Query psy16318
Match_columns 474
No_of_seqs 400 out of 2643
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 18:18:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zze_A Alanyl-tRNA synthetase; 100.0 1.8E-39 6E-44 357.7 6.4 252 111-470 387-649 (752)
2 2ztg_A Alanyl-tRNA synthetase; 100.0 2.8E-37 9.5E-42 340.1 6.7 242 111-470 386-636 (739)
3 2zze_A Alanyl-tRNA synthetase; 100.0 9.5E-31 3.2E-35 288.4 2.7 194 10-359 445-665 (752)
4 2ztg_A Alanyl-tRNA synthetase; 100.0 8.8E-30 3E-34 280.6 3.8 186 14-358 440-651 (739)
5 2e1b_A PH0108, 216AA long hypo 99.9 1.6E-25 5.3E-30 215.4 12.3 119 323-470 16-136 (216)
6 3kew_A DHHA1 domain protein; s 99.9 8.3E-25 2.8E-29 213.7 12.7 114 323-469 14-131 (241)
7 1yfs_A Alanyl-tRNA synthetase; 99.6 6E-17 2.1E-21 169.1 2.5 55 10-66 375-429 (465)
8 3hy0_A Alanyl-tRNA synthetase; 99.5 8.2E-16 2.8E-20 159.7 0.3 52 12-65 387-438 (441)
9 3hy0_A Alanyl-tRNA synthetase; 99.3 1.6E-14 5.4E-19 150.1 -8.4 96 108-214 327-429 (441)
10 1yfs_A Alanyl-tRNA synthetase; 99.3 2.5E-14 8.6E-19 149.5 -7.2 98 106-214 311-419 (465)
11 2e1b_A PH0108, 216AA long hypo 99.3 4.1E-13 1.4E-17 128.9 1.7 97 247-359 29-151 (216)
12 3kew_A DHHA1 domain protein; s 99.3 9E-13 3.1E-17 128.6 2.7 96 244-358 28-145 (241)
13 1tke_A Threonyl-tRNA synthetas 97.5 0.00021 7.2E-09 68.2 8.1 68 397-469 39-107 (224)
14 1nyr_A Threonyl-tRNA synthetas 97.3 0.00022 7.7E-09 78.0 6.0 69 397-469 41-109 (645)
15 1qf6_A THRRS, threonyl-tRNA sy 96.7 0.0021 7E-08 70.5 7.2 69 397-470 39-108 (642)
16 1v4p_A Alanyl-tRNA synthetase; 94.4 0.0094 3.2E-07 53.4 0.8 70 75-158 11-84 (157)
17 1nyr_A Threonyl-tRNA synthetas 91.0 0.05 1.7E-06 59.5 0.5 66 76-157 78-147 (645)
18 1tke_A Threonyl-tRNA synthetas 79.3 0.58 2E-05 44.2 1.2 67 76-159 76-147 (224)
19 1qf6_A THRRS, threonyl-tRNA sy 75.5 0.81 2.8E-05 50.0 1.2 68 76-159 76-147 (642)
20 1v4p_A Alanyl-tRNA synthetase; 36.3 12 0.00041 32.8 1.3 24 69-92 112-135 (157)
21 1eh2_A EPS15; calcium binding, 26.2 36 0.0012 28.0 2.6 50 10-59 27-80 (106)
22 1qjt_A EH1, epidermal growth f 25.4 33 0.0011 27.6 2.1 49 9-57 23-75 (99)
23 2zc2_A DNAD-like replication p 22.7 31 0.001 26.7 1.4 22 19-40 26-47 (78)
No 1
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=1.8e-39 Score=357.67 Aligned_cols=252 Identities=18% Similarity=0.190 Sum_probs=197.1
Q ss_pred eecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCccccc-----c-----ccccCCcccccccC
Q psy16318 111 FQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGW-----T-----GVAIGALPFGLTVP 180 (474)
Q Consensus 111 Ffs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~-----~-----~~lsge~~F~L~~~ 180 (474)
|+.+++.+.+.+...||+|. .++..|..+|+.||..|.+||++|+++|+ . +.|+|+.+|+||
T Consensus 387 l~~lv~~~~~~m~~~ypel~------~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~~~~~~l~g~~af~Ly-- 458 (752)
T 2zze_A 387 LSEIVALHIXELHKTFPEFX------EMEDIILEMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFY-- 458 (752)
T ss_dssp HHHHHHHHHHHHTTTCTHHH------HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHH--
T ss_pred hhHHHHHHHHHhhhhchhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCHHHHHHHH--
Confidence 78899999999999999998 88899999999999999999999999886 1 349999999999
Q ss_pred CCCCCCchhhHHHHHhhhcccccc-ceeeccCccCcccccCCCCceeEEEEeeCCeeeecccCCceeeEeccCCcccccc
Q psy16318 181 LTFGPSLGLVFLAVAEFLFLVSSC-GFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGILLDKSNFYAEQ 259 (474)
Q Consensus 181 dtyG~P~~l~~~~~~e~~~~v~~~-~f~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~G~~~~ivld~TpFYAE~ 259 (474)
||||||+||+.++|+|+|++||.. +|+ ++|+ .|... ...+ .. . .+..-.... -+..|.|..
T Consensus 459 DTyGfP~dlt~~ia~e~g~~vd~~~~F~---~~m~--~q~~~----~r~~----~~-~-~~~~~~~~~-~~~~T~~l~-- 520 (752)
T 2zze_A 459 ESHGLTPEIVXEIAEKEGVKVNIPDNFY---SMVA--KEAER----TKEE----KG-E-ELVDFELLK-DLPDTRRLY-- 520 (752)
T ss_dssp HHHCCCHHHHHHHHTTSSCCCCCCTTHH---HHHH--GGGGC----C-------------CCCSSSSS-SSCCCEEHH--
T ss_pred hccCCCHHHHHHHHHHcCCccCCcccHH---HHHH--HHHHH----Hhhc----cc-c-cchhhHHhc-cCCCceeec--
Confidence 999999999999999999999998 787 4565 44311 1111 00 0 000000000 012344411
Q ss_pred CCeeeecceEEeeecceeEEEeeecceeeeeeecCCeEEEEEecccceeccCCCcCccceeecceeeeeeeccCCceEEe
Q psy16318 260 GGQIYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEAGILL 339 (474)
Q Consensus 260 GGQv~D~G~i~~~~~kskVlav~k~~~~~~~v~~g~~~~l~vD~t~~y~~~Ggqv~d~Gsl~~~~~~~~v~~v~~~~lrf 339 (474)
+|.-++ ....++|+++.. ..+++|+|+|||++||||+|+|.|..
