Query psy16320
Match_columns 214
No_of_seqs 148 out of 162
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 18:23:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1094|consensus 100.0 1.4E-60 3E-65 452.7 15.4 197 9-213 161-360 (807)
2 PF00754 F5_F8_type_C: F5/8 ty 98.7 2.1E-07 4.5E-12 70.4 11.0 91 113-208 36-129 (129)
3 cd00057 FA58C Substituted upda 98.0 5.3E-05 1.2E-09 59.1 10.1 95 114-210 45-141 (143)
4 smart00231 FA58C Coagulation f 95.6 0.17 3.6E-06 39.8 9.8 75 115-197 45-124 (139)
5 cd08366 APC10 APC10 subunit of 93.6 1.4 3E-05 35.8 10.8 100 71-197 16-121 (139)
6 PF03256 APC10: Anaphase-promo 88.9 2.4 5.3E-05 36.2 7.9 77 114-197 67-148 (193)
7 PF07738 Sad1_UNC: Sad1 / UNC- 88.4 6.5 0.00014 30.8 9.6 91 114-209 31-130 (135)
8 PF13163 DUF3999: Protein of u 82.4 4 8.7E-05 38.7 6.7 69 125-196 125-194 (429)
9 cd08664 APC10-HERC2 APC10-like 71.2 33 0.00071 28.5 8.2 60 72-154 37-97 (152)
10 PF14652 DUF4457: Domain of un 68.0 23 0.00049 32.6 7.4 56 71-139 52-107 (329)
11 cd08159 APC10-like APC10-like 65.9 69 0.0015 25.7 9.2 97 74-197 15-112 (129)
12 smart00136 LamNT Laminin N-ter 62.2 29 0.00062 30.6 6.6 42 114-161 87-128 (238)
13 PF00055 Laminin_N: Laminin N- 59.7 33 0.00071 30.1 6.5 42 114-161 85-126 (237)
14 KOG3437|consensus 58.6 97 0.0021 26.5 8.8 52 104-159 51-102 (184)
15 KOG4276|consensus 58.0 89 0.0019 24.5 7.8 88 115-207 8-105 (113)
16 cd08665 APC10-CUL7 APC10-like 57.1 92 0.002 25.2 8.2 61 73-154 14-74 (131)
17 PF01477 PLAT: PLAT/LH2 domain 52.9 86 0.0019 23.0 7.1 79 129-212 2-85 (113)
18 cd08365 APC10-like1 APC10-like 51.9 1.3E+02 0.0027 24.3 9.2 61 74-155 16-76 (131)
19 cd08667 APC10-ZZEF1 APC10/DOC1 50.8 1.3E+02 0.0029 24.2 9.5 77 114-197 36-113 (131)
20 smart00607 FTP eel-Fucolectin 50.4 1.4E+02 0.003 24.4 10.1 90 117-212 54-146 (151)
21 PF13163 DUF3999: Protein of u 50.3 64 0.0014 30.7 7.3 77 115-198 236-315 (429)
22 PF14305 ATPgrasp_TupA: TupA-l 32.4 43 0.00094 29.2 2.9 25 189-213 195-219 (239)
23 COG2430 Uncharacterized conser 31.3 3.5E+02 0.0075 24.1 8.2 71 142-212 87-169 (236)
24 cd08666 APC10-HECTD3 APC10-lik 30.2 3E+02 0.0065 22.3 9.2 63 71-154 17-79 (134)
25 PF05547 Peptidase_M6: Immune 30.0 2.4E+02 0.0052 28.7 7.9 61 152-212 390-460 (645)
26 PF10827 DUF2552: Protein of u 27.8 42 0.00091 24.7 1.7 13 200-212 43-55 (79)
27 COG5156 DOC1 Anaphase-promotin 26.6 3.2E+02 0.0069 23.2 6.8 45 104-152 55-99 (189)
28 smart00698 MORN Possible plasm 26.4 26 0.00056 20.2 0.3 18 61-79 2-19 (26)
29 cd00602 IPT_TF IPT domain of e 22.1 2.3E+02 0.005 21.7 5.0 56 115-170 45-101 (101)
30 KOG3516|consensus 21.7 99 0.0021 33.6 3.6 42 114-162 74-119 (1306)
No 1
>KOG1094|consensus
Probab=100.00 E-value=1.4e-60 Score=452.71 Aligned_cols=197 Identities=38% Similarity=0.650 Sum_probs=189.1
Q ss_pred ccccCCCceeeEEee-CCCccCCceEEEeCCCCCcccccCCCCCCCCeeeEeecccCccccc-cccCcceeeecccccCC
Q psy16320 9 ADEEQNPGKVHFLLG-ADEEQNQGLVSYTMPQGEVKTFDSHSAHSSSLDLTDKTYDGVVEDG-LLSGGLGQLTDGQIGAD 86 (214)
Q Consensus 9 ~~~~~~p~~~~~~l~-~GC~w~dglvsYs~P~G~~~~~~~~~~~g~~~~l~D~tYDG~~~~~-~l~gGlGqLtDGi~G~d 86 (214)
||.|++-+.||||.| |||.|.|||+||++|.|+.+.++ .++|+|++|||+.+.+ ++.||||||+||++|.|
T Consensus 161 ~P~s~~~rtVCmRvEi~GC~w~dglvsY~~pvgq~~~l~-------~i~l~Ds~ydg~~~~~~~~~Gglgql~dg~~g~d 233 (807)
T KOG1094|consen 161 VPVSDRTRTVCMRVELYGCLWRDGLVSYNAPVGQGMYLS-------AIYLNDSTYDGHTVGSPLQYGGLGQLADGVVGLD 233 (807)
T ss_pred EeccCCcceEEEEEEEeccccccceeEeccccCcccccc-------ceeeccccccccccCccccccccccccccccccc
Confidence 799999999999998 99999999999999999998555 3689999999999987 78889999999999999
Q ss_pred Cc-cccccCCCCCcceEEeecCCCCCCCcEEEEEEcCceEEEeEEEEEEecccCCceeeeeEEEEEEEeCCcccccccee
Q psy16320 87 NF-KMDAKSRNKGYEWIGWRNESFPYGKPVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHANVYLSLGGRQFSLEPIQ 165 (214)
Q Consensus 87 nf-~~~~~~~~~g~~WVGW~n~~~~~~~~VeitFeF~~~rnfs~v~ih~~n~~~~~V~~f~~v~v~fS~dG~~f~~~~~~ 165 (214)
|| ++++++.||||+||||+|+++. +++|||.|||+++|||++|.|||||||++++++|+.|+|.||.+|+.|+..++.
