Query psy16319
Match_columns 246
No_of_seqs 109 out of 385
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 18:19:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nk4_A ZONA pellucida 3; ferti 99.5 3.3E-12 1.1E-16 113.6 19.7 183 44-235 4-208 (297)
2 3qw9_A Transforming growth fac 97.5 0.00023 7.9E-09 58.3 6.9 54 181-235 25-81 (176)
3 2r5o_A Putative ATP binding co 24.1 80 0.0027 24.8 4.2 30 167-197 51-80 (188)
4 1iq6_A (R)-hydratase, (R)-spec 20.1 1.6E+02 0.0053 20.9 4.9 36 181-216 86-121 (134)
5 2jro_A Uncharacterized protein 16.0 55 0.0019 22.7 1.3 11 62-72 19-29 (78)
6 1bx7_A Hirustasin; anti-coagul 13.5 58 0.002 20.9 0.8 9 222-230 38-46 (55)
7 2rky_B Fibronectin-binding pro 13.1 47 0.0016 18.0 0.2 10 237-246 12-21 (26)
8 1z6b_A Pffabz, fatty acid synt 12.8 1.8E+02 0.006 21.7 3.6 33 181-213 105-137 (154)
9 2l55_A SILB,silver efflux prot 12.0 3.4E+02 0.012 18.4 4.5 33 163-196 29-61 (82)
10 3c12_A FLGD, flagellar protein 10.9 1.5E+02 0.0052 22.1 2.6 33 164-197 38-74 (138)
No 1
>3nk4_A ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_A*
Probab=99.48 E-value=3.3e-12 Score=113.56 Aligned_cols=183 Identities=16% Similarity=0.272 Sum_probs=118.5
Q ss_pred EEEEEcCCcEEEEEEcCCCcee------EEEEcCCCCCceeeccC--CeEEEEEeecCCCccccee--cCc-eEEEEEEE
Q psy16319 44 VSIDCRSGDMVARIKTNKLFDG------KIYAKGSPNSCVQDIKG--SLDFELEMAFDDVECNVKH--QGL-GRYMNDVV 112 (246)
Q Consensus 44 v~v~C~~~~i~v~v~t~~pF~G------~Iyvkg~~~~C~~~~~~--s~~~~i~i~~~~~~CG~~~--~~~-~~~s~~vv 112 (246)
|.|+|..+.|.|.|.-.---.| .++..+ ..|+....+ ...+.+.+|+. .||+.. .+. ..|+|.|+
T Consensus 4 V~V~C~~~~m~V~V~k~~l~~~~~i~~~~L~L~d--~~C~~~~~~~~~~~~~f~~~l~--~CGT~~~~~~~~iiY~N~l~ 79 (297)
T 3nk4_A 4 VAVQCQEAQLVVTVHRDLFGTGRLINAADLTLGP--AACKHSSLNAAHNTVTFAAGLH--ECGSVVQVTPDTLIYRTLIN 79 (297)
T ss_dssp EEEEECSSEEEEEEESCCSCSSCCCCGGGEEETT--TTBCCSEEETTTTEEEEEEETT--CTTCEEEECSSEEEEEEEEE
T ss_pred EEEEeCCCEEEEEEEHHHhCCCCccccceeEECC--CCCCCeeeCCCCcEEEEEecCC--CCCceeEecCCEEEEEEEEE
Confidence 6899999999999987432222 244432 389987653 46777777876 999975 333 35899999
Q ss_pred EEecC----ceeeecceEEEEEeEecCCCceEEeeEEecccCCccccceeeee-ecCCceEEEEEcCCC--CCccceeee
Q psy16319 113 IQHHD----TIITSSDLGLAVTCQYDLTNKTVSNEVDLGVQGDVKSALTEEVV-VDSPNVAMKITDRSG--ADVKPSAEV 185 (246)
Q Consensus 113 Vq~hp----~~~T~~Dr~~~V~C~y~~~~~~v~~~~~v~~~~~~~~~l~~~~~-~~~P~c~m~I~~~~g--~~~~~~~~v 185 (246)