T Consensus 521 ----Y~~~yl--~~~~a~Vl~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~----------------- 564 (752)
T 2zze_A 521 ----YEDPFM--XEFDAXVLRVIX-------------DWVILDATAFYPEGGGQPYDTGVLIV----------------- 564 (752)
T ss_dssp ----HHCTTC--CEEEEEEEEEET-------------TEEEESEECSCCSBTTBCCCCEEEEE-----------------
T ss_pred ----ccCCcc--ceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEe-----------------
Confidence 222221 234567776642 35888999999888888888888832
Q ss_pred cccccccCCCCccceeeeeeecCCcchhhhhhhhcccccCCCCCCCceeeEEEEeEEEeCCEEEEEEeeccccCCCCEEE
Q psy16318 340 DKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLK 419 (474)
Q Consensus 340 DfT~f~p~~ggq~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~k~~~~ivH~~~~~~~l~vGd~V~ 419 (474)
++ ..+.|.+|++.++.++|.+...+.+.+|+.|.
T Consensus 565 ----------------------~g------------------------~~~~V~dv~k~~g~ivH~~~~~~~l~vGd~V~ 598 (752)
T 2zze_A 565 ----------------------NG------------------------REVXVTNVQXVGXVIIHXVEDPGAFXEGMIVH 598 (752)
T ss_dssp ----------------------TT------------------------EEEEEEEEEEETTEEEEEESCGGGCCTTCEEE
T ss_pred ----------------------CC------------------------EEEEEEeeeecCcEEEEeccccCccCcCCeEE
Confidence 11 35789999999999999987667789999999
Q ss_pred EEEcHHhHHHHHHhhHHHHHHHHHHHHHcCCCceeeccccCCCeEEEEccc
Q psy16318 420 LHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIME 470 (474)
Q Consensus 420 ~~ID~~rR~~imrnHTAtHLL~~ALr~vlg~~v~q~Gs~v~~~~lr~d~~~ 470 (474)
++|||+||+.+|++|||+|||++||+++||.|++|+||++.++++|+||..
T Consensus 599 ~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~ 649 (752)
T 2zze_A 599 GXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISH 649 (752)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEEC
T ss_pred EEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeC
Confidence 999999999999999999999999999999999999999999999999964
No 2
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.8e-37 Score=340.07 Aligned_cols=242 Identities=20% Similarity=0.181 Sum_probs=186.0
Q ss_pred eecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCccccc-----cccccCCcccccccCCCCCC
Q psy16318 111 FQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGW-----TGVAIGALPFGLTVPLTFGP 185 (474)
Q Consensus 111 Ffs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~-----~~~lsge~~F~L~~~dtyG~ 185 (474)
|+.+++.+.+.+.. +|. .++..|..+|+.||..|.+||++|+++|+ .+.++|+.+|+|| |||||
T Consensus 386 l~~lv~~~~~~m~~---el~------~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~l~g~~af~Ly--DTyGf 454 (739)
T 2ztg_A 386 LYDLVEMHKKILGF---EFD------VPLSTVQEILELEKERYRTTVSKGTRLVERLVERKKKLEKDDLIELY--DSHGI 454 (739)
T ss_dssp HHHHHHHHHHHHCC---CCS------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCHHHHHHHH--HHHCC
T ss_pred HHHHHHHHHHHHHH---HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH--HhcCC
Confidence 56666666666655 555 78899999999999999999999999987 2349999999999 99999
Q ss_pred CchhhHHHHHhhhcccccc-ceeeccCccCcccccCCCCceeEEEEeeCCeeeecccCCceeeEe--ccCCccccccCCe
Q psy16318 186 SLGLVFLAVAEFLFLVSSC-GFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGIL--LDKSNFYAEQGGQ 262 (474)
Q Consensus 186 P~~l~~~~~~e~~~~v~~~-~f~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~G~~~~iv--ld~TpFYAE~GGQ 262 (474)
|+||+.++|+|+|++||.. +|+ ++|+ .|. .+. ..... . + ..+. ...|.|..
T Consensus 455 P~dlt~~ia~e~g~~vd~~~~F~---~~m~--~q~-~~a-------~~~~~-~------~-~~~~~~~~~T~~l~----- 508 (739)
T 2ztg_A 455 PVELAVGIAAEKGAEVEMPKDIY---AELA--KRH-SKA-------EKVQE-K------K-ITLQNEYPATEKLY----- 508 (739)
T ss_dssp CHHHHHHHHHHTTCBCCCCTTHH---HHHH--HTT-SBC-------CCCCC-C------C-CCCSSCCCCCEECT-----
T ss_pred CHHHHHHHHHHcCCeeCCcccHH---HHHH--HHH-HHH-------hhccc-c------c-hhhhccCCCceeec-----
Confidence 9999999999999999998 788 4565 443 111 00000 0 0 0000 12344411
Q ss_pred eeecceEEeeecceeEEEeeecceeeeeeecCCeEEEEEecccceeccCCCcCccceeecceeeeeeeccCCceEEeccc
Q psy16318 263 IYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKS 342 (474)
Q Consensus 263 v~D~G~i~~~~~kskVlav~k~~~~~~~v~~g~~~~l~vD~t~~y~~~Ggqv~d~Gsl~~~~~~~~v~~v~~~~lrfDfT 342 (474)
+|.-++ ....++|+++.. ..+++|+|+|||++||||+|+|.|..
T Consensus 509 -Y~~~y~--~~~~a~Vl~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~-------------------- 552 (739)
T 2ztg_A 509 -YDDPTL--LEFEAEVIGVEG-------------DFVILNRSAFYPESGGQDNDVGYLIA-------------------- 552 (739)
T ss_dssp -TTCTTC--CEEEEEEEEEET-------------TEEEESEECCCCSBTTBCCCCEEEEE--------------------
T ss_pred -ccCCcc--cEEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEE--------------------
Confidence 222221 234567776642 35888888888888888888888732
Q ss_pred ccccCCCCccceeeeeeecCCcchhhhhhhhcccccCCCCCCCceeeEEEEeEEEeCCEEEEEEeecccc-CCCCEEEEE
Q psy16318 343 NFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTL-RVGDKLKLH 421 (474)
Q Consensus 343 ~f~p~~ggq~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~k~~~~ivH~~~~~~~l-~vGd~V~~~ 421 (474)
++ ..+.|.+|++.++.++|.+. +.+ .+|++|.++
T Consensus 553 -------------------~g------------------------~~~~V~dv~k~~g~ivH~~~--~~~~~~Gd~V~~~ 587 (739)
T 2ztg_A 553 -------------------NG------------------------GKFEVVDVLEADGVVLHVVK--GAKPEVGTKVKGV 587 (739)
T ss_dssp -------------------TT------------------------EEEEECEEEEETTEEEEECC--SSCCCTTCEEEEE
T ss_pred -------------------CC------------------------EEEEEEEEEEECCEEEEEEc--ccCCCCCCEEEEE
Confidence 11 35789999999999999986 344 699999999
Q ss_pred EcHHhHHHHHHhhHHHHHHHHHHHHHcCCCceeeccccCCCeEEEEccc
Q psy16318 422 IDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIME 470 (474)
Q Consensus 422 ID~~rR~~imrnHTAtHLL~~ALr~vlg~~v~q~Gs~v~~~~lr~d~~~ 470 (474)
|||+||+.+|++|||+|||++||+++||.|++|+||+|.++++|+||..
