Query psy16319
Match_columns 246
No_of_seqs 109 out of 385
Neff 7.2
Searched_HMMs 13730
Date Fri Aug 16 18:19:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16319.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16319hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rutx3 g.39.1.3 (X:83-113) LI 32.2 2.9 0.00021 22.6 -0.8 20 113-132 12-31 (31)
2 d1iq6a_ d.38.1.4 (A:) (R)-spec 21.2 67 0.0049 21.6 4.9 36 181-216 84-119 (132)
3 d1p5dx2 c.84.1.1 (X:155-258) P 20.8 32 0.0023 22.8 2.9 19 209-228 84-102 (104)
4 d1cvra1 b.1.18.12 (A:351-432) 17.4 35 0.0025 21.5 2.1 26 117-142 9-34 (82)
5 d1oqek_ g.24.1.2 (K:) Tumor ne 13.4 9.2 0.00067 19.9 -1.3 13 200-212 8-20 (31)
6 d1z6ba1 d.38.1.6 (A:84-229) (3 11.4 98 0.0072 21.3 3.6 35 180-214 97-131 (146)
7 d3pmga2 c.84.1.1 (A:191-303) P 11.0 47 0.0034 22.2 1.5 18 209-227 93-110 (113)
8 d1ex0a3 b.1.5.1 (A:628-727) Tr 10.9 1.3E+02 0.0092 19.7 3.8 27 182-211 12-38 (100)
9 d1x61a1 g.39.1.3 (A:8-34) Thyr 10.2 9.8 0.00072 19.0 -1.8 11 122-132 17-27 (27)
10 d2cfua1 d.106.1.3 (A:530-655) 9.0 66 0.0048 21.6 1.7 28 185-212 28-55 (126)
No 1
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.19 E-value=2.9 Score=22.59 Aligned_cols=20 Identities=10% Similarity=0.247 Sum_probs=15.4
Q ss_pred EEecCceeeecceEEEEEeE
Q psy16319 113 IQHHDTIITSSDLGLAVTCQ 132 (246)
Q Consensus 113 Vq~hp~~~T~~Dr~~~V~C~ 132 (246)
|..+.+++...|..|++.|+
T Consensus 12 I~~~e~VmRA~~~VyHl~CF 31 (31)
T d1rutx3 12 IPASELVMRAQGNVYHLKCF 31 (31)
T ss_dssp ECTTSEEEEETTEEECGGGC
T ss_pred CChhHhheecccceeeeccC
Confidence 34456788889999998885
No 2
>d1iq6a_ d.38.1.4 (A:) (R)-specific enoyl-CoA hydratase {Aeromonas caviae [TaxId: 648]}
Probab=21.17 E-value=67 Score=21.57 Aligned_cols=36 Identities=14% Similarity=0.029 Sum_probs=27.1
Q ss_pred ceeeeCCeEEEEEEEeCCCCCccEEEeEEEEEcCCC
Q psy16319 181 PSAEVGDPLALRFEILDPNSPYEIFVRELVAMDGVD 216 (246)
Q Consensus 181 ~~~~vGd~l~~~~~~~~~~~~~~~~V~~C~A~d~~~ 216 (246)
..+.+||.|+.+.++.+....-++-..++.+.+..|
T Consensus 84 ~Pv~~GDtl~~~~~v~~~~~~~~~v~~~~~~~nq~g 119 (132)
T d1iq6a_ 84 LPVFVGDEVTAEVEVTALREDKPIATLTTRIFTQGG 119 (132)
T ss_dssp SCCBTTCEEEEEEEEEEECSSSSEEEEEEEEECTTS
T ss_pred ccCCCcCEEEEEEEEEEEEcCCCEEEEEEEEEECCC
Confidence 346889999999998765455567778888887654
No 3
>d1p5dx2 c.84.1.1 (X:155-258) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.79 E-value=32 Score=22.83 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=15.9
Q ss_pred EEEEcCCCCceEEEEcCCCC
Q psy16319 209 LVAMDGVDSSEIVLIDSNGC 228 (246)
Q Consensus 209 C~A~d~~~~~~~~LID~~GC 228 (246)
.+|.||++ .++.++|++|-
T Consensus 84 Gia~DgDa-DR~~~vd~~G~ 102 (104)
T d1p5dx2 84 GLAFDGDG-DRVGVVTNTGT 102 (104)
T ss_dssp EEEECTTS-SBEEEEETTCC
T ss_pred EEEEcCCC-CEEEEECCCCC
Confidence 67999987 47889999984
No 4
>d1cvra1 b.1.18.12 (A:351-432) Gingipain R (RgpB), C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=17.45 E-value=35 Score=21.53 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=20.0
Q ss_pred CceeeecceEEEEEeEecCCCceEEe
Q psy16319 117 DTIITSSDLGLAVTCQYDLTNKTVSN 142 (246)
Q Consensus 117 p~~~T~~Dr~~~V~C~y~~~~~~v~~ 142 (246)
|--+...|+.|.|.|.|...-.+++.