T Consensus 234 ~f~~~~~~~~w~gyd~vGWrn~s~~-~g~vei~FEF~~~rnfs~~~vhtnNmf~k~~ri~~~~~~~f~~~gk~~~~~~~~ 312 (807)
T KOG1094|consen 234 DFRKNQELHVWPGYDYVGWRNDSFT-NGYVEIEFEFDELRNFSAMQVHTNNMFTKGARIFGGVEVRFSGPGKAFEGEPMR 312 (807)
T ss_pred hhhhhhhcCcccCcccceecccccc-CCceEEEEEhhhhcccceeEEecccccccccccccceeEEEccCcccCCCceee
Confidence 99 6777899999999999999876 899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcccccceEEEEeCCCceeeEEEEEEEcCCeeEEEEEEEEEec
Q psy16320 166 FTYMPDTIMEKARNVTIKLHHKQAKYLKLQMYFSNKWLLISEIMFQSV 213 (214)
Q Consensus 166 ~~~~~d~~~~~ar~vti~l~~r~ar~VKi~l~fa~~Wl~iSEI~F~S~ 213 (214)
++...|..++.||+|+||||+|+||++||++.|++.|||||||+|+|+
T Consensus 313 ~~~~~~~~n~~~R~vrvPl~nR~ar~~k~~~~F~~dWlf~sEv~F~S~ 360 (807)
T KOG1094|consen 313 FNLGGDLGNPRARAVRVPLHNRVARFLKIRFLFAGDWLFFSEVSFISD 360 (807)
T ss_pred ccCccccCCCccceEEeeccchhhheeEEEEEcCCceEEEEEEEEeec
Confidence 999999999999999999999999999999999999999999999995
No 2
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=98.72 E-value=2.1e-07 Score=70.35 Aligned_cols=91 Identities=14% Similarity=0.207 Sum_probs=68.2
Q ss_pred CcEEEEEEcCceEEEeEEEEEEecccCCceeeeeEEEEEEEeCCccccccceeeecCCCcccccceEEEEeCCCceeeEE
Q psy16320 113 KPVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHANVYLSLGGRQFSLEPIQFTYMPDTIMEKARNVTIKLHHKQAKYL 192 (214)
Q Consensus 113 ~~VeitFeF~~~rnfs~v~ih~~n~~~~~V~~f~~v~v~fS~dG~~f~~~~~~~~~~~d~~~~~ar~vti~l~~r~ar~V 192 (214)
.+-.+++||++++.++.|.|...++... ..|++++|+.|.||.+|......+....+ ........-.....||||
T Consensus 36 ~~~~i~idl~~~~~i~~i~i~~~~~~~~--~~~~~~~i~~s~dg~~w~~~~~~~~~~~~---~~~~~~~~~~~~~~~ryi 110 (129)
T PF00754_consen 36 SPQWIQIDLGKPYTISGISIQFRNDGNN--GRPKSFKIEYSNDGSNWTTVASQFYGNTN---SGSVVTISFFPPVKARYI 110 (129)
T ss_dssp STEEEEEEEEEEEEEEEEEEEEESSTTT--EEEEEEEEEEESSSSSEEEEEETEEEESS---SSSSEEEEEEEEEEEEEE
T ss_pred CCceEEEEeeeeEecceeeecccccccc--eeeeeeeeeeecccccccccccceeeccC---CCceEEEEeCCCeEEEEE
Confidence 3588999999999999999999988876 67999999999999999766543100111 111111123335689999
Q ss_pred EEEEE---cCCeeEEEEEE
Q psy16320 193 KLQMY---FSNKWLLISEI 208 (214)
Q Consensus 193 Ki~l~---fa~~Wl~iSEI 208 (214)
||.+. ..+.|+.|.||
T Consensus 111 ri~~~~~~~~~~~~~i~Ei 129 (129)
T PF00754_consen 111 RITVTSWNGNNGWVSIAEI 129 (129)
T ss_dssp EEEEEEEESCSSEEEEEEE
T ss_pred EEEEEEECCCCceEEEEeC
Confidence 99994 47999999998
No 3
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=98.05 E-value=5.3e-05 Score=59.07 Aligned_cols=95 Identities=14% Similarity=0.057 Sum_probs=66.0
Q ss_pred cEEEEEEcCceEEEeEEEEEEecccCCceeeeeEEEEEEEeCCccccccceeeecCCCcccc-cceEEEEeCCC-ceeeE
Q psy16320 114 PVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHANVYLSLGGRQFSLEPIQFTYMPDTIME-KARNVTIKLHH-KQAKY 191 (214)
Q Consensus 114 ~VeitFeF~~~rnfs~v~ih~~n~~~~~V~~f~~v~v~fS~dG~~f~~~~~~~~~~~d~~~~-~ar~vti~l~~-r~ar~ 191 (214)
+-.|++||++++.|+.|.+.-...- ..-..+++.+|+.|.||.+|.............-+. ....+++.|.. ..|||
T Consensus 45 ~~wi~vDL~~~~~i~~v~i~~~~~~-~~~~~~~~~~i~~s~dg~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~pv~aRy 123 (143)
T cd00057 45 PQWLQVDLGKTRRVTGIQTQGRKGG-GSSEWVTSYKVQYSLDGETWTTYKDKGEEKVFTGNSDGSTPVTNDFPPPIVARY 123 (143)
T ss_pred CceEEEECCCCEEEEEEEEccCCCC-CccCeeEEEEEEEECCCCCEeEEEcCCcEEEEeCCcCCCeEEEEeCCCCEEEEE
Confidence 3678999999999999998765431 134457888999999999997543210000000111 12466777764 88999
Q ss_pred EEEEEEcCCeeEEEEEEEE
Q psy16320 192 LKLQMYFSNKWLLISEIMF 210 (214)
Q Consensus 192 VKi~l~fa~~Wl~iSEI~F 210 (214)
|||.+.-...|+-| ||.+
T Consensus 124 vRl~~~~~~~~~~l-e~ev 141 (143)
T cd00057 124 IRILPTTWNGNISL-RLEL 141 (143)
T ss_pred EEEEEeecCCccEE-EEEE
Confidence 99999876669999 9876
No 4
>smart00231 FA58C Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
Probab=95.58 E-value=0.17 Score=39.83 Aligned_cols=75 Identities=12% Similarity=0.078 Sum_probs=48.5
Q ss_pred EEEEEEcCceEEEeEEEEEEecccCCceeeeeEEEEEEEeCCccccccc----eeeecCCCcccccceEEEEeCCC-cee
Q psy16320 115 VEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHANVYLSLGGRQFSLEP----IQFTYMPDTIMEKARNVTIKLHH-KQA 189 (214)
Q Consensus 115 VeitFeF~~~rnfs~v~ih~~n~~~~~V~~f~~v~v~fS~dG~~f~~~~----~~~~~~~d~~~~~ar~vti~l~~-r~a 189 (214)
--|.+||.+++.++.|.+--......++..+ .+ +|.||..|.... ..+. ..... ...++..|.. ..|
T Consensus 45 ~wlqvDLg~~~~v~~i~~qg~~~~~~~~~~~---~~-~s~dg~~W~~~~~~~~~~f~--gn~d~--~~~~~~~~~~~v~A 116 (139)
T smart00231 45 PWIQVDLGRTRTVTGVITGGRHGDGDGVTYK---LL-YSDDGNNWTTYKDGNSKVFP--GNSDA--GTVVVNEFPPPIVA 116 (139)
T ss_pred ceeEeeccCcEEEEEEEecccCCCCcEEEEE---EE-EEeCCCCEeEEeCCCeEEEe--CccCC--CceEEEecCCCEEE
Confidence 4688999999999999885322234566533 34 899999997432 1231 11111 1245666765 589
Q ss_pred eEEEEEEE
Q psy16320 190 KYLKLQMY 197 (214)
Q Consensus 190 r~VKi~l~ 197 (214)
|||||...
