVSSGTEAGILLDKSNFYAEQ------- 310 (474)
Q Consensus 247 ~ivld~TpFYAE~GGQv~D~G~i~~~~~kskVlav~k~--~~-~~------~~v~~g~~~~l~vD~t~~y~~~------- 310 (474)
.||||+|.||||+|||++|+|.|.-.+...-|..+..- +. .+ ..++.|+++.+.+|..+|...+
T Consensus 496 givldktnFYaEqGGQ~~D~G~lv~~~~~~~~fnV~~~~~gg~vvh~g~l~~~l~vgdqv~~~~De~rR~~im~nHTaTH 575 (895)
T KOG0188|consen 496 GIVLDKTNFYAEQGGQIYDTGKLVIDGDEDFVFNVKRVQVGGYVVHIGVLEGDLSVGDQVELHVDEERRQLIMRNHTATH 575 (895)
T ss_pred EEEeecceeehhcCCcccccceEEEecCccceeehhhcccCCEEEEEeeeccccccchhHHHHhhHHHHHHHhhcchHHH
Confidence 99999999999999999999999866655445555432 23 22 3778999999999999997433
Q ss_pred ---------CCCcCccceeecceeeeeeeccCCceEEecccccccCCCCccceeeeee
Q psy16318 311 ---------GGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMI 359 (474)
Q Consensus 311 ---------Ggqv~d~Gsl~~~~~~~~v~~v~~~~lrfDfT~f~p~~ggq~~d~g~~~ 359 (474)
..-..|.||+ |+|++||||||.-.+++.+|+.++|.+.
T Consensus 576 lLN~aLr~~l~~t~QkGSl-----------V~pdklRfDf~~k~~lt~eql~~vE~~~ 622 (895)
T KOG0188|consen 576 LLNFALRQVLKGTDQKGSL-----------VAPDKLRFDFSTKGALTKEQLKKVEDKI 622 (895)
T ss_pred HHHHHHHHhcccccccccc-----------cChhHeeeecccCCCCCHHHHHHHHHHH
Confidence 3446788999 9999999999999999999999999774
No 13
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=99.94 E-value=1.1e-28 Score=267.64 Aligned_cols=167 Identities=37% Similarity=0.527 Sum_probs=107.2
Q ss_pred CCCccCcceeeeeeccCCCcHHhHHHHHHHcCceecHHHHHHHHHHhhcCCCcccCCccceeEecceeeccccccccccc
Q psy16318 10 ESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQAGMETSVEFCGGTHLAMAHHVGDFCI 89 (474)
Q Consensus 10 ~~~~l~G~~aF~LydTyGfP~dlt~~ia~e~g~~vD~~~f~~~m~~q~~~~~sr~~~~~~~~f~g~thlal~~~lg~~~~ 89 (474)
+++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++ ||++++..
T Consensus 378 ~~~~lsge~aF~LYDTyGfP~Dlt~eia~e~gl~vD~~~f~~~m~~qr~~--sr~~~~~~-------------------- 435 (552)
T PF01411_consen 378 KKKELSGEDAFKLYDTYGFPLDLTEEIAEEKGLSVDEEGFEYAMEEQRER--SRAAKKKK-------------------- 435 (552)
T ss_dssp CCSEE-HHHHHHHHHHH---HHHHHHHHHTTT-EE-HHCCHHHHHHHCHH--HCCHH-----------------------
T ss_pred cccCCChHHheeehhccCCCHHHHHHHHHHhceeecHHHHHHHHHHHHHH--hhhccccc--------------------
Confidence 36789999999999999999999999999999999999999999999999 87765320
Q ss_pred chhhhhhccceeeeccCCceeeecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCccccccccc
Q psy16318 90 SSEEAIAKGSNIVSYCGSKGTFQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWTGVA 169 (474)
Q Consensus 90 ~~~~~~q~gs~v~~~~~~klrFfs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~~~~l 169 (474)
...... ...+.++.
T Consensus 436 ---------~~~~~~------------------~~~~~~l~--------------------------------------- 449 (552)
T PF01411_consen 436 ---------SSIEED------------------VSALAELP--------------------------------------- 449 (552)
T ss_dssp --------------S------------------SSTTTTCH---------------------------------------
T ss_pred ---------cchhhh------------------HHHHhhhh---------------------------------------
Confidence 000000 00000000
Q ss_pred cCCcccccccCCCCCCCchhhHHHHHhhhccccccceeeccCccCcccccCCCCceeEEEEeeCCeeeecccCCceeeEe
Q psy16318 170 IGALPFGLTVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGIL 249 (474)
Q Consensus 170 sge~~F~L~~~dtyG~P~~l~~~~~~e~~~~v~~~~f~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~G~~~~iv 249 (474)
. .+.|.||+. +. .++ +|++|+.++.++..+.+|+.+.||
T Consensus 450 -~-------------------------------~teF~gYe~-~~--~~a------kVlal~~~~~~~~~v~~~~~~~VV 488 (552)
T PF01411_consen 450 -K-------------------------------TTEFVGYEY-LE--CEA------KVLALFKDGEFVAKVEEGEEGYVV 488 (552)
T ss_dssp -H-------------------------------HEETCCCC---------------TT---TT--EEEEEEEEEETTEEE
T ss_pred -c-------------------------------ccccceeec-cc--ccc------eEEEEEeCCEEEeeecCCceEEEE
Confidence 0 023556655 34 566 899999999999898899999999
Q ss_pred ccCCccccccCCeeeecceEEeeecceeEEEeeecce-eee-------eeecCCeEEEEEeccc
Q psy16318 250 LDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNKQ-FVD-------SVSSGTEAGILLDKSN 305 (474)
Q Consensus 250 ld~TpFYAE~GGQv~D~G~i~~~~~kskVlav~k~~~-~~~-------~v~~g~~~~l~vD~t~ 305 (474)
||+||||||+|||++|+|+|...+....|.++++.+. ++| .+++|++|.+.+|..+
T Consensus 489 LD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~~~g~l~~G~~V~~~VD~eR 552 (552)
T PF01411_consen 489 LDKTPFYPEGGGQPGDTGTIIGDGGEFEVTDVQKVGGVILHIGEVESGSLKVGDEVTAEVDWER 552 (552)
T ss_dssp ESEE-S--SBTTB----EEECCTTEEEEEEEEEEETTEEEEEESSG-GG--TTSEEEEEE-HHH
T ss_pred ECCccccCCCCCCCCCeEEEeecceEEEEEEEEEECCEEEEEEeccCCCCCCCCEEEEEecCCC
Confidence 9999999999999999999998888899999988753 444 5678999999999653
No 14
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=99.94 E-value=1.1e-27 Score=270.97 Aligned_cols=192 Identities=19% Similarity=0.236 Sum_probs=147.1
Q ss_pred CCccCcceeeeeeccCCCcHHhHHHHHHHcCceecHH-HHHHHHHHhhcCCCcccCCccceeEecceeeccccccccccc
Q psy16318 11 SKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDME-VYEDAKKKAQSEPESQAGMETSVEFCGGTHLAMAHHVGDFCI 89 (474)
Q Consensus 11 ~~~l~G~~aF~LydTyGfP~dlt~~ia~e~g~~vD~~-~f~~~m~~q~~~~~sr~~~~~~~~f~g~thlal~~~lg~~~~ 89 (474)
++.|||++||+||||||||+|||++||+|+|++||++ +|+++|++|+++ ||+....