T Consensus 588 VD~~rR~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~ 636 (739)
T 2ztg_A 588 IDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTH 636 (739)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEEC
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeC
Confidence 9999999999999999999999999999999999999999999999963
No 3
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=99.96 E-value=9.5e-31 Score=288.44 Aligned_cols=194 Identities=17% Similarity=0.229 Sum_probs=146.4
Q ss_pred CCCccCcceeeeeeccCCCcHHhHHHHHHHcCceecHH-HHHHHHHHhhcCCCcccCCccceeEecceeecccccccccc
Q psy16318 10 ESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDME-VYEDAKKKAQSEPESQAGMETSVEFCGGTHLAMAHHVGDFC 88 (474)
Q Consensus 10 ~~~~l~G~~aF~LydTyGfP~dlt~~ia~e~g~~vD~~-~f~~~m~~q~~~~~sr~~~~~~~~f~g~thlal~~~lg~~~ 88 (474)
+.++|||++||+||||||||+|||++||+|+|++||++ +|+++|++||+| ||++... .
T Consensus 445 ~~~~l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~--~r~~~~~------------------~- 503 (752)
T 2zze_A 445 GIKEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAER--TKEEKGE------------------E- 503 (752)
T ss_dssp SCSCCCHHHHHHHHHHHCCCHHHHHHHHTTSSCCCCCCTTHHHHHHGGGGC--C--------------------------
T ss_pred CCCccCHHHHHHHHhccCCCHHHHHHHHHHcCCccCCcccHHHHHHHHHHH--Hhhcccc------------------c-
Confidence 45679999999999999999999999999999999999 899999999999 7643200 0
Q ss_pred cchhhhhhccceeeeccCCceeeecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCcccccccc
Q psy16318 89 ISSEEAIAKGSNIVSYCGSKGTFQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWTGV 168 (474)
Q Consensus 89 ~~~~~~~q~gs~v~~~~~~klrFfs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~~~~ 168 (474)
+. .. ..+. .
T Consensus 504 -----~~-------~~----------------------~~~~-------------------------------------~ 512 (752)
T 2zze_A 504 -----LV-------DF----------------------ELLK-------------------------------------D 512 (752)
T ss_dssp -----CC-------CS----------------------SSSS-------------------------------------S
T ss_pred -----ch-------hh----------------------HHhc-------------------------------------c
Confidence 00 00 0000 0
Q ss_pred ccCCcccccccCCCCCCCchhhHHHHHhhhccccccceeeccCc--cCcccccCCCCceeEEEEeeCCeeeecccCCcee
Q psy16318 169 AIGALPFGLTVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTG--LGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEA 246 (474)
Q Consensus 169 lsge~~F~L~~~dtyG~P~~l~~~~~~e~~~~v~~~~f~~~~~~--~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~G~~~ 246 (474)
+ +.+. |.+|+.. ++ .++ +|+++.. .
T Consensus 513 ~-~~T~-------------------------------~l~Y~~~yl~~--~~a------~Vl~i~~-------------~ 539 (752)
T 2zze_A 513 L-PDTR-------------------------------RLYYEDPFMXE--FDA------XVLRVIX-------------D 539 (752)
T ss_dssp S-CCCE-------------------------------EHHHHCTTCCE--EEE------EEEEEET-------------T
T ss_pred C-CCce-------------------------------eecccCCccce--EEE------EEEEEEc-------------C
Confidence 0 0111 2222221 22 344 8887653 4
Q ss_pred eEeccCCccccccCCeeeecceEEeeecceeEEEeeecc-eeeee------eecCCeEEEEEeccccee-----------
Q psy16318 247 GILLDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNK-QFVDS------VSSGTEAGILLDKSNFYA----------- 308 (474)
Q Consensus 247 ~ivld~TpFYAE~GGQv~D~G~i~~~~~kskVlav~k~~-~~~~~------v~~g~~~~l~vD~t~~y~----------- 308 (474)
.||||+||||||+|||++|+|+|...+....|.++++.+ .++|. +++|++|.+.||..+|+.
T Consensus 540 ~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~~~~~l~vGd~V~~~VD~~rR~~~mr~HTAtHLL 619 (752)
T 2zze_A 540 WVILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXVGXVIIHXVEDPGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVL 619 (752)
T ss_dssp EEEESEECSCCSBTTBCCCCEEEEETTEEEEEEEEEEETTEEEEEESCGGGCCTTCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCCCCCCCCEEEEEeCCEEEEEEeeeecCcEEEEeccccCccCcCCeEEEEEeHHHHHHHHHHhHHHHHH
Confidence 799999999999999999999998765678899998864 46663 457999999999999982
Q ss_pred ------ccCCCcCccceeecceeeeeeeccCCceEEecccccccCCCCccceeeeee
Q psy16318 309 ------EQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMI 359 (474)
Q Consensus 309 ------~~Ggqv~d~Gsl~~~~~~~~v~~v~~~~lrfDfT~f~p~~ggq~~d~g~~~ 359 (474)
..|.++.|.|+. +.++++||||+|+.+++.+++..+|.+.
T Consensus 620 ~~ALr~vlG~~v~q~Gs~-----------v~~d~~rfDFs~~~~lt~edL~~IE~~v 665 (752)
T 2zze_A 620 MGALVRVLGRHVWQAGSQ-----------LTTDWARLDISHYXRISEEELXEIEMLA 665 (752)
T ss_dssp HHHHHHHHCTTCEEEEEE-----------ECSSCEEEEEECSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCceeeecCc-----------ccCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 239999899998 7899999999999999999998888763
No 4
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=99.95 E-value=8.8e-30 Score=280.59 Aligned_cols=186 Identities=24% Similarity=0.286 Sum_probs=145.2
Q ss_pred cCcceeeeeeccCCCcHHhHHHHHHHcCceecHH-HHHHHHHHhhcCCCcccCCccceeEecceeecccccccccccchh
Q psy16318 14 LPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDME-VYEDAKKKAQSEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSE 92 (474)
Q Consensus 14 l~G~~aF~LydTyGfP~dlt~~ia~e~g~~vD~~-~f~~~m~~q~~~~~sr~~~~~~~~f~g~thlal~~~lg~~~~~~~ 92 (474)
|||++||+||||||||+|||++||+|+|++||++ +|+++|++||+| ||++...
T Consensus 440 l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~--a~~~~~~------------------------ 493 (739)
T 2ztg_A 440 LEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAELAKRHSK--AEKVQEK------------------------ 493 (739)
T ss_dssp CCHHHHHHHHHHHCCCHHHHHHHHHHTTCBCCCCTTHHHHHHHTTSB--CCCCCCC------------------------
T ss_pred CCHHHHHHHHHhcCCCHHHHHHHHHHcCCeeCCcccHHHHHHHHHHH--Hhhcccc------------------------
Confidence 9999999999999999999999999999999999 899999999999 7653100
Q ss_pred hhhhccceeeeccCCceeeecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCccccccccccCC
Q psy16318 93 EAIAKGSNIVSYCGSKGTFQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWTGVAIGA 172 (474)
Q Consensus 93 ~~~q~gs~v~~~~~~klrFfs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~~~~lsge 172 (474)
+ + .+. ...+.
