BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16320
(214 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q16832|DDR2_HUMAN Discoidin domain-containing receptor 2 OS=Homo sapiens GN=DDR2 PE=1
SV=2
Length = 855
Score = 133 bits (334), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 103/183 (56%), Gaps = 7/183 (3%)
Query: 31 GLVSYTMPQGEVKTFDSHSAHSSSLDLTDKTYDGVVEDGLLSGGLGQLTDGQIGADNFKM 90
GLVSY P G+ S + L D YDG V + + GLGQLTDG G D+F
Sbjct: 190 GLVSYNAPAGQQFVLPGGSI----IYLNDSVYDGAVGYSM-TEGLGQLTDGVSGLDDFTQ 244
Query: 91 DAKSRN-KGYEWIGWRNESFPYGKPVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHAN 149
+ GY+++GWRNES G +E++FEFDR+RNFT M +H NN ++K +++F
Sbjct: 245 THEYHVWPGYDYVGWRNESATNGY-IEIMFEFDRIRNFTTMKVHCNNMFAKGVKIFKEVQ 303
Query: 150 VYLSLGGRQFSLEPIQFTYMPDTIMEKARNVTIKLHHKQAKYLKLQMYFSNKWLLISEIM 209
Y ++ I F + D + AR VT+ LHH+ A +K Q +F++ W++ SEI
Sbjct: 304 CYFRSEASEWEPNAISFPLVLDDVNPSARFVTVPLHHRMASAIKCQYHFADTWMMFSEIT 363
Query: 210 FQS 212
FQS
Sbjct: 364 FQS 366
>sp|Q62371|DDR2_MOUSE Discoidin domain-containing receptor 2 OS=Mus musculus GN=Ddr2 PE=1
SV=2
Length = 854
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 103/183 (56%), Gaps = 7/183 (3%)
Query: 31 GLVSYTMPQGEVKTFDSHSAHSSSLDLTDKTYDGVVEDGLLSGGLGQLTDGQIGADNFKM 90
GLVSY P G+ S + L D YDG V + + GLGQLTDG G D+F
Sbjct: 190 GLVSYNAPAGQQFVLPG----GSIIYLNDSVYDGAVGYSM-TEGLGQLTDGVSGLDDFTQ 244
Query: 91 DAKSRN-KGYEWIGWRNESFPYGKPVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHAN 149
+ GY+++GWRNES G +E++FEFDR+RNFT M +H NN ++K +++F
Sbjct: 245 THEYHVWPGYDYVGWRNESATNGF-IEIMFEFDRIRNFTTMKVHCNNMFAKGVKIFKEVQ 303
Query: 150 VYLSLGGRQFSLEPIQFTYMPDTIMEKARNVTIKLHHKQAKYLKLQMYFSNKWLLISEIM 209
Y ++ + F + D + AR VT+ LHH+ A +K Q +F++ W++ SEI
Sbjct: 304 CYFRSEASEWEPTAVYFPLVLDDVNPSARFVTVPLHHRMASAIKCQYHFADTWMMFSEIT 363
Query: 210 FQS 212
FQS
Sbjct: 364 FQS 366
>sp|Q03146|DDR1_MOUSE Epithelial discoidin domain-containing receptor 1 OS=Mus musculus
GN=Ddr1 PE=2 SV=2
Length = 911
Score = 98.6 bits (244), Expect = 3e-20, Method: Composition-based stats.
