BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16321
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48601|PRS4_DROME 26S protease regulatory subunit 4 OS=Drosophila melanogaster
GN=Pros26.4 PE=2 SV=2
Length = 439
Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/81 (97%), Positives = 79/81 (97%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct: 187 GGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 246
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
LRVVGSELIQKYLGDGPKLVR
Sbjct: 247 LRVVGSELIQKYLGDGPKLVR 267
>sp|P62193|PRS4_RAT 26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1
PE=2 SV=1
Length = 440
Score = 161 bits (408), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 79/81 (97%), Positives = 79/81 (97%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct: 188 GGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 247
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
LRVVGSELIQKYLGDGPKLVR
Sbjct: 248 LRVVGSELIQKYLGDGPKLVR 268
>sp|P62192|PRS4_MOUSE 26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1
SV=1
Length = 440
Score = 161 bits (408), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 79/81 (97%), Positives = 79/81 (97%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct: 188 GGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 247
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
LRVVGSELIQKYLGDGPKLVR
Sbjct: 248 LRVVGSELIQKYLGDGPKLVR 268
>sp|P62191|PRS4_HUMAN 26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1
SV=1
Length = 440
Score = 161 bits (408), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 79/81 (97%), Positives = 79/81 (97%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct: 188 GGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 247
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
LRVVGSELIQKYLGDGPKLVR
Sbjct: 248 LRVVGSELIQKYLGDGPKLVR 268
>sp|Q90732|PRS4_CHICK 26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2
SV=1
Length = 440
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/81 (97%), Positives = 79/81 (97%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct: 188 GGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 247
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
LRVVGSELIQKYLGDGPKLVR
Sbjct: 248 LRVVGSELIQKYLGDGPKLVR 268
>sp|O16368|PRS4_CAEEL Probable 26S protease regulatory subunit 4 OS=Caenorhabditis
elegans GN=rpt-2 PE=3 SV=1
Length = 443
Score = 155 bits (391), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 74/81 (91%), Positives = 78/81 (96%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LD QIQEIKE+VELPLTHPEYYEEMGI+PPKGVILYG PGTGKTLLAKAVANQTSATF
Sbjct: 191 GGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKTLLAKAVANQTSATF 250
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
LR+VGSELIQKYLGDGPK+VR
Sbjct: 251 LRIVGSELIQKYLGDGPKMVR 271
>sp|P36612|PRS4_SCHPO 26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mts2 PE=2 SV=1
Length = 448
Score = 152 bits (384), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/81 (91%), Positives = 77/81 (95%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ QIQEIKE+VELPLTHPE YEEMGIKPPKGVILYG PGTGKTLLAKAVANQTSATF
Sbjct: 194 GGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF 253
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
LRVVGSELIQKYLGDGP+LVR
Sbjct: 254 LRVVGSELIQKYLGDGPRLVR 274
>sp|P40327|PRS4_YEAST 26S protease regulatory subunit 4 homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT2 PE=1
SV=3
Length = 437
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/81 (90%), Positives = 76/81 (93%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ QIQEIKESVELPLTHPE YEEMGIKPPKGVILYG PGTGKTLLAKAVANQTSATF
Sbjct: 185 GGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF 244
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
LR+VGSELIQKYLGDGP+L R
Sbjct: 245 LRIVGSELIQKYLGDGPRLCR 265
>sp|Q55BV5|PRS4_DICDI 26S protease regulatory subunit 4 homolog OS=Dictyostelium
discoideum GN=psmC1 PE=1 SV=1
Length = 439
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/81 (87%), Positives = 77/81 (95%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ Q+QE+KE++ELPLTHPE YEE+GIKPPKGVILYG PGTGKTLLAKAVANQTSATF
Sbjct: 187 GGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 246
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
LRVVGSELIQKYLGDGPKLVR
Sbjct: 247 LRVVGSELIQKYLGDGPKLVR 267
>sp|P46466|PRS4_ORYSJ 26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp.