T Consensus 9 pa~i~~s~~s~~v~cdyngaiat~s~ 34 (82)
T d1cvra1 9 PANISASAQTFEVACDYNGAIATLSD 34 (82)
T ss_dssp CSEECTTCSEEEEEESSTTCEEEEEE
T ss_pred cceeccccceEEEEeccCceEEEEec
Confidence 55567789999999999887655543
No 5
>d1oqek_ g.24.1.2 (K:) Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.45 E-value=9.2 Score=19.92 Aligned_cols=13 Identities=31% Similarity=0.554 Sum_probs=10.1
Q ss_pred CCccEEEeEEEEE
Q psy16319 200 SPYEIFVRELVAM 212 (246)
Q Consensus 200 ~~~~~~V~~C~A~ 212 (246)
.-|+.+|++|+|-
T Consensus 8 ecfd~lvr~cvac 20 (31)
T d1oqek_ 8 ECFDLLVRHCVAC 20 (31)
T ss_dssp EEEETTTTEEEEG
T ss_pred HHhcHHHHHhhhh
Confidence 3477889999984
No 6
>d1z6ba1 d.38.1.6 (A:84-229) (3R)-hydroxymyristoyl ACP dehydrase FabZ {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=11.43 E-value=98 Score=21.33 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=25.9
Q ss_pred cceeeeCCeEEEEEEEeCCCCCccEEEeEEEEEcC
Q psy16319 180 KPSAEVGDPLALRFEILDPNSPYEIFVRELVAMDG 214 (246)
Q Consensus 180 ~~~~~vGd~l~~~~~~~~~~~~~~~~V~~C~A~d~ 214 (246)
-+.|..||.|.++.++..-...+++.--+|.|.-+
T Consensus 97 ~~~v~PGd~l~i~~~i~~~~~~~~i~~~~~~a~v~ 131 (146)
T d1z6ba1 97 KKPVLPGDTLTMQANLISFKSSLGIAKLSGVGYVN 131 (146)
T ss_dssp CSCCCTTCEEEEEEEEEEEETTTTEEEEEEEEEET
T ss_pred eceEecCCEEEEEEEEEEEecCccEEEEEEEEEEC
Confidence 35668899999999875434567777788888754
No 7
>d3pmga2 c.84.1.1 (A:191-303) Phosphoglucomutase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=11.03 E-value=47 Score=22.25 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.1
Q ss_pred EEEEcCCCCceEEEEcCCC
Q psy16319 209 LVAMDGVDSSEIVLIDSNG 227 (246)
Q Consensus 209 C~A~d~~~~~~~~LID~~G 227 (246)
.+|.||+++ ++-++|++|
T Consensus 93 gia~DgDaD-R~~~vd~~G 110 (113)
T d3pmga2 93 GAAFDGDGD-RNMILGKHG 110 (113)
T ss_dssp EEEECTTSS-CEEEEEGGG
T ss_pred EEEEcCCCc-eEEEECCCc
Confidence 679999875 788899987
No 8
>d1ex0a3 b.1.5.1 (A:628-727) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
Probab=10.93 E-value=1.3e+02 Score=19.75 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=19.5
Q ss_pred eeeeCCeEEEEEEEeCCCCCccEEEeEEEE
Q psy16319 182 SAEVGDPLALRFEILDPNSPYEIFVRELVA 211 (246)
Q Consensus 182 ~~~vGd~l~~~~~~~~~~~~~~~~V~~C~A 211 (246)
.+.+|++++..++.. ++...-+++|.-
T Consensus 12 ~~~v~~~~~v~v~F~---NPL~~~L~nc~~ 38 (100)
T d1ex0a3 12 TQVVGSDMTVTVQFT---NPLKETLRNVWV 38 (100)
T ss_dssp CCBTTSCEEEEEEEE---CCSSSCEEEEEE
T ss_pred CcccCCeEEEEEEEE---CCCCCchhCEEE
Confidence 446888888888875 346677778876
No 9
>d1x61a1 g.39.1.3 (A:8-34) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.17 E-value=9.8 Score=19.04 Aligned_cols=11 Identities=27% Similarity=0.323 Sum_probs=7.0
Q ss_pred ecceEEEEEeE
Q psy16319 122 SSDLGLAVTCQ 132 (246)
Q Consensus 122 ~~Dr~~~V~C~ 132 (246)
.-||.|+|.|+
T Consensus 17 aldrvfhvgcf 27 (27)
T d1x61a1 17 ALDRVFHVGCF 27 (27)
T ss_dssp CSSSEECTTTC
T ss_pred EEeeeEEeccC
Confidence 45677777664
No 10
>d2cfua1 d.106.1.3 (A:530-655) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.97 E-value=66 Score=21.57 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=21.6
Q ss_pred eCCeEEEEEEEeCCCCCccEEEeEEEEE
Q psy16319 185 VGDPLALRFEILDPNSPYEIFVRELVAM 212 (246)
Q Consensus 185 vGd~l~~~~~~~~~~~~~~~~V~~C~A~ 212 (246)
-|..+.+.|.+.+....|.+.|+++++.
T Consensus 28 ~~~~~~i~~~~tD~~e~~~l~l~ngvl~ 55 (126)
T d2cfua1 28 EGKALSINLRLPDIGENYLLELKNSHLN 55 (126)
T ss_dssp TTCCEEEEEEETTTTEEEEEEEETTEEE
T ss_pred CCCceEEEEEEcCCCCeEEEEEeCCcee
Confidence 4677888888876666799999888763
Done!