T Consensus 494 -----------~---------------------~-~~~-------------------------------------~~~~~ 503 (739)
T 2ztg_A 494 -----------K---------------------I-TLQ-------------------------------------NEYPA 503 (739)
T ss_dssp -----------C---------------------C-CCS-------------------------------------SCCCC
T ss_pred -----------c---------------------h-hhh-------------------------------------ccCCC
Confidence 0 0 000 00001
Q ss_pred cccccccCCCCCCCchhhHHHHHhhhccccccceeeccCc--cCcccccCCCCceeEEEEeeCCeeeecccCCceeeEec
Q psy16318 173 LPFGLTVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTG--LGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGILL 250 (474)
Q Consensus 173 ~~F~L~~~dtyG~P~~l~~~~~~e~~~~v~~~~f~~~~~~--~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~G~~~~ivl 250 (474)
+ .|.+|+.. .+ .++ +|+++.. ..|||
T Consensus 504 T-------------------------------~~l~Y~~~y~~~--~~a------~Vl~i~~-------------~~VVL 531 (739)
T 2ztg_A 504 T-------------------------------EKLYYDDPTLLE--FEA------EVIGVEG-------------DFVIL 531 (739)
T ss_dssp C-------------------------------EECTTTCTTCCE--EEE------EEEEEET-------------TEEEE
T ss_pred c-------------------------------eeecccCCcccE--EEE------EEEEEEc-------------CEEEE
Confidence 1 12223221 22 344 8887653 46999
Q ss_pred cCCccccccCCeeeecceEEeeecceeEEEeeecc-eeeeee-----ecCCeEEEEEeccccee----------------
Q psy16318 251 DKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNK-QFVDSV-----SSGTEAGILLDKSNFYA---------------- 308 (474)
Q Consensus 251 d~TpFYAE~GGQv~D~G~i~~~~~kskVlav~k~~-~~~~~v-----~~g~~~~l~vD~t~~y~---------------- 308 (474)
|+||||||+|||++|+|+|...+....|.++++.+ .++|.+ ++|++|.+.||..+|+.
T Consensus 532 D~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~~~~~~~Gd~V~~~VD~~rR~~~m~~HTAtHLL~~ALr 611 (739)
T 2ztg_A 532 NRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEADGVVLHVVKGAKPEVGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQ 611 (739)
T ss_dssp SEECCCCSBTTBCCCCEEEEETTEEEEECEEEEETTEEEEECCSSCCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEcccCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998755568899998864 466643 57999999999999972
Q ss_pred -ccCCCcCccceeecceeeeeeeccCCceEEecccccccCCCCccceeeee
Q psy16318 309 -EQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 358 (474)
Q Consensus 309 -~~Ggqv~d~Gsl~~~~~~~~v~~v~~~~lrfDfT~f~p~~ggq~~d~g~~ 358 (474)
..|.|+.+.||+ |.++++||||+|+.+++.+++..+|.+
T Consensus 612 ~vlG~~v~q~GS~-----------v~~d~~r~DF~~~~~lT~edL~~IE~~ 651 (739)
T 2ztg_A 612 KVLGNHVWQAGAR-----------KEFSKARLDVTHFRRPSEEEIKEIEML 651 (739)
T ss_dssp HHHCTTCCEEECC-----------SCCSSCEEEEECSSCCCHHHHHHHHHH
T ss_pred HhcCCcEEecCcE-----------EcCCcEEEEEeCCCCCCHHHHHHHHHH
Confidence 238899999999 889999999999999999999888876
No 5
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=99.92 E-value=1.6e-25 Score=215.40 Aligned_cols=119 Identities=29% Similarity=0.335 Sum_probs=109.2
Q ss_pred ceeeeeeeccCCceEEecccccccCCCCccceeeeeeecCCcchhhhhhhhcccccCCCCCCCceeeEEEEeEEEe-CCE
Q psy16318 323 KQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKK-KKL 401 (474)
Q Consensus 323 ~~~~~~v~~v~~~~lrfDfT~f~p~~ggq~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~k~-~~~ 401 (474)
++|.++|.++.++.+.||.|.|||.+|||+.|.|++. + +.|.+|++. ++.
T Consensus 16 ~~~~a~V~~~~~~~vvld~T~Fype~GGQ~~D~G~i~---~--------------------------~~V~~v~~~~~~~ 66 (216)
T 2e1b_A 16 KEAKGRVLEIRDNAILLDQTIFYPTGGGQPHDRGTIN---G--------------------------VEVLDVYKDEEGN 66 (216)
T ss_dssp CEEEECBCCCCSSCCCBSCCCSCCCCTTCCCCCEEET---T--------------------------EEEEEEECCTTCC
T ss_pred ceeeEEEEEEeCCEEEEeCCCccCCCCCCCCCEEEEc---c--------------------------EEEEEEEECcCCE
Confidence 5788999999888999999999999999999999994 1 579999997 899
Q ss_pred EEEEEeeccccCCCCEEEEEEcHHhHHHHHHhhHHHHHHHHHHHHHcCCC-ceeeccccCCCeEEEEccc
Q psy16318 402 VKLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATHILNHALRFVLGPE-ADQKGSLVYRYHLHENIME 470 (474)
Q Consensus 402 ivH~~~~~~~l~vGd~V~~~ID~~rR~~imrnHTAtHLL~~ALr~vlg~~-v~q~Gs~v~~~~lr~d~~~ 470 (474)
++|.+...+.+.+|++|.+.|||+||+.+|++|||+|||++||+++||.+ +++.||++.|+++|+||..
T Consensus 67 i~H~~~~~~~l~~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~ 136 (216)
T 2e1b_A 67 VWHVVKEPEKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAY 136 (216)
T ss_dssp CEEEESCGGGCCSSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEEC
T ss_pred EEEEEccCCCcCCCCEEEEEECHHHHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeC
Confidence 99998765679999999999999999999999999999999999999964 6889999999999999964
No 6
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=99.91 E-value=8.3e-25 Score=213.66 Aligned_cols=114 Identities=22% Similarity=0.311 Sum_probs=104.5
Q ss_pred ceeeeeeeccCCc----eEEecccccccCCCCccceeeeeeecCCcchhhhhhhhcccccCCCCCCCceeeEEEEeEEEe
Q psy16318 323 KQFVDSVSSGTEA----GILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKK 398 (474)
Q Consensus 323 ~~~~~~v~~v~~~----~lrfDfT~f~p~~ggq~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~k~ 398 (474)
+.|.++|.++.++ .|.||.|.|||.+|||++|.|++.. +.|.+|++.