T Consensus 117 RyvRi~p~ 124 (139)
T smart00231 117 RYIRILPT 124 (139)
T ss_pred EEEEEEEe
Confidence 99999987
No 5
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination. This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the
Probab=93.58 E-value=1.4 Score=35.79 Aligned_cols=100 Identities=16% Similarity=0.295 Sum_probs=65.6
Q ss_pred ccCcceeeecccccCCCccccccCCCCCcceEEeecCCCCCCCcEEEEEEcCceEEEeEEEEEEecccCCceeeeeEEEE
Q psy16320 71 LSGGLGQLTDGQIGADNFKMDAKSRNKGYEWIGWRNESFPYGKPVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHANV 150 (214)
Q Consensus 71 l~gGlGqLtDGi~G~dnf~~~~~~~~~g~~WVGW~n~~~~~~~~VeitFeF~~~rnfs~v~ih~~n~~~~~V~~f~~v~v 150 (214)
...|.-+|+|+-. +.| |+.+. ..+=.|++.|.+...++.|.+++.... -.-+.|++|.|
T Consensus 16 ~g~gv~~L~D~~~--~Ty---------------WQSDg---~qPH~I~i~f~k~~~i~~l~i~vd~~~-DeSYtP~~I~v 74 (139)
T cd08366 16 PGNGVDQLRDDSL--DTY---------------WQSDG---PQPHLINIQFSKKTDISAVALYLDYKL-DESYTPSKISI 74 (139)
T ss_pred CCCCHHHhcCCCC--Ccc---------------CCCCC---CCCEEEEEEecCCcEEEEEEEEEccCC-CCCCCCEEEEE
Confidence 3568889999755 223 22232 124678899999999999999997532 23467999998
Q ss_pred EEEeCCccccccceeeecCCCcccccceEEEEeCCC------ceeeEEEEEEE
Q psy16320 151 YLSLGGRQFSLEPIQFTYMPDTIMEKARNVTIKLHH------KQAKYLKLQMY 197 (214)
Q Consensus 151 ~fS~dG~~f~~~~~~~~~~~d~~~~~ar~vti~l~~------r~ar~VKi~l~ 197 (214)
+.-.+-.+........ ..+..-|+.|+|.+ ..+.+|+|.+.
T Consensus 75 ~~G~~~~dl~e~~~v~------l~~p~Gwv~i~l~~~~~~~~~~~~~iqi~I~ 121 (139)
T cd08366 75 RAGTSPHDLQEVRTVE------LEEPNGWVHIPLEDNRDGKPLRTFFLQIAIL 121 (139)
T ss_pred EEECCcCchhheEEEE------cCCCCEEEEEEccCCCCCCeeEEEEEEEEEe
Confidence 8876654443322111 11226899999976 45677777764
No 6
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.
Probab=88.90 E-value=2.4 Score=36.24 Aligned_cols=77 Identities=10% Similarity=0.140 Sum_probs=47.4
Q ss_pred cEEEEEEcCceEEEeEEEEEEecccCCceeeeeEEEEEEEeCCccccccceeeecCCCcccccceEEEEeCCCce-----
Q psy16320 114 PVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHANVYLSLGGRQFSLEPIQFTYMPDTIMEKARNVTIKLHHKQ----- 188 (214)
Q Consensus 114 ~VeitFeF~~~rnfs~v~ih~~n~~~~~V~~f~~v~v~fS~dG~~f~~~~~~~~~~~d~~~~~ar~vti~l~~r~----- 188 (214)
+=.|+++|.+...+..|.++++.... .-+.|++|.|+.-.+-.+...... .+ ..+..-||.|+|..-.
T Consensus 67 pH~I~i~f~k~v~I~~l~iyvd~~~D-eSYtPs~I~V~aG~~~~dl~e~~~-v~-----l~~p~GWv~i~l~~~~~~~~r 139 (193)
T PF03256_consen 67 PHWITIQFHKRVIISSLSIYVDYKQD-ESYTPSKISVRAGNSPHDLQEVKT-VE-----LEEPNGWVHIPLLDNRGNPLR 139 (193)
T ss_dssp SEEEEEEEEEEEEE-EEEEEEEHHHH-GGGSEEEEEEEEESSTTT-EEEEE-EE-----ECC-EEEEEEE-BSTTTSBEE
T ss_pred CEEEEEEEcCCcEEEEEEEEEccCcC-CCCCceEEEEEEeCCcCceEEEEE-EE-----ecCCCccEEEEeCCCCCCcEE
Confidence 46799999999999999999975222 125799999998766444432211 11 1223478999886433
Q ss_pred eeEEEEEEE
Q psy16320 189 AKYLKLQMY 197 (214)
Q Consensus 189 ar~VKi~l~ 197 (214)
+++|+|.+.
T Consensus 140 ~~~iqI~I~ 148 (193)
T PF03256_consen 140 CFFIQIAIL 148 (193)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 345555543
No 7
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.
Probab=88.37 E-value=6.5 Score=30.81 Aligned_cols=91 Identities=12% Similarity=0.159 Sum_probs=50.2
Q ss_pred cEEEEEEcCceEEEeEEEEEEecc----cCCceeeeeEEEEEEEeCCccccccce-eeecCCCcccccceEEEEeCCC-c
Q psy16320 114 PVEMVFEFDRVRNFTAMHLHINNY----YSKDIQVFSHANVYLSLGGRQFSLEPI-QFTYMPDTIMEKARNVTIKLHH-K 187 (214)
Q Consensus 114 ~VeitFeF~~~rnfs~v~ih~~n~----~~~~V~~f~~v~v~fS~dG~~f~~~~~-~~~~~~d~~~~~ar~vti~l~~-r 187 (214)
.-.++|+|.+.-.+++|.|.-... +++ .|+..+|+-+.+........+ .+++ +........+.|+-.. .
T Consensus 31 ~~~~~I~L~~~I~v~~v~i~h~~~~~~~~sS---apk~f~V~g~~~~~~~~~~~LG~f~y--~~~~~~~QtF~l~~~~~~ 105 (135)
T PF07738_consen 31 KGWLTIELSEPIYVTSVTIEHVEKSIAPFSS---APKDFEVWGSVDYPDEEWVLLGEFEY--DSDGNSIQTFPLPRPPRQ 105 (135)
T ss_dssp -EEEEEEEEEEEEEEEEEEE---GGGSG-TT---SB-EEEEEEESSSSTS--EEEEEEE----TTS-SEEEEE-SS--S-
T ss_pred ceEEEEEcCCcEEEEEEEEEEeccccCCcCC---CCcEEEEEEEecccccceeeeceEEE--cCCcCccEeeeeccCchh
Confidence 367999999999999999987666 554 489999999998775433333 5554 2222333444444433 2
Q ss_pred eeeEEEEEEEcC---CeeEEEEEEE
Q psy16320 188 QAKYLKLQMYFS---NKWLLISEIM 209 (214)
Q Consensus 188 ~ar~VKi~l~fa---~~Wl~iSEI~ 209 (214)
..|+||+++.-. ..|.-|.-|.