Identities = 67/184 (36%), Positives = 95/184 (51%), Gaps = 8/184 (4%)
Query: 31 GLVSYTMPQGEVKTFDSHSAHSSSLDLTDKTYDGVVEDGLLSGGLGQLTDGQIGADNFKM 90
GL+SYT P G+ H L D TYDG GL GGLGQL DG +G D+F+
Sbjct: 191 GLLSYTAPVGQTMQLSEVMVH-----LNDSTYDGYTAGGLQYGGLGQLADGVVGLDDFRQ 245
Query: 91 DAKSRN-KGYEWIGWRNESFPYGKPVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHAN 149
+ R GY+++GW N+SFP G VEM FEFDR+R F M +H NN ++ ++
Sbjct: 246 SQELRVWPGYDYVGWSNQSFPTGY-VEMEFEFDRLRTFQTMQVHCNNMHTLGARLPGGVE 304
Query: 150 VYLSLG-GRQFSLEPIQFTYMPDTIMEKARNVTIKLHHKQAKYLKLQMYFSNKWLLISEI 208
G + EP++ +AR +++ L ++L+ + F+ WLL SEI
Sbjct: 305 CRFKRGPAMAWEGEPVRHALGGSLGDPRARAISVPLGGHVGRFLQCRFLFAGPWLLFSEI 364
Query: 209 MFQS 212
F S
Sbjct: 365 SFIS 368
>sp|Q63474|DDR1_RAT Epithelial discoidin domain-containing receptor 1 OS=Rattus
norvegicus GN=Ddr1 PE=2 SV=1
Length = 910
Score = 96.3 bits (238), Expect = 1e-19, Method: Composition-based stats.
Identities = 67/184 (36%), Positives = 95/184 (51%), Gaps = 9/184 (4%)
Query: 31 GLVSYTMPQGEVKTFDSHSAHSSSLDLTDKTYDGVVEDGLLSGGLGQLTDGQIGADNFKM 90
GL+SYT P G+ S + L D TYDG GL GGLGQL DG +G D+F+
Sbjct: 191 GLLSYTAPVGQTMQL------SEMVYLNDSTYDGYTAGGLQYGGLGQLADGVVGLDDFRQ 244
Query: 91 DAKSRN-KGYEWIGWRNESFPYGKPVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHAN 149
+ R GY+++GW N SFP G VEM FEFDR+R+F M +H NN ++ ++
Sbjct: 245 SQELRVWPGYDYVGWSNHSFPSGY-VEMEFEFDRLRSFQTMQVHCNNMHTLGARLPGGVE 303
Query: 150 VYLSLG-GRQFSLEPIQFTYMPDTIMEKARNVTIKLHHKQAKYLKLQMYFSNKWLLISEI 208
G + EP+ +AR +++ L ++L+ + F+ WLL SEI
Sbjct: 304 CRFKRGPAMAWEGEPVHHALGGSLGDPRARAISVPLGGHVGRFLQCRFLFAGPWLLFSEI 363
Query: 209 MFQS 212
F S
Sbjct: 364 SFIS 367
>sp|Q7YR43|DDR1_PANTR Epithelial discoidin domain-containing receptor 1 OS=Pan
troglodytes GN=DDR1 PE=3 SV=1
Length = 909
Score = 95.9 bits (237), Expect = 2e-19, Method: Composition-based stats.
Identities = 69/184 (37%), Positives = 99/184 (53%), Gaps = 9/184 (4%)
Query: 31 GLVSYTMPQGEVKTFDSHSAHSSSLDLTDKTYDGVVEDGLLSGGLGQLTDGQIGADNFKM 90
GL+SYT P G+ S ++ L D TYDG GL GGLGQL DG +G D+F+
Sbjct: 186 GLLSYTAPVGQTMYL------SEAVYLNDSTYDGHTVGGLQYGGLGQLADGVVGLDDFRK 239
Query: 91 DAKSRN-KGYEWIGWRNESFPYGKPVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHAN 149
+ R GY+++GW N SF G VEM FEFDR+R F AM +H NN ++ ++
Sbjct: 240 SQELRVWPGYDYVGWSNHSFSSGY-VEMEFEFDRLRAFQAMQVHCNNMHTLGARLPGGVE 298
Query: 150 VYLSLG-GRQFSLEPIQFTYMPDTIMEKARNVTIKLHHKQAKYLKLQMYFSNKWLLISEI 208
G + EP++ + +AR V++ L + A++L+ + F+ WLL SEI
Sbjct: 299 CRFRRGPAMAWEGEPMRHNLGGNLGDPRARAVSVPLGGRVARFLQCRFLFAGPWLLFSEI 358
Query: 209 MFQS 212
F S
Sbjct: 359 SFIS 362
>sp|Q08345|DDR1_HUMAN Epithelial discoidin domain-containing receptor 1 OS=Homo sapiens
GN=DDR1 PE=1 SV=1
Length = 913
Score = 95.9 bits (237), Expect = 2e-19, Method: Composition-based stats.
