Query psy16321
Match_columns 102
No_of_seqs 245 out of 1406
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 18:24:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 99.9 2.4E-24 5.2E-29 149.1 9.1 97 4-100 146-242 (406)
2 KOG0730|consensus 99.9 1.8E-22 4E-27 147.7 8.9 97 3-99 428-524 (693)
3 KOG0733|consensus 99.8 5.6E-21 1.2E-25 139.5 8.5 96 4-99 506-601 (802)
4 KOG0736|consensus 99.8 2.4E-20 5.3E-25 138.6 8.1 97 3-100 666-762 (953)
5 KOG0728|consensus 99.8 1.4E-19 3E-24 121.6 8.2 96 5-100 143-238 (404)
6 KOG0727|consensus 99.8 1.2E-19 2.6E-24 122.1 7.7 97 4-100 150-246 (408)
7 KOG0726|consensus 99.8 9.2E-20 2E-24 124.4 6.8 97 3-99 179-275 (440)
8 KOG0733|consensus 99.8 2.5E-19 5.5E-24 130.9 8.2 96 4-100 185-280 (802)
9 PTZ00454 26S protease regulato 99.8 2E-18 4.2E-23 122.8 9.3 92 4-95 140-231 (398)
10 KOG0738|consensus 99.8 1.4E-18 3.1E-23 121.8 8.0 94 5-99 208-301 (491)
11 PTZ00361 26 proteosome regulat 99.8 5.5E-18 1.2E-22 121.6 9.5 92 4-95 178-269 (438)
12 KOG0652|consensus 99.7 5.5E-18 1.2E-22 114.6 6.9 96 4-99 166-261 (424)
13 KOG0737|consensus 99.7 1.1E-17 2.3E-22 116.4 6.5 94 5-98 88-182 (386)
14 PRK03992 proteasome-activating 99.7 4E-17 8.6E-22 115.9 9.0 91 5-95 127-217 (389)
15 KOG0729|consensus 99.7 3.5E-17 7.6E-22 111.0 8.1 95 4-98 172-266 (435)
16 KOG0739|consensus 99.7 4.6E-17 9.9E-22 111.5 7.1 95 4-99 128-222 (439)
17 KOG0731|consensus 99.7 6.4E-17 1.4E-21 121.1 8.4 93 6-99 308-400 (774)
18 TIGR03689 pup_AAA proteasome A 99.7 8E-17 1.7E-21 117.3 8.4 92 4-95 177-278 (512)
19 TIGR01243 CDC48 AAA family ATP 99.7 1.3E-16 2.9E-21 120.6 9.6 94 4-97 448-541 (733)
20 COG0464 SpoVK ATPases of the A 99.7 1.4E-16 3.1E-21 115.8 8.8 96 4-99 237-332 (494)
21 TIGR01242 26Sp45 26S proteasom 99.7 2.2E-16 4.7E-21 111.2 9.1 87 4-90 117-203 (364)
22 KOG0735|consensus 99.7 1.5E-16 3.3E-21 118.1 8.4 94 6-99 664-757 (952)
23 COG1120 FepC ABC-type cobalami 99.7 3.9E-17 8.4E-22 110.0 3.4 64 37-100 22-85 (258)
24 TIGR01243 CDC48 AAA family ATP 99.7 7.1E-16 1.5E-20 116.7 9.2 91 5-95 174-264 (733)
25 COG3842 PotA ABC-type spermidi 99.6 1.2E-16 2.6E-21 111.7 2.9 62 37-100 25-86 (352)
26 COG1126 GlnQ ABC-type polar am 99.6 1.9E-16 4.1E-21 103.9 3.6 64 37-101 22-87 (240)
27 COG3839 MalK ABC-type sugar tr 99.6 2E-16 4.3E-21 110.1 2.3 63 36-100 22-84 (338)
28 KOG0651|consensus 99.6 2.4E-15 5.2E-20 103.3 7.0 93 6-98 129-221 (388)
29 COG1136 SalX ABC-type antimicr 99.6 6.8E-16 1.5E-20 102.3 3.3 66 36-101 24-93 (226)
30 KOG0732|consensus 99.6 2.3E-15 5.1E-20 115.5 6.6 96 4-99 260-360 (1080)
31 COG1118 CysA ABC-type sulfate/ 99.6 5.7E-16 1.2E-20 106.0 2.8 64 37-100 22-86 (345)
32 KOG0734|consensus 99.6 6.3E-15 1.4E-19 107.1 8.0 94 5-99 300-393 (752)
33 TIGR01241 FtsH_fam ATP-depende 99.6 1.2E-14 2.6E-19 106.0 8.3 90 5-95 51-140 (495)
34 COG1117 PstB ABC-type phosphat 99.6 5.6E-15 1.2E-19 97.1 5.3 75 27-101 15-98 (253)
35 COG1116 TauB ABC-type nitrate/ 99.6 1.6E-15 3.5E-20 101.2 2.3 59 37-100 23-81 (248)
36 COG3638 ABC-type phosphate/pho 99.5 3.6E-15 7.9E-20 98.9 3.5 65 37-101 24-91 (258)
37 COG1124 DppF ABC-type dipeptid 99.5 3E-15 6.6E-20 99.6 2.5 66 37-102 27-93 (252)
38 CHL00195 ycf46 Ycf46; Provisio 99.5 6.3E-14 1.4E-18 102.0 9.1 89 5-96 224-312 (489)
39 COG1125 OpuBA ABC-type proline 99.5 6.7E-15 1.5E-19 98.9 3.7 63 37-99 21-83 (309)
40 KOG0740|consensus 99.5 3E-14 6.5E-19 101.5 6.5 91 5-96 149-239 (428)
41 COG1121 ZnuC ABC-type Mn/Zn tr 99.5 5E-15 1.1E-19 99.6 1.9 61 37-100 24-84 (254)
42 cd03225 ABC_cobalt_CbiO_domain 99.5 9.8E-15 2.1E-19 95.7 3.2 64 37-100 21-84 (211)
43 COG4619 ABC-type uncharacteriz 99.5 2.1E-14 4.5E-19 91.6 4.1 64 37-100 23-86 (223)
44 TIGR00960 3a0501s02 Type II (G 99.5 1.7E-14 3.7E-19 94.9 3.7 64 37-100 23-89 (216)
45 cd03261 ABC_Org_Solvent_Resist 99.5 1.4E-14 3.1E-19 96.4 2.8 64 37-100 20-86 (235)
46 cd03246 ABCC_Protease_Secretio 99.5 1.8E-14 3.9E-19 92.1 3.0 64 37-100 22-85 (173)
47 COG1131 CcmA ABC-type multidru 99.5 2E-14 4.4E-19 98.9 3.4 64 37-101 25-88 (293)
48 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.5 1.8E-14 3.9E-19 94.8 3.0 64 37-100 24-91 (218)
49 PRK10247 putative ABC transpor 99.5 1.9E-14 4.1E-19 95.4 3.1 64 37-100 27-90 (225)
50 COG2884 FtsE Predicted ATPase 99.5 2.1E-14 4.6E-19 92.9 2.9 65 37-101 22-89 (223)
51 cd03244 ABCC_MRP_domain2 Domai 99.5 2.2E-14 4.9E-19 94.5 3.1 64 37-100 24-87 (221)
52 COG0465 HflB ATP-dependent Zn 99.5 1.2E-13 2.5E-18 101.9 7.1 95 5-100 146-240 (596)
53 cd03260 ABC_PstB_phosphate_tra 99.5 2.7E-14 5.8E-19 94.6 3.4 64 37-100 20-90 (227)
54 PRK13647 cbiO cobalt transport 99.5 2.2E-14 4.8E-19 97.7 3.0 64 37-100 25-88 (274)
55 cd03263 ABC_subfamily_A The AB 99.5 2.3E-14 5E-19 94.4 3.0 63 37-100 22-84 (220)
56 TIGR01166 cbiO cobalt transpor 99.5 2.7E-14 5.9E-19 92.3 3.2 64 37-100 12-77 (190)
57 cd03254 ABCC_Glucan_exporter_l 99.5 2.3E-14 4.9E-19 95.0 2.8 64 37-100 23-86 (229)
58 cd03226 ABC_cobalt_CbiO_domain 99.5 2.2E-14 4.7E-19 93.8 2.7 61 37-100 20-80 (205)
59 cd03235 ABC_Metallic_Cations A 99.5 3E-14 6.4E-19 93.6 3.3 59 37-100 19-77 (213)
60 cd03262 ABC_HisP_GlnQ_permease 99.5 2.4E-14 5.2E-19 93.9 2.8 64 37-100 20-85 (213)
61 cd03295 ABC_OpuCA_Osmoprotecti 99.5 2.5E-14 5.3E-19 95.7 2.9 64 37-100 21-84 (242)
62 PRK14250 phosphate ABC transpo 99.5 2.5E-14 5.4E-19 95.7 2.9 64 37-100 23-86 (241)
63 cd03256 ABC_PhnC_transporter A 99.5 3.2E-14 7E-19 94.8 3.4 64 37-100 21-87 (241)
64 PRK13650 cbiO cobalt transport 99.5 2.5E-14 5.5E-19 97.6 2.9 64 37-100 27-90 (279)
65 cd03228 ABCC_MRP_Like The MRP 99.5 2.7E-14 5.9E-19 91.1 2.9 64 37-100 22-85 (171)
66 cd03265 ABC_DrrA DrrA is the A 99.5 3.4E-14 7.3E-19 93.8 3.4 63 37-100 20-82 (220)
67 cd03251 ABCC_MsbA MsbA is an e 99.5 3E-14 6.5E-19 94.7 3.1 64 37-100 22-85 (234)
68 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.5 2.8E-14 6.2E-19 95.0 3.0 64 37-100 23-86 (238)
69 cd03369 ABCC_NFT1 Domain 2 of 99.5 3E-14 6.6E-19 93.2 2.9 64 37-100 28-91 (207)
70 PRK13648 cbiO cobalt transport 99.5 3.4E-14 7.3E-19 96.4 3.2 64 37-100 29-92 (269)
71 cd03230 ABC_DR_subfamily_A Thi 99.5 2.7E-14 5.9E-19 91.3 2.5 63 37-100 20-82 (173)
72 PRK11650 ugpC glycerol-3-phosp 99.5 2.4E-14 5.3E-19 100.8 2.5 62 37-100 24-85 (356)
73 TIGR01188 drrA daunorubicin re 99.5 4.1E-14 8.8E-19 97.6 3.5 63 37-100 13-75 (302)
74 cd03258 ABC_MetN_methionine_tr 99.5 3.8E-14 8.1E-19 94.2 3.3 64 37-100 25-91 (233)
75 CHL00176 ftsH cell division pr 99.5 3E-13 6.5E-18 101.1 8.3 84 5-89 179-262 (638)
76 cd03224 ABC_TM1139_LivF_branch 99.5 2.7E-14 5.9E-19 94.1 2.4 64 37-100 20-84 (222)
77 TIGR03410 urea_trans_UrtE urea 99.5 3.1E-14 6.8E-19 94.4 2.8 64 37-100 20-84 (230)
78 TIGR02315 ABC_phnC phosphonate 99.5 5.1E-14 1.1E-18 94.0 3.7 64 37-100 22-88 (243)
79 PRK10908 cell division protein 99.5 5.3E-14 1.1E-18 92.9 3.7 64 37-100 22-88 (222)
80 cd03257 ABC_NikE_OppD_transpor 99.5 3.1E-14 6.7E-19 94.1 2.6 64 37-100 25-91 (228)
81 cd03252 ABCC_Hemolysin The ABC 99.5 3.4E-14 7.4E-19 94.6 2.8 64 37-100 22-85 (237)
82 cd03264 ABC_drug_resistance_li 99.5 4.8E-14 1E-18 92.5 3.4 62 37-100 20-81 (211)
83 cd03253 ABCC_ATM1_transporter 99.5 4E-14 8.6E-19 94.2 3.1 64 37-100 21-84 (236)
84 TIGR02868 CydC thiol reductant 99.5 3.5E-14 7.6E-19 103.9 3.0 63 37-100 355-417 (529)
85 cd03219 ABC_Mj1267_LivG_branch 99.5 2.9E-14 6.3E-19 94.8 2.3 64 37-100 20-84 (236)
86 cd03229 ABC_Class3 This class 99.5 3.8E-14 8.3E-19 90.9 2.8 64 37-100 20-85 (178)
87 PRK11432 fbpC ferric transport 99.5 3.1E-14 6.7E-19 100.1 2.6 62 37-100 26-87 (351)
88 cd03269 ABC_putative_ATPase Th 99.5 4.6E-14 9.9E-19 92.5 3.2 60 37-100 20-79 (210)
89 cd03245 ABCC_bacteriocin_expor 99.5 4.1E-14 8.8E-19 93.3 3.0 64 37-100 24-87 (220)
90 cd03268 ABC_BcrA_bacitracin_re 99.5 5.1E-14 1.1E-18 92.1 3.4 62 37-100 20-81 (208)
91 cd03247 ABCC_cytochrome_bd The 99.5 3.7E-14 8E-19 91.0 2.7 63 37-100 22-84 (178)
92 cd03292 ABC_FtsE_transporter F 99.5 5E-14 1.1E-18 92.4 3.3 64 37-100 21-87 (214)
93 COG2274 SunT ABC-type bacterio 99.5 4.6E-14 9.9E-19 106.3 3.5 68 33-100 487-556 (709)
94 PRK10253 iron-enterobactin tra 99.4 4.9E-14 1.1E-18 95.5 3.3 64 37-100 27-90 (265)
95 cd03248 ABCC_TAP TAP, the Tran 99.4 5.7E-14 1.2E-18 93.0 3.5 64 37-100 34-97 (226)
96 TIGR02673 FtsE cell division A 99.4 4.9E-14 1.1E-18 92.5 3.2 64 37-100 22-88 (214)
97 COG3840 ThiQ ABC-type thiamine 99.4 1.5E-14 3.2E-19 93.2 0.6 75 25-101 7-81 (231)
98 COG1122 CbiO ABC-type cobalt t 99.4 2.8E-14 6.1E-19 95.4 1.9 65 37-101 24-89 (235)
99 PRK13635 cbiO cobalt transport 99.4 4.3E-14 9.4E-19 96.5 2.8 64 37-100 27-90 (279)
100 cd03266 ABC_NatA_sodium_export 99.4 5E-14 1.1E-18 92.7 3.0 63 37-100 25-87 (218)
101 PRK13537 nodulation ABC transp 99.4 4.9E-14 1.1E-18 97.4 3.1 63 37-100 27-89 (306)
102 TIGR03265 PhnT2 putative 2-ami 99.4 4E-14 8.7E-19 99.6 2.7 62 37-100 24-85 (353)
103 PRK13632 cbiO cobalt transport 99.4 4.1E-14 8.9E-19 96.1 2.6 64 37-100 29-92 (271)
104 TIGR02314 ABC_MetN D-methionin 99.4 3.6E-14 7.8E-19 99.5 2.4 64 37-100 25-91 (343)
105 PRK10575 iron-hydroxamate tran 99.4 5.3E-14 1.1E-18 95.3 3.0 64 37-100 31-94 (265)
106 COG1135 AbcC ABC-type metal io 99.4 5.5E-14 1.2E-18 96.4 3.0 66 36-101 25-93 (339)
107 cd03259 ABC_Carb_Solutes_like 99.4 5.1E-14 1.1E-18 92.5 2.6 62 37-100 20-81 (213)
108 PRK11231 fecE iron-dicitrate t 99.4 6.5E-14 1.4E-18 94.3 3.2 64 37-100 22-85 (255)
109 PF00005 ABC_tran: ABC transpo 99.4 2.2E-14 4.8E-19 88.0 0.8 64 37-100 5-68 (137)
110 PRK15112 antimicrobial peptide 99.4 4.8E-14 1E-18 95.7 2.5 64 37-100 33-96 (267)
111 cd03218 ABC_YhbG The ABC trans 99.4 5.4E-14 1.2E-18 93.3 2.7 64 37-100 20-84 (232)
112 COG4559 ABC-type hemin transpo 99.4 1.2E-13 2.5E-18 90.9 4.1 75 26-100 8-84 (259)
113 TIGR02211 LolD_lipo_ex lipopro 99.4 6.7E-14 1.5E-18 92.3 3.1 64 37-100 25-92 (221)
114 PRK13548 hmuV hemin importer A 99.4 5.9E-14 1.3E-18 94.8 2.8 64 37-100 22-85 (258)
115 cd03214 ABC_Iron-Siderophores_ 99.4 8.4E-14 1.8E-18 89.5 3.4 62 37-98 19-80 (180)
116 PRK11629 lolD lipoprotein tran 99.4 5.8E-14 1.3E-18 93.4 2.7 64 37-100 29-96 (233)
117 COG4148 ModC ABC-type molybdat 99.4 4.6E-14 1E-18 96.0 2.2 76 26-101 7-86 (352)
118 PRK13652 cbiO cobalt transport 99.4 7.2E-14 1.6E-18 95.3 3.2 64 37-100 24-87 (277)
119 PRK09452 potA putrescine/sperm 99.4 5E-14 1.1E-18 99.8 2.4 62 37-100 34-95 (375)
120 PRK11176 lipid transporter ATP 99.4 8.9E-14 1.9E-18 102.7 3.8 64 37-100 363-426 (582)
121 TIGR01288 nodI ATP-binding ABC 99.4 6.3E-14 1.4E-18 96.6 2.8 63 37-100 24-86 (303)
122 PRK09536 btuD corrinoid ABC tr 99.4 5.1E-14 1.1E-18 100.4 2.4 64 37-100 23-86 (402)
123 TIGR03873 F420-0_ABC_ATP propo 99.4 6.9E-14 1.5E-18 94.2 2.8 64 37-100 21-84 (256)
124 PRK10584 putative ABC transpor 99.4 7.4E-14 1.6E-18 92.5 2.8 64 37-100 30-97 (228)
125 PRK11701 phnK phosphonate C-P 99.4 3E-14 6.6E-19 96.1 1.0 64 37-100 26-98 (258)
126 PRK11153 metN DL-methionine tr 99.4 6.2E-14 1.4E-18 98.2 2.5 64 37-100 25-91 (343)
127 PRK14247 phosphate ABC transpo 99.4 9E-14 2E-18 93.3 3.2 64 37-100 23-91 (250)
128 TIGR03608 L_ocin_972_ABC putat 99.4 6.9E-14 1.5E-18 91.3 2.6 64 37-100 18-85 (206)
129 TIGR03864 PQQ_ABC_ATP ABC tran 99.4 9.2E-14 2E-18 92.6 3.2 63 37-100 21-83 (236)
130 PRK13637 cbiO cobalt transport 99.4 6.6E-14 1.4E-18 95.9 2.5 64 37-100 27-92 (287)
131 PRK13646 cbiO cobalt transport 99.4 7.6E-14 1.7E-18 95.6 2.8 64 37-100 27-94 (286)
132 PRK13540 cytochrome c biogenes 99.4 1.2E-13 2.5E-18 90.1 3.5 63 37-100 21-83 (200)
133 TIGR01186 proV glycine betaine 99.4 5.7E-14 1.2E-18 99.1 2.2 64 37-100 13-80 (363)
134 PRK13536 nodulation factor exp 99.4 7E-14 1.5E-18 97.9 2.6 63 37-100 61-123 (340)
135 PRK11607 potG putrescine trans 99.4 6.7E-14 1.4E-18 99.2 2.4 62 37-100 39-100 (377)
136 PRK10895 lipopolysaccharide AB 99.4 7.9E-14 1.7E-18 93.1 2.7 64 37-100 23-87 (241)
137 cd03215 ABC_Carb_Monos_II This 99.4 6E-14 1.3E-18 90.3 2.0 64 37-100 20-84 (182)
138 COG1127 Ttg2A ABC-type transpo 99.4 1.2E-13 2.6E-18 92.0 3.5 71 30-100 19-94 (263)
139 TIGR03797 NHPM_micro_ABC2 NHPM 99.4 7.6E-14 1.6E-18 104.9 2.7 64 37-100 473-536 (686)
140 TIGR03796 NHPM_micro_ABC1 NHPM 99.4 9.5E-14 2.1E-18 104.7 3.2 64 37-100 499-562 (710)
141 cd03296 ABC_CysA_sulfate_impor 99.4 7.1E-14 1.5E-18 93.3 2.3 62 37-100 22-83 (239)
142 TIGR02769 nickel_nikE nickel i 99.4 9.4E-14 2E-18 94.1 2.9 64 37-100 31-97 (265)
143 TIGR03522 GldA_ABC_ATP gliding 99.4 1E-13 2.2E-18 95.6 3.0 63 37-100 22-84 (301)
144 PRK10851 sulfate/thiosulfate t 99.4 6.6E-14 1.4E-18 98.5 2.1 62 37-100 22-83 (353)
145 cd03298 ABC_ThiQ_thiamine_tran 99.4 9E-14 2E-18 91.1 2.6 64 35-100 16-79 (211)
146 TIGR00972 3a0107s01c2 phosphat 99.4 1.4E-13 3E-18 92.3 3.5 64 37-100 21-91 (247)
147 PRK09493 glnQ glutamine ABC tr 99.4 1.1E-13 2.4E-18 92.3 3.0 64 37-100 21-86 (240)
148 PRK13644 cbiO cobalt transport 99.4 1E-13 2.2E-18 94.5 2.8 64 37-100 22-86 (274)
149 COG0410 LivF ABC-type branched 99.4 9.8E-14 2.1E-18 91.8 2.6 63 37-100 23-87 (237)
150 TIGR01193 bacteriocin_ABC ABC- 99.4 1.1E-13 2.5E-18 104.3 3.3 64 37-100 494-557 (708)
151 PRK13640 cbiO cobalt transport 99.4 1.1E-13 2.3E-18 94.7 2.8 64 37-100 27-93 (282)
152 PRK13634 cbiO cobalt transport 99.4 9.5E-14 2.1E-18 95.3 2.6 64 37-100 27-94 (290)
153 PRK11614 livF leucine/isoleuci 99.4 9.3E-14 2E-18 92.6 2.4 64 37-100 25-89 (237)
154 PRK13638 cbiO cobalt transport 99.4 1.1E-13 2.5E-18 93.9 2.9 64 37-100 21-86 (271)
155 COG1223 Predicted ATPase (AAA+ 99.4 7.1E-13 1.5E-17 89.7 6.6 91 4-98 116-206 (368)
156 PRK11000 maltose/maltodextrin 99.4 9E-14 2E-18 98.3 2.4 62 37-100 23-84 (369)
157 PRK13643 cbiO cobalt transport 99.4 1E-13 2.2E-18 95.1 2.5 64 37-100 26-93 (288)
158 PRK13547 hmuV hemin importer A 99.4 1.6E-13 3.6E-18 93.4 3.5 64 37-100 21-92 (272)
159 PRK13649 cbiO cobalt transport 99.4 1.3E-13 2.8E-18 94.1 3.0 64 37-100 27-94 (280)
160 cd03301 ABC_MalK_N The N-termi 99.4 9.1E-14 2E-18 91.2 2.1 62 37-100 20-81 (213)
161 TIGR03258 PhnT 2-aminoethylpho 99.4 1.1E-13 2.4E-18 97.6 2.5 62 37-100 25-88 (362)
162 PRK14267 phosphate ABC transpo 99.4 1.7E-13 3.7E-18 92.1 3.3 64 37-100 24-94 (253)
163 PRK13633 cobalt transporter AT 99.4 1.6E-13 3.4E-18 93.7 3.0 64 37-100 30-94 (280)
164 KOG0730|consensus 99.4 1E-12 2.2E-17 97.1 7.4 90 9-98 184-273 (693)
165 PRK11124 artP arginine transpo 99.4 1.8E-13 3.9E-18 91.4 3.2 64 37-100 22-91 (242)
166 cd03288 ABCC_SUR2 The SUR doma 99.4 1.7E-13 3.6E-18 92.5 3.0 64 37-100 41-104 (257)
167 TIGR02857 CydD thiol reductant 99.4 1.9E-13 4.1E-18 100.1 3.5 64 37-100 342-405 (529)
168 PRK11831 putative ABC transpor 99.4 1.4E-13 3.1E-18 93.4 2.6 64 37-100 27-93 (269)
169 PRK11264 putative amino-acid A 99.4 2.2E-13 4.7E-18 91.4 3.4 64 37-100 23-94 (250)
170 PRK11174 cysteine/glutathione 99.4 1.5E-13 3.2E-18 101.7 2.9 63 37-100 370-432 (588)
171 PRK11300 livG leucine/isoleuci 99.4 1.8E-13 3.8E-18 92.0 2.9 64 37-100 25-89 (255)
172 TIGR00958 3a01208 Conjugate Tr 99.4 2E-13 4.4E-18 103.1 3.5 64 37-100 501-564 (711)
173 PRK13642 cbiO cobalt transport 99.4 1.4E-13 3E-18 93.8 2.3 64 37-100 27-90 (277)
174 PRK13631 cbiO cobalt transport 99.4 1.4E-13 2.9E-18 95.8 2.3 64 37-100 46-125 (320)
175 TIGR01978 sufC FeS assembly AT 99.4 2E-13 4.3E-18 91.1 3.0 64 37-100 20-86 (243)
176 TIGR03411 urea_trans_UrtD urea 99.4 1.9E-13 4.2E-18 91.2 2.9 64 37-100 22-86 (242)
177 TIGR01189 ccmA heme ABC export 99.4 2.3E-13 4.9E-18 88.6 3.1 63 37-100 20-82 (198)
178 PRK11160 cysteine/glutathione 99.4 2.2E-13 4.7E-18 100.8 3.3 64 37-100 360-423 (574)
179 cd03216 ABC_Carb_Monos_I This 99.4 1.5E-13 3.3E-18 87.2 2.2 62 37-98 20-82 (163)
180 TIGR01277 thiQ thiamine ABC tr 99.4 1.4E-13 3E-18 90.5 2.0 63 36-100 17-79 (213)
181 PRK14269 phosphate ABC transpo 99.4 2.4E-13 5.3E-18 91.1 3.3 64 37-100 22-88 (246)
182 cd03293 ABC_NrtD_SsuB_transpor 99.4 8.8E-14 1.9E-18 91.8 1.1 59 37-100 24-82 (220)
183 PRK13639 cbiO cobalt transport 99.4 1.9E-13 4.1E-18 93.1 2.7 64 37-100 22-87 (275)
184 PRK10790 putative multidrug tr 99.4 2.3E-13 4.9E-18 100.9 3.3 64 37-100 361-424 (592)
185 TIGR03375 type_I_sec_LssB type 99.4 2.1E-13 4.6E-18 102.7 3.1 64 37-100 485-548 (694)
186 cd03294 ABC_Pro_Gly_Bertaine T 99.4 1.6E-13 3.5E-18 93.2 2.3 75 26-100 31-111 (269)
187 PRK10771 thiQ thiamine transpo 99.4 1.9E-13 4.1E-18 90.9 2.4 64 35-100 17-80 (232)
188 TIGR03005 ectoine_ehuA ectoine 99.4 2.3E-13 5.1E-18 91.4 2.9 64 37-100 20-96 (252)
189 PRK13636 cbiO cobalt transport 99.4 2.2E-13 4.7E-18 93.2 2.7 64 37-100 26-91 (283)
190 TIGR02770 nickel_nikD nickel i 99.4 2.1E-13 4.5E-18 90.6 2.6 62 37-100 6-71 (230)
191 PRK11144 modC molybdate transp 99.4 1.9E-13 4.2E-18 96.0 2.4 65 36-100 17-85 (352)
192 TIGR02203 MsbA_lipidA lipid A 99.4 3.1E-13 6.8E-18 99.6 3.6 64 37-100 352-415 (571)
193 PRK13538 cytochrome c biogenes 99.4 2.8E-13 6E-18 88.6 2.9 63 37-100 21-83 (204)
194 TIGR02204 MsbA_rel ABC transpo 99.4 3E-13 6.6E-18 99.8 3.5 64 37-100 360-423 (576)
195 PRK13641 cbiO cobalt transport 99.4 2E-13 4.3E-18 93.5 2.3 64 37-100 27-94 (287)
196 PRK11247 ssuB aliphatic sulfon 99.4 2.4E-13 5.2E-18 92.0 2.6 59 37-100 32-90 (257)
197 PRK14235 phosphate transporter 99.4 3.7E-13 8E-18 91.3 3.4 64 37-100 39-109 (267)
198 PRK13651 cobalt transporter AT 99.4 2.4E-13 5.2E-18 94.0 2.6 41 37-77 27-67 (305)
199 cd03267 ABC_NatA_like Similar 99.4 2.8E-13 6.1E-18 90.4 2.8 77 21-98 23-101 (236)
200 cd03231 ABC_CcmA_heme_exporter 99.4 3.3E-13 7.1E-18 88.1 3.0 63 37-100 20-82 (201)
201 COG4167 SapF ABC-type antimicr 99.4 3.6E-13 7.7E-18 87.3 3.1 65 37-101 33-97 (267)
202 PRK15079 oligopeptide ABC tran 99.4 2.1E-13 4.6E-18 95.2 2.1 64 37-100 41-107 (331)
203 PRK13657 cyclic beta-1,2-gluca 99.4 2.9E-13 6.4E-18 100.2 2.9 63 38-100 356-418 (588)
204 TIGR02323 CP_lyasePhnK phospho 99.4 3.3E-13 7.1E-18 90.7 2.8 42 37-78 23-64 (253)
205 TIGR02142 modC_ABC molybdenum 99.4 2.7E-13 5.9E-18 95.3 2.4 65 36-100 16-84 (354)
206 cd03250 ABCC_MRP_domain1 Domai 99.4 2.6E-13 5.6E-18 88.6 2.0 41 37-77 25-65 (204)
207 PRK10419 nikE nickel transport 99.4 4E-13 8.6E-18 91.2 2.9 64 37-100 32-98 (268)
208 PRK13543 cytochrome c biogenes 99.4 3.9E-13 8.5E-18 88.5 2.8 61 37-100 31-91 (214)
209 PRK10619 histidine/lysine/argi 99.4 4.4E-13 9.6E-18 90.4 3.1 64 37-100 25-101 (257)
210 PRK14242 phosphate transporter 99.4 4.7E-13 1E-17 89.9 3.2 64 37-100 26-96 (253)
211 COG4988 CydD ABC-type transpor 99.4 5.7E-13 1.2E-17 97.3 3.8 64 37-100 341-404 (559)
212 PRK10522 multidrug transporter 99.4 4.1E-13 8.8E-18 98.9 3.0 64 37-100 343-406 (547)
213 TIGR02982 heterocyst_DevA ABC 99.4 5.5E-13 1.2E-17 88.0 3.3 64 37-100 25-91 (220)
214 TIGR03771 anch_rpt_ABC anchore 99.4 5.1E-13 1.1E-17 88.5 3.2 58 38-100 1-58 (223)
215 cd03217 ABC_FeS_Assembly ABC-t 99.4 4.3E-13 9.4E-18 87.5 2.8 64 37-100 20-86 (200)
216 cd03233 ABC_PDR_domain1 The pl 99.4 2.6E-13 5.7E-18 88.7 1.8 63 37-100 27-92 (202)
217 PRK10938 putative molybdenum t 99.4 5.6E-13 1.2E-17 96.9 3.7 64 37-100 23-86 (490)
218 cd03213 ABCG_EPDR ABCG transpo 99.4 4.1E-13 8.8E-18 87.3 2.6 61 37-100 29-91 (194)
219 cd03289 ABCC_CFTR2 The CFTR su 99.4 4.9E-13 1.1E-17 91.3 3.2 63 37-100 24-86 (275)
220 PRK14273 phosphate ABC transpo 99.4 7E-13 1.5E-17 89.2 3.8 64 37-100 27-97 (254)
221 cd03290 ABCC_SUR1_N The SUR do 99.4 3.2E-13 7E-18 89.0 2.2 64 37-100 21-88 (218)
222 PRK14270 phosphate ABC transpo 99.3 8.3E-13 1.8E-17 88.7 4.2 64 37-100 24-94 (251)
223 COG1132 MdlB ABC-type multidru 99.3 5.3E-13 1.2E-17 98.5 3.5 64 37-100 349-412 (567)
224 PRK14249 phosphate ABC transpo 99.3 5.9E-13 1.3E-17 89.4 3.4 64 37-100 24-94 (251)
225 PRK13645 cbiO cobalt transport 99.3 2.9E-13 6.2E-18 92.8 1.9 64 37-100 31-99 (289)
226 PRK10070 glycine betaine trans 99.3 2.4E-13 5.2E-18 97.0 1.5 64 37-100 48-115 (400)
227 PRK14253 phosphate ABC transpo 99.3 7.6E-13 1.6E-17 88.8 3.9 64 37-100 23-92 (249)
228 PRK14238 phosphate transporter 99.3 5.7E-13 1.2E-17 90.6 3.3 64 37-100 44-114 (271)
229 cd03234 ABCG_White The White s 99.3 3.6E-13 7.8E-18 89.2 2.2 61 37-100 27-90 (226)
230 PRK10789 putative multidrug tr 99.3 5.5E-13 1.2E-17 98.6 3.4 64 37-100 335-398 (569)
231 PRK10744 pstB phosphate transp 99.3 4.9E-13 1.1E-17 90.3 2.9 64 37-100 33-103 (260)
232 PRK11308 dppF dipeptide transp 99.3 3.2E-13 7E-18 94.1 2.0 64 37-100 35-101 (327)
233 PRK14259 phosphate ABC transpo 99.3 5.4E-13 1.2E-17 90.6 3.1 64 37-100 33-103 (269)
234 KOG0058|consensus 99.3 7.8E-13 1.7E-17 98.6 4.1 67 34-100 483-551 (716)
235 PRK14262 phosphate ABC transpo 99.3 6E-13 1.3E-17 89.3 3.3 64 37-100 23-93 (250)
236 cd03223 ABCD_peroxisomal_ALDP 99.3 3.8E-13 8.2E-18 85.6 2.2 40 37-76 21-60 (166)
237 PLN00020 ribulose bisphosphate 99.3 2.5E-12 5.4E-17 90.7 6.4 62 38-99 143-204 (413)
238 PRK15056 manganese/iron transp 99.3 3.4E-13 7.4E-18 91.7 2.0 61 37-100 27-87 (272)
239 PRK03695 vitamin B12-transport 99.3 5.7E-13 1.2E-17 89.5 3.0 64 36-100 15-78 (248)
240 PRK15093 antimicrobial peptide 99.3 5.5E-13 1.2E-17 93.0 3.0 65 37-101 27-99 (330)
241 TIGR01842 type_I_sec_PrtD type 99.3 5.6E-13 1.2E-17 98.0 3.2 64 37-100 338-401 (544)
242 PRK09544 znuC high-affinity zi 99.3 4.3E-13 9.3E-18 90.4 2.2 40 37-76 24-63 (251)
243 PRK13539 cytochrome c biogenes 99.3 6.4E-13 1.4E-17 87.1 2.9 60 37-99 22-81 (207)
244 PRK14240 phosphate transporter 99.3 6.8E-13 1.5E-17 89.0 3.1 64 37-100 23-93 (250)
245 TIGR01846 type_I_sec_HlyB type 99.3 6.8E-13 1.5E-17 100.0 3.2 64 37-100 477-540 (694)
246 TIGR02324 CP_lyasePhnL phospho 99.3 7E-13 1.5E-17 87.6 2.9 40 37-76 28-67 (224)
247 PRK14274 phosphate ABC transpo 99.3 1.2E-12 2.6E-17 88.3 3.9 64 37-100 32-102 (259)
248 cd03232 ABC_PDR_domain2 The pl 99.3 8E-13 1.7E-17 85.8 2.9 60 37-100 27-88 (192)
249 PRK09473 oppD oligopeptide tra 99.3 6.3E-13 1.4E-17 92.8 2.5 64 37-100 36-106 (330)
250 cd03300 ABC_PotA_N PotA is an 99.3 7.9E-13 1.7E-17 88.0 2.9 62 37-100 20-81 (232)
251 cd03297 ABC_ModC_molybdenum_tr 99.3 6.6E-13 1.4E-17 87.3 2.5 65 35-100 16-84 (214)
252 TIGR00968 3a0106s01 sulfate AB 99.3 6.8E-13 1.5E-17 88.6 2.5 62 37-100 20-81 (237)
253 PRK10418 nikD nickel transport 99.3 4.7E-13 1E-17 90.2 1.7 62 37-100 23-88 (254)
254 PRK14248 phosphate ABC transpo 99.3 7.9E-13 1.7E-17 89.7 2.8 64 37-100 41-111 (268)
255 PRK14241 phosphate transporter 99.3 8.4E-13 1.8E-17 89.1 2.9 64 37-100 24-94 (258)
256 PRK09700 D-allose transporter 99.3 6.6E-13 1.4E-17 97.0 2.6 64 37-100 25-89 (510)
257 PRK11248 tauB taurine transpor 99.3 7.2E-13 1.6E-17 89.4 2.6 41 37-77 21-61 (255)
258 PRK11022 dppD dipeptide transp 99.3 7.6E-13 1.6E-17 92.2 2.7 64 37-100 27-98 (326)
259 PRK14244 phosphate ABC transpo 99.3 1.7E-12 3.8E-17 87.2 4.3 64 37-100 25-95 (251)
260 PRK14272 phosphate ABC transpo 99.3 9.2E-13 2E-17 88.4 2.9 64 37-100 24-94 (252)
261 PRK09984 phosphonate/organopho 99.3 1.1E-12 2.4E-17 88.6 3.3 64 37-100 24-95 (262)
