BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16321
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 151 bits (381), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/81 (90%), Positives = 76/81 (93%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ QIQEIKESVELPLTHPE YEEMGIKPPKGVILYG PGTGKTLLAKAVANQTSATF
Sbjct: 185 GGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF 244
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
LR+VGSELIQKYLGDGP+L R
Sbjct: 245 LRIVGSELIQKYLGDGPRLCR 265
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 73/81 (90%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ Q+QEI+E VELPL HPE +E++GI+PPKG++LYGPPGTGKTLLAKAVA +T+ATF
Sbjct: 20 GGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF 79
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSEL++K++G+G LV+
Sbjct: 80 IRVVGSELVKKFIGEGASLVK 100
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 121 bits (304), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 67/81 (82%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LD+Q QEI+E+VELPL + YE++GI PP+GV+LYGPPGTGKT+L KAVAN T A F
Sbjct: 175 GGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RV GSE + KYLG+GP++VR
Sbjct: 235 IRVNGSEFVHKYLGEGPRMVR 255
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 116 bits (290), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 67/85 (78%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L QI+EIKE +ELP+ HPE +E +GI PKGVILYGPPGTGKTLLA+AVA+ T F
Sbjct: 151 GGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF 210
Query: 72 LRVVGSELIQKYLGDGPKLVRVALV 96
+RV G+EL+QKY+G+G ++VR V
Sbjct: 211 IRVSGAELVQKYIGEGSRMVRELFV 235
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 67/81 (82%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G QI++++E VELPL PE + +GI PPKG++LYGPPGTGKTL A+AVAN+T ATF
Sbjct: 212 GGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF 271
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RV+GSEL+QKY+G+G ++VR
Sbjct: 272 IRVIGSELVQKYVGEGARMVR 292
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 65/84 (77%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LD QI+E+ E++ LP+ + +++MGI+ PKG ++YGPPGTGKTLLA+A A QT+ATF
Sbjct: 184 GGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF 243
Query: 72 LRVVGSELIQKYLGDGPKLVRVAL 95
L++ +L+Q Y+G+G KLVR A
Sbjct: 244 LKLAAPQLVQMYIGEGAKLVRDAF 267
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 61/81 (75%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L QI+E++E +ELPL +PE ++ +GIKPPKGV+LYGPPGTGKTLLAKAVA A F
Sbjct: 184 GGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF 243
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+ S ++ KY+G+ +++R
Sbjct: 244 IFSPASGIVDKYIGESARIIR 264
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 94.0 bits (232), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 61/91 (67%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G Q+ +IKE VELPL HP ++ +G+KPP+G++LYGPPGTGKTL+A+AVAN+T A F
Sbjct: 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 266
Query: 72 LRVVGSELIQKYLGDGPKLVRVALVPEVRNG 102
+ G E++ K G+ +R A +N
Sbjct: 267 FLINGPEIMSKLAGESESNLRKAFEEAEKNA 297
Score = 80.1 bits (196), Expect = 3e-16, Method: Composition-based stats.
Identities = 36/81 (44%), Positives = 54/81 (66%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ +E++E V+ P+ HP+ + + G+ P KGV+ YGPPG GKTLLAKA+AN+ A F
Sbjct: 480 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+ + G EL+ + G+ VR
Sbjct: 540 ISIKGPELLTMWFGESEANVR 560
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 94.0 bits (232), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 61/91 (67%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G Q+ +IKE VELPL HP ++ +G+KPP+G++LYGPPGTGKTL+A+AVAN+T A F
Sbjct: 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 266
Query: 72 LRVVGSELIQKYLGDGPKLVRVALVPEVRNG 102
+ G E++ K G+ +R A +N
Sbjct: 267 FLINGPEIMSKLAGESESNLRKAFEEAEKNA 297
Score = 80.1 bits (196), Expect = 3e-16, Method: Composition-based stats.
