RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16320
         (214 letters)



>d1imhc1 b.1.18.1 (C:368-468) T-cell transcription factor NFAT5
           (TONEBP) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 101

 Score = 31.3 bits (71), Expect = 0.025
 Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 137 YYSKDIQVFSHANVYLSLGGRQFSLEPIQFTYMPD 171
           Y+ + I +     +Y+     +   +   FTY PD
Sbjct: 68  YHDQHITLPVSVGIYVVTNAGRSH-DVQPFTYTPD 101


>d1hc1a3 b.1.18.3 (A:399-653) Arthropod hemocyanin, C-terminal
           domain {Spiny lobster (Panulirus interruptus) [TaxId:
           6735]}
          Length = 255

 Score = 30.6 bits (69), Expect = 0.097
 Identities = 7/52 (13%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 96  NKGYEWIGWRNESFPYGKPVEMVFEFDRVRNFTAMHLHINNYYSKDIQVFSH 147
              +   G   E++P  +P  + +  +R      +   ++N     +++  H
Sbjct: 205 GGTHAQCGVHGEAYPDNRP--LGYPLERRIPDERVIDGVSNIKHVVVKIVHH 254


>d1p7hl1 b.1.18.1 (L:576-678) T-cell transcription factor NFAT1
           (NFATC2) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 103

 Score = 29.5 bits (66), Expect = 0.11
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 116 EMVFEFDR-VRNFTAMHLHINNYYSKDIQVFSHANVYLSLGGRQFSLEPIQFTYMP 170
           EM    D+       + + I  Y +K I+     N Y+  G R+ S +P  FTY P
Sbjct: 48  EMEATVDKDKSQPNMLFVEIPEYRNKHIRTPVKVNFYVINGKRKRS-QPQHFTYHP 102


>d1gjia1 b.1.18.1 (A:182-281) p65 subunit of NF-kappa B (NFKB),
           dimerization domain {Chicken (Gallus gallus), C-rel
           [TaxId: 9031]}
          Length = 100

 Score = 28.9 bits (65), Expect = 0.16
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 137 YYSKDIQVFSHANVYLSLGGRQFSLEPIQFTYMPD 171
            + +DI       + L     Q   EP+ F Y+PD
Sbjct: 66  PFLRDITEPITVKMQLRRPSDQEVSEPMDFRYLPD 100


>d1llaa3 b.1.18.3 (A:380-628) Arthropod hemocyanin, C-terminal
           domain {Horseshoe crab (Limulus polyphemus) [TaxId:
           6850]}
          Length = 249

 Score = 29.4 bits (66), Expect = 0.24
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 96  NKGYEWIGWRNESFPYGKPVEMVFEFDR-VRNFTAMHLHINNYYSKDIQVFSH 147
                + G R+  +P  KP  M F FDR +          NN + KDI++  H
Sbjct: 198 VDAVSYCGARDHKYPDKKP--MGFPFDRPIHTEHISDFLTNNMFIKDIKIKFH 248


>d1u36a_ b.1.18.1 (A:) p50 subunit of NF-kappa B transcription
           factor {Human (Homo sapiens) [TaxId: 9606]}
          Length = 104

 Score = 28.5 bits (64), Expect = 0.25
 Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 2/62 (3%)

Query: 112 GKPVEMVFEFDRVRNFTAMHLHINN--YYSKDIQVFSHANVYLSLGGRQFSLEPIQFTYM 169
           G   E   +F          +      Y   +I   +   V L       + EP  F Y 
Sbjct: 43  GGVWEGFGDFSPTDVHRQFAICFKTPKYKDVNITKPASVFVQLRRKSDLETSEPKPFLYY 102

Query: 170 PD 171
           P+
Sbjct: 103 PE 104


>d1my7a_ b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB),
           dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 107

 Score = 28.1 bits (63), Expect = 0.33
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 111 YGKPVEMVFEFDRVRNFTAMHLHINN--YYSKDIQVFSHANVYLSLGGRQFSLEPIQFTY 168
            G   E    F +      + +      Y    +Q     ++ L     +   EP++F Y
Sbjct: 39  TGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQY 98

Query: 169 MPD 171
           +PD
Sbjct: 99  LPD 101


>d1lnla2 b.112.1.1 (A:305-405) C-terminal domain of mollusc
           hemocyanin {Mollusca (Rapana thomasiana) [TaxId: 29165]}
          Length = 101

 Score = 25.4 bits (56), Expect = 2.6
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 112 GKPVEMVFEFDRVRNF------TAMHLHINNYYSKDIQVFSHANVYLS 153
           G  +E  ++FDR+  +       +  L +++ +   I   S  N  +S
Sbjct: 40  GGSLETPWQFDRLYKYEITDVLESKGLDVHDVFDIKITQTSWDNEDIS 87


>d1js8a2 b.112.1.1 (A:2792-2892) C-terminal domain of mollusc
           hemocyanin {Giant octopus (Octopus dofleini) [TaxId:
           267067]}
          Length = 101

 Score = 25.3 bits (56), Expect = 2.6
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 6/48 (12%)

Query: 112 GKPVEMVFEFDRVRNF------TAMHLHINNYYSKDIQVFSHANVYLS 153
           G   EM + FDR+  +        + L  ++ +   + +       LS
Sbjct: 40  GGEHEMFWAFDRLFKYDITTSLKHLRLDAHDDFDIKVTIKGIDGHVLS 87


>d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 101

 Score = 24.6 bits (54), Expect = 4.3
 Identities = 8/34 (23%), Positives = 12/34 (35%)

Query: 137 YYSKDIQVFSHANVYLSLGGRQFSLEPIQFTYMP 170
           Y+   I+      + L         +  QFTY P
Sbjct: 68  YHKMKIERPVTVFLQLKRKRGGDVSDSKQFTYYP 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0392    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 793,677
Number of extensions: 34398
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 13
Length of query: 214
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 132
Effective length of database: 1,281,736
Effective search space: 169189152
Effective search space used: 169189152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)