262 cd03299 ABC_ModC_like Archeal 99.3 8.2E-13 1.8E-17 88.1 2.6 62 37-100 19-80 (235)
263 PRK10762 D-ribose transporter 99.3 5.5E-13 1.2E-17 97.3 1.9 64 37-100 24-88 (501)
264 cd00267 ABC_ATPase ABC (ATP-bi 99.3 1E-12 2.2E-17 82.7 2.8 62 37-98 19-80 (157)
265 PRK14268 phosphate ABC transpo 99.3 1.1E-12 2.4E-17 88.5 3.2 64 37-100 32-102 (258)
266 PRK14256 phosphate ABC transpo 99.3 1.3E-12 2.9E-17 87.7 3.4 64 37-100 24-94 (252)
267 PRK13541 cytochrome c biogenes 99.3 1E-12 2.2E-17 85.4 2.7 43 36-78 19-61 (195)
268 PRK14271 phosphate ABC transpo 99.3 1.3E-12 2.9E-17 89.1 3.3 64 37-100 41-110 (276)
269 PRK14263 phosphate ABC transpo 99.3 1.3E-12 2.8E-17 88.5 3.1 64 37-100 28-98 (261)
270 PRK14237 phosphate transporter 99.3 1.7E-12 3.8E-17 88.0 3.7 64 37-100 40-110 (267)
271 TIGR01194 cyc_pep_trnsptr cycl 99.3 1.2E-12 2.6E-17 96.6 3.1 64 37-100 362-425 (555)
272 TIGR01192 chvA glucan exporter 99.3 1.2E-12 2.5E-17 97.2 3.1 64 37-100 355-418 (585)
273 PRK14251 phosphate ABC transpo 99.3 1.8E-12 3.8E-17 87.1 3.6 64 37-100 24-94 (251)
274 TIGR03740 galliderm_ABC gallid 99.3 1.1E-12 2.5E-17 86.6 2.6 60 37-100 20-79 (223)
275 PRK14261 phosphate ABC transpo 99.3 1.2E-12 2.6E-17 88.0 2.7 64 37-100 26-96 (253)
276 PRK15439 autoinducer 2 ABC tra 99.3 1.1E-12 2.3E-17 96.0 2.6 64 37-100 31-95 (510)
277 TIGR03415 ABC_choXWV_ATP choli 99.3 9.2E-13 2E-17 93.5 2.1 64 37-100 44-115 (382)
278 PRK14243 phosphate transporter 99.3 2.9E-12 6.2E-17 86.9 4.4 64 37-100 30-100 (264)
279 COG1137 YhbG ABC-type (unclass 99.3 8.8E-14 1.9E-18 90.7 -2.9 65 37-101 24-89 (243)
280 TIGR01184 ntrCD nitrate transp 99.3 1.6E-12 3.4E-17 86.5 2.8 41 37-77 5-45 (230)
281 COG4181 Predicted ABC-type tra 99.3 1.8E-12 3.8E-17 83.1 2.9 64 37-100 30-97 (228)
282 PRK14265 phosphate ABC transpo 99.3 2.6E-12 5.7E-17 87.5 3.9 64 37-100 40-110 (274)
283 PRK14275 phosphate ABC transpo 99.3 1.8E-12 3.9E-17 88.8 3.1 64 37-100 59-129 (286)
284 CHL00131 ycf16 sulfate ABC tra 99.3 1.2E-12 2.6E-17 87.8 2.2 41 37-77 27-69 (252)
285 PRK09580 sufC cysteine desulfu 99.3 1.7E-12 3.7E-17 86.9 2.9 64 37-100 21-87 (248)
286 PRK14266 phosphate ABC transpo 99.3 2.2E-12 4.7E-17 86.6 3.3 64 37-100 23-93 (250)
287 PRK14254 phosphate ABC transpo 99.3 1.6E-12 3.5E-17 89.1 2.7 64 37-100 59-129 (285)
288 PRK14246 phosphate ABC transpo 99.3 1.8E-12 4E-17 87.6 2.9 64 37-100 30-99 (257)
289 PRK14239 phosphate transporter 99.3 2.7E-12 5.9E-17 86.2 3.6 64 37-100 25-95 (252)
290 COG4618 ArpD ABC-type protease 99.3 1.9E-12 4.1E-17 93.7 3.0 64 37-100 356-419 (580)
291 TIGR02881 spore_V_K stage V sp 99.3 1.6E-11 3.5E-16 83.1 7.3 84 5-89 2-95 (261)
292 PRK14245 phosphate ABC transpo 99.3 3.6E-12 7.7E-17 85.6 4.1 64 37-100 23-93 (250)
293 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.3 1.2E-12 2.6E-17 81.6 1.7 41 37-77 20-60 (144)
294 PRK10762 D-ribose transporter 99.3 1.4E-12 3.1E-17 95.1 2.2 64 37-100 272-336 (501)
295 PRK09700 D-allose transporter 99.3 1.3E-12 2.8E-17 95.5 2.0 63 37-99 283-346 (510)
296 PRK14255 phosphate ABC transpo 99.3 2.2E-12 4.8E-17 86.6 3.0 64 37-100 25-95 (252)
297 COG1123 ATPase components of v 99.3 2.1E-12 4.5E-17 94.4 3.0 65 37-101 311-377 (539)
298 PRK10982 galactose/methyl gala 99.3 1.3E-12 2.9E-17 95.0 2.0 64 37-100 18-82 (491)
299 PRK14260 phosphate ABC transpo 99.3 3.7E-12 7.9E-17 86.0 4.0 64 37-100 27-97 (259)
300 PRK10261 glutathione transport 99.3 1.5E-12 3.2E-17 97.3 2.1 64 37-100 344-410 (623)
301 COG0411 LivG ABC-type branched 99.3 4.5E-13 9.8E-18 89.3 -0.6 65 36-100 23-88 (250)
302 PRK14236 phosphate transporter 99.3 3.4E-12 7.4E-17 86.8 3.6 64 37-100 45-115 (272)
303 PRK13549 xylose transporter AT 99.3 1.8E-12 4E-17 94.7 2.4 64 37-100 25-91 (506)
304 CHL00181 cbbX CbbX; Provisiona 99.3 1.8E-11 3.9E-16 84.1 7.0 80 9-89 23-112 (287)
305 cd03237 ABC_RNaseL_inhibitor_d 99.3 3E-12 6.5E-17 86.1 3.1 39 38-76 20-58 (246)
306 PRK14264 phosphate ABC transpo 99.3 3.2E-12 6.9E-17 88.3 3.2 64 37-100 65-135 (305)
307 PRK14252 phosphate ABC transpo 99.3 3.6E-12 7.7E-17 86.3 3.2 64 37-100 36-108 (265)
308 TIGR02880 cbbX_cfxQ probable R 99.3 2.7E-11 5.8E-16 83.1 7.5 82 7-89 19-111 (284)
309 TIGR02633 xylG D-xylose ABC tr 99.3 2.5E-12 5.5E-17 93.7 2.6 64 37-100 21-87 (500)
310 cd03291 ABCC_CFTR1 The CFTR su 99.3 2.1E-12 4.5E-17 88.5 1.9 40 37-76 57-96 (282)
311 COG4525 TauB ABC-type taurine 99.3 4.1E-12 8.8E-17 83.0 3.1 43 37-79 25-67 (259)
312 KOG0055|consensus 99.3 4.6E-12 9.9E-17 98.9 4.0 64 37-100 373-436 (1228)
313 PRK11288 araG L-arabinose tran 99.3 1.7E-12 3.7E-17 94.7 1.5 64 37-100 24-88 (501)
314 PLN03232 ABC transporter C fam 99.3 3.3E-12 7.1E-17 102.7 3.2 64 37-100 1256-1319(1495)
315 PRK15134 microcin C ABC transp 99.2 2.9E-12 6.3E-17 94.0 2.6 64 37-100 29-101 (529)
316 PTZ00265 multidrug resistance 99.2 4.7E-12 1E-16 101.6 3.9 64 37-100 405-469 (1466)
317 COG4987 CydC ABC-type transpor 99.2 7.3E-12 1.6E-16 91.1 4.5 74 27-100 346-421 (573)
318 KOG0057|consensus 99.2 4.1E-12 8.8E-17 92.5 3.2 63 37-100 372-434 (591)
319 PRK14258 phosphate ABC transpo 99.2 5.9E-12 1.3E-16 85.1 3.8 64 37-100 27-97 (261)
320 KOG0741|consensus 99.2 3.1E-11 6.7E-16 88.1 7.4 90 10-99 222-313 (744)
321 COG4604 CeuD ABC-type enteroch 99.2 8.9E-12 1.9E-16 81.4 4.1 63 37-99 21-83 (252)
322 PRK15439 autoinducer 2 ABC tra 99.2 2.9E-12 6.3E-17 93.7 2.0 64 37-100 283-347 (510)
323 PLN03130 ABC transporter C fam 99.2 4.2E-12 9E-17 102.6 3.0 64 37-100 1259-1322(1622)
324 PRK14257 phosphate ABC transpo 99.2 6.1E-12 1.3E-16 87.8 3.3 64 37-100 102-172 (329)
325 PRK11819 putative ABC transpor 99.2 2.6E-12 5.7E-17 94.8 1.4 40 37-76 27-66 (556)
326 COG4152 ABC-type uncharacteriz 99.2 6.8E-12 1.5E-16 84.1 3.2 60 37-100 22-81 (300)
327 PRK11288 araG L-arabinose tran 99.2 2.7E-12 5.9E-17 93.7 1.3 64 37-100 273-337 (501)
328 cd03222 ABC_RNaseL_inhibitor T 99.2 7.4E-12 1.6E-16 80.6 3.1 41 38-78 20-60 (177)
329 PRK13549 xylose transporter AT 99.2 4.4E-12 9.5E-17 92.7 2.2 64 37-100 282-347 (506)
330 TIGR02633 xylG D-xylose ABC tr 99.2 4.2E-12 9.1E-17 92.6 2.0 64 37-100 280-345 (500)
331 PTZ00243 ABC transporter; Prov 99.2 6E-12 1.3E-16 101.5 3.0 64 37-100 1330-1393(1560)
332 PRK15134 microcin C ABC transp 99.2 5.5E-12 1.2E-16 92.6 2.5 63 37-100 306-371 (529)
333 TIGR03269 met_CoM_red_A2 methy 99.2 8.7E-12 1.9E-16 91.4 3.5 64 37-100 304-374 (520)
334 PTZ00265 multidrug resistance 99.2 7.8E-12 1.7E-16 100.4 3.4 64 37-100 1188-1305(1466)
335 KOG0743|consensus 99.2 3.6E-11 7.8E-16 86.0 6.3 73 6-78 198-270 (457)
336 COG4133 CcmA ABC-type transpor 99.2 1.1E-11 2.3E-16 80.2 3.4 46 33-78 16-63 (209)
337 COG1101 PhnK ABC-type uncharac 99.2 1.2E-11 2.5E-16 81.7 3.5 65 37-101 26-90 (263)
338 PRK10733 hflB ATP-dependent me 99.2 9E-11 1.9E-15 88.2 8.6 87 5-92 148-234 (644)
339 PRK10982 galactose/methyl gala 99.2 5E-12 1.1E-16 92.1 1.9 64 37-100 268-332 (491)
340 TIGR00957 MRP_assoc_pro multi 99.2 7.3E-12 1.6E-16 100.9 2.9 64 37-100 1306-1369(1522)
341 PRK10938 putative molybdenum t 99.2 9.2E-12 2E-16 90.6 3.1 64 37-100 280-345 (490)
342 COG4586 ABC-type uncharacteriz 99.2 2.4E-11 5.1E-16 82.6 4.8 60 37-97 44-103 (325)
343 PRK15064 ABC transporter ATP-b 99.2 5.3E-12 1.1E-16 92.7 1.9 40 37-76 339-378 (530)
344 TIGR03719 ABC_ABC_ChvD ATP-bin 99.2 4.7E-12 1E-16 93.4 1.4 40 37-76 25-64 (552)
345 COG4136 ABC-type uncharacteriz 99.2 2E-11 4.3E-16 77.0 3.9 63 36-100 21-86 (213)
346 COG4555 NatA ABC-type Na+ tran 99.2 1.5E-11 3.3E-16 80.4 3.5 60 37-97 22-81 (245)
347 PRK15064 ABC transporter ATP-b 99.2 4.9E-12 1.1E-16 92.9 1.3 40 37-76 21-60 (530)
348 KOG0056|consensus 99.2 1.6E-11 3.5E-16 89.2 3.6 64 37-100 558-621 (790)
349 PRK15177 Vi polysaccharide exp 99.2 1.1E-11 2.4E-16 81.7 2.6 39 37-75 7-45 (213)
350 PRK10261 glutathione transport 99.2 4.9E-12 1.1E-16 94.5 1.0 40 37-76 36-75 (623)
351 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.2 1.7E-11 3.7E-16 81.3 3.1 56 22-77 25-82 (224)
352 cd03236 ABC_RNaseL_inhibitor_d 99.2 1.8E-11 4E-16 82.8 3.3 36 40-75 23-58 (255)
353 COG1129 MglA ABC-type sugar tr 99.2 1.2E-11 2.7E-16 89.8 2.5 66 36-101 27-93 (500)
354 COG0396 sufC Cysteine desulfur 99.2 2.3E-11 5E-16 80.7 3.5 62 37-100 24-90 (251)
355 COG1119 ModF ABC-type molybden 99.2 3E-11 6.4E-16 80.8 3.9 71 28-98 40-113 (257)
356 PRK10535 macrolide transporter 99.2 1.4E-11 3.1E-16 92.4 2.5 64 37-100 28-95 (648)
357 COG3845 ABC-type uncharacteriz 99.2 2.1E-11 4.6E-16 87.9 3.1 65 36-100 23-88 (501)
358 PRK11819 putative ABC transpor 99.2 1.5E-11 3.2E-16 90.9 2.3 40 37-76 344-383 (556)
359 PRK13546 teichoic acids export 99.1 2.5E-11 5.3E-16 82.5 3.1 41 36-76 43-83 (264)
360 COG1134 TagH ABC-type polysacc 99.1 2.4E-11 5.2E-16 81.1 3.0 42 37-78 47-88 (249)
361 TIGR03719 ABC_ABC_ChvD ATP-bin 99.1 1.5E-11 3.2E-16 90.8 2.0 40 37-76 342-381 (552)
362 COG4608 AppF ABC-type oligopep 99.1 5.3E-11 1.2E-15 80.5 3.9 43 36-78 32-74 (268)
363 TIGR03269 met_CoM_red_A2 methy 99.1 3E-11 6.5E-16 88.5 2.8 40 37-76 20-61 (520)
364 PRK13409 putative ATPase RIL; 99.1 3.3E-11 7.2E-16 89.7 3.0 40 37-76 359-398 (590)
365 PLN03073 ABC transporter F fam 99.1 1.9E-11 4.2E-16 92.6 1.5 39 37-75 529-567 (718)
366 COG0444 DppD ABC-type dipeptid 99.1 5.2E-11 1.1E-15 82.2 3.4 66 36-101 24-98 (316)
367 TIGR00954 3a01203 Peroxysomal 99.1 2.4E-11 5.2E-16 91.4 1.8 39 37-75 472-510 (659)
368 PRK11147 ABC transporter ATPas 99.1 2.8E-11 6.1E-16 90.7 2.1 40 37-76 339-378 (635)
369 COG4107 PhnK ABC-type phosphon 99.1 8.2E-11 1.8E-15 75.9 3.8 66 36-101 25-99 (258)
370 KOG0055|consensus 99.1 7.6E-11 1.6E-15 92.3 4.3 68 34-101 1005-1074(1228)
371 PRK10636 putative ABC transpor 99.1 2.1E-11 4.5E-16 91.5 1.1 40 37-76 332-371 (638)
372 TIGR01271 CFTR_protein cystic 99.1 4.2E-11 9E-16 96.4 2.8 63 37-100 1239-1301(1490)
373 TIGR01257 rim_protein retinal- 99.1 4E-11 8.6E-16 98.4 2.7 63 37-100 1959-2021(2272)
374 COG4175 ProV ABC-type proline/ 99.1 9.7E-11 2.1E-15 81.1 3.8 64 37-100 48-115 (386)
375 PLN03211 ABC transporter G-25; 99.1 4.2E-11 9.1E-16 90.1 2.2 64 33-100 82-149 (659)
376 PRK10636 putative ABC transpor 99.1 7E-11 1.5E-15 88.6 3.0 40 37-76 21-60 (638)
377 PF05496 RuvB_N: Holliday junc 99.1 5.9E-10 1.3E-14 74.1 6.6 66 4-77 19-84 (233)
378 PRK11147 ABC transporter ATPas 99.1 1E-10 2.2E-15 87.7 3.0 40 37-76 23-62 (635)
379 TIGR00955 3a01204 The Eye Pigm 99.1 1.1E-10 2.4E-15 87.3 3.2 61 37-100 45-108 (617)
380 TIGR01257 rim_protein retinal- 99.0 8.7E-11 1.9E-15 96.5 2.5 63 37-100 950-1012(2272)
381 cd03278 ABC_SMC_barmotin Barmo 99.0 6.1E-11 1.3E-15 77.5 1.2 64 37-101 17-86 (197)
382 TIGR01187 potA spermidine/putr 99.0 8.7E-11 1.9E-15 81.9 1.7 51 48-100 1-51 (325)
383 COG4778 PhnL ABC-type phosphon 99.0 2.9E-10 6.2E-15 73.1 3.7 64 36-99 30-101 (235)
384 COG1123 ATPase components of v 99.0 2.4E-10 5.3E-15 83.7 3.7 66 36-101 28-101 (539)
385 cd00820 PEPCK_HprK Phosphoenol 99.0 6.5E-11 1.4E-15 70.5 0.6 28 37-64 9-36 (107)
386 COG0488 Uup ATPase components 99.0 1.4E-10 3.1E-15 85.3 2.2 49 29-77 13-63 (530)
387 PF00004 AAA: ATPase family as 99.0 1.1E-09 2.3E-14 66.2 5.7 48 46-93 1-48 (132)
388 KOG0744|consensus 99.0 4.8E-10 1E-14 78.0 4.3 88 8-95 141-238 (423)
389 PLN03140 ABC transporter G fam 99.0 1.6E-10 3.5E-15 92.9 2.3 60 38-100 186-248 (1470)
390 COG4598 HisP ABC-type histidin 99.0 7.6E-10 1.6E-14 71.8 4.8 76 26-101 13-103 (256)
391 TIGR03238 dnd_assoc_3 dnd syst 99.0 3.8E-10 8.1E-15 81.9 3.6 60 37-101 26-88 (504)
392 PRK13545 tagH teichoic acids e 99.0 2.8E-10 6.1E-15 83.6 2.9 40 37-76 44-83 (549)
393 COG4138 BtuD ABC-type cobalami 99.0 1.3E-09 2.8E-14 70.5 5.0 63 37-100 19-81 (248)
394 COG4172 ABC-type uncharacteriz 99.0 7.1E-10 1.5E-14 79.1 3.9 65 37-102 307-374 (534)
395 COG4674 Uncharacterized ABC-ty 98.9 2E-10 4.4E-15 75.0 1.0 64 37-100 25-90 (249)
396 TIGR00956 3a01205 Pleiotropic 98.9 3.6E-10 7.9E-15 90.7 2.6 59 38-100 784-845 (1394)
397 TIGR01271 CFTR_protein cystic 98.9 3E-10 6.6E-15 91.6 1.9 40 37-76 446-485 (1490)
398 TIGR00957 MRP_assoc_pro multi 98.9 3.4E-10 7.3E-15 91.5 2.0 40 37-76 658-697 (1522)
399 COG4615 PvdE ABC-type sideroph 98.9 8.1E-10 1.7E-14 78.7 3.3 43 37-79 343-385 (546)
400 cd03238 ABC_UvrA The excision 98.9 7.4E-10 1.6E-14 71.3 2.7 29 37-65 15-43 (176)
401 TIGR00956 3a01205 Pleiotropic 98.9 4E-10 8.7E-15 90.4 1.4 62 38-100 82-147 (1394)
402 PRK04195 replication factor C 98.9 5.1E-09 1.1E-13 76.5 7.0 66 4-78 9-74 (482)
403 PRK13409 putative ATPase RIL; 98.9 1E-09 2.2E-14 81.8 3.4 37 39-75 95-131 (590)
404 TIGR00635 ruvB Holliday juncti 98.9 5.3E-09 1.2E-13 71.9 6.6 60 6-73 1-60 (305)
405 COG5265 ATM1 ABC-type transpor 98.9 2.3E-09 5.1E-14 76.6 4.6 64 37-100 283-346 (497)
406 PLN03130 ABC transporter C fam 98.9 7.5E-10 1.6E-14 89.9 2.1 39 37-75 637-676 (1622)
407 PTZ00243 ABC transporter; Prov 98.9 8.4E-10 1.8E-14 89.4 2.0 39 37-75 680-718 (1560)
408 COG4161 ArtP ABC-type arginine 98.9 4.5E-09 9.9E-14 67.2 4.9 65 37-101 22-92 (242)
409 smart00763 AAA_PrkA PrkA AAA d 98.9 8.8E-09 1.9E-13 72.6 6.6 65 5-76 46-118 (361)
410 TIGR00235 udk uridine kinase. 98.8 3.9E-09 8.4E-14 69.2 4.0 29 41-69 4-32 (207)
411 PLN03140 ABC transporter G fam 98.8 1.6E-09 3.4E-14 87.4 2.5 61 37-100 900-962 (1470)
412 KOG0054|consensus 98.8 2.3E-09 4.9E-14 85.4 3.1 71 30-100 1151-1223(1381)
413 PLN03232 ABC transporter C fam 98.8 7.9E-10 1.7E-14 89.3 0.4 36 37-72 637-672 (1495)
414 cd01130 VirB11-like_ATPase Typ 98.8 5E-09 1.1E-13 67.8 4.1 37 38-74 20-56 (186)
415 TIGR00390 hslU ATP-dependent p 98.8 2.4E-08 5.2E-13 71.8 7.1 76 10-85 13-90 (441)
416 COG0466 Lon ATP-dependent Lon 98.8 8.2E-09 1.8E-13 77.6 4.7 64 9-79 323-386 (782)
417 CHL00206 ycf2 Ycf2; Provisiona 98.8 1.2E-08 2.7E-13 83.0 5.9 52 30-81 1617-1668(2281)
418 PRK10078 ribose 1,5-bisphospho 98.8 8.5E-09 1.8E-13 66.6 3.9 28 43-70 2-29 (186)
419 KOG0059|consensus 98.8 4.9E-09 1.1E-13 81.3 3.1 64 37-100 585-649 (885)
420 PRK09825 idnK D-gluconate kina 98.8 1.5E-08 3.4E-13 65.1 5.0 29 42-70 2-30 (176)
421 COG0488 Uup ATPase components 98.8 6E-09 1.3E-13 76.8 3.4 39 37-75 342-380 (530)
422 TIGR00763 lon ATP-dependent pr 98.8 1.9E-08 4E-13 77.2 6.1 61 10-77 321-381 (775)
423 KOG0060|consensus 98.8 4.1E-09 8.9E-14 77.6 2.3 39 37-75 455-493 (659)
424 PRK00080 ruvB Holliday junctio 98.7 3E-08 6.5E-13 69.2 6.3 62 5-74 21-82 (328)
425 cd03283 ABC_MutS-like MutS-lik 98.7 6.1E-09 1.3E-13 68.2 2.6 34 34-67 16-49 (199)
426 PLN03073 ABC transporter F fam 98.7 5.8E-09 1.3E-13 79.3 2.6 34 34-67 192-227 (718)
427 cd03273 ABC_SMC2_euk Eukaryoti 98.7 4.5E-09 9.7E-14 70.8 1.6 28 43-70 25-52 (251)
428 KOG0064|consensus 98.7 7.7E-09 1.7E-13 75.9 2.7 34 38-71 503-536 (728)
429 TIGR02858 spore_III_AA stage I 98.7 1.4E-08 3.1E-13 69.3 3.5 57 44-100 112-169 (270)
430 COG2255 RuvB Holliday junction 98.7 4.9E-08 1.1E-12 66.9 6.1 60 4-71 21-80 (332)
431 PRK05201 hslU ATP-dependent pr 98.7 5E-08 1.1E-12 70.2 6.3 76 10-85 16-93 (443)
432 PF05673 DUF815: Protein of un 98.7 4.8E-08 1E-12 65.7 5.7 58 4-70 22-79 (249)
433 COG4178 ABC-type uncharacteriz 98.7 1.4E-08 3.1E-13 75.5 3.1 41 37-77 413-453 (604)
434 KOG0061|consensus 98.7 2E-08 4.3E-13 75.3 3.7 59 39-100 52-113 (613)
435 PRK12402 replication factor C 98.7 5.1E-08 1.1E-12 67.6 5.4 52 4-68 10-61 (337)
436 PHA02544 44 clamp loader, smal 98.7 8.4E-08 1.8E-12 66.3 6.4 63 4-78 16-78 (316)
437 PRK14961 DNA polymerase III su 98.7 6.3E-08 1.4E-12 68.5 5.8 54 3-68 10-63 (363)
438 PF13207 AAA_17: AAA domain; P 98.6 3.9E-08 8.5E-13 58.9 3.9 30 45-74 1-30 (121)
439 PF03215 Rad17: Rad17 cell cyc 98.6 7.6E-08 1.6E-12 71.0 6.1 62 4-73 14-75 (519)
440 PLN03025 replication factor C 98.6 7.1E-08 1.5E-12 67.1 5.5 51 4-67 8-58 (319)
441 PRK14962 DNA polymerase III su 98.6 7E-08 1.5E-12 70.5 5.6 54 4-69 9-62 (472)
442 TIGR00602 rad24 checkpoint pro 98.6 6E-08 1.3E-12 72.9 5.3 59 4-70 79-137 (637)
443 KOG2004|consensus 98.6 1E-07 2.2E-12 72.0 6.4 64 9-79 411-474 (906)
444 cd03279 ABC_sbcCD SbcCD and ot 98.6 7.7E-09 1.7E-13 68.1 0.5 25 42-66 27-51 (213)
445 PRK10787 DNA-binding ATP-depen 98.6 9.4E-08 2E-12 73.4 6.2 62 10-78 323-384 (784)
446 cd03240 ABC_Rad50 The catalyti 98.6 9.3E-09 2E-13 67.5 0.6 33 38-71 18-54 (204)
447 PRK15455 PrkA family serine pr 98.6 1.1E-07 2.5E-12 70.7 6.1 59 4-69 71-129 (644)
448 PRK13342 recombination factor 98.6 1E-07 2.2E-12 68.5 5.7 61 4-77 7-70 (413)
449 PRK14958 DNA polymerase III su 98.6 8.5E-08 1.8E-12 70.6 5.4 55 3-69 10-64 (509)
450 smart00382 AAA ATPases associa 98.6 8.4E-08 1.8E-12 57.4 4.5 35 43-77 2-39 (148)
451 cd03270 ABC_UvrA_I The excisio 98.6 4.5E-08 9.7E-13 65.1 3.3 24 37-60 15-38 (226)
452 PF13555 AAA_29: P-loop contai 98.6 8.8E-08 1.9E-12 51.7 3.8 34 37-70 16-50 (62)
453 cd03243 ABC_MutS_homologs The 98.6 4E-08 8.7E-13 64.2 2.9 30 36-65 22-51 (202)
454 PRK07940 DNA polymerase III su 98.6 1.4E-07 3E-12 67.6 5.8 61 6-69 2-62 (394)
455 PRK14964 DNA polymerase III su 98.6 1.3E-07 2.9E-12 69.2 5.5 53 3-67 7-59 (491)
456 PRK14956 DNA polymerase III su 98.6 1.3E-07 2.9E-12 69.0 5.4 55 3-69 12-66 (484)
457 cd00009 AAA The AAA+ (ATPases 98.6 3.7E-07 7.9E-12 55.1 6.6 36 42-77 18-56 (151)
458 PRK14963 DNA polymerase III su 98.6 1.3E-07 2.8E-12 69.6 5.4 54 3-68 8-61 (504)
459 KOG0989|consensus 98.6 1.5E-07 3.2E-12 65.1 5.3 52 5-69 32-83 (346)
460 PRK05342 clpX ATP-dependent pr 98.6 1.7E-07 3.6E-12 67.5 5.7 70 10-79 72-144 (412)
461 KOG0927|consensus 98.5 5.3E-08 1.2E-12 71.5 3.1 40 37-76 410-449 (614)
462 PRK00300 gmk guanylate kinase; 98.5 8E-08 1.7E-12 62.6 3.6 28 41-68 3-30 (205)
463 PRK08118 topology modulation p 98.5 9E-08 2E-12 61.1 3.7 30 45-74 3-32 (167)
464 cd03272 ABC_SMC3_euk Eukaryoti 98.5 7.3E-08 1.6E-12 64.3 3.5 25 43-67 23-47 (243)
465 PRK05480 uridine/cytidine kina 98.5 1.4E-07 3.1E-12 61.8 4.7 28 41-68 4-31 (209)
466 KOG0065|consensus 98.5 3.4E-08 7.4E-13 78.2 2.0 69 30-100 802-873 (1391)
467 COG2256 MGS1 ATPase related to 98.5 2.3E-07 4.9E-12 66.2 5.7 60 4-76 19-81 (436)
468 PRK09270 nucleoside triphospha 98.5 1.4E-07 3.1E-12 62.8 4.4 32 41-72 31-62 (229)
469 PRK06645 DNA polymerase III su 98.5 2.2E-07 4.7E-12 68.5 5.7 55 3-69 15-69 (507)
470 cd02023 UMPK Uridine monophosp 98.5 1.4E-07 3.1E-12 61.3 4.2 24 45-68 1-24 (198)
471 COG4172 ABC-type uncharacteriz 98.5 9.3E-08 2E-12 68.5 3.5 63 37-101 30-103 (534)
472 PRK14949 DNA polymerase III su 98.5 1.9E-07 4.1E-12 72.2 5.4 56 3-70 10-65 (944)
473 PRK14960 DNA polymerase III su 98.5 2.3E-07 5.1E-12 69.9 5.7 55 3-69 9-63 (702)
474 TIGR02322 phosphon_PhnN phosph 98.5 1.1E-07 2.4E-12 60.8 3.5 27 43-69 1-27 (179)
475 PRK08691 DNA polymerase III su 98.5 2.3E-07 5E-12 70.2 5.5 55 3-69 10-64 (709)
476 PRK10416 signal recognition pa 98.5 2.6E-07 5.7E-12 64.5 5.3 30 41-70 112-141 (318)
477 cd03280 ABC_MutS2 MutS2 homolo 98.5 8.6E-08 1.9E-12 62.6 2.7 29 36-64 20-49 (200)
478 PRK14969 DNA polymerase III su 98.5 2.9E-07 6.3E-12 68.1 5.5 55 3-69 10-64 (527)
479 PRK07261 topology modulation p 98.5 2.1E-07 4.5E-12 59.6 4.0 30 45-74 2-31 (171)
480 TIGR03263 guanyl_kin guanylate 98.5 1.4E-07 3E-12 60.2 3.2 26 43-68 1-26 (180)
481 PRK14952 DNA polymerase III su 98.5 3.4E-07 7.3E-12 68.4 5.5 55 3-69 7-61 (584)
482 KOG0054|consensus 98.5 9.2E-08 2E-12 76.5 2.6 41 37-77 541-581 (1381)
483 PRK06002 fliI flagellum-specif 98.5 1.1E-07 2.4E-12 68.9 2.7 38 39-76 161-198 (450)
484 cd02026 PRK Phosphoribulokinas 98.4 3.8E-07 8.2E-12 62.5 5.1 28 45-72 1-28 (273)
485 TIGR02903 spore_lon_C ATP-depe 98.4 5E-07 1.1E-11 67.9 6.1 51 5-68 150-200 (615)
486 TIGR02788 VirB11 P-type DNA tr 98.4 1.9E-07 4E-12 64.9 3.6 38 35-72 136-173 (308)
487 PRK14957 DNA polymerase III su 98.4 4.2E-07 9.1E-12 67.4 5.6 55 3-69 10-64 (546)
488 PRK12323 DNA polymerase III su 98.4 4E-07 8.6E-12 68.6 5.4 55 3-69 10-64 (700)
489 cd00227 CPT Chloramphenicol (C 98.4 2.5E-07 5.5E-12 59.1 3.8 33 42-74 1-33 (175)
490 PF01078 Mg_chelatase: Magnesi 98.4 4E-07 8.7E-12 59.9 4.8 48 8-70 2-49 (206)
491 PRK14951 DNA polymerase III su 98.4 4.7E-07 1E-11 68.0 5.6 55 3-69 10-64 (618)
492 TIGR00382 clpX endopeptidase C 98.4 6.9E-07 1.5E-11 64.3 6.1 69 10-78 78-151 (413)
493 PRK00440 rfc replication facto 98.4 5.9E-07 1.3E-11 61.9 5.6 52 4-68 12-63 (319)
494 PRK00131 aroK shikimate kinase 98.4 4.4E-07 9.5E-12 57.3 4.5 33 41-73 2-34 (175)
495 PRK07003 DNA polymerase III su 98.4 5.2E-07 1.1E-11 69.0 5.4 55 3-69 10-64 (830)
496 PRK07994 DNA polymerase III su 98.4 4E-07 8.6E-12 68.7 4.8 55 3-69 10-64 (647)
497 PF07728 AAA_5: AAA domain (dy 98.4 4.3E-07 9.3E-12 55.8 4.0 33 45-77 1-33 (139)
498 cd03274 ABC_SMC4_euk Eukaryoti 98.4 2.1E-07 4.5E-12 61.5 2.7 23 44-66 26-48 (212)
499 PRK14950 DNA polymerase III su 98.4 7E-07 1.5E-11 66.8 5.7 54 3-68 10-63 (585)
500 PRK14955 DNA polymerase III su 98.4 7.8E-07 1.7E-11 63.7 5.7 54 4-69 11-64 (397)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.4e-24 Score=149.05 Aligned_cols=97 Identities=65% Similarity=1.020 Sum_probs=92.2
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+-++|++||||++|+++|++.+++|+++|++|..+++.|+++++|+||||+|||.|+|++|...+.+++.+.+++++.+|
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKY 225 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKY 225 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHccchhhh
Q psy16321 84 LGDGPKLVRVALVPEVR 100 (102)
Q Consensus 84 ~~~~~~~~~~~~~~q~~ 100 (102)
.++..+..|-.|..+..
T Consensus 226 iGEGaRlVRelF~lAre 242 (406)
T COG1222 226 IGEGARLVRELFELARE 242 (406)
T ss_pred hccchHHHHHHHHHHhh
Confidence 99999988888876653
No 2
>KOG0730|consensus
Probab=99.88 E-value=1.8e-22 Score=147.66 Aligned_cols=97 Identities=44% Similarity=0.795 Sum_probs=91.8
Q ss_pred cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh
Q psy16321 3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK 82 (102)
Q Consensus 3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~ 82 (102)
.+-++|+||||+++++.+|++.+.+|++|++.|..+++.++++++++||||||||+++|++|.+...+++.+.+.++.++
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk 507 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK 507 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHccchhh
Q psy16321 83 YLGDGPKLVRVALVPEV 99 (102)
Q Consensus 83 ~~~~~~~~~~~~~~~q~ 99 (102)
|++++|+..+-.|..++
T Consensus 508 ~vGeSEr~ir~iF~kAR 524 (693)
T KOG0730|consen 508 YVGESERAIREVFRKAR 524 (693)
T ss_pred hcCchHHHHHHHHHHHh
Confidence 99999998887776554
No 3
>KOG0733|consensus
Probab=99.84 E-value=5.6e-21 Score=139.49 Aligned_cols=96 Identities=39% Similarity=0.699 Sum_probs=91.3
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+-++|+|||+++++..+++.++.+|.++++.|+.+++..+.+++++||||||||.|+|++|.+....++.|.+.++.++|
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY 585 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY 585 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHccchhh
Q psy16321 84 LGDGPKLVRVALVPEV 99 (102)
Q Consensus 84 ~~~~~~~~~~~~~~q~ 99 (102)
++++|+..|..|..+.