T Consensus 106 ~~~~i~l~i~sN~G~~~ytclyr~r 130 (135)
T PF07738_consen 106 PVRYIKLRILSNHGNEEYTCLYRFR 130 (135)
T ss_dssp -EEEEEEEE--BSS-SSEEEE-EEE
T ss_pred cCcEEEEEEEcCCCCCceEEEEEEE
Confidence 479999988752 3366555544
No 8
>PF13163 DUF3999: Protein of unknown function (DUF3999)
Probab=82.38 E-value=4 Score=38.75 Aligned_cols=69 Identities=16% Similarity=0.060 Sum_probs=48.7
Q ss_pred EEEeEEEEEEecccCCceeeeeEEEEEEEeCCccccccceeeecC-CCcccccceEEEEeCCCceeeEEEEEE
Q psy16320 125 RNFTAMHLHINNYYSKDIQVFSHANVYLSLGGRQFSLEPIQFTYM-PDTIMEKARNVTIKLHHKQAKYLKLQM 196 (214)
Q Consensus 125 rnfs~v~ih~~n~~~~~V~~f~~v~v~fS~dG~~f~~~~~~~~~~-~d~~~~~ar~vti~l~~r~ar~VKi~l 196 (214)
...+++.+...+....+ +.+++|+-|.|.++|........++ .....+..+.=+|+|....+||+||..
T Consensus 125 ~~l~~L~L~w~~~~~~~---~~~v~VeaSdDl~~W~~l~~~~~l~~L~~~~~~l~~~~I~L~~~~~rYLRl~~ 194 (429)
T PF13163_consen 125 EPLDALRLDWPQSNFNW---QARVSVEASDDLQHWRPLAGDAQLMDLSNGGQRLVQDRIELPGSNARYLRLTW 194 (429)
T ss_pred cchhheEEEeecCCCCc---eEEEEEEEecCcccceEccCCceEEEeccCCcceeeeeEccCCCCCceEEEEe
Confidence 37788888886655555 6678999999999997662221111 222233345668889999999999999
No 9
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2). This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo
Probab=71.19 E-value=33 Score=28.52 Aligned_cols=60 Identities=10% Similarity=0.046 Sum_probs=42.7
Q ss_pred cCcceeeecccccCCCc-cccccCCCCCcceEEeecCCCCCCCcEEEEEEcCceEEEeEEEEEEecccCCceeeeeEEEE
Q psy16320 72 SGGLGQLTDGQIGADNF-KMDAKSRNKGYEWIGWRNESFPYGKPVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHANV 150 (214)
Q Consensus 72 ~gGlGqLtDGi~G~dnf-~~~~~~~~~g~~WVGW~n~~~~~~~~VeitFeF~~~rnfs~v~ih~~n~~~~~V~~f~~v~v 150 (214)
..|.-+|+|| ++.| +++ .. .+.=-|.++|.+...+.++.+++.. .-.-+.|++|.|
T Consensus 37 ~~~~~~L~D~---~~TYWQSd----------------G~--q~~HwI~l~~~~~v~I~~L~i~vd~--~DeSY~Ps~I~V 93 (152)
T cd08664 37 ENQAKRLIDG---SGSYWQSS----------------GS--QGKHWIRLELHPDVLIHSLKIIVDP--ADSSYMPSLVVV 93 (152)
T ss_pred cccHHHhcCC---CCCeeccC----------------CC--CCceEEEEEECCCcEEEEEEEEecC--CCCCcCCceEEE
Confidence 4678899999 4444 553 21 2224478899999999999999983 334679999998
Q ss_pred EEEe
Q psy16320 151 YLSL 154 (214)
Q Consensus 151 ~fS~ 154 (214)
..-.
T Consensus 94 ~~G~ 97 (152)
T cd08664 94 SGGD 97 (152)
T ss_pred EecC
Confidence 8643
No 10
>PF14652 DUF4457: Domain of unknown function (DUF4457)
Probab=67.99 E-value=23 Score=32.57 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=43.1
Q ss_pred ccCcceeeecccccCCCccccccCCCCCcceEEeecCCCCCCCcEEEEEEcCceEEEeEEEEEEecccC
Q psy16320 71 LSGGLGQLTDGQIGADNFKMDAKSRNKGYEWIGWRNESFPYGKPVEMVFEFDRVRNFTAMHLHINNYYS 139 (214)
Q Consensus 71 l~gGlGqLtDGi~G~dnf~~~~~~~~~g~~WVGW~n~~~~~~~~VeitFeF~~~rnfs~v~ih~~n~~~ 139 (214)
-.+-|..|+||..=+.|= . +-|...... +....|+|+|.+...++.|+|.=.|...
T Consensus 52 d~r~l~~Lidg~~~T~d~-~--------~MWl~pf~~----~~~~~i~i~f~~~~~is~iRIWNYNks~ 107 (329)
T PF14652_consen 52 DPRTLDKLIDGVNLTTDD-E--------HMWLAPFSP----GKQHVITIRFPEPTSISGIRIWNYNKSR 107 (329)
T ss_pred CccceeEEECCeEccCcc-c--------ceEEeecCC----CCCEEEEEEeCCCceeeEEEEEcCCCCc
Confidence 345678999998876532 1 479888763 5578899999999999999998766544
No 11
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=65.89 E-value=69 Score=25.74 Aligned_cols=97 Identities=12% Similarity=0.130 Sum_probs=59.2
Q ss_pred cceeeecccccCCCccccccCCCCCcceEEeecCCCCCCCcEEEEEEcCceEEEeEEEEEEecccCCceeeeeEEEEEEE
Q psy16320 74 GLGQLTDGQIGADNFKMDAKSRNKGYEWIGWRNESFPYGKPVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHANVYLS 153 (214)
Q Consensus 74 GlGqLtDGi~G~dnf~~~~~~~~~g~~WVGW~n~~~~~~~~VeitFeF~~~rnfs~v~ih~~n~~~~~V~~f~~v~v~fS 153 (214)
|.-+|.||-..+ | |+.+.. .+.--|++.|.+...+..+.+++.- .-.-+.|++|.|+.-
T Consensus 15 gv~~L~D~~~~t--y---------------WQSdG~--qphh~i~l~f~k~v~i~~l~i~~~~--~DeSYtP~~I~V~~G 73 (129)
T cd08159 15 PVSRLTDGNYDT--Y---------------WQSDGS--QGSHWIRLFMKKDVLIRVLAIFVDM--ADSSYMPSLVVVYGG 73 (129)
T ss_pred cHHHhcCCCCCc--c---------------CCCCCC--CCCEEEEEEEcCCcEEEEEEEEecC--CCCCcCCcEEEEEec
Confidence 777888875422 2 333321 2234588899999999999999966 345678999998874
Q ss_pred eCCccccccceeeecCCCcccccceEEEEeCCC-ceeeEEEEEEE
Q psy16320 154 LGGRQFSLEPIQFTYMPDTIMEKARNVTIKLHH-KQAKYLKLQMY 197 (214)
Q Consensus 154 ~dG~~f~~~~~~~~~~~d~~~~~ar~vti~l~~-r~ar~VKi~l~ 197 (214)
.+ +......-.. ...+..-||+|.... ..+.||+|.+.
