Query psy16321
Match_columns 102
No_of_seqs 245 out of 1406
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 18:25:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16321.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16321hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 99.9 3E-23 1E-27 146.3 9.2 96 4-99 143-238 (405)
2 4b4t_I 26S protease regulatory 99.9 2.5E-22 8.7E-27 142.4 9.1 96 4-99 177-272 (437)
3 4b4t_L 26S protease subunit RP 99.9 3E-22 1E-26 142.6 9.4 96 4-99 176-271 (437)
4 4b4t_M 26S protease regulatory 99.9 2.8E-22 9.6E-27 142.6 8.8 95 4-98 176-270 (434)
5 4b4t_H 26S protease regulatory 99.9 3.6E-22 1.2E-26 142.7 8.7 96 4-99 204-299 (467)
6 4b4t_K 26S protease regulatory 99.9 8.2E-22 2.8E-26 140.1 9.4 96 4-99 167-262 (428)
7 2x8a_A Nuclear valosin-contain 99.8 5.8E-20 2E-24 124.0 7.4 94 4-99 5-98 (274)
8 3cf2_A TER ATPase, transitiona 99.8 1.1E-19 3.9E-24 136.8 6.0 96 4-99 199-294 (806)
9 3cf2_A TER ATPase, transitiona 99.7 2.9E-18 1E-22 129.3 6.6 96 4-99 472-567 (806)
10 3cf0_A Transitional endoplasmi 99.7 7.7E-18 2.6E-22 114.5 7.7 86 4-89 10-95 (301)
11 1xwi_A SKD1 protein; VPS4B, AA 99.7 1.6E-16 5.4E-21 109.2 7.7 91 4-95 7-98 (322)
12 3h4m_A Proteasome-activating n 99.6 9.5E-16 3.2E-20 102.8 9.3 87 4-90 12-98 (285)
13 1ypw_A Transitional endoplasmi 99.6 1.5E-16 5E-21 120.3 5.0 88 5-92 200-287 (806)
14 3eie_A Vacuolar protein sortin 99.6 8.2E-16 2.8E-20 105.3 7.8 90 4-94 13-102 (322)
15 1lv7_A FTSH; alpha/beta domain 99.6 1.7E-15 5.9E-20 100.4 7.6 86 4-90 7-92 (257)
16 1ixz_A ATP-dependent metallopr 99.6 4.1E-15 1.4E-19 98.5 9.2 93 4-99 11-103 (254)
17 2qp9_X Vacuolar protein sortin 99.6 1.5E-15 5E-20 105.5 6.6 89 4-93 46-134 (355)
18 3tif_A Uncharacterized ABC tra 99.6 4.6E-16 1.6E-20 102.9 3.5 65 37-101 25-93 (235)
19 2ff7_A Alpha-hemolysin translo 99.6 5.4E-16 1.9E-20 103.3 3.0 64 37-100 29-92 (247)
20 2ixe_A Antigen peptide transpo 99.6 8.4E-16 2.9E-20 103.6 3.8 64 37-100 39-102 (271)
21 2ce7_A Cell division protein F 99.6 1.1E-14 3.7E-19 104.8 9.5 91 4-95 11-101 (476)
22 3b9p_A CG5977-PA, isoform A; A 99.6 6.8E-15 2.3E-19 99.2 7.6 87 5-92 17-103 (297)
23 3hu3_A Transitional endoplasmi 99.6 9.8E-15 3.4E-19 105.3 8.6 90 6-95 201-290 (489)
24 3gfo_A Cobalt import ATP-bindi 99.6 4.5E-16 1.5E-20 105.2 1.3 64 37-100 28-93 (275)
25 1iy2_A ATP-dependent metallopr 99.6 1.9E-14 6.6E-19 96.5 9.1 93 4-99 35-127 (278)
26 2qi9_C Vitamin B12 import ATP- 99.6 1.2E-15 4.2E-20 101.7 3.0 63 37-100 20-82 (249)
27 4g1u_C Hemin import ATP-bindin 99.6 7.8E-16 2.7E-20 103.5 2.0 64 37-100 31-94 (266)
28 3nh6_A ATP-binding cassette SU 99.6 8E-16 2.7E-20 105.4 1.8 64 37-100 74-137 (306)
29 2qz4_A Paraplegin; AAA+, SPG7, 99.6 1.2E-14 4.2E-19 96.0 7.5 83 5-88 2-84 (262)
30 2dhr_A FTSH; AAA+ protein, hex 99.5 1.4E-14 4.6E-19 104.8 8.2 86 4-90 26-111 (499)
31 1ji0_A ABC transporter; ATP bi 99.5 1.2E-15 4.2E-20 101.1 2.3 64 37-100 26-90 (240)
32 2olj_A Amino acid ABC transpor 99.5 2E-15 7E-20 101.4 3.4 64 37-100 44-109 (263)
33 3tui_C Methionine import ATP-b 99.5 1.4E-15 4.7E-20 106.3 2.6 65 37-101 48-115 (366)
34 2pcj_A ABC transporter, lipopr 99.5 1.8E-15 6.1E-20 99.4 2.4 64 37-100 24-91 (224)
35 2ihy_A ABC transporter, ATP-bi 99.5 1.4E-15 4.9E-20 102.9 1.9 64 37-100 41-106 (279)
36 1vpl_A ABC transporter, ATP-bi 99.5 2.2E-15 7.6E-20 100.9 2.6 63 37-100 35-97 (256)
37 1g6h_A High-affinity branched- 99.5 2.3E-15 8E-20 100.6 2.4 64 37-100 27-91 (257)
38 3fvq_A Fe(3+) IONS import ATP- 99.5 1.3E-15 4.4E-20 106.2 0.7 64 37-100 24-89 (359)
39 2zan_A Vacuolar protein sortin 99.5 8E-15 2.7E-19 104.5 4.8 83 4-87 129-212 (444)
40 3rlf_A Maltose/maltodextrin im 99.5 1.8E-15 6.3E-20 106.2 1.4 62 37-100 23-84 (381)
41 1mv5_A LMRA, multidrug resista 99.5 6.9E-16 2.3E-20 102.5 -0.7 64 37-100 22-85 (243)
42 3d31_A Sulfate/molybdate ABC t 99.5 3.5E-15 1.2E-19 103.8 2.6 62 37-100 20-81 (348)
43 1ypw_A Transitional endoplasmi 99.5 2.8E-15 9.7E-20 113.3 2.1 89 4-92 472-560 (806)
44 1b0u_A Histidine permease; ABC 99.5 4.2E-15 1.4E-19 99.7 2.5 64 37-100 26-102 (262)
45 2ghi_A Transport protein; mult 99.5 4.6E-15 1.6E-19 99.4 2.7 63 37-100 40-102 (260)
46 3d8b_A Fidgetin-like protein 1 99.5 3.7E-14 1.3E-18 98.5 7.3 87 4-91 79-165 (357)
47 2yyz_A Sugar ABC transporter, 99.5 3.8E-15 1.3E-19 103.9 1.7 62 37-100 23-84 (359)
48 1sgw_A Putative ABC transporte 99.5 2.9E-15 1E-19 98.0 1.0 59 37-100 29-87 (214)
49 2yz2_A Putative ABC transporte 99.5 4.6E-15 1.6E-19 99.7 1.8 61 37-100 27-87 (266)
50 2it1_A 362AA long hypothetical 99.5 4.8E-15 1.6E-19 103.5 1.9 62 37-100 23-84 (362)
51 1z47_A CYSA, putative ABC-tran 99.5 3.7E-15 1.3E-19 103.9 1.2 62 37-100 35-96 (355)
52 3gd7_A Fusion complex of cysti 99.5 6.2E-15 2.1E-19 103.8 2.4 63 37-100 41-103 (390)
53 1v43_A Sugar-binding transport 99.5 4.9E-15 1.7E-19 103.8 1.7 62 37-100 31-92 (372)
54 2zu0_C Probable ATP-dependent 99.5 2E-14 6.7E-19 96.7 3.5 64 37-100 40-106 (267)
55 2d2e_A SUFC protein; ABC-ATPas 99.5 1.2E-14 4.2E-19 96.8 2.0 64 37-100 23-89 (250)
56 1oxx_K GLCV, glucose, ABC tran 99.5 3.2E-15 1.1E-19 104.1 -0.9 64 37-100 25-91 (353)
57 2onk_A Molybdate/tungstate ABC 99.5 7E-15 2.4E-19 97.6 0.8 61 37-100 19-79 (240)
58 1g29_1 MALK, maltose transport 99.5 6E-15 2E-19 103.3 0.4 64 37-100 23-90 (372)
59 3qf4_B Uncharacterized ABC tra 99.5 3.3E-14 1.1E-18 104.5 4.3 64 37-100 375-438 (598)
60 3vfd_A Spastin; ATPase, microt 99.5 1.4E-13 4.7E-18 96.4 7.0 86 5-91 111-196 (389)
61 2pze_A Cystic fibrosis transme 99.4 1.6E-14 5.6E-19 95.1 1.7 41 37-77 28-68 (229)
62 2cbz_A Multidrug resistance-as 99.4 1.5E-14 5.3E-19 95.7 1.4 41 37-77 25-65 (237)
63 3b60_A Lipid A export ATP-bind 99.4 3.4E-14 1.2E-18 104.1 2.9 64 37-100 363-426 (582)
64 2r62_A Cell division protease 99.4 6.3E-14 2.1E-18 93.2 3.7 76 4-80 6-81 (268)
65 2yl4_A ATP-binding cassette SU 99.4 3.7E-14 1.3E-18 104.1 2.8 64 37-100 364-427 (595)
66 3qf4_A ABC transporter, ATP-bi 99.4 3.7E-14 1.3E-18 104.1 2.7 64 37-100 363-426 (587)
67 4a82_A Cystic fibrosis transme 99.4 2.3E-14 8E-19 104.9 1.6 64 37-100 361-424 (578)
68 3b5x_A Lipid A export ATP-bind 99.4 3.5E-14 1.2E-18 104.0 2.3 64 37-100 363-426 (582)
69 2nq2_C Hypothetical ABC transp 99.4 1.7E-14 5.8E-19 96.4 -0.1 39 37-75 25-63 (253)
70 2pjz_A Hypothetical protein ST 99.4 5.9E-14 2E-18 94.3 2.0 59 37-100 25-84 (263)
71 2bbs_A Cystic fibrosis transme 99.4 6.2E-14 2.1E-18 95.3 1.7 41 37-77 58-98 (290)
72 3g5u_A MCG1178, multidrug resi 99.3 6.6E-13 2.3E-17 104.3 3.1 64 37-100 410-473 (1284)
73 4f4c_A Multidrug resistance pr 99.3 3.4E-13 1.2E-17 106.2 0.6 64 37-100 1099-1162(1321)
74 4f4c_A Multidrug resistance pr 99.3 1.1E-12 3.8E-17 103.3 3.0 64 37-100 438-501 (1321)
75 3g5u_A MCG1178, multidrug resi 99.3 8.7E-13 3E-17 103.7 1.8 64 37-100 1053-1116(1284)
76 1htw_A HI0065; nucleotide-bind 99.2 3.2E-12 1.1E-16 80.0 3.4 41 36-77 26-66 (158)
77 3b85_A Phosphate starvation-in 99.2 3.4E-13 1.2E-17 87.7 -2.5 56 41-100 20-75 (208)
78 1z6g_A Guanylate kinase; struc 99.2 1.1E-12 3.8E-17 85.5 -0.4 31 37-67 17-47 (218)
79 3b9q_A Chloroplast SRP recepto 99.2 4.5E-12 1.5E-16 86.6 2.1 39 37-75 94-132 (302)
80 2c9o_A RUVB-like 1; hexameric 99.2 6.9E-11 2.3E-15 84.4 8.3 77 5-89 33-111 (456)
81 1znw_A Guanylate kinase, GMP k 99.2 2E-12 6.7E-17 83.5 0.2 31 38-68 15-45 (207)
82 1g41_A Heat shock protein HSLU 99.2 4.5E-11 1.6E-15 85.4 7.0 78 9-86 15-94 (444)
83 3syl_A Protein CBBX; photosynt 99.2 8.1E-11 2.8E-15 79.4 6.9 81 8-89 29-120 (309)
84 3m6a_A ATP-dependent protease 99.2 3.4E-11 1.2E-15 87.8 5.3 65 8-79 80-144 (543)
85 1yqt_A RNAse L inhibitor; ATP- 99.1 3.4E-12 1.2E-16 93.0 -0.3 36 40-75 309-344 (538)
86 3bk7_A ABC transporter ATP-bin 99.1 3.8E-12 1.3E-16 93.9 -0.5 36 40-75 379-414 (607)
87 2og2_A Putative signal recogni 99.1 1.3E-11 4.6E-16 86.1 2.0 39 37-75 151-189 (359)
88 3tr0_A Guanylate kinase, GMP k 99.1 8.5E-12 2.9E-16 79.7 0.8 31 38-68 2-32 (205)
89 2yhs_A FTSY, cell division pro 99.1 1.6E-11 5.6E-16 88.6 0.8 39 37-75 287-325 (503)
90 2v9p_A Replication protein E1; 99.1 1E-10 3.4E-15 80.1 4.0 31 37-67 120-150 (305)
91 3ec2_A DNA replication protein 99.1 1.6E-10 5.6E-15 72.7 4.5 57 5-68 6-63 (180)
92 2eyu_A Twitching motility prot 99.0 8E-11 2.7E-15 78.8 3.1 42 34-75 16-58 (261)
93 2npi_A Protein CLP1; CLP1-PCF1 99.0 8.8E-12 3E-16 89.4 -1.7 37 36-72 131-167 (460)
94 2dpy_A FLII, flagellum-specifi 99.0 7E-11 2.4E-15 84.3 2.7 40 38-77 152-191 (438)
95 1zp6_A Hypothetical protein AT 99.0 2E-10 6.7E-15 72.6 4.5 41 39-79 5-45 (191)
96 1s96_A Guanylate kinase, GMP k 99.0 5.2E-11 1.8E-15 77.9 1.4 37 39-75 12-50 (219)
97 1rj9_A FTSY, signal recognitio 99.0 1.1E-10 3.7E-15 79.8 2.7 35 42-76 101-135 (304)
98 2iw3_A Elongation factor 3A; a 99.0 3.9E-11 1.3E-15 92.3 0.3 41 37-77 693-733 (986)
99 1tf7_A KAIC; homohexamer, hexa 99.0 6.8E-11 2.3E-15 85.7 1.2 61 37-100 32-97 (525)
100 1sxj_E Activator 1 40 kDa subu 99.0 4.2E-10 1.4E-14 77.1 4.7 56 4-71 9-65 (354)
101 3t15_A Ribulose bisphosphate c 99.0 5.5E-10 1.9E-14 75.6 5.0 57 39-95 32-88 (293)
102 3ozx_A RNAse L inhibitor; ATP 99.0 1.2E-10 4.1E-15 84.9 1.7 39 38-76 289-327 (538)
103 3sop_A Neuronal-specific septi 99.0 4.7E-11 1.6E-15 80.3 -0.4 53 45-100 4-56 (270)
104 1ye8_A Protein THEP1, hypothet 99.0 1.3E-10 4.5E-15 73.8 1.2 25 45-69 2-26 (178)
105 3asz_A Uridine kinase; cytidin 99.0 3E-10 1E-14 73.0 2.8 35 40-74 3-37 (211)
106 4gp7_A Metallophosphoesterase; 98.9 2.5E-10 8.5E-15 71.7 2.3 25 37-61 3-27 (171)
107 3aez_A Pantothenate kinase; tr 98.9 1.4E-10 4.7E-15 79.5 1.2 31 40-70 87-117 (312)
108 2ehv_A Hypothetical protein PH 98.9 3E-10 1E-14 74.2 2.7 28 39-66 26-55 (251)
109 1in4_A RUVB, holliday junction 98.9 1.8E-09 6.1E-14 74.2 6.6 60 4-71 20-79 (334)
110 4eun_A Thermoresistant glucoki 98.9 8.6E-10 3E-14 70.6 4.6 30 39-68 25-54 (200)
111 2i3b_A HCR-ntpase, human cance 98.9 3.5E-11 1.2E-15 77.2 -1.9 54 43-100 1-54 (189)
112 1sxj_A Activator 1 95 kDa subu 98.9 1.2E-09 4E-14 79.1 5.8 76 4-79 34-113 (516)
113 3c8u_A Fructokinase; YP_612366 98.9 1E-09 3.4E-14 70.7 4.9 38 40-77 19-59 (208)
114 2qm8_A GTPase/ATPase; G protei 98.9 1.6E-10 5.3E-15 79.9 1.1 64 37-100 49-116 (337)
115 1u0l_A Probable GTPase ENGC; p 98.9 1.1E-10 3.7E-15 79.5 -0.0 37 40-76 166-202 (301)
116 1yqt_A RNAse L inhibitor; ATP- 98.9 4E-10 1.4E-14 82.1 2.9 55 19-73 21-77 (538)
117 3euj_A Chromosome partition pr 98.9 2.6E-10 9.1E-15 82.2 1.9 40 37-77 24-63 (483)
118 3pfi_A Holliday junction ATP-d 98.9 3.4E-09 1.2E-13 72.3 7.2 66 5-78 25-90 (338)
119 3e70_C DPA, signal recognition 98.9 1.4E-09 4.9E-14 75.0 5.2 36 40-75 126-161 (328)