Identities = 36/81 (44%), Positives = 54/81 (66%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ +E++E V+ P+ HP+ + + G+ P KGV+ YGPPG GKTLLAKA+AN+ A F
Sbjct: 480 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+ + G EL+ + G+ VR
Sbjct: 540 ISIKGPELLTMWFGESEANVR 560
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 94.0 bits (232), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 61/91 (67%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G Q+ +IKE VELPL HP ++ +G+KPP+G++LYGPPGTGKTL+A+AVAN+T A F
Sbjct: 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 266
Query: 72 LRVVGSELIQKYLGDGPKLVRVALVPEVRNG 102
+ G E++ K G+ +R A +N
Sbjct: 267 FLINGPEIMSKLAGESESNLRKAFEEAEKNA 297
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 94.0 bits (232), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 61/91 (67%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G Q+ +IKE VELPL HP ++ +G+KPP+G++LYGPPGTGKTL+A+AVAN+T A F
Sbjct: 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 266
Query: 72 LRVVGSELIQKYLGDGPKLVRVALVPEVRNG 102
+ G E++ K G+ +R A +N
Sbjct: 267 FLINGPEIMSKLAGESESNLRKAFEEAEKNA 297
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 93.6 bits (231), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 61/91 (67%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G Q+ +IKE VELPL HP ++ +G+KPP+G++LYGPPGTGKTL+A+AVAN+T A F
Sbjct: 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 266
Query: 72 LRVVGSELIQKYLGDGPKLVRVALVPEVRNG 102
+ G E++ K G+ +R A +N
Sbjct: 267 FLINGPEIMSKLAGESESNLRKAFEEAEKNA 297
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 93.6 bits (231), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 61/91 (67%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G Q+ +IKE VELPL HP ++ +G+KPP+G++LYGPPGTGKTL+A+AVAN+T A F
Sbjct: 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 266
Query: 72 LRVVGSELIQKYLGDGPKLVRVALVPEVRNG 102
+ G E++ K G+ +R A +N
Sbjct: 267 FLINGPEIMSKLAGESESNLRKAFEEAEKNA 297
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 55/79 (69%), Gaps = 3/79 (3%)
Query: 15 DVQIQEIKESVELPLTHPEYYEEMGIKPP-KGVILYGPPGTGKTLLAKAVANQTSATFLR 73
DV Q ++E V LP PE + G++ P KG++L+GPPG GKTLLA+AVA + SATFL
Sbjct: 27 DVAKQALQEMVILPSVRPELF--TGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLN 84
Query: 74 VVGSELIQKYLGDGPKLVR 92
+ + L KY+GDG KLVR
Sbjct: 85 ISAASLTSKYVGDGEKLVR 103
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 54/81 (66%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ +E++E V+ P+ HP+ + + G+ P KGV+ YGPPG GKTLLAKA+AN+ A F
Sbjct: 18 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 77
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+ + G EL+ + G+ VR
Sbjct: 78 ISIKGPELLTMWFGESEANVR 98
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 52/74 (70%), Gaps = 3/74 (4%)
Query: 21 IKESVELPLTHPEYYEEMGIK-PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 79
IKE V P+ P+ + G++ PPKG++L+GPPGTGKTL+ K +A+Q+ ATF + S L
Sbjct: 96 IKEIVVWPMLRPDIF--TGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSL 153
Query: 80 IQKYLGDGPKLVRV 93
K++G+G K+VR
Sbjct: 154 TSKWVGEGEKMVRA 167
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 55/80 (68%), Gaps = 3/80 (3%)
Query: 15 DVQIQEIKESVELPLTHPEYYEEMGIKPP-KGVILYGPPGTGKTLLAKAVANQTSATFLR 73
D+ Q ++E V LP PE + G++ P +G++L+GPPG GKT+LAKAVA +++ATF
Sbjct: 121 DLAKQALQEIVILPSLRPELF--TGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFN 178
Query: 74 VVGSELIQKYLGDGPKLVRV 93
+ + L KY+G+G KLVR
Sbjct: 179 ISAASLTSKYVGEGEKLVRA 198
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 55/81 (67%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G+L+ +E+ ++ P+ +P+ ++ +G+ P GV+L GPPG GKTLLAKAVAN++ F
Sbjct: 13 GALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNF 72
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+ V G EL+ Y+G+ + VR
Sbjct: 73 ISVKGPELLNMYVGESERAVR 93
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 8 LKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67
K G + I+E+KE VE L P + +G + PKG++L GPPGTGKTLLA+AVA +
Sbjct: 15 FKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73
Query: 68 SATFLRVVGSELIQKYLGDGPKLVR 92
+ F + GS+ ++ ++G G VR
Sbjct: 74 NVPFFHISGSDFVELFVGVGAARVR 98
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 19 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
+ +KE+V LP+ P ++ KP G++LYGPPGTGK+ LAKAVA + ++TF V S+
Sbjct: 61 EALKEAVILPVKFPHLFK-GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 119
Query: 79 LIQKYLGDGPKLVR 92
L+ K++G+ KLV+
Sbjct: 120 LVSKWMGESEKLVK 133
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 19 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
+ +KE+V LP+ P ++ KP G++LYGPPGTGK+ LAKAVA + ++TF V S+
Sbjct: 37 EALKEAVILPVKFPHLFK-GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 95
Query: 79 LIQKYLGDGPKLVR 92
L+ K++G+ KLV+
Sbjct: 96 LVSKWMGESEKLVK 109
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 72.0 bits (175), Expect = 7e-14, Method: Composition-based stats.