T Consensus 74 ~~---~~dL~e~~~v---~l~~p~Gwv~i~~~~~~~~~~iqI~I~ 112 (129)
T cd08159 74 HS---PSDLRELKDV---NIRPSNGWVALLEDDTLKCPYIEIRIK 112 (129)
T ss_pred CC---HHHhheeEEE---EecCCCceEEEEcCCcEEEEEEEEEEH
Confidence 43 3322211111 112224677776543 45677777664
No 12
>smart00136 LamNT Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.
Probab=62.23 E-value=29 Score=30.60 Aligned_cols=42 Identities=14% Similarity=0.010 Sum_probs=32.4
Q ss_pred cEEEEEEcCceEEEeEEEEEEecccCCceeeeeEEEEEEEeCCccccc
Q psy16320 114 PVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHANVYLSLGGRQFSL 161 (214)
Q Consensus 114 ~VeitFeF~~~rnfs~v~ih~~n~~~~~V~~f~~v~v~fS~dG~~f~~ 161 (214)
+|.||++|++.=.|+.|.+.+- .++ |+.+.+.=|.+|+.|..
T Consensus 87 ~VtitLdL~k~fevtyi~l~F~-s~R-----Pa~~i~erSd~G~tW~p 128 (238)
T smart00136 87 NVNLTLDLGKEFHVTYVILKFC-SPR-----PSLWILERSDFGKTWQP 128 (238)
T ss_pred cEEEEEecCCEEEEEEEEEEec-CCC-----CceEEEeecCCCCCCcE
Confidence 5999999999999999999986 333 55555666666888854
No 13
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue. Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.
Probab=59.73 E-value=33 Score=30.13 Aligned_cols=42 Identities=10% Similarity=-0.030 Sum_probs=32.2
Q ss_pred cEEEEEEcCceEEEeEEEEEEecccCCceeeeeEEEEEEEeCCccccc
Q psy16320 114 PVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHANVYLSLGGRQFSL 161 (214)
Q Consensus 114 ~VeitFeF~~~rnfs~v~ih~~n~~~~~V~~f~~v~v~fS~dG~~f~~ 161 (214)
+|.||++|++.=.|+.|.|.+- .++ |....+.=|.|+.+|+.
T Consensus 85 ~VtitLdL~~~f~v~~v~l~F~-spR-----P~~miierS~D~gtW~p 126 (237)
T PF00055_consen 85 NVTITLDLGKEFEVTYVILQFC-SPR-----PAAMIIERSSDFGTWQP 126 (237)
T ss_dssp -EEEEEEEEEEEEEEEEEEEES-S--------SEEEEEEESSTTSEEE
T ss_pred ceEEEEcccceEEEEEEEEEEc-CCC-----CCeEEEEEccCCCceeE
Confidence 7999999999999999999985 332 77777888888668864
No 14
>KOG3437|consensus
Probab=58.63 E-value=97 Score=26.55 Aligned_cols=52 Identities=10% Similarity=0.231 Sum_probs=38.3
Q ss_pred eecCCCCCCCcEEEEEEcCceEEEeEEEEEEecccCCceeeeeEEEEEEEeCCccc
Q psy16320 104 WRNESFPYGKPVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHANVYLSLGGRQF 159 (214)
Q Consensus 104 W~n~~~~~~~~VeitFeF~~~rnfs~v~ih~~n~~~~~V~~f~~v~v~fS~dG~~f 159 (214)
|..+. ..+=++.|-|.+.+.+..|.|+..=-+. .-+-|+++.|..+.+-+++
T Consensus 51 WqSdG---~~PH~i~I~F~K~~~I~~v~if~~f~~D-eSYtPs~i~I~~G~g~~dl 102 (184)
T KOG3437|consen 51 WQSDG---SQPHLINIQFHKRVDIQYVVIFLDFKQD-ESYTPSKIKIRAGNGFNDL 102 (184)
T ss_pred eecCC---CCCeEEEEEEEeEEEEEEEEEEEEEecc-cccCceeEEEEecCChhhe
Confidence 55554 2368899999999999999998843332 3357999999888765554
No 15
>KOG4276|consensus
Probab=58.04 E-value=89 Score=24.47 Aligned_cols=88 Identities=11% Similarity=0.091 Sum_probs=54.1
Q ss_pred EEEEEEcCceEEEeEEEEEEecccCCceeeeeEEEEEEEeCCccccccceeeecCCCcccccc-eEEEEeCC----Ccee
Q psy16320 115 VEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHANVYLSLGGRQFSLEPIQFTYMPDTIMEKA-RNVTIKLH----HKQA 189 (214)
Q Consensus 115 VeitFeF~~~rnfs~v~ih~~n~~~~~V~~f~~v~v~fS~dG~~f~~~~~~~~~~~d~~~~~a-r~vti~l~----~r~a 189 (214)
-=.+||++..-.-++-.+...+.+++.. -+.-.+.-|+||++|+...++. .|...-.+ -.-+-|+. ...-
T Consensus 8 awf~iDLG~~vip~~y~lrh~rgygRsa--lRnW~fQgS~DgktWt~l~vH~---DD~sl~epGstAtWpi~~a~~~~~f 82 (113)
T KOG4276|consen 8 AWFAIDLGLEVIPTAYTLRHARGYGRSA--LRNWKFQGSKDGKTWTDLRVHV---DDKSLCEPGSTATWPITAANDLLPF 82 (113)
T ss_pred eeEEEecCceEeeeeeeeeecccccHHH--hhheeeeccccCCcceeEEEEe---ccccccCCCccccccccCcccccce
Confidence 4466788877777777777777777653 3445678999999999876654 22211111 12222222 1234
Q ss_pred eEEEEEEEc-----CCeeEEEEE
Q psy16320 190 KYLKLQMYF-----SNKWLLISE 207 (214)
Q Consensus 190 r~VKi~l~f-----a~~Wl~iSE 207 (214)
||+||...- .--|++.|-
T Consensus 83 RffRi~q~G~nasgqThylscsg 105 (113)
T KOG4276|consen 83 RFFRIVQNGKNASGQTHYLSCSG 105 (113)
T ss_pred EEEEEEecCCCCCCccceeEeee
Confidence 888887765 256777764
No 16
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui
Probab=57.11 E-value=92 Score=25.18 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=43.0
Q ss_pred CcceeeecccccCCCccccccCCCCCcceEEeecCCCCCCCcEEEEEEcCceEEEeEEEEEEecccCCceeeeeEEEEEE
Q psy16320 73 GGLGQLTDGQIGADNFKMDAKSRNKGYEWIGWRNESFPYGKPVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHANVYL 152 (214)
Q Consensus 73 gGlGqLtDGi~G~dnf~~~~~~~~~g~~WVGW~n~~~~~~~~VeitFeF~~~rnfs~v~ih~~n~~~~~V~~f~~v~v~f 152 (214)
-|.-+|+||-.-+ =|+.+.. .++=-|+++|.+...+.++.+++. ..-.-+.|++|.|..
T Consensus 14 ~~~~~L~D~~~~t-----------------yWQSdG~--q~pH~I~i~f~k~v~I~~l~i~v~--~~DeSYtPs~I~V~~ 72 (131)
T cd08665 14 HRANKLTDGNPKT-----------------YWESNGS--TGSHYINIHMHRGVVIRQLYMLVA--SEDSSYMPARVVVLG 72 (131)
T ss_pred ccHHHhhcCCCCc-----------------eEccCCC--CCCeEEEEEECCCcEEEEEEEEec--CCCCCcCCeeEEEEe
Confidence 3666888875422 2444431 235669999999999999999994 444578999999876
Q ss_pred Ee
Q psy16320 153 SL 154 (214)
Q Consensus 153 S~ 154 (214)
-.