120 3lnc_A Guanylate kinase, GMP k 98.9 3.5E-10 1.2E-14 73.8 1.9 33 36-68 20-53 (231)
121 3ozx_A RNAse L inhibitor; ATP 98.9 3.4E-10 1.1E-14 82.6 1.9 35 40-74 22-56 (538)
122 2jeo_A Uridine-cytidine kinase 98.9 9E-10 3.1E-14 72.6 3.6 32 37-68 19-50 (245)
123 3j16_B RLI1P; ribosome recycli 98.9 4.7E-10 1.6E-14 82.8 2.2 36 39-74 99-134 (608)
124 1ofh_A ATP-dependent HSL prote 98.9 2.1E-09 7.1E-14 72.2 5.0 71 9-79 15-86 (310)
125 2j41_A Guanylate kinase; GMP, 98.9 1.6E-09 5.4E-14 69.0 4.3 33 39-71 2-34 (207)
126 2gza_A Type IV secretion syste 98.9 4.3E-10 1.5E-14 78.3 1.5 43 36-78 168-210 (361)
127 1lvg_A Guanylate kinase, GMP k 98.9 7.7E-10 2.6E-14 71.0 2.5 28 41-68 2-29 (198)
128 2pt7_A CAG-ALFA; ATPase, prote 98.9 2.5E-10 8.4E-15 78.8 0.2 41 37-77 165-205 (330)
129 3a00_A Guanylate kinase, GMP k 98.9 1.7E-09 5.9E-14 68.5 3.8 28 43-70 1-28 (186)
130 1sq5_A Pantothenate kinase; P- 98.9 2.8E-09 9.7E-14 72.6 5.1 36 41-76 78-115 (308)
131 2obl_A ESCN; ATPase, hydrolase 98.9 1.7E-09 5.6E-14 75.2 3.9 39 38-76 66-104 (347)
132 3u61_B DNA polymerase accessor 98.8 8.6E-09 3E-13 70.0 7.3 63 4-78 21-83 (324)
133 3bk7_A ABC transporter ATP-bin 98.8 9.7E-10 3.3E-14 81.1 2.5 35 39-73 113-147 (607)
134 4a74_A DNA repair and recombin 98.8 1.5E-09 5.2E-14 70.0 2.6 31 39-69 21-51 (231)
135 3hws_A ATP-dependent CLP prote 98.8 4.7E-09 1.6E-13 72.6 5.1 71 10-80 16-88 (363)
136 2f1r_A Molybdopterin-guanine d 98.8 1.5E-09 5.2E-14 68.5 2.4 35 44-78 3-40 (171)
137 1jbk_A CLPB protein; beta barr 98.8 1.3E-08 4.6E-13 63.2 6.7 50 5-67 18-67 (195)
138 2ewv_A Twitching motility prot 98.8 1.5E-09 5.2E-14 75.9 2.5 42 33-74 126-168 (372)
139 3uk6_A RUVB-like 2; hexameric 98.8 2.2E-08 7.4E-13 68.9 8.2 68 6-81 41-110 (368)
140 3vaa_A Shikimate kinase, SK; s 98.8 5E-09 1.7E-13 67.0 4.6 37 37-73 19-55 (199)
141 4e22_A Cytidylate kinase; P-lo 98.8 6.5E-10 2.2E-14 73.8 0.2 27 41-67 25-51 (252)
142 1svm_A Large T antigen; AAA+ f 98.8 9.7E-09 3.3E-13 72.0 6.0 34 37-70 163-196 (377)
143 1um8_A ATP-dependent CLP prote 98.8 1.6E-08 5.3E-13 70.3 7.0 69 10-79 22-108 (376)
144 1hqc_A RUVB; extended AAA-ATPa 98.8 9.9E-09 3.4E-13 69.4 5.7 66 4-77 7-72 (324)
145 1lw7_A Transcriptional regulat 98.8 3.3E-09 1.1E-13 73.7 2.9 36 36-71 161-198 (365)
146 1kgd_A CASK, peripheral plasma 98.8 6E-09 2E-13 65.7 3.8 28 41-68 3-30 (180)
147 3jvv_A Twitching mobility prot 98.8 2.7E-09 9.3E-14 74.3 2.4 37 34-70 114-150 (356)
148 1kag_A SKI, shikimate kinase I 98.7 8.4E-09 2.9E-13 64.1 4.3 29 43-71 4-32 (173)
149 1sxj_C Activator 1 40 kDa subu 98.7 1.5E-08 5.2E-13 69.5 5.8 53 4-69 20-72 (340)
150 2p65_A Hypothetical protein PF 98.7 2.1E-08 7.2E-13 62.3 5.9 50 5-67 18-67 (187)
151 2yv5_A YJEQ protein; hydrolase 98.7 7.7E-10 2.6E-14 75.4 -0.9 36 40-76 162-197 (302)
152 3j16_B RLI1P; ribosome recycli 98.7 5.9E-09 2E-13 77.0 3.6 31 43-73 378-408 (608)
153 1p9r_A General secretion pathw 98.7 2.6E-09 9E-14 75.8 1.4 34 41-74 165-198 (418)
154 1tq4_A IIGP1, interferon-induc 98.7 1.1E-09 3.8E-14 77.6 -0.7 31 45-75 71-101 (413)
155 3szr_A Interferon-induced GTP- 98.7 7.1E-10 2.4E-14 81.8 -1.7 56 45-100 47-106 (608)
156 3uie_A Adenylyl-sulfate kinase 98.7 1.1E-08 3.7E-13 65.4 4.0 32 37-68 19-50 (200)
157 3pvs_A Replication-associated 98.7 3.4E-08 1.2E-12 70.6 6.8 61 4-77 21-84 (447)
158 2w0m_A SSO2452; RECA, SSPF, un 98.7 3.2E-09 1.1E-13 68.4 1.3 31 39-69 19-49 (235)
159 3tau_A Guanylate kinase, GMP k 98.7 1.3E-08 4.5E-13 65.6 3.9 29 41-69 6-34 (208)
160 3k1j_A LON protease, ATP-depen 98.7 2.5E-08 8.5E-13 73.4 5.8 52 4-70 36-87 (604)
161 2oap_1 GSPE-2, type II secreti 98.7 4.5E-09 1.5E-13 76.2 1.7 38 38-75 255-292 (511)
162 2kjq_A DNAA-related protein; s 98.7 2.3E-08 7.9E-13 61.6 4.7 27 42-68 35-61 (149)
163 2chg_A Replication factor C sm 98.7 4.9E-08 1.7E-12 61.9 6.3 50 5-67 13-62 (226)
164 2qag_B Septin-6, protein NEDD5 98.7 1.2E-08 4.3E-13 72.5 3.4 33 35-67 32-66 (427)
165 1knq_A Gluconate kinase; ALFA/ 98.6 2.7E-08 9.4E-13 62.0 4.4 29 41-69 6-34 (175)
166 3cmw_A Protein RECA, recombina 98.6 1.4E-08 4.7E-13 81.7 3.7 63 5-67 1016-1106(1706)
167 1njg_A DNA polymerase III subu 98.6 7.5E-08 2.6E-12 61.6 6.6 53 4-68 18-70 (250)
168 2bbw_A Adenylate kinase 4, AK4 98.6 5.2E-09 1.8E-13 68.9 1.1 31 42-72 26-59 (246)
169 2bjv_A PSP operon transcriptio 98.6 6.8E-08 2.3E-12 64.0 6.2 62 6-78 3-67 (265)
170 1qhl_A Protein (cell division 98.6 4.3E-10 1.5E-14 74.0 -4.4 38 38-76 23-60 (227)
171 1sxj_D Activator 1 41 kDa subu 98.6 2.5E-08 8.5E-13 68.0 4.1 52 4-68 32-83 (353)
172 1cr0_A DNA primase/helicase; R 98.6 1.5E-08 5.1E-13 68.2 2.9 34 37-70 29-62 (296)
173 3kta_A Chromosome segregation 98.6 1.8E-08 6E-13 63.2 3.0 31 38-69 22-52 (182)
174 3ux8_A Excinuclease ABC, A sub 98.6 8.5E-09 2.9E-13 76.6 1.5 24 37-60 38-61 (670)
175 3ney_A 55 kDa erythrocyte memb 98.6 3.2E-08 1.1E-12 63.9 4.0 33 36-68 12-44 (197)
176 3nwj_A ATSK2; P loop, shikimat 98.6 2.6E-08 9E-13 66.3 3.3 37 37-73 39-78 (250)
177 1d2n_A N-ethylmaleimide-sensit 98.6 1.7E-07 5.9E-12 62.2 7.1 66 9-77 33-98 (272)
178 3cr8_A Sulfate adenylyltranfer 98.6 1.2E-08 4E-13 74.7 1.5 33 39-71 365-397 (552)
179 2bdt_A BH3686; alpha-beta prot 98.6 2.4E-08 8.1E-13 63.0 2.7 25 43-67 2-26 (189)
180 1t9h_A YLOQ, probable GTPase E 98.6 4.6E-09 1.6E-13 71.9 -0.8 38 39-76 169-206 (307)
181 2rcn_A Probable GTPase ENGC; Y 98.6 2.7E-08 9.2E-13 69.4 3.0 35 42-76 214-249 (358)
182 3n70_A Transport activator; si 98.6 1.1E-07 3.9E-12 57.9 5.5 57 10-78 2-61 (145)
183 4aby_A DNA repair protein RECN 98.6 4E-09 1.4E-13 73.9 -1.2 31 37-68 55-85 (415)
184 1iqp_A RFCS; clamp loader, ext 98.6 1.3E-07 4.5E-12 63.7 6.3 51 4-67 20-70 (327)
185 1n0w_A DNA repair protein RAD5 98.6 3.3E-08 1.1E-12 64.2 3.2 28 39-66 20-47 (243)
186 4fcw_A Chaperone protein CLPB; 98.6 2.2E-07 7.6E-12 62.4 7.2 63 9-77 17-84 (311)
187 1qhx_A CPT, protein (chloramph 98.5 7.9E-08 2.7E-12 59.9 4.5 33 43-75 3-35 (178)
188 2r44_A Uncharacterized protein 98.5 1.3E-07 4.3E-12 64.5 5.8 54 8-76 26-79 (331)
189 1rz3_A Hypothetical protein rb 98.5 3.8E-08 1.3E-12 63.0 2.9 31 40-70 19-49 (201)
190 1pzn_A RAD51, DNA repair and r 98.5 3.9E-08 1.3E-12 68.2 3.0 30 38-67 126-155 (349)
191 1gvn_B Zeta; postsegregational 98.5 2.5E-07 8.5E-12 62.5 6.9 37 41-77 31-67 (287)
192 2chq_A Replication factor C sm 98.5 1.2E-07 4.2E-12 63.6 5.4 51 4-67 12-62 (319)
193 2qby_A CDC6 homolog 1, cell di 98.5 1.7E-07 5.7E-12 64.2 6.1 60 8-76 19-84 (386)
194 1g8p_A Magnesium-chelatase 38 98.5 9.3E-08 3.2E-12 65.2 4.8 52 4-68 19-70 (350)
195 2v1u_A Cell division control p 98.5 2.2E-07 7.6E-12 63.7 6.7 61 8-77 18-87 (387)
196 3co5_A Putative two-component 98.5 3.1E-08 1.1E-12 60.3 2.1 58 10-79 5-62 (143)
197 1cke_A CK, MSSA, protein (cyti 98.5 9.5E-08 3.2E-12 61.7 4.4 28 43-70 5-32 (227)
198 2iw3_A Elongation factor 3A; a 98.5 2.7E-08 9.3E-13 76.8 2.1 29 37-65 455-483 (986)
199 1jr3_A DNA polymerase III subu 98.5 2.6E-07 8.9E-12 63.4 6.6 54 4-69 11-64 (373)
200 2qby_B CDC6 homolog 3, cell di 98.5 2.5E-07 8.5E-12 63.7 6.5 50 9-67 20-69 (384)
201 1vma_A Cell division protein F 98.5 5.9E-08 2E-12 66.3 3.1 32 39-70 100-131 (306)
202 1y63_A LMAJ004144AAA protein; 98.5 1.2E-07 4E-12 59.9 4.2 36 37-72 4-40 (184)
203 3pxg_A Negative regulator of g 98.5 2E-07 6.9E-12 66.8 5.8 50 5-67 176-225 (468)
204 1fnn_A CDC6P, cell division co 98.5 3.1E-07 1.1E-11 63.2 6.6 58 9-75 17-80 (389)
205 2pez_A Bifunctional 3'-phospho 98.5 1.5E-07 5.2E-12 58.9 4.5 35 41-75 3-40 (179)
206 3bos_A Putative DNA replicatio 98.5 5.4E-07 1.8E-11 58.0 7.2 50 6-68 25-77 (242)
207 2p5t_B PEZT; postsegregational 98.5 1.8E-07 6.1E-12 61.9 5.0 39 40-78 29-67 (253)
208 2qt1_A Nicotinamide riboside k 98.5 1.2E-07 4E-12 60.7 4.0 29 39-67 17-45 (207)
209 1pui_A ENGB, probable GTP-bind 98.5 2.8E-08 9.5E-13 63.3 1.1 33 35-67 18-50 (210)
210 1l8q_A Chromosomal replication 98.5 4.7E-07 1.6E-11 61.5 7.1 38 42-79 36-76 (324)
211 1nij_A Hypothetical protein YJ 98.5 4.4E-08 1.5E-12 67.0 1.7 24 44-67 5-28 (318)
212 2cvh_A DNA repair and recombin 98.4 1.3E-07 4.5E-12 60.5 3.6 27 39-65 16-42 (220)
213 2vp4_A Deoxynucleoside kinase; 98.4 8.6E-08 2.9E-12 62.6 2.7 28 39-66 16-43 (230)
214 3pxi_A Negative regulator of g 98.4 3.1E-07 1.1E-11 69.0 5.8 50 5-67 176-225 (758)
215 1odf_A YGR205W, hypothetical 3 98.4 6.6E-08 2.2E-12 65.6 2.0 29 41-69 29-57 (290)
216 2qor_A Guanylate kinase; phosp 98.4 1.9E-07 6.4E-12 59.8 3.9 29 40-68 9-37 (204)
217 3kb2_A SPBC2 prophage-derived 98.4 2.3E-07 8E-12 57.2 4.2 28 45-72 3-30 (173)
218 3t61_A Gluconokinase; PSI-biol 98.4 2.7E-07 9.1E-12 58.8 4.6 29 43-71 18-46 (202)
219 1qvr_A CLPB protein; coiled co 98.4 6.7E-07 2.3E-11 68.1 7.3 62 5-79 166-237 (854)
220 2o8b_B DNA mismatch repair pro 98.4 9.2E-08 3.1E-12 74.2 2.6 25 43-68 789-813 (1022)
221 2rhm_A Putative kinase; P-loop 98.4 3.3E-07 1.1E-11 57.6 4.5 33 41-73 3-35 (193)
222 3ux8_A Excinuclease ABC, A sub 98.4 4.4E-08 1.5E-12 72.8 0.4 28 37-64 342-369 (670)
223 3trf_A Shikimate kinase, SK; a 98.4 3.4E-07 1.2E-11 57.4 4.4 31 43-73 5-35 (185)
224 1sxj_B Activator 1 37 kDa subu 98.4 5.7E-07 2E-11 60.4 5.8 50 5-67 17-66 (323)
225 1r6b_X CLPA protein; AAA+, N-t 98.4 1E-06 3.5E-11 66.1 7.7 49 6-67 183-231 (758)
226 3tqc_A Pantothenate kinase; bi 98.4 2.5E-07 8.6E-12 63.7 3.8 25 44-68 93-117 (321)
227 3iij_A Coilin-interacting nucl 98.4 5.1E-07 1.8E-11 56.4 4.9 33 40-72 8-40 (180)
228 1nlf_A Regulatory protein REPA 98.4 1.6E-07 5.4E-12 62.8 2.6 30 39-68 26-55 (279)
229 1via_A Shikimate kinase; struc 98.4 3.7E-07 1.3E-11 56.9 4.2 29 45-73 6-34 (175)
230 1jjv_A Dephospho-COA kinase; P 98.4 3.3E-07 1.1E-11 58.4 4.0 25 45-70 4-28 (206)
231 1w1w_A Structural maintenance 98.4 2.5E-07 8.6E-12 65.4 3.7 34 38-71 21-54 (430)
232 2w58_A DNAI, primosome compone 98.4 9.8E-07 3.4E-11 56.0 6.2 25 44-68 55-79 (202)
233 2ze6_A Isopentenyl transferase 98.4 3.5E-07 1.2E-11 60.6 4.1 30 45-74 3-32 (253)
234 3cm0_A Adenylate kinase; ATP-b 98.4 3.2E-07 1.1E-11 57.5 3.7 29 42-70 3-31 (186)
235 1zu4_A FTSY; GTPase, signal re 98.4 1.4E-07 4.6E-12 64.9 2.0 33 38-70 100-132 (320)
236 2if2_A Dephospho-COA kinase; a 98.3 3.4E-07 1.1E-11 58.3 3.7 26 45-71 3-28 (204)
237 3thx_B DNA mismatch repair pro 98.3 2.2E-07 7.4E-12 71.5 2.6 29 38-66 668-696 (918)
238 1wb9_A DNA mismatch repair pro 98.3 3.3E-07 1.1E-11 69.6 3.5 27 41-67 605-631 (800)
239 3umf_A Adenylate kinase; rossm 98.3 6.7E-07 2.3E-11 58.4 4.4 40 39-80 25-64 (217)
240 1m7g_A Adenylylsulfate kinase; 98.3 5.6E-07 1.9E-11 57.8 3.9 32 37-68 19-50 (211)
241 2yvu_A Probable adenylyl-sulfa 98.3 6.6E-07 2.3E-11 56.2 4.0 31 39-69 9-39 (186)