Identities = 69/184 (37%), Positives = 99/184 (53%), Gaps = 9/184 (4%)
Query: 31 GLVSYTMPQGEVKTFDSHSAHSSSLDLTDKTYDGVVEDGLLSGGLGQLTDGQIGADNFKM 90
GL+SYT P G+ S ++ L D TYDG GL GGLGQL DG +G D+F+
Sbjct: 190 GLLSYTAPVGQTMYL------SEAVYLNDSTYDGHTVGGLQYGGLGQLADGVVGLDDFRK 243
Query: 91 DAKSRN-KGYEWIGWRNESFPYGKPVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHAN 149
+ R GY+++GW N SF G VEM FEFDR+R F AM +H NN ++ ++
Sbjct: 244 SQELRVWPGYDYVGWSNHSFSSGY-VEMEFEFDRLRAFQAMQVHCNNMHTLGARLPGGVE 302
Query: 150 VYLSLG-GRQFSLEPIQFTYMPDTIMEKARNVTIKLHHKQAKYLKLQMYFSNKWLLISEI 208
G + EP++ + +AR V++ L + A++L+ + F+ WLL SEI
Sbjct: 303 CRFRRGPAMAWEGEPMRHNLGGNLGDPRARAVSVPLGGRVARFLQCRFLFAGPWLLFSEI 362
Query: 209 MFQS 212
F S
Sbjct: 363 SFIS 366
>sp|B0K0N5|SYD_THEPX Aspartate--tRNA ligase OS=Thermoanaerobacter sp. (strain X514)
GN=aspS PE=3 SV=1
Length = 592
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 35 YTMPQGEVKTFDSHSAHSSSLDLTDKTYDGVVEDGLLSGGLGQLTDGQIGADNFKMDAKS 94
+T P+ E D L + K YD V+ + GG ++ D ++ FK+ S
Sbjct: 458 FTAPKDE----DIELLEKEPLKVRAKAYDIVLNGTEIGGGSIRIHDTELQKRMFKVLGFS 513
Query: 95 RNKGYEWIGWRNESFPYGKP 114
K +E G+ E+F YG P
Sbjct: 514 EEKAWERFGFLMEAFKYGAP 533
>sp|B0K978|SYD_THEP3 Aspartate--tRNA ligase OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=aspS PE=3 SV=1
Length = 592
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 35 YTMPQGEVKTFDSHSAHSSSLDLTDKTYDGVVEDGLLSGGLGQLTDGQIGADNFKMDAKS 94
+T P+ E D L + K YD V+ + GG ++ D ++ FK+ S
Sbjct: 458 FTAPKDE----DIELLEKEPLKVRAKAYDIVLNGTEIGGGSIRIHDTELQKRMFKVLGFS 513
Query: 95 RNKGYEWIGWRNESFPYGKP 114
K +E G+ E+F YG P
Sbjct: 514 EEKAWERFGFLMEAFKYGAP 533
>sp|Q9PQK5|SYD_UREPA Aspartate--tRNA ligase OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=aspS PE=3 SV=1
Length = 578
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 35 YTMPQGE-VKTFDSHSAHSSSLDLTDKTYDGVVEDGLLSGGLGQLTDGQIGADNFKMDAK 93
+TMP E + TFD + D ++YD V+ L GG ++ D QI FK
Sbjct: 443 FTMPTLETLNTFDVNKK-----DARGRSYDIVLNGYELGGGSVRIIDQQIQRRMFKSINM 497
Query: 94 SRNKGYEWIGWRNESFPYGKP--VEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHAN 149
S + G+ +F YG P + DR+ M + +N+ Y +D+ F N
Sbjct: 498 SDEEANLKFGFLLTAFEYGVPPHCGIALGLDRL-----MMILVNSEYIRDVVAFPKNN 550
