BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16319
(246 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03755|CUT1_CAEEL Cuticlin-1 OS=Caenorhabditis elegans GN=cut-1 PE=2 SV=2
Length = 424
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 22/210 (10%)
Query: 46 IDCRSGDMVARIKTNKLFDGKIYAKG--SPNSCVQDIKGSLDFELEMAFDDVECNVKHQG 103
++C + T F+G +Y KG C D G +E+ FD CN
Sbjct: 31 VECGPNSITVNFNTRNPFEGHVYVKGLYDQAGCRSDEGGRQVAGIELPFDS--CNTART- 87
Query: 104 LGRYMN--------DVVIQHHDTIITSSDLGLAVTCQYDLTNKTVSNEVDLGVQGDVKSA 155
R +N VVI H +T D + C Y ++KTVS ++++ D+ +A
Sbjct: 88 --RSLNPKGVFVSTTVVISFHPQFVTKVDRAYRIQCFYMESDKTVSTQIEV---SDLTTA 142
Query: 156 LTEEVVVDSPNVAMKITDRSGADVKP--SAEVGDPLALRFEILDPNSPYEIFVRELVAMD 213
+ VV P +I D G +P A +G + ++ + V +D
Sbjct: 143 FQTQ-VVPMPVCKYEILD-GGPSGQPIQFATIGQQVYHKWTCDSETTDTFCAVVHSCTVD 200
Query: 214 GVDSSEIVLIDSNGCPTDHFIMGPLYKAAD 243
+ + +++ GC D F++ L D
Sbjct: 201 DGNGDTVQILNEEGCALDKFLLNNLEYPTD 230
>sp|A5IL67|SYE1_THEP1 Glutamate--tRNA ligase 1 OS=Thermotoga petrophila (strain RKU-1 /
ATCC BAA-488 / DSM 13995) GN=gltX1 PE=3 SV=1
Length = 464
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 184 EVGDPLALRFEILDPNSPYEIFVRELVAMDGVDSSEIVLIDSNGCPTDHF 233
E G P+ ++F++L + +E ++ + D + +++ SNG PT +F
Sbjct: 128 EKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNF 177
>sp|B1LAE7|SYE1_THESQ Glutamate--tRNA ligase 1 OS=Thermotoga sp. (strain RQ2) GN=gltX1
PE=3 SV=1
Length = 464
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 184 EVGDPLALRFEILDPNSPYEIFVRELVAMDGVDSSEIVLIDSNGCPTDHF 233
E G P+ ++F++L + +E ++ + D + +++ SNG PT +F
Sbjct: 128 EKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNF 177
>sp|Q9X2I8|SYE2_THEMA Glutamate--tRNA ligase 2 OS=Thermotoga maritima (strain ATCC 43589
/ MSB8 / DSM 3109 / JCM 10099) GN=gltX2 PE=1 SV=1
Length = 487
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 184 EVGDPLALRFEILDPNSPYEIFVRELVAMDGVDSSEIVLIDSNGCPTDHF 233
E G P+ ++F++L + +E ++ + D + +++ SNG PT +F
Sbjct: 151 EKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNF 200
>sp|P79762|ZP3_CHICK Zona pellucida sperm-binding protein 3 OS=Gallus gallus GN=ZP3 PE=1
SV=4
Length = 437
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 93/240 (38%), Gaps = 27/240 (11%)
Query: 12 TLFDLASSCSSLQDPYLDVAEAQTYELSACYNVSIDCRSGDMVARIKTNKLFDGKIYAKG 71
T +D++ + + AEA + ++ + V++ C+ +V + + G++
Sbjct: 22 TPWDISWAARGDPSAWSWGAEAHSRAVAGSHPVAVQCQEAQLVVTVHRDLFGTGRLINAA 81
Query: 72 ----SPNSCVQDIKGSLDFELEMAFDDVECN---------VKHQGLGRYMNDVVIQHHDT 118
P +C + + A EC + ++ L Y D +
Sbjct: 82 DLTLGPAACKHSSLNAAHNTVTFAAGLHECGSVVQVTPDTLIYRTLINY--DPSPASNPV 139
Query: 119 IITSSDLGLAVTCQYDLTNKTVSNEVDLGVQGDVKSALT-EEVVVDSPNVAMKITDRSGA 177
II ++ + + C Y SN + SAL+ EE +V S +++ +
Sbjct: 140 IIRTNPAVIPIECHYPRRENVSSNAIR-PTWSPFNSALSAEERLVFS----LRLMSDDWS 194
Query: 178 DVKP--SAEVGDPLALRFEILDPNS-PYEIFVRELVAM---DGVDSSEIVLIDSNGCPTD 231
+P ++GD L ++ E+ N P +FV VA DG S +ID NGC D
Sbjct: 195 TERPFTGFQLGDILNIQAEVSTENHVPLRLFVDSCVAALSPDGDSSPHYAIIDFNGCLVD 254
>sp|Q9PJU7|SYE_CHLMU Glutamate--tRNA ligase OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=gltX PE=3 SV=1
Length = 506
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 175 SGADVKPSAEVGDPLALRFEI-LDPNSPYEIFVRELVAMDGVDSSEIVLIDSNGCPTDHF 233
S +V+ E G P +R ++ L S +E + V D + VL+ S+G PT HF
Sbjct: 140 SAEEVRQREEQGQPYTIRLKVPLTGESVFEDQCKGRVVFPWADVDDQVLVKSDGFPTYHF 199
>sp|Q1WV66|ARLY_LACS1 Argininosuccinate lyase OS=Lactobacillus salivarius (strain UCC118)
GN=argH PE=3 SV=1
Length = 460
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 61 KLFDGKIYAKGSPNSCVQDIKGSLDFELEMAFDDVECNVKHQGLGRYMNDVVIQHHDTII 120