242 1kht_A Adenylate kinase; phosp 98.3 6.2E-07 2.1E-11 56.1 3.8 26 43-68 3-28 (192)
243 2dr3_A UPF0273 protein PH0284; 98.3 1.3E-07 4.3E-12 61.5 0.5 28 39-66 19-46 (247)
244 2c95_A Adenylate kinase 1; tra 98.3 8.3E-07 2.8E-11 55.8 4.2 31 42-72 8-38 (196)
245 3hr8_A Protein RECA; alpha and 98.3 3.5E-07 1.2E-11 63.8 2.7 39 31-69 46-87 (356)
246 1ls1_A Signal recognition part 98.3 6.6E-07 2.3E-11 60.7 3.9 29 42-70 97-125 (295)
247 2o5v_A DNA replication and rep 98.3 3.7E-07 1.3E-11 63.6 2.7 30 37-67 21-50 (359)
248 1tev_A UMP-CMP kinase; ploop, 98.3 9.6E-07 3.3E-11 55.3 4.3 29 43-71 3-31 (196)
249 3lw7_A Adenylate kinase relate 98.2 9.4E-07 3.2E-11 54.2 4.0 27 45-72 3-29 (179)
250 2iyv_A Shikimate kinase, SK; t 98.2 1.1E-06 3.8E-11 55.0 4.3 30 44-73 3-32 (184)
251 1r6b_X CLPA protein; AAA+, N-t 98.2 3.7E-06 1.3E-10 63.1 7.8 62 10-79 459-524 (758)
252 1ly1_A Polynucleotide kinase; 98.2 7.9E-07 2.7E-11 55.1 3.5 22 44-65 3-24 (181)
253 1oix_A RAS-related protein RAB 98.2 8.9E-07 3.1E-11 55.9 3.8 25 45-69 31-55 (191)
254 1zuh_A Shikimate kinase; alpha 98.2 1.3E-06 4.3E-11 54.0 4.4 30 44-73 8-37 (168)
255 3qf7_A RAD50; ABC-ATPase, ATPa 98.2 4.8E-07 1.6E-11 63.0 2.7 29 37-66 18-46 (365)
256 3pxi_A Negative regulator of g 98.2 4.1E-06 1.4E-10 63.0 7.8 68 9-80 491-561 (758)
257 2cdn_A Adenylate kinase; phosp 98.2 1.6E-06 5.3E-11 55.1 4.7 32 42-73 19-50 (201)
258 1aky_A Adenylate kinase; ATP:A 98.2 1.4E-06 4.9E-11 56.1 4.6 31 42-72 3-33 (220)
259 3te6_A Regulatory protein SIR3 98.2 6.6E-07 2.2E-11 61.5 3.1 27 41-67 43-69 (318)
260 4eaq_A DTMP kinase, thymidylat 98.2 1.1E-06 3.9E-11 57.5 4.0 29 41-69 24-52 (229)
261 1tf7_A KAIC; homohexamer, hexa 98.2 4.4E-07 1.5E-11 65.8 2.2 31 39-69 277-307 (525)
262 1tue_A Replication protein E1; 98.2 2.6E-06 8.8E-11 55.4 5.6 30 39-68 54-83 (212)
263 1q3t_A Cytidylate kinase; nucl 98.2 1.6E-06 5.5E-11 56.6 4.7 32 39-70 12-43 (236)
264 1qf9_A UMP/CMP kinase, protein 98.2 1.7E-06 5.7E-11 54.1 4.5 30 43-72 6-35 (194)
265 2vli_A Antibiotic resistance p 98.2 1.1E-06 3.6E-11 54.8 3.6 31 42-72 4-34 (183)
266 2bwj_A Adenylate kinase 5; pho 98.2 1.3E-06 4.4E-11 55.1 4.0 31 42-72 11-41 (199)
267 1ewq_A DNA mismatch repair pro 98.2 7.8E-07 2.7E-11 67.3 3.4 29 38-67 572-600 (765)
268 2plr_A DTMP kinase, probable t 98.2 1.2E-06 4E-11 55.7 3.8 27 43-69 4-30 (213)
269 3thx_A DNA mismatch repair pro 98.2 6.5E-07 2.2E-11 69.0 2.9 27 38-64 657-683 (934)
270 1e69_A Chromosome segregation 98.2 7E-07 2.4E-11 61.0 2.9 30 37-67 19-48 (322)
271 1ojl_A Transcriptional regulat 98.2 2.4E-06 8.1E-11 58.1 5.5 57 10-77 3-62 (304)
272 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 1.3E-06 4.4E-11 61.6 4.2 27 39-65 16-42 (392)
273 1e6c_A Shikimate kinase; phosp 98.2 1.6E-06 5.4E-11 53.6 4.2 29 44-72 3-31 (173)
274 2jaq_A Deoxyguanosine kinase; 98.2 1.4E-06 4.9E-11 54.9 3.9 26 45-70 2-27 (205)
275 3fb4_A Adenylate kinase; psych 98.2 1.6E-06 5.5E-11 55.5 4.2 28 45-72 2-29 (216)
276 1udx_A The GTP-binding protein 98.2 5E-07 1.7E-11 64.1 1.9 30 37-66 151-180 (416)
277 3r20_A Cytidylate kinase; stru 98.2 1.8E-06 6.3E-11 56.9 4.4 29 43-71 9-37 (233)
278 3dl0_A Adenylate kinase; phosp 98.2 1.7E-06 5.8E-11 55.5 4.2 28 45-72 2-29 (216)
279 1zd8_A GTP:AMP phosphotransfer 98.2 1.7E-06 5.8E-11 56.1 4.0 31 42-72 6-36 (227)
280 2px0_A Flagellar biosynthesis 98.2 1.2E-06 4.1E-11 59.5 3.4 29 41-69 103-131 (296)
281 2v54_A DTMP kinase, thymidylat 98.2 2.7E-06 9.4E-11 53.8 4.8 26 42-67 3-28 (204)
282 1ukz_A Uridylate kinase; trans 98.2 2.7E-06 9.3E-11 54.0 4.8 31 42-72 14-44 (203)
283 3tlx_A Adenylate kinase 2; str 98.2 2.3E-06 8E-11 56.3 4.5 32 41-72 27-58 (243)
284 2z4s_A Chromosomal replication 98.1 1.9E-06 6.7E-11 61.3 4.4 37 43-79 130-171 (440)
285 2ga8_A Hypothetical 39.9 kDa p 98.1 4.7E-06 1.6E-10 58.1 6.1 32 40-71 19-52 (359)
286 3sr0_A Adenylate kinase; phosp 98.1 2.2E-06 7.6E-11 55.4 4.1 34 45-80 2-35 (206)
287 1vht_A Dephospho-COA kinase; s 98.1 2.6E-06 9E-11 54.7 4.5 28 43-71 4-31 (218)
288 1f2t_A RAD50 ABC-ATPase; DNA d 98.1 1.6E-06 5.5E-11 53.3 3.3 25 43-67 23-47 (149)
289 2pt5_A Shikimate kinase, SK; a 98.1 2.7E-06 9.3E-11 52.3 4.3 28 45-72 2-29 (168)
290 3lda_A DNA repair protein RAD5 98.1 1.9E-06 6.4E-11 60.9 3.9 26 39-64 174-199 (400)
291 3ake_A Cytidylate kinase; CMP 98.1 2.5E-06 8.6E-11 54.1 4.2 28 45-72 4-31 (208)
292 1zak_A Adenylate kinase; ATP:A 98.1 1.8E-06 6E-11 55.8 3.5 29 42-70 4-32 (222)
293 2qgz_A Helicase loader, putati 98.1 6.2E-06 2.1E-10 56.1 6.3 27 42-68 151-177 (308)
294 1uf9_A TT1252 protein; P-loop, 98.1 2.6E-06 8.9E-11 53.8 4.1 25 42-66 7-31 (203)
295 2f9l_A RAB11B, member RAS onco 98.1 1.6E-06 5.5E-11 54.8 3.1 23 45-67 7-29 (199)
296 1nks_A Adenylate kinase; therm 98.1 1.5E-06 5.1E-11 54.3 2.9 24 45-68 3-26 (194)
297 1qvr_A CLPB protein; coiled co 98.1 6.1E-06 2.1E-10 62.9 6.7 66 8-79 557-627 (854)
298 2ffh_A Protein (FFH); SRP54, s 98.1 2.6E-06 8.8E-11 60.7 4.3 30 41-70 96-125 (425)
299 2wwf_A Thymidilate kinase, put 98.1 2E-06 6.8E-11 54.8 3.2 28 41-68 8-35 (212)
300 1nn5_A Similar to deoxythymidy 98.1 2.3E-06 7.8E-11 54.5 3.4 28 41-68 7-34 (215)
301 1ak2_A Adenylate kinase isoenz 98.1 4.4E-06 1.5E-10 54.4 4.7 32 42-73 15-46 (233)
302 1gtv_A TMK, thymidylate kinase 98.1 7.8E-07 2.7E-11 56.7 1.1 25 45-69 2-26 (214)
303 1ex7_A Guanylate kinase; subst 98.1 2.6E-06 8.8E-11 54.4 3.3 25 44-68 2-26 (186)
304 2www_A Methylmalonic aciduria 98.1 1.5E-06 5.1E-11 60.2 2.4 28 42-69 73-100 (349)
305 3a4m_A L-seryl-tRNA(SEC) kinas 98.1 5.3E-06 1.8E-10 55.0 4.9 25 42-66 3-27 (260)
306 3be4_A Adenylate kinase; malar 98.1 3.5E-06 1.2E-10 54.3 3.9 31 43-73 5-35 (217)
307 2z0h_A DTMP kinase, thymidylat 98.0 5E-06 1.7E-10 52.2 4.4 23 45-67 2-24 (197)
308 2pbr_A DTMP kinase, thymidylat 98.0 5.2E-06 1.8E-10 51.9 4.4 23 45-67 2-24 (195)
309 2qnr_A Septin-2, protein NEDD5 98.0 1.5E-06 5.2E-11 59.0 1.9 28 45-72 20-48 (301)
310 3nbx_X ATPase RAVA; AAA+ ATPas 98.0 3.5E-06 1.2E-10 61.0 3.8 29 41-69 39-67 (500)
311 1e4v_A Adenylate kinase; trans 98.0 4.3E-06 1.5E-10 53.7 3.8 29 45-73 2-30 (214)
312 2xb4_A Adenylate kinase; ATP-b 98.0 5.5E-06 1.9E-10 53.7 4.2 26 45-70 2-27 (223)
313 2vf7_A UVRA2, excinuclease ABC 98.0 5.2E-07 1.8E-11 68.8 -0.9 31 37-67 517-548 (842)
314 2grj_A Dephospho-COA kinase; T 98.0 6.1E-06 2.1E-10 52.8 4.1 31 43-73 12-42 (192)
315 2qtf_A Protein HFLX, GTP-bindi 98.0 6.4E-06 2.2E-10 57.4 4.5 24 45-68 181-204 (364)
316 1j8m_F SRP54, signal recogniti 98.0 3.4E-06 1.2E-10 57.3 2.9 27 43-69 98-124 (297)
317 3crm_A TRNA delta(2)-isopenten 98.0 6.5E-06 2.2E-10 56.7 4.3 31 44-74 6-36 (323)
318 2qag_C Septin-7; cell cycle, c 98.0 3.2E-06 1.1E-10 60.0 2.7 23 46-68 34-56 (418)
319 2p67_A LAO/AO transport system 98.0 2.5E-06 8.5E-11 58.8 2.1 31 38-68 51-81 (341)
320 1np6_A Molybdopterin-guanine d 98.0 5.3E-06 1.8E-10 52.3 3.4 26 43-68 6-31 (174)
321 2gj8_A MNME, tRNA modification 98.0 4.1E-06 1.4E-10 51.9 2.7 26 42-67 3-28 (172)
322 1uj2_A Uridine-cytidine kinase 98.0 6.3E-06 2.2E-10 54.3 3.8 29 42-70 21-49 (252)
323 3qks_A DNA double-strand break 97.9 6.5E-06 2.2E-10 52.9 3.5 25 43-67 23-47 (203)
324 3qkt_A DNA double-strand break 97.9 5.8E-06 2E-10 56.9 3.3 23 43-65 23-45 (339)
325 2wji_A Ferrous iron transport 97.9 6E-06 2.1E-10 50.7 2.9 23 44-66 4-26 (165)
326 2ygr_A Uvrabc system protein A 97.9 1.7E-06 5.7E-11 67.0 0.3 28 37-64 662-689 (993)
327 2fna_A Conserved hypothetical 97.9 3.8E-05 1.3E-09 51.9 6.8 54 7-77 11-64 (357)
328 3a8t_A Adenylate isopentenyltr 97.9 1.1E-05 3.7E-10 55.9 4.0 32 42-73 39-70 (339)
329 2h92_A Cytidylate kinase; ross 97.9 1.4E-05 4.8E-10 51.2 4.3 30 43-72 3-32 (219)
330 3zvl_A Bifunctional polynucleo 97.9 8.8E-06 3E-10 57.5 3.6 28 42-69 257-284 (416)
331 2zr9_A Protein RECA, recombina 97.9 6.4E-06 2.2E-10 57.1 2.6 29 39-67 57-85 (349)
332 2f6r_A COA synthase, bifunctio 97.9 1.3E-05 4.5E-10 53.8 4.0 27 43-70 75-101 (281)
333 3kl4_A SRP54, signal recogniti 97.9 6.3E-06 2.1E-10 58.8 2.5 28 42-69 96-123 (433)
334 1a7j_A Phosphoribulokinase; tr 97.9 6.8E-06 2.3E-10 55.6 2.6 26 43-68 5-30 (290)
335 2r6f_A Excinuclease ABC subuni 97.9 1.7E-06 5.7E-11 66.8 -0.5 28 37-64 644-671 (972)
336 3f9v_A Minichromosome maintena 97.9 3.5E-06 1.2E-10 62.1 1.2 27 44-70 328-354 (595)
337 2zej_A Dardarin, leucine-rich 97.9 7.2E-06 2.5E-10 51.2 2.5 22 45-66 4-25 (184)
338 1v5w_A DMC1, meiotic recombina 97.8 1.6E-05 5.5E-10 54.8 4.4 37 30-66 107-145 (343)
339 1ltq_A Polynucleotide kinase; 97.8 9.5E-06 3.2E-10 54.4 3.2 23 44-66 3-25 (301)
340 3d3q_A TRNA delta(2)-isopenten 97.8 1.3E-05 4.4E-10 55.6 3.9 28 44-71 8-35 (340)
341 2wjg_A FEOB, ferrous iron tran 97.8 1E-05 3.6E-10 50.2 3.0 23 44-66 8-30 (188)
342 1u0j_A DNA replication protein 97.8 1.4E-05 4.6E-10 53.8 3.7 27 41-67 102-128 (267)
343 3ice_A Transcription terminati 97.8 2.3E-05 8E-10 55.5 4.7 32 36-67 167-198 (422)
344 1xjc_A MOBB protein homolog; s 97.8 1.5E-05 5.1E-10 50.2 3.4 25 44-68 5-29 (169)
345 1ega_A Protein (GTP-binding pr 97.8 9.8E-06 3.4E-10 54.9 2.6 24 43-66 8-31 (301)
346 3exa_A TRNA delta(2)-isopenten 97.8 2.2E-05 7.5E-10 54.0 4.1 30 43-72 3-32 (322)
347 3foz_A TRNA delta(2)-isopenten 97.8 2.4E-05 8.1E-10 53.7 4.2 32 43-74 10-41 (316)
348 2ged_A SR-beta, signal recogni 97.8 4.5E-05 1.5E-09 47.5 5.2 26 42-67 47-72 (193)
349 2dy1_A Elongation factor G; tr 97.8 6.9E-06 2.4E-10 61.2 1.5 32 38-69 4-35 (665)
350 3pih_A Uvrabc system protein A 97.8 9.1E-06 3.1E-10 62.6 2.1 24 37-60 604-627 (916)
351 1w5s_A Origin recognition comp 97.7 4.7E-05 1.6E-09 52.7 5.5 53 9-68 22-77 (412)
352 2ohf_A Protein OLA1, GTP-bindi 97.7 3.3E-05 1.1E-09 54.6 4.7 27 40-66 19-45 (396)
353 2qen_A Walker-type ATPase; unk 97.7 7.7E-05 2.6E-09 50.3 6.4 47 7-68 10-56 (350)
354 2qmh_A HPR kinase/phosphorylas 97.7 2.1E-05 7.3E-10 50.9 3.3 27 42-68 33-59 (205)
355 2z43_A DNA repair and recombin 97.7 4.1E-05 1.4E-09 52.3 4.9 38 30-67 92-131 (324)
356 3gmt_A Adenylate kinase; ssgci 97.7 2.7E-05 9.3E-10 51.2 3.7 29 44-72 9-37 (230)
357 2r6a_A DNAB helicase, replicat 97.7 3E-05 1E-09 55.3 3.7 29 39-67 199-227 (454)
358 3lxx_A GTPase IMAP family memb 97.7 2.5E-05 8.4E-10 50.8 3.1 24 44-67 30-53 (239)
359 3k53_A Ferrous iron transport 97.7 2E-05 7E-10 52.3 2.6 24 44-67 4-27 (271)
360 3tqf_A HPR(Ser) kinase; transf 97.7 2.4E-05 8.3E-10 49.6 2.8 24 42-65 15-38 (181)
361 2vhj_A Ntpase P4, P4; non- hyd 97.7 1.3E-05 4.5E-10 55.3 1.6 28 39-66 119-146 (331)
362 3eph_A TRNA isopentenyltransfe 97.7 3.5E-05 1.2E-09 54.6 3.7 30 43-72 2-31 (409)
363 1z2a_A RAS-related protein RAB 97.6 3.1E-05 1.1E-09 46.9 3.0 22 45-66 7-28 (168)