>sp|Q8XJ28|SYD_CLOPE Aspartate--tRNA ligase OS=Clostridium perfringens (strain 13 / Type
A) GN=aspS PE=3 SV=1
Length = 597
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 19/142 (13%)
Query: 21 LLGADEEQNQGLVS---YTMPQGE-VKTFDSHSAHSSSLDLTDKTYDGVVEDGLLSGGLG 76
LL DEE+ + + +TMP E +K D+ + K YD V+ L GG
Sbjct: 440 LLEYDEEEGRYFAAHHPFTMPMDEDIKYLDTDPGRVRA-----KAYDLVLNGEELGGGSI 494
Query: 77 QLTDGQIGADNFKMDAKSRNKGYEWIGWRNESFPYGKPVE--MVFEFDRVRNFTAMHLHI 134
++ D ++ F++ ++ +E G+ E+F +G P + F DR+ F A +I
Sbjct: 495 RIHDTKLQEKMFEVLGFTQESAWERFGFLLEAFKFGPPPHGGLAFGLDRMIMFLAGTENI 554
Query: 135 NNYYSKDIQVFS---HANVYLS 153
KD+ F +A YL+
Sbjct: 555 -----KDVITFPKNQNAFCYLT 571
>sp|Q0TP28|SYD_CLOP1 Aspartate--tRNA ligase OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=aspS PE=3 SV=1
Length = 597
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 19/142 (13%)
Query: 21 LLGADEEQNQGLVS---YTMPQGE-VKTFDSHSAHSSSLDLTDKTYDGVVEDGLLSGGLG 76
LL DEE+ + + +TMP E +K D+ + K YD V+ L GG
Sbjct: 440 LLEYDEEEGRYFAAHHPFTMPMDEDIKYLDTDPGRVRA-----KAYDLVLNGEELGGGSI 494
Query: 77 QLTDGQIGADNFKMDAKSRNKGYEWIGWRNESFPYGKPVE--MVFEFDRVRNFTAMHLHI 134
++ D ++ F++ ++ +E G+ E+F +G P + F DR+ F A +I
Sbjct: 495 RIHDTKLQEKMFEVLGFTQESAWERFGFLLEAFKFGPPPHGGLAFGLDRMIMFLAGTENI 554
Query: 135 NNYYSKDIQVFS---HANVYLS 153
KD+ F +A YL+
Sbjct: 555 -----KDVITFPKNQNAFCYLT 571
>sp|Q0SRP8|SYD_CLOPS Aspartate--tRNA ligase OS=Clostridium perfringens (strain SM101 /
Type A) GN=aspS PE=3 SV=1
Length = 597
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 19/142 (13%)
Query: 21 LLGADEEQNQGLVS---YTMPQGE-VKTFDSHSAHSSSLDLTDKTYDGVVEDGLLSGGLG 76
LL DEE+ + + +TMP E +K D+ + K YD V+ L GG
Sbjct: 440 LLEYDEEEGRYFAAHHPFTMPMDEDIKYLDTDPGRVRA-----KAYDLVLNGEELGGGSI 494
Query: 77 QLTDGQIGADNFKMDAKSRNKGYEWIGWRNESFPYGKPVE--MVFEFDRVRNFTAMHLHI 134
++ D ++ F++ ++ +E G+ E+F +G P + F DR+ F A +I
Sbjct: 495 RIHDTKLQEKMFEVLGFTQESAWERFGFLLEAFKFGPPPHGGLAFGLDRMIMFLAGTENI 554
Query: 135 NNYYSKDIQVFS---HANVYLS 153
KD+ F +A YL+
Sbjct: 555 -----KDVITFPKNQNAFCYLT 571
>sp|Q5FKI4|SYD_LACAC Aspartate--tRNA ligase OS=Lactobacillus acidophilus (strain ATCC
700396 / NCK56 / N2 / NCFM) GN=aspS PE=3 SV=1
Length = 614