japonica GN=TBP2 PE=2 SV=2
Length = 448
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 72/81 (88%), Positives = 76/81 (93%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LD QIQEIKE+VELPLTHPE YE++GI+PPKGVILYG PGTGKTLLAKAVAN TSATF
Sbjct: 196 GGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANSTSATF 255
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
LRVVGSELIQKYLGDGPKLVR
Sbjct: 256 LRVVGSELIQKYLGDGPKLVR 276
>sp|Q9SL67|PRS4B_ARATH 26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis
thaliana GN=RPT2B PE=2 SV=1
Length = 443
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/81 (88%), Positives = 76/81 (93%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ QIQEIKE+VELPLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATF
Sbjct: 191 GGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF 250
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
LRVVGSELIQKYLGDGPKLVR
Sbjct: 251 LRVVGSELIQKYLGDGPKLVR 271
>sp|Q9SZD4|PRS4A_ARATH 26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis
thaliana GN=RPT2A PE=2 SV=1
Length = 443
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/81 (88%), Positives = 76/81 (93%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ QIQEIKE+VELPLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATF
Sbjct: 191 GGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF 250
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
LRVVGSELIQKYLGDGPKLVR
Sbjct: 251 LRVVGSELIQKYLGDGPKLVR 271
>sp|Q8SRH0|PRS4_ENCCU 26S protease regulatory subunit 4 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPT2 PE=1 SV=1
Length = 424
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/81 (87%), Positives = 77/81 (95%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ QIQEIKESVELPLT+PE Y+EMGIKPPKGVILYG PGTGKTLLAKAVANQTSATF
Sbjct: 172 GGLEEQIQEIKESVELPLTNPELYQEMGIKPPKGVILYGLPGTGKTLLAKAVANQTSATF 231
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
LRVVG+ELIQ+YLG+GPKLVR
Sbjct: 232 LRVVGTELIQEYLGEGPKLVR 252
>sp|O28303|PAN_ARCFU Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=pan PE=1 SV=1
Length = 398
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 73/81 (90%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LDVQI+EI+E+VELPL PE + E+GI+PPKGV+LYGPPGTGKTLLAKAVANQT ATF
Sbjct: 144 GGLDVQIEEIREAVELPLLKPELFAEVGIEPPKGVLLYGPPGTGKTLLAKAVANQTRATF 203
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSE +QKY+G+G +LVR
Sbjct: 204 IRVVGSEFVQKYIGEGARLVR 224
>sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana
GN=RPT3 PE=1 SV=1
Length = 408
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 72/81 (88%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G D+Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAVAN T+A F
Sbjct: 158 GGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSE +QKYLG+GP++VR
Sbjct: 218 IRVVGSEFVQKYLGEGPRMVR 238
>sp|P85200|PRS6B_HELAN 26S protease regulatory subunit 6B homolog OS=Helianthus annuus
PE=1 SV=1
Length = 414
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 72/81 (88%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G D+Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAVAN T+A F
Sbjct: 164 GGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 223
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSE +QKYLG+GP++VR
Sbjct: 224 IRVVGSEFVQKYLGEGPRMVR 244
>sp|P54778|PRS6B_SOLTU 26S protease regulatory subunit 6B homolog OS=Solanum tuberosum
PE=2 SV=1
Length = 413
Score = 128 bits (322), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 56/81 (69%), Positives = 72/81 (88%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G D+Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAVA+ T+A F
Sbjct: 163 GGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAF 222
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSE +QKYLG+GP++VR
Sbjct: 223 IRVVGSEFVQKYLGEGPRMVR 243
>sp|Q8PY58|PAN_METMA Proteasome-activating nucleotidase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=pan PE=3 SV=1
Length = 420
Score = 128 bits (322), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 60/81 (74%), Positives = 73/81 (90%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LD QIQE++E+VELPLT PE + +GI+PPKGV+LYG PGTGKTLLAKAVA++T+ATF
Sbjct: 162 GGLDEQIQELQEAVELPLTSPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAHRTNATF 221
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSEL+QKY+GDG KLVR
Sbjct: 222 IRVVGSELVQKYIGDGSKLVR 242
>sp|A3CV35|PAN_METMJ Proteasome-activating nucleotidase OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1
Length = 412
Score = 127 bits (318), Expect = 3e-29, Method: Composition-based stats.