T Consensus 431 ~~~i~g~~~f~LyDTyGfP~dl~~eia~e~g~~vd~~~~F~~~~~~~~~~--~~~~~~~--------------------- 487 (902)
T TIGR03683 431 KKEIPLDDLIELYDSHGIPPEIVKEIAAELGAEVEIPDNFYSIVAERHEK--EEKEEEL--------------------- 487 (902)
T ss_pred CCcCCHHHHHHHHHccCCCHHHHHHHHHHcCCcccCCccHHHHHHHHHHH--HHhcccc---------------------
Confidence 3579999999999999999999999999999999998 999999999999 6553210
Q ss_pred chhhhhhccceeeeccCCceeeecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCccccccccc
Q psy16318 90 SSEEAIAKGSNIVSYCGSKGTFQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWTGVA 169 (474)
Q Consensus 90 ~~~~~~q~gs~v~~~~~~klrFfs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~~~~l 169 (474)
. ... +... . .+
T Consensus 488 ---------~--~~~----------------------~~~~---------------------------~---------~~ 498 (902)
T TIGR03683 488 ---------P--KDY----------------------EERA---------------------------K---------DL 498 (902)
T ss_pred ---------c--cch----------------------hHHH---------------------------h---------cC
Confidence 0 000 0000 0 00
Q ss_pred cCCcccccccCCCCCCCchhhHHHHHhhhccccccceeeccCc--cCcccccCCCCceeEEEEeeCCeeeecccCCceee
Q psy16318 170 IGALPFGLTVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTG--LGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAG 247 (474)
Q Consensus 170 sge~~F~L~~~dtyG~P~~l~~~~~~e~~~~v~~~~f~~~~~~--~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~G~~~~ 247 (474)
+.+. |.+|+.. .+ .++ +|+++.. ..
T Consensus 499 -~~T~-------------------------------~l~y~~~~~~e--~~a------~Vl~i~~-------------~~ 525 (902)
T TIGR03683 499 -PETR-------------------------------RLFYEDPTMRE--FEA------KVLGVFD-------------NY 525 (902)
T ss_pred -CCce-------------------------------EeccccCccce--EEE------EEEEEEc-------------CE
Confidence 0111 2222220 11 234 7777651 37
Q ss_pred EeccCCccccccCCeeeecceEEeeecceeEEEeeecc-eeeee-----eecCCeEEEEEecccce--------------
Q psy16318 248 ILLDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNK-QFVDS-----VSSGTEAGILLDKSNFY-------------- 307 (474)
Q Consensus 248 ivld~TpFYAE~GGQv~D~G~i~~~~~kskVlav~k~~-~~~~~-----v~~g~~~~l~vD~t~~y-------------- 307 (474)
|+||+||||||+|||.+|+|+|..++....|.++++.+ .++|. +..|++|.+.+|..+|+
T Consensus 526 vvLd~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~~ 605 (902)
T TIGR03683 526 VVLDQTAFYPEGGGQPADTGYLITNGGKIRVVDVQKVGGVIVHKVDGEGIKEGDEVKGEIDWERRLRLMRHHTATHVLLA 605 (902)
T ss_pred EEEeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998776678999998864 46664 45789999999999998
Q ss_pred ---eccCCCcCccceeecceeeeeeeccCCceEEecccccccCCCCccceeeee
Q psy16318 308 ---AEQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 358 (474)
Q Consensus 308 ---~~~Ggqv~d~Gsl~~~~~~~~v~~v~~~~lrfDfT~f~p~~ggq~~d~g~~ 358 (474)
.+.|.|+.|+|+. +.++++||||+|+.|++.+++..+|.+
T Consensus 606 alr~vlG~~v~q~Gs~-----------v~~d~~r~Df~~~~~lt~eel~~IE~~ 648 (902)
T TIGR03683 606 AARRVLGRHVWQAGAQ-----------KDTDKARLDITHYKRISEEEIKEIERL 648 (902)
T ss_pred HHHHHhCCceeecCcc-----------ccCCcEEEEEeCCCCCCHHHHHHHHHH
Confidence 3349999999998 789999999999999999999988876
No 15
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=99.94 E-value=2.2e-27 Score=268.63 Aligned_cols=191 Identities=20% Similarity=0.234 Sum_probs=146.1
Q ss_pred CccCcceeeeeeccCCCcHHhHHHHHHHcCceecH-HHHHHHHHHhhcCCCcccCCccceeEecceeecccccccccccc
Q psy16318 12 KVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDM-EVYEDAKKKAQSEPESQAGMETSVEFCGGTHLAMAHHVGDFCIS 90 (474)
Q Consensus 12 ~~l~G~~aF~LydTyGfP~dlt~~ia~e~g~~vD~-~~f~~~m~~q~~~~~sr~~~~~~~~f~g~thlal~~~lg~~~~~ 90 (474)
+.|||++||+||||||||+|||++||+|+|++||+ ++|+++|++|+++ |++.... .
