RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16318
(474 letters)
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 129
Score = 49.0 bits (116), Expect = 6e-08
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 423 DTARRRPIMSNHTATHILNHALRFVLGPEA-DQKGSLVYRYHLH 465
D R +M HT H+L H L VLG GS +
Sbjct: 1 DWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGR 44
Score = 39.0 bits (90), Expect = 2e-04
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 69 SVEFCGGTHLAMAHHVGDFCISSEEAIAKG 98
V CGGTH+ +G +I +G
Sbjct: 91 EVIPCGGTHVKDIKEIGHIKKLKRSSIGRG 120
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 87
Score = 47.2 bits (112), Expect = 1e-07
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 283 YNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSG 332
Y K+ V + ILLD++ FY GGQ +D G ++ + +D
Sbjct: 14 YLKEAKGRVLEIRDNAILLDQTIFYPTGGGQPHDRGTINGVEVLDVYKDE 63
Score = 46.4 bits (110), Expect = 2e-07
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 231 SYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDEGTV 278
+Y K+ V + ILLD++ FY GGQ +D G + GV
Sbjct: 13 AYLKEAKGRVLEIRDNAILLDQTIFYPTGGGQPHDRGTINGVEVLDVY 60
Score = 43.3 bits (102), Expect = 3e-06
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 323 KQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVN 362
K+ V + ILLD++ FY GGQ +D G + GV
Sbjct: 16 KEAKGRVLEIRDNAILLDQTIFYPTGGGQPHDRGTINGVE 55
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 151
Score = 45.3 bits (106), Expect = 2e-06
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 431 MSNHTATHILNHALRFVLGPEADQKGSLV-----YRYHLHENIMECEEE 474
+ H+A H++ A+ VLG EA S + + +EE
Sbjct: 6 VRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEE 54
Score = 29.1 bits (64), Expect = 0.65
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 67 ETSVEFCGGTHLAMAHHVGDFCI-SSEEAIAKGSNIVSY 104
+ +V C H +G I +KG + +
Sbjct: 110 DWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHF 148
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of
alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId:
63363]}
Length = 221
Score = 37.5 bits (86), Expect = 0.002
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 1 MLQTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQ 57
+ A K L G + YDTYGFPVDL + EKGL +D+E ++ ++ +
Sbjct: 129 EVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQR 185
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Staphylococcus aureus
[TaxId: 1280]}
Length = 179
Score = 34.3 bits (78), Expect = 0.016
Identities = 5/47 (10%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 422 IDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENI 468
+ ++ H+ H++ HA++ + V + +
Sbjct: 2 PGSEEALEVL-RHSTAHLMAHAIKRLY-GNVKFGVGPVIEGGFYYDF 46
>d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 99
Score = 32.0 bits (73), Expect = 0.034
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 243 GTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLD 302
GT AG + + ++ +G ++ EG + L+ K V V+ G E G+ +
Sbjct: 21 GTIAGCYVTDGKITRDSKVRLIRQGIVVY---EGEIDSLKRYKDDVREVAQGYECGLTIK 77
Query: 303 KSN 305
N
Sbjct: 78 NFN 80
Score = 26.2 bits (58), Expect = 3.2
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 298 GILLDKSNFYAEQGGQIYDEG----FMSNKQFVDSVSSGTEAGILLDKSN 343
G + S + G + EG K V V+ G E G+ + N
Sbjct: 31 GKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKNFN 80
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Escherichia coli [TaxId:
562]}
Length = 162
Score = 32.9 bits (74), Expect = 0.040
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 433 NHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIM 469
H+ H+L HA++ L P V + ++
Sbjct: 10 RHSCAHLLGHAIKQ-LWPHTKMAIGPVIDNGFYYDVD 45
>d1xlya_ a.232.1.1 (A:) RNA-binding protein She2p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 232
Score = 29.5 bits (66), Expect = 0.75
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 3 QTIAK-LGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLS---VDMEVYEDAKKKAQS 58
+ ++K L E L + + DTY V +Q M+E + +D+EV + A K A
Sbjct: 119 EILSKTLNEDLTLTAESILAIDDTYNHFVKFSQWMIESLRIGSNLLDLEVVQFAIKSADE 178
Query: 59 E 59
+
Sbjct: 179 D 179
>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 223
Score = 26.5 bits (57), Expect = 6.4
Identities = 17/110 (15%), Positives = 26/110 (23%), Gaps = 6/110 (5%)
Query: 63 QAGMETSVEFCGGTHLAM------AHHVGDFCISSEEAIAKGSNIVSYCGSKGTFQSHSG 116
Q + + FCGG+ + AH +
Sbjct: 15 QVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIKHP 74
Query: 117 SINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWT 166
+ + E N L +L V V S + G G T
Sbjct: 75 NFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNT 124
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.396
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,683,061
Number of extensions: 76183
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 15
Length of query: 474
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 385
Effective length of database: 1,185,626
Effective search space: 456466010
Effective search space used: 456466010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.5 bits)