T Consensus 586 VGESErAVR~vFqRAR 601 (802)
T KOG0733|consen 586 VGESERAVRQVFQRAR 601 (802)
T ss_pred hhhHHHHHHHHHHHhh
Confidence 9999999888776554
No 4
>KOG0736|consensus
Probab=99.82 E-value=2.4e-20 Score=138.64 Aligned_cols=97 Identities=41% Similarity=0.714 Sum_probs=89.6
Q ss_pred cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh
Q psy16321 3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK 82 (102)
Q Consensus 3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~ 82 (102)
.+-++|+||||+++++++|.+.+.+|++|+++|.+ ++.+..+++|+||||||||.++|++|.++...+..|.+.++...
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 35689999999999999999999999999999875 67778899999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHccchhhh
Q psy16321 83 YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 83 ~~~~~~~~~~~~~~~q~~ 100 (102)
|+|++|.+.|-+|..+..
T Consensus 745 YVGqSE~NVR~VFerAR~ 762 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARS 762 (953)
T ss_pred HhcchHHHHHHHHHHhhc
Confidence 999999999988876653
No 5
>KOG0728|consensus
Probab=99.81 E-value=1.4e-19 Score=121.65 Aligned_cols=96 Identities=57% Similarity=0.969 Sum_probs=90.2
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 84 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~ 84 (102)
--+|+-+||++.|+++|++.+++|.+||++|+++++.++++++|+||||+|||.|+++++....+.++.+++++++.++.
T Consensus 143 DStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~i 222 (404)
T KOG0728|consen 143 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYI 222 (404)
T ss_pred ccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHh
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHccchhhh
Q psy16321 85 GDGPKLVRVALVPEVR 100 (102)
Q Consensus 85 ~~~~~~~~~~~~~q~~ 100 (102)
++..+-.|-.|+.+..
T Consensus 223 gegsrmvrelfvmare 238 (404)
T KOG0728|consen 223 GEGSRMVRELFVMARE 238 (404)
T ss_pred hhhHHHHHHHHHHHHh
Confidence 9998888888877653
No 6
>KOG0727|consensus
Probab=99.81 E-value=1.2e-19 Score=122.05 Aligned_cols=97 Identities=60% Similarity=1.016 Sum_probs=90.1
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+-++|.|+||++-|+++|++.+++|+.|.+++..+++.++++++++||||||||.|++++|......++.+.+++++.++
T Consensus 150 pdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqky 229 (408)
T KOG0727|consen 150 PDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 229 (408)
T ss_pred CCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHccchhhh
Q psy16321 84 LGDGPKLVRVALVPEVR 100 (102)
Q Consensus 84 ~~~~~~~~~~~~~~q~~ 100 (102)
.++..+-.|-.|..+..
T Consensus 230 lgegprmvrdvfrlake 246 (408)
T KOG0727|consen 230 LGEGPRMVRDVFRLAKE 246 (408)
T ss_pred hccCcHHHHHHHHHHhc
Confidence 99998888877766543
No 7
>KOG0726|consensus
Probab=99.80 E-value=9.2e-20 Score=124.41 Aligned_cols=97 Identities=79% Similarity=1.141 Sum_probs=90.1
Q ss_pred cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh
Q psy16321 3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK 82 (102)
Q Consensus 3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~ 82 (102)
.+..+|.||||++.|+++|++.+++|+.||+.++.+++.+++++.++|+||+|||.|++++|..-..++..+.++++..+
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk 258 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHccchhh
Q psy16321 83 YLGDGPKLVRVALVPEV 99 (102)
Q Consensus 83 ~~~~~~~~~~~~~~~q~ 99 (102)
+.++..+..|..|.-++
T Consensus 259 ylGdGpklvRqlF~vA~ 275 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAE 275 (440)
T ss_pred HhccchHHHHHHHHHHH
Confidence 99999888887775544
No 8
>KOG0733|consensus
Probab=99.80 E-value=2.5e-19 Score=130.94 Aligned_cols=96 Identities=33% Similarity=0.621 Sum_probs=89.6
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+.++|.+|||++.+..++.+.+.+ .++|+.|..+++.|+++++|+||||||||.|+++|||.+..+++.|.+.++++..
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 356899999999999999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHccchhhh
Q psy16321 84 LGDGPKLVRVALVPEVR 100 (102)
Q Consensus 84 ~~~~~~~~~~~~~~q~~ 100 (102)
.+++|.+.|-.|..+..
T Consensus 264 SGESEkkiRelF~~A~~ 280 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKS 280 (802)
T ss_pred CcccHHHHHHHHHHHhc
Confidence 99999998888766543
No 9
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.77 E-value=2e-18 Score=122.81 Aligned_cols=92 Identities=64% Similarity=1.100 Sum_probs=81.8
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+..+|++|||++.++++|++.+.+++.+++.+..+++.++++++|+||||||||++++++++.....++.+.+.++...+
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~ 219 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKY 219 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999999888888887777777
Q ss_pred cCchHHHHHHcc
Q psy16321 84 LGDGPKLVRVAL 95 (102)
Q Consensus 84 ~~~~~~~~~~~~ 95 (102)
.++.+...+..|
T Consensus 220 ~ge~~~~lr~lf 231 (398)
T PTZ00454 220 LGEGPRMVRDVF 231 (398)
T ss_pred cchhHHHHHHHH
Confidence 777665544333
No 10
>KOG0738|consensus
Probab=99.77 E-value=1.4e-18 Score=121.78 Aligned_cols=94 Identities=40% Similarity=0.624 Sum_probs=88.0
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 84 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~ 84 (102)
-..|+||.|+.+.++.|++++.+|+..|++|..+. .|.++++++||||+|||.|+|+++.++..++++|....+.++|.
T Consensus 208 ~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwR 286 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWR 286 (491)
T ss_pred CcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhc
Confidence 36899999999999999999999999999999865 78899999999999999999999999999999999999999999
Q ss_pred CchHHHHHHccchhh
Q psy16321 85 GDGPKLVRVALVPEV 99 (102)
Q Consensus 85 ~~~~~~~~~~~~~q~ 99 (102)
+++|+..|+.|..+.
T Consensus 287 GeSEKlvRlLFemAR 301 (491)
T KOG0738|consen 287 GESEKLVRLLFEMAR 301 (491)
T ss_pred cchHHHHHHHHHHHH
Confidence 999999998887654
No 11
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.76 E-value=5.5e-18 Score=121.56 Aligned_cols=92 Identities=78% Similarity=1.208 Sum_probs=81.8
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+.++|++|+|++.++++|++.+.+++.+++.+.++++.++++++|+||||||||++++++++.....++.+...++...+
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~ 257 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKY 257 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhh
Confidence 34799999999999999999999999999999999999999999999999999999999999999888888888877777
Q ss_pred cCchHHHHHHcc
Q psy16321 84 LGDGPKLVRVAL 95 (102)
Q Consensus 84 ~~~~~~~~~~~~ 95 (102)
.++.+...+..|
T Consensus 258 ~Ge~~~~vr~lF 269 (438)
T PTZ00361 258 LGDGPKLVRELF 269 (438)
T ss_pred cchHHHHHHHHH
Confidence 777665544444
No 12
>KOG0652|consensus
Probab=99.74 E-value=5.5e-18 Score=114.55 Aligned_cols=96 Identities=53% Similarity=0.921 Sum_probs=88.2
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+...|.+|||++.|++++.+.+.+|..|++.|+++++.++++++++||||+|||.++|+.+..-+.++..+.+..++..+
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMf 245 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 245 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999888888888888888889
Q ss_pred cCchHHHHHHccchhh
Q psy16321 84 LGDGPKLVRVALVPEV 99 (102)
Q Consensus 84 ~~~~~~~~~~~~~~q~ 99 (102)
+++..+..|-+|..+.
T Consensus 246 IGdGAkLVRDAFaLAK 261 (424)
T KOG0652|consen 246 IGDGAKLVRDAFALAK 261 (424)
T ss_pred hcchHHHHHHHHHHhh
Confidence 9988888887776543
No 13
>KOG0737|consensus
Probab=99.72 E-value=1.1e-17 Score=116.38 Aligned_cols=94 Identities=40% Similarity=0.729 Sum_probs=85.4
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcC-CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~-i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
.++|++|||++.+++++++.+.+|+.+|++|..-. +.+.++++++||||||||.++++++......++.+..+.+.++|
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 36899999999999999999999999999996433 56889999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHccchh
Q psy16321 84 LGDGPKLVRVALVPE 98 (102)
Q Consensus 84 ~~~~~~~~~~~~~~q 98 (102)
.++.++..+..|.++
T Consensus 168 fgE~eKlv~AvFslA 182 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLA 182 (386)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999998888777654
No 14
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.72 E-value=4e-17 Score=115.92 Aligned_cols=91 Identities=63% Similarity=1.079 Sum_probs=81.1
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 84 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~ 84 (102)
-.+|++|+|+++++++|++.+.+++.+++.+..+++.++.+++|+||||||||+++++++......++.+...++...+.
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~ 206 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFI 206 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhc
Confidence 46899999999999999999999999999999999999999999999999999999999999988888888888877777
Q ss_pred CchHHHHHHcc
Q psy16321 85 GDGPKLVRVAL 95 (102)
Q Consensus 85 ~~~~~~~~~~~ 95 (102)
++.+...+..|
T Consensus 207 g~~~~~i~~~f 217 (389)
T PRK03992 207 GEGARLVRELF 217 (389)
T ss_pred cchHHHHHHHH
Confidence 76665554433
No 15
>KOG0729|consensus
Probab=99.72 E-value=3.5e-17 Score=110.96 Aligned_cols=95 Identities=54% Similarity=0.926 Sum_probs=87.7
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+-++|.++||-.+|++.|++.++.|+.||+.|.++++.++++++++||||+|||.++|++|.--+..++.+.+++++.++
T Consensus 172 pdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqky 251 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY 251 (435)
T ss_pred CCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred cCchHHHHHHccchh
Q psy16321 84 LGDGPKLVRVALVPE 98 (102)
Q Consensus 84 ~~~~~~~~~~~~~~q 98 (102)
+++..+-.|-.|..+
T Consensus 252 vgegarmvrelf~ma 266 (435)
T KOG0729|consen 252 VGEGARMVRELFEMA 266 (435)
T ss_pred hhhhHHHHHHHHHHh
Confidence 998887766666544
No 16
>KOG0739|consensus
Probab=99.70 E-value=4.6e-17 Score=111.54 Aligned_cols=95 Identities=37% Similarity=0.647 Sum_probs=86.1
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+-+.|+++.||+..++.|++.+.+|.+.|++|..-. .|.+.++|+||||+|||-|++++|.+.+.+++.|..++++++|
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR-~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKW 206 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKR-KPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 206 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeecccchhhhcCCC-CcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHH
Confidence 457899999999999999999999999999988644 5688999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHccchhh
Q psy16321 84 LGDGPKLVRVALVPEV 99 (102)
Q Consensus 84 ~~~~~~~~~~~~~~q~ 99 (102)
.+++++..+-.|..+.
T Consensus 207 mGESEkLVknLFemAR 222 (439)
T KOG0739|consen 207 MGESEKLVKNLFEMAR 222 (439)
T ss_pred hccHHHHHHHHHHHHH
Confidence 9999988876665544
No 17
>KOG0731|consensus
Probab=99.70 E-value=6.4e-17 Score=121.11 Aligned_cols=93 Identities=43% Similarity=0.698 Sum_probs=84.3
Q ss_pred ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC
Q psy16321 6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG 85 (102)
Q Consensus 6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~ 85 (102)
++|+|+.|.++.+++|.|.+.+ +++|+.|.++++..+++++|+||||||||.|||++||+.+.+++.+++++++-.+.+
T Consensus 308 V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g 386 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVG 386 (774)
T ss_pred CccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcc
Confidence 6899999999999999998876 899999999999999999999999999999999999999999999999999888887
Q ss_pred chHHHHHHccchhh
Q psy16321 86 DGPKLVRVALVPEV 99 (102)
Q Consensus 86 ~~~~~~~~~~~~q~ 99 (102)
....+.+-.|..+.
T Consensus 387 ~~asrvr~lf~~ar 400 (774)
T KOG0731|consen 387 VGASRVRDLFPLAR 400 (774)
T ss_pred cchHHHHHHHHHhh
Confidence 77777666655444
No 18
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.70 E-value=8e-17 Score=117.26 Aligned_cols=92 Identities=50% Similarity=0.920 Sum_probs=77.3
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc----------EEE
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT----------FLR 73 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~----------~~~ 73 (102)
+-++|++|+|+++++++|++.+.+++.+++.+..+++.++.+++|+||||||||+++++++..+... +..
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 4578999999999999999999999999999999999999999999999999999999999976432 445
Q ss_pred EccchhhhhccCchHHHHHHcc
Q psy16321 74 VVGSELIQKYLGDGPKLVRVAL 95 (102)
Q Consensus 74 i~~~~~~~~~~~~~~~~~~~~~ 95 (102)
+...++..++.++.+...+..|
T Consensus 257 v~~~eLl~kyvGete~~ir~iF 278 (512)
T TIGR03689 257 IKGPELLNKYVGETERQIRLIF 278 (512)
T ss_pred ccchhhcccccchHHHHHHHHH
Confidence 5556666677777766555443
No 19
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.69 E-value=1.3e-16 Score=120.55 Aligned_cols=94 Identities=49% Similarity=0.868 Sum_probs=86.3
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+..+|++++|++++++.|++.+.+++.+++.+..+++.++.+++|+||||||||+++++++..+..+++.+...++..++
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW 527 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred cCchHHHHHHccch
Q psy16321 84 LGDGPKLVRVALVP 97 (102)
Q Consensus 84 ~~~~~~~~~~~~~~ 97 (102)
.++++...+..|..
T Consensus 528 vGese~~i~~~f~~ 541 (733)
T TIGR01243 528 VGESEKAIREIFRK 541 (733)
T ss_pred cCcHHHHHHHHHHH
Confidence 99888776665544
No 20
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.4e-16 Score=115.81 Aligned_cols=96 Identities=46% Similarity=0.816 Sum_probs=89.6
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+.++|++++|+++.++.+++.+.+++.+++.+...++.+..+++|+||||||||+|+++++...+.+++.+...++.+++
T Consensus 237 ~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~ 316 (494)
T COG0464 237 EDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKW 316 (494)
T ss_pred CCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccc
Confidence 45789999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHccchhh
Q psy16321 84 LGDGPKLVRVALVPEV 99 (102)
Q Consensus 84 ~~~~~~~~~~~~~~q~ 99 (102)
.++++++.+..|..+.
T Consensus 317 vGesek~ir~~F~~A~ 332 (494)
T COG0464 317 VGESEKNIRELFEKAR 332 (494)
T ss_pred cchHHHHHHHHHHHHH
Confidence 9999999887776654
No 21
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.68 E-value=2.2e-16 Score=111.22 Aligned_cols=87 Identities=66% Similarity=1.135 Sum_probs=76.5
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+..+|++|+|+++++++|++.+.+++.+++.+..+++.++.+++|+||||||||+++++++..+...+..+...++...+
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~ 196 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKY 196 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHh
Confidence 34689999999999999999999999999999999999999999999999999999999999998888888776666666
Q ss_pred cCchHHH
Q psy16321 84 LGDGPKL 90 (102)
Q Consensus 84 ~~~~~~~ 90 (102)
.+.....
T Consensus 197 ~g~~~~~ 203 (364)
T TIGR01242 197 IGEGARL 203 (364)
T ss_pred hhHHHHH
Confidence 5554443
No 22
>KOG0735|consensus
Probab=99.68 E-value=1.5e-16 Score=118.11 Aligned_cols=94 Identities=33% Similarity=0.578 Sum_probs=89.0
Q ss_pred ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC
Q psy16321 6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG 85 (102)
Q Consensus 6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~ 85 (102)
-.|++|||+.++++.+++.+++|-+++.+|.+..+....+++|+||||||||.|+.+++...+..++.+.+.++.++++|
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHccchhh
Q psy16321 86 DGPKLVRVALVPEV 99 (102)
Q Consensus 86 ~~~~~~~~~~~~q~ 99 (102)
.+|...|..|..+.
T Consensus 744 aSEq~vR~lF~rA~ 757 (952)
T KOG0735|consen 744 ASEQNVRDLFERAQ 757 (952)
T ss_pred ccHHHHHHHHHHhh
Confidence 99999888876654
No 23
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.67 E-value=3.9e-17 Score=110.01 Aligned_cols=64 Identities=22% Similarity=0.194 Sum_probs=55.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|++++|+||||||||||+|+|+|+++|..|.|..++.........+..++++|++|.+
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~ 85 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSP 85 (258)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCC
Confidence 4678999999999999999999999999999998887776655445567778888999999985
No 24
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.65 E-value=7.1e-16 Score=116.65 Aligned_cols=91 Identities=49% Similarity=0.894 Sum_probs=80.2
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 84 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~ 84 (102)
-.+|++|+|++.+++.|++.+.+++.+++.+.++++.++++++|+||||||||+++++|++.+....+.+++.++...+.
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~ 253 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYY 253 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccc
Confidence 46899999999999999999999999999999999999999999999999999999999999988888888877777776
Q ss_pred CchHHHHHHcc
Q psy16321 85 GDGPKLVRVAL 95 (102)
Q Consensus 85 ~~~~~~~~~~~ 95 (102)
+..+.+.+..|
T Consensus 254 g~~~~~l~~lf 264 (733)
T TIGR01243 254 GESEERLREIF 264 (733)
T ss_pred cHHHHHHHHHH
Confidence 66655444333
No 25
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.63 E-value=1.2e-16 Score=111.66 Aligned_cols=62 Identities=23% Similarity=0.220 Sum_probs=51.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|.|||||||||++|+|||+..|+.|.|..++... .+....++.+++|||++
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i--~~lpp~kR~ig~VFQ~Y 86 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDI--TDVPPEKRPIGMVFQSY 86 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC--CCCChhhcccceeecCc
Confidence 577899999999999999999999999999999988776654422 23556678899999985
No 26
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.63 E-value=1.9e-16 Score=103.91 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=52.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch--hhhhccCchHHHHHHccchhhhc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE--LIQKYLGDGPKLVRVALVPEVRN 101 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~q~~~ 101 (102)
++++.+|+.++|+||||||||||+|||.++..++.|.|...+ +..+. .....|+++++|||++|
T Consensus 22 ~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~-~~~~~R~~vGmVFQ~fn 87 (240)
T COG1126 22 SLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK-DILKLRRKVGMVFQQFN 87 (240)
T ss_pred ceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh-hHHHHHHhcCeeccccc
Confidence 467899999999999999999999999999999988776554 22222 44566778999999875
No 27
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.61 E-value=2e-16 Score=110.08 Aligned_cols=63 Identities=22% Similarity=0.233 Sum_probs=52.1
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
-++.+..|+++.|+|||||||||++|+|||+..++.|+|...+.... ......+.+++|||++
T Consensus 22 i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt--~l~P~~R~iamVFQ~y 84 (338)
T COG3839 22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVT--DLPPEKRGIAMVFQNY 84 (338)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC--CCChhHCCEEEEeCCc
Confidence 35778999999999999999999999999999999888876654222 2345667899999985
No 28
>KOG0651|consensus
Probab=99.60 E-value=2.4e-15 Score=103.28 Aligned_cols=93 Identities=51% Similarity=0.897 Sum_probs=86.3
Q ss_pred ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC
Q psy16321 6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG 85 (102)
Q Consensus 6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~ 85 (102)
.+|+.++|+..|+-++++.+++++..++++.++++.++.+++|+||+|+|||.++++++.-+...++.+..+.+.+++.+
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiG 208 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIG 208 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHccchh
Q psy16321 86 DGPKLVRVALVPE 98 (102)
Q Consensus 86 ~~~~~~~~~~~~q 98 (102)
++.+..|..|-.+
T Consensus 209 EsaRlIRemf~yA 221 (388)
T KOG0651|consen 209 ESARLIRDMFRYA 221 (388)
T ss_pred cHHHHHHHHHHHH
Confidence 9887777655443
No 29
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.59 E-value=6.8e-16 Score=102.29 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=50.2
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC----chHHHHHHccchhhhc
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG----DGPKLVRVALVPEVRN 101 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~q~~~ 101 (102)
.++.+++|+.++|+||||||||||+++|+++..|+.+.+........... ..-++.+++|+||+.+
T Consensus 24 v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n 93 (226)
T COG1136 24 VNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN 93 (226)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCC
Confidence 46789999999999999999999999999999999777554432111122 1234457999999865
No 30
>KOG0732|consensus
Probab=99.59 E-value=2.3e-15 Score=115.54 Aligned_cols=96 Identities=36% Similarity=0.694 Sum_probs=85.3
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc-----EEEEccch
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT-----FLRVVGSE 78 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~-----~~~i~~~~ 78 (102)
+.++|+++|||+.++.++++.+.+|+.++++|.++.+.++++++++||||+|||..+++++..+... ++.-.+.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 3679999999999999999999999999999999999999999999999999999999999987543 34445678
Q ss_pred hhhhccCchHHHHHHccchhh
Q psy16321 79 LIQKYLGDGPKLVRVALVPEV 99 (102)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~q~ 99 (102)
..++|+++.++..+..|..+.
T Consensus 340 ~lskwvgEaERqlrllFeeA~ 360 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQ 360 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHh
Confidence 889999999998888776654
No 31
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=5.7e-16 Score=106.03 Aligned_cols=64 Identities=22% Similarity=0.232 Sum_probs=51.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhh-hccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ-KYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~q~~ 100 (102)
++++..|+.++|.|||||||||++|+|||+..|+.|.|..++... +......+.++++|+||++
T Consensus 22 ~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~Y 86 (345)
T COG1118 22 SLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHY 86 (345)
T ss_pred eeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEech
Confidence 567889999999999999999999999999999988887665421 1112345567899999986
No 32
>KOG0734|consensus
Probab=99.58 E-value=6.3e-15 Score=107.07 Aligned_cols=94 Identities=39% Similarity=0.629 Sum_probs=84.4
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 84 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~ 84 (102)
-++|+|+-|.++.++++++.+++ ++.|+-|.+++-.-+++++|+||||+|||.|+|++||+...+++...++++.-.++
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 46899999999999999999887 88999999999888899999999999999999999999999999999998877788
Q ss_pred CchHHHHHHccchhh
Q psy16321 85 GDGPKLVRVALVPEV 99 (102)
Q Consensus 85 ~~~~~~~~~~~~~q~ 99 (102)
+...+|.|-.|..+.
T Consensus 379 GvGArRVRdLF~aAk 393 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAK 393 (752)
T ss_pred cccHHHHHHHHHHHH
Confidence 888888877665544
No 33
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.57 E-value=1.2e-14 Score=105.99 Aligned_cols=90 Identities=40% Similarity=0.710 Sum_probs=76.7
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 84 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~ 84 (102)
..+|++++|++++++++++.+.+ +.+++.+.+++...+++++|+||||||||+++++|++....+++.++..++...+.
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~ 129 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV 129 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHh
Confidence 56899999999999999998876 78889999988888899999999999999999999999988888888777766666
Q ss_pred CchHHHHHHcc
Q psy16321 85 GDGPKLVRVAL 95 (102)
Q Consensus 85 ~~~~~~~~~~~ 95 (102)
+..+.+.+..|
T Consensus 130 g~~~~~l~~~f 140 (495)
T TIGR01241 130 GVGASRVRDLF 140 (495)
T ss_pred cccHHHHHHHH
Confidence 66555444433
No 34
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.56 E-value=5.6e-15 Score=97.06 Aligned_cols=75 Identities=21% Similarity=0.232 Sum_probs=57.0
Q ss_pred hhcCChHHHH--hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc-----EEEEc--cchhhhhccCchHHHHHHccch
Q psy16321 27 LPLTHPEYYE--EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT-----FLRVV--GSELIQKYLGDGPKLVRVALVP 97 (102)
Q Consensus 27 ~~~~~~~~~~--~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~-----~~~i~--~~~~~~~~~~~~~~~~~~~~~~ 97 (102)
+.+...+..+ ++.++++++.+|+|||||||||++|++.++.... .|+|. +.++........+.|+++++||
T Consensus 15 ~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVF 94 (253)
T COG1117 15 LYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVF 94 (253)
T ss_pred EEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeec
Confidence 3344444444 5678999999999999999999999999976543 34444 4566656666778899999999
Q ss_pred hhhc
Q psy16321 98 EVRN 101 (102)
Q Consensus 98 q~~~ 101 (102)
|.||
T Consensus 95 QkPn 98 (253)
T COG1117 95 QKPN 98 (253)
T ss_pred cCCC
Confidence 9986
No 35
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.55 E-value=1.6e-15 Score=101.21 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=46.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+|+|||+..|+.|.|...+... ......++|+||++
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v-----~~p~~~~~~vFQ~~ 81 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV-----TGPGPDIGYVFQED 81 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc-----CCCCCCEEEEeccC
Confidence 567899999999999999999999999999999988876543211 11123568888875
No 36
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=3.6e-15 Score=98.95 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=52.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC---chHHHHHHccchhhhc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG---DGPKLVRVALVPEVRN 101 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~q~~~ 101 (102)
++.+++|+.++|+||||+|||||+|+|+|+.+++.+++...+....... ....+++++|+||.+|
T Consensus 24 nl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n 91 (258)
T COG3638 24 NLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN 91 (258)
T ss_pred eEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCC
Confidence 5789999999999999999999999999999999888776653222222 3345678999999875
No 37
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.54 E-value=3e-15 Score=99.56 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=52.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh-hhhccCchHHHHHHccchhhhcC
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL-IQKYLGDGPKLVRVALVPEVRNG 102 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~q~~~~ 102 (102)
++++.+|+.++|+|+||||||||+|+|+|+.++..|+|...+. ...........+.+.+|||++.+
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~ 93 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYS 93 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCcc
Confidence 5678999999999999999999999999999999888876652 22222233455668899999753
No 38
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.53 E-value=6.3e-14 Score=102.01 Aligned_cols=89 Identities=27% Similarity=0.402 Sum_probs=74.1
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 84 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~ 84 (102)
..+|++|||++.+++.+++.... ......++++..+++++|+||||||||+++++||+..+.+.+.++...+...+.
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 46899999999999999875532 223446678889999999999999999999999999999999998888888888
Q ss_pred CchHHHHHHccc
Q psy16321 85 GDGPKLVRVALV 96 (102)
Q Consensus 85 ~~~~~~~~~~~~ 96 (102)
++++.+.+..|.
T Consensus 301 Gese~~l~~~f~ 312 (489)
T CHL00195 301 GESESRMRQMIR 312 (489)
T ss_pred ChHHHHHHHHHH
Confidence 888877665554
No 39
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.53 E-value=6.7e-15 Score=98.88 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=55.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEV 99 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~ 99 (102)
+++++.|+.++++|||||||||++|+|.++..|+.|.|..++.........+.|++++|+-|.
T Consensus 21 ~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQq 83 (309)
T COG1125 21 NLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQ 83 (309)
T ss_pred eEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhh
Confidence 577899999999999999999999999999999988887665555566677888999999986
No 40
>KOG0740|consensus
Probab=99.52 E-value=3e-14 Score=101.51 Aligned_cols=91 Identities=41% Similarity=0.723 Sum_probs=84.4
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 84 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~ 84 (102)
-+.|++++|+++.++.+.+.+.+|...++.|..+. .+.+.++++||+|+|||.|+++||.+....++.+..+.+.++|.
T Consensus 149 ~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~ 227 (428)
T KOG0740|consen 149 NVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYV 227 (428)
T ss_pred cccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhcc
Confidence 36899999999999999999999999999999987 56779999999999999999999999999999999999999999
Q ss_pred CchHHHHHHccc
Q psy16321 85 GDGPKLVRVALV 96 (102)
Q Consensus 85 ~~~~~~~~~~~~ 96 (102)
|+.+...|..|-
T Consensus 228 Ge~eK~vralf~ 239 (428)
T KOG0740|consen 228 GESEKLVRALFK 239 (428)
T ss_pred ChHHHHHHHHHH
Confidence 999888777663
No 41
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.51 E-value=5e-15 Score=99.57 Aligned_cols=61 Identities=21% Similarity=0.246 Sum_probs=48.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|++++|+||||+|||||+|+|.|++.|..|++....... .....+.+++||||..
T Consensus 24 ~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~---~~~~~~~~IgYVPQ~~ 84 (254)
T COG1121 24 SLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPV---RKRRKRLRIGYVPQKS 84 (254)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccc---cccccCCeEEEcCccc
Confidence 467899999999999999999999999999999988886543311 1112245799999964
No 42
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.51 E-value=9.8e-15 Score=95.66 Aligned_cols=64 Identities=23% Similarity=0.186 Sum_probs=48.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.++..|.+..++...........+.+++|++|++
T Consensus 21 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 84 (211)
T cd03225 21 SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNP 84 (211)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecCh
Confidence 4678899999999999999999999999999988887765432111112223445788999874
No 43
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.50 E-value=2.1e-14 Score=91.65 Aligned_cols=64 Identities=20% Similarity=0.189 Sum_probs=54.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|.||||||||||+|++|.+..|+.|.+.+..-.....+..+.+.+++|+.|.+
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~p 86 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTP 86 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCc
Confidence 5778999999999999999999999999999999888766544334456667788999999976
No 44
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.50 E-value=1.7e-14 Score=94.90 Aligned_cols=64 Identities=17% Similarity=0.090 Sum_probs=48.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|++++..|.+...+........ ...+..++|++|++
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~ 89 (216)
T TIGR00960 23 NFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDH 89 (216)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCc
Confidence 56789999999999999999999999999999988877655321111111 12345789999875
No 45
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=1.4e-14 Score=96.35 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=47.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+++|..|.+...+........ ...+..++|++|++
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~ 86 (235)
T cd03261 20 DLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSG 86 (235)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCc
Confidence 46789999999999999999999999999999988877654321111111 22345688999874
No 46
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.48 E-value=1.8e-14 Score=92.12 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=48.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||+|||||+++|+|+.++..+.+..++...........+.+++|++|++
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 85 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDD 85 (173)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCC
Confidence 4678899999999999999999999999999988777765432212222233455789999875
No 47
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.48 E-value=2e-14 Score=98.86 Aligned_cols=64 Identities=23% Similarity=0.227 Sum_probs=51.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhhc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVRN 101 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~~ 101 (102)
++.+.+|+.++|+||||||||||+|+|+|+..|+.|++...+..... ...+.+.+++|++|++.
T Consensus 25 s~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~-~~~~~~~~igy~~~~~~ 88 (293)
T COG1131 25 SFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK-EPAKVRRRIGYVPQEPS 88 (293)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCcc-CHHHHHhheEEEccCCC
Confidence 56789999999999999999999999999999998887665432111 13456678999999863
No 48
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.48 E-value=1.8e-14 Score=94.83 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=47.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch----HHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG----PKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++++..|.+...+......... ..+.+++|++|++
T Consensus 24 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (218)
T cd03255 24 SLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSF 91 (218)
T ss_pred EEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeecc
Confidence 467899999999999999999999999999999888876543221111111 1234688988874
No 49
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.48 E-value=1.9e-14 Score=95.38 Aligned_cols=64 Identities=20% Similarity=0.158 Sum_probs=48.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.++..|++...+...........+.+++|++|++
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 90 (225)
T PRK10247 27 SFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTP 90 (225)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEeccc
Confidence 5678999999999999999999999999999888887765432111112223445788999874
No 50
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.48 E-value=2.1e-14 Score=92.87 Aligned_cols=65 Identities=18% Similarity=0.083 Sum_probs=52.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh---ccCchHHHHHHccchhhhc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK---YLGDGPKLVRVALVPEVRN 101 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~q~~~ 101 (102)
++.+++|+++.++||||+|||||+|.|.+...|+.|.+...+.... .....-.++++++|||+..
T Consensus 22 s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~r 89 (223)
T COG2884 22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFR 89 (223)
T ss_pred eEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeecc
Confidence 4678999999999999999999999999999999888776544222 2223456778999999863
No 51
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.48 E-value=2.2e-14 Score=94.54 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=49.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+..+..|.+...+.........+.+++++|++|++
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 87 (221)
T cd03244 24 SFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDP 87 (221)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCC
Confidence 5778999999999999999999999999999988887765443222223334456789999875
No 52
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.2e-13 Score=101.91 Aligned_cols=95 Identities=38% Similarity=0.672 Sum_probs=86.3
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 84 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~ 84 (102)
-++|+|+.|.++.++++.+.+.+ ++.|..|..++..-+++++++||||+|||.|+|+++|+.+.+++.+++++.+-.++
T Consensus 146 ~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfV 224 (596)
T COG0465 146 KVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV 224 (596)
T ss_pred CcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhc
Confidence 46899999999999999999876 78888999999888999999999999999999999999999999999999998899
Q ss_pred CchHHHHHHccchhhh
Q psy16321 85 GDGPKLVRVALVPEVR 100 (102)
Q Consensus 85 ~~~~~~~~~~~~~q~~ 100 (102)
+....+.|.-|..+..