Identities = 58/81 (71%), Positives = 74/81 (91%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ QI+EI+E+VELPLT P+ +E++GI PPKGV+LYGPPGTGKTLLA+AVA+QT+A F
Sbjct: 156 GGLEPQIEEIREAVELPLTKPQLFEKVGISPPKGVLLYGPPGTGKTLLARAVAHQTNAHF 215
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
LRVVGSEL+QKY+G+G +LVR
Sbjct: 216 LRVVGSELVQKYIGEGARLVR 236
>sp|P34123|PRS6B_DICDI 26S protease regulatory subunit 6B homolog OS=Dictyostelium
discoideum GN=psmC4 PE=1 SV=1
Length = 403
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 56/81 (69%), Positives = 71/81 (87%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G D+Q QE++E+VELPLTH Y+++GI PP+GV+LYGPPGTGKT+LAKAVA+ TSA F
Sbjct: 153 GGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTSAAF 212
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSE +QKYLG+GP+LVR
Sbjct: 213 IRVVGSEFVQKYLGEGPRLVR 233
>sp|Q0W257|PAN_UNCMA Proteasome-activating nucleotidase OS=Uncultured methanogenic
archaeon RC-I GN=pan PE=3 SV=1
Length = 417
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 73/81 (90%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ QI E+KE+VELPL PE ++++GI+PPKGV+LYGPPGTGKTLLAKAVAN+T ATF
Sbjct: 162 GGLEAQINELKETVELPLLKPELFQKVGIEPPKGVLLYGPPGTGKTLLAKAVANRTKATF 221
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+R++GSEL+QKY+G+G ++VR
Sbjct: 222 IRIIGSELVQKYIGEGARMVR 242
>sp|Q8TI88|PAN_METAC Proteasome-activating nucleotidase OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=pan
PE=3 SV=2
Length = 421
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 59/81 (72%), Positives = 72/81 (88%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LD QIQE++E+VELPL PE + +GI+PPKGV+LYG PGTGKTLLAKAVA++T+ATF
Sbjct: 162 GGLDEQIQELQEAVELPLIEPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAHRTNATF 221
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSEL+QKY+GDG KLVR
Sbjct: 222 IRVVGSELVQKYIGDGSKLVR 242
>sp|Q63570|PRS6B_RAT 26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4
PE=1 SV=1
Length = 418
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 72/81 (88%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G +D+Q QE++E+VELPLTH E Y+++GI PP+GV++YGPPG GKT+LAKAVA+ T+A F
Sbjct: 168 GGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAF 227
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSE +QKYLG+GP++VR
Sbjct: 228 IRVVGSEFVQKYLGEGPRMVR 248
>sp|P54775|PRS6B_MOUSE 26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1
SV=2
Length = 418
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 72/81 (88%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G +D+Q QE++E+VELPLTH E Y+++GI PP+GV++YGPPG GKT+LAKAVA+ T+A F
Sbjct: 168 GGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAF 227
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSE +QKYLG+GP++VR
Sbjct: 228 IRVVGSEFVQKYLGEGPRMVR 248
>sp|Q4R7L3|PRS6B_MACFA 26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4
PE=2 SV=1
Length = 418
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 72/81 (88%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G +D+Q QE++E+VELPLTH E Y+++GI PP+GV++YGPPG GKT+LAKAVA+ T+A F
Sbjct: 168 GGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAF 227
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSE +QKYLG+GP++VR
Sbjct: 228 IRVVGSEFVQKYLGEGPRMVR 248
>sp|P43686|PRS6B_HUMAN 26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1
SV=2
Length = 418
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 72/81 (88%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G +D+Q QE++E+VELPLTH E Y+++GI PP+GV++YGPPG GKT+LAKAVA+ T+A F
Sbjct: 168 GGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAF 227
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSE +QKYLG+GP++VR
Sbjct: 228 IRVVGSEFVQKYLGEGPRMVR 248
>sp|Q3T030|PRS6B_BOVIN 26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1
Length = 418
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 72/81 (88%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G +D+Q QE++E+VELPLTH E Y+++GI PP+GV++YGPPG GKT+LAKAVA+ T+A F
Sbjct: 168 GGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAF 227
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSE +QKYLG+GP++VR
Sbjct: 228 IRVVGSEFVQKYLGEGPRMVR 248
>sp|O74894|PRS6B_SCHPO 26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpt3 PE=3 SV=1
Length = 389
Score = 124 bits (311), Expect = 2e-28, Method: Composition-based stats.