T Consensus 14 ~~~~a~V~~~~~~~~~~~vvLd~T~FYpegGGQ~~D~G~i~~-----------------------------~~V~~v~~~ 64 (241)
T 3kew_A 14 KEFKGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDG-----------------------------IKVLDVYEE 64 (241)
T ss_dssp CEEEECEEEEEEETTEEEEEESEECCCCCBTTBCCCCEEETT-----------------------------EEEEEEEEE
T ss_pred ceeEEEEEEEEecCCeEEEEEeCCcccCCCCCCCCCEEEEee-----------------------------EEEEEEEEe
Confidence 5788999888765 7999999999999999999999941 579999999
Q ss_pred CCEEEEEEeeccccCCCCEEEEEEcHHhHHHHHHhhHHHHHHHHHHHHHcCCCceeeccccCCCeEEEEcc
Q psy16318 399 KKLVKLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIM 469 (474)
Q Consensus 399 ~~~ivH~~~~~~~l~vGd~V~~~ID~~rR~~imrnHTAtHLL~~ALr~vlg~~v~q~Gs~v~~~~lr~d~~ 469 (474)
++.++|.+. +.+.+|+.|.+.|||+||+.+|++|||+|||++||+++||.+ |+|+++.++++|+||.
T Consensus 65 ~g~i~H~~~--~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~--~~G~~v~~~~~r~Df~ 131 (241)
T 3kew_A 65 EGKVYHVLE--KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIV 131 (241)
T ss_dssp TTEEEEEES--SCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECSSCEEEEEE
T ss_pred CCEEEEEEC--CcCCCCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCC--eEeccccCCeEEEEEC
Confidence 999999986 678899999999999999999999999999999999999954 7999999999999996
No 7
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=99.62 E-value=6e-17 Score=169.09 Aligned_cols=55 Identities=35% Similarity=0.652 Sum_probs=51.0
Q ss_pred CCCccCcceeeeeeccCCCcHHhHHHHHHHcCceecHHHHHHHHHHhhcCCCcccCC
Q psy16318 10 ESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQAGM 66 (474)
Q Consensus 10 ~~~~l~G~~aF~LydTyGfP~dlt~~ia~e~g~~vD~~~f~~~m~~q~~~~~sr~~~ 66 (474)
+.++|||++||+||||||||+|||++||+|+|++||+++|+++|++||+| ||+++
T Consensus 375 ~~~~l~G~~af~LyDTyGfP~dLt~eia~e~g~~vD~~gF~~~m~~q~~r--ar~~~ 429 (465)
T 1yfs_A 375 GRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRER--ARKHF 429 (465)
T ss_dssp TCCEECHHHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHT--TTTC-
T ss_pred CCCcCCHHHHHhhhhccCCCHHHHHHHHHHcCCeeCHHHHHHHHHHHHHH--HHhhh
Confidence 45579999999999999999999999999999999999999999999999 77664
No 8
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=99.53 E-value=8.2e-16 Score=159.72 Aligned_cols=52 Identities=40% Similarity=0.724 Sum_probs=50.1
Q ss_pred CccCcceeeeeeccCCCcHHhHHHHHHHcCceecHHHHHHHHHHhhcCCCcccC
Q psy16318 12 KVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQAG 65 (474)
Q Consensus 12 ~~l~G~~aF~LydTyGfP~dlt~~ia~e~g~~vD~~~f~~~m~~q~~~~~sr~~ 65 (474)
++|||++||+||||||||+|||++||+|+|++||+++|+++|++||+| ||++
T Consensus 387 ~~l~g~~af~LyDTyGfP~dLt~eia~e~g~~vD~~~F~~~m~~qr~r--ar~~ 438 (441)
T 3hy0_A 387 DTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRR--AREA 438 (441)
T ss_dssp SEECHHHHHHHHHHHCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHH--HHHH
T ss_pred CCCCHHHHHhhhhcCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHHH--HHhc
Confidence 689999999999999999999999999999999999999999999999 8764
No 9
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=99.30 E-value=1.6e-14 Score=150.14 Aligned_cols=96 Identities=22% Similarity=0.206 Sum_probs=87.6
Q ss_pred ceeeecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCcccccc-------ccccCCcccccccC
Q psy16318 108 KGTFQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWT-------GVAIGALPFGLTVP 180 (474)
Q Consensus 108 klrFfs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~~-------~~lsge~~F~L~~~ 180 (474)
.++|+.+++.+.+.+...||+|. .++..|..+|+.||..|.+||++|+++|+. +.++|+.+|+||
T Consensus 327 ~~fl~~Lv~~v~~~m~~~yPeL~------~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~~~~l~g~~af~Ly-- 398 (441)
T 3hy0_A 327 ETFFYKLVGPLIDVMGSAGEDLK------RQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDGETAFRLY-- 398 (441)
T ss_dssp SCCGGGGHHHHHHHHGGGGHHHH------HTHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSCCSSEECHHHHHHHH--
T ss_pred CccHHHHHHHHHHHHhhhhhHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhh--
Confidence 34449999999999999999998 888999999999999999999999998871 469999999999
Q ss_pred CCCCCCchhhHHHHHhhhccccccceeeccCccC
Q psy16318 181 LTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLG 214 (474)
Q Consensus 181 dtyG~P~~l~~~~~~e~~~~v~~~~f~~~~~~~~ 214 (474)
||||||+||+.++|+|+|++||..+|+ ++|+
T Consensus 399 DTyGfP~dLt~eia~e~g~~vD~~~F~---~~m~ 429 (441)
T 3hy0_A 399 DTYGFPVDLTADVCRERNIKVDEAGFE---AAME 429 (441)
T ss_dssp HHHCCCHHHHHHHHHTTTCEECHHHHH---HHHH
T ss_pred hcCCCCHHHHHHHHHHcCCcccHHHHH---HHHH
Confidence 999999999999999999999999887 4565
No 10
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=99.30 E-value=2.5e-14 Score=149.47 Aligned_cols=98 Identities=21% Similarity=0.210 Sum_probs=88.0
Q ss_pred CCceee-ecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCccccc--------cc--cccCCcc
Q psy16318 106 GSKGTF-QSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGW--------TG--VAIGALP 174 (474)
Q Consensus 106 ~~klrF-fs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~--------~~--~lsge~~ 174 (474)
|.+.-| +.+++.+.+.+...||+|. .++..|..+|+.||..|.+||++|+++|+ .+ .++|+.+
T Consensus 311 g~~~~fl~~Lv~~v~~~m~~~yPel~------~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~~~~~~~l~G~~a 384 (465)
T 1yfs_A 311 GIENPFLYKGVDLVVDIMKEPYPELE------LSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEGRKTLSGKEV 384 (465)
T ss_dssp TCCSCCHHHHHHHHHHHHTTTCTHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHH
T ss_pred CCCchhHHHHHHHHHHHHhccCchhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHH
Confidence 334444 9999999999999999998 88899999999999999999999999886 12 4999999
Q ss_pred cccccCCCCCCCchhhHHHHHhhhccccccceeeccCccC
Q psy16318 175 FGLTVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLG 214 (474)
Q Consensus 175 F~L~~~dtyG~P~~l~~~~~~e~~~~v~~~~f~~~~~~~~ 214 (474)
|+|| ||||||+||+.++|+|+|++||..+|+ ++|+
T Consensus 385 f~Ly--DTyGfP~dLt~eia~e~g~~vD~~gF~---~~m~ 419 (465)
T 1yfs_A 385 FTAY--DTYGFPVDLIDEIAREKGLGIDLEGFQ---CELE 419 (465)
T ss_dssp HHHH--HTSCCCHHHHHHHHHTTTCEECHHHHH---HHHH
T ss_pred Hhhh--hccCCCHHHHHHHHHHcCCeeCHHHHH---HHHH
Confidence 9999 999999999999999999999999888 4566
No 11
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=99.29 E-value=4.1e-13 Score=128.87 Aligned_cols=97 Identities=20% Similarity=0.102 Sum_probs=78.4
Q ss_pred eEeccCCccccccCCeeeecceEEeeecceeEEEeeec-c-eeee------eeecCCeEEEEEeccccee----------
Q psy16318 247 GILLDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYN-K-QFVD------SVSSGTEAGILLDKSNFYA---------- 308 (474)
Q Consensus 247 ~ivld~TpFYAE~GGQv~D~G~i~~~~~kskVlav~k~-~-~~~~------~v~~g~~~~l~vD~t~~y~---------- 308 (474)
.|+||+||||||+|||.+|+|+|. . ..|.++++. + .++| .+++|+++.+.+|..+|+.