T Consensus 225 GvGAsRVRdLF~qAkk 240 (596)
T COG0465 225 GVGASRVRDLFEQAKK 240 (596)
T ss_pred CCCcHHHHHHHHHhhc
Confidence 9888888877766553
No 53
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.47 E-value=2.7e-14 Score=94.55 Aligned_cols=64 Identities=20% Similarity=0.109 Sum_probs=47.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhh-----CccEEEEccchhhhhccC--chHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT-----SATFLRVVGSELIQKYLG--DGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~-----~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+. .+..|++...+....... ....+.+++|++|++
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 20 SLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 4678899999999999999999999999998 787777765432111111 223345688999875
No 54
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.47 E-value=2.2e-14 Score=97.66 Aligned_cols=64 Identities=20% Similarity=0.088 Sum_probs=49.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+++|..|.+...+.........+.+.+++|++|++
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 88 (274)
T PRK13647 25 SLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDP 88 (274)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecCh
Confidence 4678999999999999999999999999999998887765543222122233445789999975
No 55
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.47 E-value=2.3e-14 Score=94.41 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=47.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.++..|++...+...... ..+.+.+++|++|++
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~ 84 (220)
T cd03263 22 SLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGYCPQFD 84 (220)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEEecCcC
Confidence 467899999999999999999999999999999888776543211111 123445688999874
No 56
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.47 E-value=2.7e-14 Score=92.32 Aligned_cols=64 Identities=20% Similarity=0.130 Sum_probs=48.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc--CchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL--GDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+++|+|+.++..|.+...+...... .....+..++|++|++
T Consensus 12 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 77 (190)
T TIGR01166 12 NFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDP 77 (190)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecCh
Confidence 577899999999999999999999999999999888776543211111 1123345689999875
No 57
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=2.3e-14 Score=94.96 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=48.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.++..|.+...+...........+.+++|++|++
T Consensus 23 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 86 (229)
T cd03254 23 NFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDT 86 (229)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCc
Confidence 4678899999999999999999999999999988777765432212222233455688998874
No 58
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.47 E-value=2.2e-14 Score=93.76 Aligned_cols=61 Identities=20% Similarity=0.153 Sum_probs=47.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.+|..|.+...+.... ....+.+++|++|++
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~---~~~~~~~i~~~~q~~ 80 (205)
T cd03226 20 SLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIK---AKERRKSIGYVMQDV 80 (205)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhh---hHHhhcceEEEecCh
Confidence 4678899999999999999999999999999998888765432111 123345688999874
No 59
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.47 E-value=3e-14 Score=93.56 Aligned_cols=59 Identities=25% Similarity=0.314 Sum_probs=46.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.+|..|++...+.... ..+.+++|++|++
T Consensus 19 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~q~~ 77 (213)
T cd03235 19 SFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVPQRR 77 (213)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEecccc
Confidence 5678999999999999999999999999999988887765432111 2345688988875
No 60
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.47 E-value=2.4e-14 Score=93.88 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=47.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK--YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++++..|++...+.... .......+..++|++|++
T Consensus 20 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 85 (213)
T cd03262 20 DLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQF 85 (213)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEeccc
Confidence 5678899999999999999999999999999988887765432111 011123345688999875
No 61
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=2.5e-14 Score=95.66 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=48.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||+|||||+++|+|+.++..|.+..++...........+.+++|++|++
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 84 (242)
T cd03295 21 NLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQI 84 (242)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCc
Confidence 5678999999999999999999999999999988887765432111112223345688999874
No 62
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=2.5e-14 Score=95.70 Aligned_cols=64 Identities=16% Similarity=0.114 Sum_probs=48.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.+|..|.+...+...........+..++|++|++
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~ 86 (241)
T PRK14250 23 SVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQP 86 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCc
Confidence 5678899999999999999999999999999988887765432111112223445688999874
No 63
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=3.2e-14 Score=94.80 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=47.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC---chHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG---DGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++++..|.+...+....... ....+..++|++|++
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~ 87 (241)
T cd03256 21 SLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQF 87 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccC
Confidence 5778999999999999999999999999999888777755432111111 122345688999874
No 64
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.47 E-value=2.5e-14 Score=97.62 Aligned_cols=64 Identities=11% Similarity=0.061 Sum_probs=49.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|++.|..|.+...+...........+.+++|++|++
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 90 (279)
T PRK13650 27 SFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNP 90 (279)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcCh
Confidence 5678999999999999999999999999999998887765543222222234456789999975
No 65
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=2.7e-14 Score=91.10 Aligned_cols=64 Identities=25% Similarity=0.292 Sum_probs=48.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||+|||||+++|+|+.++..|++...+...........+.+++|++|++
T Consensus 22 ~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~ 85 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDP 85 (171)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCc
Confidence 4678999999999999999999999999999988777765432211122223445688888874
No 66
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=3.4e-14 Score=93.77 Aligned_cols=63 Identities=19% Similarity=0.095 Sum_probs=47.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+++|..|.+...+..... .....+.+++|++|++
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~ 82 (220)
T cd03265 20 SFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGIVFQDL 82 (220)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEEEecCCc
Confidence 46788999999999999999999999999999988877654321111 1123345688999875
No 67
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=3e-14 Score=94.67 Aligned_cols=64 Identities=19% Similarity=0.192 Sum_probs=48.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.+|..|.+...+...........+..++|++|++
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 85 (234)
T cd03251 22 SLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDV 85 (234)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCC
Confidence 4678899999999999999999999999999988887765432111122223455688999875
No 68
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.46 E-value=2.8e-14 Score=95.04 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=48.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|++++..|++...+...........+.+++|++|++
T Consensus 23 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 86 (238)
T cd03249 23 SLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEP 86 (238)
T ss_pred EEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCch
Confidence 5778999999999999999999999999999988777765442211122233345688998874
No 69
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.46 E-value=3e-14 Score=93.21 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=49.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+..+..|.+...+.........+.+..++|++|++
T Consensus 28 sl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 91 (207)
T cd03369 28 SFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDP 91 (207)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCC
Confidence 4678899999999999999999999999999988887765543222222233455789999975
No 70
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=3.4e-14 Score=96.45 Aligned_cols=64 Identities=13% Similarity=0.039 Sum_probs=48.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|++++..|.+...+...........+.+++|++|++
T Consensus 29 sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 92 (269)
T PRK13648 29 SFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNP 92 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeCh
Confidence 4678999999999999999999999999999988887765543211122223455688999875
No 71
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=2.7e-14 Score=91.28 Aligned_cols=63 Identities=21% Similarity=0.133 Sum_probs=47.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++++..+.+..++....... .+.+.+++|++|++
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~ 82 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYLPEEP 82 (173)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEEEecCC
Confidence 5678999999999999999999999999999888887765432111111 23345688999875
No 72
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=2.4e-14 Score=100.76 Aligned_cols=62 Identities=21% Similarity=0.230 Sum_probs=49.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+..++.|.+..++.... .....++.++|++|++
T Consensus 24 sl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~--~~~~~~r~ig~v~Q~~ 85 (356)
T PRK11650 24 DLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVN--ELEPADRDIAMVFQNY 85 (356)
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECC--CCCHHHCCEEEEeCCc
Confidence 5778999999999999999999999999999999888765543211 1223446799999985
No 73
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.46 E-value=4.1e-14 Score=97.55 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=48.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|++++|+||||||||||+++|+|+++|+.|.+...+..... .....+.+++|++|++
T Consensus 13 s~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~ 75 (302)
T TIGR01188 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYA 75 (302)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCC
Confidence 57789999999999999999999999999999998877654321111 1123455689999875
No 74
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=3.8e-14 Score=94.19 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=47.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch---HHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG---PKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++++..|.+...+......... ..+..++|++|++
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (233)
T cd03258 25 SLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHF 91 (233)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCc
Confidence 577899999999999999999999999999999877776543211111111 2245688999875
No 75
>CHL00176 ftsH cell division protein; Validated
Probab=99.46 E-value=3e-13 Score=101.09 Aligned_cols=84 Identities=39% Similarity=0.724 Sum_probs=71.0
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 84 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~ 84 (102)
-.+|++++|+++.++++++.+.+ ++.++.+..++...+++++|+||||||||++++++++....+++.+.+.++...+.
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~ 257 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFV 257 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhh
Confidence 35899999999999999998766 77888888888888899999999999999999999999988888887776655544
Q ss_pred CchHH
Q psy16321 85 GDGPK 89 (102)
Q Consensus 85 ~~~~~ 89 (102)
+....
T Consensus 258 g~~~~ 262 (638)
T CHL00176 258 GVGAA 262 (638)
T ss_pred hhhHH
Confidence 44333
No 76
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.46 E-value=2.7e-14 Score=94.15 Aligned_cols=64 Identities=22% Similarity=0.147 Sum_probs=47.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.++..|.+...+.......... .+.+++|++|++
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 84 (222)
T cd03224 20 SLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGR 84 (222)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEecccc
Confidence 4678899999999999999999999999999988877765432111111112 234588999875
No 77
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.46 E-value=3.1e-14 Score=94.41 Aligned_cols=64 Identities=19% Similarity=0.126 Sum_probs=48.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+++|..|++...+.......... .+.+++|++|++
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 84 (230)
T TIGR03410 20 SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGR 84 (230)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCC
Confidence 5678899999999999999999999999999998887765543211111112 234688999875
No 78
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.46 E-value=5.1e-14 Score=94.02 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=47.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.++..|.+...+........ ...+.+++|++|++
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~ 88 (243)
T TIGR02315 22 NLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHY 88 (243)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCC
Confidence 56789999999999999999999999999999887777654321111111 12345689999874
No 79
>PRK10908 cell division protein FtsE; Provisional
Probab=99.46 E-value=5.3e-14 Score=92.94 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=47.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|++++..|++...+........ ...+..++|++|++
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~ 88 (222)
T PRK10908 22 TFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDH 88 (222)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCc
Confidence 46789999999999999999999999999999988887654321111111 12345688999875
No 80
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.45 E-value=3.1e-14 Score=94.14 Aligned_cols=64 Identities=20% Similarity=0.160 Sum_probs=47.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|++.|..|++...+........ ...+..++|++|++
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDP 91 (228)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCc
Confidence 56789999999999999999999999999999888877654321111111 22345688998875
No 81
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.45 E-value=3.4e-14 Score=94.60 Aligned_cols=64 Identities=22% Similarity=0.155 Sum_probs=48.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++++..|++...+...........+.+++|++|++
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 85 (237)
T cd03252 22 SLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQEN 85 (237)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCc
Confidence 5678999999999999999999999999999988777765432211122223445688999874
No 82
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=4.8e-14 Score=92.46 Aligned_cols=62 Identities=21% Similarity=0.163 Sum_probs=47.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+| .++|+||||||||||+++|+|++++..|++...+....... .+.+.+++|++|++
T Consensus 20 s~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~ 81 (211)
T cd03264 20 SLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYLPQEF 81 (211)
T ss_pred eEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEecCCC
Confidence 4678888 99999999999999999999999998888765442211111 33456788999875
No 83
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=4e-14 Score=94.18 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=48.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.++..|.+...+...........+..++|++|++
T Consensus 21 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~ 84 (236)
T cd03253 21 SFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDT 84 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCC
Confidence 5678899999999999999999999999999988887765432212222333445688998874
No 84
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.45 E-value=3.5e-14 Score=103.93 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=53.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++++|+.++|+||||||||||+++|+|+++|..|++..++...... ..+.+..++|++|++
T Consensus 355 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~ 417 (529)
T TIGR02868 355 SLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDA 417 (529)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCc
Confidence 366889999999999999999999999999999988887665544445 667778899999986
No 85
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.45 E-value=2.9e-14 Score=94.84 Aligned_cols=64 Identities=19% Similarity=0.122 Sum_probs=46.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++++..|.+...+.......... .+.+++|++|++
T Consensus 20 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 84 (236)
T cd03219 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIP 84 (236)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEeccc
Confidence 5778999999999999999999999999999988887765432111111112 123478888874
No 86
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=3.8e-14 Score=90.94 Aligned_cols=64 Identities=22% Similarity=0.215 Sum_probs=47.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC--chHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG--DGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||+|||||+++|+|++++..+++...+....... ....+..++|++|++
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 85 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDF 85 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCC
Confidence 5678999999999999999999999999999988887765432111111 123345688888874
No 87
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=3.1e-14 Score=100.07 Aligned_cols=62 Identities=23% Similarity=0.189 Sum_probs=49.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.+++.|.+..++.... .....+++++|++|++
T Consensus 26 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~--~~~~~~r~ig~vfQ~~ 87 (351)
T PRK11432 26 NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVT--HRSIQQRDICMVFQSY 87 (351)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECC--CCCHHHCCEEEEeCCc
Confidence 5778999999999999999999999999999999888765543211 2234456799999985
No 88
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=4.6e-14 Score=92.48 Aligned_cols=60 Identities=20% Similarity=0.185 Sum_probs=46.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.++..|++...+.... . ..+.+++|++|++
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~---~-~~~~~i~~~~q~~ 79 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD---I-AARNRIGYLPEER 79 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchh---H-HHHccEEEeccCC
Confidence 5778999999999999999999999999999998888765432111 1 2344678888874
No 89
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.45 E-value=4.1e-14 Score=93.26 Aligned_cols=64 Identities=22% Similarity=0.203 Sum_probs=47.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.++..|++...+...........+..++|++|++
T Consensus 24 ~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 87 (220)
T cd03245 24 SLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDV 87 (220)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCC
Confidence 4678999999999999999999999999999888777755432111112223345688999875
No 90
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.45 E-value=5.1e-14 Score=92.13 Aligned_cols=62 Identities=18% Similarity=0.102 Sum_probs=48.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.++..|++...+...... ...+.+++|++|++
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~ 81 (208)
T cd03268 20 SLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGALIEAP 81 (208)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEecCCC
Confidence 467889999999999999999999999999998888876654321111 23345688999875
No 91
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.45 E-value=3.7e-14 Score=90.97 Aligned_cols=63 Identities=13% Similarity=0.181 Sum_probs=47.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|.||||||||||+++|+|+.++..+++..++...... ....+..++|++|++
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~ 84 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISVLNQRP 84 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEEEccCC
Confidence 577899999999999999999999999999998877775543211111 223445688999875
No 92
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.45 E-value=5e-14 Score=92.42 Aligned_cols=64 Identities=20% Similarity=0.121 Sum_probs=47.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC---chHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG---DGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|++++..|++...+....... ....+..++|++|++
T Consensus 21 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~ 87 (214)
T cd03292 21 NISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDF 87 (214)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCc
Confidence 4678899999999999999999999999999998887765432111111 112345688999875
No 93
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.45 E-value=4.6e-14 Score=106.34 Aligned_cols=68 Identities=19% Similarity=0.186 Sum_probs=59.7
Q ss_pred HHHHh--cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 33 EYYEE--MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 33 ~~~~~--~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
....+ +++++|+.++|+|+||||||||+|.+.|++.|..|+|..++......+....|+.+++|+|++
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~ 556 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDP 556 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccc
Confidence 34443 668999999999999999999999999999999999988877767778888889999999985
No 94
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.45 E-value=4.9e-14 Score=95.48 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=48.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.++..|.+...+...........+.+++|++|++
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 90 (265)
T PRK10253 27 TVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNA 90 (265)
T ss_pred ceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccC
Confidence 5678899999999999999999999999999988777765432111122223345689999875
No 95
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.45 E-value=5.7e-14 Score=92.96 Aligned_cols=64 Identities=19% Similarity=0.164 Sum_probs=48.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.++..|++...+...........+..++|++|++
T Consensus 34 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 97 (226)
T cd03248 34 SFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEP 97 (226)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEeccc
Confidence 4678999999999999999999999999999988887765432211122223345688888874
No 96
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.45 E-value=4.9e-14 Score=92.52 Aligned_cols=64 Identities=22% Similarity=0.141 Sum_probs=47.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++++..|++...+........ ...+..++|++|++
T Consensus 22 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~ 88 (214)
T TIGR02673 22 SLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDF 88 (214)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecCh
Confidence 56789999999999999999999999999998888877654321111111 12345688998874
No 97
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.45 E-value=1.5e-14 Score=93.25 Aligned_cols=75 Identities=17% Similarity=0.237 Sum_probs=56.2
Q ss_pred hhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhhc
Q psy16321 25 VELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVRN 101 (102)
Q Consensus 25 ~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~~ 101 (102)
+.+.+.+...-.++.++.++.++|+||||+|||||++.|||+..|..+.+..++.... ......+-+.++||+.|
T Consensus 7 V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t--~~~P~~RPVSmlFQEnN 81 (231)
T COG3840 7 VRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHT--ASPPAERPVSMLFQENN 81 (231)
T ss_pred eEEeeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecC--cCCcccCChhhhhhccc
Confidence 4555566555567789999999999999999999999999999999888776654221 22233445778888754
No 98
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.45 E-value=2.8e-14 Score=95.41 Aligned_cols=65 Identities=25% Similarity=0.207 Sum_probs=52.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh-ccCchHHHHHHccchhhhc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK-YLGDGPKLVRVALVPEVRN 101 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~q~~~ 101 (102)
++.+.+|+.++|+||||||||||++.++|++.|..+.+...+.... .....+.+++++||||++.
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd 89 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPD 89 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcc
Confidence 5678999999999999999999999999999999888755443222 1334566778999999975
No 99
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=4.3e-14 Score=96.50 Aligned_cols=64 Identities=16% Similarity=0.075 Sum_probs=49.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||+|||||+++|+|+.+|..|.+...+...........+.+++|++|++
T Consensus 27 sl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~ 90 (279)
T PRK13635 27 SFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNP 90 (279)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCH
Confidence 4678999999999999999999999999999999887765543222122223455789999875
No 100
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.44 E-value=5e-14 Score=92.72 Aligned_cols=63 Identities=19% Similarity=0.168 Sum_probs=47.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.++..|++...+..... .....+..++|++|++
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~ 87 (218)
T cd03266 25 SFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRLGFVSDST 87 (218)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhEEEecCCc
Confidence 46788999999999999999999999999999888877654321111 1123345788999875
No 101
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.44 E-value=4.9e-14 Score=97.42 Aligned_cols=63 Identities=19% Similarity=0.163 Sum_probs=49.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+++|+|++.|+.|.+...+..... .....+.+++|++|++
T Consensus 27 sl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~-~~~~~~~~ig~v~q~~ 89 (306)
T PRK13537 27 SFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPS-RARHARQRVGVVPQFD 89 (306)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEeccc-chHHHHhcEEEEeccC
Confidence 57788999999999999999999999999999998877654432111 1123456799999985
No 102
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.44 E-value=4e-14 Score=99.56 Aligned_cols=62 Identities=23% Similarity=0.202 Sum_probs=49.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+++|+|+..|+.|++...+.... .....++.++|+||++
T Consensus 24 s~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~--~~~~~~r~ig~v~Q~~ 85 (353)
T TIGR03265 24 SLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT--RLPPQKRDYGIVFQSY 85 (353)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECC--CCCHHHCCEEEEeCCc
Confidence 5778899999999999999999999999999999888765543211 1223456799999985
No 103
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=4.1e-14 Score=96.15 Aligned_cols=64 Identities=11% Similarity=0.089 Sum_probs=48.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.++..|++..++...........+.+++|++|++
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~ 92 (271)
T PRK13632 29 SFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNP 92 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCH
Confidence 4678899999999999999999999999999988887765443211112223445688999875
No 104
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.44 E-value=3.6e-14 Score=99.47 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=48.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch---HHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG---PKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+++|+|+.+|+.|.+...+......... ..+++++|+||++
T Consensus 25 sl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~ 91 (343)
T TIGR02314 25 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHF 91 (343)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCc
Confidence 567899999999999999999999999999999988876554321111111 2345699999985
No 105
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=5.3e-14 Score=95.32 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=47.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++++..|.+...+...........+..++|++|++
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 94 (265)
T PRK10575 31 SLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQL 94 (265)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCC
Confidence 5678899999999999999999999999999888777765432111122233345688998874
No 106
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=5.5e-14 Score=96.44 Aligned_cols=66 Identities=15% Similarity=0.050 Sum_probs=53.2
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch--hh-hhccCchHHHHHHccchhhhc
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE--LI-QKYLGDGPKLVRVALVPEVRN 101 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~--~~-~~~~~~~~~~~~~~~~~q~~~ 101 (102)
.++.+++|++++++|.||+|||||+|+|.++..|+.|.+..++ +. ....+....|++++++||++|
T Consensus 25 vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 25 VSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred ceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 3678999999999999999999999999999999988776554 22 122344566778999999875
No 107
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=5.1e-14 Score=92.46 Aligned_cols=62 Identities=19% Similarity=0.210 Sum_probs=46.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.+|..|++...+..... ....+.+++|++|++
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~--~~~~~~~i~~v~q~~ 81 (213)
T cd03259 20 SLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTG--VPPERRNIGMVFQDY 81 (213)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCc--CchhhccEEEEcCch
Confidence 56789999999999999999999999999999888877654321111 112234688888874
No 108
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=6.5e-14 Score=94.30 Aligned_cols=64 Identities=25% Similarity=0.272 Sum_probs=47.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++++..|.+...+...........+..++|++|++
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 85 (255)
T PRK11231 22 SLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHH 85 (255)
T ss_pred eeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccC
Confidence 4678899999999999999999999999999888777765432111112223345688998874
No 109
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.44 E-value=2.2e-14 Score=88.02 Aligned_cols=64 Identities=25% Similarity=0.262 Sum_probs=49.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|...+..+.+..++...........+..++|++|+.
T Consensus 5 ~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 68 (137)
T PF00005_consen 5 SLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDP 68 (137)
T ss_dssp EEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSH
T ss_pred EEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccc
Confidence 4667899999999999999999999999999998888765543322223344556788888873
No 110
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.44 E-value=4.8e-14 Score=95.66 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=47.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+++|..|.+...+...........+.+++|++|++
T Consensus 33 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 96 (267)
T PRK15112 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDP 96 (267)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCc
Confidence 5778999999999999999999999999999998887765432111111112234588888874
No 111
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.44 E-value=5.4e-14 Score=93.33 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=46.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.+|..|.+...+.......... .+..++|++|++
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 84 (232)
T cd03218 20 SLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEA 84 (232)
T ss_pred eeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCc
Confidence 4678899999999999999999999999999988887765432111111112 223588888874
No 112
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.43 E-value=1.2e-13 Score=90.89 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=56.2
Q ss_pred hhhcCChHHHH--hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 26 ELPLTHPEYYE--EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 26 ~~~~~~~~~~~--~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
.+.+..+.+.. ++++.+|+..+|+||||+|||||+++|+|++.|+.+++...+.....+...+..++.+..+|+.
T Consensus 8 s~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s 84 (259)
T COG4559 8 SYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNS 84 (259)
T ss_pred EEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCc
Confidence 34444445544 4568899999999999999999999999999999888877765444445555555666777754
No 113
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.43 E-value=6.7e-14 Score=92.28 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=47.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH---H-HHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP---K-LVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~---~-~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.++..|.+...+.......... . +.+++|++|++
T Consensus 25 sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 92 (221)
T TIGR02211 25 SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFH 92 (221)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccc
Confidence 4778999999999999999999999999999998887765432111111111 1 24588999874
No 114
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.43 E-value=5.9e-14 Score=94.79 Aligned_cols=64 Identities=22% Similarity=0.270 Sum_probs=47.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|++++|+||||||||||+++|+|+.++..|++...+...........+..++|++|++
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 85 (258)
T PRK13548 22 SLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHS 85 (258)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCC
Confidence 4678899999999999999999999999999988777765432111112223345688998874
No 115
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.43 E-value=8.4e-14 Score=89.51 Aligned_cols=62 Identities=23% Similarity=0.258 Sum_probs=45.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPE 98 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q 98 (102)
++.+.+|+.++|.||||||||||+++|+|+.++..|.+...+...........+..++|++|
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q 80 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ 80 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH
Confidence 56789999999999999999999999999999988877654321111122233446777775
No 116
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=5.8e-14 Score=93.39 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=47.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH---H-HHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP---K-LVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~---~-~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++++..|.+...+.......... . +.+++|++|++
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~ 96 (233)
T PRK11629 29 SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFH 96 (233)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCc
Confidence 5678999999999999999999999999999998888765543211111111 1 23588999874
No 117
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.43 E-value=4.6e-14 Score=95.98 Aligned_cols=76 Identities=21% Similarity=0.184 Sum_probs=57.5
Q ss_pred hhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh--hh--hccCchHHHHHHccchhhhc
Q psy16321 26 ELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL--IQ--KYLGDGPKLVRVALVPEVRN 101 (102)
Q Consensus 26 ~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~--~~--~~~~~~~~~~~~~~~~q~~~ 101 (102)
...+....+-.++.++...+++|+|+||+|||||+++|+|+.+|+.+.|..++. .. +.......+++++||||+.+
T Consensus 7 ~~~lG~~~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDAR 86 (352)
T COG4148 7 RQRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDAR 86 (352)
T ss_pred hhhcCceEEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccc
Confidence 344455555566777766899999999999999999999999999877765543 22 33345667789999999864
No 118
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=7.2e-14 Score=95.27 Aligned_cols=64 Identities=17% Similarity=0.023 Sum_probs=48.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||+|||||+++|+|+..|..|.+...+...........+.+++|++|++
T Consensus 24 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 87 (277)
T PRK13652 24 NFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNP 87 (277)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCc
Confidence 4678999999999999999999999999999999888765443211112233445688999875
No 119
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.43 E-value=5e-14 Score=99.76 Aligned_cols=62 Identities=19% Similarity=0.155 Sum_probs=49.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.++..|.|...+.... .....+++++|+||++
T Consensus 34 sl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~--~~~~~~r~ig~vfQ~~ 95 (375)
T PRK09452 34 DLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT--HVPAENRHVNTVFQSY 95 (375)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC--CCCHHHCCEEEEecCc
Confidence 5778999999999999999999999999999998887765543211 2233456799999985
No 120
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.43 E-value=8.9e-14 Score=102.75 Aligned_cols=64 Identities=20% Similarity=0.131 Sum_probs=54.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++++|+.++|+||||||||||+++|+|+++|..|++..++...........+..++|++|++
T Consensus 363 ~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~ 426 (582)
T PRK11176 363 NFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNV 426 (582)
T ss_pred eEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCc
Confidence 4568899999999999999999999999999999888877665444555566777899999985
No 121
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.43 E-value=6.3e-14 Score=96.65 Aligned_cols=63 Identities=19% Similarity=0.194 Sum_probs=48.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+..|..|.+...+..... .....+.+++|++|++
T Consensus 24 sl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~ 86 (303)
T TIGR01288 24 SFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-RARLARVAIGVVPQFD 86 (303)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-cHHHHhhcEEEEeccc
Confidence 46789999999999999999999999999999988887654321111 1123455689999875
No 122
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.43 E-value=5.1e-14 Score=100.45 Aligned_cols=64 Identities=28% Similarity=0.286 Sum_probs=49.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
+|.+.+|++++|+||||||||||+|+|+|+++|..|.+...+.........+.+++++|++|++
T Consensus 23 s~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~ 86 (402)
T PRK09536 23 DLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDT 86 (402)
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCC
Confidence 4678999999999999999999999999999998887765543222222334456789999875
No 123
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.43 E-value=6.9e-14 Score=94.25 Aligned_cols=64 Identities=25% Similarity=0.227 Sum_probs=47.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||+|||||+++|+|++++..|++...+...........+..++|++|++
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 84 (256)
T TIGR03873 21 DVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDS 84 (256)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccC
Confidence 4678899999999999999999999999999988777765432211122223344688988875
No 124
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.43 E-value=7.4e-14 Score=92.52 Aligned_cols=64 Identities=19% Similarity=0.161 Sum_probs=47.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH---H-HHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP---K-LVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~---~-~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+++|..|.+...+.......... . +.+++|++|++
T Consensus 30 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 97 (228)
T PRK10584 30 ELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSF 97 (228)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEccc
Confidence 5778999999999999999999999999999998887765432111111111 1 23588888874
No 125
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.43 E-value=3e-14 Score=96.06 Aligned_cols=64 Identities=17% Similarity=0.119 Sum_probs=47.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhh-----hhccCchH----HHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI-----QKYLGDGP----KLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~-----~~~~~~~~----~~~~~~~~~q~~ 100 (102)
++++.+|+.++|.||||||||||+++|+|+++|..|++...+.. ........ .+..++|++|++
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~ 98 (258)
T PRK11701 26 SFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHP 98 (258)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCc
Confidence 56789999999999999999999999999999988877655431 11111111 123588999875
No 126
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=6.2e-14 Score=98.23 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=48.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch---HHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG---PKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+++|..|++...+......... ..+.+++|++|++
T Consensus 25 sl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~ 91 (343)
T PRK11153 25 SLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHF 91 (343)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCC
Confidence 577899999999999999999999999999999888876554321111111 2245689999875
No 127
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=9e-14 Score=93.28 Aligned_cols=64 Identities=19% Similarity=0.104 Sum_probs=46.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+..+ ..|++...+...........+.+++|++|++
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 91 (250)
T PRK14247 23 NLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIP 91 (250)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccC
Confidence 467889999999999999999999999999864 4677654432111112233445688999875
No 128
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.42 E-value=6.9e-14 Score=91.27 Aligned_cols=64 Identities=14% Similarity=0.061 Sum_probs=47.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc----hHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD----GPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+++|..|++...+........ ...+++++|++|++
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 85 (206)
T TIGR03608 18 NLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNF 85 (206)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecch
Confidence 56788999999999999999999999999999988877654332111111 12334688888874
No 129
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.42 E-value=9.2e-14 Score=92.60 Aligned_cols=63 Identities=21% Similarity=0.217 Sum_probs=47.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.+|..|.+...+....... ......++|++|++
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~-~~~~~~i~~~~q~~ 83 (236)
T TIGR03864 21 SFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAP-RAALARLGVVFQQP 83 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCC-hhhhhhEEEeCCCC
Confidence 4678899999999999999999999999999998887765432111111 12234688998874
No 130
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=6.6e-14 Score=95.94 Aligned_cols=64 Identities=19% Similarity=0.106 Sum_probs=49.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc--CchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL--GDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++.|..|.+...+...... .....+.+++|++|++
T Consensus 27 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~ 92 (287)
T PRK13637 27 NIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYP 92 (287)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCc
Confidence 467899999999999999999999999999999888776554321111 1123456789999975
No 131
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=7.6e-14 Score=95.55 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=49.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc----cCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY----LGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+..+..|.|...+..... ......+.+++|++|++
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~ 94 (286)
T PRK13646 27 NTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFP 94 (286)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecCh
Confidence 46789999999999999999999999999999988877655432111 11124456799999975
No 132
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.42 E-value=1.2e-13 Score=90.11 Aligned_cols=63 Identities=17% Similarity=0.076 Sum_probs=47.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.++..|++...+..... .....+.+++|++|++
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~~~q~~ 83 (200)
T PRK13540 21 SFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCFVGHRS 83 (200)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEEecccc
Confidence 46788999999999999999999999999999988877654321111 1123345688888764
No 133
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.42 E-value=5.7e-14 Score=99.09 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=48.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHH----HHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPK----LVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~q~~ 100 (102)
+|++.+|+.++|+||||||||||+++|+|+..|..|++...+.........+. ++.++|++|++
T Consensus 13 s~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 13 DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred EEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 57789999999999999999999999999999998877655432121222222 44689999874
No 134
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.42 E-value=7e-14 Score=97.92 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=48.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
+|++.+|++++|+||||||||||+++|+|++.|+.|.+...+...... ..+.+.+++|++|++
T Consensus 61 s~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig~v~q~~ 123 (340)
T PRK13536 61 SFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR-ARLARARIGVVPQFD 123 (340)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc-hHHHhccEEEEeCCc
Confidence 467899999999999999999999999999999988776544321111 123456789999874
No 135
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=6.7e-14 Score=99.20 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=49.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+++|+|+..++.|.+...+.... .....++.++|+||++
T Consensus 39 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~--~~~~~~r~ig~vfQ~~ 100 (377)
T PRK11607 39 SLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS--HVPPYQRPINMMFQSY 100 (377)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC--CCCHHHCCEEEEeCCC
Confidence 5778899999999999999999999999999999887765543211 1234456799999985
No 136
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=7.9e-14 Score=93.10 Aligned_cols=64 Identities=17% Similarity=0.133 Sum_probs=47.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.++..|.+...+.......... .+..++|++|++
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 87 (241)
T PRK10895 23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEA 87 (241)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCC
Confidence 5678999999999999999999999999999988777765432111111112 234688998875
No 137
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.42 E-value=6e-14 Score=90.31 Aligned_cols=64 Identities=20% Similarity=0.144 Sum_probs=47.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC-chHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG-DGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||+|||||+++|+|++++..|++...+....... ....+.+++|++|++
T Consensus 20 s~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 84 (182)
T cd03215 20 SFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDR 84 (182)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCc
Confidence 5678999999999999999999999999999998887765542211111 122344688999874
No 138
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.42 E-value=1.2e-13 Score=92.00 Aligned_cols=71 Identities=10% Similarity=0.079 Sum_probs=52.8
Q ss_pred CChHHHH--hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321 30 THPEYYE--EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR 100 (102)
Q Consensus 30 ~~~~~~~--~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~ 100 (102)
..+..+. ++++.+|++++|+||||||||||+|+|.|++.|+.|+|...........+ .+.+++++++||..
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~g 94 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQG 94 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeecc
Confidence 3444444 46789999999999999999999999999999998777654332222222 24456799999973
No 139
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.42 E-value=7.6e-14 Score=104.93 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=54.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++++|+.++|+||||||||||+++|+|++.|..|.+..++...........+.+++|++|++
T Consensus 473 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~ 536 (686)
T TIGR03797 473 SLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNG 536 (686)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCC
Confidence 3668899999999999999999999999999999888877665445556667778899999986
No 140
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.42 E-value=9.5e-14 Score=104.70 Aligned_cols=64 Identities=22% Similarity=0.219 Sum_probs=55.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+||||||||||+++|+|+++|..|.+..++.........+.+.+++|++|++
T Consensus 499 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~ 562 (710)
T TIGR03796 499 SLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDI 562 (710)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCC
Confidence 4568899999999999999999999999999999888877665545566667788899999986
No 141
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=7.1e-14 Score=93.30 Aligned_cols=62 Identities=21% Similarity=0.175 Sum_probs=46.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++++..|.+...+....... ..+.+++|++|++
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~ 83 (239)
T cd03296 22 SLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP--VQERNVGFVFQHY 83 (239)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC--ccccceEEEecCC
Confidence 4678899999999999999999999999999988887765432111111 1234578888874
No 142
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.42 E-value=9.4e-14 Score=94.08 Aligned_cols=64 Identities=22% Similarity=0.100 Sum_probs=47.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch---HHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG---PKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++++..|++...+......... ..+..++|++|++
T Consensus 31 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~ 97 (265)
T TIGR02769 31 SLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDS 97 (265)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecCh
Confidence 467899999999999999999999999999999888776554221111111 1234689999874
No 143
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.42 E-value=1e-13 Score=95.62 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=48.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|++++|+||||||||||+++|+|+..|+.|.+...+..... .....+.+++|++|++
T Consensus 22 s~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~~~q~~ 84 (301)
T TIGR03522 22 SFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYLPEHN 84 (301)
T ss_pred EEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEEecCCC
Confidence 46789999999999999999999999999999998887654421111 1223455789999875
No 144
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.41 E-value=6.6e-14 Score=98.48 Aligned_cols=62 Identities=23% Similarity=0.180 Sum_probs=48.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+++++.|.+...+.... .....+++++|++|++
T Consensus 22 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~--~~~~~~r~i~~v~Q~~ 83 (353)
T PRK10851 22 SLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS--RLHARDRKVGFVFQHY 83 (353)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC--CCCHHHCCEEEEecCc
Confidence 5678899999999999999999999999999998887765432111 1123345789999975
No 145
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=9e-14 Score=91.14 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=48.3
Q ss_pred HHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 35 YEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 35 ~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
..++++.+|+.++|+||||||||||+++|+|++++..|.+...+..... ....+..++|++|++
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~~~i~~~~q~~ 79 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTA--APPADRPVSMLFQEN 79 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCc--CCHhHccEEEEeccc
Confidence 4568889999999999999999999999999999887777654321111 112335688888875
No 146
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.41 E-value=1.4e-13 Score=92.31 Aligned_cols=64 Identities=19% Similarity=0.139 Sum_probs=47.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc-----EEEEccchhhhhc--cCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT-----FLRVVGSELIQKY--LGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~-----~~~i~~~~~~~~~--~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+++|+|+..|. .|++...+..... ......+..++|++|++
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 91 (247)
T TIGR00972 21 NLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKP 91 (247)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCc
Confidence 5778999999999999999999999999999876 7777654321111 11223345789999875
No 147
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.41 E-value=1.1e-13 Score=92.33 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=48.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc--CchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL--GDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+++|+|++++..|++...+...... .....+.+++|++|++
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 86 (240)
T PRK09493 21 DLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQF 86 (240)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEeccc
Confidence 567889999999999999999999999999998888776554321111 1123345688998874
No 148
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=1e-13 Score=94.45 Aligned_cols=64 Identities=19% Similarity=0.080 Sum_probs=49.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC-chHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG-DGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||+|||||+++|+|++++..|.+...+....... ....+.+++|++|++
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 86 (274)
T PRK13644 22 NLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNP 86 (274)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEECh
Confidence 4678999999999999999999999999999998887766543221111 123445689999875
No 149
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.41 E-value=9.8e-14 Score=91.80 Aligned_cols=63 Identities=24% Similarity=0.294 Sum_probs=49.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc--hhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS--ELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|++++|+||||+||||++++|+|+.++..+.|... ++. ........+..++||||..