T Consensus 73 G~ 74 (131)
T cd08665 73 GD 74 (131)
T ss_pred cC
Confidence 43
No 17
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=52.89 E-value=86 Score=22.97 Aligned_cols=79 Identities=15% Similarity=0.274 Sum_probs=44.6
Q ss_pred EEEEEEecccCCceeeeeEEEEEEEeCCccccccceeeecCCCcccccceEEEEeCCCceeeEEEEEEEc-----CCeeE
Q psy16320 129 AMHLHINNYYSKDIQVFSHANVYLSLGGRQFSLEPIQFTYMPDTIMEKARNVTIKLHHKQAKYLKLQMYF-----SNKWL 203 (214)
Q Consensus 129 ~v~ih~~n~~~~~V~~f~~v~v~fS~dG~~f~~~~~~~~~~~d~~~~~ar~vti~l~~r~ar~VKi~l~f-----a~~Wl 203 (214)
.|+|++.+....+ +.+.|++..-|++=...+............+...+.+.+...+|.-.+|++.. .+.|
T Consensus 2 ~v~v~Tg~~~~aG----T~~~V~i~l~G~~g~s~~~~l~~~~~~~~g~~d~F~i~~~~~lG~i~~i~i~~~~~~~~~~W- 76 (113)
T PF01477_consen 2 RVTVKTGDERGAG----TDANVYITLYGSKGKSGEIELLDPSGFNFGSTDTFTIETPEDLGEIQKIRIWHDGSGPSPSW- 76 (113)
T ss_dssp EEEEEEESSTEEE----ESSEEEEEEEETTEEEEEEEEEEEEETSTTEEEEEEEEESSCGCSEEEEEEEEESSSSSSEE-
T ss_pred EEEEEECCCCCCC----cCCeEEEEEEECCCCcceEEEeeeeecccCceEEeeeeecccCCCCcEEEEEEccCCCccce-
Confidence 4677776655543 23345566555433323222211111111455678888866788776666665 5888
Q ss_pred EEEEEEEEe
Q psy16320 204 LISEIMFQS 212 (214)
Q Consensus 204 ~iSEI~F~S 212 (214)
+++.|.+.+
T Consensus 77 ~l~~V~V~~ 85 (113)
T PF01477_consen 77 YLDSVVVTD 85 (113)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEe
Confidence 788888765
No 18
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination. This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te
Probab=51.87 E-value=1.3e+02 Score=24.33 Aligned_cols=61 Identities=11% Similarity=0.163 Sum_probs=43.5
Q ss_pred cceeeecccccCCCccccccCCCCCcceEEeecCCCCCCCcEEEEEEcCceEEEeEEEEEEecccCCceeeeeEEEEEEE
Q psy16320 74 GLGQLTDGQIGADNFKMDAKSRNKGYEWIGWRNESFPYGKPVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHANVYLS 153 (214)
Q Consensus 74 GlGqLtDGi~G~dnf~~~~~~~~~g~~WVGW~n~~~~~~~~VeitFeF~~~rnfs~v~ih~~n~~~~~V~~f~~v~v~fS 153 (214)
|.-+|+||-.- .| |+.+.. .++=-|+|+|.+...+.++.+++. +.-.-+.|++|.|+.-
T Consensus 16 gv~~L~D~~~~--ty---------------WQSDG~--q~pH~I~i~f~k~v~i~~l~l~vd--~~DeSYtP~~I~V~~G 74 (131)
T cd08365 16 DASRLTDGNTS--TY---------------WQSDGS--QGSHWIRLKMKPDVLVRHLSLAVD--ATDSSYMPQRVVVAGG 74 (131)
T ss_pred hHHHhhcCCCC--ce---------------EccCCC--CCCEEEEEEEcCCcEEEEEEEEec--CCCCCCCCcEEEEEec
Confidence 77889988552 22 333321 223579999999999999999996 3444678999998875
Q ss_pred eC
Q psy16320 154 LG 155 (214)
Q Consensus 154 ~d 155 (214)
.+
T Consensus 75 ~~ 76 (131)
T cd08365 75 RS 76 (131)
T ss_pred CC
Confidence 44
No 19
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=50.77 E-value=1.3e+02 Score=24.23 Aligned_cols=77 Identities=5% Similarity=-0.064 Sum_probs=45.8
Q ss_pred cEEEEEEcCceEEEeEEEEEEecccCCceeeeeEEEEEEEeCCccccccceeeecCCCcccccceEEEEeCC-CceeeEE
Q psy16320 114 PVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHANVYLSLGGRQFSLEPIQFTYMPDTIMEKARNVTIKLH-HKQAKYL 192 (214)
Q Consensus 114 ~VeitFeF~~~rnfs~v~ih~~n~~~~~V~~f~~v~v~fS~dG~~f~~~~~~~~~~~d~~~~~ar~vti~l~-~r~ar~V 192 (214)
+=-|+|+|.+...+.++.+++. ..-.-+.|++|+|+.-. .+......... +...+-.-||.|... ...+.+|
T Consensus 36 pH~I~i~f~~~v~i~~l~i~v~--~~DeSYtPs~I~I~~G~---~~~dL~e~~~v--~l~~~~~Gwv~l~~~~~~~~~~i 108 (131)
T cd08667 36 SHWIRLKMKPDVVLRHLSIAVA--ATDQSYMPQQVTVSVGR---SASSLQEVRDV--HIPSNVTGYVTLLENANISYLVV 108 (131)
T ss_pred CeEEEEEecCCeEEEEEEEEEc--CCCCCcCCcEEEEEecC---CHhhheeeEEE--EcCCCCceeEEEEcCCceEEEEE
Confidence 4578999999999999999996 33345789999987733 23222211110 011111257777653 2445666
Q ss_pred EEEEE
Q psy16320 193 KLQMY 197 (214)
Q Consensus 193 Ki~l~ 197 (214)
+|.+.
T Consensus 109 qI~I~ 113 (131)
T cd08667 109 QINIK 113 (131)
T ss_pred EEEeH
Confidence 66553
No 20
>smart00607 FTP eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domain.
Probab=50.38 E-value=1.4e+02 Score=24.40 Aligned_cols=90 Identities=11% Similarity=0.094 Sum_probs=52.9
Q ss_pred EEEEcCceEEEeEEEEEEeccc-CCceeeeeEEEEEEEeCCcc-ccccceeeecCCCcccccceEEEEeCCC-ceeeEEE
Q psy16320 117 MVFEFDRVRNFTAMHLHINNYY-SKDIQVFSHANVYLSLGGRQ-FSLEPIQFTYMPDTIMEKARNVTIKLHH-KQAKYLK 193 (214)
Q Consensus 117 itFeF~~~rnfs~v~ih~~n~~-~~~V~~f~~v~v~fS~dG~~-f~~~~~~~~~~~d~~~~~ar~vti~l~~-r~ar~VK 193 (214)
-.+|+++...+.+|.|.--.+- ...+ .-++|.+...-.. ....+.-.. ....+.-..+++.... -.||||.