T Consensus 428 ~~l~g~~~f~LYDt~G~P~dl~~eia~e~g~~vd~p~~F~~~~~~~~~~--~~~~~~~------------------~--- 484 (900)
T PRK13902 428 EEIPLDDLIELYDSHGIPPEIVKEIAKKKGVEVEVPDNFYSLVAERHEK--AEEEEEE------------------P--- 484 (900)
T ss_pred CCCCHHHHhhhhhcCCCCHHHHHHHHHHcCCccCchhhHHHHHHHHHHH--Hhhcccc------------------c---
Confidence 57999999999999999999999999999999999 9999999999999 6653110 0
Q ss_pred hhhhhhccceeeeccCCceeeecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCcccccccccc
Q psy16318 91 SEEAIAKGSNIVSYCGSKGTFQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWTGVAI 170 (474)
Q Consensus 91 ~~~~~q~gs~v~~~~~~klrFfs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~~~~ls 170 (474)
... . +.+. .+
T Consensus 485 -----------~~~------------------~---~~~~-------------------------------------~~- 494 (900)
T PRK13902 485 -----------VVE------------------E---ERLK-------------------------------------DL- 494 (900)
T ss_pred -----------cch------------------h---hHhh-------------------------------------cC-
Confidence 000 0 0000 00
Q ss_pred CCcccccccCCCCCCCchhhHHHHHhhhccccccceeeccC--ccCcccccCCCCceeEEEEeeCCeeeecccCCceeeE
Q psy16318 171 GALPFGLTVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDT--GLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGI 248 (474)
Q Consensus 171 ge~~F~L~~~dtyG~P~~l~~~~~~e~~~~v~~~~f~~~~~--~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~G~~~~i 248 (474)
+.+. |.+|+. ..+ .++ +|+++.. ..|
T Consensus 495 ~~T~-------------------------------~l~y~~~~~~~--~~a------~Vl~i~~-------------~~v 522 (900)
T PRK13902 495 PETE-------------------------------KLFYEDPYMRE--FEA------KVLGVID-------------NYV 522 (900)
T ss_pred CCce-------------------------------EeccccCccce--EEE------EEEEEEc-------------CEE
Confidence 0111 222212 011 234 7777651 389
Q ss_pred eccCCccccccCCeeeecceEEeeecceeEEEeeecc-eeeeeee-----cCCeEEEEEecccce---------------
Q psy16318 249 LLDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNK-QFVDSVS-----SGTEAGILLDKSNFY--------------- 307 (474)
Q Consensus 249 vld~TpFYAE~GGQv~D~G~i~~~~~kskVlav~k~~-~~~~~v~-----~g~~~~l~vD~t~~y--------------- 307 (474)
+||+||||||+|||.+|+|+|..++....|.++++.+ .++|.+. .|++|.+.+|..+|+
T Consensus 523 vLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~~~~~~G~~V~~~VD~~rR~~~mr~HTAtHLL~~a 602 (900)
T PRK13902 523 VLDQTAFYPEGGGQPADTGVLIVDGKGYKVVDVQKVGGVIVHVLEGEPPKKGDEVRGEIDWERRYRLMRHHTATHIILAA 602 (900)
T ss_pred EEeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998766678999998864 4666443 389999999999998
Q ss_pred --eccCCCcCccceeecceeeeeeeccCCceEEecccccccCCCCccceeeee
Q psy16318 308 --AEQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 358 (474)
Q Consensus 308 --~~~Ggqv~d~Gsl~~~~~~~~v~~v~~~~lrfDfT~f~p~~ggq~~d~g~~ 358 (474)
...|.|+.|+|+. +.++++||||+|+.+++.+++..+|.+
T Consensus 603 l~~vlG~~v~q~Gs~-----------v~~d~~r~Df~~~~~lt~eel~~IE~~ 644 (900)
T PRK13902 603 ARKVLGDHVWQAGAQ-----------KTVDKARLDITHYKRITREEVKEIERL 644 (900)
T ss_pred HHHHhCCceeecCcc-----------ccCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 3349999999998 789999999999999999999988876
No 16
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=99.92 E-value=1.7e-27 Score=258.24 Aligned_cols=227 Identities=25% Similarity=0.343 Sum_probs=147.3
Q ss_pred CCceee-ecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCccccc--------cccccCCcccc
Q psy16318 106 GSKGTF-QSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGW--------TGVAIGALPFG 176 (474)
Q Consensus 106 ~~klrF-fs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~--------~~~lsge~~F~ 176 (474)
|.+.-| .++++.+.+.+...||+|. .++..|.++|+.||..|.+||++|++.|+ .+.|||+.+|+
T Consensus 316 g~~~~fl~~lv~~vi~~~~~~ypel~------~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~~~lsge~aF~ 389 (552)
T PF01411_consen 316 GIEEPFLYELVPVVIESMGDFYPELK------ENKDYIKDIIKEEEERFLKTLERGLKLLEKLIKKLKKKKELSGEDAFK 389 (552)
T ss_dssp T-SS--HHHHHHHHHHHHTTTGTHHH------HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEE-HHHHHH
