RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16319
(246 letters)
>3nk4_A ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP
domain, ZP module, egg-sperm interaction, species-specif
recognition, speciation; HET: A2G FLC; 2.00A {Gallus
gallus} PDB: 3nk3_A*
Length = 297
Score = 61.9 bits (149), Expect = 1e-11
Identities = 37/209 (17%), Positives = 71/209 (33%), Gaps = 17/209 (8%)
Query: 44 VSIDCRSGDMVARIKTNKLFDGKIYAKGS----PNSCVQDIKGSLDFELEMAFDDVECNV 99
V++ C+ +V + + G++ P +C + + A EC
Sbjct: 4 VAVQCQEAQLVVTVHRDLFGTGRLINAADLTLGPAACKHSSLNAAHNTVTFAAGLHECGS 63
Query: 100 KHQGLGR---YMNDVVIQ----HHDTIITSSDLGLAVTCQYDLTNKTVSNEVDLGVQGDV 152
Q Y + + II ++ + + C Y + SN +
Sbjct: 64 VVQVTPDTLIYRTLINYDPSPASNPVIIRTNPAVIPIECHYPRREQVSSNAIR--PTWSP 121
Query: 153 KSALTEEVVVDSPNVAMKITDRSGADVKPSAEVGDPLALRFEI-LDPNSPYEIFVRELVA 211
++ ++ + D S ++GD L ++ E+ + + P +FV VA
Sbjct: 122 FNSALSAEERLVFSLRLMSDDWSTERPFTGFQLGDILNIQAEVSTENHVPLRLFVDSCVA 181
Query: 212 ---MDGVDSSEIVLIDSNGCPTDHFIMGP 237
DG S +ID NGC D +
Sbjct: 182 ALSPDGDSSPHYAIIDFNGCLVDGRVDDT 210
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 1e-05
Identities = 42/276 (15%), Positives = 80/276 (28%), Gaps = 94/276 (34%)
Query: 24 QDPYLDVAEAQTYELSACYNVSIDCRSGDM-----------VAR-IKTNKLFDGKIY--- 68
PYL + +A EL NV ID G + V K D KI+
Sbjct: 134 LQPYLKLRQA-LLELRPAKNVLID---G-VLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 69 --AKGSPNSCVQDIKGSLDFELEMAFD---DVECNVKH------QGLGRYM--------- 108
SP + ++ ++ L ++++ + D N+K L R +
Sbjct: 189 LKNCNSPETVLEMLQ-KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 109 ---NDV----VIQHHD----TIITSSDLGLAVTCQYDLTNKTVSNEVDLGVQGDVKSALT 157
+V + ++T+ + D + + + L LT
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVT-----DFLSAATTTHISLD---HHSMTLT 299
Query: 158 EEVVVDSPNVAMKITDRSGADVKPSAEVGDPLAL------------RF------------ 193
+ + ++ +K D D+ +P L +
Sbjct: 300 PD---EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 194 -------EILDPNSPYEIFVRELVAMDGVDSSEIVL 222
+L+P ++F R V I+L
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Score = 41.0 bits (95), Expect = 2e-04
Identities = 42/281 (14%), Positives = 89/281 (31%), Gaps = 70/281 (24%)
Query: 1 MTLMRDQMQYSTLFDLASSCSSLQDPY---LDVAEAQTYELSACYNVSID--CRSGDMVA 55
M + QY D+ S +D + D + Q S ID S D V+
Sbjct: 7 MDFETGEHQYQYK-DILSV---FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 56 RIKTNKLFDGKIYAKGSPNSCVQD-IKGSL--DFELEMAFDDVECNVKHQGLGRYMNDVV 112
T +LF + +K VQ ++ L +++ M+ E Y
Sbjct: 63 G--TLRLFW-TLLSK--QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY----- 112
Query: 113 IQHHDTIITSSDL--GLAVT---CQYDLTN--KTVSNEVDLGVQGDV---KSALTEEVV- 161
I+ D + + + V+ L + ++ + G + K+ + +V
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 162 -------------------VDSPNVAMKITDRSGADVKPS----AEVGDPLALRFEILDP 198
+SP +++ + + P+ ++ + LR +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 199 -------NSPYEIFVRELVAMDGVDSSEIVLIDS--NGCPT 230
+ PYE L+ + V +++ ++ C
Sbjct: 233 ELRRLLKSKPYE---NCLLVLLNVQNAKA--WNAFNLSCKI 268
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.036
Identities = 36/252 (14%), Positives = 72/252 (28%), Gaps = 88/252 (34%)
Query: 5 RDQMQYSTLFDLASSCSSLQDPYLDVAEAQ-TYELSACYNVSIDCRSGDMVARI-KTNKL 62
R Y + S L+D L+ E + LS +S + + + KTN
Sbjct: 309 RCYEAYPNT---SLPPSILED-SLENNEGVPSPMLS----IS-NLTQEQVQDYVNKTNSH 359