Identities = 34/74 (45%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 19 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
+ +KE+V LP+ P ++ KP G++LYGPPGTGK+ LAKAVA + ++TF V S+
Sbjct: 46 EALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 104
Query: 79 LIQKYLGDGPKLVR 92
L+ K++G+ KLV+
Sbjct: 105 LVSKWMGESEKLVK 118
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 72.0 bits (175), Expect = 7e-14, Method: Composition-based stats.
Identities = 34/74 (45%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 19 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
+ +KE+V LP+ P ++ KP G++LYGPPGTGK+ LAKAVA + ++TF V S+
Sbjct: 28 EALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86
Query: 79 LIQKYLGDGPKLVR 92
L+ K++G+ KLV+
Sbjct: 87 LVSKWMGESEKLVK 100
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 8 LKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67
K G + I+E+KE VE L P + +G + PKG++L GPPGTG TLLA+AVA +
Sbjct: 15 FKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEA 73
Query: 68 SATFLRVVGSELIQKYLGDGPKLVR 92
+ F + GS+ ++ ++G G VR
Sbjct: 74 NVPFFHISGSDFVELFVGVGAARVR 98
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 19 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
+E+ E V+ L +PE Y +G K PKGV+L GPPGTGKTLLAKAVA + F + GS
Sbjct: 21 EEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSS 79
Query: 79 LIQKYLGDGPKLVR 92
I+ ++G G VR
Sbjct: 80 FIEMFVGLGASRVR 93
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 19 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
+E+ E VE L P ++++G K PKGV++ GPPGTGKTLLAKA+A + F + GS+
Sbjct: 22 EEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD 80
Query: 79 LIQKYLGDGPKLVR 92
++ ++G G VR
Sbjct: 81 FVEMFVGVGASRVR 94
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 20 EIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 79
E++E V+ L PE + ++G K PKG +L GPPG GKTLLAKAVA + FL + G+E
Sbjct: 17 EVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEF 75
Query: 80 IQKYLGDGPKLVRVALVPEVR 100
++ G G VR +L E R
Sbjct: 76 VEVIGGLGAARVR-SLFKEAR 95
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 64.7 bits (156), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 19 QEIKESVELPLTHPEYYEEMGIKPP-KGVILYGPPGTGKTLLAKAVANQ-TSATFLRVVG 76
+ +KE+V LP+ P + G + P +G++L+GPPGTGK+ LAKAVA + ++TF +
Sbjct: 144 EALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 201
Query: 77 SELIQKYLGDGPKLVR 92
S+L+ K+LG+ KLV+
Sbjct: 202 SDLVSKWLGESEKLVK 217
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 64.7 bits (156), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 19 QEIKESVELPLTHPEYYEEMGIKPP-KGVILYGPPGTGKTLLAKAVANQ-TSATFLRVVG 76
+ +KE+V LP+ P + G + P +G++L+GPPGTGK+ LAKAVA + ++TF +
Sbjct: 22 EALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 79
Query: 77 SELIQKYLGDGPKLVR 92
S+L+ K+LG+ KLV+
Sbjct: 80 SDLVSKWLGESEKLVK 95
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 29 LTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP 88
L +P + EMG + PKGV+L GPPG GKT LA+AVA + F+ GS+ ++ ++G G
Sbjct: 59 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 118
Query: 89 KLVR 92
VR
Sbjct: 119 ARVR 122
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp
From Thermus Thermophilus
Length = 254
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 29 LTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP 88
L +P + EMG + PKGV+L GPPG GKT LA+AVA + F+ GS+ ++ ++G G
Sbjct: 35 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 94
Query: 89 KLVR 92
VR
Sbjct: 95 ARVR 98
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 62.8 bits (151), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 29 LTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP 88
L +P + EMG + PKGV+L GPPG GKT LA+AVA + F+ GS+ ++ ++G G
Sbjct: 50 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 109
Query: 89 KLVR 92
VR
Sbjct: 110 ARVR 113
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 62.8 bits (151), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 29 LTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP 88
L +P + EMG + PKGV+L GPPG GKT LA+AVA + F+ GS+ ++ ++G G
Sbjct: 59 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 118
Query: 89 KLVR 92
VR
Sbjct: 119 ARVR 122
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 44 KGVILYGPPGTGKTLLAKAVANQTSAT--FLRVVGSEL 79
+ V+L GPPGTGKT LA A+A + + F +VGSE+
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 44 KGVILYGPPGTGKTLLAKAVANQ--TSATFLRVVGSEL 79
+ V+L GPPGTGKT LA A+A + + F VGSE+
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEV 115