T ss_pred CCCccchHHHHHHHHHHhhccChhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCChHHhee
Confidence 334445 8999999999999999998 78899999999999999999999999886 25799999999
Q ss_pred cccCCCCCCCchhhHHHHHhhhccccccceeeccCccCcccccCCCCceeEEEEeeCCeeeecccCCceeeEeccCCccc
Q psy16318 177 LTVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGILLDKSNFY 256 (474)
Q Consensus 177 L~~~dtyG~P~~l~~~~~~e~~~~v~~~~f~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~G~~~~ivld~TpFY 256 (474)
|| ||||||+||+.++|+++|++||..+|+ +.|. .|+ +++................+ .-+-.+|.|
T Consensus 390 LY--DTyGfP~Dlt~eia~e~gl~vD~~~f~---~~m~--~qr-~~sr~~~~~~~~~~~~~~~~------~~l~~~teF- 454 (552)
T PF01411_consen 390 LY--DTYGFPLDLTEEIAEEKGLSVDEEGFE---YAME--EQR-ERSRAAKKKKSSIEEDVSAL------AELPKTTEF- 454 (552)
T ss_dssp HH--HHH---HHHHHHHHHTTT-EE-HHCCH---HHHH--HHC-HHHCCHH--------SSSTT------TTCHHHEET-
T ss_pred eh--hccCCCHHHHHHHHHHhceeecHHHHH---HHHH--HHH-HHhhhccccccchhhhHHHH------hhhhccccc-
Confidence 99 999999999999999999999999888 3454 332 21100000000000000000 000111222
Q ss_pred cccCCeeeecceEEeeecceeEEEeeecceeeeeeecCCeEEEEEecccceeccCCCcCccceeecceeeeeeeccCCce
Q psy16318 257 AEQGGQIYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEAG 336 (474)
Q Consensus 257 AE~GGQv~D~G~i~~~~~kskVlav~k~~~~~~~v~~g~~~~l~vD~t~~y~~~Ggqv~d~Gsl~~~~~~~~v~~v~~~~ 336 (474)
.||=. ....++|+++.+++.+...+..++...+++|+|+|||++|||++|+|.|..
T Consensus 455 ---------~gYe~-~~~~akVlal~~~~~~~~~v~~~~~~~VVLD~T~FYpegGGQ~~D~G~I~~-------------- 510 (552)
T PF01411_consen 455 ---------VGYEY-LECEAKVLALFKDGEFVAKVEEGEEGYVVLDKTPFYPEGGGQPGDTGTIIG-------------- 510 (552)
T ss_dssp ---------CCCC-------TT---TT--EEEEEEEEEETTEEEESEE-S--SBTTB----EEECC--------------
T ss_pred ---------ceeec-ccccceEEEEEeCCEEEeeecCCceEEEEECCccccCCCCCCCCCeEEEee--------------
Confidence 22222 245778888888777888888888899999999999999999999998833
Q ss_pred EEecccccccCCCCccceeeeeeecCCcchhhhhhhhcccccCCCCCCCceeeEEEEeEEEeCCEEEEEEee-ccccCCC
Q psy16318 337 ILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTL-SHTLRVG 415 (474)
Q Consensus 337 lrfDfT~f~p~~ggq~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~k~~~~ivH~~~~-~~~l~vG 415 (474)
++ ..+.|.+|++.++.++|.+.. .+.+.+|
T Consensus 511 --------------------------~~-----------------------~~~~V~dv~k~~g~i~H~~~~~~g~l~~G 541 (552)
T PF01411_consen 511 --------------------------DG-----------------------GEFEVTDVQKVGGVILHIGEVESGSLKVG 541 (552)
T ss_dssp --------------------------TT-----------------------EEEEEEEEEEETTEEEEEESSG-GG--TT
T ss_pred --------------------------cc-----------------------eEEEEEEEEEECCEEEEEEeccCCCCCCC
Confidence 11 468999999999999999987 4889999
Q ss_pred CEEEEEEcHHh
Q psy16318 416 DKLKLHIDTAR 426 (474)
Q Consensus 416 d~V~~~ID~~r 426 (474)
+.|.++|||+|
T Consensus 542 ~~V~~~VD~eR 552 (552)
T PF01411_consen 542 DEVTAEVDWER 552 (552)
T ss_dssp SEEEEEE-HHH
T ss_pred CEEEEEecCCC
Confidence 99999999997
No 17
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=99.89 E-value=4.5e-23 Score=202.05 Aligned_cols=122 Identities=30% Similarity=0.365 Sum_probs=112.1
Q ss_pred ceeeeeeeccCCceEEecccccccCCCCccceeeeeeecCCcchhhhhhhhcccccCCCCCCCceeeEEEEeEEEeCCEE
Q psy16318 323 KQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLV 402 (474)
Q Consensus 323 ~~~~~~v~~v~~~~lrfDfT~f~p~~ggq~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~k~~~~i 402 (474)
+.|.++|.+|.++.+.||.|+|||.+||||.|.|+++..+ ....+.++.+.+..|
T Consensus 13 ~e~~~~v~~v~~~~i~ld~T~Fyp~~GGQp~D~G~l~~~~-------------------------~~~~~~~~~~~~~~I 67 (241)
T COG2872 13 KEFEATVVDVEDNEIVLDRTIFYPTGGGQPGDTGTLIWAG-------------------------GEYVVEDVTKDGEEI 67 (241)
T ss_pred ccceEEEEEEeCCeEEEEeccccCCCCCCcCCceEEEeCC-------------------------ceEEEEEEEecceEE
Confidence 5788999999999999999999999999999999999764 246788888888899
Q ss_pred EEEEeeccccCCCCEEEEEEcHHhHHHHHHhhHHHHHHHHHHHHHcCCCceeeccccCCCeEEEEcccc