T Consensus 23 sl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit-~~p~~~r~r~Gi~~VPegR 87 (237)
T COG0410 23 SLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDIT-GLPPHERARLGIAYVPEGR 87 (237)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecC-CCCHHHHHhCCeEeCcccc
Confidence 57789999999999999999999999999999987777654 332 2223444556789999865
No 150
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.41 E-value=1.1e-13 Score=104.28 Aligned_cols=64 Identities=19% Similarity=0.174 Sum_probs=55.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++++|+.++|+||||||||||+++|+|++.|..|.|..++.........+.+.+++|++|++
T Consensus 494 sl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~ 557 (708)
T TIGR01193 494 SLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEP 557 (708)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCc
Confidence 4568899999999999999999999999999999888877665555566677788899999985
No 151
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=1.1e-13 Score=94.66 Aligned_cols=64 Identities=14% Similarity=0.073 Sum_probs=46.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccE---EEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF---LRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++.+.. |.+...+...........+.+++|++|++
T Consensus 27 ~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~ 93 (282)
T PRK13640 27 SFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNP 93 (282)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECH
Confidence 46789999999999999999999999999998865 55544332111111223345789999875
No 152
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=9.5e-14 Score=95.27 Aligned_cols=64 Identities=20% Similarity=0.166 Sum_probs=48.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh----ccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK----YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+..+..|.+...+.... .......+.+++|++|++
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~ 94 (290)
T PRK13634 27 NVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFP 94 (290)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCc
Confidence 4678999999999999999999999999999998887765543211 111223445789999975
No 153
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=9.3e-14 Score=92.57 Aligned_cols=64 Identities=30% Similarity=0.247 Sum_probs=47.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.+|..|++...+.......... .+..++|++|++
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 89 (237)
T PRK11614 25 SLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGR 89 (237)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCc
Confidence 4678999999999999999999999999999998887765543211112122 344588888874
No 154
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=1.1e-13 Score=93.93 Aligned_cols=64 Identities=19% Similarity=0.046 Sum_probs=48.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc--cCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY--LGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+++|..|.+...+..... ......+.+++|++|++
T Consensus 21 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 86 (271)
T PRK13638 21 NLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDP 86 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeCh
Confidence 46789999999999999999999999999999988877654332111 11123345689999875
No 155
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.41 E-value=7.1e-13 Score=89.71 Aligned_cols=91 Identities=34% Similarity=0.548 Sum_probs=77.2
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+-.++||+.|.++.+...+-..+| +.+|+.|.++ .++.++++||||+|||.+++++++..+.+.+.+....+...+
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 456899999999999887765544 7888887775 478999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHccchh
Q psy16321 84 LGDGPKLVRVALVPE 98 (102)
Q Consensus 84 ~~~~~~~~~~~~~~q 98 (102)
+++..++.+..|..+
T Consensus 192 VGdgar~Ihely~rA 206 (368)
T COG1223 192 VGDGARRIHELYERA 206 (368)
T ss_pred hhhHHHHHHHHHHHH
Confidence 998887776665443
No 156
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.41 E-value=9e-14 Score=98.27 Aligned_cols=62 Identities=23% Similarity=0.233 Sum_probs=47.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+..|+.|.+...+.... .....+++++|++|++
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~--~~~~~~~~i~~v~Q~~ 84 (369)
T PRK11000 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMN--DVPPAERGVGMVFQSY 84 (369)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC--CCCHhHCCEEEEeCCc
Confidence 5678899999999999999999999999999998887765432111 1122345689999875
No 157
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=1e-13 Score=95.05 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=49.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh----ccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK----YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|++.|+.|.+...+.... .....+.+.+++|++|++
T Consensus 26 sl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~ 93 (288)
T PRK13643 26 DLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFP 93 (288)
T ss_pred EEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCc
Confidence 5678999999999999999999999999999998887765543211 111234456789999975
No 158
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.41 E-value=1.6e-13 Score=93.44 Aligned_cols=64 Identities=22% Similarity=0.207 Sum_probs=46.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc--------EEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT--------FLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|++++. .|.+...+...........+..++|++|++
T Consensus 21 sl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 21 SLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92 (272)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence 4678999999999999999999999999999876 666654432111112223334578888874
No 159
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=1.3e-13 Score=94.05 Aligned_cols=64 Identities=16% Similarity=0.106 Sum_probs=48.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc----cCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY----LGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+++|..|.+...+..... ......+.+++|++|++
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~ 94 (280)
T PRK13649 27 NLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFP 94 (280)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeCh
Confidence 46788999999999999999999999999999988877654321111 11123445689999874
No 160
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.40 E-value=9.1e-14 Score=91.18 Aligned_cols=62 Identities=27% Similarity=0.254 Sum_probs=46.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++++..|++...+....... ..+.+++|++|++
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~--~~~~~i~~~~q~~ 81 (213)
T cd03301 20 NLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLP--PKDRDIAMVFQNY 81 (213)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC--cccceEEEEecCh
Confidence 4678999999999999999999999999999988887765432111111 1224688888874
No 161
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.40 E-value=1.1e-13 Score=97.63 Aligned_cols=62 Identities=24% Similarity=0.210 Sum_probs=49.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccE--EEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF--LRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+..|+. |.+...+.... .....+++++|++|++
T Consensus 25 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~--~~~~~~r~ig~vfQ~~ 88 (362)
T TIGR03258 25 SLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLT--HAPPHKRGLALLFQNY 88 (362)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECC--CCCHHHCCEEEEECCc
Confidence 46788999999999999999999999999999988 88865543211 2223455789999985
No 162
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=1.7e-13 Score=92.09 Aligned_cols=64 Identities=17% Similarity=0.051 Sum_probs=46.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc-----EEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT-----FLRVVGSELIQK--YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~-----~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+++++ .|++...+.... .......+.+++|++|++
T Consensus 24 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (253)
T PRK14267 24 DLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYP 94 (253)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCC
Confidence 4678899999999999999999999999998763 677654432111 111223345689999875
No 163
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=1.6e-13 Score=93.72 Aligned_cols=64 Identities=16% Similarity=0.082 Sum_probs=48.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC-chHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG-DGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++.+..|.+...+....... ..+.+.+++|++|++
T Consensus 30 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~ 94 (280)
T PRK13633 30 NLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNP 94 (280)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecCh
Confidence 4678999999999999999999999999999998887765543211111 123456789999875
No 164
>KOG0730|consensus
Probab=99.40 E-value=1e-12 Score=97.07 Aligned_cols=90 Identities=47% Similarity=0.834 Sum_probs=84.5
Q ss_pred cccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH
Q psy16321 9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP 88 (102)
Q Consensus 9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~ 88 (102)
+++||+..+.+.+++.+.+++.++..+.+++++++.+++++||||+|||.++++++.......+.+++..+.+++.++++
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte 263 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETE 263 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccchh
Q psy16321 89 KLVRVALVPE 98 (102)
Q Consensus 89 ~~~~~~~~~q 98 (102)
...|..|...
T Consensus 264 ~~LR~~f~~a 273 (693)
T KOG0730|consen 264 SNLRKAFAEA 273 (693)
T ss_pred HHHHHHHHHH
Confidence 8877666543
No 165
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=1.8e-13 Score=91.44 Aligned_cols=64 Identities=14% Similarity=0.058 Sum_probs=47.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh---ccC---chHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK---YLG---DGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~---~~~---~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+..+..|.+...+.... ... ....+.+++|++|++
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (242)
T PRK11124 22 TLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQY 91 (242)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCc
Confidence 4678899999999999999999999999999988887765442110 001 122345688999875
No 166
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.40 E-value=1.7e-13 Score=92.51 Aligned_cols=64 Identities=20% Similarity=0.137 Sum_probs=48.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||+|||||+++|+|+.++..|.+...+...........+.+++|++|++
T Consensus 41 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~ 104 (257)
T cd03288 41 KAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDP 104 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCC
Confidence 4678899999999999999999999999999888777765432212222234456789999875
No 167
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.39 E-value=1.9e-13 Score=100.11 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=53.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+||||||||||+++|+|+++|..|.+..++.........+.+.+++|++|++
T Consensus 342 ~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~ 405 (529)
T TIGR02857 342 SFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHP 405 (529)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCC
Confidence 3568899999999999999999999999999999888876655444455566777899999986
No 168
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.39 E-value=1.4e-13 Score=93.41 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=47.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.+|..|.+...+........ ...+.+++|++|++
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~ 93 (269)
T PRK11831 27 SLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSG 93 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEeccc
Confidence 57789999999999999999999999999999888877654321111111 12234588998874
No 169
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.39 E-value=2.2e-13 Score=91.38 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=47.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC--------chHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG--------DGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|++++..|.+...+....... ....+.+++|++|++
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 94 (250)
T PRK11264 23 DLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNF 94 (250)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCc
Confidence 4678899999999999999999999999999988887754432111100 112345688999874
No 170
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.39 E-value=1.5e-13 Score=101.72 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=53.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+||||||||||+++|+|++ |..|+|..++...........+..++|++|++
T Consensus 370 ~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~ 432 (588)
T PRK11174 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNP 432 (588)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCC
Confidence 4668899999999999999999999999999 88888876655445556667778899999986
No 171
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1.8e-13 Score=92.04 Aligned_cols=64 Identities=17% Similarity=0.098 Sum_probs=46.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.++..|.+...+.......... .+..++|++|++
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 89 (255)
T PRK11300 25 NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHV 89 (255)
T ss_pred eeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCc
Confidence 5678899999999999999999999999999998887765543211111111 223467788874
No 172
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.39 E-value=2e-13 Score=103.15 Aligned_cols=64 Identities=25% Similarity=0.221 Sum_probs=54.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++++|+.++|+||||||||||+++|+|+++|..|+|..++...........+.+++|++|++
T Consensus 501 sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~ 564 (711)
T TIGR00958 501 TFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEP 564 (711)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCc
Confidence 4668899999999999999999999999999999888876655445556667778899999986
No 173
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1.4e-13 Score=93.84 Aligned_cols=64 Identities=14% Similarity=0.039 Sum_probs=48.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.++..|.+...+.........+.+..++|++|++
T Consensus 27 ~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 90 (277)
T PRK13642 27 SFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNP 90 (277)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECH
Confidence 4678999999999999999999999999999998777765432111112223445689999975
No 174
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1.4e-13 Score=95.78 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=48.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhh-hc---------------cCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ-KY---------------LGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~-~~---------------~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|++.+..|.|...+... .. ......+.+++|++|++
T Consensus 46 sl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~ 125 (320)
T PRK13631 46 SYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFP 125 (320)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECc
Confidence 467899999999999999999999999999999888776543211 11 01223456789999975
No 175
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.39 E-value=2e-13 Score=91.12 Aligned_cols=64 Identities=19% Similarity=0.166 Sum_probs=44.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhh--CccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT--SATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~--~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+. .+..|.+...+.......... .+..++|++|++
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 86 (243)
T TIGR01978 20 NLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYP 86 (243)
T ss_pred ceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccc
Confidence 5678999999999999999999999999985 567777655432111111111 123477888875
No 176
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.39 E-value=1.9e-13 Score=91.24 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=47.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||+|||||+++|+|+++|..|.+...+.......... .+..++|++|++
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 86 (242)
T TIGR03411 22 SLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKP 86 (242)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEecccc
Confidence 5678999999999999999999999999999988887765543211111111 223588888874
No 177
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.39 E-value=2.3e-13 Score=88.58 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=46.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+++|..+.+...+....... ...+..++|++|+.
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~ 82 (198)
T TIGR01189 20 SFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILYLGHLP 82 (198)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEEeccCc
Confidence 5678999999999999999999999999999988877765432111111 22335678888753
No 178
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.39 E-value=2.2e-13 Score=100.83 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=53.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+||||||||||+++|+|+++|..|++..++...........+..++|++|++
T Consensus 360 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 423 (574)
T PRK11160 360 SLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRV 423 (574)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccc
Confidence 3567899999999999999999999999999999888877655444555566677899999986
No 179
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.39 E-value=1.5e-13 Score=87.16 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=45.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc-hHHHHHHccchh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD-GPKLVRVALVPE 98 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~q 98 (102)
++.+.+|+.++|.||||||||||+++|+|+.+|..+.+...+........ ...+.+++|++|
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q 82 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ 82 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe
Confidence 46789999999999999999999999999999988877655432111111 122345777765
No 180
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.38 E-value=1.4e-13 Score=90.50 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=48.1
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
.++.+.+|+.++|+||||+|||||+++|+|+.++..|++...+..... ....+..++|++|++
T Consensus 17 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~~~~~~i~~v~q~~ 79 (213)
T TIGR01277 17 FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTG--LAPYQRPVSMLFQEN 79 (213)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccc--CChhccceEEEeccC
Confidence 467889999999999999999999999999999988877654321111 112345688988875
No 181
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=2.4e-13 Score=91.11 Aligned_cols=64 Identities=19% Similarity=0.045 Sum_probs=46.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC---ccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS---ATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||+|||||+++|+|+.. +..|++...+...........+..++|++|++
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~ 88 (246)
T PRK14269 22 NMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQP 88 (246)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCC
Confidence 46789999999999999999999999999874 45676654432111122223445689999875
No 182
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.38 E-value=8.8e-14 Score=91.78 Aligned_cols=59 Identities=20% Similarity=0.152 Sum_probs=44.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+..|..|.+...+.... ..+.+++|++|++
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~ 82 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT-----GPGPDRGYVFQQD 82 (220)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc-----cccCcEEEEeccc
Confidence 5678899999999999999999999999999888887765432111 1123577777764
No 183
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=1.9e-13 Score=93.14 Aligned_cols=64 Identities=22% Similarity=0.099 Sum_probs=48.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc--cCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY--LGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+++|+|++++..|.+...+..... ......+.+++|++|++
T Consensus 22 sl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 87 (275)
T PRK13639 22 NFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNP 87 (275)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeCh
Confidence 57789999999999999999999999999999988877655432111 11123455789999985
No 184
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.38 E-value=2.3e-13 Score=100.86 Aligned_cols=64 Identities=20% Similarity=0.109 Sum_probs=53.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++++|+.++|+|+||||||||+++|+|++.|..|.+..++...........+.+++|++|++
T Consensus 361 ~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~ 424 (592)
T PRK10790 361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDP 424 (592)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCC
Confidence 4668899999999999999999999999999999888776654444555667778899999986
No 185
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.38 E-value=2.1e-13 Score=102.65 Aligned_cols=64 Identities=20% Similarity=0.228 Sum_probs=54.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++++|+.++|+||||||||||++.|+|+++|..|++..++...........+..++|++|++
T Consensus 485 ~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~ 548 (694)
T TIGR03375 485 SLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDP 548 (694)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCCh
Confidence 4668899999999999999999999999999999888876665445556667778899999985
No 186
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.38 E-value=1.6e-13 Score=93.17 Aligned_cols=75 Identities=11% Similarity=0.101 Sum_probs=50.6
Q ss_pred hhhcCChHHHH--hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH----HHHHHccchhh
Q psy16321 26 ELPLTHPEYYE--EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP----KLVRVALVPEV 99 (102)
Q Consensus 26 ~~~~~~~~~~~--~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~q~ 99 (102)
...+.....+. ++++.+|++++|+||||||||||+++|+|++++..|.+...+.......... .+.+++|++|+
T Consensus 31 ~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~ 110 (269)
T cd03294 31 LKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQS 110 (269)
T ss_pred hhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecC
Confidence 33333433344 4678899999999999999999999999999998877765432111111111 12358888887
Q ss_pred h
Q psy16321 100 R 100 (102)
Q Consensus 100 ~ 100 (102)
+
T Consensus 111 ~ 111 (269)
T cd03294 111 F 111 (269)
T ss_pred c
Confidence 4
No 187
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=1.9e-13 Score=90.90 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=47.9
Q ss_pred HHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 35 YEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 35 ~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
..++++.+|+.++|+||||||||||+++|+|+..+..|.+...+...... ...+..++|++|++
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~ 80 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTT--PPSRRPVSMLFQEN 80 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcC--ChhhccEEEEeccc
Confidence 34678899999999999999999999999999998877776543211111 11234688888874
No 188
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.38 E-value=2.3e-13 Score=91.43 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=47.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC-------------chHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG-------------DGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~-------------~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+..+..|++...+....... ....+.+++|++|++
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 96 (252)
T TIGR03005 20 NFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSF 96 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCc
Confidence 5678999999999999999999999999999998887765432111110 012345688998874
No 189
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=2.2e-13 Score=93.20 Aligned_cols=64 Identities=17% Similarity=0.089 Sum_probs=48.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK--YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||+|||||+++|+|+.++..|.+...+.... .......+.+++|++|++
T Consensus 26 s~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~ 91 (283)
T PRK13636 26 NINIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDP 91 (283)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCc
Confidence 4678999999999999999999999999999998887765543211 111223455789999975
No 190
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.38 E-value=2.1e-13 Score=90.62 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=45.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc----cEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA----TFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|.||||||||||+++|+|+.+| ..|.+...+...... ...+..++|++|++
T Consensus 6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~ 71 (230)
T TIGR02770 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNP 71 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCc
Confidence 567889999999999999999999999999988 677765443211111 11224688888875
No 191
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.38 E-value=1.9e-13 Score=96.04 Aligned_cols=65 Identities=20% Similarity=0.199 Sum_probs=48.9
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc----cCchHHHHHHccchhhh
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY----LGDGPKLVRVALVPEVR 100 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~q~~ 100 (102)
.++++.+|+.++|+||||||||||+++|+|+.+|+.|.+...+..... ......+++++|++|++
T Consensus 17 vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 85 (352)
T PRK11144 17 VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDA 85 (352)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCc
Confidence 467889999999999999999999999999999988877654321111 01223345789999875
No 192
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.38 E-value=3.1e-13 Score=99.56 Aligned_cols=64 Identities=20% Similarity=0.156 Sum_probs=54.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+||||||||||+++|+|+++|..|.+..++.........+.+..++|++|++
T Consensus 352 nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~ 415 (571)
T TIGR02203 352 SLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDV 415 (571)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCc
Confidence 4568899999999999999999999999999999888877665445556667777899999986
No 193
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.37 E-value=2.8e-13 Score=88.58 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=46.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+++|..|.+...+...... ....+.+++|++|++
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~-~~~~~~~~~~~~~~~ 83 (204)
T PRK13538 21 SFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ-RDEYHQDLLYLGHQP 83 (204)
T ss_pred eEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc-hHHhhhheEEeCCcc
Confidence 567899999999999999999999999999999888776543211111 122344677777753
No 194
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.37 E-value=3e-13 Score=99.77 Aligned_cols=64 Identities=25% Similarity=0.350 Sum_probs=52.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++++|+.++|+||||||||||+++|+|++.|..|++..++...........+..++|++|++
T Consensus 360 nl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~ 423 (576)
T TIGR02204 360 NLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDP 423 (576)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCC
Confidence 4668899999999999999999999999999998887766554334445556667899999986
No 195
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=2e-13 Score=93.55 Aligned_cols=64 Identities=16% Similarity=0.062 Sum_probs=48.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc----CchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL----GDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||+|||||+++|+|+.+|..|.+.......... ...+.+..++|++|++
T Consensus 27 sl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~ 94 (287)
T PRK13641 27 SFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFP 94 (287)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeCh
Confidence 467899999999999999999999999999999888776544211110 1123345688999875
No 196
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.37 E-value=2.4e-13 Score=91.98 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=45.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.++..|.+...+.. ....+.+++|++|++
T Consensus 32 sl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~-----~~~~~~~i~~v~q~~ 90 (257)
T PRK11247 32 DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAP-----LAEAREDTRLMFQDA 90 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE-----HHHhhCceEEEecCc
Confidence 46788999999999999999999999999999988877543211 012334578888874
No 197
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.37 E-value=3.7e-13 Score=91.33 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=46.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhhc--cCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQKY--LGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~~--~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.++ ..|.|...+..... ......+.+++|++|++
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 109 (267)
T PRK14235 39 DLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKP 109 (267)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCC
Confidence 467899999999999999999999999999874 56776544321111 11223445689999875
No 198
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=2.4e-13 Score=93.97 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=36.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
++.+.+|+.++|+||||||||||+++|+|+++|..|.+...
T Consensus 27 sl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~ 67 (305)
T PRK13651 27 SVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWI 67 (305)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEe
Confidence 56789999999999999999999999999999988877653
No 199
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.37 E-value=2.8e-13 Score=90.40 Aligned_cols=77 Identities=22% Similarity=0.160 Sum_probs=51.2
Q ss_pred HHHHhhhhcCChHHHH--hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchh
Q psy16321 21 IKESVELPLTHPEYYE--EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPE 98 (102)
Q Consensus 21 i~~~~~~~~~~~~~~~--~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q 98 (102)
++..+...+.....+. ++.+.+|+.++|+||||||||||+++|+|+.+|..|++...+..... .....+.+++|++|
T Consensus 23 ~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~~ 101 (236)
T cd03267 23 LKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK-RRKKFLRRIGVVFG 101 (236)
T ss_pred HHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccc-cchhhcccEEEEcC
Confidence 3344434333334444 46688999999999999999999999999999988877654321111 11223345777763
No 200
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.37 E-value=3.3e-13 Score=88.11 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=46.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||+|||||+++|+|+..+..|.+...+...... ....+.+++|++|++
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~ 82 (201)
T cd03231 20 SFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ-RDSIARGLLYLGHAP 82 (201)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-cHHhhhheEEecccc
Confidence 467889999999999999999999999999998877775443211111 123445688888764
No 201
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.37 E-value=3.6e-13 Score=87.28 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=55.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhhc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVRN 101 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~~ 101 (102)
+|.+..++.++++|.||||||||++.|+|...|+.+++..++....+...+.+..++-++||++|
T Consensus 33 SFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpn 97 (267)
T COG4167 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPN 97 (267)
T ss_pred EEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCc
Confidence 46788999999999999999999999999999999988877665555555556677889999986
No 202
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.37 E-value=2.1e-13 Score=95.21 Aligned_cols=64 Identities=16% Similarity=0.084 Sum_probs=48.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch---HHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG---PKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+|+||||||||+++|+|++.+..|.|...+......... ..+.+++|++|++
T Consensus 41 sl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~ 107 (331)
T PRK15079 41 TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDP 107 (331)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCc
Confidence 577899999999999999999999999999998877776543221111111 2334689999985
No 203
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.37 E-value=2.9e-13 Score=100.25 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=53.1
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
+.+++|+.++|+||||||||||+++|+|+++|..|.+..++...........+.+++|++|++
T Consensus 356 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 418 (588)
T PRK13657 356 FEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDA 418 (588)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCc
Confidence 567899999999999999999999999999999887766654444556667778899999986
No 204
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.36 E-value=3.3e-13 Score=90.72 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=37.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~ 78 (102)
++++.+|+.++|+||||||||||+++|+|+.++..|++...+
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 64 (253)
T TIGR02323 23 SFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIM 64 (253)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEec
Confidence 577899999999999999999999999999999888776543
No 205
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.36 E-value=2.7e-13 Score=95.34 Aligned_cols=65 Identities=18% Similarity=0.134 Sum_probs=48.4
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc----CchHHHHHHccchhhh
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL----GDGPKLVRVALVPEVR 100 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~q~~ 100 (102)
-++.+.+|+.++|+||||||||||+++|+|+++|+.|.+...+...... .....++.++|++|++
T Consensus 16 isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~ 84 (354)
T TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEA 84 (354)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCC
Confidence 4677899999999999999999999999999999888776543211111 1123345688999875
No 206
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.36 E-value=2.6e-13 Score=88.62 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=36.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
++.+++|+.++|.||||||||||+++|+|+.++..|++...
T Consensus 25 s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~ 65 (204)
T cd03250 25 NLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVP 65 (204)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEc
Confidence 46689999999999999999999999999999887776543
No 207
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.36 E-value=4e-13 Score=91.24 Aligned_cols=64 Identities=20% Similarity=0.159 Sum_probs=47.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+..+..|.+...+........ ...+..++|++|++
T Consensus 32 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~ 98 (268)
T PRK10419 32 SLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDS 98 (268)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcCh
Confidence 46789999999999999999999999999999888877655431111111 12345688998874
No 208
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.35 E-value=3.9e-13 Score=88.51 Aligned_cols=61 Identities=15% Similarity=0.202 Sum_probs=46.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|++++..|++...+.... ....+..++|++|++
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~---~~~~~~~i~~~~q~~ 91 (214)
T PRK13543 31 DFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTAT---RGDRSRFMAYLGHLP 91 (214)
T ss_pred eEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEcc---chhhhhceEEeecCc
Confidence 4678999999999999999999999999999998888765542111 112234578888764
No 209
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.35 E-value=4.4e-13 Score=90.36 Aligned_cols=64 Identities=11% Similarity=0.093 Sum_probs=47.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc-------------CchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL-------------GDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|++++|+||||+|||||+++|+|+.++..|++...+...... .....+.+++|++|++
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 101 (257)
T PRK10619 25 SLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHF 101 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCc
Confidence 567899999999999999999999999999998888776543211100 0123345689999875
No 210
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.35 E-value=4.7e-13 Score=89.94 Aligned_cols=64 Identities=14% Similarity=0.100 Sum_probs=45.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccchhhhhc--cCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSELIQKY--LGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.. +..|++...+..... ......+..++|++|++
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 96 (253)
T PRK14242 26 SLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKP 96 (253)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCC
Confidence 46789999999999999999999999999864 356666544321111 11123345689999875
No 211
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=5.7e-13 Score=97.33 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=58.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++++|+.++|+|+||||||||+++|+|++.+..|++..++...........++++.+++|+|
T Consensus 341 ~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p 404 (559)
T COG4988 341 NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP 404 (559)
T ss_pred eeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCC
Confidence 5678999999999999999999999999999999999988887777777788889999999986
No 212
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.35 E-value=4.1e-13 Score=98.85 Aligned_cols=64 Identities=16% Similarity=0.004 Sum_probs=51.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+||||||||||+++|+|+++|..|.+..++...........+.+++|++|++
T Consensus 343 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 406 (547)
T PRK10522 343 NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDF 406 (547)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecCh
Confidence 4668899999999999999999999999999999888876554333334445667799999985
No 213
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.35 E-value=5.5e-13 Score=88.04 Aligned_cols=64 Identities=20% Similarity=0.163 Sum_probs=47.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||+|||||+++|+|++++..|++...+........ ...+..++|++|++
T Consensus 25 s~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (220)
T TIGR02982 25 NLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAH 91 (220)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCCh
Confidence 46688999999999999999999999999999988877654321111111 12345688998875
No 214
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.35 E-value=5.1e-13 Score=88.49 Aligned_cols=58 Identities=22% Similarity=0.260 Sum_probs=44.8
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
+.+.+|+.++|+||||||||||+++|+|+.++..|++..++... ...+.+++|++|++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~-----~~~~~~i~~v~q~~ 58 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASP-----GKGWRHIGYVPQRH 58 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc-----hHhhCcEEEecccc
Confidence 45789999999999999999999999999998888776543211 12234578888864
No 215
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.35 E-value=4.3e-13 Score=87.52 Aligned_cols=64 Identities=22% Similarity=0.197 Sum_probs=45.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhh--CccEEEEccchhhhhccCchHH-HHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT--SATFLRVVGSELIQKYLGDGPK-LVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~--~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+. .+..|++..++........... +.+++|++|++
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 86 (200)
T cd03217 20 NLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYP 86 (200)
T ss_pred ceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecCh
Confidence 4678999999999999999999999999994 6777766554321111111122 23488998875
No 216
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=2.6e-13 Score=88.72 Aligned_cols=63 Identities=25% Similarity=0.252 Sum_probs=46.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC---ccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS---ATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+++ +..+.+...+....... ...+.+++|++|++
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~~~i~~~~q~~ 92 (202)
T cd03233 27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYPGEIIYVSEED 92 (202)
T ss_pred EEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhcceEEEEeccc
Confidence 46789999999999999999999999999988 67777665432111111 23344688888864
No 217
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.35 E-value=5.6e-13 Score=96.94 Aligned_cols=64 Identities=16% Similarity=0.026 Sum_probs=46.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+++|..|.+...............+..++|++|++
T Consensus 23 sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~ 86 (490)
T PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRN 86 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCc
Confidence 5678999999999999999999999999999988777754321111111122344588888864
No 218
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.35 E-value=4.1e-13 Score=87.32 Aligned_cols=61 Identities=21% Similarity=0.200 Sum_probs=47.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhh--CccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT--SATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|.||||||||||+++|+|+. ++..|++...+.... ....+.+++|++|++
T Consensus 29 ~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~---~~~~~~~i~~~~q~~ 91 (194)
T cd03213 29 SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD---KRSFRKIIGYVPQDD 91 (194)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCc---hHhhhheEEEccCcc
Confidence 4678999999999999999999999999999 888887765432111 113345688888874
No 219
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.35 E-value=4.9e-13 Score=91.30 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=49.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||+|||||+++|+|++. ..|.|..++...........+.+++|++|++
T Consensus 24 sl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~ 86 (275)
T cd03289 24 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKV 86 (275)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCc
Confidence 46789999999999999999999999999987 5676665543222334445566799999986
No 220
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=7e-13 Score=89.22 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=46.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccch--hhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSE--LIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~--~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|++++ ..|++...+ +..........+..++|++|++
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 97 (254)
T PRK14273 27 NIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTP 97 (254)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecc
Confidence 467889999999999999999999999999886 356665433 2111111123345689999875
No 221
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.35 E-value=3.2e-13 Score=88.97 Aligned_cols=64 Identities=17% Similarity=0.109 Sum_probs=46.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC----chHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG----DGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+..+..|++...+....... ....+..++|++|++
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 88 (218)
T cd03290 21 NIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKP 88 (218)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCC
Confidence 4678999999999999999999999999999888777765432111111 112234588988875
No 222
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=8.3e-13 Score=88.70 Aligned_cols=64 Identities=20% Similarity=0.178 Sum_probs=46.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccch--hhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSE--LIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~--~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||+|||||+++|+|+..+ ..|.+...+ +..........+.+++|++|++
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (251)
T PRK14270 24 NLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKP 94 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCC
Confidence 467889999999999999999999999998764 456665443 2111111223455789999875
No 223
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.35 E-value=5.3e-13 Score=98.53 Aligned_cols=64 Identities=20% Similarity=0.279 Sum_probs=55.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+|||||||||+++.|.+++++..|.|..++...+.......+.++++++|++
T Consensus 349 s~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~ 412 (567)
T COG1132 349 SFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDP 412 (567)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccc
Confidence 4668999999999999999999999999999998777776555446677778888999999986
No 224
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=5.9e-13 Score=89.44 Aligned_cols=64 Identities=20% Similarity=0.195 Sum_probs=46.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc-----EEEEccch--hhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT-----FLRVVGSE--LIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~-----~~~i~~~~--~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|++.+. .|.+...+ +..........+..++|++|++
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 94 (251)
T PRK14249 24 NMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP 94 (251)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCC
Confidence 4678899999999999999999999999998875 36655433 2111111223345689999875
No 225
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=2.9e-13 Score=92.76 Aligned_cols=64 Identities=13% Similarity=0.111 Sum_probs=47.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh----cc-CchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK----YL-GDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~----~~-~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++.+..|.+...+.... .. .....+..++|++|++
T Consensus 31 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~ 99 (289)
T PRK13645 31 SLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFP 99 (289)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCc
Confidence 4678999999999999999999999999999988777754432110 01 1123344688999874
No 226
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=2.4e-13 Score=96.98 Aligned_cols=64 Identities=16% Similarity=0.218 Sum_probs=47.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH----HHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP----KLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++.|..|.+..++.......... ++.+++|++|++
T Consensus 48 sl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~ 115 (400)
T PRK10070 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSF 115 (400)
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCC
Confidence 5678999999999999999999999999999998887765432111111111 123588999874
No 227
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=7.6e-13 Score=88.76 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=45.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhh-ccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQK-YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~-~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||+|||||+++|+|+.++ ..+.+...+.... .......+..++|++|++
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~ 92 (249)
T PRK14253 23 NLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKP 92 (249)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCC
Confidence 467899999999999999999999999999875 3566554332111 111223445689999875
No 228
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.35 E-value=5.7e-13 Score=90.62 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=46.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccchhhh--hccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSELIQ--KYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++. +..|.+...+... ........+..++|++|++
T Consensus 44 sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 114 (271)
T PRK14238 44 NLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKP 114 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCC
Confidence 46789999999999999999999999999986 4667665443211 1111223455689999875
No 229
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.35 E-value=3.6e-13 Score=89.23 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=46.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC---ccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS---ATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+++ +..+.+...+... .....+++++|++|++
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~---~~~~~~~~i~~~~q~~ 90 (226)
T cd03234 27 SLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR---KPDQFQKCVAYVRQDD 90 (226)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC---ChHHhcccEEEeCCCC
Confidence 56789999999999999999999999999988 7777765543211 1123345688888874
No 230
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.35 E-value=5.5e-13 Score=98.58 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=51.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+||||||||||+++|+|+++|..|++..++...........+..++|++|++
T Consensus 335 ~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 398 (569)
T PRK10789 335 NFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTP 398 (569)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCC
Confidence 4568899999999999999999999999999999887765544333344455667799999985
No 231
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.35 E-value=4.9e-13 Score=90.32 Aligned_cols=64 Identities=14% Similarity=0.087 Sum_probs=46.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSELIQK--YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.. +..|.+...+.... .......+.+++|++|++
T Consensus 33 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 103 (260)
T PRK10744 33 NLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKP 103 (260)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCC
Confidence 46789999999999999999999999999975 35666654432111 111223345689999875
No 232
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=3.2e-13 Score=94.15 Aligned_cols=64 Identities=14% Similarity=0.056 Sum_probs=48.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++.+..|.+...+........ ...+.+++|++|++
T Consensus 35 sl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~ 101 (327)
T PRK11308 35 SFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNP 101 (327)
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCc
Confidence 57789999999999999999999999999998887777654321111111 12334689999986
No 233
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=5.4e-13 Score=90.64 Aligned_cols=64 Identities=19% Similarity=0.121 Sum_probs=45.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSELIQK--YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.+ +..|.+...+.... .......+.+++|++|++
T Consensus 33 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 103 (269)
T PRK14259 33 FCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQP 103 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCC
Confidence 46789999999999999999999999999976 45666654332111 111223445688999875
No 234
>KOG0058|consensus
Probab=99.35 E-value=7.8e-13 Score=98.56 Aligned_cols=67 Identities=21% Similarity=0.253 Sum_probs=59.0
Q ss_pred HHHh--cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 34 YYEE--MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 34 ~~~~--~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
.+++ |+++||+.++|+||||+||||++..|-+++.|+.|.|..++...+..+....++++++|-|+|
T Consensus 483 Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEP 551 (716)
T KOG0058|consen 483 VLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEP 551 (716)
T ss_pred hhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccc
Confidence 5554 568999999999999999999999999999999998887777667777778888999999987
No 235
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=6e-13 Score=89.29 Aligned_cols=64 Identities=19% Similarity=0.113 Sum_probs=46.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhhc--cCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQKY--LGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~~--~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+..+ ..|.+..++..... ......+.+++|++|++
T Consensus 23 ~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14262 23 TMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKP 93 (250)
T ss_pred eEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCC
Confidence 577899999999999999999999999998863 56666544321111 11123345689999875
No 236
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.34 E-value=3.8e-13 Score=85.58 Aligned_cols=40 Identities=33% Similarity=0.400 Sum_probs=36.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
++++.+|+.++|+||||||||||+++|+|++++..+++..
T Consensus 21 ~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60 (166)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 4678899999999999999999999999999988777754
No 237
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.34 E-value=2.5e-12 Score=90.65 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=57.2
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhh
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEV 99 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~ 99 (102)
.++.++.+++|+||||||||.++++|+..+...++.+++.++.+++.++++++.|..|..+.
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~ 204 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAA 204 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999988886553
No 238
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.34 E-value=3.4e-13 Score=91.71 Aligned_cols=61 Identities=20% Similarity=0.144 Sum_probs=45.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+++|..|++...+.... ....+.+++|++|++
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~---~~~~~~~i~~v~q~~ 87 (272)
T PRK15056 27 SFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR---QALQKNLVAYVPQSE 87 (272)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhH---HhhccceEEEecccc
Confidence 4678899999999999999999999999999998887754432111 111122478888764
No 239
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.34 E-value=5.7e-13 Score=89.55 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=45.7
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
.++.+.+|++++|+||||||||||+++|+|+.++ .|.+...+...........+..++|++|++
T Consensus 15 vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 78 (248)
T PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQ 78 (248)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecccC
Confidence 3577899999999999999999999999999854 676654432111112223344578988874
No 240
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=5.5e-13 Score=93.02 Aligned_cols=65 Identities=23% Similarity=0.208 Sum_probs=45.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC----ccEEEEccchhhhhccCchHH----HHHHccchhhhc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS----ATFLRVVGSELIQKYLGDGPK----LVRVALVPEVRN 101 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~----~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~q~~~ 101 (102)
++++.+|+.++|+||||||||||+++|+|+.+ ++.|.|...+.........+. +++++|++|++.
T Consensus 27 sl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 27 SMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 57789999999999999999999999999986 355666544321111111121 125889999863
No 241
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.34 E-value=5.6e-13 Score=98.02 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=51.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++++|+.++|+||||||||||+++|+|+++|..|.+..++...........+..++|++|++
T Consensus 338 ~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 401 (544)
T TIGR01842 338 SFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDV 401 (544)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCc
Confidence 4668899999999999999999999999999999887765544333334445667899999985
No 242
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.34 E-value=4.3e-13 Score=90.42 Aligned_cols=40 Identities=28% Similarity=0.401 Sum_probs=36.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
++.+.+|+.++|+||||||||||+++|+|+..|..|.+..