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRV 74
+IL+GPPGTGKT LA+ +A +A R+
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERI 81
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 39 GIKPPK----GVILYGPPGTGKTLLAKAVANQ---TSATFLRVVGSELIQKYLGDGPKLV 91
G+K PK I GP G GKT LA+A+A + +R+ SE ++K+ G +L
Sbjct: 513 GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLT 572
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 47 ILYGPPGTGKTLLAKAVANQ 66
+L G PG GKT +A+ +A Q
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQ 224
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
Length = 310
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ-KYLG 85
PK +++ GP G GKT +A+ +A +A F++V ++ + Y+G
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK 82
+P + ++L+GPPG GKT LA +A++ LRV I+K
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEK 76
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
Length = 444
Score = 33.9 bits (76), Expect = 0.025, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ-KYLG 85
PK +++ GP G GKT +A+ +A +A F++V ++ + Y+G
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK 82
+P + ++L+GPPG GKT LA +A++ LRV I+K
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEK 76
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK 82
+P + ++L+GPPG GKT LA +A++ LRV I+K
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEK 76
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ 81
PK +++ GP G GKT +A+ +A +A F++V ++ +
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 87
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ 81
PK +++ GP G GKT +A+ +A +A F++V ++ +
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 94
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ 81
PK +++ GP G GKT +A+ +A +A F++V ++ +
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 48 LYGPPGTGKTLLAKAVANQTSATFLRV 74
L GPPG GKT LAK++A F+R+
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRI 139
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 32.7 bits (73), Expect = 0.056, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 46 VILYGP-PGTGKTLLAKAVANQTSATFLRVVGSE 78
+IL+ P PGTGKT +AKA+ + +A + V GS+
Sbjct: 50 IILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 32.7 bits (73), Expect = 0.058, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ-KYLG 85
PK ++ GP G GKT +A+ +A +A F++V ++ + Y+G
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 32.3 bits (72), Expect = 0.073, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 44 KGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 84
+ +LYGPPG GKT A VA + L S++ K L
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTL 118
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 42 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
P V+L GPP +GKT LA +A +++ F+++ +
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD 98
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 42 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
P V+L GPP +GKT LA +A +++ F+++ +
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD 99
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 34 YYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68
+Y+ + K +G+IL GPPG+GKT++ +S
Sbjct: 1260 FYDLLNSK--RGIILCGPPGSGKTMIMNNALRNSS 1292
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 34 YYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68
+Y+ + K +G+IL GPPG+GKT++ +S
Sbjct: 1041 FYDLLNSK--RGIILCGPPGSGKTMIMNNALRNSS 1073
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1
INITIATORS Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 32 PEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFL 72
P Y EE P + +YG GTGKT + K V ++ FL
Sbjct: 38 PLYREE----KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFL 74
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 34 YYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ------TSATFLR 73
Y++ M K + VIL GPPG+GK + + +A +S FLR
Sbjct: 19 YFQSMASKLLRAVIL-GPPGSGKGTVCQRIAQNFGLQHLSSGHFLR 63
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFL 72
V + GP GTGK+ +AK +A Q A++L
Sbjct: 7 VAVDGPSGTGKSSVAKELARQLGASYL 33
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 39 GIKPPKGV--ILYGPPGTGKTLLAKAVA 64
++ PKG+ ++ G PGTGKT +A+ +A
Sbjct: 4 SMEQPKGINILITGTPGTGKTSMAEMIA 31
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 46 VILYGPPGTGKTLLAKAVANQ 66
V+L GPPG GKT LA +A++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE 74
>pdb|2W58|A Chain A, Crystal Structure Of The Dnai
pdb|2W58|B Chain B, Crystal Structure Of The Dnai
Length = 202