Q psy16318 403 KLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIMEC 471 (474)
Q Consensus 403 vH~~~~~~~l~vGd~V~~~ID~~rR~~imrnHTAtHLL~~ALr~vlg~~v~q~Gs~v~~~~lr~d~~~~ 471 (474)
+|++.....+.+|++|.+.|||+||+.+||+|||+|||+++++++++ ++..|.+++++++|+||..-
T Consensus 68 ~H~~~~~~~~~vG~~V~~~IDW~rRy~~mr~HTa~Hlls~~~~~~~~--~~~~g~~i~~d~~~iD~~~e 134 (241)
T COG2872 68 VHVLAEHAKLKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYG--ALTTGFEIGEDYARIDFDGE 134 (241)
T ss_pred EEEecCcccCCCCCEEEEEECcHHHHHHHhhhHHHHHHHHHhhcccc--ceeecceecccccccccccc
Confidence 99987557789999999999999999999999999999999999999 99999999999999999753
No 18
>PLN02961 alanine-tRNA ligase
Probab=99.88 E-value=3.4e-22 Score=194.36 Aligned_cols=111 Identities=24% Similarity=0.397 Sum_probs=92.0
Q ss_pred CceEEecccccccCCCCccceeeeeeecCCcchhhhhhhhcccccCCCCCCCceeeEEEEeEEEeCCEEEEEEeec----
Q psy16318 334 EAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTLS---- 409 (474)
Q Consensus 334 ~~~lrfDfT~f~p~~ggq~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~k~~~~ivH~~~~~---- 409 (474)
+..|.||.|+|||.+||||+|.|++...++. ..|.|.+|++.++.++|.+...
T Consensus 2 ~~~viLd~T~FYpegGGQp~D~G~i~~~~~~-----------------------~~~~V~~v~~~~g~i~H~~~~~~~~~ 58 (223)
T PLN02961 2 RIALVLDRTIFHPQGGGQPSDTGRIVISGGD-----------------------TKFSVQDVRRKDGVVYHYGVFEGSNP 58 (223)
T ss_pred CeEEEeCCceEcCCCCCCCCcEEEEEecCCC-----------------------cEEEEEEEEEECCEEEEEEEecCccc
Confidence 3467888888888888888888888754321 3578999999999999997542
Q ss_pred ---cccCCCCEEEEEEcHHhHHHHHHhhHHHHHHHHHHHHH-cCCCceeeccccCCCeEEEEc
Q psy16318 410 ---HTLRVGDKLKLHIDTARRRPIMSNHTATHILNHALRFV-LGPEADQKGSLVYRYHLHENI 468 (474)
Q Consensus 410 ---~~l~vGd~V~~~ID~~rR~~imrnHTAtHLL~~ALr~v-lg~~v~q~Gs~v~~~~lr~d~ 468 (474)
..|.+|+.|.++|||+||+.+|++|||+|||++||+++ +|.++.|+|+++. +..++||
T Consensus 59 ~~~~~l~~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~~~~~~~~~~g~~~~-~~~~v~~ 120 (223)
T PLN02961 59 ESASPFEAGDEVTVTVDESRRKLHSRLHSAGHLLDVCMARVGLGPLEPGKGYHFP-DGPFVEY 120 (223)
T ss_pred ccCCCCCCCCEEEEEECHHHHhhhhccCcHHHHHHHHHHHcCCCccccccccccC-Cccceee
Confidence 36899999999999999999999999999999999998 8888889998864 4566665
No 19
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=99.87 E-value=3.3e-23 Score=224.79 Aligned_cols=132 Identities=36% Similarity=0.591 Sum_probs=120.7
Q ss_pred CCccCcceeeeeeccCCCcHHhHHHHHHHcCceecHHHHHHHHHHhhcCCCcccCCccceeEecc--------------e
Q psy16318 11 SKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQAGMETSVEFCGG--------------T 76 (474)
Q Consensus 11 ~~~l~G~~aF~LydTyGfP~dlt~~ia~e~g~~vD~~~f~~~m~~q~~~~~sr~~~~~~~~f~g~--------------t 76 (474)
++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++ ||++.. -+|.|+ |
T Consensus 385 ~~~~~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~--~~~~~~--~~f~g~~~d~g~~~~r~HTAt 460 (594)
T PRK01584 385 SKIIPGDIAFKLYDTYGFPYEITEELASEYGFTVDREGFDEHFKKHQKV--SKKGAD--KVFKGGLADHSYETTKLHTAT 460 (594)
T ss_pred CCccCHHHHHhhhccCCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHH--Hhhccc--ccccCCcCcccccHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999 776532 267654 9
Q ss_pred ee---cccccccccccchhhhhhccceeeeccCCceee-ecCCCCCChhhhhcccccchhhhccchhhhhcccccccccC
Q psy16318 77 HL---AMAHHVGDFCISSEEAIAKGSNIVSYCGSKGTF-QSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLS 152 (474)
Q Consensus 77 hl---al~~~lg~~~~~~~~~~q~gs~v~~~~~~klrF-fs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~ 152 (474)
|| ||++++|.| +.|+||.+.++ ++|| |+|..+++++++..+|+.+ |+.+.-+.++..+++.
T Consensus 461 HLL~~ALr~vlG~~------v~q~Gs~v~~d---~~r~DF~~~~~it~edL~~IE~~v------NeiI~~n~pV~~~~~s 525 (594)
T PRK01584 461 HLLHKALRLVLGDH------VRQKGSNITAE---RLRFDFSHPEKMTDDEIKKVEDIV------NLQIKNDLSVKKEVMS 525 (594)
T ss_pred HHHHHHHHHHcCcc------ceeecCCcCCC---cEEEEEeCCCCCCHHHHHHHHHHH------HHHHHhCCCeEEEEcC
Confidence 99 999999999 99999999888 9999 9999999999999999999 8999999999999999
Q ss_pred HHHHHhcCc
Q psy16318 153 FRGVWEHGM 161 (474)
Q Consensus 153 F~ktl~~G~ 161 (474)
..++.+.|.