364 2zts_A Putative uncharacterize 97.6 2.6E-05 9.1E-10 50.4 2.8 26 39-64 26-51 (251)
365 1x6v_B Bifunctional 3'-phospho 97.6 5.3E-05 1.8E-09 56.3 4.6 35 42-76 51-88 (630)
366 2dyk_A GTP-binding protein; GT 97.6 3.6E-05 1.2E-09 46.3 3.2 22 45-66 3-24 (161)
367 4edh_A DTMP kinase, thymidylat 97.6 4.1E-05 1.4E-09 49.6 3.5 27 42-68 5-31 (213)
368 3dm5_A SRP54, signal recogniti 97.6 5.3E-05 1.8E-09 54.2 4.3 27 42-68 99-125 (443)
369 3v9p_A DTMP kinase, thymidylat 97.6 3.8E-05 1.3E-09 50.4 3.3 28 41-68 23-50 (227)
370 3bh0_A DNAB-like replicative h 97.6 4E-05 1.4E-09 52.2 3.5 28 39-66 64-91 (315)
371 1kao_A RAP2A; GTP-binding prot 97.6 3.7E-05 1.3E-09 46.3 3.0 22 45-66 5-26 (167)
372 2i1q_A DNA repair and recombin 97.6 3.5E-05 1.2E-09 52.4 3.2 36 31-66 84-121 (322)
373 2nzj_A GTP-binding protein REM 97.6 3.4E-05 1.2E-09 47.1 2.8 22 45-66 6-27 (175)
374 2lkc_A Translation initiation 97.6 5.3E-05 1.8E-09 46.4 3.6 25 42-66 7-31 (178)
375 4a1f_A DNAB helicase, replicat 97.6 0.00015 5.2E-09 50.2 6.2 38 30-67 32-70 (338)
376 1u8z_A RAS-related protein RAL 97.6 4.1E-05 1.4E-09 46.2 3.0 23 44-66 5-27 (168)
377 1z0j_A RAB-22, RAS-related pro 97.6 4.2E-05 1.4E-09 46.3 3.0 23 45-67 8-30 (170)
378 2erx_A GTP-binding protein DI- 97.6 4E-05 1.4E-09 46.4 2.9 22 45-66 5-26 (172)
379 2ce2_X GTPase HRAS; signaling 97.6 3.8E-05 1.3E-09 46.2 2.8 22 45-66 5-26 (166)
380 1ek0_A Protein (GTP-binding pr 97.6 4.3E-05 1.5E-09 46.2 3.0 22 45-66 5-26 (170)
381 2ocp_A DGK, deoxyguanosine kin 97.6 4.4E-05 1.5E-09 49.8 3.2 26 43-68 2-27 (241)
382 4ad8_A DNA repair protein RECN 97.6 8.7E-06 3E-10 58.9 -0.2 29 38-67 56-84 (517)
383 1wms_A RAB-9, RAB9, RAS-relate 97.6 4.4E-05 1.5E-09 46.7 3.0 22 45-66 9-30 (177)
384 1mky_A Probable GTP-binding pr 97.6 3.5E-05 1.2E-09 54.7 2.9 24 44-67 181-204 (439)
385 1z08_A RAS-related protein RAB 97.6 4.5E-05 1.5E-09 46.3 3.0 22 45-66 8-29 (170)
386 1ky3_A GTP-binding protein YPT 97.6 4.9E-05 1.7E-09 46.6 3.2 23 44-66 9-31 (182)
387 3lv8_A DTMP kinase, thymidylat 97.6 4.7E-05 1.6E-09 50.2 3.2 27 42-68 26-52 (236)
388 3auy_A DNA double-strand break 97.6 3.8E-05 1.3E-09 53.3 2.9 22 44-65 26-47 (371)
389 3q85_A GTP-binding protein REM 97.6 4.1E-05 1.4E-09 46.5 2.7 21 45-65 4-24 (169)
390 1u94_A RECA protein, recombina 97.6 6.1E-05 2.1E-09 52.4 3.9 28 40-67 60-87 (356)
391 1g16_A RAS-related protein SEC 97.6 4.1E-05 1.4E-09 46.4 2.6 22 45-66 5-26 (170)
392 1c1y_A RAS-related protein RAP 97.6 5E-05 1.7E-09 45.9 3.0 22 45-66 5-26 (167)
393 1p5z_B DCK, deoxycytidine kina 97.6 2.6E-05 8.8E-10 51.6 1.8 28 41-68 22-49 (263)
394 3tmk_A Thymidylate kinase; pho 97.5 6.2E-05 2.1E-09 49.0 3.5 28 42-69 4-31 (216)
395 1nrj_B SR-beta, signal recogni 97.5 5.3E-05 1.8E-09 48.2 3.1 25 43-67 12-36 (218)
396 3clv_A RAB5 protein, putative; 97.5 5.4E-05 1.8E-09 47.0 3.0 23 44-66 8-30 (208)
397 3q72_A GTP-binding protein RAD 97.5 3E-05 1E-09 47.0 1.8 22 45-66 4-25 (166)
398 4ag6_A VIRB4 ATPase, type IV s 97.5 3.2E-05 1.1E-09 53.9 2.2 26 42-67 34-59 (392)
399 1r2q_A RAS-related protein RAB 97.5 5.5E-05 1.9E-09 45.7 3.0 21 45-65 8-28 (170)
400 3bc1_A RAS-related protein RAB 97.5 5.5E-05 1.9E-09 46.7 3.0 23 44-66 12-34 (195)
401 4dsu_A GTPase KRAS, isoform 2B 97.5 5.8E-05 2E-09 46.6 3.0 22 45-66 6-27 (189)
402 3t1o_A Gliding protein MGLA; G 97.5 6.4E-05 2.2E-09 46.6 3.3 24 45-68 16-39 (198)
403 3tw8_B RAS-related protein RAB 97.5 4E-05 1.4E-09 46.9 2.3 22 45-66 11-32 (181)
404 3fdi_A Uncharacterized protein 97.5 7.7E-05 2.6E-09 47.8 3.7 29 44-72 7-35 (201)
405 2hxs_A RAB-26, RAS-related pro 97.5 6E-05 2E-09 46.1 3.1 22 45-66 8-29 (178)
406 1m8p_A Sulfate adenylyltransfe 97.5 7.5E-05 2.6E-09 54.9 4.0 27 42-68 395-421 (573)
407 2oil_A CATX-8, RAS-related pro 97.5 6E-05 2.1E-09 47.0 3.0 23 44-66 26-48 (193)
408 3b1v_A Ferrous iron uptake tra 97.5 5.3E-05 1.8E-09 50.7 2.9 23 44-66 4-26 (272)
409 4tmk_A Protein (thymidylate ki 97.5 6.7E-05 2.3E-09 48.7 3.3 27 42-68 2-28 (213)
410 1upt_A ARL1, ADP-ribosylation 97.5 8.4E-05 2.9E-09 45.1 3.6 25 42-66 6-30 (171)
411 2fn4_A P23, RAS-related protei 97.5 5.3E-05 1.8E-09 46.4 2.7 23 44-66 10-32 (181)
412 3llm_A ATP-dependent RNA helic 97.5 7.3E-05 2.5E-09 48.6 3.5 25 41-65 74-98 (235)
413 2p5s_A RAS and EF-hand domain 97.5 6.9E-05 2.4E-09 47.1 3.2 26 41-66 26-51 (199)
414 3ld9_A DTMP kinase, thymidylat 97.5 8.1E-05 2.8E-09 48.7 3.6 29 41-69 19-47 (223)
415 2e87_A Hypothetical protein PH 97.5 8.4E-05 2.9E-09 51.3 3.9 26 42-67 166-191 (357)
416 2xau_A PRE-mRNA-splicing facto 97.5 8.5E-05 2.9E-09 56.3 4.1 62 5-67 71-133 (773)
417 1r8s_A ADP-ribosylation factor 97.5 6.8E-05 2.3E-09 45.3 3.0 22 45-66 2-23 (164)
418 3con_A GTPase NRAS; structural 97.5 7.2E-05 2.5E-09 46.4 3.1 22 45-66 23-44 (190)
419 2a9k_A RAS-related protein RAL 97.5 6.9E-05 2.4E-09 46.1 3.0 23 44-66 19-41 (187)
420 2gno_A DNA polymerase III, gam 97.5 0.00018 6.1E-09 49.0 5.2 33 44-76 19-57 (305)
421 1z0f_A RAB14, member RAS oncog 97.5 7.2E-05 2.5E-09 45.7 3.0 23 44-66 16-38 (179)
422 1svi_A GTP-binding protein YSX 97.5 8.6E-05 3E-09 46.2 3.4 25 42-66 22-46 (195)
423 2efe_B Small GTP-binding prote 97.5 7.5E-05 2.5E-09 45.8 3.0 22 45-66 14-35 (181)
424 3pqc_A Probable GTP-binding pr 97.5 5.5E-05 1.9E-09 46.9 2.4 24 44-67 24-47 (195)
425 2y8e_A RAB-protein 6, GH09086P 97.5 6.2E-05 2.1E-09 46.0 2.6 23 44-66 15-37 (179)
426 1m2o_B GTP-binding protein SAR 97.5 6.6E-05 2.3E-09 47.0 2.8 22 44-65 24-45 (190)
427 2cxx_A Probable GTP-binding pr 97.5 5.2E-05 1.8E-09 46.9 2.2 22 45-66 3-24 (190)
428 1g8f_A Sulfate adenylyltransfe 97.5 7E-05 2.4E-09 54.4 3.1 29 41-69 393-421 (511)
429 2g6b_A RAS-related protein RAB 97.5 8.4E-05 2.9E-09 45.5 3.1 23 44-66 11-33 (180)
430 1fzq_A ADP-ribosylation factor 97.5 4.5E-05 1.5E-09 47.4 1.8 24 43-66 16-39 (181)
431 3t34_A Dynamin-related protein 97.4 8.6E-05 2.9E-09 51.3 3.3 22 45-66 36-57 (360)
432 3lxw_A GTPase IMAP family memb 97.4 8E-05 2.8E-09 49.0 3.0 24 43-66 21-44 (247)
433 3tkl_A RAS-related protein RAB 97.4 8.5E-05 2.9E-09 46.2 3.0 22 45-66 18-39 (196)
434 2gf9_A RAS-related protein RAB 97.4 8.6E-05 2.9E-09 46.2 3.0 22 45-66 24-45 (189)
435 2v3c_C SRP54, signal recogniti 97.4 9E-05 3.1E-09 52.8 3.4 26 43-68 99-124 (432)
436 2bme_A RAB4A, RAS-related prot 97.4 7.2E-05 2.5E-09 46.1 2.6 23 44-66 11-33 (186)
437 3e1s_A Exodeoxyribonuclease V, 97.4 0.0002 7E-09 52.6 5.3 26 43-68 204-229 (574)
438 1vg8_A RAS-related protein RAB 97.4 9E-05 3.1E-09 46.5 3.0 23 44-66 9-31 (207)
439 2atv_A RERG, RAS-like estrogen 97.4 0.00011 3.7E-09 46.0 3.4 25 42-66 27-51 (196)
440 3ihw_A Centg3; RAS, centaurin, 97.4 9E-05 3.1E-09 46.2 3.0 22 45-66 22-43 (184)
441 2bov_A RAla, RAS-related prote 97.4 8.9E-05 3E-09 46.5 3.0 23 44-66 15-37 (206)
442 2axn_A 6-phosphofructo-2-kinas 97.4 0.0001 3.6E-09 53.5 3.7 26 42-67 34-59 (520)
443 2orw_A Thymidine kinase; TMTK, 97.4 0.0001 3.5E-09 46.6 3.3 22 43-64 3-24 (184)
444 3kkq_A RAS-related protein M-R 97.4 9.9E-05 3.4E-09 45.5 3.1 23 44-66 19-41 (183)
445 1m7b_A RND3/RHOE small GTP-bin 97.4 7.7E-05 2.6E-09 46.3 2.6 23 44-66 8-30 (184)
446 3iby_A Ferrous iron transport 97.4 7.8E-05 2.7E-09 49.4 2.7 22 45-66 3-24 (256)
447 1f6b_A SAR1; gtpases, N-termin 97.4 4.3E-05 1.5E-09 48.2 1.4 22 44-65 26-47 (198)
448 3iev_A GTP-binding protein ERA 97.4 6.6E-05 2.2E-09 51.0 2.4 25 42-66 9-33 (308)
449 1mh1_A RAC1; GTP-binding, GTPa 97.4 9.9E-05 3.4E-09 45.4 3.0 22 45-66 7-28 (186)
450 1ko7_A HPR kinase/phosphatase; 97.4 8.3E-05 2.8E-09 51.0 2.8 24 42-65 143-166 (314)
451 1z06_A RAS-related protein RAB 97.4 0.0001 3.6E-09 45.8 3.0 23 44-66 21-43 (189)
452 2fg5_A RAB-22B, RAS-related pr 97.4 8.7E-05 3E-09 46.4 2.7 23 44-66 24-46 (192)
453 2q6t_A DNAB replication FORK h 97.4 0.00011 3.8E-09 52.2 3.5 29 39-67 196-224 (444)
454 1zbd_A Rabphilin-3A; G protein 97.4 9.8E-05 3.4E-09 46.3 2.9 23 44-66 9-31 (203)
455 1x3s_A RAS-related protein RAB 97.4 0.00011 3.7E-09 45.6 3.0 23 44-66 16-38 (195)
456 1ksh_A ARF-like protein 2; sma 97.4 9.5E-05 3.2E-09 45.7 2.7 25 42-66 17-41 (186)
457 2wsm_A Hydrogenase expression/ 97.4 9.6E-05 3.3E-09 47.1 2.8 25 43-67 30-54 (221)
458 3a1s_A Iron(II) transport prot 97.4 0.00011 3.7E-09 48.8 3.1 22 45-66 7-28 (258)
459 2gf0_A GTP-binding protein DI- 97.4 9.5E-05 3.3E-09 46.1 2.7 23 44-66 9-31 (199)
460 2a5j_A RAS-related protein RAB 97.4 0.00011 3.9E-09 45.7 3.0 22 45-66 23-44 (191)
461 3bwd_D RAC-like GTP-binding pr 97.4 0.00015 5.2E-09 44.4 3.5 24 43-66 8-31 (182)
462 1zd9_A ADP-ribosylation factor 97.4 0.00012 4E-09 45.7 3.0 24 43-66 22-45 (188)
463 1moz_A ARL1, ADP-ribosylation 97.4 8.2E-05 2.8E-09 45.8 2.3 24 42-65 17-40 (183)
464 3dz8_A RAS-related protein RAB 97.4 9.8E-05 3.4E-09 46.0 2.6 23 45-67 25-47 (191)
465 3cph_A RAS-related protein SEC 97.4 0.00012 4E-09 46.2 3.0 25 42-66 19-43 (213)
466 3oes_A GTPase rhebl1; small GT 97.4 9.8E-05 3.3E-09 46.5 2.6 26 42-67 23-48 (201)
467 3reg_A RHO-like small GTPase; 97.4 0.00012 4.2E-09 45.6 3.0 23 44-66 24-46 (194)
468 2cjw_A GTP-binding protein GEM 97.3 0.00013 4.3E-09 45.9 3.0 22 45-66 8-29 (192)
469 3c5c_A RAS-like protein 12; GD 97.3 0.00013 4.5E-09 45.5 3.0 23 44-66 22-44 (187)
470 3t5g_A GTP-binding protein RHE 97.3 0.00012 4E-09 45.1 2.8 22 44-65 7-28 (181)
471 2bcg_Y Protein YP2, GTP-bindin 97.3 0.00011 3.7E-09 46.3 2.6 22 45-66 10-31 (206)
472 2b6h_A ADP-ribosylation factor 97.3 0.00012 4E-09 46.0 2.8 25 41-65 27-51 (192)
473 3cbq_A GTP-binding protein REM 97.3 6.9E-05 2.4E-09 47.2 1.7 23 44-66 24-46 (195)
474 2qag_A Septin-2, protein NEDD5 97.3 8.5E-05 2.9E-09 51.6 2.3 22 45-66 39-60 (361)
475 2xtp_A GTPase IMAP family memb 97.3 0.00011 3.9E-09 48.2 2.7 24 43-66 22-45 (260)
476 4hlc_A DTMP kinase, thymidylat 97.3 0.00017 5.7E-09 46.4 3.4 26 43-68 2-27 (205)
477 2ew1_A RAS-related protein RAB 97.3 0.00012 4E-09 46.5 2.6 23 44-66 27-49 (201)
478 3i8s_A Ferrous iron transport 97.3 0.00012 4.1E-09 48.9 2.7 23 44-66 4-26 (274)
479 2dby_A GTP-binding protein; GD 97.3 0.00013 4.5E-09 51.0 3.0 23 45-67 3-25 (368)
480 2iwr_A Centaurin gamma 1; ANK 97.3 9.7E-05 3.3E-09 45.3 2.1 23 44-66 8-30 (178)
481 2qu8_A Putative nucleolar GTP- 97.3 0.00012 4.1E-09 47.1 2.6 24 43-66 29-52 (228)
482 2f7s_A C25KG, RAS-related prot 97.3 0.00014 4.6E-09 46.2 2.8 22 45-66 27-48 (217)
483 3geh_A MNME, tRNA modification 97.3 0.00033 1.1E-08 50.2 5.1 52 14-67 197-248 (462)
484 1wf3_A GTP-binding protein; GT 97.3 0.00014 4.8E-09 49.3 3.0 23 44-66 8-30 (301)
485 1gwn_A RHO-related GTP-binding 97.3 0.00013 4.3E-09 46.5 2.6 23 44-66 29-51 (205)