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 41 KPPKGVILYGPPGTGKTLLAKAVANQTS 68
K KG+ L+G G GKT L A+AN+ +
Sbjct: 52 KKMKGLYLHGSFGVGKTYLLAAIANELA 79
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 46 VILYGPPGTGKTLLAKAVANQ 66
V+L GPPG GKT LA +A++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE 74
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 46 VILYGPPGTGKTLLAKAVANQ 66
V+L GPPG GKT LA +A++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE 74
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 46 VILYGPPGTGKTLLAKAVANQ 66
V+L GPPG GKT LA +A++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE 74
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 46 VILYGPPGTGKTLLAKAVANQ 66
V+L GPPG GKT LA +A++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE 74
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 39 GIKPPK---GVILY-GPPGTGKTLLAKAVAN---QTSATFLRVVGSELIQKY 83
G+K P G L+ GP G GKT LAK +A T +R+ +E ++K+
Sbjct: 580 GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKH 631
>pdb|3A4L|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4L|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3AM1|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Anticodon-StemLOOP TRUNCATED TRNA(SEC)
Length = 260
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVV--GSELIQ 81
+IL G PG GK+ +K +A S + V+ GS+LI+
Sbjct: 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44
>pdb|3ADB|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 1)
pdb|3ADB|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 1)
pdb|3ADC|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 2)
pdb|3ADC|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 2)
pdb|3ADD|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 3)
pdb|3ADD|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 3)
Length = 259
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVV--GSELIQ 81
+IL G PG GK+ +K +A S + V+ GS+LI+
Sbjct: 14 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 51
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83
++ P +L G PG+GKT L A+ +T + + Q++
Sbjct: 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH 73
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 45 GVILYGPPGTGKTLLAKAVANQTSATFLRV 74
++L G PG GKT L K +A+++ ++ V
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|2RHM|A Chain A, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|B Chain B, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|C Chain C, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|D Chain D, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
Length = 193
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 39 GIKPPKGVILYGPPGTGKTLLAKAVAN 65
G + P +I+ G P TGKT L++A+A
Sbjct: 1 GXQTPALIIVTGHPATGKTTLSQALAT 27
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK-YLGD 86
++L GP G+GKTLLA+ +A F + L + Y+G+
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0
Angstroms Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 45 GVILYGPPGTGKTLLAKAVANQTSATFLRV 74
++L G PG GKT L K +A+++ ++ V
Sbjct: 13 NILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK-YLGD 86
++L GP G+GKTLLA+ +A F + L + Y+G+
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 41 KPPKGVILYGPPGTGKTLLAKAVAN---QTSATFLRVVGSELIQKY 83
+P + GP G GKT LAK +A T +R+ +E ++K+
Sbjct: 42 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKH 87
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 46 VILYGPPGTGKTLLAKAVANQ 66
++ YGPPGTGKT A+A +
Sbjct: 49 LLFYGPPGTGKTSTIVALARE 69
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 46 VILYGPPGTGKTLLAKAVANQ 66
V+L GPPG G+T LA +A++
Sbjct: 54 VLLAGPPGLGRTTLAHIIASE 74
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 43 PKGVILYGPPGTGKTLLAKAVANQTSATF 71
P+ V+L GP G GK+ L K + + S+ F
Sbjct: 4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIF 32
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 45 GVILYGPPGTGKTLLAKAVA 64
++L GP G+GKTL+A+ +A
Sbjct: 74 NILLIGPTGSGKTLMAQTLA 93
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77
+ +YG GTGKT L +A N+ RV+ S
Sbjct: 40 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS 71
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77
+ +YG GTGKT L +A N+ RV+ S
Sbjct: 39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS 70
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77
+ +YG GTGKT L +A N+ RV+ S
Sbjct: 40 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS 71
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 44 KGVILYGPPGTGKTLLAKAVANQ--TSATFLRVVGSEL 79
+ V++ G PGTGKT +A +A F + GSE+