T Consensus 526 ~eEA~~~~~ 534 (594)
T PRK01584 526 LEEAREKGA 534 (594)
T ss_pred HHHHHhcch
Confidence 999988653
No 20
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=99.84 E-value=1.2e-22 Score=220.40 Aligned_cols=95 Identities=22% Similarity=0.299 Sum_probs=86.8
Q ss_pred cCCceee-ecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCccccc--------cccccCCccc
Q psy16318 105 CGSKGTF-QSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGW--------TGVAIGALPF 175 (474)
Q Consensus 105 ~~~klrF-fs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~--------~~~lsge~~F 175 (474)
.|.+.-| +.+++.+.+.+...||+|. .++..|..+|+.||..|.+||++|++.|+ .+.+||+.+|
T Consensus 321 lg~~~~fl~~lv~~v~~~~~~~ypel~------~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~~i~~~~~~~~~~g~~af 394 (594)
T PRK01584 321 LGIESHFLADLVDSVEEIYGSFYPELT------EKKDFIKEELNKEEEKFFKTLRKGEQEFIKLIPNLGSSKIIPGDIAF 394 (594)
T ss_pred hCCCchhHHHHHHHHHHHHhhhChHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCHHHHH
Confidence 3445555 9999999999999999998 78899999999999999999999999886 2359999999
Q ss_pred ccccCCCCCCCchhhHHHHHhhhcccccccee
Q psy16318 176 GLTVPLTFGPSLGLVFLAVAEFLFLVSSCGFI 207 (474)
Q Consensus 176 ~L~~~dtyG~P~~l~~~~~~e~~~~v~~~~f~ 207 (474)
+|| ||||||+||+.++|+++|++||..+|+
T Consensus 395 ~Ly--dTyGfP~dlt~~~a~e~g~~vd~~~f~ 424 (594)
T PRK01584 395 KLY--DTYGFPYEITEELASEYGFTVDREGFD 424 (594)
T ss_pred hhh--ccCCCCHHHHHHHHHHcCCeecHHHHH
Confidence 999 999999999999999999999999888
No 21
>KOG2105|consensus
Probab=98.82 E-value=4.7e-09 Score=104.82 Aligned_cols=97 Identities=20% Similarity=0.298 Sum_probs=75.5
Q ss_pred CCceEEecccccccCCCCccceeeeeeecCCcchhhhhhhhcccccCCCCCCCceeeEEEEeEEEeCCEEEEEEeecccc
Q psy16318 333 TEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTL 412 (474)
Q Consensus 333 ~~~~lrfDfT~f~p~~ggq~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~k~~~~ivH~~~~~~~l 412 (474)
+...+.+..|+.+|.+||||+|.|.+.+. .|..|.+.|...-|... ..+
T Consensus 42 eg~~i~lqdtiLfpegggqp~d~gf~~~v-----------------------------~V~~VsR~G~~A~H~~~--~~i 90 (415)
T KOG2105|consen 42 EGYEIELQDTILFPEGGGQPSDSGFLKIV-----------------------------EVSHVSRFGLHAKHHVN--DYI 90 (415)
T ss_pred ecceeeeeeeEeccCCCCCCCccccccce-----------------------------eEEEeeccccchhhccC--CCC
Confidence 34456777888888888888888888652 36666666654456543 578
Q ss_pred CCCCEEEEEEcHHhHHHHHHhhHHHHHHHHHHHHHcCC--CceeeccccC
Q psy16318 413 RVGDKLKLHIDTARRRPIMSNHTATHILNHALRFVLGP--EADQKGSLVY 460 (474)
Q Consensus 413 ~vGd~V~~~ID~~rR~~imrnHTAtHLL~~ALr~vlg~--~v~q~Gs~v~ 460 (474)
.+|.+|.+.|||+||..+|+.||++|||.+++...|.. .-|-.|-..+
T Consensus 91 ePGt~V~V~VD~qkR~D~MQQHsGQHLitAvad~~fKlkTtSWelG~~~s 140 (415)
T KOG2105|consen 91 EPGTTVEVAVDEQKRMDYMQQHSGQHLITAVADHLFKLKTTSWELGRFRS 140 (415)
T ss_pred CCCCeEEEEecHHHHhHHHHHhcchhHHHHHHHhhhccceeeeeccceee
Confidence 99999999999999999999999999999999999872 2466665544
No 22
>PLN02961 alanine-tRNA ligase
Probab=98.60 E-value=4e-08 Score=95.93 Aligned_cols=62 Identities=23% Similarity=0.318 Sum_probs=50.4
Q ss_pred eeEeccCCccccccCCeeeecceEEeee--cceeEEEeeecc-eeeee-------------eecCCeEEEEEecccce
Q psy16318 246 AGILLDKSNFYAEQGGQIYDEGFMIGVN--DEGTVVGLRYNK-QFVDS-------------VSSGTEAGILLDKSNFY 307 (474)
Q Consensus 246 ~~ivld~TpFYAE~GGQv~D~G~i~~~~--~kskVlav~k~~-~~~~~-------------v~~g~~~~l~vD~t~~y 307 (474)
+.|+||+||||||+|||.+|+|+|...+ ....|.++++.+ .+.|. +..|+++.+.+|..+|+
T Consensus 3 ~~viLd~T~FYpegGGQp~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~~rR~ 80 (223)
T PLN02961 3 IALVLDRTIFHPQGGGQPSDTGRIVISGGDTKFSVQDVRRKDGVVYHYGVFEGSNPESASPFEAGDEVTVTVDESRRK 80 (223)
T ss_pred eEEEeCCceEcCCCCCCCCcEEEEEecCCCcEEEEEEEEEECCEEEEEEEecCcccccCCCCCCCCEEEEEECHHHHh
Confidence 5799999999999999999999998643 246778876654 45553 45689999999999998
No 23
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=98.20 E-value=1.4e-06 Score=86.12 Aligned_cols=99 Identities=19% Similarity=0.164 Sum_probs=68.7
Q ss_pred eEeccCCccccccCCeeeecceEEeeecceeEEEeeecce-eee------eeecCCeEEEEEecccceeccCCCcCcc--
Q psy16318 247 GILLDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNKQ-FVD------SVSSGTEAGILLDKSNFYAEQGGQIYDE-- 317 (474)
Q Consensus 247 ~ivld~TpFYAE~GGQv~D~G~i~~~~~kskVlav~k~~~-~~~------~v~~g~~~~l~vD~t~~y~~~Ggqv~d~-- 317 (474)
.|+||+|+||+++|||-+|+|+|...+..-.+.++.+.+. +.| ...+|+++.+.+|-.+||.-+..|-.+.