Identities = 55/81 (67%), Positives = 70/81 (86%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LDVQ QE++E+VELPLT + Y ++GI PP+GV+LYGPPGTGKT+L KAVAN T+A F
Sbjct: 137 GGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANF 196
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSE +QKYLG+GP++VR
Sbjct: 197 IRVVGSEFVQKYLGEGPRMVR 217
>sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU08_1970 PE=1 SV=1
Length = 387
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/81 (69%), Positives = 68/81 (83%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LDVQ QEIKE+VELPL + Y ++GI PP+GV+LYGPPGTGKT+L KAVAN T ATF
Sbjct: 137 GGLDVQKQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTKATF 196
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RV GSE +QKYLG+GP++VR
Sbjct: 197 IRVNGSEFVQKYLGEGPRMVR 217
>sp|Q58576|PAN_METJA Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=pan PE=1 SV=1
Length = 430
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 73/81 (90%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ Q+QEI+E VELPL HPE +E++GI+PPKG++LYGPPGTGKTLLAKAVA +T+ATF
Sbjct: 173 GGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF 232
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSEL++K++G+G LV+
Sbjct: 233 IRVVGSELVKKFIGEGASLVK 253
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 71/81 (87%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LD+Q QEI+E+VELPLT + Y+++GI PP+GV+LYGPPGTGKT+L KAVAN T+A+F
Sbjct: 169 GGLDMQKQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASF 228
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RV GSE +QKYLG+GP++VR
Sbjct: 229 IRVNGSEFVQKYLGEGPRMVR 249
>sp|P46507|PRS6B_MANSE 26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1
Length = 415
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 70/81 (86%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G +D Q QEI+E+VELPLTH E Y ++GI+PP+GV++YGPPG GKT+LA AVA+ T+A F
Sbjct: 165 GGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLANAVAHHTTAAF 224
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSE +QKYLG+GP++VR
Sbjct: 225 IRVVGSEFVQKYLGEGPRMVR 245
>sp|B8GGN4|PAN_METPE Proteasome-activating nucleotidase OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3
SV=1
Length = 412
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 71/81 (87%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ QI EI+E+VELPL PE + +MGI+PPKGV+L+GPPGTGKTLLA+AVA+QT A F
Sbjct: 156 GGLEKQINEIREAVELPLKKPEVFRKMGIEPPKGVLLHGPPGTGKTLLARAVAHQTEAHF 215
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
LRVVGSEL+QKY+G+G +LVR
Sbjct: 216 LRVVGSELVQKYIGEGARLVR 236
>sp|Q25544|PRS8_NAEFO 26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2
SV=1
Length = 414
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 69/85 (81%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LD QI+EIKE +ELP+ HPE +E +GI PKGVI+YGPPGTGKTLLA+AVA+ T TF
Sbjct: 159 GGLDEQIKEIKEVIELPIKHPELFESLGIAQPKGVIMYGPPGTGKTLLARAVAHHTDCTF 218
Query: 72 LRVVGSELIQKYLGDGPKLVRVALV 96
+RV GSEL+QKY+G+G K+VR V
Sbjct: 219 IRVSGSELVQKYIGEGSKMVRELFV 243
>sp|Q9C5U3|PRS8A_ARATH 26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana
GN=RPT6A PE=2 SV=1
Length = 419
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 69/85 (81%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LD QI+EIKE +ELP+ HPE +E +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF
Sbjct: 164 GGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTF 223
Query: 72 LRVVGSELIQKYLGDGPKLVRVALV 96
+RV GSEL+QKY+G+G ++VR V
Sbjct: 224 IRVSGSELVQKYIGEGSRMVRELFV 248
>sp|Q94BQ2|PRS8B_ARATH 26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana
GN=RPT6B PE=2 SV=1
Length = 419