486 2j37_W Signal recognition part 97.3 0.00019 6.6E-09 52.1 3.9 26 42-67 100-125 (504)
487 1xp8_A RECA protein, recombina 97.3 0.0001 3.6E-09 51.4 2.3 28 39-66 70-97 (366)
488 1zj6_A ADP-ribosylation factor 97.3 0.00013 4.6E-09 45.2 2.6 25 42-66 15-39 (187)
489 2fh5_B SR-beta, signal recogni 97.3 0.00017 5.6E-09 45.7 3.1 23 44-66 8-30 (214)
490 1a5t_A Delta prime, HOLB; zinc 97.3 0.00021 7E-09 48.9 3.8 26 43-68 24-49 (334)
491 1bif_A 6-phosphofructo-2-kinas 97.3 0.00018 6E-09 51.5 3.5 27 42-68 38-64 (469)
492 2il1_A RAB12; G-protein, GDP, 97.3 0.00011 3.8E-09 45.9 2.2 22 45-66 28-49 (192)
493 4bas_A ADP-ribosylation factor 97.3 0.00013 4.3E-09 45.5 2.4 24 43-66 17-40 (199)
494 2o52_A RAS-related protein RAB 97.3 0.00012 4.1E-09 46.1 2.4 23 44-66 26-48 (200)
495 2fv8_A H6, RHO-related GTP-bin 97.3 0.00014 4.9E-09 46.0 2.7 23 44-66 26-48 (207)
496 1sky_E F1-ATPase, F1-ATP synth 97.3 0.00018 6.3E-09 51.8 3.4 29 40-68 148-176 (473)
497 3hdt_A Putative kinase; struct 97.3 0.00022 7.6E-09 46.5 3.6 29 43-71 14-42 (223)
498 3p32_A Probable GTPase RV1496/ 97.3 0.00021 7.3E-09 49.3 3.6 26 42-67 78-103 (355)
499 2q3h_A RAS homolog gene family 97.3 0.00016 5.3E-09 45.3 2.7 25 42-66 19-43 (201)
500 2h17_A ADP-ribosylation factor 97.3 0.00012 4.2E-09 45.2 2.2 24 43-66 21-44 (181)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3e-23 Score=146.34 Aligned_cols=96 Identities=55% Similarity=0.944 Sum_probs=90.3
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+-++|+||||+++++++|++.+.+|+.+|++|..+++.++++++|+||||||||++++++|+....+++.+.++++.+++
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~ 222 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY 222 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHccchhh
Q psy16321 84 LGDGPKLVRVALVPEV 99 (102)
Q Consensus 84 ~~~~~~~~~~~~~~q~ 99 (102)
.++++...+..|..+.
T Consensus 223 vGese~~vr~lF~~Ar 238 (405)
T 4b4t_J 223 IGEGSRMVRELFVMAR 238 (405)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 9999988887776543
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.5e-22 Score=142.38 Aligned_cols=96 Identities=76% Similarity=1.114 Sum_probs=90.0
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+-++|+||||+++++++|++.+.+|+.+++.|..+++.++++++|+||||||||++++++|+....+++.+.+.++.+++
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~ 256 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKY 256 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSS
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHccchhh
Q psy16321 84 LGDGPKLVRVALVPEV 99 (102)
Q Consensus 84 ~~~~~~~~~~~~~~q~ 99 (102)
.++++...+..|..+.
T Consensus 257 vGesek~ir~lF~~Ar 272 (437)
T 4b4t_I 257 LGDGPRLCRQIFKVAG 272 (437)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHH
Confidence 9999988887775543
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3e-22 Score=142.60 Aligned_cols=96 Identities=46% Similarity=0.818 Sum_probs=89.4
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+-++|+||||+++++++|++.+.+|+.+++.|..+++.++++++|+||||||||+++++||+.+..+++.+.++++.+++
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~ 255 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKY 255 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSS
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHccchhh
Q psy16321 84 LGDGPKLVRVALVPEV 99 (102)
Q Consensus 84 ~~~~~~~~~~~~~~q~ 99 (102)
.++++...+..|..+.
T Consensus 256 ~Gese~~ir~~F~~A~ 271 (437)
T 4b4t_L 256 IGESARIIREMFAYAK 271 (437)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 9999888777665543
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.8e-22 Score=142.61 Aligned_cols=95 Identities=47% Similarity=0.861 Sum_probs=89.2
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+.++|++|||+++++++|++.+.+|+.+|+.|..++++++++++|+||||||||++++++|+.+..+++.+.+.++..++
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~ 255 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMY 255 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSC
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHccchh
Q psy16321 84 LGDGPKLVRVALVPE 98 (102)
Q Consensus 84 ~~~~~~~~~~~~~~q 98 (102)
.++++...+..|..+
T Consensus 256 vGese~~ir~lF~~A 270 (434)
T 4b4t_M 256 IGEGAKLVRDAFALA 270 (434)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH
Confidence 999998887776544
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.6e-22 Score=142.66 Aligned_cols=96 Identities=52% Similarity=0.897 Sum_probs=90.0
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+-++|+||||+++++++|++.+.+|+.+++.|..+++.++++++|+||||||||+|+++||+.+..+++.+.+.++..++
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~ 283 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKY 283 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCS
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhccc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHccchhh
Q psy16321 84 LGDGPKLVRVALVPEV 99 (102)
Q Consensus 84 ~~~~~~~~~~~~~~q~ 99 (102)
.+++++..+..|..+.
T Consensus 284 vGesek~ir~lF~~Ar 299 (467)
T 4b4t_H 284 VGEGARMVRELFEMAR 299 (467)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999988887776543
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.2e-22 Score=140.06 Aligned_cols=96 Identities=55% Similarity=0.960 Sum_probs=89.4
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+-++|+||||+++++++|++.+.+|+.+++.|..+++.++++++|+||||||||++++++|+.++.+++.+.+.++.+++
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKY 246 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSS
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccc
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHccchhh
Q psy16321 84 LGDGPKLVRVALVPEV 99 (102)
Q Consensus 84 ~~~~~~~~~~~~~~q~ 99 (102)
.++++...+..|..+.
T Consensus 247 ~Ge~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 247 LGEGPRMVRDVFRLAR 262 (428)
T ss_dssp CSHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHH
Confidence 9999988877775543
No 7
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.81 E-value=5.8e-20 Score=123.96 Aligned_cols=94 Identities=36% Similarity=0.637 Sum_probs=74.2
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+.++|++|+|+++++++|++.+.+++.+++.+.++++..+++++|+||||||||||+++|++.+.+..+.+.+.++...+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 45799999999999999999999999999999999988888899999999999999999999999988888887765554
Q ss_pred cCchHHHHHHccchhh
Q psy16321 84 LGDGPKLVRVALVPEV 99 (102)
Q Consensus 84 ~~~~~~~~~~~~~~q~ 99 (102)
.++.+ ..+.+++|.
T Consensus 85 ~~~~~--~~i~~vf~~ 98 (274)
T 2x8a_A 85 VGESE--RAVRQVFQR 98 (274)
T ss_dssp THHHH--HHHHHHHHH
T ss_pred hhHHH--HHHHHHHHH
Confidence 44333 345566654
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.78 E-value=1.1e-19 Score=136.84 Aligned_cols=96 Identities=44% Similarity=0.779 Sum_probs=89.1
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+-++|++|+|+++++++|++.+.+|+.+|++|..+++.++++++|+||||||||+|++++|+.+..+++.+++.++.+++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHccchhh
Q psy16321 84 LGDGPKLVRVALVPEV 99 (102)
Q Consensus 84 ~~~~~~~~~~~~~~q~ 99 (102)
.++++.+.+..|..+.
T Consensus 279 ~gese~~lr~lF~~A~ 294 (806)
T 3cf2_A 279 AGESESNLRKAFEEAE 294 (806)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHH
Confidence 9999988877775543
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.73 E-value=2.9e-18 Score=129.26 Aligned_cols=96 Identities=38% Similarity=0.700 Sum_probs=89.9
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+.++|++|+|+++++++|++.+.+++.+++.+..+++.++++++|+||||||||.+++++|..+..+++.+...++.+++
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHccchhh
Q psy16321 84 LGDGPKLVRVALVPEV 99 (102)
Q Consensus 84 ~~~~~~~~~~~~~~q~ 99 (102)
.+++++..+..|..+.
T Consensus 552 vGese~~vr~lF~~Ar 567 (806)
T 3cf2_A 552 FGESEANVREIFDKAR 567 (806)
T ss_dssp CSSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 9999998887776554
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.73 E-value=7.7e-18 Score=114.55 Aligned_cols=86 Identities=40% Similarity=0.786 Sum_probs=77.4
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+..+|++|+|++++++.|++.+.+++.+++.+.++++.++.+++|+||||||||++++++++.+...++.+++.++...+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999888888887776666
Q ss_pred cCchHH
Q psy16321 84 LGDGPK 89 (102)
Q Consensus 84 ~~~~~~ 89 (102)
.+..+.
T Consensus 90 ~g~~~~ 95 (301)
T 3cf0_A 90 FGESEA 95 (301)
T ss_dssp HTTCTT
T ss_pred cCchHH
Confidence 655443
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=109.16 Aligned_cols=91 Identities=36% Similarity=0.670 Sum_probs=76.7
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh-CccEEEEccchhhhh
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT-SATFLRVVGSELIQK 82 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~-~~~~~~i~~~~~~~~ 82 (102)
+.++|++|+|++++++.|++.+.+++.+++.+... ..++..++|+||+|||||+++++++..+ ...++.+...++...
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 85 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT-CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCC-CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh
Confidence 45789999999999999999999999999887753 4667899999999999999999999988 677888888887777
Q ss_pred ccCchHHHHHHcc
Q psy16321 83 YLGDGPKLVRVAL 95 (102)
Q Consensus 83 ~~~~~~~~~~~~~ 95 (102)
+.+..+...+..|
T Consensus 86 ~~g~~~~~~~~lf 98 (322)
T 1xwi_A 86 WLGESEKLVKNLF 98 (322)
T ss_dssp SCCSCHHHHHHHH
T ss_pred hhhHHHHHHHHHH
Confidence 7777666554433
No 12
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.64 E-value=9.5e-16 Score=102.75 Aligned_cols=87 Identities=62% Similarity=1.087 Sum_probs=76.7
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+..+|++|+|++++++.|++.+..++.+++.+..+++.++..++|+||||+|||+++++++..+......+...++...+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 91 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKF 91 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhc
Confidence 45689999999999999999999999999999999999999999999999999999999999999888888877776655
Q ss_pred cCchHHH
Q psy16321 84 LGDGPKL 90 (102)
Q Consensus 84 ~~~~~~~ 90 (102)
.+..+..
T Consensus 92 ~~~~~~~ 98 (285)
T 3h4m_A 92 IGEGASL 98 (285)
T ss_dssp TTHHHHH
T ss_pred cchHHHH
Confidence 5554433
No 13
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.63 E-value=1.5e-16 Score=120.25 Aligned_cols=88 Identities=47% Similarity=0.853 Sum_probs=78.4
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 84 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~ 84 (102)
..+|++|+|++.+++.|++.+.+++.+++++.++.+.+++.++|+||||||||||+++|++.++...+.+++.++...+.