Score = 33.9 bits (76), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 35 YTMPQGE---VKTFDSHSAHSSSLDLTDKTYDGVVEDGLLSGGLGQLTDGQIGADNFKMD 91
+TMP E + T D H AH+ S YD V+ + GG ++ I D FK
Sbjct: 451 FTMPDDEGVKLLTTDPHKAHARS-------YDIVMNGDEMGGGSIRIHKRSIQEDMFKAL 503
Query: 92 AKSRNKGYEWIGWRNESFPYGKP 114
++ + YE G+ ++F G P
Sbjct: 504 GFTKKRAYEQFGYLMDAFDMGFP 526
>sp|Q8RAI7|SYD_THETN Aspartate--tRNA ligase OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=aspS PE=3
SV=1
Length = 592
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 21 LLGADEEQNQGLVS---YTMPQGEVKTFDSHSAHSSSLDLTDKTYDGVVEDGLLSGGLGQ 77
LL DEE+ + + +T P+ E D L + K YD V+ + GG +
Sbjct: 441 LLEYDEEEKRYVAKHHPFTSPKDE----DIDLLEKEPLKVRAKAYDIVLNGTEIGGGSIR 496
Query: 78 LTDGQIGADNFKMDAKSRNKGYEWIGWRNESFPYGKP 114
+ D ++ FK+ S + ++ G+ E+F YG P
Sbjct: 497 IHDTELQKRMFKVLGFSEEEAWKKFGFLMEAFKYGAP 533
>sp|A0PZX0|SYD_CLONN Aspartate--tRNA ligase OS=Clostridium novyi (strain NT) GN=aspS
PE=3 SV=1
Length = 593
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 35 YTMPQGEVKTFDSHSAHSSSLDLTDKTYDGVVEDGLLSGGLGQLTDGQIGADNFKMDAKS 94
+TMP E D S + K YD V+ L GG ++ D ++ F + +
Sbjct: 457 FTMPMDE----DIEYLESDPGRVRAKAYDIVLNGEELGGGSIRIHDTKLQEKMFNVLGFT 512
Query: 95 RNKGYEWIGWRNESFPYGKPVE--MVFEFDRVRNFTAMHLHINNYYSKDIQVF-SHANVY 151
+E G+ E+F +G P + + FDR+ F A +I KD+ F + N Y
Sbjct: 513 SESAWERFGFLLEAFKFGPPPHGGLAYGFDRMIMFLAGTENI-----KDVIAFPKNQNAY 567
Query: 152 LSL 154
L
Sbjct: 568 CPL 570
>sp|Q58555|Y1155_METJA UPF0313 protein MJ1155 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ1155 PE=3 SV=1
Length = 603
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 129 AMHLHINNYYSKDIQVFSHANVYLSLGGRQFSLEPI--QFTYMPDTIMEKARNVTIKLHH 186
A +H NN YS+ +QVF+ + LS + PI + Y+P T EK I L+
Sbjct: 498 AEFIHKNNCYSRQVQVFTPTPMTLSTTMYHTGINPITNEKVYVPYTYREKKIQKAICLYR 557
Query: 187 KQAKYLK 193
++ + K
Sbjct: 558 EEENWEK 564
>sp|A8FAS0|GATA_BACP2 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus pumilus
(strain SAFR-032) GN=gatA PE=3 SV=1
Length = 485
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Query: 1 GKVHFLLGADEEQNPGKVHFLLGADEEQNQGLVSYTMPQG---EVKTFDSHSAHSSS-LD 56
GKV L DEE+ L A E+++ + + MP G + T D + SS L