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 44 KGVILYGPPGTGKTLLAKAVAN 65
+ V+L G PGTGK++L +A+A
Sbjct: 61 RHVLLIGEPGTGKSMLGQAMAE 82
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 21/86 (24%)
Query: 27 LPLTHPEYYEEMGIKPPKGV--ILYGPPGTGKTLLAKAVANQ------TSATFLRVV--- 75
+P PEY PKG+ +L GPPG GK A +A + LR +
Sbjct: 6 VPAAEPEY--------PKGIRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVAS 57
Query: 76 GSELIQKYLG--DGPKLVRVALVPEV 99
GSEL +K D KLV +V E+
Sbjct: 58 GSELGKKLKATMDAGKLVSDEMVVEL 83
>pdb|3OP6|A Chain A, Crystal Structure Of An Oligo-Nucleotide Binding Protein
(Lpg1207) From Legionella Pneumophila Subsp. Pneumophila
Str. Philadelphia 1 At 2.00 A Resolution
pdb|3OP6|B Chain B, Crystal Structure Of An Oligo-Nucleotide Binding Protein
(Lpg1207) From Legionella Pneumophila Subsp. Pneumophila
Str. Philadelphia 1 At 2.00 A Resolution
Length = 152
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALV 96
++G PP G LYG P L++ ++ Q + F SEL Q GD KLV+ LV
Sbjct: 96 DVGAXPPFGN-LYGLP----VLVSTKLSAQDNILFNAGSHSELXQLSFGDFEKLVKPTLV 150
>pdb|3E1S|A Chain A, Structure Of An N-Terminal Truncation Of Deinococcus
Radiodurans Recd2
pdb|3GP8|A Chain A, Crystal Structure Of The Binary Complex Of Recd2 With Dna
pdb|3GPL|A Chain A, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
pdb|3GPL|B Chain B, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
Length = 574
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRV 74
V+L G PGTGK+ KAVA+ + L V
Sbjct: 207 VVLTGGPGTGKSTTTKAVADLAESLGLEV 235
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 44 KGVILYGPPGTGKTLLAKAVANQ--TSATFLRVVGSEL 79
+ V++ G PGTGKT +A A F + GSE+
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEI 123
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 46 VILYGPPGTGKT 57
++ YGPPGTGKT
Sbjct: 61 MLFYGPPGTGKT 72
>pdb|1U0J|A Chain A, Crystal Structure Of Aav2 Rep40-adp Complex
Length = 267
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 46 VILYGPPGTGKTLLAKAVAN 65
+ L+GP TGKT +A+A+A+
Sbjct: 107 IWLFGPATTGKTNIAEAIAH 126
>pdb|1S9H|A Chain A, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|B Chain B, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|C Chain C, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
Length = 268
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 46 VILYGPPGTGKTLLAKAVAN 65
+ L+GP TGKT +A+A+A+
Sbjct: 108 IWLFGPATTGKTNIAEAIAH 127
>pdb|3NGM|A Chain A, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|B Chain B, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|C Chain C, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|D Chain D, Crystal Structure Of Lipase From Gibberella Zeae
Length = 319
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 43 PKGVILYGPPGTGKTLLAKAVANQTSATF 71
P + YG P G T LA V+NQ F
Sbjct: 163 PLDIYTYGSPRVGNTQLAAFVSNQAGGEF 191
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In
Complex With Dna
Length = 387
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 43 PKGVILYGPPGTGKTLLAKAVANQTSA 69
P +LYG GTGKT +A+ V + A
Sbjct: 44 PSNALLYGLTGTGKTAVARLVLRRLEA 70
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL---GDGPKLVRV 93
V+L G PG GKT LA A + +G ++ ++ L G+ LV V
Sbjct: 7 VVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVV 57
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 14/63 (22%)
Query: 29 LTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP 88
L H + Y + ++ GPPGTGKT+ TSAT + + + G+GP
Sbjct: 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTV--------TSATIVYHLARQ------GNGP 402
Query: 89 KLV 91
LV
Sbjct: 403 VLV 405
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 47 ILYGPPGTGKTLLAKAVANQTSATFLRVV 75
I++GPPGTGKT + Q L+V+
Sbjct: 209 IIHGPPGTGKTTTVVEIILQAVKQGLKVL 237
>pdb|1YP1|A Chain A, Crystal Structure Of A Non-hemorrhagic
Fibrin(ogen)olytic Metalloproteinase From Venom Of
Agkistrodon Acutus
Length = 202
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 66 QTSATFLRVVGSELIQKYLGDGPKLVRV 93
Q S T VV S + KY GD K+V V
Sbjct: 4 QVSVTLQLVVDSSMFAKYNGDAKKIVTV 31
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 47 ILYGPPGTGKTLLAKAVANQTSATFLRVV 75
I++GPPGTGKT + Q L+V+
Sbjct: 209 IIHGPPGTGKTTTVVEIILQAVKQGLKVL 237
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 7 ALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKP-----PKGVILYGPPGTGK 56
+LK+ G VQ+Q ++E + T P+ Y G P P+G P GT +
Sbjct: 477 SLKELGITTVQLQPVEEFNSIDETQPDTY-NWGYDPRNYNVPEGAYATTPEGTAR 530
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 33 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68