Query: 63 F--DGKIYA--KGSPNSCV-----QDIKGSLDFELEMA------------FDDVECNVKH 101
++ + V Q + G L+ L A F + + +
Sbjct: 360 LPAGKQVEISLVNGAKNLVVSGPPQSLYG-LNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 102 QGL-------GRYMNDVV------IQHHDTIITSSDLGLAVTCQYDLTNKTVSNEVDL-G 147
+ L + + ++ + D+ + V YD T DL
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV---YD----TFDGS-DLRV 470
Query: 148 VQGDVKSALTEEV-----------------VVD-SP-------NVAMKITDRSGA----- 177
+ G + + + + ++D P + + D +G
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA 530
Query: 178 ---DVKPSAEVG 186
D+ P + G
Sbjct: 531 GTLDINPDDDYG 542
Score = 31.2 bits (70), Expect = 0.38
Identities = 36/261 (13%), Positives = 81/261 (31%), Gaps = 112/261 (42%)
Query: 10 YSTLFDLASSCSSLQDP-------YLDVAEAQTYELS---------ACYNVSIDCRS--- 50
++ ++ L++P YL + +S A Y V+ +
Sbjct: 209 FTQGLNILEW---LENPSNTPDKDYLL-----SIPISCPLIGVIQLAHYVVT--AKLLGF 258
Query: 51 --GDMVARIKTNKLFDGKIYAKGSPNSCVQDIKGSL---------DFE------LEMAF- 92
G++ + +K G+ Q + ++ F + + F
Sbjct: 259 TPGELRSYLK------------GA-TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 93 DDVECNVKHQGLGRY-MNDVVIQHHDTIITSSDLG-------LAVTCQYDLTNKTVSNEV 144
V C ++ + +++ S + L+++ +LT + V + V
Sbjct: 306 IGVRC---YEAYPNTSLPPSILE------DSLENNEGVPSPMLSIS---NLTQEQVQDYV 353
Query: 145 D-----LGVQGDVKSALTEEVVVDSPNVAMKITDRSGADVKPSAEVGDPLALRFEILDPN 199
+ L V+ +L V+ + ++ G P +L L+
Sbjct: 354 NKTNSHLPAGKQVEISL-----VNGAK-NLVVS-------------GPPQSLY--GLNLT 392
Query: 200 SPYEIFVRELVAMDGVDSSEI 220
+R+ A G+D S I
Sbjct: 393 ------LRKAKAPSGLDQSRI 407
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 27.8 bits (61), Expect = 3.1
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 25/98 (25%)
Query: 126 GLAVTCQYDLTNKTVSNEVDLGVQGDVK------SA--LTEE--------VVVDSP--NV 167
G+A+ Y ++ N VD + V S L++ V+ P N+
Sbjct: 117 GMAIQVNYS--SEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEPFENI 174
Query: 168 AMKI-----TDRSGADVKPSAEVGDPLALRFEILDPNS 200
A+++ D+ + + D L + D S
Sbjct: 175 AIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAIS 212
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex,
ubiquitin, hydrolase, Pro thiol protease, UBL
conjugation pathway, ubiquitin/hydrolas complex; 1.90A
{Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Length = 212
Score = 27.0 bits (59), Expect = 5.5
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 108 MNDVVIQHHDTIITSSDL 125
M+ VV+ + D+++ SD+
Sbjct: 1 MDPVVLSYMDSLLRQSDV 18
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 27.0 bits (59), Expect = 7.0
Identities = 5/37 (13%), Positives = 9/37 (24%), Gaps = 1/37 (2%)
Query: 196 LDPNSPYEIFVREL-VAMDGVDSSEIVLIDSNGCPTD 231
L P Y I+ + A + +
Sbjct: 672 LLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPK 708
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.383
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,779,326
Number of extensions: 227762
Number of successful extensions: 464
Number of sequences better than 10.0: 1
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 13
Length of query: 246
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 155
Effective length of database: 4,160,982
Effective search space: 644952210
Effective search space used: 644952210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.9 bits)