....| .|.....-.+.++|.|.... .++... +.. ...+ +..... ...-..+|++...+. +.....+.+
T Consensus 80 ~~~~~~~~~~ItR~~~~~l~~~C~Y~~~~-~vs~~~-~~p--~~~~-~~~~~~~~g~~~~~m~l~~d~~~~~~~~~~~~l 154 (297)
T 3nk4_A 80 YDPSPASNPVIIRTNPAVIPIECHYPRRE-QVSSNA-IRP--TWSP-FNSALSAEERLVFSLRLMSDDWSTERPFTGFQL 154 (297)
T ss_dssp ECCCCCSSTTEESSCCEEEEEEEEEEC------------C--CBCT-TC------CCCCEEEEEECTTSSSBCCSCCBCT
T ss_pred EeccCCCCCceEecccEEEEEEEEEcCCC-cccccc-CcC--cccc-cccccccccceEEEEEeccCCCcccccCCcccC
Confidence 87543 36666788899999998764 222110 110 0001 110000 112367899886532 111234689
Q ss_pred CCeEEEEEEEeCC-CCCccEEEeEEEEEcC---CCCceEEEEcCCCCCCCcccc
Q psy16319 186 GDPLALRFEILDP-NSPYEIFVRELVAMDG---VDSSEIVLIDSNGCPTDHFIM 235 (246)
Q Consensus 186 Gd~l~~~~~~~~~-~~~~~~~V~~C~A~d~---~~~~~~~LID~~GC~~d~~i~ 235 (246)
||+|++++++... ...+.++|++|||... .+..++.|||.+|||.|..+.
T Consensus 155 ~~~lyvev~v~~~~~~~l~l~l~~C~ATps~~~~~~~~y~lI~~~GC~~d~~~~ 208 (297)
T 3nk4_A 155 GDILNIQAEVSTENHVPLRLFVDSCVAALSPDGDSSPHYAIIDFNGCLVDGRVD 208 (297)
T ss_dssp TCEEEEEEEECCTTBCCEEEEEEEEEEESSSCTTSSSEEEEEBTTTEEGGGGST
T ss_pred CCEEEEEEEEecCCCCCEEEEEeeEEEeCCCCccCCceEEEEccCCCCcCCccc
Confidence 9999999999754 3689999999999864 334789999889999998765
No 2
>3qw9_A Transforming growth factor beta receptor type 3; cytokine receptor, immunoglobulin domain, ZONA pellucida, TG ligand CO-receptor; HET: NAG BMA FUC MAN; 2.00A {Rattus norvegicus}
Probab=97.47 E-value=0.00023 Score=58.31 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=43.9
Q ss_pred ceeeeCCeEEEEEEEeCCCCCccEEEeEEEEEcCC---CCceEEEEcCCCCCCCcccc
Q psy16319 181 PSAEVGDPLALRFEILDPNSPYEIFVRELVAMDGV---DSSEIVLIDSNGCPTDHFIM 235 (246)
Q Consensus 181 ~~~~vGd~l~~~~~~~~~~~~~~~~V~~C~A~d~~---~~~~~~LID~~GC~~d~~i~ 235 (246)
..+.+||+|++++++...+..+.+++.+|||.... ...++.||+ +|||.|..+-
T Consensus 25 ~~v~l~~~lyvev~l~~~d~~l~l~ld~CwATps~d~~~~~~y~lI~-nGC~~D~t~~ 81 (176)
T 3qw9_A 25 FSVAENEHVYVEVSVTKADQDLGFAIQTCFLSPYSNPDRMSDYTIIE-NICPKDDSVK 81 (176)
T ss_dssp EEECTTCEEEEEEEEEESCTTEEEEEEEEEEESCSCTTSCCSCEEEE-TTEECSTTCE
T ss_pred ceEecCCEEEEEEEeccCCCceEEEEeeEEeecCCCccCCccEEEEE-CCccCCCCEE
Confidence 36789999999999876667799999999997642 346789995 7999997653
No 3
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=24.13 E-value=80 Score=24.85 Aligned_cols=30 Identities=10% Similarity=0.125 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCCccceeeeCCeEEEEEEEeC
Q psy16319 167 VAMKITDRSGADVKPSAEVGDPLALRFEILD 197 (246)
Q Consensus 167 c~m~I~~~~g~~~~~~~~vGd~l~~~~~~~~ 197 (246)
...+|++.+|. +...+..|+++++++++.-
T Consensus 51 ~~v~l~d~~G~-~~~~~~~Ge~v~l~i~~~~ 80 (188)
T 2r5o_A 51 IDYHIQSAGVD-FPPSLTGNQQTDFLMKVVF 80 (188)
T ss_dssp EEEEEEETTEE-SCSSEETTCEEEEEEEEEE
T ss_pred EEEEEEECCCC-EeeEEeCCCEEEEEEEEEE
Confidence 35777888886 5689999999999998864
No 4
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase; polyhydroxyalkanoate, aeromonas caviae, the hydratase 2 motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Probab=20.14 E-value=1.6e+02 Score=20.91 Aligned_cols=36 Identities=14% Similarity=0.029 Sum_probs=24.9
Q ss_pred ceeeeCCeEEEEEEEeCCCCCccEEEeEEEEEcCCC
Q psy16319 181 PSAEVGDPLALRFEILDPNSPYEIFVRELVAMDGVD 216 (246)
Q Consensus 181 ~~~~vGd~l~~~~~~~~~~~~~~~~V~~C~A~d~~~ 216 (246)
..+.+||.|+.+.++.+....-++....+.+.+..|
T Consensus 86 ~Pv~~Gd~l~~~~~v~~~~~~~~~v~~~~~~~n~~g 121 (134)
T 1iq6_A 86 LPVFVGDEVTAEVEVTALREDKPIATLTTRIFTQGG 121 (134)
T ss_dssp SCCBTTCEEEEEEEEEEECSSSSEEEEEEEEECTTS
T ss_pred CCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEeCCC
Confidence 445899999999988653323456667788886543
No 5
>2jro_A Uncharacterized protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Shewanella oneidensis}
Probab=16.05 E-value=55 Score=22.69 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=9.3
Q ss_pred CceeEEEEcCC
Q psy16319 62 LFDGKIYAKGS 72 (246)
Q Consensus 62 pF~G~Iyvkg~ 72 (246)
-|.|+||++|-
T Consensus 19 lF~Gri~I~g~ 29 (78)
T 2jro_A 19 FLTGVIWVKDL 29 (78)
T ss_dssp HCSEEEEETTT
T ss_pred HccceEEEEec
Confidence 37899999985
No 6
>1bx7_A Hirustasin; anti-coagulant, peptidic inhibitors, conformational flexibility, serine protease inhibitor; 1.20A {Hirudo medicinalis} SCOP: g.3.15.1 PDB: 1bx8_A 1hia_I
Probab=13.54 E-value=58 Score=20.88 Aligned_cols=9 Identities=44% Similarity=0.748 Sum_probs=6.9
Q ss_pred EEcCCCCCC
Q psy16319 222 LIDSNGCPT 230 (246)
Q Consensus 222 LID~~GC~~ 230 (246)
-.|+|||.+
T Consensus 38 k~DeNGCe~ 46 (55)
T 1bx7_A 38 KKDENGCEY 46 (55)
T ss_dssp CCCTTSCCC
T ss_pred eECCCCCcc
Confidence 358899986
No 7
>2rky_B Fibronectin-binding protein; 4F15F1, beta zipper, staphylococcus aureus, acute phase, alternative splicing, cell adhesion, extracellular matrix; 1.80A {Homo sapiens}