++ E+ KG+ LYG G GK+ L A+A++ S
Sbjct: 142 DFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177
>pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex
pdb|2XZP|A Chain A, Upf1 Helicase
Length = 623
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 14/63 (22%)
Query: 29 LTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP 88
L H + Y + ++ GPPGTGKT+ TSAT + + + G+GP
Sbjct: 180 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTV--------TSATIVYHLARQ------GNGP 225
Query: 89 KLV 91
LV
Sbjct: 226 VLV 228
>pdb|2GJK|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|B Chain B, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK7|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
Length = 624
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 14/63 (22%)
Query: 29 LTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP 88
L H + Y + ++ GPPGTGKT+ TSAT + + + G+GP
Sbjct: 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTV--------TSATIVYHLARQ------GNGP 226
Query: 89 KLV 91
LV
Sbjct: 227 VLV 229
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate
Kinase From Agrobacterium Tumefaciens, Northeast
Structural Genomics Target Atr62
Length = 191
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 46 VILYGPPGTGKTLLAKAVAN 65
++L G PG+GK+ +A+A+AN
Sbjct: 12 LLLSGHPGSGKSTIAEALAN 31
>pdb|2W20|A Chain A, Structure Of The Catalytic Domain Of The Native Nana
Sialidase From Streptococcus Pneumoniae
pdb|2W20|B Chain B, Structure Of The Catalytic Domain Of The Native Nana
Sialidase From Streptococcus Pneumoniae
Length = 471
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 28 PLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68
P+ ++ + +G+ P G++L P G+ L+ N S
Sbjct: 236 PMVKADWMKFLGVGPGTGIVLRNGPHKGRILIPVYTTNNVS 276
>pdb|3H72|A Chain A, Crystal Structure Of Streptococcus Pneumoniae D39
Neuraminidase A Precursor (Nana) In Complex With Nana
pdb|3H72|B Chain B, Crystal Structure Of Streptococcus Pneumoniae D39
Neuraminidase A Precursor (Nana) In Complex With Nana
pdb|3H73|A Chain A, Crystal Structure Of Streptococcus Pneumoniae D39
Neuraminidase A Precursor (Nana) In Complex With Dana
pdb|3H73|B Chain B, Crystal Structure Of Streptococcus Pneumoniae D39
Neuraminidase A Precursor (Nana) In Complex With Dana
Length = 477
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 28 PLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68
P+ ++ + +G+ P G++L P G+ L+ N S
Sbjct: 240 PMVKADWMKFLGVGPGTGIVLRNGPHKGRILIPVYTTNNVS 280
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 46 VILYGPPGTGKTLLAKAVA 64
++ GPPGTGKT A A+A
Sbjct: 41 LLFSGPPGTGKTATAIALA 59
>pdb|2YA4|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
pdb|2YA4|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
pdb|2YA5|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Sialic Acid
pdb|2YA5|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Sialic Acid
pdb|2YA6|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Dana
pdb|2YA6|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Dana
pdb|2YA7|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Zanamivir
pdb|2YA7|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Zanamivir
pdb|2YA7|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Zanamivir
pdb|2YA7|D Chain D, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Zanamivir
pdb|2YA8|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Oseltamivir Carboxylate
pdb|2YA8|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Oseltamivir Carboxylate
Length = 493
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 28 PLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68
P+ ++ + +G+ P G++L P G+ L+ N S
Sbjct: 257 PMVKADWMKFLGVGPGTGIVLRNGPHKGRILIPVYTTNNVS 297
>pdb|2VVZ|A Chain A, Structure Of The Catalytic Domain Of Streptococcus
Pneumoniae Sialidase Nana
pdb|2VVZ|B Chain B, Structure Of The Catalytic Domain Of Streptococcus
Pneumoniae Sialidase Nana
Length = 504
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 28 PLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68
P+ ++ + +G+ P G++L P G+ L+ N S
Sbjct: 238 PMVKADWMKFLGVGPGTGIVLRNGPHKGRILIPVYTTNNVS 278
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 46 VILYGPPGTGKTLLAKAVANQ 66
++ GPPGTGKT A A+A
Sbjct: 41 LLFSGPPGTGKTATAIALARD 61
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 13/49 (26%)
Query: 25 VELPLTHPEYY-------EEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 66
V+ PLT Y MG P +GP GTGKT KA+ +Q
Sbjct: 585 VQTPLTDRCYLTLTQALESRMGGNP------FGPAGTGKTETVKALGSQ 627