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~ 279 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSST
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhh
Confidence 46899999999999999999999999999999999999999999999999999999999999998888888877766665
Q ss_pred CchHHHHH
Q psy16321 85 GDGPKLVR 92 (102)
Q Consensus 85 ~~~~~~~~ 92 (102)
++.+.+.+
T Consensus 280 g~~~~~l~ 287 (806)
T 1ypw_A 280 GESESNLR 287 (806)
T ss_dssp THHHHHHH
T ss_pred hhHHHHHH
Confidence 55554433
No 14
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.63 E-value=8.2e-16 Score=105.33 Aligned_cols=90 Identities=39% Similarity=0.712 Sum_probs=77.2
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+..+|++|+|++++++.|++.+.++..+++.+.. ...+...++|+||||||||+++++++..+...++.+...++...+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~ 91 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 91 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTT
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcc
Confidence 4578999999999999999999999999888776 346678999999999999999999999999999999888887777
Q ss_pred cCchHHHHHHc
Q psy16321 84 LGDGPKLVRVA 94 (102)
Q Consensus 84 ~~~~~~~~~~~ 94 (102)
.+..+...+..
T Consensus 92 ~g~~~~~~~~~ 102 (322)
T 3eie_A 92 MGESEKLVKQL 102 (322)
T ss_dssp GGGHHHHHHHH
T ss_pred cchHHHHHHHH
Confidence 77766555433
No 15
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.61 E-value=1.7e-15 Score=100.43 Aligned_cols=86 Identities=37% Similarity=0.672 Sum_probs=66.9
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
...+|++|+|++.+++++++.+.+ +.+++.+.+++......++|+|||||||||++++|++.+..+.+.+...++...+
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 85 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 85 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHh
Confidence 357899999999999999998765 6666777777777778899999999999999999999998888888877765555
Q ss_pred cCchHHH
Q psy16321 84 LGDGPKL 90 (102)
Q Consensus 84 ~~~~~~~ 90 (102)
.+..+..
T Consensus 86 ~~~~~~~ 92 (257)
T 1lv7_A 86 VGVGASR 92 (257)
T ss_dssp CCCCHHH
T ss_pred hhhhHHH
Confidence 5554443
No 16
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.61 E-value=4.1e-15 Score=98.46 Aligned_cols=93 Identities=39% Similarity=0.665 Sum_probs=71.7
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+..+|++++|+++++.++++.... +..+..+.++++....+++|+||||||||||+++|++......+.+.+.++....
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 89 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 89 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHH
Confidence 456899999999999999987765 5667788888877777799999999999999999999998777777766654444
Q ss_pred cCchHHHHHHccchhh
Q psy16321 84 LGDGPKLVRVALVPEV 99 (102)
Q Consensus 84 ~~~~~~~~~~~~~~q~ 99 (102)
.+... ..+..++|.
T Consensus 90 ~~~~~--~~i~~~~~~ 103 (254)
T 1ixz_A 90 VGVGA--ARVRDLFET 103 (254)
T ss_dssp TTHHH--HHHHHHHHH
T ss_pred hhHHH--HHHHHHHHH
Confidence 33322 334445554
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.60 E-value=1.5e-15 Score=105.53 Aligned_cols=89 Identities=39% Similarity=0.724 Sum_probs=73.5
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+..+|++|+|++++++.|++.+.+++.+++.+.. ...++..++|+||+|||||+++++++..+..+++.+...++...+
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~ 124 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 124 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhh
Confidence 3578999999999999999999999999988776 456778899999999999999999999999988888888777666
Q ss_pred cCchHHHHHH
Q psy16321 84 LGDGPKLVRV 93 (102)
Q Consensus 84 ~~~~~~~~~~ 93 (102)
.+..+...+.
T Consensus 125 ~g~~~~~~~~ 134 (355)
T 2qp9_X 125 MGESEKLVKQ 134 (355)
T ss_dssp ---CHHHHHH
T ss_pred cchHHHHHHH
Confidence 6666554443
No 18
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.59 E-value=4.6e-16 Score=102.93 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=49.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH----HHHHHccchhhhc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP----KLVRVALVPEVRN 101 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~q~~~ 101 (102)
++.+.+|+.++|+||||||||||+++|+|+.+|..|+|...+.........+ ++.+++|++|++.
T Consensus 25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~ 93 (235)
T 3tif_A 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN 93 (235)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCc
Confidence 5778999999999999999999999999999999888876543222222222 2346999999863
No 19
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.58 E-value=5.4e-16 Score=103.27 Aligned_cols=64 Identities=17% Similarity=0.091 Sum_probs=50.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+++|..|.|...+...........+.+++|++|++
T Consensus 29 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~ 92 (247)
T 2ff7_A 29 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDN 92 (247)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCC
Confidence 5678899999999999999999999999999999888876543222222234456799999975
No 20
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.58 E-value=8.4e-16 Score=103.59 Aligned_cols=64 Identities=23% Similarity=0.158 Sum_probs=50.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+++|..|.|...+...........+.+++|++|++
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~ 102 (271)
T 2ixe_A 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEP 102 (271)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCC
Confidence 5678999999999999999999999999999999888876543222222334456799999975
No 21
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.57 E-value=1.1e-14 Score=104.82 Aligned_cols=91 Identities=40% Similarity=0.742 Sum_probs=76.0
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+..+|++|+|+++.++++++.+.+ +..+..+.++++..+.+++|+||||||||++++++++....+++.++..++...+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 346899999999999999998876 6677888888888888999999999999999999999999889889888776666
Q ss_pred cCchHHHHHHcc
Q psy16321 84 LGDGPKLVRVAL 95 (102)
Q Consensus 84 ~~~~~~~~~~~~ 95 (102)
.+....+.+..|
T Consensus 90 ~g~~~~~~r~lf 101 (476)
T 2ce7_A 90 VGVGAARVRDLF 101 (476)
T ss_dssp TTHHHHHHHHHH
T ss_pred hcccHHHHHHHH
Confidence 665554444333
No 22
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.57 E-value=6.8e-15 Score=99.17 Aligned_cols=87 Identities=47% Similarity=0.776 Sum_probs=72.7
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 84 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~ 84 (102)
..+|++++|.+.+++.|++.+..+..+++.+..+. .++..++|+|||||||||+++++++.+...+..+...++...+.
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~ 95 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYV 95 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSC
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhccc
Confidence 56899999999999999999999988888777654 45789999999999999999999999988888888877766665
Q ss_pred CchHHHHH
Q psy16321 85 GDGPKLVR 92 (102)
Q Consensus 85 ~~~~~~~~ 92 (102)
+..+...+
T Consensus 96 ~~~~~~~~ 103 (297)
T 3b9p_A 96 GDGEKLVR 103 (297)
T ss_dssp SCHHHHHH
T ss_pred chHHHHHH
Confidence 55544433
No 23
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.56 E-value=9.8e-15 Score=105.29 Aligned_cols=90 Identities=47% Similarity=0.853 Sum_probs=79.2
Q ss_pred ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC
Q psy16321 6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG 85 (102)
Q Consensus 6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~ 85 (102)
.+|++|+|++.+++.|++.+..++.+++.+..+++.+...++|+||||||||+++++|+.....+++.+++.++...+.+
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g 280 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTT
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcc
Confidence 47999999999999999999999999999999999999999999999999999999999999888999988888777766
Q ss_pred chHHHHHHcc
Q psy16321 86 DGPKLVRVAL 95 (102)
Q Consensus 86 ~~~~~~~~~~ 95 (102)
+.+...+-.|
T Consensus 281 ~~~~~~~~~f 290 (489)
T 3hu3_A 281 ESESNLRKAF 290 (489)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 6554444333
No 24
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.56 E-value=4.5e-16 Score=105.20 Aligned_cols=64 Identities=17% Similarity=0.093 Sum_probs=49.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK--YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+++|+|+++|..|.|...+.... .....+.+.+++|++|++
T Consensus 28 sl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~ 93 (275)
T 3gfo_A 28 NMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDP 93 (275)
T ss_dssp EEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSG
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCc
Confidence 5678999999999999999999999999999999888865543211 111223456799999976
No 25
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.56 E-value=1.9e-14 Score=96.55 Aligned_cols=93 Identities=39% Similarity=0.665 Sum_probs=70.8
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+..+|++++|++++++++++.... +..+..+.++++....+++|+||||||||||+++|++......+.+.+.++....
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 457899999999999999987764 5667788888777777799999999999999999999998777777766654433
Q ss_pred cCchHHHHHHccchhh
Q psy16321 84 LGDGPKLVRVALVPEV 99 (102)
Q Consensus 84 ~~~~~~~~~~~~~~q~ 99 (102)
.+... .++.+++|.
T Consensus 114 ~~~~~--~~i~~~~~~ 127 (278)
T 1iy2_A 114 VGVGA--ARVRDLFET 127 (278)
T ss_dssp TTHHH--HHHHHHHHH
T ss_pred hhHHH--HHHHHHHHH
Confidence 33322 334445554
No 26
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.56 E-value=1.2e-15 Score=101.73 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=50.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+++|. |.+...+.........+.+.+++|++|++
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 82 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQ 82 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCC
Confidence 5678899999999999999999999999999998 98876543222223334556799999975
No 27
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.55 E-value=7.8e-16 Score=103.54 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=50.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+++|+.|.|...+.........+.++.++|++|++
T Consensus 31 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~ 94 (266)
T 4g1u_C 31 SLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYS 94 (266)
T ss_dssp EEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCC
Confidence 4678999999999999999999999999999998877765543222233344556789999875
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.55 E-value=8e-16 Score=105.35 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=53.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
+|.+.+|+.++|+||||||||||+++|+|++.|..|.|...+...........+.+++|++|++
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~ 137 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDT 137 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSC
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCC
Confidence 4668899999999999999999999999999999888876654334444556677899999985
No 29
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=95.99 Aligned_cols=83 Identities=40% Similarity=0.657 Sum_probs=64.1
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 84 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~ 84 (102)
..+|++++|++++++.|++.+.. +.+++.+..+++..+..++|+||+|+|||+++++++..+..+...+...++...+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 35899999999999999998876 66677777788888899999999999999999999999988888888776654444
Q ss_pred CchH
Q psy16321 85 GDGP 88 (102)
Q Consensus 85 ~~~~ 88 (102)
+..+
T Consensus 81 ~~~~ 84 (262)
T 2qz4_A 81 GLGA 84 (262)
T ss_dssp THHH
T ss_pred ChhH
Confidence 4333
No 30
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.55 E-value=1.4e-14 Score=104.79 Aligned_cols=86 Identities=38% Similarity=0.689 Sum_probs=71.5
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+..+|++++|+++.++++++.+.+ +..+..+.++++..+.+++|+||||||||||+++|++.....++.+++.++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 456899999999999999998765 5667778888877778899999999999999999999998888888888776555
Q ss_pred cCchHHH
Q psy16321 84 LGDGPKL 90 (102)
Q Consensus 84 ~~~~~~~ 90 (102)
.+....+
T Consensus 105 ~g~~~~~ 111 (499)
T 2dhr_A 105 VGVGAAR 111 (499)
T ss_dssp TTHHHHH
T ss_pred hhhHHHH
Confidence 5544433
No 31
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.55 E-value=1.2e-15 Score=101.12 Aligned_cols=64 Identities=25% Similarity=0.212 Sum_probs=48.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHH-HHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPK-LVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+++|..|.+...+.........+. +.+++|++|++
T Consensus 26 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 90 (240)
T 1ji0_A 26 DLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGR 90 (240)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCC
Confidence 46788999999999999999999999999999998888765432111122222 33489999975
No 32
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.54 E-value=2e-15 Score=101.39 Aligned_cols=64 Identities=16% Similarity=0.145 Sum_probs=49.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK--YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+++|+|+++|+.|.|...+.... .......+++++|++|++
T Consensus 44 sl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~ 109 (263)
T 2olj_A 44 NVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRF 109 (263)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSC
T ss_pred EEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCC
Confidence 5678999999999999999999999999999999888866543211 111223456799999975
No 33
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.54 E-value=1.4e-15 Score=106.32 Aligned_cols=65 Identities=15% Similarity=0.117 Sum_probs=50.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch---HHHHHHccchhhhc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG---PKLVRVALVPEVRN 101 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~q~~~ 101 (102)
+|++.+|++++|+||||||||||+|+|+|+++|+.|.|...+......... ..+++++|+||+++
T Consensus 48 sl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~ 115 (366)
T 3tui_C 48 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 115 (366)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCC
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCc
Confidence 577899999999999999999999999999999988887654322222222 23456999999863
No 34
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.53 E-value=1.8e-15 Score=99.42 Aligned_cols=64 Identities=17% Similarity=0.155 Sum_probs=48.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch---HH-HHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG---PK-LVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~---~~-~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+.+|..|.+...+......... .. +.+++|++|++
T Consensus 24 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 91 (224)
T 2pcj_A 24 SLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFH 91 (224)
T ss_dssp EEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCc
Confidence 467889999999999999999999999999999988886654321111111 11 25689999975
No 35
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.53 E-value=1.4e-15 Score=102.88 Aligned_cols=64 Identities=22% Similarity=0.124 Sum_probs=49.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK--YLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+++|..|.|...+.... .....+.+++++|++|++
T Consensus 41 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~ 106 (279)
T 2ihy_A 41 SWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSL 106 (279)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHH
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCc
Confidence 4678899999999999999999999999999999888876543211 112233445689999975
No 36
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.53 E-value=2.2e-15 Score=100.85 Aligned_cols=63 Identities=17% Similarity=0.080 Sum_probs=48.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+++|+|+.+|..|.|...+..... .....+.+++|++|++
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~~v~q~~ 97 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEA 97 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEEECTTC
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEEEEcCCC
Confidence 46789999999999999999999999999999998888655432111 1123345689999975
No 37
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.53 E-value=2.3e-15 Score=100.65 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=48.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc-hHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD-GPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+++|+|+++|..|.|...+........ ...+.+++|++|++
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 91 (257)
T 1g6h_A 27 SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTP 91 (257)
T ss_dssp CCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCC
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCC
Confidence 46678999999999999999999999999999998888665432111111 12344689999975
No 38
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.52 E-value=1.3e-15 Score=106.25 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=49.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhh--hccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ--KYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+|+|+|+..|+.|.|...+... ........+++++|+||++
T Consensus 24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~ 89 (359)
T 3fvq_A 24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEG 89 (359)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTC
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCC
Confidence 567899999999999999999999999999999988887554321 1112223345799999985
No 39
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.52 E-value=8e-15 Score=104.49 Aligned_cols=83 Identities=36% Similarity=0.689 Sum_probs=64.2
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh-CccEEEEccchhhhh
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT-SATFLRVVGSELIQK 82 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~-~~~~~~i~~~~~~~~ 82 (102)
+..+|++|+|++++++.|++.+.+++.+++.+... ..+...++|+||||||||+++++++..+ ...++.+...++...
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGG-GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhcc-CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 45789999999999999999999999888877642 3567899999999999999999999998 667788887777665
Q ss_pred ccCch
Q psy16321 83 YLGDG 87 (102)
Q Consensus 83 ~~~~~ 87 (102)
+.+..
T Consensus 208 ~~g~~ 212 (444)
T 2zan_A 208 WLGES 212 (444)
T ss_dssp ----C
T ss_pred hcchH
Confidence 55543
No 40
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.52 E-value=1.8e-15 Score=106.18 Aligned_cols=62 Identities=23% Similarity=0.231 Sum_probs=48.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+|+|+|++.|+.|.|...+....... ..++.++|+||++
T Consensus 23 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~--~~~r~ig~VfQ~~ 84 (381)
T 3rlf_A 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP--PAERGVGMVFQSY 84 (381)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC--GGGSCEEEECTTC
T ss_pred EEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCC--HHHCCEEEEecCC
Confidence 5678999999999999999999999999999999888876543222111 2235699999985
No 41
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.52 E-value=6.9e-16 Score=102.45 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=48.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+++|..|.|...+...........+.+++|++|++
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 85 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDS 85 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCC
Confidence 5678999999999999999999999999999998777765432211112222345689999975
No 42
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.51 E-value=3.5e-15 Score=103.76 Aligned_cols=62 Identities=19% Similarity=0.248 Sum_probs=49.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+|+|+|+..|+.|.|...+.... .....+++++|++|++
T Consensus 20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~--~~~~~~r~ig~v~Q~~ 81 (348)
T 3d31_A 20 SLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT--DLSPEKHDIAFVYQNY 81 (348)
T ss_dssp EEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECT--TSCHHHHTCEEECTTC
T ss_pred EEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECC--CCchhhCcEEEEecCc
Confidence 5678999999999999999999999999999999888876543211 1234456799999985
No 43
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.51 E-value=2.8e-15 Score=113.28 Aligned_cols=89 Identities=40% Similarity=0.778 Sum_probs=79.6
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+...|++++|++++++.|++.+.++..+++.+.++.+.++++++|+||||||||||+++|++.+...++.+...++...+
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~ 551 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCC
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhh
Confidence 35689999999999999999999999999999999999999999999999999999999999999888888888887777
Q ss_pred cCchHHHHH
Q psy16321 84 LGDGPKLVR 92 (102)
Q Consensus 84 ~~~~~~~~~ 92 (102)
.++.+...+
T Consensus 552 ~g~~~~~i~ 560 (806)
T 1ypw_A 552 FGESEANVR 560 (806)
T ss_dssp TTTSSHHHH
T ss_pred cCccHHHHH
Confidence 776655444
No 44
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.51 E-value=4.2e-15 Score=99.74 Aligned_cols=64 Identities=9% Similarity=0.101 Sum_probs=48.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc----------cCc---hHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY----------LGD---GPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~----------~~~---~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+++|+|+++|..|.|...+..... ... ...+++++|++|++
T Consensus 26 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~ 102 (262)
T 1b0u_A 26 SLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHF 102 (262)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCc
Confidence 56789999999999999999999999999999998888655421110 111 23345799999975
No 45
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.51 E-value=4.6e-15 Score=99.44 Aligned_cols=63 Identities=17% Similarity=0.104 Sum_probs=48.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|++++ .|.|...+...........+.+++|++|++
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~ 102 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDT 102 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCC
Confidence 567899999999999999999999999999876 677765543222222233455689999975
No 46
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.51 E-value=3.7e-14 Score=98.47 Aligned_cols=87 Identities=38% Similarity=0.736 Sum_probs=72.7
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~ 83 (102)
+..+|++|+|++.+++.|++.+.+++.+++.+.... .+...++|+||+|+|||+++++++......++.+...++...+
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW 157 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc
Confidence 457899999999999999999999888887766553 5678999999999999999999999999888888888776665
Q ss_pred cCchHHHH
Q psy16321 84 LGDGPKLV 91 (102)
Q Consensus 84 ~~~~~~~~ 91 (102)
.+..+...