Probab=13.05 E-value=47 Score=18.02 Aligned_cols=10 Identities=30% Similarity=0.072 Sum_probs=7.4
Q ss_pred CcEEcCCCCC
Q psy16319 237 PLYKAADTGK 246 (246)
Q Consensus 237 ~~~y~~~~~~ 246 (246)
+|+|++++|+
T Consensus 12 ~fef~Edtgt 21 (26)
T 2rky_B 12 KFEYKEDTIK 21 (26)
T ss_dssp ECEEEECCCC
T ss_pred CeeEeecccc
Confidence 5778888775
No 8
>1z6b_A Pffabz, fatty acid synthesis protein; malaria, beta-hydroxyacyl-ACP dehydra fatty acid biosynthesis, SAD phasing, lyase; 2.09A {Plasmodium falciparum} SCOP: d.38.1.6 PDB: 3az8_A* 3az9_A* 3aza_A* 3azb_A* 1zhg_A 2oki_A 2okh_A
Probab=12.85 E-value=1.8e+02 Score=21.68 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=24.4
Q ss_pred ceeeeCCeEEEEEEEeCCCCCccEEEeEEEEEc
Q psy16319 181 PSAEVGDPLALRFEILDPNSPYEIFVRELVAMD 213 (246)
Q Consensus 181 ~~~~vGd~l~~~~~~~~~~~~~~~~V~~C~A~d 213 (246)
..+.+||.|+.++++.......++..-+|.+.-
T Consensus 105 ~pV~pGd~l~~~~~v~~~~~~~g~~~~~~~~~~ 137 (154)
T 1z6b_A 105 KPVLPGDTLTMQANLISFKSSLGIAKLSGVGYV 137 (154)
T ss_dssp SCCCTTCEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred cccCCCCEEEEEEEEEEeeCCceEEEEEEEEEE
Confidence 455789999999998754445677777888863
No 9
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=11.99 E-value=3.4e+02 Score=18.42 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=25.7
Q ss_pred cCCceEEEEEcCCCCCccceeeeCCeEEEEEEEe
Q psy16319 163 DSPNVAMKITDRSGADVKPSAEVGDPLALRFEIL 196 (246)
Q Consensus 163 ~~P~c~m~I~~~~g~~~~~~~~vGd~l~~~~~~~ 196 (246)
..|.-+|...-.+.. ....++.||.+.++++-.
T Consensus 29 ~wPaMTM~F~v~~~~-~l~~lk~Gd~V~F~~~~~ 61 (82)
T 2l55_A 29 QWGAMTMEFAAPPAG-LPQGLKAGDRVAFSFRLD 61 (82)
T ss_dssp TCCCEEEEEECCTTC-CCSSCSTTCEEEEEEEEE
T ss_pred CCCceEEEEEcCChh-HhhcCCCCCEEEEEEEEC
Confidence 467888888755554 357899999999999864
No 10
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=10.85 E-value=1.5e+02 Score=22.06 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCCccceeeeCC----eEEEEEEEeC
Q psy16319 164 SPNVAMKITDRSGADVKPSAEVGD----PLALRFEILD 197 (246)
Q Consensus 164 ~P~c~m~I~~~~g~~~~~~~~vGd----~l~~~~~~~~ 197 (246)
...+.++|.+.+|+ +++++.+|. ...+.|.-.+
T Consensus 38 a~~v~v~I~d~~G~-~V~t~~~~~~~aG~~~~~WDg~d 74 (138)
T 3c12_A 38 AGFVNFEITDANGT-FVKQLSVPASAAGEVSFAWDGTD 74 (138)
T ss_dssp SEEEEEEEECSSCC-EEEEEEEEESSSEEEEEEECSBC
T ss_pred CCEEEEEEEeCCCC-EEEEEEcCCcCCceEEEEECCcC
Confidence 34688899998887 567766542 2466675433
Done!