T Consensus 29 ~vvld~T~Fype~GGQ~~D~G~i~---~-~~V~~v~~~~~~~i~H~~~~~~~l~~g~~v~~~vD~~rR~~~~~~HTA~Hl 104 (216)
T 2e1b_A 29 AILLDQTIFYPTGGGQPHDRGTIN---G-VEVLDVYKDEEGNVWHVVKEPEKFKVGDEVELKIDWDYRYKLMRIHTGLHL 104 (216)
T ss_dssp CCCBSCCCSCCCCTTCCCCCEEET---T-EEEEEEECCTTCCCEEEESCGGGCCSSSCEEEEECHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCccCCCCCCCCCEEEEc---c-EEEEEEEECcCCEEEEEEccCCCcCCCCEEEEEECHHHHHHHHHHhHHHHH
Confidence 799999999999999999999996 2 789999885 3 4555 3557999999999999972
Q ss_pred -------ccCCC-cCccceeecceeeeeeeccCCceEEecccccccCCCCccceeeeee
Q psy16318 309 -------EQGGQ-IYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMI 359 (474)
Q Consensus 309 -------~~Ggq-v~d~Gsl~~~~~~~~v~~v~~~~lrfDfT~f~p~~ggq~~d~g~~~ 359 (474)
..|.+ +...|+. +.++++||||+++.|++.+ +..+|.+.
T Consensus 105 L~~Al~~~~g~~~~~~~g~~-----------v~~~~~r~Df~~~~~lt~e-l~~IE~~v 151 (216)
T 2e1b_A 105 LEHVLNEVLGEGNWQLVGSG-----------MSVEKGRYDIAYPENLNKY-KEQIISLF 151 (216)
T ss_dssp HHHHHHHHHTTTSCEEEECC-----------BCSSEEEEEEECSSCGGGG-HHHHHHHH
T ss_pred HHHHHHHHcCCccceeeeee-----------EcCCcEEEEEeCCCCCCHH-HHHHHHHH
Confidence 22652 3445776 7899999999999988875 88887763
No 12
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=99.27 E-value=9e-13 Score=128.55 Aligned_cols=96 Identities=18% Similarity=0.140 Sum_probs=79.3
Q ss_pred ceeeEeccCCccccccCCeeeecceEEeeecceeEEEeeecc-eeee----eeecCCeEEEEEecccceec---------
Q psy16318 244 TEAGILLDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNK-QFVD----SVSSGTEAGILLDKSNFYAE--------- 309 (474)
Q Consensus 244 ~~~~ivld~TpFYAE~GGQv~D~G~i~~~~~kskVlav~k~~-~~~~----~v~~g~~~~l~vD~t~~y~~--------- 309 (474)
+.+.|+||+||||||+|||.+|+|+|. ...|.++++.+ .++| .+.+|+++.+.+|..+|+..
T Consensus 28 ~~~~vvLd~T~FYpegGGQ~~D~G~i~----~~~V~~v~~~~g~i~H~~~~~l~~g~~V~~~vD~~rR~~~~~~HTa~HL 103 (241)
T 3kew_A 28 GKFHVLLDQTAFFPGGGGQMGDLGLID----GIKVLDVYEEEGKVYHVLEKEPKKLKNLQCELDWERRFDGMQQHLGQHL 103 (241)
T ss_dssp TEEEEEESEECCCCCBTTBCCCCEEET----TEEEEEEEEETTEEEEEESSCCCCCSSEEEEECHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCcccCCCCCCCCCEEEEe----eEEEEEEEEeCCEEEEEECCcCCCCCEEEEEECHHHhhhHHHHHHHHHH
Confidence 468999999999999999999999995 36788888764 4555 45689999999999999722
Q ss_pred --------cCCCcCccceeecceeeeeeeccCCceEEecccccccCCCCccceeeee
Q psy16318 310 --------QGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFM 358 (474)
Q Consensus 310 --------~Ggqv~d~Gsl~~~~~~~~v~~v~~~~lrfDfT~f~p~~ggq~~d~g~~ 358 (474)
.|.+ +.|+. +.++++||||+ .|++.+++..+|.+
T Consensus 104 L~~al~~~~g~~--~~G~~-----------v~~~~~r~Df~--~~lt~e~l~~IE~~ 145 (241)
T 3kew_A 104 LSGCFYDLFGAN--TCGFH-----------LGKEISTVDIV--GFLDEKTIREAEKE 145 (241)
T ss_dssp HHHHHHHHHCCC--EEEEE-----------ECSSCEEEEEE--SCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCC--eEecc-----------ccCCeEEEEEC--CCCCHHHHHHHHHH
Confidence 2765 57887 77899999999 88999999888765
No 13
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=97.50 E-value=0.00021 Score=68.16 Aligned_cols=68 Identities=12% Similarity=0.097 Sum_probs=50.8
Q ss_pred EeCCEEEEEEeeccccCCCCEEEEEEcHHhH-HHHHHhhHHHHHHHHHHHHHcCCCceeeccccCCCeEEEEcc
Q psy16318 397 KKKKLVKLLHTLSHTLRVGDKLKLHIDTARR-RPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIM 469 (474)
Q Consensus 397 k~~~~ivH~~~~~~~l~vGd~V~~~ID~~rR-~~imrnHTAtHLL~~ALr~vlg~~v~q~Gs~v~~~~lr~d~~ 469 (474)
+.+|.+++. ...+..|+.|. .|+++.+ -..|.+|||+|||++|+++++|. +....+++.++.+++||.
