RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16319
         (246 letters)



>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 459

 Score = 27.2 bits (59), Expect = 2.1
 Identities = 7/41 (17%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 61  KLFDGKIYAKGSPNSCVQDIKGSLDFELEMAFDDVECNVKH 101
           KL+ G+    G+ +  ++    S+ ++  +   DV+ +  +
Sbjct: 2   KLWGGRF--VGAVDPIMEKFNASIAYDRHLWEVDVQGSKAY 40


>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 212

 Score = 26.6 bits (58), Expect = 2.3
 Identities = 6/18 (33%), Positives = 13/18 (72%)

Query: 108 MNDVVIQHHDTIITSSDL 125
           M+ VV+ + D+++  SD+
Sbjct: 1   MDPVVLSYMDSLLRQSDV 18


>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
           {Escherichia coli [TaxId: 562]}
          Length = 455

 Score = 26.0 bits (56), Expect = 4.5
 Identities = 6/32 (18%), Positives = 13/32 (40%)

Query: 70  KGSPNSCVQDIKGSLDFELEMAFDDVECNVKH 101
             + +   +    SL F+  +A  D+  +V  
Sbjct: 7   TQAADQRFKQFNDSLRFDYRLAEQDIVGSVAW 38


>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 228

 Score = 25.8 bits (55), Expect = 4.9
 Identities = 7/32 (21%), Positives = 12/32 (37%)

Query: 57  IKTNKLFDGKIYAKGSPNSCVQDIKGSLDFEL 88
           I+   L  GK+           DI   +D+ +
Sbjct: 184 IEMGYLQGGKMAYYEMRAEHSVDIDVDIDWPI 215


>d1mw9x_ e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 591

 Score = 25.6 bits (55), Expect = 7.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 160 VVVDSPNVAMKITDRSGADVKPSAEVG 186
           V+V+SP  A  I    G+D    + VG
Sbjct: 5   VIVESPAKAKTINKYLGSDYVVKSSVG 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0592    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 890,369
Number of extensions: 40038
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 6
Length of query: 246
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,268,006
Effective search space: 206684978
Effective search space used: 206684978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)