T Consensus 54 W~VDL~~~~~V~~V~I~NR~Dcc~~rl---~~~eI~IG~s~~~~~~~n~~c~~---~~~~~~~~~~~~~c~~~~~GRYV~ 127 (151)
T smart00607 54 WRVDLLQYMTIHSVTITNRGDCCGERI---TGARILIGNSLENGGINNPNCST---GGLMAGGETKTFCCPPPMIGRYVT 127 (151)
T ss_pred EEEeCCCeEEeeEEEEecCCCCCCccc---cceEEEECCcccccCCcCcccCC---CceeCCCceEEEeCCCCCeeEEEE
Confidence 4457778888999888432221 1222 2345555543211 122222110 0011222566777764 7899999
Q ss_pred EEEEcCCeeEEEEEEEEEe
Q psy16320 194 LQMYFSNKWLLISEIMFQS 212 (214)
Q Consensus 194 i~l~fa~~Wl~iSEI~F~S 212 (214)
|+|.-..+-|=|-||....
T Consensus 128 i~Lpg~~~~L~LCEVeV~~ 146 (151)
T smart00607 128 VYLPKPNESLILCEVEVNA 146 (151)
T ss_pred EEecCCCccEEEeEEEEcc
Confidence 9999988999999998754
No 21
>PF13163 DUF3999: Protein of unknown function (DUF3999)
Probab=50.31 E-value=64 Score=30.69 Aligned_cols=77 Identities=10% Similarity=0.173 Sum_probs=52.5
Q ss_pred EEEEEEcCceEEEeEEEEEEecccCCceeeeeEEEEEEE-eCCccccccc--eeeecCCCcccccceEEEEeCCCceeeE
Q psy16320 115 VEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHANVYLS-LGGRQFSLEP--IQFTYMPDTIMEKARNVTIKLHHKQAKY 191 (214)
Q Consensus 115 VeitFeF~~~rnfs~v~ih~~n~~~~~V~~f~~v~v~fS-~dG~~f~~~~--~~~~~~~d~~~~~ar~vti~l~~r~ar~ 191 (214)
=+++|++...-.+++|+|+..+... ...|+|+.. .....|+... +.|.+..+. ...++=.+.|.....|+
T Consensus 236 ~~~~~~lp~~~Pv~~l~I~l~~~N~-----~~pv~i~~R~~~~~~W~~l~~~~lyrl~~~g--~~~~s~~l~l~~~~~r~ 308 (429)
T PF13163_consen 236 GEYVFRLPGALPVSRLRINLPQPNT-----VRPVTIESRSDADQPWRPLASGVLYRLQQDG--QEQSSPPLALPGTPVRY 308 (429)
T ss_pred ceEEEECCCCcceeEEEEecCCCCc-----EEEEEEEEEcCCCCCCeEeccEEEEEeecCC--CcccCCcEecCCCccee
Confidence 4688999999999999999987521 334555553 3455887654 356554443 33344456666888999
Q ss_pred EEEEEEc
Q psy16320 192 LKLQMYF 198 (214)
Q Consensus 192 VKi~l~f 198 (214)
+||++.+
T Consensus 309 ~Rl~v~n 315 (429)
T PF13163_consen 309 WRLQVDN 315 (429)
T ss_pred EEEEEec
Confidence 9999987
No 22
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=32.42 E-value=43 Score=29.20 Aligned_cols=25 Identities=12% Similarity=0.369 Sum_probs=22.3
Q ss_pred eeEEEEEEEcCCeeEEEEEEEEEec
Q psy16320 189 AKYLKLQMYFSNKWLLISEIMFQSV 213 (214)
Q Consensus 189 ar~VKi~l~fa~~Wl~iSEI~F~S~ 213 (214)
--||||-||..+.-|.+.||||-..
T Consensus 195 f~fvRVDlY~~~~~iyFGElTf~p~ 219 (239)
T PF14305_consen 195 FPFVRVDLYNVDGKIYFGELTFTPG 219 (239)
T ss_pred CCEEEEEEEEeCCcEEEEeeecCCC
Confidence 4599999999999999999999653
No 23
>COG2430 Uncharacterized conserved protein [Function unknown]
Probab=31.29 E-value=3.5e+02 Score=24.10 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=40.9
Q ss_pred eeeeeEEEEEEEeCCcc-----ccccceeeecCCCcccccc-e-----EEEEeCCCceeeEEEEEEEc-CCeeEEEEEEE
Q psy16320 142 IQVFSHANVYLSLGGRQ-----FSLEPIQFTYMPDTIMEKA-R-----NVTIKLHHKQAKYLKLQMYF-SNKWLLISEIM 209 (214)
Q Consensus 142 V~~f~~v~v~fS~dG~~-----f~~~~~~~~~~~d~~~~~a-r-----~vti~l~~r~ar~VKi~l~f-a~~Wl~iSEI~ 209 (214)
+++|-.+.|+.|..|+. |......+.......+.-. | ...+|....-.--.|+++.+ ++.|..||-|.
T Consensus 87 l~vPVdiaV~~~~~g~~~lvDvF~~~~~kyaLYG~p~~GvvcRy~~s~l~~~P~~~~~egv~kl~v~N~sd~wv~IsrvV 166 (236)
T COG2430 87 LKVPVDIAVYASAKGEPTLVDVFGPGKEKYALYGPPENGVVCRYWISELYERPENPPGEGVAKLTVVNTSDEWVTISRVV 166 (236)
T ss_pred EEeeEEEEEEEcCCCCceEEEEeCCCCeeEEEECCCCCceEEEEEeeeeeecCCCCcccceEEEEEEecCCCeEEEEEEE
Confidence 45677778888877652 2222223333332222221 2 22444434434567788777 69999999999
Q ss_pred EEe
Q psy16320 210 FQS 212 (214)
Q Consensus 210 F~S 212 (214)
|.+
T Consensus 167 fp~ 169 (236)
T COG2430 167 FPM 169 (236)
T ss_pred eec
Confidence 975
No 24
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=30.25 E-value=3e+02 Score=22.34 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=44.4
Q ss_pred ccCcceeeecccccCCCccccccCCCCCcceEEeecCCCCCCCcEEEEEEcCceEEEeEEEEEEecccCCceeeeeEEEE
Q psy16320 71 LSGGLGQLTDGQIGADNFKMDAKSRNKGYEWIGWRNESFPYGKPVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHANV 150 (214)
Q Consensus 71 l~gGlGqLtDGi~G~dnf~~~~~~~~~g~~WVGW~n~~~~~~~~VeitFeF~~~rnfs~v~ih~~n~~~~~V~~f~~v~v 150 (214)
...|.-+|+||-.-+ | |+.+.. .++=-|+++|.+...+.++.+++. +.-.-+.|++|.|
T Consensus 17 ~g~gv~~L~D~~~~t--y---------------WQSdG~--qgpH~I~l~f~~~v~i~~l~i~v~--~~DeSYtP~~I~V 75 (134)
T cd08666 17 DDFNVSCLTDGDPDT--Y---------------WESDGS--QGQHWIRLHMKKGTIIKKLLLTVD--ATDDNYMPKRVAV 75 (134)
T ss_pred CCCCHHHhccCCCCc--c---------------EecCCC--CCCeEEEEEECCCcEeeEEEEEec--CCCCCcCCcEEEE
Confidence 345778899886522 2 333321 335668999999999999999885 3456688999998
Q ss_pred EEEe
Q psy16320 151 YLSL 154 (214)
Q Consensus 151 ~fS~ 154 (214)
+.-.