T Consensus 24 s~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~ 63 (251)
T PRK09544 24 SLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKR 63 (251)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 5778999999999999999999999999999988887754
No 243
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.34 E-value=6.4e-13 Score=87.10 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=45.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEV 99 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~ 99 (102)
++.+.+|+.++|+||||||||||+++|+|+..+..|.+...+.... ....+..++|++|+
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~---~~~~~~~~~~~~~~ 81 (207)
T PRK13539 22 SFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID---DPDVAEACHYLGHR 81 (207)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCc---chhhHhhcEEecCC
Confidence 5678999999999999999999999999999988887765432111 11134567787765
No 244
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.34 E-value=6.8e-13 Score=89.03 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=45.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQK--YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.++ ..|++...+.... .......+.+++|++|++
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14240 23 NLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQP 93 (250)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCC
Confidence 567889999999999999999999999998652 3566654432111 112223445689999875
No 245
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.33 E-value=6.8e-13 Score=99.97 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=54.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+||||||||||+++|+|++.|..|.|..++.........+.+..++|++|++
T Consensus 477 ~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~ 540 (694)
T TIGR01846 477 NLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQEN 540 (694)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCC
Confidence 4568899999999999999999999999999999888877665445556667777899999985
No 246
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.33 E-value=7e-13 Score=87.65 Aligned_cols=40 Identities=25% Similarity=0.357 Sum_probs=36.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
++++.+|+.++|+||||||||||+++|+|++++..|.+..
T Consensus 28 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 67 (224)
T TIGR02324 28 SLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILV 67 (224)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 5678999999999999999999999999999988777764
No 247
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1.2e-12 Score=88.34 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=45.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccch--hhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSE--LIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~--~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+..+ ..|.+...+ +..........+..++|++|++
T Consensus 32 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 102 (259)
T PRK14274 32 NLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKG 102 (259)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCC
Confidence 467889999999999999999999999999863 356654433 2110111223345689999875
No 248
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=8e-13 Score=85.76 Aligned_cols=60 Identities=18% Similarity=0.116 Sum_probs=44.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhh--CccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT--SATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+. ++..+++...+.... ...+.+++|++|++
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~~~i~~~~q~~ 88 (192)
T cd03232 27 SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQRSTGYVEQQD 88 (192)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhhhceEEecccC
Confidence 4678899999999999999999999999975 356676654432111 23345688888864
No 249
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.33 E-value=6.3e-13 Score=92.79 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=46.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc---EEEEccchhhhhccCchHH---H-HHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT---FLRVVGSELIQKYLGDGPK---L-VRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~---~~~i~~~~~~~~~~~~~~~---~-~~~~~~~q~~ 100 (102)
+|++.+|++++|+|+||||||||+++|+|++.+. .|.|...+.........+. + .+++|++|++
T Consensus 36 sl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~ 106 (330)
T PRK09473 36 NFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDP 106 (330)
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCc
Confidence 5778999999999999999999999999999874 6666544321111122221 1 2589999986
No 250
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=7.9e-13 Score=87.96 Aligned_cols=62 Identities=26% Similarity=0.218 Sum_probs=46.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||+|||||+++|+|++++..|.+...+...... ...+..++|++|++
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~ 81 (232)
T cd03300 20 SLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNL--PPHKRPVNTVFQNY 81 (232)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC--ChhhcceEEEeccc
Confidence 466889999999999999999999999999999887775543211111 12234678888874
No 251
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=6.6e-13 Score=87.26 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=47.3
Q ss_pred HHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc----CchHHHHHHccchhhh
Q psy16321 35 YEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL----GDGPKLVRVALVPEVR 100 (102)
Q Consensus 35 ~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~q~~ 100 (102)
..++++.+ +.++|+||||||||||+++|+|+++|..|.+...+...... .....+..++|++|++
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 84 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQY 84 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCC
Confidence 45678899 99999999999999999999999998877775443211100 1112345688998875
No 252
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.32 E-value=6.8e-13 Score=88.57 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=46.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+++|+|+..+..|++...+..... ....+..++|++|++
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~--~~~~~~~i~~~~q~~ 81 (237)
T TIGR00968 20 NLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATR--VHARDRKIGFVFQHY 81 (237)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCc--CChhhcCEEEEecCh
Confidence 46789999999999999999999999999998887877654321111 112344688888875
No 253
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.32 E-value=4.7e-13 Score=90.16 Aligned_cols=62 Identities=19% Similarity=0.143 Sum_probs=45.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc----cEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA----TFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.++ ..|++...+.... .....+..++|++|++
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~--~~~~~~~~i~~v~q~~ 88 (254)
T PRK10418 23 SLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVA--PCALRGRKIATIMQNP 88 (254)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecc--ccccccceEEEEecCC
Confidence 567899999999999999999999999999988 6676654432111 1111224588888875
No 254
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=7.9e-13 Score=89.66 Aligned_cols=64 Identities=14% Similarity=0.206 Sum_probs=44.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccch--hhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSE--LIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.. +..|.+...+ +..........+.+++|++|++
T Consensus 41 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 111 (268)
T PRK14248 41 SMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP 111 (268)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCC
Confidence 46788999999999999999999999999764 4566665433 2111111123345688998875
No 255
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.32 E-value=8.4e-13 Score=89.05 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=45.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQK--YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+..+ ..|.|...+.... .......+..++|++|++
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (258)
T PRK14241 24 NLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRP 94 (258)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccc
Confidence 467889999999999999999999999999864 4676655432111 111223345688998874
No 256
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.32 E-value=6.6e-13 Score=97.01 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=46.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+++|+|+..|..|.+...+.......... .+.+++|++|++
T Consensus 25 s~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~ 89 (510)
T PRK09700 25 NLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQEL 89 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecc
Confidence 5678999999999999999999999999999988787765432111111111 223588999874
No 257
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=7.2e-13 Score=89.45 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=36.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
++.+.+|+.++|+||||||||||+++|+|+.+|..|.+...
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 61 (255)
T PRK11248 21 NLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD 61 (255)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 56789999999999999999999999999999887777543
No 258
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=7.6e-13 Score=92.24 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=45.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc----cEEEEccchhhhhccCchHHH----HHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA----TFLRVVGSELIQKYLGDGPKL----VRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~----~~~~i~~~~~~~~~~~~~~~~----~~~~~~~q~~ 100 (102)
+|++.+|++++|+||||||||||+++|+|++.+ +.|.+...+.........+.+ ..++|++|++
T Consensus 27 sl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~ 98 (326)
T PRK11022 27 SYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDP 98 (326)
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 577899999999999999999999999999863 456555443211111111211 2489999985
No 259
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=1.7e-12 Score=87.15 Aligned_cols=64 Identities=13% Similarity=0.080 Sum_probs=45.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccchhhhhcc--CchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSELIQKYL--GDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.. +..|++...+...... .....+.+++|++|++
T Consensus 25 s~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 95 (251)
T PRK14244 25 NLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKP 95 (251)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCc
Confidence 46788999999999999999999999999975 3467665443211111 1123355789999875
No 260
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=9.2e-13 Score=88.44 Aligned_cols=64 Identities=20% Similarity=0.179 Sum_probs=45.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc-----EEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT-----FLRVVGSELIQK--YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~-----~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||+|||||+++|+|++.+. .+.+...+.... .......+.+++|++|++
T Consensus 24 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (252)
T PRK14272 24 NLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKP 94 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccC
Confidence 4668899999999999999999999999998753 566654332111 011123345688999875
No 261
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.32 E-value=1.1e-12 Score=88.63 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=45.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc---EEEEccchhhhhcc-----CchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT---FLRVVGSELIQKYL-----GDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~---~~~i~~~~~~~~~~-----~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|++.|. .|.+...+...... .....+.+++|++|++
T Consensus 24 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 24 DLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence 5678899999999999999999999999998764 36655433211111 1123345689999875
No 262
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=8.2e-13 Score=88.08 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=46.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|++++..|.+...+..... ....+.+++|++|++
T Consensus 19 s~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~--~~~~~~~i~~~~q~~ 80 (235)
T cd03299 19 SLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITN--LPPEKRDISYVPQNY 80 (235)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCc--CChhHcCEEEEeecC
Confidence 46788999999999999999999999999999988877654321111 112345688888864
No 263
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.32 E-value=5.5e-13 Score=97.27 Aligned_cols=64 Identities=13% Similarity=0.195 Sum_probs=46.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++.|+.|++...+.......... .+.+++|++|++
T Consensus 24 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 88 (501)
T PRK10762 24 ALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQEL 88 (501)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcch
Confidence 5678899999999999999999999999999998887765432111111111 223578998874
No 264
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=1e-12 Score=82.70 Aligned_cols=62 Identities=26% Similarity=0.264 Sum_probs=44.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPE 98 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q 98 (102)
++.+.+|+.++|+||||+|||||+++|+|++++..+.+...+.........+.+..++|++|
T Consensus 19 ~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 80 (157)
T cd00267 19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80 (157)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence 56788999999999999999999999999999887777655431111111223345666665
No 265
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.1e-12 Score=88.49 Aligned_cols=64 Identities=17% Similarity=0.049 Sum_probs=45.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhhcc--CchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQKYL--GDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~~~--~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.++ ..|++...+...... .....+..++|++|++
T Consensus 32 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 102 (258)
T PRK14268 32 SMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKP 102 (258)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCC
Confidence 467899999999999999999999999999864 567665443211111 1123345689999875
No 266
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.3e-12 Score=87.74 Aligned_cols=64 Identities=14% Similarity=0.155 Sum_probs=45.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC--c---cEEEEccchhhhhc--cCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS--A---TFLRVVGSELIQKY--LGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~--~---~~~~i~~~~~~~~~--~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.+ + ..+++......... ......+.+++|++|++
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (252)
T PRK14256 24 SMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKP 94 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCC
Confidence 46789999999999999999999999999975 3 35666544321111 11123345688999874
No 267
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.31 E-value=1e-12 Score=85.38 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=37.9
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~ 78 (102)
.++++.+|+.++|+||||||||||+++|+|+.++..|.+...+
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 61 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKN 61 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 3577899999999999999999999999999999888776543
No 268
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.3e-12 Score=89.06 Aligned_cols=64 Identities=19% Similarity=0.114 Sum_probs=46.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhhcc-CchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQKYL-GDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~~~-~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||+|||||+++|+|+.++ ..+.+.......... .....+.+++|++|++
T Consensus 41 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~ 110 (276)
T PRK14271 41 SMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRP 110 (276)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCC
Confidence 467889999999999999999999999999875 466665543211111 1123455789999875
No 269
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.3e-12 Score=88.51 Aligned_cols=64 Identities=13% Similarity=-0.003 Sum_probs=46.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQK--YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||+|||||+++|+|++.| ..|++...+.... .......+.+++|++|++
T Consensus 28 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 28 HVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 567899999999999999999999999999875 4666654432111 111223445689999875
No 270
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.30 E-value=1.7e-12 Score=88.04 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=45.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQK--YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++.+ ..|++..++.... .......+..++|++|++
T Consensus 40 sl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 110 (267)
T PRK14237 40 DMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRP 110 (267)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCC
Confidence 467899999999999999999999999999863 5666654432111 111223355689999874
No 271
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.30 E-value=1.2e-12 Score=96.58 Aligned_cols=64 Identities=14% Similarity=0.003 Sum_probs=52.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+||||||||||+++|+|+++|+.|.+..++.........+.+..+++++|++
T Consensus 362 s~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 425 (555)
T TIGR01194 362 DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADF 425 (555)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccCh
Confidence 4668899999999999999999999999999999888876654333444455667789999975
No 272
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.30 E-value=1.2e-12 Score=97.18 Aligned_cols=64 Identities=19% Similarity=0.174 Sum_probs=51.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+||||||||||+++|+|+++|..|++..++...........+..++|++|++
T Consensus 355 ~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 418 (585)
T TIGR01192 355 SFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDA 418 (585)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCC
Confidence 4668899999999999999999999999999999887765544333344445667799999985
No 273
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=1.8e-12 Score=87.07 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=45.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSELIQK--YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.. +..|++...+.... .......+..++|++|++
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (251)
T PRK14251 24 SLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQP 94 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCC
Confidence 56789999999999999999999999999986 24666654432111 111123345688888874
No 274
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.30 E-value=1.1e-12 Score=86.63 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=45.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||+|||||+++|+|++++..|.+...+.... ... .+.++|++|++
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~---~~~-~~~~~~~~q~~ 79 (223)
T TIGR03740 20 SLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWT---RKD-LHKIGSLIESP 79 (223)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecc---ccc-cccEEEEcCCC
Confidence 4678899999999999999999999999999988887765432111 111 23577887764
No 275
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=1.2e-12 Score=88.03 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=44.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhhcc--CchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQKYL--GDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~~~--~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+..+ ..|++...+...... .....+..++|++|++
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 96 (253)
T PRK14261 26 TISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRP 96 (253)
T ss_pred EEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCC
Confidence 467899999999999999999999999998652 256665443211111 1223345688998875
No 276
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.30 E-value=1.1e-12 Score=96.05 Aligned_cols=64 Identities=19% Similarity=0.159 Sum_probs=46.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|++.|..|.+...+.......... .+..++|++|++
T Consensus 31 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 95 (510)
T PRK15439 31 DFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEP 95 (510)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccC
Confidence 4678899999999999999999999999999998887765432111111111 123478999875
No 277
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.30 E-value=9.2e-13 Score=93.52 Aligned_cols=64 Identities=20% Similarity=0.166 Sum_probs=47.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh----hhhccCchH---H-HHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL----IQKYLGDGP---K-LVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~----~~~~~~~~~---~-~~~~~~~~q~~ 100 (102)
+|++.+|+.++|+||||||||||+++|+|++.|+.|++...+. ........+ . +.+++|++|++
T Consensus 44 sf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 44 SLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 4678999999999999999999999999999998887765431 111111111 1 13589999975
No 278
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.30 E-value=2.9e-12 Score=86.85 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=45.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccch--hhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSE--LIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~--~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+..+ ..|.+...+ +........+.+.+++|++|++
T Consensus 30 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 100 (264)
T PRK14243 30 WLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKP 100 (264)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCC
Confidence 567899999999999999999999999998752 456665433 2111111223455689999874
No 279
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.29 E-value=8.8e-14 Score=90.74 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=52.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC-chHHHHHHccchhhhc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG-DGPKLVRVALVPEVRN 101 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~q~~~ 101 (102)
++++.+|++++|.||||+||||.+.++.|+..++.+.+..++......+ ...++..++|++|++.
T Consensus 24 sl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~S 89 (243)
T COG1137 24 SLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEAS 89 (243)
T ss_pred eEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccch
Confidence 5778999999999999999999999999999999888876654333333 3445567999999863
No 280
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.29 E-value=1.6e-12 Score=86.52 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=36.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
++.+.+|+.++|+||||||||||+++|+|+.++..|++...
T Consensus 5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 45 (230)
T TIGR01184 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILE 45 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 57788999999999999999999999999999887777544
No 281
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.29 E-value=1.8e-12 Score=83.13 Aligned_cols=64 Identities=22% Similarity=0.217 Sum_probs=48.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc-hH---HHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD-GP---KLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~-~~---~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+-.++|+..++.+++..........++ .. +..+++||||..
T Consensus 30 ~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF 97 (228)
T COG4181 30 ELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSF 97 (228)
T ss_pred eEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEee
Confidence 46789999999999999999999999999999998877654332222222 12 234699999974
No 282
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=2.6e-12 Score=87.51 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=45.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccch--hhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSE--LIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~--~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+..+ ..|.+...+ +..........+.+++|++|++
T Consensus 40 s~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~ 110 (274)
T PRK14265 40 HLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRP 110 (274)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCC
Confidence 467899999999999999999999999998753 356555433 2111111223345788999874
No 283
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=1.8e-12 Score=88.84 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=45.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccchhhhh-c-cCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSELIQK-Y-LGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~~~~~-~-~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|++++|+||||||||||+++|+|+.. +..|.+..++.... . ......+.+++|++|++
T Consensus 59 sl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 129 (286)
T PRK14275 59 NADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129 (286)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCC
Confidence 46789999999999999999999999999754 36676655432111 1 11123345689999875
No 284
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.29 E-value=1.2e-12 Score=87.84 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=35.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhh--hCccEEEEccc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQ--TSATFLRVVGS 77 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~--~~~~~~~i~~~ 77 (102)
++++.+|+.++|+||||||||||+++|+|+ +++..|.+...
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~ 69 (252)
T CHL00131 27 NLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFK 69 (252)
T ss_pred eeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEEC
Confidence 477899999999999999999999999997 45666766544
No 285
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.29 E-value=1.7e-12 Score=86.87 Aligned_cols=64 Identities=17% Similarity=0.151 Sum_probs=44.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhh--CccEEEEccchhhhhccCchHH-HHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT--SATFLRVVGSELIQKYLGDGPK-LVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~--~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+. ++..|++...+........... +..++|++|++
T Consensus 21 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 87 (248)
T PRK09580 21 NLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYP 87 (248)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCc
Confidence 4678899999999999999999999999994 5777777554321111111112 23477887764
No 286
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=2.2e-12 Score=86.60 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=45.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC--c---cEEEEccchhhhhc--cCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS--A---TFLRVVGSELIQKY--LGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~--~---~~~~i~~~~~~~~~--~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||+|||||+++|+|+.. + ..|++...+..... ......+.+++|++|++
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14266 23 NLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKP 93 (250)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCC
Confidence 46788999999999999999999999999864 2 45666544321111 11223456789999875
No 287
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=1.6e-12 Score=89.06 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=45.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccchhhhhc--cCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSELIQKY--LGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|++. +..|.+...+..... ......+.+++|++|++
T Consensus 59 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~ 129 (285)
T PRK14254 59 SMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKP 129 (285)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 46789999999999999999999999999986 456766544321111 11123345688999875
No 288
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=1.8e-12 Score=87.57 Aligned_cols=64 Identities=16% Similarity=0.061 Sum_probs=45.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch------hhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE------LIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||+|||||+++|+|+..+..+++...+ ...........+..++|++|++
T Consensus 30 s~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~ 99 (257)
T PRK14246 30 TIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQP 99 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCC
Confidence 466889999999999999999999999999988765543221 1001111223345688998875
No 289
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.28 E-value=2.7e-12 Score=86.15 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=44.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC--c---cEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS--A---TFLRVVGSELIQK--YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~--~---~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.. | ..|.+...+.... .......+..++|++|++
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 95 (252)
T PRK14239 25 SLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQP 95 (252)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCC
Confidence 46788999999999999999999999999843 4 2566654432111 111123345689999875
No 290
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.28 E-value=1.9e-12 Score=93.69 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=54.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
+|.+.+|+.++|+||||||||||+|+|.|.-.|..+.+..+.-..+.+.....-++++|.+|+-
T Consensus 356 sF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdV 419 (580)
T COG4618 356 SFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDV 419 (580)
T ss_pred eeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccc
Confidence 4678899999999999999999999999999999888776655445566666778899999973
No 291
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.28 E-value=1.6e-11 Score=83.10 Aligned_cols=84 Identities=26% Similarity=0.376 Sum_probs=58.1
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCC---CCceeEEECCCCCChhHHHHHHHhhhC-------ccEEEE
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIK---PPKGVILYGPPGTGKTLLAKAVANQTS-------ATFLRV 74 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~---~~~~~~l~Gp~GsGKStl~~~i~~~~~-------~~~~~i 74 (102)
++.+++++|++++++.|++.+.+...... ....++. ....++|+|||||||||++++++..+. .....+
T Consensus 2 ~~~l~~~~Gl~~vk~~i~~~~~~~~~~~~-~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~ 80 (261)
T TIGR02881 2 ERELSRMVGLDEVKALIKEIYAWIQINEK-RKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEV 80 (261)
T ss_pred hHHHHHhcChHHHHHHHHHHHHHHHHHHH-HHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEe
Confidence 35789999999999999999877654322 2223332 234688999999999999999998642 134455
Q ss_pred ccchhhhhccCchHH
Q psy16321 75 VGSELIQKYLGDGPK 89 (102)
Q Consensus 75 ~~~~~~~~~~~~~~~ 89 (102)
...++...+.++...
T Consensus 81 ~~~~l~~~~~g~~~~ 95 (261)
T TIGR02881 81 ERADLVGEYIGHTAQ 95 (261)
T ss_pred cHHHhhhhhccchHH
Confidence 555565555555443
No 292
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=3.6e-12 Score=85.60 Aligned_cols=64 Identities=17% Similarity=0.090 Sum_probs=44.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhh---Cc--cEEEEccchhhhh-c-cCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT---SA--TFLRVVGSELIQK-Y-LGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~---~~--~~~~i~~~~~~~~-~-~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+. ++ ..|++...+.... . ......+..++|++|++
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 93 (250)
T PRK14245 23 SMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRP 93 (250)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCC
Confidence 5678999999999999999999999999973 33 3566654432111 1 11223445689999874
No 293
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.28 E-value=1.2e-12 Score=81.57 Aligned_cols=41 Identities=27% Similarity=0.297 Sum_probs=37.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
++.+.+|+.++|.||||+|||||+++|+|+.++..+++..+
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~ 60 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEEC
Confidence 46789999999999999999999999999999988877654
No 294
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.28 E-value=1.4e-12 Score=95.13 Aligned_cols=64 Identities=16% Similarity=0.028 Sum_probs=47.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc-hHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD-GPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.+|+.|.|...+........ ...+.+++|++|++
T Consensus 272 sl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~ 336 (501)
T PRK10762 272 SFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDR 336 (501)
T ss_pred eEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCcc
Confidence 56788999999999999999999999999999988887654321111111 12234589999974
No 295
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.28 E-value=1.3e-12 Score=95.47 Aligned_cols=63 Identities=11% Similarity=-0.026 Sum_probs=46.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc-hHHHHHHccchhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD-GPKLVRVALVPEV 99 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~q~ 99 (102)
++.+.+|++++|+||||||||||+++|+|+.+|..|.|...+........ ...+.+++|++|+
T Consensus 283 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~ 346 (510)
T PRK09700 283 SFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITES 346 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCc
Confidence 46689999999999999999999999999999888877654321111111 1223458999986
No 296
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=2.2e-12 Score=86.63 Aligned_cols=64 Identities=14% Similarity=0.068 Sum_probs=44.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC--c---cEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS--A---TFLRVVGSELIQK--YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~--~---~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.+ + ..|+|...+.... .......+.+++|++|++
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 95 (252)
T PRK14255 25 DLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQP 95 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCC
Confidence 46788999999999999999999999999864 3 2566554332111 111122334688998874
No 297
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.28 E-value=2.1e-12 Score=94.39 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=49.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhh--hhccCchHHHHHHccchhhhc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI--QKYLGDGPKLVRVALVPEVRN 101 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~q~~~ 101 (102)
+|++.+|++++|+|+|||||||++|+|+|+..|+.+.+...+.. .........++++-++||++.
T Consensus 311 Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~ 377 (539)
T COG1123 311 SFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPY 377 (539)
T ss_pred eeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcc
Confidence 57789999999999999999999999999999987766554321 121112334567888999863
No 298
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.28 E-value=1.3e-12 Score=95.02 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=46.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc-hHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD-GPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.+|..|.+...+........ ...+.+++|++|++
T Consensus 18 s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 82 (491)
T PRK10982 18 NLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQEL 82 (491)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccc
Confidence 56788999999999999999999999999999988877644321111111 12234588998874
No 299
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=3.7e-12 Score=86.03 Aligned_cols=64 Identities=17% Similarity=0.065 Sum_probs=45.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQK--YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.++ ..|.+...+.... .......+..++|++|++
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 97 (259)
T PRK14260 27 SMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRP 97 (259)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccc
Confidence 467899999999999999999999999999874 2566654432111 111223445789999875
No 300
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.27 E-value=1.5e-12 Score=97.34 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=47.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch---HHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG---PKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~q~~ 100 (102)
+|.+.+|++++|+||||||||||+++|+|+.+++.|.|...+......... ..+.+++|++|++
T Consensus 344 s~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~ 410 (623)
T PRK10261 344 SFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDP 410 (623)
T ss_pred EeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCc
Confidence 567889999999999999999999999999998888776543211111111 1234689999985
No 301
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.27 E-value=4.5e-13 Score=89.27 Aligned_cols=65 Identities=18% Similarity=0.133 Sum_probs=48.4
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh-ccCchHHHHHHccchhhh
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK-YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~q~~ 100 (102)
.++++.+|++++|+||||+||||++++|.|.++|+.+.+........ .......+..++-.||..
T Consensus 23 Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~ 88 (250)
T COG0411 23 VSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQIT 88 (250)
T ss_pred eeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccc
Confidence 35788999999999999999999999999999999888776543222 222233344566677754
No 302
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.27 E-value=3.4e-12 Score=86.81 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=45.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccch--hhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSE--LIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~--~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+..+ ..|++...+ +..........+..++|++|++
T Consensus 45 s~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~ 115 (272)
T PRK14236 45 SMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRP 115 (272)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCC
Confidence 467899999999999999999999999999763 566665433 2111111123345688998874
No 303
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=1.8e-12 Score=94.66 Aligned_cols=64 Identities=14% Similarity=0.098 Sum_probs=45.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc--cEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA--TFLRVVGSELIQKYLGDGP-KLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~--~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.++ ..|.+...+.......... .+..++|++|++
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 91 (506)
T PRK13549 25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQEL 91 (506)
T ss_pred eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEecc
Confidence 567889999999999999999999999999886 5677654432111111111 234588999874
No 304
>CHL00181 cbbX CbbX; Provisional
Probab=99.26 E-value=1.8e-11 Score=84.09 Aligned_cols=80 Identities=25% Similarity=0.370 Sum_probs=58.2
Q ss_pred cccCChHHHHHHHHHHhhhhcCChHHHHhcCCCC---CceeEEECCCCCChhHHHHHHHhhhC-------ccEEEEccch
Q psy16321 9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKP---PKGVILYGPPGTGKTLLAKAVANQTS-------ATFLRVVGSE 78 (102)
Q Consensus 9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~l~Gp~GsGKStl~~~i~~~~~-------~~~~~i~~~~ 78 (102)
++++|+++++++|++.+.+.. ........++.+ +-.++|+|||||||||++++++..+. .+...+...+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~-~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLL-IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 379999999999999887633 344555555533 44589999999999999999988652 2356666666
Q ss_pred hhhhccCchHH
Q psy16321 79 LIQKYLGDGPK 89 (102)
Q Consensus 79 ~~~~~~~~~~~ 89 (102)
+...+.++++.
T Consensus 102 l~~~~~g~~~~ 112 (287)
T CHL00181 102 LVGQYIGHTAP 112 (287)
T ss_pred HHHHHhccchH
Confidence 66666665543
No 305
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.26 E-value=3e-12 Score=86.14 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=34.2
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
+.+.+|+.++|+||||||||||+++|+|+.+|..|.+..
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~ 58 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI 58 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEE
Confidence 346689999999999999999999999999988777654
No 306
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=3.2e-12 Score=88.34 Aligned_cols=64 Identities=19% Similarity=0.092 Sum_probs=45.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccchhhhhc--cCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSELIQKY--LGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|++. +..|.+...+..... ......+.+++|++|++
T Consensus 65 s~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~ 135 (305)
T PRK14264 65 SMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSP 135 (305)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCC
Confidence 46788999999999999999999999999975 456666544321111 11223345689999875
No 307
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=3.6e-12 Score=86.34 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=44.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccc--hhhh--hccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGS--ELIQ--KYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~--~~~~--~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+..+ ..+++... ++.. ........+.+++|++|++
T Consensus 36 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 108 (265)
T PRK14252 36 NMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKP 108 (265)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCC
Confidence 466889999999999999999999999999864 45555433 2210 0111123345688998874
No 308
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.26 E-value=2.7e-11 Score=83.14 Aligned_cols=82 Identities=26% Similarity=0.393 Sum_probs=59.8
Q ss_pred ccc-ccCChHHHHHHHHHHhhhhcCChHHHHhcCCC---CCceeEEECCCCCChhHHHHHHHhhhCc-------cEEEEc
Q psy16321 7 ALK-KRGSLDVQIQEIKESVELPLTHPEYYEEMGIK---PPKGVILYGPPGTGKTLLAKAVANQTSA-------TFLRVV 75 (102)
Q Consensus 7 ~~~-~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~---~~~~~~l~Gp~GsGKStl~~~i~~~~~~-------~~~~i~ 75 (102)
..+ +++|+++++++|++.+.+ ...++.....++. ++..++|+|||||||||++++++..+.. .+..+.
T Consensus 19 ~l~~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 19 QLDRELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred HHHHhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 445 699999999999998887 4455566666655 3457999999999999999999887632 355666
Q ss_pred cchhhhhccCchHH
Q psy16321 76 GSELIQKYLGDGPK 89 (102)
Q Consensus 76 ~~~~~~~~~~~~~~ 89 (102)
..++...+.+.++.
T Consensus 98 ~~~l~~~~~g~~~~ 111 (284)
T TIGR02880 98 RDDLVGQYIGHTAP 111 (284)
T ss_pred HHHHhHhhcccchH
Confidence 65665555555443
No 309
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.26 E-value=2.5e-12 Score=93.72 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=45.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc--cEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA--TFLRVVGSELIQKYLGDGP-KLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~--~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+++|+|+.++ ..|.+...+.......... .+.+++|++|++
T Consensus 21 sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 87 (500)
T TIGR02633 21 DLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQEL 87 (500)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeecc
Confidence 567899999999999999999999999999876 5677654432111111111 233588999875
No 310
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.25 E-value=2.1e-12 Score=88.53 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=35.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
++.+.+|+.++|+||||||||||+++|+|+++|..|.+..
T Consensus 57 s~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i 96 (282)
T cd03291 57 NLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKH 96 (282)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 4668999999999999999999999999999888776654
No 311
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.25 E-value=4.1e-12 Score=82.98 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=37.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 79 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~ 79 (102)
++++.+|+.+.+.||||||||||++.+||+..|..+.+..++.
T Consensus 25 sL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r 67 (259)
T COG4525 25 SLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR 67 (259)
T ss_pred ceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCE
Confidence 4668899999999999999999999999999999877765544
No 312
>KOG0055|consensus
Probab=99.25 E-value=4.6e-12 Score=98.92 Aligned_cols=64 Identities=23% Similarity=0.193 Sum_probs=56.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+|||||||||+++.|.++++|..|+|..++...+.......+.+++.|+|+|
T Consensus 373 sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QeP 436 (1228)
T KOG0055|consen 373 SLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEP 436 (1228)
T ss_pred EEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeech
Confidence 4678999999999999999999999999999999888877666556677778888999999997
No 313
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.25 E-value=1.7e-12 Score=94.70 Aligned_cols=64 Identities=14% Similarity=0.155 Sum_probs=47.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC-chHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG-DGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+++|..|.+...+....... ....+.+++|++|++
T Consensus 24 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~ 88 (501)
T PRK11288 24 SFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQEL 88 (501)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEech
Confidence 4678999999999999999999999999999988777765432111111 112234588998874
No 314
>PLN03232 ABC transporter C family member; Provisional
Probab=99.25 E-value=3.3e-12 Score=102.69 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=55.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+||+|||||||+++|.|++.|..|+|..++......+....|.++++++|++
T Consensus 1256 sl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp 1319 (1495)
T PLN03232 1256 SFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSP 1319 (1495)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCC
Confidence 3568899999999999999999999999999999888877665556666777888999999986
No 315
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.25 E-value=2.9e-12 Score=94.04 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=45.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhhccCchH---HH-HHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQKYLGDGP---KL-VRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~~~~~~~---~~-~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|++++ ..|.+...+.........+ .+ .+++|++|++
T Consensus 29 sl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 29 SLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 467889999999999999999999999999876 4676654332111111111 11 3589999975
No 316
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.25 E-value=4.7e-12 Score=101.62 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=51.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc-hhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS-ELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+||||||||||+++|+|+++|..|.|... +...........+..++|++|++
T Consensus 405 sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~ 469 (1466)
T PTZ00265 405 NFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDP 469 (1466)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccc
Confidence 46689999999999999999999999999999998888763 22223334445567799999985
No 317
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=7.3e-12 Score=91.09 Aligned_cols=74 Identities=12% Similarity=0.156 Sum_probs=58.4
Q ss_pred hhcCChHHHHh--cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 27 LPLTHPEYYEE--MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 27 ~~~~~~~~~~~--~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
|+-..+..+.+ +.+.+|+.++|+|+|||||||+++.++|.++++.|++..++.......+...+..+.++.|..
T Consensus 346 y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~ 421 (573)
T COG4987 346 YPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRV 421 (573)
T ss_pred cCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccch
Confidence 33344345554 568899999999999999999999999999999999987776555566666677788888864
No 318
>KOG0057|consensus
Probab=99.25 E-value=4.1e-12 Score=92.53 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=52.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
+++++.|+.++|+|+|||||||++|+|-++++ ..|+|..+.+..+.......|+.+++|||+.
T Consensus 372 sf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~ 434 (591)
T KOG0057|consen 372 SFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDS 434 (591)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcc
Confidence 57799999999999999999999999999998 6566555544446666667778899999985
No 319
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=5.9e-12 Score=85.14 Aligned_cols=64 Identities=20% Similarity=0.196 Sum_probs=44.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc-----EEEEccc--hhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT-----FLRVVGS--ELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~-----~~~i~~~--~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.++. .+.+... ++..........+..++|++|++
T Consensus 27 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 97 (261)
T PRK14258 27 SMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKP 97 (261)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCC
Confidence 4778999999999999999999999999998864 3444332 22111111123345688888874
No 320
>KOG0741|consensus
Probab=99.24 E-value=3.1e-11 Score=88.13 Aligned_cols=90 Identities=36% Similarity=0.620 Sum_probs=75.9
Q ss_pred ccCChHHHHHH-HHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEE-EEccchhhhhccCch
Q psy16321 10 KRGSLDVQIQE-IKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFL-RVVGSELIQKYLGDG 87 (102)
Q Consensus 10 ~i~g~~~~~~~-i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~-~i~~~~~~~~~~~~~ 87 (102)
-||||+..... .++++......|+..+.+++..-++++|+||||||||.++|.|..+++...- -+++.++.++|++++
T Consensus 222 GIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeS 301 (744)
T KOG0741|consen 222 GIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGES 301 (744)
T ss_pred ccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhccc
Confidence 37899877766 4667777788899999999999999999999999999999999999876533 367889999999999
Q ss_pred HHHHHHccchhh
Q psy16321 88 PKLVRVALVPEV 99 (102)
Q Consensus 88 ~~~~~~~~~~q~ 99 (102)
|.+.|-.|.-++
T Consensus 302 E~NvR~LFaDAE 313 (744)
T KOG0741|consen 302 EENVRKLFADAE 313 (744)
T ss_pred HHHHHHHHHhHH
Confidence 999887775543
No 321
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.24 E-value=8.9e-12 Score=81.44 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=50.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEV 99 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~ 99 (102)
++++++|+...|+||||+|||||+..++++.+.+.|++.............+..+++....|+
T Consensus 21 sl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~ 83 (252)
T COG4604 21 SLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQE 83 (252)
T ss_pred eeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhh
Confidence 467899999999999999999999999999999988877665544444555666666666665
No 322
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.23 E-value=2.9e-12 Score=93.74 Aligned_cols=64 Identities=20% Similarity=0.171 Sum_probs=46.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch-HHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG-PKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~q~~ 100 (102)
++.+.+|++++|+||||||||||+++|+|+.+|..|.+...+......... ..+.+++|++|++
T Consensus 283 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~ 347 (510)
T PRK15439 283 SLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDR 347 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCCh
Confidence 466889999999999999999999999999998888776543211111111 1233588998863
No 323
>PLN03130 ABC transporter C family member; Provisional
Probab=99.23 E-value=4.2e-12 Score=102.63 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=56.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+|++|||||||+++|.+++.+..|.|..++......+....|.++++++|++
T Consensus 1259 s~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp 1322 (1622)
T PLN03130 1259 SFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAP 1322 (1622)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCC
Confidence 4668999999999999999999999999999999888877766556667778888999999996
No 324
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=6.1e-12 Score=87.85 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=46.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSELIQK--YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.. +..|.+...+.... .......+.+++|++|++
T Consensus 102 s~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 102 NLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172 (329)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 46789999999999999999999999999975 34566554332211 112234456799999985
No 325
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.23 E-value=2.6e-12 Score=94.83 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=36.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
+|.+.+|+.++|+||||||||||+++|+|++.|..|.+..