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 69/85 (81%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LD QI+EIKE +ELP+ HPE +E +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF
Sbjct: 164 GGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTF 223
Query: 72 LRVVGSELIQKYLGDGPKLVRVALV 96
+RV GSEL+QKY+G+G ++VR V
Sbjct: 224 IRVSGSELVQKYIGEGSRMVRELFV 248
>sp|P34124|PRS8_DICDI 26S protease regulatory subunit 8 OS=Dictyostelium discoideum
GN=psmC5 PE=1 SV=2
Length = 403
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 68/81 (83%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LD QI+EIKE +ELP+ HPE +E +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF
Sbjct: 148 GGLDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTF 207
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RV GSEL+QKY+G+G ++VR
Sbjct: 208 IRVSGSELVQKYIGEGSRMVR 228
>sp|Q5JHS5|PAN_PYRKO Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=pan PE=3
SV=1
Length = 397
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 72/80 (90%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ Q+QE++E++ELPL HPE +E++GI+PPKGV+LYGPPG GKTL+AKAVAN +ATF
Sbjct: 141 GGLEKQLQELREAIELPLKHPELFEQVGIEPPKGVLLYGPPGCGKTLMAKAVANHVNATF 200
Query: 72 LRVVGSELIQKYLGDGPKLV 91
+RVVGSEL++K++G+G +LV
Sbjct: 201 IRVVGSELVRKFIGEGARLV 220
>sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT3 PE=1
SV=2
Length = 428
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 67/81 (82%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LD+Q QEI+E+VELPL + YE++GI PP+GV+LYGPPGTGKT+L KAVAN T A F
Sbjct: 175 GGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RV GSE + KYLG+GP++VR
Sbjct: 235 IRVNGSEFVHKYLGEGPRMVR 255
>sp|P46470|PRS8_XENLA 26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2
SV=2
Length = 461
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 70/85 (82%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LD QI+EIKE +ELP+ HPE++E +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF
Sbjct: 147 GGLDKQIKEIKEVIELPVKHPEHFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTF 206
Query: 72 LRVVGSELIQKYLGDGPKLVRVALV 96
+RV GSEL+QK++G+G ++VR V
Sbjct: 207 IRVSGSELVQKFIGEGARMVRELFV 231
>sp|A7I8B8|PAN_METB6 Proteasome-activating nucleotidase OS=Methanoregula boonei (strain
6A8) GN=pan PE=3 SV=1
Length = 436
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 71/81 (87%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L QI E++E+VELPL PE + ++GI+PPKGV+LYGPPGTGKTLLAKAVA++T+A F
Sbjct: 181 GGLKEQINEVREAVELPLKRPELFTQIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAHF 240
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSEL+QKY+G+G +LVR
Sbjct: 241 MRVVGSELVQKYIGEGARLVR 261
>sp|A6UQT3|PAN_METVS Proteasome-activating nucleotidase OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1
Length = 407
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/81 (69%), Positives = 73/81 (90%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ QI++IKE VELPL +PE +E++GI PPKGV+LYGPPGTGKTLLAKAVA +T+A+F
Sbjct: 151 GGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVARETNASF 210
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSEL++K++G+G KLVR
Sbjct: 211 VRVVGSELVKKFIGEGAKLVR 231
>sp|Q2FQ56|PAN_METHJ Proteasome-activating nucleotidase OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=pan PE=3 SV=1
Length = 412
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 70/81 (86%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ QI EI+E+VELP+T P+ +E++GI PPKGV+LYGPPGTGKTLLAKAVA++T A F
Sbjct: 156 GGLEKQIMEIREAVELPMTRPDLFEKIGINPPKGVLLYGPPGTGKTLLAKAVAHETHAIF 215
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
L VGSEL+QKY+G+G +LVR
Sbjct: 216 LHTVGSELVQKYIGEGARLVR 236
>sp|Q8U4H3|PAN_PYRFU Proteasome-activating nucleotidase OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pan PE=3 SV=1
Length = 396