T Consensus 39 kvNg~l~dL---~~~l~~~~~ve-~it~~~~~g~~~~~HS~~HlL~~A~~~~~~~-~~~~~g~~~~~g~y~d~~ 107 (224)
T 1tke_A 39 RVNGELVDA---CDLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPH-TKMAIGPVIDNGFYYDVD 107 (224)
T ss_dssp EETTEEEET---TCCBCSCEEEE-EECTTSHHHHHHHHHHHHHHHHHHHHHHSTT-CEECCCCEETTEEEEEEE
T ss_pred EECCEEecc---ceEcCCCCeEE-EEecCchhHHHHHHHHHHHHHHHHHHHHCCC-cEEEECCccCCeEEEEEe
Confidence 357776653 45677787777 4787766 47899999999999999999973 222234566888999986
No 14
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=97.27 E-value=0.00022 Score=78.03 Aligned_cols=69 Identities=13% Similarity=0.178 Sum_probs=54.2
Q ss_pred EeCCEEEEEEeeccccCCCCEEEEEEcHHhHHHHHHhhHHHHHHHHHHHHHcCCCceeeccccCCCeEEEEcc
Q psy16318 397 KKKKLVKLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIM 469 (474)
Q Consensus 397 k~~~~ivH~~~~~~~l~vGd~V~~~ID~~rR~~imrnHTAtHLL~~ALr~vlg~~v~q~Gs~v~~~~lr~d~~ 469 (474)
+.+|.+++. ...+..+..|...-..+.+-..+.+|||+|||++|+++++|.+..|.|+.+ ++.+|+||.
T Consensus 41 ~vng~~~dl---~~~l~~d~~v~~~~~~~~~g~~~~~HSa~HlL~~A~~~~~~~~~~~~g~~~-~~g~~~Df~ 109 (645)
T 1nyr_A 41 KFNGQLVDL---TKPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFD 109 (645)
T ss_dssp EETTEEECT---TSCCCSCBCCCEECTTSHHHHHHHHHHHHHHHHHHHHHHSSSCEECCCCEE-TTEEEEEEE
T ss_pred EECCEEEeC---CcccCCCCeEEEeeccchhHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCceEEEec
Confidence 356765542 345555556665444555678999999999999999999998999999999 899999996
No 15
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=96.70 E-value=0.0021 Score=70.55 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=50.7
Q ss_pred EeCCEEEEEEeeccccCCCCEEEEEEcHH-hHHHHHHhhHHHHHHHHHHHHHcCCCceeeccccCCCeEEEEccc
Q psy16318 397 KKKKLVKLLHTLSHTLRVGDKLKLHIDTA-RRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIME 470 (474)
Q Consensus 397 k~~~~ivH~~~~~~~l~vGd~V~~~ID~~-rR~~imrnHTAtHLL~~ALr~vlg~~v~q~Gs~v~~~~lr~d~~~ 470 (474)
+.+|.+++. ...+..+.+|. .|+++ .+-..+.+|||+|||++|+++++|..-.+.|+.+. +.+++||..
T Consensus 39 ~vng~~~dl---~~~l~~d~~~~-~~~~~~~~~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i~-~gfy~Df~~ 108 (642)
T 1qf6_A 39 RVNGELVDA---CDLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVID-NGFYYDVDL 108 (642)
T ss_dssp EETTEEEET---TSCBCSCEECC-EECTTSHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCEET-TEEEEEEEC
T ss_pred EECCEEecc---ccccCCCceEE-EeecCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCccC-CeeEEEEeC
Confidence 357766653 34455554444 45555 56788999999999999999999864458999887 779999863
No 16
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=94.42 E-value=0.0094 Score=53.36 Aligned_cols=70 Identities=13% Similarity=0.047 Sum_probs=53.8
Q ss_pred ceee---cccccccccccchhhhhhccce-eeeccCCceeeecCCCCCChhhhhcccccchhhhccchhhhhcccccccc
Q psy16318 75 GTHL---AMAHHVGDFCISSEEAIAKGSN-IVSYCGSKGTFQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSC 150 (474)
Q Consensus 75 ~thl---al~~~lg~~~~~~~~~~q~gs~-v~~~~~~klrFfs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee 150 (474)
.+|| |+++++|.+ +.++++. +... |.+++ |.+..+++++++..+|+.+ |+.+.-+.++..++
T Consensus 11 a~HlL~~Al~~~~~~~------~~~~~~~~i~~~-~~~~~-~d~~~~~t~e~l~~IE~~~------n~~I~~~~pi~~~~ 76 (157)
T 1v4p_A 11 ALHVVKGAVVKVLGSE------AKWTYSTYVKGN-KGVLI-VKFDRKPSDEEIREIERLA------NEKVKENAPIKIYE 76 (157)
T ss_dssp HHHHHHHHHHHHHCGG------GCCEEEEEEETT-EEEEE-EECSSCCCHHHHHHHHHHH------HHHHHHTCBCEEEE
T ss_pred HHHHHHHHHHHHhCCC------cEEecCceecCC-CcEEE-EEeCCCCCHHHHHHHHHHH------HHHHHcCCCEEEEE
Confidence 3788 999999977 6677763 3321 12344 5556799999999999999 88899999999999
Q ss_pred cCHHHHHh
Q psy16318 151 LSFRGVWE 158 (474)
Q Consensus 151 ~~F~ktl~ 158 (474)
+.-.++++
T Consensus 77 ~~~~eA~~ 84 (157)
T 1v4p_A 77 LPREEAEK 84 (157)
T ss_dssp EEHHHHHH
T ss_pred eCHHHHHH
Confidence 88777766
No 17
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=90.95 E-value=0.05 Score=59.47 Aligned_cols=66 Identities=12% Similarity=0.076 Sum_probs=57.7
Q ss_pred eee---cccccccccccchhhhhhccceeeeccCCceee-ecCCCCCChhhhhcccccchhhhccchhhhhccccccccc
Q psy16318 76 THL---AMAHHVGDFCISSEEAIAKGSNIVSYCGSKGTF-QSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCL 151 (474)
Q Consensus 76 thl---al~~~lg~~~~~~~~~~q~gs~v~~~~~~klrF-fs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~ 151 (474)
||| |+++++|++ ..|.|+.+ ++ .++| |++..+++++++..+|+.+ |+.+.-+.++..+++
T Consensus 78 ~HlL~~A~~~~~~~~------~~~~g~~~-~~---g~~~Df~~~~~~t~edl~~IE~~m------~~iI~~~~pi~~~~~ 141 (645)
T 1nyr_A 78 AHLMAHAIKRLYGNV------KFGVGPVI-EG---GFYYDFDIDQNISSDDFEQIEKTM------KQIVNENMKIERKVV 141 (645)
T ss_dssp HHHHHHHHHHHSSSC------EECCCCEE-TT---EEEEEEECSSCCCSTTHHHHHHHH------HHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHcCCc------EEEECCcc-CC---ceEEEecCCCCCCHHHHHHHHHHH------HHHHHhCCCeEEEEe
Confidence 899 999999998 88899977 55 7888 9999999999999999999 888999999999888
Q ss_pred CHHHHH
Q psy16318 152 SFRGVW 157 (474)
Q Consensus 152 ~F~ktl 157 (474)
+-.+++
T Consensus 142 ~~~eA~ 147 (645)
T 1nyr_A 142 SRDEAK 147 (645)
T ss_dssp TTTHHH
T ss_pred cHHHHH
Confidence 755544
No 18
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=79.30 E-value=0.58 Score=44.15 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=53.7
Q ss_pred eee---cccccccc-cccchhhhhhccceeeeccCCceee-ecCCCCCChhhhhcccccchhhhccchhhhhcccccccc
Q psy16318 76 THL---AMAHHVGD-FCISSEEAIAKGSNIVSYCGSKGTF-QSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSC 150 (474)
Q Consensus 76 thl---al~~~lg~-~~~~~~~~~q~gs~v~~~~~~klrF-fs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee 150 (474)
+|| |+++++|. + +.+ | .+.+. .++| |++..+++++++..+|+.+ |+.+.-+.++..++
T Consensus 76 ~HlL~~A~~~~~~~~~------~~~-g-~~~~~---g~y~d~~~~~~~t~edl~~IE~~m------~~iI~~~~pi~~~~ 138 (224)
T 1tke_A 76 AHLLGHAIKQLWPHTK------MAI-G-PVIDN---GFYYDVDLDRTLTQEDVEALEKRM------HELAEKNYDVIKKK 138 (224)
T ss_dssp HHHHHHHHHHHSTTCE------ECC-C-CEETT---EEEEEEECSSCCCHHHHHHHHHHH------HHHHTTCCBCEEEE
T ss_pred HHHHHHHHHHHCCCcE------EEE-C-CccCC---eEEEEEeCCCCCCHHHHHHHHHHH------HHHHhCCCCEEEEE
Confidence 898 99999974 4 333 2 22233 6788 9999999999999999999 88899999999999
Q ss_pred cCHHHHHhc
Q psy16318 151 LSFRGVWEH 159 (474)
Q Consensus 151 ~~F~ktl~~ 159 (474)
++-.++++.