T Consensus 158 ~g~~~~~~ 165 (357)
T 3d8b_A 158 VGEGEKMV 165 (357)
T ss_dssp TTHHHHHH
T ss_pred cchHHHHH
Confidence 55544443
No 47
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.50 E-value=3.8e-15 Score=103.93 Aligned_cols=62 Identities=24% Similarity=0.251 Sum_probs=48.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+|+|+|+.+|+.|.|...+....... ..+++++|+||++
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~--~~~r~ig~v~Q~~ 84 (359)
T 2yyz_A 23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP--PKYREVGMVFQNY 84 (359)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--GGGTTEEEECSSC
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCC--hhhCcEEEEecCc
Confidence 5678999999999999999999999999999999888876543211111 2235699999975
No 48
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.50 E-value=2.9e-15 Score=97.97 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=47.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+++|..|.|...+.... +.+..++|++|++
T Consensus 29 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~~v~q~~ 87 (214)
T 1sgw_A 29 TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLPEEI 87 (214)
T ss_dssp EEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEEECSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEEEEeCCC
Confidence 4678899999999999999999999999999999888865542111 1245688998875
No 49
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.49 E-value=4.6e-15 Score=99.70 Aligned_cols=61 Identities=18% Similarity=0.117 Sum_probs=48.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+.+|..|.|...+..... ...+.+++|++|++
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~---~~~~~~i~~v~q~~ 87 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG---YEIRRNIGIAFQYP 87 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH---HHHGGGEEEECSSG
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch---HHhhhhEEEEeccc
Confidence 56789999999999999999999999999999998888665431111 13345689999974
No 50
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.49 E-value=4.8e-15 Score=103.51 Aligned_cols=62 Identities=29% Similarity=0.252 Sum_probs=48.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+|+|+|+..|+.|.|...+....... ..+++++|+||++
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~--~~~r~ig~v~Q~~ 84 (362)
T 2it1_A 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP--PKDRNVGLVFQNW 84 (362)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--GGGTTEEEECTTC
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC--HhHCcEEEEecCc
Confidence 5678999999999999999999999999999999888866543211111 2235689999975
No 51
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.49 E-value=3.7e-15 Score=103.85 Aligned_cols=62 Identities=26% Similarity=0.183 Sum_probs=48.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+|+|+|+.+|+.|.|...+..... ....+++++|++|++
T Consensus 35 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~--~~~~~r~ig~v~Q~~ 96 (355)
T 1z47_A 35 SFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTD--LPPQKRNVGLVFQNY 96 (355)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT--CCGGGSSEEEECGGG
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCc--CChhhCcEEEEecCc
Confidence 56788999999999999999999999999999998888765432111 112245689999985
No 52
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.49 E-value=6.2e-15 Score=103.80 Aligned_cols=63 Identities=19% Similarity=0.157 Sum_probs=49.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+++ +.|.|...+.........+.++.++|+||++
T Consensus 41 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~ 103 (390)
T 3gd7_A 41 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKV 103 (390)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCC
T ss_pred eEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCc
Confidence 46789999999999999999999999999987 7787766543322233344566799999985
No 53
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.49 E-value=4.9e-15 Score=103.78 Aligned_cols=62 Identities=27% Similarity=0.327 Sum_probs=47.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+|+|+|+..|+.|.|...+....... ..+++++|+||++
T Consensus 31 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~--~~~r~ig~v~Q~~ 92 (372)
T 1v43_A 31 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP--PKDRNISMVFQSY 92 (372)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--GGGGTEEEEEC--
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCC--hhhCcEEEEecCc
Confidence 5678999999999999999999999999999999888876543211111 2235689999975
No 54
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.47 E-value=2e-14 Score=96.69 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=46.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhh--CccEEEEccchhhhhccCchHH-HHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT--SATFLRVVGSELIQKYLGDGPK-LVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~--~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+. .|..|.|...+........... +..++|++|++
T Consensus 40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~ 106 (267)
T 2zu0_C 40 SLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYP 106 (267)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCc
Confidence 4678999999999999999999999999984 5677777654432121222222 23478999875
No 55
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.46 E-value=1.2e-14 Score=96.77 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=46.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhh--hCccEEEEccchhhhhccCchHH-HHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQ--TSATFLRVVGSELIQKYLGDGPK-LVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~--~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~q~~ 100 (102)
++++.+|+.++|+||||||||||+++|+|+ +.|..|.|...+.........+. +..++|++|++
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~ 89 (250)
T 2d2e_A 23 NLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYP 89 (250)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCC
Confidence 467889999999999999999999999998 67777877655432111122222 22367888875
No 56
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.46 E-value=3.2e-15 Score=104.09 Aligned_cols=64 Identities=17% Similarity=0.221 Sum_probs=48.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc---cCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY---LGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+++|+|+..|+.|.|...+..... ......+++++|++|++
T Consensus 25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~ 91 (353)
T 1oxx_K 25 NINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTW 91 (353)
T ss_dssp EEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTS
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCC
Confidence 57789999999999999999999999999999998888655422111 00122345689999975
No 57
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.46 E-value=7e-15 Score=97.59 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=46.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++.+ +.++|+||||||||||+++|+|+.+|..|.+...+...... ...+++++|++|++
T Consensus 19 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~i~~v~q~~ 79 (240)
T 2onk_A 19 DFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL--PPERRGIGFVPQDY 79 (240)
T ss_dssp EEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS--CTTTSCCBCCCSSC
T ss_pred EEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC--chhhCcEEEEcCCC
Confidence 567889 99999999999999999999999999988886554211111 12234688999875
No 58
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.46 E-value=6e-15 Score=103.34 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=48.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc--cC--chHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY--LG--DGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~--~~--~~~~~~~~~~~~q~~ 100 (102)
++++.+|++++|+||||||||||+|+|+|+..|+.|.|...+..... .. ....+++++|+||++
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~ 90 (372)
T 1g29_1 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSY 90 (372)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCC
T ss_pred EEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCC
Confidence 56788999999999999999999999999999998888655432111 00 112235689999975
No 59
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.46 E-value=3.3e-14 Score=104.49 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=53.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+||||||||||+++|+|+++|+.|++..++.........+.+.+++|++|++
T Consensus 375 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~ 438 (598)
T 3qf4_B 375 TFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDT 438 (598)
T ss_dssp EEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCC
Confidence 4668999999999999999999999999999999888876654444445556677899999986
No 60
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=96.38 Aligned_cols=86 Identities=41% Similarity=0.744 Sum_probs=68.3
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 84 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~ 84 (102)
..+|++|+|.+.+++.|++.+..+..+++.+..+. .+...++|+||+|+|||+++++|+......++.+...++...+.
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~ 189 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYV 189 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-----
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcccc
Confidence 45799999999999999999999888888777665 45689999999999999999999999999999998887766666
Q ss_pred CchHHHH
Q psy16321 85 GDGPKLV 91 (102)
Q Consensus 85 ~~~~~~~ 91 (102)
+..+...
T Consensus 190 g~~~~~~ 196 (389)
T 3vfd_A 190 GEGEKLV 196 (389)
T ss_dssp --CHHHH
T ss_pred chHHHHH
Confidence 6555443
No 61
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.45 E-value=1.6e-14 Score=95.08 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=37.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
++++.+|+.++|+||||||||||+++|+|+++|..|++...
T Consensus 28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 68 (229)
T 2pze_A 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 68 (229)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEEC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEEC
Confidence 56788999999999999999999999999999998887654
No 62
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.44 E-value=1.5e-14 Score=95.68 Aligned_cols=41 Identities=22% Similarity=0.163 Sum_probs=37.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
++.+.+|+.++|+||||||||||+++|+|+++|..|.|...
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 65 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIK 65 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEEC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 56789999999999999999999999999999988887654
No 63
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.43 E-value=3.4e-14 Score=104.06 Aligned_cols=64 Identities=20% Similarity=0.147 Sum_probs=51.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++++|+.++|+||||||||||+++|+|+++|+.|++..++.........+.+.+++|++|++
T Consensus 363 ~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~ 426 (582)
T 3b60_A 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV 426 (582)
T ss_dssp EEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSC
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCC
Confidence 4668899999999999999999999999999999888876554323334445566799999986
No 64
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.43 E-value=6.3e-14 Score=93.22 Aligned_cols=76 Identities=45% Similarity=0.698 Sum_probs=65.2
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhh
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI 80 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~ 80 (102)
+..+|++++|.+.+++.+++.+.. +.+++.+.+++...+..++|+||+|+|||+++++++.....+.+.+...++.
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 356899999999999999998775 7788888888888888899999999999999999999888777666655543
No 65
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.43 E-value=3.7e-14 Score=104.11 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=51.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++++|+.++|+||||||||||+++|+|+++|..|++..++.........+.+.+++|++|++
T Consensus 364 sl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~ 427 (595)
T 2yl4_A 364 SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427 (595)
T ss_dssp EEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCC
Confidence 4668899999999999999999999999999999888876544323333345566799999985
No 66
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.43 E-value=3.7e-14 Score=104.06 Aligned_cols=64 Identities=22% Similarity=0.237 Sum_probs=53.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++++|+.++|+||||||||||+++|+|+++|..|++..++.........+.+.+++|++|++
T Consensus 363 sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 426 (587)
T 3qf4_A 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQET 426 (587)
T ss_dssp EEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCC
Confidence 3568899999999999999999999999999999888876655444455566777899999986
No 67
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.43 E-value=2.3e-14 Score=104.89 Aligned_cols=64 Identities=19% Similarity=0.177 Sum_probs=53.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++++|+.++|+||||||||||+++|+|+++|..|++..++.........+.+.+++|++|++
T Consensus 361 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 424 (578)
T 4a82_A 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDN 424 (578)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSC
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCC
Confidence 4668899999999999999999999999999999888876654434445556677899999985
No 68
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.42 E-value=3.5e-14 Score=104.00 Aligned_cols=64 Identities=19% Similarity=0.087 Sum_probs=50.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++++++|+.++|+||||||||||+++|+|+++|+.|++..++.........+.+.+++|++|++
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~ 426 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNV 426 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCC
Confidence 4668999999999999999999999999999998887765543223333345556799999986
No 69
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.41 E-value=1.7e-14 Score=96.36 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=36.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~ 75 (102)
++++.+|+.++|+||||||||||+++|+|+++|..|.|.
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 63 (253)
T 2nq2_C 25 NFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63 (253)
T ss_dssp EEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 467889999999999999999999999999999988875
No 70
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.40 E-value=5.9e-14 Score=94.27 Aligned_cols=59 Identities=22% Similarity=0.367 Sum_probs=46.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHc-cchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVA-LVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~q~~ 100 (102)
++.+. |+.++|+||||||||||+++|+|+. |+.|.+...+...... . . +++++ |++|++
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~-~-~-~~~i~~~v~Q~~ 84 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI-R-N-YIRYSTNLPEAY 84 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC-S-C-CTTEEECCGGGS
T ss_pred eEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch-H-H-hhheEEEeCCCC
Confidence 57789 9999999999999999999999999 9888886554221111 1 2 45688 999986
No 71
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.39 E-value=6.2e-14 Score=95.35 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=37.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
++.+.+|+.++|+||||||||||+++|+|+++|..|.+...
T Consensus 58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 98 (290)
T 2bbs_A 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 98 (290)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC
Confidence 46688999999999999999999999999999998888654
No 72
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.31 E-value=6.6e-13 Score=104.33 Aligned_cols=64 Identities=14% Similarity=0.048 Sum_probs=54.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+||||||||||+++|+|+++|..|.|..++...........+.+++|++|++
T Consensus 410 sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 473 (1284)
T 3g5u_A 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEP 473 (1284)
T ss_dssp EEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSC
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCC
Confidence 4668899999999999999999999999999999888876655445555666777899999986
No 73
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.29 E-value=3.4e-13 Score=106.18 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=56.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+||+|||||||+++|.++++|..|.|..++......+....|.++++|+|++
T Consensus 1099 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp 1162 (1321)
T 4f4c_A 1099 SFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEP 1162 (1321)
T ss_dssp EEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSC
T ss_pred eEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCC
Confidence 4678999999999999999999999999999999888777666556677778888999999996
No 74
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.28 E-value=1.1e-12 Score=103.32 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=56.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+++|+.++|+||+|||||||+++|.|+++|..|.|..++...+.......+.+++||+|++
T Consensus 438 sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~ 501 (1321)
T 4f4c_A 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEP 501 (1321)
T ss_dssp EEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSC
T ss_pred EEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcc
Confidence 4678999999999999999999999999999999998887766556667777888999999986
No 75
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.27 E-value=8.7e-13 Score=103.67 Aligned_cols=64 Identities=16% Similarity=0.114 Sum_probs=53.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++.+.+|+.++|+||||||||||+++|+|+++|..|.|..++...........+.+++|++|++
T Consensus 1053 sl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 1116 (1284)
T 3g5u_A 1053 SLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEP 1116 (1284)
T ss_dssp CEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSC
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCC
Confidence 4568899999999999999999999999999999998877655434444455566799999986
No 76
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.25 E-value=3.2e-12 Score=79.95 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=35.9
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
.++.+.+|+.++|+||||||||||+++|+|++ +..+.+...
T Consensus 26 vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~ 66 (158)
T 1htw_A 26 LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSP 66 (158)
T ss_dssp HHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCC
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEEC
Confidence 46789999999999999999999999999999 776666544
No 77
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.21 E-value=3.4e-13 Score=87.73 Aligned_cols=56 Identities=27% Similarity=0.209 Sum_probs=39.1
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
.+|+.++|+||||||||||+++|+|+ .|+.|.+...++. . ...+.+.+++|++|++
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~--~-~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILT--R-PAVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEE--E-CSCCTTCCCCSSCC--
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEec--C-CchhhhcceEEecCCH
Confidence 57999999999999999999999999 8877766432111 1 1112234578888864
No 78
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.20 E-value=1.1e-12 Score=85.50 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=25.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
++.+.+|+.++|+||||||||||+++|+|++
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5678899999999999999999999999988
No 79
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.19 E-value=4.5e-12 Score=86.57 Aligned_cols=39 Identities=23% Similarity=0.409 Sum_probs=33.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~ 75 (102)
++.+.+|++++|+|||||||||+++.|++++.+..+.+.
T Consensus 94 ~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~ 132 (302)
T 3b9q_A 94 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 132 (302)
T ss_dssp CCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 455678999999999999999999999999887655544
No 80
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.19 E-value=6.9e-11 Score=84.36 Aligned_cols=77 Identities=30% Similarity=0.329 Sum_probs=62.5
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC--ccEEEEccchhhhh
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS--ATFLRVVGSELIQK 82 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~--~~~~~i~~~~~~~~ 82 (102)
...|++++|.++.++.+.+.+... ..+..++..++|+||||||||+++++++..+. ..+..+.+.++...
