RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16319
(246 letters)
>gnl|CDD|215716 pfam00100, Zona_pellucida, Zona pellucida-like domain.
Length = 252
Score = 76.8 bits (189), Expect = 7e-17
Identities = 49/210 (23%), Positives = 69/210 (32%), Gaps = 23/210 (10%)
Query: 48 CRSGDMVARIKTNKLFDGKIYAKG---SPNSCVQDIKGSLDFELEMAFDDVECNVKHQGL 104
C M + + F +Y SC S C Q
Sbjct: 2 CTEDTMTVVVSKDLTFTPGLYLSSLHLGDPSCRPVETNSTHAIFRFPLSS--CGTTRQRT 59
Query: 105 G---RYMNDVVIQ----HHDTIITSSDLGLAVTCQYDLTNKTVSNEVDLGVQGDVKSALT 157
G Y N++V Q I SD L V+C Y + +VS+ V V
Sbjct: 60 GDGIVYENEIVSQPSVSVGPPITRDSDRRLPVSCSYTSRSVSVSSVA---VLPTVPPVSP 116
Query: 158 EEVVVDSPNVAMKI-TDRSGADVKP-SAEVGDPLALRFEILDPNS--PYEIFVRELVAMD 213
S ++++ TD S P + E+GDPL + + P +F+ A
Sbjct: 117 SPSGEGSLTFSLRLYTDDSYTSDYPVTIELGDPLYVEATVSVLPRSDPLVLFLDSCWATP 176
Query: 214 GVD---SSEIVLIDSNGCPTDHFIMGPLYK 240
G D S LI+ NGCP D L
Sbjct: 177 GPDPDSSPRYDLIE-NGCPVDGDSTSTLSH 205
>gnl|CDD|214579 smart00241, ZP, Zona pellucida (ZP) domain. ZP proteins are
responsible for sperm-adhesion fo the zona pellucida. ZP
domains are also present in multidomain transmembrane
proteins such as glycoprotein GP2, uromodulin and
TGF-beta receptor type III (betaglycan).
Length = 252
Score = 74.3 bits (183), Expect = 6e-16
Identities = 46/208 (22%), Positives = 66/208 (31%), Gaps = 30/208 (14%)
Query: 48 CRSGDMVARIKTNKLFDGKIYAKG---SPNSCVQDIKGSLDFELEMAFDDVECNVKHQGL 104
C MV + T+ LF G I KG SC + + C + Q
Sbjct: 2 CGEDQMVVSVSTDLLFPGGINVKGLTLGDPSCRPQFTDATSAFVSFEVPLNGCGTRRQVN 61
Query: 105 GR---YMNDVVIQ-HHDTIITSSD-LGLAVTCQYDLTNKTVSNEVDLGVQGDVKSALTEE 159
Y N +V+ H IT D C Y K N DV + E
Sbjct: 62 PDGIVYSNTLVVSPFHPGFITRDDRAAYHFQCFYPENEKVSLN-------LDVSTIPPTE 114
Query: 160 VVVDS---PNVAMKITDRSGADVKP-----SAEVGDPLALRFEILDPNSP-YEIFVRELV 210
+ S + ++ +GDP+ +E + P + V
Sbjct: 115 LSSVSEGPLTCSYRL--YKDDSFGSPYQSADYVLGDPVYHEWECDGADDPPLGLLVDNCY 172
Query: 211 AMDGVDSSEIV---LIDSNGCPTDHFIM 235
A G D S +ID NGCP D ++
Sbjct: 173 ATPGPDPSSGPKYFIID-NGCPVDGYLD 199
>gnl|CDD|222130 pfam13439, Glyco_transf_4, Glycosyltransferase Family 4.
Length = 171
Score = 30.9 bits (70), Expect = 0.43
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 199 NSPYEIFVRELVAMDGVDSSEIVLIDSNGCPTDHF 233
S V + +A GV +I +I NG T+ F
Sbjct: 140 VSEE---VADELARYGVPEEKIRVI-PNGVDTERF 170
>gnl|CDD|163642 cd07399, MPP_YvnB, Bacillus subtilis YvnB and related proteins,
metallophosphatase domain. YvnB (BSU35040) is an
uncharacterized Bacillus subtilis protein with a
metallophosphatase domain. This family includes
bacterial and eukaryotic proteins similar to YvnB. YvnB
belongs to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 214
Score = 28.8 bits (65), Expect = 2.3
Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 106 RYMNDVVIQH--HDTIITSSDLGLAVTCQYDLTNKTVSNEVDLGVQGDVKSALTEEVVVD 163
++ N+V+ +H I+T+ Y + + + +D + + +++V
Sbjct: 95 QWANEVLKKHPDRPAILTTHA--------YLNCDDSRPDSIDYDSDVNDGQQIWDKLVKK 146
Query: 164 SPNVAM 169
+ NV M
Sbjct: 147 NDNVFM 152
>gnl|CDD|202525 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family. This family
includes amidohydrolases of formamide EC:3.5.1.49 and
acetamide. Methylophilus methylotrophus fmdA forms a
homotrimer suggesting all the members of this family
also do.
Length = 316
Score = 27.8 bits (62), Expect = 6.3
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 15/68 (22%)
Query: 174 RSGADVKPSAEVGDPLALRFEILDPNSPYEIFVRELVAMDGVDSSEIVL--IDSNGCPTD 231
R D+ P+AEV +R E LD A+ G +
Sbjct: 7 RWHPDIPPAAEVKPGEIVRVETLD-------------ALGGQIKNNDSADDYKKIDLSVV 53
Query: 232 HFIMGPLY 239
H + GP+
Sbjct: 54 HPLTGPIE 61
>gnl|CDD|222548 pfam14109, GldH_lipo, GldH lipoprotein. Members of this protein
family are predicted lipoproteins, exclusive to the
Bacteroidetes phylum. Proteins in this family are
typically between 155 and 167 amino acids in length.
Members include GldH, a protein linked to a type of
rapid surface gliding motility found in certain
Bacteroidetes, such as Flavobacterium johnsoniae and
Cytophaga hutchinsonii. Gliding motility appears closely
linked to chitin utilization in the model species
Flavobacterium johnsoniae. Not all Bacteroidetes with
members of this protein family may have gliding
motility.
Length = 131
Score = 26.4 bits (59), Expect = 8.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 187 DPLALRFEILDPNSPYEIFV 206
D L+ F I D + PY +F+
Sbjct: 20 DTLSFEFPITDTSGPYNLFL 39
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.383
Gapped
Lambda K H
0.267 0.0692 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,096,903
Number of extensions: 1133342
Number of successful extensions: 780
Number of sequences better than 10.0: 1
Number of HSP's gapped: 774
Number of HSP's successfully gapped: 12
Length of query: 246
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 152
Effective length of database: 6,768,326
Effective search space: 1028785552
Effective search space used: 1028785552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.2 bits)