T Consensus 139 ~~~~eA~~~ 147 (224)
T 1tke_A 139 VSWHEARET 147 (224)
T ss_dssp CCHHHHHHH
T ss_pred ecHHHHHHH
Confidence 888887763
No 19
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=75.47 E-value=0.81 Score=50.03 Aligned_cols=68 Identities=16% Similarity=0.092 Sum_probs=56.8
Q ss_pred eee---cccccccccccchhhhhhccceeeeccCCceee-ecCCCCCChhhhhcccccchhhhccchhhhhccccccccc
Q psy16318 76 THL---AMAHHVGDFCISSEEAIAKGSNIVSYCGSKGTF-QSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCL 151 (474)
Q Consensus 76 thl---al~~~lg~~~~~~~~~~q~gs~v~~~~~~klrF-fs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~ 151 (474)
||| |+++++|+. -.+.|+.+. . ..+| |++..+++++++..+|..+ |+.+.-+.++..+++
T Consensus 76 ~HlL~~Al~~~~~~~------~~~~G~~i~-~---gfy~Df~~~~~~t~edl~~IE~~m------~~iI~~~~~v~~~~~ 139 (642)
T 1qf6_A 76 AHLLGHAIKQLWPHT------KMAIGPVID-N---GFYYDVDLDRTLTQEDVEALEKRM------HELAEKNYDVIKKKV 139 (642)
T ss_dssp HHHHHHHHHHHCTTC------EECCCCEET-T---EEEEEEECSSCCCHHHHHHHHHHH------HHHHHHTCBEEEEEC
T ss_pred HHHHHHHHHHhCCCc------EEEECCccC-C---eeEEEEeCCCCCCHHHHHHHHHHH------HHHHHcCCCEEEEEe
Confidence 899 999999773 247788654 3 5788 9999999999999999999 888999999999999
Q ss_pred CHHHHHhc
Q psy16318 152 SFRGVWEH 159 (474)
Q Consensus 152 ~F~ktl~~ 159 (474)
+-.++++.
T Consensus 140 ~~~eA~~~ 147 (642)
T 1qf6_A 140 SWHEARET 147 (642)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 87666654
No 20
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=36.27 E-value=12 Score=32.81 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=19.7
Q ss_pred ceeEecceeecccccccccccchh
Q psy16318 69 SVEFCGGTHLAMAHHVGDFCISSE 92 (474)
Q Consensus 69 ~~~f~g~thlal~~~lg~~~~~~~ 92 (474)
++.+|||||+.....+|.++|..-
T Consensus 112 ~~~~C~GtHv~~Tg~I~~fki~~~ 135 (157)
T 1v4p_A 112 NVNACNKEHTKTTGEIGPIKIRKV 135 (157)
T ss_dssp EEEECCSCCCSBGGGTCCEEEEEE
T ss_pred eEeCCCCCccCChhhcceEEEEEE
Confidence 467899999988888999976643
No 21
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=26.24 E-value=36 Score=27.97 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=40.1
Q ss_pred CCCccCcceeeeeeccCCCcHHhHHHHHHHcCc----eecHHHHHHHHHHhhcC
Q psy16318 10 ESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGL----SVDMEVYEDAKKKAQSE 59 (474)
Q Consensus 10 ~~~~l~G~~aF~LydTyGfP~dlt~~ia~e~g~----~vD~~~f~~~m~~q~~~ 59 (474)
+.+.|+++++-.++-..|+|-+-+.+|.++... .+|.++|-.+|..-..+
T Consensus 27 ~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~~~~ 80 (106)
T 1eh2_A 27 VNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLVYCA 80 (106)
T ss_dssp SSSCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHHHHH
T ss_pred CCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHH
Confidence 456899999888888899999988888876543 48999999999765433
No 22
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=25.35 E-value=33 Score=27.56 Aligned_cols=49 Identities=10% Similarity=0.020 Sum_probs=39.2
Q ss_pred CCCCccCcceeeeeeccCCCcHHhHHHHHHHcCc----eecHHHHHHHHHHhh
Q psy16318 9 GESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGL----SVDMEVYEDAKKKAQ 57 (474)
Q Consensus 9 ~~~~~l~G~~aF~LydTyGfP~dlt~~ia~e~g~----~vD~~~f~~~m~~q~ 57 (474)
.+.+.|+++++-.++...|+|-+.+.+|.++... .+|.++|..+|....
T Consensus 23 d~dG~Is~~el~~~l~~~~l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~~ 75 (99)
T 1qjt_A 23 GNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLVA 75 (99)
T ss_dssp TTSSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHH
Confidence 4566899999988888899999888888876533 488999999996554
No 23
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=22.69 E-value=31 Score=26.70 Aligned_cols=22 Identities=14% Similarity=0.019 Sum_probs=17.9
Q ss_pred eeeeeccCCCcHHhHHHHHHHc
Q psy16318 19 AWRLYDTYGFPVDLTQLMVEEK 40 (474)
Q Consensus 19 aF~LydTyGfP~dlt~~ia~e~ 40 (474)
.-.++|.||||.|++.+.++.-
T Consensus 26 i~~w~~~~~~~~elI~~A~~~a 47 (78)
T 2zc2_A 26 LQKTVSDDKTDPDLVRSALREA 47 (78)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 4568999999999998877653
Done!