T Consensus 27 s~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~ 66 (556)
T PRK11819 27 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARP 66 (556)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 4678999999999999999999999999999988777754
No 326
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.22 E-value=6.8e-12 Score=84.13 Aligned_cols=60 Identities=22% Similarity=0.210 Sum_probs=48.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
+|.+++|++++++||||+||||++|+|.+++.++.++|...+-.. ..+.+.+++|.|.++
T Consensus 22 sf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~----~~~~~~rIGyLPEER 81 (300)
T COG4152 22 SFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPL----SQEIKNRIGYLPEER 81 (300)
T ss_pred eeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcch----hhhhhhhcccChhhh
Confidence 577899999999999999999999999999999988876543211 224456789988764
No 327
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.22 E-value=2.7e-12 Score=93.68 Aligned_cols=64 Identities=22% Similarity=0.192 Sum_probs=46.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC-chHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG-DGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.+|..|.+...+....... ....+.+++|++|++
T Consensus 273 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 337 (501)
T PRK11288 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDR 337 (501)
T ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCH
Confidence 4668899999999999999999999999999988887765432111111 112234588888875
No 328
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.22 E-value=7.4e-12 Score=80.63 Aligned_cols=41 Identities=27% Similarity=0.143 Sum_probs=36.7
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~ 78 (102)
+.+.+|+.++|+||||||||||+++|+|+..|+.+++...+
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 60 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG 60 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC
Confidence 57789999999999999999999999999999888776543
No 329
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=4.4e-12 Score=92.69 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=46.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-cEEEEccchhhhhccCc-hHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-TFLRVVGSELIQKYLGD-GPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-~~~~i~~~~~~~~~~~~-~~~~~~~~~~~q~~ 100 (102)
++.+.+|++++|+||||||||||+++|+|+.++ ..|.|...+........ ...+..++|++|++
T Consensus 282 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 347 (506)
T PRK13549 282 SFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDR 347 (506)
T ss_pred eeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcch
Confidence 567899999999999999999999999999884 77777654321111111 12233588999874
No 330
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.22 E-value=4.2e-12 Score=92.58 Aligned_cols=64 Identities=19% Similarity=0.122 Sum_probs=45.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-cEEEEccchhhhhccCc-hHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-TFLRVVGSELIQKYLGD-GPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-~~~~i~~~~~~~~~~~~-~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.+| ..|.+...+........ ...+.+++|++|++
T Consensus 280 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 345 (500)
T TIGR02633 280 SFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDR 345 (500)
T ss_pred eeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcch
Confidence 466889999999999999999999999999985 57777654321111111 12234588999874
No 331
>PTZ00243 ABC transporter; Provisional
Probab=99.22 E-value=6e-12 Score=101.47 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=55.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+|++|||||||+++|.+++.+..|.|..++......+..+.+.++++++|++
T Consensus 1330 sf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp 1393 (1560)
T PTZ00243 1330 SFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDP 1393 (1560)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCC
Confidence 4668899999999999999999999999999999888876665555566777888999999986
No 332
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.21 E-value=5.5e-12 Score=92.60 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=45.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch---HHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG---PKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+++ ..|.|...+......... ..+.+++|++|++
T Consensus 306 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~ 371 (529)
T PRK15134 306 SFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDP 371 (529)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCc
Confidence 56788999999999999999999999999985 667765443211111111 1234689999975
No 333
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.21 E-value=8.7e-12 Score=91.36 Aligned_cols=64 Identities=22% Similarity=0.198 Sum_probs=46.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc-h--h--hhhcc--CchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS-E--L--IQKYL--GDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~-~--~--~~~~~--~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|++++|+||||||||||+++|+|+.+|..|.+... + . ..... .....+.+++|++|++
T Consensus 304 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 374 (520)
T TIGR03269 304 SLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEY 374 (520)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCc
Confidence 46689999999999999999999999999999888887652 1 1 01110 0112244689999974
No 334
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.21 E-value=7.8e-12 Score=100.37 Aligned_cols=64 Identities=9% Similarity=0.023 Sum_probs=52.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----------------------------------------------
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA----------------------------------------------- 69 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~----------------------------------------------- 69 (102)
++.+++|+.++|+|||||||||++++|.|+++|
T Consensus 1188 sl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1267 (1466)
T PTZ00265 1188 TFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSG 1267 (1466)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 466899999999999999999999999999998
Q ss_pred -------cEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 70 -------TFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 70 -------~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
..|.|..++...........+..++||+|++
T Consensus 1268 ~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep 1305 (1466)
T PTZ00265 1268 EDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEP 1305 (1466)
T ss_pred cccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCC
Confidence 3556655544445556667778899999986
No 335
>KOG0743|consensus
Probab=99.21 E-value=3.6e-11 Score=85.98 Aligned_cols=73 Identities=23% Similarity=0.378 Sum_probs=66.1
Q ss_pred ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321 6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78 (102)
Q Consensus 6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~ 78 (102)
.+|+.++=-.+.+++|.+.+..+.+..+.+.+.+.+-.++.+|+|||||||||++.|||+.++.+...+...+
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~ 270 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTE 270 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecc
Confidence 6788888888999999999999999999999999999999999999999999999999999998877665543
No 336
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.1e-11 Score=80.15 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=39.9
Q ss_pred HHHHh--cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321 33 EYYEE--MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78 (102)
Q Consensus 33 ~~~~~--~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~ 78 (102)
.+|.+ |.+.+|+.+-|.||||+|||||+|+|+|++.|..++|...+
T Consensus 16 ~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~ 63 (209)
T COG4133 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQG 63 (209)
T ss_pred eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecC
Confidence 34444 56889999999999999999999999999999999887663
No 337
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.21 E-value=1.2e-11 Score=81.71 Aligned_cols=65 Identities=18% Similarity=0.097 Sum_probs=52.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhhc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVRN 101 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~~ 101 (102)
++++..++++.++|-||+|||||+++|+|.+.++.++|..............+...++-|||+|.
T Consensus 26 sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~ 90 (263)
T COG1101 26 SLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPL 90 (263)
T ss_pred ceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchh
Confidence 57789999999999999999999999999999998877766544344455555567888999873
No 338
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.20 E-value=9e-11 Score=88.16 Aligned_cols=87 Identities=39% Similarity=0.702 Sum_probs=70.4
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 84 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~ 84 (102)
...|+++.|++..++++.+.+.+ +..++.+..+....+++++|+||||||||++++++++....+++.+.+.++...+.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 46799999999999999998887 45566667777666778999999999999999999999999988888877665555
Q ss_pred CchHHHHH
Q psy16321 85 GDGPKLVR 92 (102)
Q Consensus 85 ~~~~~~~~ 92 (102)
+....+.+
T Consensus 227 g~~~~~~~ 234 (644)
T PRK10733 227 GVGASRVR 234 (644)
T ss_pred cccHHHHH
Confidence 55444433
No 339
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.20 E-value=5e-12 Score=92.07 Aligned_cols=64 Identities=13% Similarity=0.016 Sum_probs=45.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch-HHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG-PKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.+|..|.+...+......... ..+..++|++|++
T Consensus 268 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~ 332 (491)
T PRK10982 268 SFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEER 332 (491)
T ss_pred eEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCch
Confidence 466899999999999999999999999999998888776543211111111 1223477887763
No 340
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.20 E-value=7.3e-12 Score=100.86 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=56.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+|++|||||||+++|.+++.+..|.|..++......+....|.++++++|++
T Consensus 1306 s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp 1369 (1522)
T TIGR00957 1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDP 1369 (1522)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCC
Confidence 4568999999999999999999999999999999888877766556677778888999999996
No 341
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.20 E-value=9.2e-12 Score=90.61 Aligned_cols=64 Identities=13% Similarity=0.043 Sum_probs=44.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-cEEEEccchhhh-hccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-TFLRVVGSELIQ-KYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-~~~~i~~~~~~~-~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.++ ..|.+...+... ........+.+++|++|++
T Consensus 280 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 345 (490)
T PRK10938 280 SWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSL 345 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHH
Confidence 466889999999999999999999999998654 356665443211 1011122345688988864
No 342
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.20 E-value=2.4e-11 Score=82.59 Aligned_cols=60 Identities=20% Similarity=0.110 Sum_probs=44.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccch
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVP 97 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (102)
+|++++|++++++||||+||||++|.+.|++.|..|.+...... ++....+.-+++++|+
T Consensus 44 sf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~-Pf~~~~~~~~~~~~v~ 103 (325)
T COG4586 44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD-PFRRREEYLRSIGLVM 103 (325)
T ss_pred eeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcC-cchhHHHHHHHHHHHh
Confidence 47799999999999999999999999999999998887655432 2223333334555544
No 343
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=5.3e-12 Score=92.72 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=35.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
++.+.+|+.++|+||||||||||+++|+|++.|..|.+..
T Consensus 339 s~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~ 378 (530)
T PRK15064 339 NLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKW 378 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 4668899999999999999999999999999988887754
No 344
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.19 E-value=4.7e-12 Score=93.40 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=35.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
++.+.+|+.++|+||||||||||+++|+|+..|..|.+..
T Consensus 25 s~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~ 64 (552)
T TIGR03719 25 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARP 64 (552)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 4678999999999999999999999999999888777654
No 345
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.19 E-value=2e-11 Score=77.03 Aligned_cols=63 Identities=16% Similarity=0.081 Sum_probs=47.6
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc---EEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT---FLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
.++++.+|+++.|.||||||||||+..++|.+.+. .+++..++.... .....++++++.||++
T Consensus 21 ~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~--~lPa~qRq~GiLFQD~ 86 (213)
T COG4136 21 VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD--MLPAAQRQIGILFQDA 86 (213)
T ss_pred eeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeecc--ccchhhhheeeeeccc
Confidence 36778999999999999999999999999988765 455555443222 2334566789999874
No 346
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.19 E-value=1.5e-11 Score=80.43 Aligned_cols=60 Identities=15% Similarity=0.036 Sum_probs=45.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccch
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVP 97 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (102)
+|.+..|++++|.||||+||||++|.|+.++.|+.+.+.......... ....+++++.++
T Consensus 22 SF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGVl~ 81 (245)
T COG4555 22 SFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGVLF 81 (245)
T ss_pred eEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcceec
Confidence 577889999999999999999999999999999988877655432211 223445566655
No 347
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=4.9e-12 Score=92.88 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=35.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
++.+.+|+.++|+||||||||||+++|+|+++|+.|.+..
T Consensus 21 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (530)
T PRK15064 21 SVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL 60 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 4678999999999999999999999999999888777654
No 348
>KOG0056|consensus
Probab=99.18 E-value=1.6e-11 Score=89.21 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=55.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
+|.+.+|+.++++||||+||||++|.+-++.+...|.|..++...+.+..+..|..++.|||+.
T Consensus 558 sF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDt 621 (790)
T KOG0056|consen 558 SFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDT 621 (790)
T ss_pred eEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcc
Confidence 4678999999999999999999999999999988777766665556777788888999999985
No 349
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.18 E-value=1.1e-11 Score=81.70 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=35.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~ 75 (102)
++.+.+|+.++|+||||||||||+++|+|+..+..|++.
T Consensus 7 s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~ 45 (213)
T PRK15177 7 DFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFI 45 (213)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEE
Confidence 577899999999999999999999999999988877764
No 350
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.18 E-value=4.9e-12 Score=94.53 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=36.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
+|++.+|++++|+||||||||||+++|+|++.+..+.+..
T Consensus 36 s~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~ 75 (623)
T PRK10261 36 SFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQC 75 (623)
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEE
Confidence 5778999999999999999999999999999888777654
No 351
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.17 E-value=1.7e-11 Score=81.30 Aligned_cols=56 Identities=14% Similarity=0.048 Sum_probs=43.5
Q ss_pred HHHhhhhcCChHHHHh--cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 22 KESVELPLTHPEYYEE--MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 22 ~~~~~~~~~~~~~~~~--~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
.+.+...+.....+.+ +++.+|+.++|+||||||||||+++|+|+.++..+++...
T Consensus 25 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~ 82 (224)
T cd03220 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVR 82 (224)
T ss_pred hhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 3344445544445554 6789999999999999999999999999998887776543
No 352
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.17 E-value=1.8e-11 Score=82.77 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=33.8
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321 40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75 (102)
Q Consensus 40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~ 75 (102)
+.+|+.++|+||||||||||+++|+|+++|+.|.+.
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~ 58 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFD 58 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEe
Confidence 578999999999999999999999999999988884
No 353
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.17 E-value=1.2e-11 Score=89.78 Aligned_cols=66 Identities=15% Similarity=0.144 Sum_probs=51.4
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhhc
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVRN 101 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~~ 101 (102)
.+|.+.+|++.+|+|.||+|||||+|.|+|.+.|+.|++..+.....+....+ ....+..++|+.+
T Consensus 27 v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~ 93 (500)
T COG1129 27 VSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELS 93 (500)
T ss_pred ceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechh
Confidence 35788999999999999999999999999999999888876654433333333 3345888888753
No 354
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.3e-11 Score=80.73 Aligned_cols=62 Identities=18% Similarity=0.288 Sum_probs=43.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC--ccEEEEcc--chhhhhccCchHH-HHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS--ATFLRVVG--SELIQKYLGDGPK-LVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~--~~~~~i~~--~~~~~~~~~~~~~-~~~~~~~~q~~ 100 (102)
|+.+.+|++.+|.||||||||||+++|+|... .+.+.|.. .++.. ....|+ +..+...||.|
T Consensus 24 nL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~--l~~~ERAr~GifLafQ~P 90 (251)
T COG0396 24 NLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILE--LSPDERARAGIFLAFQYP 90 (251)
T ss_pred ceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccccc--CCHhHHHhcCCEEeecCC
Confidence 57789999999999999999999999999764 44555544 44432 232333 33455667765
No 355
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.16 E-value=3e-11 Score=80.79 Aligned_cols=71 Identities=17% Similarity=0.101 Sum_probs=48.5
Q ss_pred hcCChHHHHh--cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc-hHHHHHHccchh
Q psy16321 28 PLTHPEYYEE--MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD-GPKLVRVALVPE 98 (102)
Q Consensus 28 ~~~~~~~~~~--~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~q 98 (102)
.+..+.+..+ +.+++++...|+||||||||||++.+++...|..+.+..-........- .+.++++++|..
T Consensus 40 ~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~ 113 (257)
T COG1119 40 RRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSS 113 (257)
T ss_pred EECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCH
Confidence 3444445554 5689999999999999999999999999998865444322111111111 567778888754
No 356
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.16 E-value=1.4e-11 Score=92.45 Aligned_cols=64 Identities=14% Similarity=0.064 Sum_probs=48.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHH----HHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPK----LVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+++++.+.+..++.........+. ++.++|++|++
T Consensus 28 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~ 95 (648)
T PRK10535 28 SLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRY 95 (648)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCc
Confidence 56789999999999999999999999999999988877655432222222221 34588999875
No 357
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.15 E-value=2.1e-11 Score=87.86 Aligned_cols=65 Identities=14% Similarity=0.079 Sum_probs=51.4
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC-chHHHHHHccchhhh
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG-DGPKLVRVALVPEVR 100 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~q~~ 100 (102)
-++++.+|++.+|+|.||+|||||+++|.|++.|+.|+|..+........ ....+..+++|+|++
T Consensus 23 V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF 88 (501)
T COG3845 23 VSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHF 88 (501)
T ss_pred eeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeecc
Confidence 35788999999999999999999999999999999888766543333322 334456799999975
No 358
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.15 E-value=1.5e-11 Score=90.93 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=35.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
++.+.+|++++|+||||||||||+++|+|+..|..|.|..
T Consensus 344 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~ 383 (556)
T PRK11819 344 SFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383 (556)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 3568899999999999999999999999999988887754
No 359
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.15 E-value=2.5e-11 Score=82.51 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=36.2
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
.++.+.+|+.++|+||||||||||+++|+|++++..|.+..
T Consensus 43 is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 43 ISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 35778999999999999999999999999999888776643
No 360
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.15 E-value=2.4e-11 Score=81.12 Aligned_cols=42 Identities=26% Similarity=0.225 Sum_probs=37.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~ 78 (102)
+|++.+|+.++|+|+||||||||+|.|+|.++|+.|.+....
T Consensus 47 sf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G 88 (249)
T COG1134 47 SFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG 88 (249)
T ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc
Confidence 577899999999999999999999999999999988876543
No 361
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.14 E-value=1.5e-11 Score=90.84 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=35.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
++.+.+|++++|+||||||||||+++|+|+..|..|.|..
T Consensus 342 sl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~ 381 (552)
T TIGR03719 342 SFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI 381 (552)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE
Confidence 4568899999999999999999999999999988887754
No 362
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.13 E-value=5.3e-11 Score=80.54 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=39.2
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~ 78 (102)
.+|++.+|+.++|+|+|||||||+.|+|.++..|+.|+|.+.+
T Consensus 32 Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g 74 (268)
T COG4608 32 VSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG 74 (268)
T ss_pred eeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcC
Confidence 4678999999999999999999999999999999988887654
No 363
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.12 E-value=3e-11 Score=88.53 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=35.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhh--CccEEEEcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT--SATFLRVVG 76 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~--~~~~~~i~~ 76 (102)
++.+.+|+.++|+||||||||||+++|+|+. .|..|++..
T Consensus 20 s~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~ 61 (520)
T TIGR03269 20 SFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIY 61 (520)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEE
Confidence 4678999999999999999999999999996 577777654
No 364
>PRK13409 putative ATPase RIL; Provisional
Probab=99.12 E-value=3.3e-11 Score=89.71 Aligned_cols=40 Identities=28% Similarity=0.192 Sum_probs=35.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
++.+.+|++++|+||||||||||+++|+|+++|..|.+..
T Consensus 359 s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~ 398 (590)
T PRK13409 359 GGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDP 398 (590)
T ss_pred ceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 3456899999999999999999999999999988777653
No 365
>PLN03073 ABC transporter F family; Provisional
Probab=99.11 E-value=1.9e-11 Score=92.61 Aligned_cols=39 Identities=23% Similarity=0.426 Sum_probs=35.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~ 75 (102)
++.+.+|+.++|+||||||||||+++|+|+.+|..|.+.
T Consensus 529 sl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~ 567 (718)
T PLN03073 529 NFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF 567 (718)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEE
Confidence 456889999999999999999999999999998877765
No 366
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.11 E-value=5.2e-11 Score=82.17 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=45.8
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhC-cc----EEEEccchhhhhccCchHH----HHHHccchhhhc
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-AT----FLRVVGSELIQKYLGDGPK----LVRVALVPEVRN 101 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-~~----~~~i~~~~~~~~~~~~~~~----~~~~~~~~q~~~ 101 (102)
-+|++.+|+.++|+|.|||||||++++|.++++ +. .+++.+.+...-...+.+. ...++++||++.
T Consensus 24 vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~ 98 (316)
T COG0444 24 VSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPM 98 (316)
T ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCch
Confidence 367899999999999999999999999999997 32 3444433221111222221 235899999974
No 367
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.11 E-value=2.4e-11 Score=91.41 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=34.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~ 75 (102)
++++++|+.++|+||||||||||+++|+|+.++..|.+.
T Consensus 472 sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~ 510 (659)
T TIGR00954 472 SFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLT 510 (659)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEe
Confidence 456889999999999999999999999999988777664
No 368
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.11 E-value=2.8e-11 Score=90.67 Aligned_cols=40 Identities=30% Similarity=0.353 Sum_probs=35.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
++.+.+|+.++|+||||||||||+++|+|++.|+.|.+..
T Consensus 339 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~ 378 (635)
T PRK11147 339 SAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC 378 (635)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 4568899999999999999999999999999888777754
No 369
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.10 E-value=8.2e-11 Score=75.91 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=49.0
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhh---h--ccCchHHHH----HHccchhhhc
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ---K--YLGDGPKLV----RVALVPEVRN 101 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~---~--~~~~~~~~~----~~~~~~q~~~ 101 (102)
.+|++.||+.++|+|.||||||||+++|++.+.|+.+.+.+..... + ...+.+++. .-+||.|+|.
T Consensus 25 vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~ 99 (258)
T COG4107 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPR 99 (258)
T ss_pred cceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCcc
Confidence 4678899999999999999999999999999999887776543211 1 123333332 2579998875
No 370
>KOG0055|consensus
Probab=99.10 E-value=7.6e-11 Score=92.29 Aligned_cols=68 Identities=19% Similarity=0.166 Sum_probs=57.9
Q ss_pred HHHh--cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhhc
Q psy16321 34 YYEE--MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVRN 101 (102)
Q Consensus 34 ~~~~--~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~~ 101 (102)
.+.+ +++.+|+.++|+|||||||||++..|-+.++|..|.|..++...+.......|.+++.|.|+|.
T Consensus 1005 Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~ 1074 (1228)
T KOG0055|consen 1005 VLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPV 1074 (1228)
T ss_pred hhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCch
Confidence 4444 5688999999999999999999999999999998877766555577778888899999999973
No 371
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=2.1e-11 Score=91.45 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=35.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
++.+.+|+.++|+||||||||||+++|+|+..|..|.|..
T Consensus 332 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~ 371 (638)
T PRK10636 332 KLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL 371 (638)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 3567899999999999999999999999999888777654
No 372
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.10 E-value=4.2e-11 Score=96.44 Aligned_cols=63 Identities=17% Similarity=0.122 Sum_probs=53.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+|++|||||||+++|.|++. ..|.|..++......+....+.++++++|++
T Consensus 1239 s~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp 1301 (1490)
T TIGR01271 1239 SFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKV 1301 (1490)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCC
Confidence 36689999999999999999999999999987 6677766665545666677888999999986
No 373
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.10 E-value=4e-11 Score=98.44 Aligned_cols=63 Identities=19% Similarity=0.159 Sum_probs=48.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|++++|.||||||||||+++|+|+..|+.|++...+..... ...+.++.++|++|+.
T Consensus 1959 Sf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~IGy~pQ~~ 2021 (2272)
T TIGR01257 1959 CVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGYCPQFD 2021 (2272)
T ss_pred EEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhEEEEeccc
Confidence 46688999999999999999999999999999998887654322111 1223455799999974
No 374
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.09 E-value=9.7e-11 Score=81.09 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=48.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch----HHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG----PKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~q~~ 100 (102)
++++..|+++.|.|-||||||||+|++.++..|+.+++...+...-..... -++.++++|||..
T Consensus 48 sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F 115 (386)
T COG4175 48 SLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSF 115 (386)
T ss_pred eeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhh
Confidence 577899999999999999999999999999999977776543221222222 2345689999974
No 375
>PLN03211 ABC transporter G-25; Provisional
Probab=99.08 E-value=4.2e-11 Score=90.11 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=46.5
Q ss_pred HHHHh--cCCCCCceeEEECCCCCChhHHHHHHHhhhCcc--EEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 33 EYYEE--MGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT--FLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 33 ~~~~~--~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
.++++ +.+.+|+.++|+||||||||||+++|+|...+. .|++..++... . ...+++++|++|+.
T Consensus 82 ~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~---~-~~~~~~i~yv~Q~~ 149 (659)
T PLN03211 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKP---T-KQILKRTGFVTQDD 149 (659)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEEC---c-hhhccceEEECccc
Confidence 34444 568899999999999999999999999998764 67665543211 1 12234688998874
No 376
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.07 E-value=7e-11 Score=88.63 Aligned_cols=40 Identities=30% Similarity=0.238 Sum_probs=36.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
+|.+.+|+.++|+||||||||||+++|+|++.|+.|.|..
T Consensus 21 s~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~ 60 (638)
T PRK10636 21 TATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTF 60 (638)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 4678999999999999999999999999999888777654
No 377
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.06 E-value=5.9e-10 Score=74.09 Aligned_cols=66 Identities=26% Similarity=0.358 Sum_probs=44.9
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
.+++++++.|.++.++.++-.+...... -.+-..++|+||||+|||||++.||..++......++.
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~ 84 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGP 84 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECC
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccch
Confidence 4679999999999999877655432111 12345789999999999999999999998876655553
No 378
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.05 E-value=1e-10 Score=87.68 Aligned_cols=40 Identities=28% Similarity=0.335 Sum_probs=35.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
+|.+.+|+.++|+||||||||||+++|+|+..|+.|.|..
T Consensus 23 s~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~ 62 (635)
T PRK11147 23 ELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIY 62 (635)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEe
Confidence 4678999999999999999999999999999888777654
No 379
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.05 E-value=1.1e-10 Score=87.25 Aligned_cols=61 Identities=21% Similarity=0.131 Sum_probs=45.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc---EEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT---FLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|...+. .|++..++... .....++.++|++|++
T Consensus 45 s~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~---~~~~~~~~i~yv~Q~~ 108 (617)
T TIGR00955 45 SGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI---DAKEMRAISAYVQQDD 108 (617)
T ss_pred EEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEEC---CHHHHhhhceeecccc
Confidence 3558899999999999999999999999987663 56565443321 1234456789999975
No 380
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.04 E-value=8.7e-11 Score=96.51 Aligned_cols=63 Identities=13% Similarity=0.056 Sum_probs=47.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+++|+|+..|+.|.+...+..... ...+.++.++|++|+.
T Consensus 950 sl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG~~pQ~~ 1012 (2272)
T TIGR01257 950 NITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHN 1012 (2272)
T ss_pred EEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEEEEecCC
Confidence 46688999999999999999999999999999998877654321111 1223445689999874
No 381
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.04 E-value=6.1e-11 Score=77.45 Aligned_cols=64 Identities=17% Similarity=0.261 Sum_probs=40.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEE-Eccc---hhhhh--ccCchHHHHHHccchhhhc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR-VVGS---ELIQK--YLGDGPKLVRVALVPEVRN 101 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~-i~~~---~~~~~--~~~~~~~~~~~~~~~q~~~ 101 (102)
++++.++ .++|+||||+|||||+++|++++++..+. +... ++... .........+++++||+++
T Consensus 17 ~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~ 86 (197)
T cd03278 17 TIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSD 86 (197)
T ss_pred eeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCC
Confidence 4567777 99999999999999999999987654221 1111 11110 0001122356889999864
No 382
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.03 E-value=8.7e-11 Score=81.90 Aligned_cols=51 Identities=24% Similarity=0.249 Sum_probs=37.4
Q ss_pred EECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 48 LYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 48 l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
|+||||||||||+++|+|+.++..|.+...+.... .....+++++|++|++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~--~~~~~~~~i~~v~q~~ 51 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVT--NVPPHLRHINMVFQSY 51 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECC--CCCHHHCCEEEEecCc
Confidence 57999999999999999999998888765432111 1122345688999875
No 383
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.02 E-value=2.9e-10 Score=73.08 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=46.6
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh--hhhccCc------hHHHHHHccchhh
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL--IQKYLGD------GPKLVRVALVPEV 99 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~--~~~~~~~------~~~~~~~~~~~q~ 99 (102)
.+|+++.|++++|.||||+||||++|++-+-+.++.++|..... ..+.... .-++..++||.|.
T Consensus 30 vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQF 101 (235)
T COG4778 30 VSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQF 101 (235)
T ss_pred eeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHH
Confidence 35778999999999999999999999999999999877754311 1111111 1234568898885
No 384
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.02 E-value=2.4e-10 Score=83.73 Aligned_cols=66 Identities=18% Similarity=0.132 Sum_probs=47.8
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc----EEEEccchhhhhccCchH----HHHHHccchhhhc
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT----FLRVVGSELIQKYLGDGP----KLVRVALVPEVRN 101 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~----~~~i~~~~~~~~~~~~~~----~~~~~~~~~q~~~ 101 (102)
-||++.+|+.++|+|.|||||||++++|.|+++.. .|+|.+.....-...+.+ +..+++++||++.
T Consensus 28 vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 28 VSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred ceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 46789999999999999999999999999998876 566654432111112211 2246999999863
No 385
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.01 E-value=6.5e-11 Score=70.46 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=25.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHH
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVA 64 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~ 64 (102)
++.+.+++.++|.||||||||||++++.
T Consensus 9 sl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 9 LVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 4567889999999999999999999987
No 386
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.01 E-value=1.4e-10 Score=85.32 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=40.1
Q ss_pred cCChHHHH--hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 29 LTHPEYYE--EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 29 ~~~~~~~~--~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
+....++. ++.+.+|+.++|+|+||+|||||+++|+|...++.+.|...
T Consensus 13 ~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~ 63 (530)
T COG0488 13 YGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRP 63 (530)
T ss_pred eCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeec
Confidence 34444555 46688999999999999999999999999999888777543
No 387
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.00 E-value=1.1e-09 Score=66.24 Aligned_cols=48 Identities=48% Similarity=0.794 Sum_probs=38.8
Q ss_pred eEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHH
Q psy16321 46 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRV 93 (102)
Q Consensus 46 ~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (102)
++|+||+|+|||++++.++..+..+...++...+........+...+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~ 48 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRD 48 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccccc
Confidence 579999999999999999999999899998887765555555544443
No 388
>KOG0744|consensus
Probab=99.00 E-value=4.8e-10 Score=77.95 Aligned_cols=88 Identities=25% Similarity=0.295 Sum_probs=59.1
Q ss_pred ccccCChHHHHHHHHHHhhhhcCChHHHHhcC-CCCCceeEEECCCCCChhHHHHHHHhhhCc---------cEEEEccc
Q psy16321 8 LKKRGSLDVQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGPPGTGKTLLAKAVANQTSA---------TFLRVVGS 77 (102)
Q Consensus 8 ~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~-i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~---------~~~~i~~~ 77 (102)
|+++.--...++.+.......+...+...+-. +...+.++++||||+|||+|+|++|..+.. ..++++..
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 55555555666666665544443333222222 455788999999999999999999997642 24567777
Q ss_pred hhhhhccCchHHHHHHcc
Q psy16321 78 ELIQKYLGDGPKLVRVAL 95 (102)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~ 95 (102)
.+.++|.+++-+.....|
T Consensus 221 sLFSKWFsESgKlV~kmF 238 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMF 238 (423)
T ss_pred HHHHHHHhhhhhHHHHHH
Confidence 788888888776654443
No 389
>PLN03140 ABC transporter G family member; Provisional
Probab=99.00 E-value=1.6e-10 Score=92.91 Aligned_cols=60 Identities=23% Similarity=0.207 Sum_probs=45.0
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhhCcc---EEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT---FLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
+.+++|+.++|+||||||||||+++|+|.+++. .|+|..++..... ...+..++|++|+.
T Consensus 186 ~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~---~~~~~~i~yv~Q~d 248 (1470)
T PLN03140 186 GIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNE---FVPRKTSAYISQND 248 (1470)
T ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechh---hcccceeEEecccc
Confidence 458899999999999999999999999998876 6777655432111 11134688888863
No 390
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.99 E-value=7.6e-10 Score=71.77 Aligned_cols=76 Identities=13% Similarity=0.095 Sum_probs=52.0
Q ss_pred hhhcCChHHHH--hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc--chhhhhc-----------cCchHHH
Q psy16321 26 ELPLTHPEYYE--EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG--SELIQKY-----------LGDGPKL 90 (102)
Q Consensus 26 ~~~~~~~~~~~--~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~--~~~~~~~-----------~~~~~~~ 90 (102)
...+...+.++ ++....|+.+.|+|.|||||||++|||.-+..|..+.|.. .++..+. ......+
T Consensus 13 HK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~R 92 (256)
T COG4598 13 HKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLR 92 (256)
T ss_pred HhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHH
Confidence 33444555555 3556789999999999999999999999999998666543 3332111 1112344
Q ss_pred HHHccchhhhc
Q psy16321 91 VRVALVPEVRN 101 (102)
Q Consensus 91 ~~~~~~~q~~~ 101 (102)
.+.++|||..|
T Consensus 93 s~L~mVFQ~FN 103 (256)
T COG4598 93 TRLGMVFQHFN 103 (256)
T ss_pred HHhhHhhhhcc
Confidence 57899999865
No 391
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.99 E-value=3.8e-10 Score=81.88 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=39.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEE-EEc--cchhhhhccCchHHHHHHccchhhhc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFL-RVV--GSELIQKYLGDGPKLVRVALVPEVRN 101 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~-~i~--~~~~~~~~~~~~~~~~~~~~~~q~~~ 101 (102)
++.+.+|+.++|+||||||||||++ +++..++.+ .+. +.++.. ....+ ....-+|+|+.+
T Consensus 26 sl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~--~~~~a-i~~LR~VFQ~fn 88 (504)
T TIGR03238 26 NKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFS--PNKNA-METLDEIFDGFN 88 (504)
T ss_pred ceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCC--CCHHH-HHHHHHHHHhhh
Confidence 5678899999999999999999999 566666544 344 333322 22222 112228888754
No 392
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.98 E-value=2.8e-10 Score=83.62 Aligned_cols=40 Identities=23% Similarity=0.166 Sum_probs=35.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
++.+.+|+.++|+||||+|||||+++|+|+..|..|.+..
T Consensus 44 SfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I 83 (549)
T PRK13545 44 SFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDI 83 (549)
T ss_pred EEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 5678899999999999999999999999999888777654
No 393
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.96 E-value=1.3e-09 Score=70.46 Aligned_cols=63 Identities=17% Similarity=0.133 Sum_probs=45.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
+..+..|+.+-++||||||||||+..+||+.+.. ++|.........+...+..++.+|..|+.
T Consensus 19 S~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~s-Gsi~~~G~~l~~~~~~eLArhRAYLsQqq 81 (248)
T COG4138 19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS-GSIQFAGQPLEAWSATELARHRAYLSQQQ 81 (248)
T ss_pred ccccccceEEEEECCCCccHHHHHHHHhCCCCCC-ceEEECCcchhHHhHhHHHHHHHHHhhcc
Confidence 3467889999999999999999999999987654 44443333334445566667777877764
No 394
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.95 E-value=7.1e-10 Score=79.10 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=50.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc--chhhh-hccCchHHHHHHccchhhhcC
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG--SELIQ-KYLGDGPKLVRVALVPEVRNG 102 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~--~~~~~-~~~~~~~~~~~~~~~~q~~~~ 102 (102)
++++.+|+.++|+|.|||||||+.++|.+++++. |.|.+ .++.. ........++++..|||+|.|
T Consensus 307 sl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPyg 374 (534)
T COG4172 307 SLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYG 374 (534)
T ss_pred eeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCC
Confidence 4678899999999999999999999999998877 55554 44432 122334566789999999865
No 395
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.95 E-value=2e-10 Score=75.05 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=48.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch-hhhhccCchH-HHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE-LIQKYLGDGP-KLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~-~~~~~~~~~~-~~~~~~~~~q~~ 100 (102)
+|.+.+|+.-+|+||||+||||++.+|.|..+|..+.+...+ .......+.+ .+..++--||.|
T Consensus 25 s~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~P 90 (249)
T COG4674 25 SFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKP 90 (249)
T ss_pred EEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCC
Confidence 467899999999999999999999999999999988887654 3223333333 344577777765
No 396
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.95 E-value=3.6e-10 Score=90.68 Aligned_cols=59 Identities=20% Similarity=0.136 Sum_probs=44.6
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhhC---ccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTS---ATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
+.+.+|+.++|+||||||||||+++|+|... +..|++..++.... ...+++++|++|+.
T Consensus 784 ~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~ 845 (1394)
T TIGR00956 784 GWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQD 845 (1394)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccc
Confidence 5578999999999999999999999999986 45576654432111 13455689999874
No 397
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.94 E-value=3e-10 Score=91.58 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=35.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
++.+++|+.++|+||||||||||+++|+|++++..|.+..
T Consensus 446 ~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~ 485 (1490)
T TIGR01271 446 SFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKH 485 (1490)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 4668899999999999999999999999999998777654
No 398
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.94 E-value=3.4e-10 Score=91.48 Aligned_cols=40 Identities=23% Similarity=0.157 Sum_probs=35.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
++.+++|+.++|+||||||||||+++|+|++++..|.+..
T Consensus 658 sl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~ 697 (1522)
T TIGR00957 658 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHM 697 (1522)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEE
Confidence 4668899999999999999999999999999988777654
No 399
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.92 E-value=8.1e-10 Score=78.69 Aligned_cols=43 Identities=23% Similarity=0.226 Sum_probs=38.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 79 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~ 79 (102)
|+++..|+.+.|+|.|||||||+++.+.|++.|..|.|..++-
T Consensus 343 Nl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~ 385 (546)
T COG4615 343 NLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385 (546)
T ss_pred eeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCc
Confidence 5678899999999999999999999999999999888766543
No 400
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.92 E-value=7.4e-10 Score=71.32 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=26.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVAN 65 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~ 65 (102)
++++.+|+.++|.||||||||||++++.+
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 57789999999999999999999999863
No 401
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.90 E-value=4e-10 Score=90.43 Aligned_cols=62 Identities=21% Similarity=0.178 Sum_probs=43.5
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhh----CccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQT----SATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
+.+.+|+.++|+||||||||||+++|+|.. .+..|+|..++....... ...+..++|++|+.