T Consensus 26 ~i~ld~T~Fyp~~GGQp~D~G~l~~~~~~~~~~~~~~~~~~I~H~~~~~~~~~vG~~V~~~IDW~rRy~~mr~HTa~Hll 105 (241)
T COG2872 26 EIVLDRTIFYPTGGGQPGDTGTLIWAGGEYVVEDVTKDGEEIVHVLAEHAKLKVGDKVKLKIDWERRYRHMRMHTALHLL 105 (241)
T ss_pred eEEEEeccccCCCCCCcCCceEEEeCCceEEEEEEEecceEEEEEecCcccCCCCCEEEEEECcHHHHHHHhhhHHHHHH
Confidence 8999999999999999999999998888777877776654 544 2467999999999999995443222210
Q ss_pred -cee-ecceeeeeeeccCCceEEecccccc
Q psy16318 318 -GFM-SNKQFVDSVSSGTEAGILLDKSNFY 345 (474)
Q Consensus 318 -Gsl-~~~~~~~~v~~v~~~~lrfDfT~f~ 345 (474)
+-+ ..-.++.+--.+.+++-|+||..-.
T Consensus 106 s~~~~~~~~~~~~g~~i~~d~~~iD~~~e~ 135 (241)
T COG2872 106 SAVLYKVYGALTTGFEIGEDYARIDFDGED 135 (241)
T ss_pred HHHhhccccceeecceeccccccccccccc
Confidence 000 0001222334466777777777654
No 24
>PLN02837 threonine-tRNA ligase
Probab=95.58 E-value=0.022 Score=63.77 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=46.8
Q ss_pred CEEEEEEcHHhHHHHHHhhHHHHHHHHHHHHHcCCCceeeccccCCCeEEEEccc
Q psy16318 416 DKLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIME 470 (474)
Q Consensus 416 d~V~~~ID~~rR~~imrnHTAtHLL~~ALr~vlg~~v~q~Gs~v~~~~lr~d~~~ 470 (474)
..|.+..|...|...+.+|||+|||++|++++++....+.|..+. +.+++||..
T Consensus 30 ~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~~-~g~y~D~~~ 83 (614)
T PLN02837 30 ERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWIE-NGFYYDFDM 83 (614)
T ss_pred ceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCccC-CCEEEEecC
Confidence 579999999999999999999999999999999866567777765 679999864
No 25
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=93.08 E-value=0.2 Score=56.01 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=49.4
Q ss_pred ccccCCCCEEEEEEcHHhHHHHHHhhHHHHHHHHHHHHHcCCCceeeccccCCCeEEEEccc
Q psy16318 409 SHTLRVGDKLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIME 470 (474)
Q Consensus 409 ~~~l~vGd~V~~~ID~~rR~~imrnHTAtHLL~~ALr~vlg~~v~q~Gs~v~~~~lr~d~~~ 470 (474)
...+..+..|...-....+-..+.+|||+|||.+|++++++ .+...+++..++.+++||..
T Consensus 48 ~~~l~~d~~Vefi~~~~~~g~~~y~hS~~hll~~A~~~~~~-~~~~~~~~~~~~g~y~d~~~ 108 (638)
T PRK00413 48 STPIEEDASLEIITAKDEEGLEIIRHSAAHLLAQAVKRLYP-DAKLTIGPVIENGFYYDFDR 108 (638)
T ss_pred CccccCCCceeeeeccchhhHHHHhhhHHHHHHHHHHHHcC-CceEEECCccCCeEEEEEeC
Confidence 34566677888877777788888999999999999999997 45567677778989998863
No 26
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=85.02 E-value=0.35 Score=35.57 Aligned_cols=30 Identities=40% Similarity=0.774 Sum_probs=18.9
Q ss_pred ceeEecceeecccccccccccchhhhhhcc
Q psy16318 69 SVEFCGGTHLAMAHHVGDFCISSEEAIAKG 98 (474)
Q Consensus 69 ~~~f~g~thlal~~~lg~~~~~~~~~~q~g 98 (474)
.+.+|||||+.....+|.++|.+.+-..+|
T Consensus 10 ~~~~C~GtHv~~T~~i~~~~i~~~~~~~~~ 39 (44)
T PF07973_consen 10 DVDLCGGTHVPNTGEIGHFKILKGESKGKG 39 (44)
T ss_dssp EEEEESS---SBGGGG-CEEEEEEEEEETT
T ss_pred eEECCCCcccCChhEECcEEEEEeEEEcCC
Confidence 467899999999999999987744444443
No 27
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=79.25 E-value=2.2 Score=48.08 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=30.5
Q ss_pred HHHhhHHHHHHHHHHHHHcCCCceeeccccCCCeEEEEccc
Q psy16318 430 IMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIME 470 (474)
Q Consensus 430 imrnHTAtHLL~~ALr~vlg~~v~q~Gs~v~~~~lr~d~~~ 470 (474)
-.-.|||+|||.+|+++++|......|.. .++.++.||..