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 41 KPPKGVILYGPPGTGKTLLAKAVAN---QTSATFLRVVGSELIQKY 83
+P + GP G GKT LAK +A T +R+ +E +K+
Sbjct: 45 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAXIRIDXTEYXEKH 90
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 13/49 (26%)
Query: 25 VELPLTHPEYY-------EEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 66
V+ PLT Y MG P +GP GTGKT KA+ +Q
Sbjct: 585 VQTPLTDRCYLTLTQALESRMGGNP------FGPAGTGKTETVKALGSQ 627
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 40 IKPPKGVILYGPPGTGKTLL 59
IKP + V L GP G+GKT +
Sbjct: 378 IKPGQKVALVGPTGSGKTTI 397
>pdb|2JPB|A Chain A, Solution Structure Of Ompr-C Dna Binding Protein
Length = 104
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 5 YKALKKRGSLDVQIQEIKESVELPLTHPEY 34
Y A+++ S+DVQI ++ VE HP Y
Sbjct: 59 YSAMER--SIDVQISRLRRMVEEDPAHPRY 86
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 46 VILYGPPGTGKTLLAKAVA 64
VI+ GP G+GKT L +A++
Sbjct: 33 VIILGPNGSGKTTLLRAIS 51
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 13/70 (18%)
Query: 43 PKGV--ILYGPPGTGKTL----LAK--AVANQTSATFLRVV---GSELIQKYLG--DGPK 89
PKGV +L GPPG GK LAK V + + LR + GSEL +K D K
Sbjct: 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGK 73
Query: 90 LVRVALVPEV 99
LV +V E+
Sbjct: 74 LVSDEMVLEL 83
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 47 ILYGPPGTGKTLLAKAVANQ 66
+L G PG GKT +A+ +A Q
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQ 224
>pdb|1ODD|A Chain A, Ompr C-terminal Domain (ompr-c) From Escherichia Coli
Length = 118
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 5 YKALKKRGSLDVQIQEIKESVELPLTHPEY 34
Y A+++ S+DVQI ++ VE HP Y
Sbjct: 73 YSAMER--SIDVQISRLRRMVEEDPAHPRY 100
>pdb|1OPC|A Chain A, Ompr Dna-Binding Domain, Escherichia Coli
Length = 110
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 5 YKALKKRGSLDVQIQEIKESVELPLTHPEY 34
Y A+++ S+DVQI ++ VE HP Y
Sbjct: 65 YSAMER--SIDVQISRLRRMVEEDPAHPRY 92
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 31 HPEYYEEMGIKPPKGVILYGPPGTGKTLLAK-AVANQTSATF 71
H E +M + P +L G G+GKT++A+ A+ + A F
Sbjct: 377 HQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGF 418
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 26 ELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
++P T Y++ +P +++ GP GTGK+ L K + + +F
Sbjct: 3 DIPTTENLYFQGSMSRP---IVISGPSGTGKSTLLKKLFAEYPDSF 45
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168 In
Complex With Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168 In
Complex With Adenosine-5'-Diphosphate
Length = 338
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK 82
++ GP G GKT LA ++ + SA ++ + I+K
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSAN-IKTTAAPXIEK 93
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRQ|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRR|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
Length = 323
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRV 74
P + L GP GKT LA A+A+ + V
Sbjct: 5 PPAIFLMGPTAAGKTDLAMALADALPCELISV 36
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 33 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 66
++Y + G P ++ GPPG GKT A A+A +
Sbjct: 38 KHYVKTGSMP--HLLFAGPPGVGKTTAALALARE 69
>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|3FOZ|B Chain B, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|2ZXU|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In
The Complex With Trna(Phe) And Dmaspp
pdb|2ZXU|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In
The Complex With Trna(Phe) And Dmaspp
Length = 316
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 43 PKGVILYGPPGTGKTLLA 60
PK + L GP +GKT LA
Sbjct: 10 PKAIFLMGPTASGKTALA 27
>pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In
The Complex With Trna(Phe)
pdb|2ZM5|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In
The Complex With Trna(Phe)
Length = 316
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 43 PKGVILYGPPGTGKTLLA 60
PK + L GP +GKT LA
Sbjct: 10 PKAIFLXGPTASGKTALA 27
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 25.4 bits (54), Expect = 9.5, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 47 ILYGPPGTGKTLLAKAVANQTS 68
++ GPPGTGKT+ + + S
Sbjct: 379 LIQGPPGTGKTVTSATIVYHLS 400
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,211,304
Number of Sequences: 62578
Number of extensions: 122787
Number of successful extensions: 644
Number of sequences better than 100.0: 135
Number of HSP's better than 100.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 148
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)