T Consensus 76 ~~G~ 79 (134)
T cd08666 76 YGGE 79 (134)
T ss_pred EecC
Confidence 8744
No 25
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=30.03 E-value=2.4e+02 Score=28.67 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=41.8
Q ss_pred EEeCCc-cccccceeeecCCCccccc---ceEEEEeCCCceeeEEEEEEEcC------CeeEEEEEEEEEe
Q psy16320 152 LSLGGR-QFSLEPIQFTYMPDTIMEK---ARNVTIKLHHKQAKYLKLQMYFS------NKWLLISEIMFQS 212 (214)
Q Consensus 152 fS~dG~-~f~~~~~~~~~~~d~~~~~---ar~vti~l~~r~ar~VKi~l~fa------~~Wl~iSEI~F~S 212 (214)
.|.||. +|...+......+.....+ =+..+++|..-.||=|+|+|... ..=++||.|.+..
T Consensus 390 vStdGg~Twt~~~g~~~~~~~~~~~~sg~Wv~~~~DLSayAGqtV~LrFrY~TD~~v~~~G~~vDdi~v~~ 460 (645)
T PF05547_consen 390 VSTDGGKTWTPLPGNTTGNGNPNGGSSGGWVDASFDLSAYAGQTVQLRFRYVTDGGVAGRGFYVDDIRVTA 460 (645)
T ss_pred EEcCCCceeEecCccccccCCCCCCCccceeEeEeccccccCCeEEEEEEEEcCCCccCCcEEEEEEEEEE
Confidence 788865 7887776443333322222 25678888888899999999873 4557899998864
No 26
>PF10827 DUF2552: Protein of unknown function (DUF2552) ; InterPro: IPR020157 This entry contains proteins with no known function.
Probab=27.85 E-value=42 Score=24.68 Aligned_cols=13 Identities=38% Similarity=0.948 Sum_probs=12.1
Q ss_pred CeeEEEEEEEEEe
Q psy16320 200 NKWLLISEIMFQS 212 (214)
Q Consensus 200 ~~Wl~iSEI~F~S 212 (214)
|-||+=||++|+.
T Consensus 43 DVWLLQdEmTFet 55 (79)
T PF10827_consen 43 DVWLLQDEMTFET 55 (79)
T ss_pred ceEEEecceeEee
Confidence 8899999999986
No 27
>COG5156 DOC1 Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]
Probab=26.58 E-value=3.2e+02 Score=23.22 Aligned_cols=45 Identities=18% Similarity=0.343 Sum_probs=32.6
Q ss_pred eecCCCCCCCcEEEEEEcCceEEEeEEEEEEecccCCceeeeeEEEEEE
Q psy16320 104 WRNESFPYGKPVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSHANVYL 152 (214)
Q Consensus 104 W~n~~~~~~~~VeitFeF~~~rnfs~v~ih~~n~~~~~V~~f~~v~v~f 152 (214)
|..+. ..+=.|-|-|++.|.+..|.++..=-+ -.-+.|+.+.|+-
T Consensus 55 WqsDg---~qPH~i~I~F~kr~~I~~v~lfls~t~-DeSYtPs~i~v~a 99 (189)
T COG5156 55 WQSDG---VQPHSIQISFDKRRYIQSVQLFLSFTQ-DESYTPSKIGVRA 99 (189)
T ss_pred hccCC---CCCceEEEEEeEEEeeeeehhhhhhhc-ccccCcceeEEec
Confidence 55554 346789999999999999998763222 2456799888775
No 28
>smart00698 MORN Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
Probab=26.43 E-value=26 Score=20.16 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=13.3
Q ss_pred cccCccccccccCcceeee
Q psy16320 61 TYDGVVEDGLLSGGLGQLT 79 (214)
Q Consensus 61 tYDG~~~~~~l~gGlGqLt 79 (214)
+|+|.+..+ +..|.|.++
T Consensus 2 ~Y~G~w~~g-~~hG~G~~~ 19 (26)
T smart00698 2 RYEGEWRNG-KRHGRGVYT 19 (26)
T ss_pred eEEEEEECC-eEEeeEEEE
Confidence 588888887 666777655
No 29
>cd00602 IPT_TF IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa). The IPT domains in these proteins are involved in DNA binding. Most NF-kappaB/Rel proteins form homo- and heterodimers, while NFAT proteins are largely monomeric (with TonEBP being an exception). While the majority of sequence-specific DNA binding elements are found in the N-terminal domain, several are found in the IPT domain in loops adjacent to, and including, the linker region.
Probab=22.14 E-value=2.3e+02 Score=21.68 Aligned_cols=56 Identities=23% Similarity=0.226 Sum_probs=39.0
Q ss_pred EEEEEEcCceE-EEeEEEEEEecccCCceeeeeEEEEEEEeCCccccccceeeecCC
Q psy16320 115 VEMVFEFDRVR-NFTAMHLHINNYYSKDIQVFSHANVYLSLGGRQFSLEPIQFTYMP 170 (214)
Q Consensus 115 VeitFeF~~~r-nfs~v~ih~~n~~~~~V~~f~~v~v~fS~dG~~f~~~~~~~~~~~ 170 (214)
.|+.-+|+... .-.+|.+.+--....+|.-|-+|.+++...-+.-.++|..|+|.|
T Consensus 45 WE~~~~f~~~dv~q~aiv~~tP~y~~~~i~~pV~V~i~L~r~~~~~~S~~~~FtY~P 101 (101)
T cd00602 45 WEAEAMFRQEDVRQVAIVFKTPPYHNKWITRPVQVPIQLVRPDDRKRSEPLTFTYTP 101 (101)
T ss_pred EEEEEEECHHHceEeEEEecCCCcCCCCccccEEEEEEEEeCCCCeecCCcCeEEcC
Confidence 55555555544 557788888888888888898888888876334444777776654
No 30
>KOG3516|consensus
Probab=21.67 E-value=99 Score=33.61 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=28.7
Q ss_pred cEEEEEEcCceEEEeEEEEE----EecccCCceeeeeEEEEEEEeCCcccccc
Q psy16320 114 PVEMVFEFDRVRNFTAMHLH----INNYYSKDIQVFSHANVYLSLGGRQFSLE 162 (214)
Q Consensus 114 ~VeitFeF~~~rnfs~v~ih----~~n~~~~~V~~f~~v~v~fS~dG~~f~~~ 162 (214)
+--++++|.+.+.+++|.++ ..|..+ .....+|..|..|+..
T Consensus 74 ~~wlq~dLg~~~ev~aVatqg~~~Sddwvt-------~y~l~~sD~g~~w~~y 119 (1306)
T KOG3516|consen 74 NQWLQLDLGKRMEVTAVATQGRYGSDDWVT-------SYILQYSDPGRNWKTY 119 (1306)
T ss_pred cceeeeccCCceeeEEEeeccccCcchHHH-------HHHHhccCCccceEEE
Confidence 44578999999999999987 333332 3346677777777554
Done!