T Consensus 73 ~iy~hS~~hlL~~A~~~~~~~~~~~i~~~-~~~g~y~d~~~ 112 (639)
T PRK12444 73 EIARHSAAHILAQAVKRLYGDVNLGVGPV-IENGFYYDMDL 112 (639)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEeCCc-CCCeEEEEEeC
Confidence 45689999999999999998543344444 48889988763
No 28
>KOG2105|consensus
Probab=54.54 E-value=7.6 Score=40.06 Aligned_cols=60 Identities=25% Similarity=0.314 Sum_probs=45.5
Q ss_pred eeeEeccCCccccccCCeeeecceEEeeecceeEEEeeecce----e-eeeeecCCeEEEEEeccccee
Q psy16318 245 EAGILLDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNKQ----F-VDSVSSGTEAGILLDKSNFYA 308 (474)
Q Consensus 245 ~~~ivld~TpFYAE~GGQv~D~G~i~~~~~kskVlav~k~~~----~-~~~v~~g~~~~l~vD~t~~y~ 308 (474)
-..+.+..|-.++|+|||-.|.|++.... |..+.+-+. + ..-+.+|.+|.+.||-.+|+.
T Consensus 43 g~~i~lqdtiLfpegggqp~d~gf~~~v~----V~~VsR~G~~A~H~~~~~iePGt~V~V~VD~qkR~D 107 (415)
T KOG2105|consen 43 GYEIELQDTILFPEGGGQPSDSGFLKIVE----VSHVSRFGLHAKHHVNDYIEPGTTVEVAVDEQKRMD 107 (415)
T ss_pred cceeeeeeeEeccCCCCCCCcccccccee----EEEeeccccchhhccCCCCCCCCeEEEEecHHHHhH
Confidence 35678889999999999999999987432 444444332 2 236778999999999999973
No 29
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=54.24 E-value=3.9 Score=29.42 Aligned_cols=29 Identities=41% Similarity=0.670 Sum_probs=21.9
Q ss_pred eeEecceeecccccccccccchhhhhhcc
Q psy16318 70 VEFCGGTHLAMAHHVGDFCISSEEAIAKG 98 (474)
Q Consensus 70 ~~f~g~thlal~~~lg~~~~~~~~~~q~g 98 (474)
+..|||||+.....+|..+|.+.+...++
T Consensus 11 ~~~C~GtHv~~t~~I~~i~i~~~~~~~~~ 39 (44)
T smart00863 11 VELCGGTHVPNTGEIGAFKILSVSGAYWG 39 (44)
T ss_pred EECCCCcccCChhhCcEEEEEEEeeeecC
Confidence 45699999987777899987776655443
No 30
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=30.16 E-value=21 Score=39.42 Aligned_cols=67 Identities=16% Similarity=0.117 Sum_probs=50.3
Q ss_pred eee---cccccccccccchhhhhhccceeeeccCCceee-ecCCCCCChhhhhcccccchhhhccchhhhhccccccccc
Q psy16318 76 THL---AMAHHVGDFCISSEEAIAKGSNIVSYCGSKGTF-QSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCL 151 (474)
Q Consensus 76 thl---al~~~lg~~~~~~~~~~q~gs~v~~~~~~klrF-fs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~ 151 (474)
||| |++++.++. ..+.|+.+ +. .+++ |+...+++++++..+++.+ +..+.-+.+++..++
T Consensus 5 ~hLl~~Al~~~~~~~------~~~~~~~i-~~---g~~~df~~~~~~t~eel~~Ie~~m------~~lI~~~~pi~~~~~ 68 (563)
T TIGR00418 5 AHLLAEALKQLYPDV------KLAIGPVV-ED---GFYYDFELDRSFTQEDLEKIEKDM------KEIAKKNYPVAKLSV 68 (563)
T ss_pred HHHHHHHHHHHcCCc------EEEEcCCc-CC---CceecccCCCCCCHHHHHHHHHHH------HHHHhcCCCEEEEEE
Confidence 576 777877765 34444433 23 5778 8988999999999999998 777888888888888
Q ss_pred CHHHHHh
Q psy16318 152 SFRGVWE 158 (474)
Q Consensus 152 ~F~ktl~ 158 (474)
.-.++++
T Consensus 69 ~~eeA~~ 75 (563)
T TIGR00418 69 SLEEALE 75 (563)
T ss_pred CHHHHHH
Confidence 8666655
No 31
>PLN02908 threonyl-tRNA synthetase
Probab=25.10 E-value=2.5e+02 Score=32.26 Aligned_cols=42 Identities=21% Similarity=0.154 Sum_probs=29.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCceeeccccCC-CeEEEEcc
Q psy16318 427 RRPIMSNHTATHILNHALRFVLGPEADQKGSLVYR-YHLHENIM 469 (474)
Q Consensus 427 R~~imrnHTAtHLL~~ALr~vlg~~v~q~Gs~v~~-~~lr~d~~ 469 (474)
--.-+..||+.|||..|+++++|.+ ...|..+.+ +-+..||.
T Consensus 117 eg~~~y~hS~ahlL~~A~~~~~~~~-l~ig~~i~~~~Gfy~d~~ 159 (686)
T PLN02908 117 EGRDTFWHSSAHILGEALELEYGCK-LCIGPCTTRGEGFYYDAF 159 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCe-EEecCccccCCcEEEEee
Confidence 3345679999999999999999733 345555554 44466643
Done!