Sbjct: 38 GKVQAFLALDEEKARAYAKELDEAVGEKDELGLLFGMPIGVKDNIVTKDLRTTASSKILQ 97
Query: 57 LTDKTYDGVVEDGLLSGGLGQLTDGQIGADNFKMDAKSRNKGYEWI--GWRNESFP 110
D YD V + L + +T G++ D F M + + N GY+ W + P
Sbjct: 98 NFDPIYDATVVNRLRDAEV--VTIGKLNMDEFAMGSSTENSGYKATKNPWNLNTVP 151
>sp|C4ZI12|SYD_EUBR3 Aspartate--tRNA ligase OS=Eubacterium rectale (strain ATCC 33656 /
VPI 0990) GN=aspS PE=3 SV=1
Length = 598
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Query: 21 LLGADEEQNQGLV---SYTMPQGEVKTFDSHSAHSSSLDLTDKTYDGVVEDGLLSGGLGQ 77
LL +E+N+ + +TMP E D S + K YD V+ L GG +
Sbjct: 442 LLEWSDEENRFMAMHHPFTMPMEE----DWDKIDSDPGAVRAKAYDIVLNGTELGGGSVR 497
Query: 78 LTDGQIGADNFKMDAKSRNKGYEWIGWRNESFPYGKP--VEMVFEFDRVRNFTAMH-LHI 134
+ I F++ ++ + +E G+ ++F YG P + F DR+ MH LH
Sbjct: 498 IHQDDIQEKMFEVLGFTKERAHEQFGFLLDAFSYGVPPHAGLAFGVDRI----CMHMLHT 553
Query: 135 NN 136
+N
Sbjct: 554 DN 555
>sp|Q892B2|SYD_CLOTE Aspartate--tRNA ligase OS=Clostridium tetani (strain Massachusetts
/ E88) GN=aspS PE=3 SV=1
Length = 592
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 60 KTYDGVVEDGLLSGGLGQLTDGQIGADNFKMDAKSRNKGYEWIGWRNESFPYGKPVE--M 117
K YD V+ L GG ++ D ++ F++ + K +E G+ E+F +G P +
Sbjct: 479 KAYDIVLNGEELGGGSIRIHDTKLQEKMFEVLGFTEEKAWERFGFLLEAFKFGPPPHGGL 538
Query: 118 VFEFDRVRNFTAMHLHINNYYS 139
F FDR+ F + +I + +
Sbjct: 539 AFGFDRMIMFLSGTENIKDVIA 560
>sp|B2TN05|SYD_CLOBB Aspartate--tRNA ligase OS=Clostridium botulinum (strain Eklund 17B
/ Type B) GN=aspS PE=3 SV=1
Length = 599
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 14/124 (11%)
Query: 35 YTMPQGEVKTFDSHSAHSSSLDLTDKTYDGVVEDGLLSGGLGQLTDGQIGADNFKMDAKS 94
+T P E D S+ + K YD V+ L GG ++ D ++ FK +
Sbjct: 457 FTAPMEE----DLEFLESAPGKVRSKAYDLVLNGEELGGGSIRIHDMELQQRMFKALGFT 512
Query: 95 RNKGYEWIGWRNESFPYGKPVE--MVFEFDRVRNFTAMHLHINNYYSKDIQVFS---HAN 149
+ +E G+ ++F +G P + F DR+ F A +I KD+ F +A
Sbjct: 513 EEQAWERFGFLLQAFKFGPPPHGGLAFGLDRMIMFLAGTENI-----KDVIAFPKNQNAY 567
Query: 150 VYLS 153
YLS
Sbjct: 568 CYLS 571
>sp|Q3AA17|SYD_CARHZ Aspartate--tRNA ligase OS=Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008) GN=aspS PE=3 SV=1
Length = 592
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 34 SYTMPQGEVKTFDSHSAHSSSLDLTDKTYDGVVEDGLLSGGLGQLTDGQIGADNFKMDAK 93