T Consensus 82 ~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d 147 (1394)
T TIGR00956 82 GLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETD 147 (1394)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEecccc
Confidence 457899999999999999999999999986 345677765543211111 11223478888863
No 402
>PRK04195 replication factor C large subunit; Provisional
Probab=98.90 E-value=5.1e-09 Score=76.45 Aligned_cols=66 Identities=35% Similarity=0.479 Sum_probs=53.4
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~ 78 (102)
.+++++++.|.+..++.|++.+..... -.+...++|+||+|+||||++++++..+......++.++
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~---------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLK---------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 478999999999999999988754221 123678999999999999999999999887777776544
No 403
>PRK13409 putative ATPase RIL; Provisional
Probab=98.90 E-value=1e-09 Score=81.84 Aligned_cols=37 Identities=24% Similarity=0.189 Sum_probs=34.3
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~ 75 (102)
.+.+|++++|+||||+|||||+++|+|++.|+.|.+.
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~ 131 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE 131 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcccc
Confidence 4778999999999999999999999999999988875
No 404
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.90 E-value=5.3e-09 Score=71.93 Aligned_cols=60 Identities=27% Similarity=0.383 Sum_probs=46.3
Q ss_pred ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321 6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73 (102)
Q Consensus 6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~ 73 (102)
++|+++.|.++.++.|+..+....... .....++|+||+|+|||+|+++++..+......
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~ 60 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKI 60 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 479999999999999988774322111 234568999999999999999999988765433
No 405
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.3e-09 Score=76.59 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=53.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++++||+|+||||+++.+-+.+++..|.|..++...+.......++.++.|||+.
T Consensus 283 sf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDt 346 (497)
T COG5265 283 SFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDT 346 (497)
T ss_pred cccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccc
Confidence 5678999999999999999999999999999999877765544445556667778899999984
No 406
>PLN03130 ABC transporter C family member; Provisional
Probab=98.88 E-value=7.5e-10 Score=89.88 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=35.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccE-EEEc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF-LRVV 75 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~-~~i~ 75 (102)
++.+++|+.++|+||+|||||||+++|.|++++.. |.+.
T Consensus 637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~ 676 (1622)
T PLN03130 637 NLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV 676 (1622)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE
Confidence 46688999999999999999999999999999887 7764
No 407
>PTZ00243 ABC transporter; Provisional
Probab=98.87 E-value=8.4e-10 Score=89.36 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=35.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~ 75 (102)
++.+++|+.++|+||||||||||+++|+|++.+..|.+.
T Consensus 680 sl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~ 718 (1560)
T PTZ00243 680 SVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW 718 (1560)
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence 467899999999999999999999999999998877764
No 408
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.86 E-value=4.5e-09 Score=67.23 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=45.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc--cchhh-hhccC---chHHHHHHccchhhhc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV--GSELI-QKYLG---DGPKLVRVALVPEVRN 101 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~--~~~~~-~~~~~---~~~~~~~~~~~~q~~~ 101 (102)
+++.+.|+.+.+.||||+|||||+|.+.-+.-|..+.+. .+.+. +.... ..+.|+.+++|||.++
T Consensus 22 ~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~ 92 (242)
T COG4161 22 TLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92 (242)
T ss_pred eecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhc
Confidence 456788999999999999999999999887777655543 33221 11111 2345567999999864
No 409
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.85 E-value=8.8e-09 Score=72.64 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=48.8
Q ss_pred ccccc-ccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-------cEEEEcc
Q psy16321 5 YKALK-KRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-------TFLRVVG 76 (102)
Q Consensus 5 ~~~~~-~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-------~~~~i~~ 76 (102)
+.-|+ ++.|+++.++++.+.+.... ...+ .+.+.++|.||||||||||+++|++.+.. ..+.+.+
T Consensus 46 y~~F~~~~~G~~~~i~~lv~~l~~~a------~g~~-~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 46 YRFFDHDFFGMEEAIERFVNYFKSAA------QGLE-ERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccccchhccCcHHHHHHHHHHHHHHH------hcCC-CCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 45566 99999999999887765432 1122 34578899999999999999999998755 4555555
No 410
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.83 E-value=3.9e-09 Score=69.22 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=26.5
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
+++..++|.||||||||||+++|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 56889999999999999999999998875
No 411
>PLN03140 ABC transporter G family member; Provisional
Probab=98.83 E-value=1.6e-09 Score=87.37 Aligned_cols=61 Identities=16% Similarity=0.076 Sum_probs=43.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc--cEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA--TFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|...+ ..|.+..++.. ......++.++|++|+.
T Consensus 900 s~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~---~~~~~~~~~igyv~Q~d 962 (1470)
T PLN03140 900 TGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP---KKQETFARISGYCEQND 962 (1470)
T ss_pred EEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc---CChHHhhhheEEEcccc
Confidence 345789999999999999999999999998653 34555433321 11123345679999874
No 412
>KOG0054|consensus
Probab=98.82 E-value=2.3e-09 Score=85.41 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=62.0
Q ss_pred CChHHHHh--cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 30 THPEYYEE--MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 30 ~~~~~~~~--~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
..|...++ +.+.+++.++|+|..|||||||+.+|-++..+..|.|..+++.....+....|.+++.+||+|
T Consensus 1151 ~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdP 1223 (1381)
T KOG0054|consen 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDP 1223 (1381)
T ss_pred CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCC
Confidence 33445554 568999999999999999999999999999999888888887778889999999999999997
No 413
>PLN03232 ABC transporter C family member; Provisional
Probab=98.82 E-value=7.9e-10 Score=89.28 Aligned_cols=36 Identities=28% Similarity=0.265 Sum_probs=32.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
++.+++|+.++|+||+|||||||+++|.|++++..+
T Consensus 637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G 672 (1495)
T PLN03232 637 NLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAET 672 (1495)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCC
Confidence 466899999999999999999999999999988754
No 414
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.82 E-value=5e-09 Score=67.75 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=31.2
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV 74 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i 74 (102)
+.+..++.++|+||+||||||++++|+++.++....+
T Consensus 20 ~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i 56 (186)
T cd01130 20 LAVEARKNILISGGTGSGKTTLLNALLAFIPPDERII 56 (186)
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEE
Confidence 3467899999999999999999999999987764443
No 415
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.79 E-value=2.4e-08 Score=71.75 Aligned_cols=76 Identities=24% Similarity=0.410 Sum_probs=53.8
Q ss_pred ccCChHHHHHHHHHHhhhhcCChHHHHhcC-CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhh-hhccC
Q psy16321 10 KRGSLDVQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI-QKYLG 85 (102)
Q Consensus 10 ~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~-i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~-~~~~~ 85 (102)
-|.|.++.++.+...+...+....+...+. -.++..++|+||+|||||+++++|+..++.++..++...+. ..+.+
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG 90 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 90 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCccc
Confidence 478888888888777765443332222221 11347899999999999999999999999988888766543 24545
No 416
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=8.2e-09 Score=77.58 Aligned_cols=64 Identities=27% Similarity=0.333 Sum_probs=52.5
Q ss_pred cccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321 9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 79 (102)
Q Consensus 9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~ 79 (102)
.+.-||+++++.|.+.+....... --.|.++||+||||.|||+|.+.||.-++..++.+....+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~-------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGv 386 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTK-------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGV 386 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhc-------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCcc
Confidence 466799999999999887643321 1357899999999999999999999999999988876655
No 417
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.78 E-value=1.2e-08 Score=83.04 Aligned_cols=52 Identities=21% Similarity=0.511 Sum_probs=45.6
Q ss_pred CChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhh
Q psy16321 30 THPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ 81 (102)
Q Consensus 30 ~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~ 81 (102)
..+.....+++.++++++|+||||||||.|+|++|+....+++.+.++++..
T Consensus 1617 ~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1617 HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred cCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 3445667788899999999999999999999999999999999998887764
No 418
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.77 E-value=8.5e-09 Score=66.59 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=25.1
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
++.++|+|||||||||+++.|++...+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~ 29 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQ 29 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCe
Confidence 5689999999999999999999987664
No 419
>KOG0059|consensus
Probab=98.76 E-value=4.9e-09 Score=81.31 Aligned_cols=64 Identities=17% Similarity=0.104 Sum_probs=50.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhh-hccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ-KYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~q~~ 100 (102)
++.++++++.++.||||+||||+++++.|...++.|++...+... ........+..+||+||..
T Consensus 585 s~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d 649 (885)
T KOG0059|consen 585 SFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFD 649 (885)
T ss_pred EEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchh
Confidence 467899999999999999999999999999999988776543322 2223344667899999973
No 420
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.76 E-value=1.5e-08 Score=65.11 Aligned_cols=29 Identities=34% Similarity=0.515 Sum_probs=26.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
+|+.++++|||||||||++++|++++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 47899999999999999999999998874
No 421
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.76 E-value=6e-09 Score=76.84 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=34.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~ 75 (102)
++.+.+|+.++|+||||+|||||++.|+|...+..|.+.
T Consensus 342 s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~ 380 (530)
T COG0488 342 SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK 380 (530)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEE
Confidence 456889999999999999999999999998877766554
No 422
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.76 E-value=1.9e-08 Score=77.19 Aligned_cols=61 Identities=28% Similarity=0.349 Sum_probs=47.4
Q ss_pred ccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 10 KRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 10 ~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
++.|++++++.|.+.+...... .-..+..++|+||||||||+++++|++.+...++.+...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~ 381 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLG 381 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCC
Confidence 4789999999988876543211 112456899999999999999999999998887777543
No 423
>KOG0060|consensus
Probab=98.75 E-value=4.1e-09 Score=77.65 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=33.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~ 75 (102)
++.++.|+.++|+||||||||+|+|.++|+-+...|.+.
T Consensus 455 s~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~ 493 (659)
T KOG0060|consen 455 SLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLT 493 (659)
T ss_pred eeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEE
Confidence 356889999999999999999999999998776666553
No 424
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.74 E-value=3e-08 Score=69.16 Aligned_cols=62 Identities=29% Similarity=0.362 Sum_probs=47.8
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV 74 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i 74 (102)
+.+|+++.|.++.++.+...+...... -.+...++|+||+|+||||++++++..+......+
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~ 82 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRIT 82 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEE
Confidence 578999999999999988777432111 12456789999999999999999999887654333
No 425
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.74 E-value=6.1e-09 Score=68.17 Aligned_cols=34 Identities=12% Similarity=0.392 Sum_probs=29.6
Q ss_pred HHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 34 YYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 34 ~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
...++++..++.++|+||||||||||+|+|++..
T Consensus 16 v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 16 VANDIDMEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred ecceEEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 4556777888999999999999999999999854
No 426
>PLN03073 ABC transporter F family; Provisional
Probab=98.73 E-value=5.8e-09 Score=79.35 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=29.5
Q ss_pred HHH--hcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 34 YYE--EMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 34 ~~~--~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
++. ++.+.+|+.++|+||||||||||+++|+|..
T Consensus 192 ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~ 227 (718)
T PLN03073 192 LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHA 227 (718)
T ss_pred EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 444 4678999999999999999999999999853
No 427
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.72 E-value=4.5e-09 Score=70.76 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=25.6
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
+...+|+|||||||||++++|++++.+.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~ 52 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT 52 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc
Confidence 5689999999999999999999998764
No 428
>KOG0064|consensus
Probab=98.72 E-value=7.7e-09 Score=75.93 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=29.5
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~ 71 (102)
+.+.+|-.++|.||||||||+|.|.|+|+-+...
T Consensus 503 f~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~ 536 (728)
T KOG0064|consen 503 FQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYN 536 (728)
T ss_pred EEecCCceEEEECCCCccHHHHHHHHhccCcccC
Confidence 5678899999999999999999999999865433
No 429
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.70 E-value=1.4e-08 Score=69.35 Aligned_cols=57 Identities=19% Similarity=0.144 Sum_probs=39.0
Q ss_pred ceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC-chHHHHHHccchhhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG-DGPKLVRVALVPEVR 100 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~q~~ 100 (102)
..++|+||||||||||+++|++++.+..+.+...+....... ..+......+++|..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~ 169 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD 169 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc
Confidence 689999999999999999999999988776654432111111 233334456666654
No 430
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.70 E-value=4.9e-08 Score=66.94 Aligned_cols=60 Identities=25% Similarity=0.362 Sum_probs=48.0
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~ 71 (102)
.++.|++..|...++++++-.+.-.... -..-.+++|+||||.|||||+..||.++....
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 3678999999999999888766543222 23457999999999999999999999987653
No 431
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.70 E-value=5e-08 Score=70.20 Aligned_cols=76 Identities=24% Similarity=0.393 Sum_probs=53.9
Q ss_pred ccCChHHHHHHHHHHhhhhcCChHHHHhcCC-CCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhh-hccC
Q psy16321 10 KRGSLDVQIQEIKESVELPLTHPEYYEEMGI-KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ-KYLG 85 (102)
Q Consensus 10 ~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i-~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~-~~~~ 85 (102)
.|.|.++.++.+...+...+....+...... ..+..++|+||+|+|||++++.|+..++.+++.++...+.. .|.+
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG 93 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc
Confidence 3889999999988777544332222112211 12478999999999999999999999999888887665543 3555
No 432
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.69 E-value=4.8e-08 Score=65.70 Aligned_cols=58 Identities=29% Similarity=0.378 Sum_probs=47.8
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
+...++++.|++.|++.|.+.....+.. .+...++|.|+.|||||+++|++...+...
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 4678999999999999998887543332 356789999999999999999999977553
No 433
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.67 E-value=1.4e-08 Score=75.48 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=35.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
++.+++|+.++|.||||||||||+|+|||+-+...|.+...
T Consensus 413 ~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P 453 (604)
T COG4178 413 NFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP 453 (604)
T ss_pred eeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC
Confidence 45688999999999999999999999999987766666543
No 434
>KOG0061|consensus
Probab=98.67 E-value=2e-08 Score=75.34 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=44.1
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhhCc---cEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSA---TFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
.+.+|+..++.||||||||||+++|+|.... ..|.+..++. .......+...+||.|+.
T Consensus 52 ~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~~~~~~s~yV~QdD 113 (613)
T KOG0061|consen 52 TAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSRSFRKISGYVQQDD 113 (613)
T ss_pred EEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchhhhhheeEEEcccc
Confidence 4789999999999999999999999998764 3566654442 122334556788999874
No 435
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.66 E-value=5.1e-08 Score=67.64 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=41.6
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
.+.+|+++.|.+.+++.+...+.. .....++|+||+|+||||++++++..+.
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 367899999999999888876642 1112588999999999999999998764
No 436
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.65 E-value=8.4e-08 Score=66.28 Aligned_cols=63 Identities=30% Similarity=0.366 Sum_probs=48.7
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~ 78 (102)
.+++++++.|.+++++.++..+.. + ..+..++++||+|+||||++++++.....+...++..+
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 478999999999999988877641 1 12346667899999999999999998776666665543
No 437
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=6.3e-08 Score=68.52 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=43.8
Q ss_pred cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
+.+++|+++.|.+..++.++..+... .-+..++|+||+|+||||++++++..+.
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 46789999999999999888776431 1123578999999999999999998765
No 438
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.64 E-value=3.9e-08 Score=58.90 Aligned_cols=30 Identities=37% Similarity=0.689 Sum_probs=25.4
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSATFLRV 74 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i 74 (102)
+++|.|||||||||+++.|+..++...+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~ 30 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISM 30 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEe
Confidence 478999999999999999999887655444
No 439
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.64 E-value=7.6e-08 Score=70.98 Aligned_cols=62 Identities=24% Similarity=0.367 Sum_probs=48.7
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~ 73 (102)
.+++.++|.....-+++++..+.-.+ .+-.+.++++|.||+||||||++++||..+.+...+
T Consensus 14 ~P~~~~eLavhkkKv~eV~~wl~~~~--------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 14 APKTLDELAVHKKKVEEVRSWLEEMF--------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred CCCCHHHhhccHHHHHHHHHHHHHHh--------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 36778899999988888888876422 122345688999999999999999999998776544
No 440
>PLN03025 replication factor C subunit; Provisional
Probab=98.63 E-value=7.1e-08 Score=67.10 Aligned_cols=51 Identities=25% Similarity=0.275 Sum_probs=41.2
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
.+++++++.|.+++++.|+..+.. .....++|+||+|+||||++++++..+
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 477999999999999888776432 112258899999999999999999876
No 441
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=7e-08 Score=70.49 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=43.0
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
.+++|+++.|.+..++.|+..+... ..+..++|+||+|+||||++++++..+..
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5789999999999988887765421 12335799999999999999999997654
No 442
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.63 E-value=6e-08 Score=72.93 Aligned_cols=59 Identities=15% Similarity=0.277 Sum_probs=47.8
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
.+++++++.|.+..+++++..+.-. .+...+++.++|+||+||||||+++++++.+...
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~ 137 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQ 137 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhH
Confidence 3678899999999999888776431 2334567889999999999999999999987654
No 443
>KOG2004|consensus
Probab=98.63 E-value=1e-07 Score=72.01 Aligned_cols=64 Identities=25% Similarity=0.362 Sum_probs=52.2
Q ss_pred cccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321 9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 79 (102)
Q Consensus 9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~ 79 (102)
+|.=||+++++.|.+.+...... +-..|+++|++||||.|||+++|.||.-++..++.++...+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~ 474 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGM 474 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccc
Confidence 45678999999999888654322 12469999999999999999999999999999888876544
No 444
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.62 E-value=7.7e-09 Score=68.12 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=22.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHhh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
+++.++|+|||||||||++++|+..
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~ 51 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYA 51 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheee
Confidence 3679999999999999999999964
No 445
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.62 E-value=9.4e-08 Score=73.44 Aligned_cols=62 Identities=24% Similarity=0.312 Sum_probs=48.3
Q ss_pred ccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321 10 KRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78 (102)
Q Consensus 10 ~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~ 78 (102)
++-|++++++.|.+.+...... .-..+..++|+||||+||||+++.|++.++.+++.+....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~ 384 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGG 384 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 4889999999998777643221 1136789999999999999999999999988877776443
No 446
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.61 E-value=9.3e-09 Score=67.49 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=25.7
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHH----hhhCccE
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVA----NQTSATF 71 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~----~~~~~~~ 71 (102)
+.+.++ +++|+||||+|||||+++|. |...+..
T Consensus 18 l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~ 54 (204)
T cd03240 18 IEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNS 54 (204)
T ss_pred EecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCccc
Confidence 455555 99999999999999999996 5544433
No 447
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.60 E-value=1.1e-07 Score=70.66 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=46.0
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
.+.-|+++-|+++.++.|.+.+.... ..++ ....+++|+||+|+|||||+++|+..+..
T Consensus 71 ry~fF~d~yGlee~ieriv~~l~~Aa------~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 71 RYPAFEEFYGMEEAIEQIVSYFRHAA------QGLE-EKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cccchhcccCcHHHHHHHHHHHHHHH------HhcC-CCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 46678999999999999988774321 2222 35679999999999999999999997643
No 448
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.60 E-value=1e-07 Score=68.47 Aligned_cols=61 Identities=31% Similarity=0.467 Sum_probs=46.7
Q ss_pred ccccccccCChHHHHHH---HHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 4 SYKALKKRGSLDVQIQE---IKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~---i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
.+++++++.|.+..+.. |+..+.. .....++|+||+|+||||++++|+......+..+...
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~ 70 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAV 70 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence 46789999999988766 6665521 1223688999999999999999999888777666543
No 449
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=8.5e-08 Score=70.62 Aligned_cols=55 Identities=11% Similarity=0.207 Sum_probs=45.4
Q ss_pred cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
|.+++|+++.|.+.+++.|++.+... .-+..++|+||+|+||||++++++..+.+
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 56889999999999999998877431 12336789999999999999999997754
No 450
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.60 E-value=8.4e-08 Score=57.42 Aligned_cols=35 Identities=34% Similarity=0.668 Sum_probs=28.5
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCcc---EEEEccc
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSAT---FLRVVGS 77 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~---~~~i~~~ 77 (102)
+..++|+||+|+||||+++.++..+... ...+..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~ 39 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE 39 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE
Confidence 5689999999999999999999988765 4444443
No 451
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.58 E-value=4.5e-08 Score=65.12 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=22.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHH
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLA 60 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~ 60 (102)
++++.+|++++|+||||||||||+
T Consensus 15 sl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 15 DVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred eeecCCCcEEEEEcCCCCCHHHHH
Confidence 678999999999999999999996
No 452
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.58 E-value=8.8e-08 Score=51.67 Aligned_cols=34 Identities=24% Similarity=0.469 Sum_probs=26.5
Q ss_pred hcCCCC-CceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 37 EMGIKP-PKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 37 ~~~i~~-~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
.+.+.+ +...+|.||||+||||++.+|.-.+-+.
T Consensus 16 ~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 16 TIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred EEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 344544 3589999999999999999998766543
No 453
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.58 E-value=4e-08 Score=64.19 Aligned_cols=30 Identities=13% Similarity=0.365 Sum_probs=26.6
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHh
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVAN 65 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~ 65 (102)
.++.+..++.++|+||||+||||++++|++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence 346677889999999999999999999994
No 454
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=1.4e-07 Score=67.56 Aligned_cols=61 Identities=16% Similarity=0.314 Sum_probs=47.2
Q ss_pred ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
..|++|+|.+.+++.|++.+....... ..++...+..++|+||+|+|||++++.++..+.+
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 479999999999999999997654322 1223334567899999999999999999986543
No 455
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.3e-07 Score=69.24 Aligned_cols=53 Identities=25% Similarity=0.375 Sum_probs=43.3
Q ss_pred cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
+.+++|+++.|.+.+++.|++.+... .-+..++|+||+|+||||+++++|..+
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHH
Confidence 56789999999999999888765431 123578999999999999999999854
No 456
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.3e-07 Score=68.98 Aligned_cols=55 Identities=22% Similarity=0.376 Sum_probs=44.3
Q ss_pred cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
+.+++|+++.|.+.++..|+..+... .-+..++|+||+|+||||++++++..+.+
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 45789999999999999888776421 11335799999999999999999998765
No 457
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.56 E-value=3.7e-07 Score=55.15 Aligned_cols=36 Identities=61% Similarity=1.042 Sum_probs=28.8
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhh---CccEEEEccc
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQT---SATFLRVVGS 77 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~---~~~~~~i~~~ 77 (102)
.+..+.|+||+|+|||++++.++... ......+...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~ 56 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence 56789999999999999999999987 4445555443
No 458
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.3e-07 Score=69.57 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=44.1
Q ss_pred cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
+.+++|+++.|.+.+++.|+..+... ..+..++|+||+|+||||++++++..+.
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46789999999999999888876531 1234569999999999999999998764
No 459
>KOG0989|consensus
Probab=98.56 E-value=1.5e-07 Score=65.10 Aligned_cols=52 Identities=29% Similarity=0.398 Sum_probs=44.0
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
+++|+++.|.+.+++.++..+.. .-.-..+++||||+|||+.+++.++.+.+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 67899999999999998887643 12347899999999999999999998766
No 460
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.55 E-value=1.7e-07 Score=67.48 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=47.5
Q ss_pred ccCChHHHHHHHHHHhhhhcCChHHHHhc--CC-CCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321 10 KRGSLDVQIQEIKESVELPLTHPEYYEEM--GI-KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 79 (102)
Q Consensus 10 ~i~g~~~~~~~i~~~~~~~~~~~~~~~~~--~i-~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~ 79 (102)
.+.|.++.++.+...+..+++........ .+ .+...++|+||+|||||+++++|+..++.++..++...+
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l 144 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTL 144 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 37888988888876664333221110000 11 134679999999999999999999988877777665543
No 461
>KOG0927|consensus
Probab=98.55 E-value=5.3e-08 Score=71.46 Aligned_cols=40 Identities=33% Similarity=0.447 Sum_probs=35.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
+|++.....++++||||||||||++.+.+.+.|..|.+..
T Consensus 410 ~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~ 449 (614)
T KOG0927|consen 410 NFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSR 449 (614)
T ss_pred hcccCcccceeEecCCCCchhhhHHHHhhccccccccccc
Confidence 3667889999999999999999999999999998777654
No 462
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.55 E-value=8e-08 Score=62.60 Aligned_cols=28 Identities=32% Similarity=0.559 Sum_probs=25.8
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
.+|+.++|+||||||||||++.|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4789999999999999999999999875
No 463
>PRK08118 topology modulation protein; Reviewed
Probab=98.54 E-value=9e-08 Score=61.07 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=25.9
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSATFLRV 74 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i 74 (102)
.+.|+|||||||||+++.|+..++.+.+++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~l 32 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHL 32 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceec
Confidence 589999999999999999999887765444
No 464
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.54 E-value=7.3e-08 Score=64.34 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.7
Q ss_pred CceeEEECCCCCChhHHHHHHHhhh
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
+++++|+||||||||||+++|++++
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l 47 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVL 47 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999998653
No 465
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.54 E-value=1.4e-07 Score=61.78 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=25.3
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
..+..++|.||||||||||++.|++.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4577899999999999999999999874
No 466
>KOG0065|consensus
Probab=98.54 E-value=3.4e-08 Score=78.25 Aligned_cols=69 Identities=23% Similarity=0.233 Sum_probs=47.7
Q ss_pred CChHHHHhcC--CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc-hHHHHHHccchhhh
Q psy16321 30 THPEYYEEMG--IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD-GPKLVRVALVPEVR 100 (102)
Q Consensus 30 ~~~~~~~~~~--i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~q~~ 100 (102)
.+.+++.+.+ +.||...+|.|+||+|||||++.||+-. +.|.|.++-.++..... ..-++++|||.|+.
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~--t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~D 873 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK--TGGYIEGDILISGFPKDQETFARVSGYVEQQD 873 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCc--ccceEEeEEEECCeeCchhhhccccceeeccc
Confidence 3344555544 6789999999999999999999999854 34455544333333322 45567899999874
No 467
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.53 E-value=2.3e-07 Score=66.16 Aligned_cols=60 Identities=33% Similarity=0.505 Sum_probs=43.1
Q ss_pred ccccccccCChHHHHHH---HHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 4 SYKALKKRGSLDVQIQE---IKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~---i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
.++++++++|.+..+.+ |+..+ .-..--...|.||||+||||++++|++..+..+..++.
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v-------------~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA 81 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAV-------------EAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA 81 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHH-------------hcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc
Confidence 36788999987765532 22222 11223357889999999999999999998888777654
No 468
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.52 E-value=1.4e-07 Score=62.77 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=28.1
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
.+...++|.||||||||||++.|++.+++..+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 45779999999999999999999999887644
No 469
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=2.2e-07 Score=68.45 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=44.5
Q ss_pred cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
+.+.+|+++.|.+.++..|+..+... ..+..++|+||+|+||||++++++..+.+
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45789999999999999887765321 12357899999999999999999998764
No 470
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.52 E-value=1.4e-07 Score=61.27 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.8
Q ss_pred eeEEECCCCCChhHHHHHHHhhhC
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
.++|.|||||||||++++|++++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999873
No 471
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.52 E-value=9.3e-08 Score=68.53 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=45.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc-----EEEE--ccchhhhhccCchHHH----HHHccchhhhc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT-----FLRV--VGSELIQKYLGDGPKL----VRVALVPEVRN 101 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~-----~~~i--~~~~~~~~~~~~~~~~----~~~~~~~q~~~ 101 (102)
+|++.+|+.++|+|.||||||..+.+|.++++.+ .+.+ .+.++.. ..+.+.+ .+++++||+|.
T Consensus 30 sf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~--~se~~lr~iRG~~I~MIFQEPM 103 (534)
T COG4172 30 SFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA--ASERQLRGVRGNKIGMIFQEPM 103 (534)
T ss_pred eeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc--CCHHHHhhhcccceEEEecccc
Confidence 5788999999999999999999999999998652 2333 3444432 2222222 25899999873
No 472
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=1.9e-07 Score=72.24 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=45.2
Q ss_pred cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
|.+.+|++|.|.+.+++.|++.+... .-...++|+||+|+||||++++++..+.+.
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 56789999999999999988776431 113456899999999999999999987653
No 473
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=2.3e-07 Score=69.92 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=45.3
Q ss_pred cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
+.+++|+++.|.+..++.|+..+... .....++|+||+|+||||+++++|..+.+
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56789999999999999888877421 12357899999999999999999998754
No 474
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.51 E-value=1.1e-07 Score=60.80 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.7
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
++.++|+|||||||||++++|+..+..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 357899999999999999999998654
No 475
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=2.3e-07 Score=70.23 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=45.8
Q ss_pred cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
|.+++|++|.|.+.+++.|++.+... ..+..++|+||+|+||||++++++..+.+
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 56889999999999999998877531 12356899999999999999999997654
No 476
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.49 E-value=2.6e-07 Score=64.49 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=26.7
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
.+++.++|+||||+||||++..||+.+.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 457899999999999999999999987654
No 477
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.49 E-value=8.6e-08 Score=62.58 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=25.3
Q ss_pred HhcCCCCC-ceeEEECCCCCChhHHHHHHH
Q psy16321 36 EEMGIKPP-KGVILYGPPGTGKTLLAKAVA 64 (102)
Q Consensus 36 ~~~~i~~~-~~~~l~Gp~GsGKStl~~~i~ 64 (102)
.++.+.++ +.++|.||||+|||||++.|+
T Consensus 20 ~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 20 LDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 35667787 479999999999999999998
No 478
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=2.9e-07 Score=68.08 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=44.8
Q ss_pred cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
|.+++|+++.|.+.+++.|+..+... ..+..++|+||+|+||||++++++..+.+
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 56789999999999999888876531 12345789999999999999999987754
No 479
>PRK07261 topology modulation protein; Provisional
Probab=98.47 E-value=2.1e-07 Score=59.55 Aligned_cols=30 Identities=23% Similarity=0.500 Sum_probs=25.2
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSATFLRV 74 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i 74 (102)
.++|+|+||||||||++.|+..++.+.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~ 31 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHL 31 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEec
Confidence 578999999999999999998876654443
No 480
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.47 E-value=1.4e-07 Score=60.24 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=23.4
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
|+.++|+|||||||||+++.|++..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 57899999999999999999999654
No 481
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=3.4e-07 Score=68.43 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=44.6
Q ss_pred cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
+.+++|++|.|.+.+++.|+..+... .-+..++|+||+|+||||++++++..+.+
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 56789999999999999988876421 12235789999999999999999997654
No 482
>KOG0054|consensus
Probab=98.46 E-value=9.2e-08 Score=76.52 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=35.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
++.+++|+.++++||.|||||+|+.+|.|+++...|.+...
T Consensus 541 n~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~ 581 (1381)
T KOG0054|consen 541 NFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVN 581 (1381)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEc
Confidence 45689999999999999999999999999999877766443
No 483
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.45 E-value=1.1e-07 Score=68.87 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=33.4
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
.+.+|+.++|+||||+|||||+++|+++..++.+.+..
T Consensus 161 ~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~l 198 (450)
T PRK06002 161 PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIAL 198 (450)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeee
Confidence 47889999999999999999999999998888665543
No 484
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.45 E-value=3.8e-07 Score=62.46 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=24.6
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
.++|.|+|||||||+++.|++++.+..+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~ 28 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLV 28 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCce
Confidence 4789999999999999999999877644
No 485
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.45 E-value=5e-07 Score=67.95 Aligned_cols=51 Identities=29% Similarity=0.478 Sum_probs=39.2
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
+.+|+++.|.+..++.+...+.. .....++|+|||||||||+++++.+...
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 56888898888877766544321 2345799999999999999999998763
No 486
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.45 E-value=1.9e-07 Score=64.87 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=32.2
Q ss_pred HHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 35 YEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 35 ~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
+-++.+..++.+++.||+||||||++++|++++++...
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~ 173 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDER 173 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcccc
Confidence 34556788999999999999999999999999876543
No 487
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=4.2e-07 Score=67.45 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=43.8
Q ss_pred cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
+.+.+|+++.|.+..++.|...+... .....++|+||+|+||||++++++..+.+
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45789999999999999888776431 11234789999999999999999997653
No 488
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=4e-07 Score=68.63 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=45.8
Q ss_pred cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
|..++|++|.|.+.+++.|++.+.... -...++|+||+|+||||++++++..+.+
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~gR------------LpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQQR------------LHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHhCC------------CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 567899999999999999988875321 1346789999999999999999998765
No 489
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.44 E-value=2.5e-07 Score=59.12 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=26.7
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRV 74 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i 74 (102)
+++.+.|.|+|||||||+++.|+.........+
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~ 33 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHF 33 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCcccc
Confidence 367899999999999999999998765544433
No 490
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.44 E-value=4e-07 Score=59.91 Aligned_cols=48 Identities=23% Similarity=0.391 Sum_probs=34.3
Q ss_pred ccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 8 LKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 8 ~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
|.+|.|.+..+..+.-... -+..++++||+|+|||++++.+..++++-
T Consensus 2 f~dI~GQe~aKrAL~iAAa---------------G~h~lLl~GppGtGKTmlA~~l~~lLP~l 49 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA---------------GGHHLLLIGPPGTGKTMLARRLPSLLPPL 49 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH---------------CC--EEEES-CCCTHHHHHHHHHHCS--C
T ss_pred hhhhcCcHHHHHHHHHHHc---------------CCCCeEEECCCCCCHHHHHHHHHHhCCCC
Confidence 6788998877776643321 24589999999999999999999998763
No 491
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=4.7e-07 Score=68.01 Aligned_cols=55 Identities=13% Similarity=0.260 Sum_probs=44.6
Q ss_pred cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
|.+++|+++.|.+.+++.|++.+... .-+..++|+||+|+||||++++++..+.+
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 56789999999999999888876532 11345789999999999999999987754
No 492
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.42 E-value=6.9e-07 Score=64.34 Aligned_cols=69 Identities=20% Similarity=0.284 Sum_probs=44.3
Q ss_pred ccCChHHHHHHHHHHhhhhcCChHHH--Hh--cCC-CCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321 10 KRGSLDVQIQEIKESVELPLTHPEYY--EE--MGI-KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78 (102)
Q Consensus 10 ~i~g~~~~~~~i~~~~~~~~~~~~~~--~~--~~i-~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~ 78 (102)
.+.|.++.++.+...+...++.-... .. -++ .....++|.||+|+|||+++++|+..++.++..++...
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~ 151 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATT 151 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhh
Confidence 35788888887776663322221110 00 011 12457999999999999999999998876665555443
No 493
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.42 E-value=5.9e-07 Score=61.85 Aligned_cols=52 Identities=27% Similarity=0.347 Sum_probs=41.8
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
.+++|+++.|.+++++.++..+... ....++|+||+|+||||++++++..+.
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3678999999999999888776421 112479999999999999999998753
No 494
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.42 E-value=4.4e-07 Score=57.27 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=28.3
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~ 73 (102)
+++..+.|+||+||||||+++.|+..++...+.
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d 34 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFID 34 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 467789999999999999999999988765543
No 495
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=5.2e-07 Score=68.97 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=44.6
Q ss_pred cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
|..++|++|.|.+.+++.|++.+... .-...++|+||+|+||||++++++..+.+
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 56789999999999999988876421 11345789999999999999999997754
No 496
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=4e-07 Score=68.67 Aligned_cols=55 Identities=15% Similarity=0.267 Sum_probs=44.5
Q ss_pred cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
|.+++|++|.|.+.+++.|+..+... .-...++|+||+|+||||++++++..+.+
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 56789999999999999888766431 11234789999999999999999998765
No 497
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.40 E-value=4.3e-07 Score=55.75 Aligned_cols=33 Identities=45% Similarity=0.688 Sum_probs=27.1
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
.++|+||+|+|||++++.++..+......+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~ 33 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCS 33 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-T
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEec
Confidence 378999999999999999999997766555443
No 498
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.39 E-value=2.1e-07 Score=61.47 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=21.0
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
++++|+||||+||||++++|...
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~ 48 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFV 48 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999999999843
No 499
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=7e-07 Score=66.82 Aligned_cols=54 Identities=17% Similarity=0.305 Sum_probs=43.8
Q ss_pred cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
+.+.+|+++.|.+..++.|+..+... ..+..++|+||+|+||||++++++..+.
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999888776431 1234578999999999999999998764
No 500
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=7.8e-07 Score=63.71 Aligned_cols=54 Identities=22% Similarity=0.299 Sum_probs=42.9
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
.+.+|++|.|.+.+++.|+..+... .-+..++|+||+|+||||++++++..+.+
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4678999999999998887766420 12335889999999999999999997754
Done!