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 71/80 (88%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L Q+QE++E++ELPL HPE +EE+GI PPKGV+LYGPPG GKTL+AKA+A++ +ATF
Sbjct: 140 GGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKAIAHEVNATF 199
Query: 72 LRVVGSELIQKYLGDGPKLV 91
+RVVGSEL++KY+G+G +LV
Sbjct: 200 IRVVGSELVRKYIGEGARLV 219
>sp|O26824|PAN_METTH Proteasome-activating nucleotidase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=pan PE=3 SV=1
Length = 410
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 77/90 (85%), Gaps = 3/90 (3%)
Query: 3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKA 62
SY+ + G L+ Q++E+KE+VELPL PE +E++GI+PPKGV+LYGPPGTGKTLLAKA
Sbjct: 148 VSYEQI---GGLEEQVREVKETVELPLKKPELFEKIGIEPPKGVLLYGPPGTGKTLLAKA 204
Query: 63 VANQTSATFLRVVGSELIQKYLGDGPKLVR 92
VA++T+ATF+++V SE ++KY+G+G +LVR
Sbjct: 205 VAHETNATFIKIVASEFVRKYIGEGARLVR 234
>sp|B6YXR2|PAN_THEON Proteasome-activating nucleotidase OS=Thermococcus onnurineus
(strain NA1) GN=pan PE=3 SV=1
Length = 398
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 51/80 (63%), Positives = 73/80 (91%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G LD Q+QE++E++ELPL HPE +E++GI+PPKGV+LYGPPG GKTL+AKA+A++ +ATF
Sbjct: 142 GGLDKQLQELREAIELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAKALAHEVNATF 201
Query: 72 LRVVGSELIQKYLGDGPKLV 91
+RVVGSEL++K++G+G +LV
Sbjct: 202 IRVVGSELVRKFIGEGARLV 221
>sp|A6VHR1|PAN_METM7 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1
Length = 407
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/81 (69%), Positives = 73/81 (90%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ QI++IKE VELPL +PE +E++GI PPKGV+LYGPPGTGKTLLAKAVA +T+A+F
Sbjct: 151 GGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASF 210
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSEL++K++G+G KLVR
Sbjct: 211 VRVVGSELVKKFIGEGAKLVR 231
>sp|A9A916|PAN_METM6 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1
Length = 407
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/81 (69%), Positives = 73/81 (90%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ QI++IKE VELPL +PE +E++GI PPKGV+LYGPPGTGKTLLAKAVA +T+A+F
Sbjct: 151 GGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASF 210
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSEL++K++G+G KLVR
Sbjct: 211 VRVVGSELVKKFIGEGAKLVR 231
>sp|A4G0S4|PAN_METM5 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1
Length = 407
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/81 (69%), Positives = 73/81 (90%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ QI++IKE VELPL +PE +E++GI PPKGV+LYGPPGTGKTLLAKAVA +T+A+F
Sbjct: 151 GGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASF 210
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSEL++K++G+G KLVR
Sbjct: 211 VRVVGSELVKKFIGEGAKLVR 231
>sp|Q6LWR0|PAN_METMP Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain S2 / LL) GN=pan PE=3 SV=1
Length = 407
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/81 (69%), Positives = 73/81 (90%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ QI++IKE VELPL +PE +E++GI PPKGV+LYGPPGTGKTLLAKAVA +T+A+F
Sbjct: 151 GGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASF 210
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+RVVGSEL++K++G+G KLVR
Sbjct: 211 VRVVGSELVKKFIGEGAKLVR 231
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,762,137
Number of Sequences: 539616
Number of extensions: 1611020
Number of successful extensions: 13092
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2514
Number of HSP's successfully gapped in prelim test: 409
Number of HSP's that attempted gapping in prelim test: 10309
Number of HSP's gapped (non-prelim): 3113
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)