K++ G+ + +GS + V + S+ F+ MA++D+E ++ H + ++ N + D II
Sbjct: 5 KMWGGR-FQEGS-SKLVDEFGASISFDKHMAYEDLEGSLAHVKMLKHTNILSADDADKII 62
Query: 121 TSSDLGLAVTCQYDLTNKTVSNEVDLG-VQGDVKSALTEEV 160
GL + Q L N ++ +L + +++S LT+E+
Sbjct: 63 A----GLHI-LQDKLANGELTFSTELEDIHMNIESLLTQEI 98
>sp|A4G895|PGK_HERAR Phosphoglycerate kinase OS=Herminiimonas arsenicoxydans GN=pgk PE=3
SV=1
Length = 397
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Query: 131 CQYDLTNKTVSNEVDLGVQGDVKSALTEEVVVDSPNVAMKITDRSGADVKPSAEVGDPLA 190
+ +L K V DL V D K +TE+ + + A++ ++GA V ++ +G P+
Sbjct: 11 ARNELKGKRVFIRADLNVPQDGKGNITEDTRIRASVPAIRQALQAGAAVMVTSHLGRPVE 70
Query: 191 LRFEILDPNSPYEIFVRELVA---------MDGVDSS--EIVLIDS 225
F+ D +P + EL+ +DGVD + ++VL+++
Sbjct: 71 GEFKPADTLAPIAQRLSELLGQPVALKQDWVDGVDVAPGQVVLLEN 116
>sp|Q8TU06|MTRH_METAC Tetrahydromethanopterin S-methyltransferase subunit H
OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM
2834 / JCM 12185 / C2A) GN=mtrH PE=3 SV=1
Length = 316
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 96 ECNVKHQGLGRYMNDVVIQHHDTIITSSDLGLAVTCQYDLTNKTVSNEVDL---GVQGDV 152
E V ++ + +N + Q I+T SD+ A+ ++ T+ TV ++D+ G G
Sbjct: 119 EIGVANRAIHNSINASIEQSEIDILTESDVEAAIVLAFNATDPTVKGKLDILEVGGSGQT 178
Query: 153 KSAL--TEEVVVDSPNV---AMKITDRSGADVKPSAEVGDPLAL 191
K L EE + P + AM + SGA ++ + L L
Sbjct: 179 KGMLQVAEECGIKIPLIDVAAMPLGAGSGATIRSIPTIKGKLGL 222
>sp|Q3ATL0|SYE_CHLCH Glutamate--tRNA ligase OS=Chlorobium chlorochromatii (strain CaD3)
GN=gltX PE=3 SV=1
Length = 502
Score = 31.2 bits (69), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 179 VKPSAEVGDPLALRFEILDPNS-PYEIFVRELVAMDGVDSSEIVLIDSNGCPTDHF 233
++ E G+P +R ++ D S +E +R + D + VL+ S+G PT HF
Sbjct: 150 IRQKLEAGEPYVIRMKVPDYISVWFEDIIRGPIEFDSATIDDQVLMKSDGFPTYHF 205
>sp|B0BC83|SYE_CHLTB Glutamate--tRNA ligase OS=Chlamydia trachomatis serovar L2b (strain
UCH-1/proctitis) GN=gltX PE=3 SV=1
Length = 506
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 175 SGADVKPSAEVGDPLALRFEI-LDPNSPYEIFVRELVAMDGVDSSEIVLIDSNGCPTDHF 233
S +V+ E G P +R ++ L S +E + V D + VL+ S+G PT HF
Sbjct: 140 SPEEVRQREEQGQPYTIRLKVPLTGESVFEDQCKGRVVFPWADVDDQVLVKSDGFPTYHF 199
>sp|B0B818|SYE_CHLT2 Glutamate--tRNA ligase OS=Chlamydia trachomatis serovar L2 (strain
434/Bu / ATCC VR-902B) GN=gltX PE=3 SV=1
Length = 506
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 175 SGADVKPSAEVGDPLALRFEI-LDPNSPYEIFVRELVAMDGVDSSEIVLIDSNGCPTDHF 233
S +V+ E G P +R ++ L S +E + V D + VL+ S+G PT HF
Sbjct: 140 SPEEVRQREEQGQPYTIRLKVPLTGESVFEDQCKGRVVFPWADVDDQVLVKSDGFPTYHF 199
>sp|O84451|SYE_CHLTR Glutamate--tRNA ligase OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=gltX PE=3 SV=1
Length = 506
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 175 SGADVKPSAEVGDPLALRFEI-LDPNSPYEIFVRELVAMDGVDSSEIVLIDSNGCPTDHF 233
S +V+ E G P +R ++ L S +E + V D + VL+ S+G PT HF
Sbjct: 140 SPEEVRQREEQGQPYTIRLKVPLTGESVFEDQCKGCVVFPWADVDDQVLVKSDGFPTYHF 199
>sp|Q3KLQ4|SYE_CHLTA Glutamate--tRNA ligase OS=Chlamydia trachomatis serovar A (strain
HAR-13 / ATCC VR-571B) GN=gltX PE=3 SV=1
Length = 506
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 175 SGADVKPSAEVGDPLALRFEI-LDPNSPYEIFVRELVAMDGVDSSEIVLIDSNGCPTDHF 233
S +V+ E G P +R ++ L S +E + V D + VL+ S+G PT HF
Sbjct: 140 SPEEVRQREEQGQPYTIRLKVPLTGESVFEDQCKGCVVFPWADVDDQVLVKSDGFPTYHF 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,598,916
Number of Sequences: 539616
Number of extensions: 3634652
Number of successful extensions: 8642
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 8632
Number of HSP's gapped (non-prelim): 28
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)