+T P E D + L + K YD V+ + GG ++ I FK+
Sbjct: 451 PFTAPMDE----DLPLMDENPLLVRAKAYDMVLNGVEIGGGSIRIHRRDIQEKMFKLIGL 506
Query: 94 SRNKGYEWIGWRNESFPYGKPVE--MVFEFDRVRNFTAMHLHINNYYS 139
S + E G+ E+F YG P + F FDR+ A I + +
Sbjct: 507 SEEEAKEKFGFMLEAFEYGTPPHGGIAFGFDRLVMLMAGRESIRDVIA 554
>sp|C4L535|SYD_EXISA Aspartate--tRNA ligase OS=Exiguobacterium sp. (strain ATCC BAA-1283
/ AT1b) GN=aspS PE=3 SV=1
Length = 590
Score = 30.8 bits (68), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 35 YTMPQGEVKTFDSHSAHSSSLDLTDKTYDGVVEDGLLSGGLGQLTDGQIGADNFKMDAKS 94
+TMP E D H + + YD V+ L GG ++ + I FK+ +
Sbjct: 452 FTMPNRE----DLHLLETDPASVRAVAYDLVLNGYELGGGSQRIYERDIQERMFKLLGFT 507
Query: 95 RNKGYEWIGWRNESFPYGKP 114
+ + E G+ E+F YG P
Sbjct: 508 QEEAVEQFGFLLEAFEYGTP 527
>sp|Q4L6X5|SYD_STAHJ Aspartate--tRNA ligase OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=aspS PE=3 SV=1
Length = 588
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 21 LLGADEEQNQGLVS---YTMP-QGEVKTFDSHSAHSSSLDLTDKTYDGVVEDGLLSGGLG 76
LL DE+ + + + +T P Q ++ DS ++ + YD V+ L GG
Sbjct: 437 LLEYDEDAKRYVAAHHPFTSPKQEDISKLDSEPQNAQA-----NAYDIVLNGYELGGGSI 491
Query: 77 QLTDGQIGADNFKMDAKSRNKGYEWIGWRNESFPYGKP 114
++ DG++ F++ ++ + E G+ ++F YG P
Sbjct: 492 RIADGELQEKMFEVLGFTKEQAREQFGFLLDAFKYGAP 529
>sp|B2V351|SYD_CLOBA Aspartate--tRNA ligase OS=Clostridium botulinum (strain Alaska E43
/ Type E3) GN=aspS PE=3 SV=1
Length = 599
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 14/124 (11%)
Query: 35 YTMPQGEVKTFDSHSAHSSSLDLTDKTYDGVVEDGLLSGGLGQLTDGQIGADNFKMDAKS 94
+T P E D S+ + K YD V+ L GG ++ D ++ FK +
Sbjct: 457 FTAPMEE----DLDFLESAPGKVRSKAYDLVLNGEELGGGSIRIHDMELQQRMFKALGFT 512
Query: 95 RNKGYEWIGWRNESFPYGKPVE--MVFEFDRVRNFTAMHLHINNYYSKDIQVFS---HAN 149
+ +E G+ ++F +G P + F DR+ F A +I KD+ F +A
Sbjct: 513 EEQAWERFGFLLQAFKFGPPPHGGLAFGLDRMIMFLAGTENI-----KDVIAFPKNQNAY 567
Query: 150 VYLS 153
YLS
Sbjct: 568 CYLS 571
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,396,083
Number of Sequences: 539616
Number of extensions: 3682939
Number of successful extensions: 7868
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 7833
Number of HSP's gapped (non-prelim): 45
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)