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 346899999999999988776432 12344678899999999999999999999998 67888888888777
Q ss_pred ccCchHH
Q psy16321 83 YLGDGPK 89 (102)
Q Consensus 83 ~~~~~~~ 89 (102)
+.++.+.
T Consensus 105 ~~~~~~~ 111 (456)
T 2c9o_A 105 EIKKTEV 111 (456)
T ss_dssp SSCHHHH
T ss_pred hhhhhHH
Confidence 7777665
No 81
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.19 E-value=2e-12 Score=83.46 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=26.2
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
..+.+|++++|+||||||||||+++|+|+++
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5788999999999999999999999999985
No 82
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.18 E-value=4.5e-11 Score=85.37 Aligned_cols=78 Identities=21% Similarity=0.390 Sum_probs=60.1
Q ss_pred cccCChHHHHHHHHHHhhhhcCChHHHHhcCCC-CCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhh-hccCc
Q psy16321 9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIK-PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ-KYLGD 86 (102)
Q Consensus 9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~-~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~-~~~~~ 86 (102)
+.|+|.++.++.|...+..++++...+..+... ++.+++|+|||||||||++++|+..++..+..+....+.. .+.+.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 368999999999999987776655554444332 4568999999999999999999999999988888766655 35553
No 83
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.16 E-value=8.1e-11 Score=79.39 Aligned_cols=81 Identities=26% Similarity=0.415 Sum_probs=59.0
Q ss_pred cc-ccCChHHHHHHHHHHhhhhcCChHHHHhcCCC---CCceeEEECCCCCChhHHHHHHHhhhCc-------cEEEEcc
Q psy16321 8 LK-KRGSLDVQIQEIKESVELPLTHPEYYEEMGIK---PPKGVILYGPPGTGKTLLAKAVANQTSA-------TFLRVVG 76 (102)
Q Consensus 8 ~~-~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~---~~~~~~l~Gp~GsGKStl~~~i~~~~~~-------~~~~i~~ 76 (102)
++ +++|++++++.|++.+..... +.....+++. ++..++|+||+|+|||+++++++..+.. +...+..
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 44 799999999999998877543 4455555543 3446999999999999999999987632 5667776
Q ss_pred chhhhhccCchHH
Q psy16321 77 SELIQKYLGDGPK 89 (102)
Q Consensus 77 ~~~~~~~~~~~~~ 89 (102)
.++...+.+....
T Consensus 108 ~~l~~~~~g~~~~ 120 (309)
T 3syl_A 108 DDLVGQYIGHTAP 120 (309)
T ss_dssp GGTCCSSTTCHHH
T ss_pred HHhhhhcccccHH
Confidence 6665555554443
No 84
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.15 E-value=3.4e-11 Score=87.77 Aligned_cols=65 Identities=26% Similarity=0.348 Sum_probs=51.7
Q ss_pred ccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321 8 LKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 79 (102)
Q Consensus 8 ~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~ 79 (102)
++++.|++++++.+.+.+.+.. .++.+ ++..++|+|||||||||++++|++.+.++.+.+...+.
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~------~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQK------LTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHH------HSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHH------hcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 4568999999998877665432 12333 68899999999999999999999999999888876653
No 85
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.14 E-value=3.4e-12 Score=92.99 Aligned_cols=36 Identities=31% Similarity=0.369 Sum_probs=32.7
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321 40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75 (102)
Q Consensus 40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~ 75 (102)
+.+|++++|+||||||||||+++|+|+.+|..|.+.
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~ 344 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE 344 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 468999999999999999999999999998877664
No 86
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.13 E-value=3.8e-12 Score=93.89 Aligned_cols=36 Identities=31% Similarity=0.367 Sum_probs=32.7
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321 40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75 (102)
Q Consensus 40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~ 75 (102)
+.+|++++|+||||||||||+++|+|++.|..|.+.
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~ 414 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE 414 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 568999999999999999999999999998877664
No 87
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.13 E-value=1.3e-11 Score=86.06 Aligned_cols=39 Identities=23% Similarity=0.409 Sum_probs=33.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~ 75 (102)
++.+.+|++++|+|||||||||+++.|++++.+..+.+.
T Consensus 151 ~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~ 189 (359)
T 2og2_A 151 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 189 (359)
T ss_dssp CCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEE
Confidence 455678999999999999999999999999877655443
No 88
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.12 E-value=8.5e-12 Score=79.67 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=26.2
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
+.+.+|+.++|+||||||||||+++|+++.+
T Consensus 2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 2 NAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4456899999999999999999999999864
No 89
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.08 E-value=1.6e-11 Score=88.63 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=33.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~ 75 (102)
++.+.+|++++|+||||||||||+++|++++.+..+.|.
T Consensus 287 sl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~ 325 (503)
T 2yhs_A 287 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM 325 (503)
T ss_dssp CCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred eeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEE
Confidence 456778999999999999999999999999877655443
No 90
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.06 E-value=1e-10 Score=80.08 Aligned_cols=31 Identities=29% Similarity=0.530 Sum_probs=29.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
++.+++|+.++|+||||||||||+++|+|++
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 5789999999999999999999999999998
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.05 E-value=1.6e-10 Score=72.66 Aligned_cols=57 Identities=23% Similarity=0.273 Sum_probs=40.3
Q ss_pred cccccccCChH-HHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 5 YKALKKRGSLD-VQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 5 ~~~~~~i~g~~-~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
..+|++..+.. .+.+.+.... +...++.+.+++.++|+||||+|||||++++++.+.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIR-------VFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHH-------HHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred hCccccccCCCHHHHHHHHHHH-------HHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35777777633 2333332222 234566777899999999999999999999999875
No 92
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.05 E-value=8e-11 Score=78.84 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=35.5
Q ss_pred HHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc-EEEEc
Q psy16321 34 YYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT-FLRVV 75 (102)
Q Consensus 34 ~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~-~~~i~ 75 (102)
.+.++.+.+++.++|+|||||||||++++|++++++. .+.+.
T Consensus 16 vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~ 58 (261)
T 2eyu_A 16 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII 58 (261)
T ss_dssp HHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE
T ss_pred HHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE
Confidence 4555567899999999999999999999999998876 56554
No 93
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.05 E-value=8.8e-12 Score=89.38 Aligned_cols=37 Identities=22% Similarity=0.177 Sum_probs=33.6
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
.++.+.+|+.++|+||||||||||+|+|+|++.+..+
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 5677889999999999999999999999999887766
No 94
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.04 E-value=7e-11 Score=84.27 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=36.1
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
+.+.+|+.++|+||||||||||+++|+|+.+++.+.+...
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~ 191 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLI 191 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEE
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEe
Confidence 6788999999999999999999999999999987776544
No 95
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.04 E-value=2e-10 Score=72.63 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=32.4
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 79 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~ 79 (102)
.+.+|+.++|+|||||||||++++|++.+....+.+...++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 46789999999999999999999999985544555655443
No 96
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.02 E-value=5.2e-11 Score=77.91 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=29.5
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhhCc--cEEEEc
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSA--TFLRVV 75 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~--~~~~i~ 75 (102)
..++|+.++|+||||||||||+++|++..++ ..+.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~ 50 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVS 50 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEE
Confidence 3578999999999999999999999999875 345444
No 97
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.01 E-value=1.1e-10 Score=79.82 Aligned_cols=35 Identities=20% Similarity=0.150 Sum_probs=30.4
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
++++++|+|||||||||++++|++++.+..+.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l 135 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF 135 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 57899999999999999999999999887555543
No 98
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.01 E-value=3.9e-11 Score=92.29 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=37.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
++.+.+|+.++|+||||||||||+++|+|++.|..|.|...
T Consensus 693 Sl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~ 733 (986)
T 2iw3_A 693 NFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH 733 (986)
T ss_dssp EEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEEC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEc
Confidence 46688999999999999999999999999999998888654
No 99
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.00 E-value=6.8e-11 Score=85.71 Aligned_cols=61 Identities=16% Similarity=0.044 Sum_probs=42.8
Q ss_pred hc-CCCCCceeEEECCCCCChhHHHHH--HHhhhCccEEEE--ccchhhhhccCchHHHHHHccchhhh
Q psy16321 37 EM-GIKPPKGVILYGPPGTGKTLLAKA--VANQTSATFLRV--VGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~-~i~~~~~~~l~Gp~GsGKStl~~~--i~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
++ ++++|+.++|+||||||||||+++ ++|+.++..+.+ .+.+. . ....+...+++|++|++
T Consensus 32 ~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~--~-~~~~~~~~~~g~~~q~~ 97 (525)
T 1tf7_A 32 SHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET--P-QDIIKNARSFGWDLAKL 97 (525)
T ss_dssp TTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC--H-HHHHHHHGGGTCCHHHH
T ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC--H-HHHHHHHHHcCCChHHh
Confidence 45 678999999999999999999999 689887654444 33331 1 11122334688998875
No 100
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.98 E-value=4.2e-10 Score=77.14 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=42.5
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHh-hhCccE
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVAN-QTSATF 71 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~-~~~~~~ 71 (102)
.+++|+++.|.+..++.+++.+. .......++|+||||+||||+++++++ +..+..
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~------------~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~ 65 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSD------------QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGV 65 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTT------------CTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTC
T ss_pred CCCCHHHhcCCHHHHHHHHHHHh------------hCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 47789999999998888876651 011222389999999999999999999 555443
No 101
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.98 E-value=5.5e-10 Score=75.64 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=44.6
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHcc
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVAL 95 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (102)
....+.+++|+||||||||+++++|+..+..+.+.++..++...+.+..+...+..|
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f 88 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRY 88 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHH
Confidence 456678999999999999999999999999999999888887777776665544444
No 102
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.97 E-value=1.2e-10 Score=84.88 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=34.4
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
+++.+|++++|+||||||||||+++|+|+.+|..|.+..
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 327 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTP 327 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEES
T ss_pred ceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 346789999999999999999999999999998777643
No 103
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.97 E-value=4.7e-11 Score=80.30 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=29.4
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
.++|+||||||||||+++|+|+..+..+.+...+... .....+..+++++|+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i---~~~~~~~~i~~v~q~~ 56 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKI---PKTVEIKAIGHVIEEG 56 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------C---CCCCSCCEEEESCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCccc---CcceeeeeeEEEeecC
Confidence 5789999999999999999999998877765433211 1111223467777753
No 104
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.96 E-value=1.3e-10 Score=73.77 Aligned_cols=25 Identities=36% Similarity=0.659 Sum_probs=22.9
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
.++|+||||||||||+++|+|++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999999863
No 105
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.95 E-value=3e-10 Score=72.97 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=28.2
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321 40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV 74 (102)
Q Consensus 40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i 74 (102)
..+++.++|+||||||||||+++|++++++....+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v 37 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALL 37 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 35788999999999999999999999987533333
No 106
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.95 E-value=2.5e-10 Score=71.70 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=23.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHH
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAK 61 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~ 61 (102)
++.+.+|+.++|+||||||||||++
T Consensus 3 sl~i~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 3 KLTIPELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEESSEEEEEECCTTSCHHHHHH
T ss_pred cccCCCCEEEEEECCCCCCHHHHHH
Confidence 4667899999999999999999999
No 107
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.95 E-value=1.4e-10 Score=79.52 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=28.5
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 40 IKPPKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
+.++++++|.||||||||||+++|++++.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 6789999999999999999999999998763
No 108
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.94 E-value=3e-10 Score=74.24 Aligned_cols=28 Identities=36% Similarity=0.485 Sum_probs=26.1
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHH--hh
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVA--NQ 66 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~--~~ 66 (102)
++++|+.++|+||||||||||+++|+ +.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999 55
No 109
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.94 E-value=1.8e-09 Score=74.23 Aligned_cols=60 Identities=27% Similarity=0.362 Sum_probs=44.9
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~ 71 (102)
..++++++.|.+.+++.+...+..... . + .+.+.++|+||||+|||||+++|++.+....
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~-----~--~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKM-----R--G-EVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHH-----H--T-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHh-----c--C-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 467889999988888877766543210 0 1 2346899999999999999999999986543
No 110
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.94 E-value=8.6e-10 Score=70.58 Aligned_cols=30 Identities=37% Similarity=0.622 Sum_probs=25.4
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
...+++.++|+|||||||||++++|++.+.
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 345789999999999999999999999874
No 111
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.94 E-value=3.5e-11 Score=77.19 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=35.5
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR 100 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~ 100 (102)
|+.++|+||||||||||+++|++++. ..+ +.......... ...+.+++|++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec
Confidence 57899999999999999999999986 544 43332211111 11234567777653
No 112
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=1.2e-09 Score=79.10 Aligned_cols=76 Identities=22% Similarity=0.295 Sum_probs=55.6
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCC-hHHHHhcCC---CCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTH-PEYYEEMGI---KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 79 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~-~~~~~~~~i---~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~ 79 (102)
.+++|+++.|.+..++.|++.+...... +..+...+. .....++|+||+|+||||++++++..+......++..+.
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~ 113 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV 113 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSC
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 4678999999999999999887642111 111111121 245689999999999999999999999887777766543
No 113
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.94 E-value=1e-09 Score=70.73 Aligned_cols=38 Identities=32% Similarity=0.301 Sum_probs=31.7
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHhhhCc---cEEEEccc
Q psy16321 40 IKPPKGVILYGPPGTGKTLLAKAVANQTSA---TFLRVVGS 77 (102)
Q Consensus 40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~---~~~~i~~~ 77 (102)
..+++.++|+||||||||||+++|++++.+ ..+.+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d 59 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD 59 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecC
Confidence 467999999999999999999999999874 35555543
No 114
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.93 E-value=1.6e-10 Score=79.91 Aligned_cols=64 Identities=19% Similarity=0.084 Sum_probs=42.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEE--ccchhhhhcc--CchHHHHHHccchhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV--VGSELIQKYL--GDGPKLVRVALVPEVR 100 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i--~~~~~~~~~~--~~~~~~~~~~~~~q~~ 100 (102)
++.+.+++.++|+||||||||||+++|++++.+..+.+ ...+...... .....+.++++++|++
T Consensus 49 ~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~ 116 (337)
T 2qm8_A 49 LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDR 116 (337)
T ss_dssp GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCT
T ss_pred CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCc
Confidence 35678999999999999999999999999887654333 3333322111 0011234577777764
No 115
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.92 E-value=1.1e-10 Score=79.49 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=28.7
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
+..++.++|+||||+|||||+++|+|+..+..+.+..
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 3468899999999999999999999999998887764
No 116
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.92 E-value=4e-10 Score=82.14 Aligned_cols=55 Identities=22% Similarity=0.227 Sum_probs=39.0
Q ss_pred HHHHHHhhhhcCChH-HHHhc-CCCCCceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321 19 QEIKESVELPLTHPE-YYEEM-GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73 (102)
Q Consensus 19 ~~i~~~~~~~~~~~~-~~~~~-~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~ 73 (102)
.++.+.+.+.+.... ...++ .+.+|+.++|+||||||||||+++|+|++.|+.|.
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred hhHhcCcEEEECCccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 334444544443321 23444 47899999999999999999999999999887665
No 117
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.92 E-value=2.6e-10 Score=82.17 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=35.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
++.+.+ ++++|+||||||||||+++|+|++.|+.|.+...
T Consensus 24 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 63 (483)
T 3euj_A 24 TFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFR 63 (483)
T ss_dssp EEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCC
T ss_pred EEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEEC
Confidence 567888 9999999999999999999999999987766544
No 118
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.92 E-value=3.4e-09 Score=72.34 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=52.1
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~ 78 (102)
+.+|+++.|.+..++.+...+...... -.+...++|+||+|+|||+++++++......+..++...
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~ 90 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPM 90 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh
Confidence 568999999999999998887643211 123457999999999999999999999887777766543
No 119
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.91 E-value=1.4e-09 Score=74.99 Aligned_cols=36 Identities=28% Similarity=0.312 Sum_probs=31.0
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321 40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75 (102)
Q Consensus 40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~ 75 (102)
..+|++++|+|||||||||+++.|++++.+..+.+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~ 161 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVV 161 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEE
Confidence 367899999999999999999999999887655443
No 120
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.91 E-value=3.5e-10 Score=73.85 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=22.0
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHH-hhhC
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVA-NQTS 68 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~-~~~~ 68 (102)
.++.+.+|+.++|+|||||||||++++|+ ++++
T Consensus 20 ~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 20 GSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred CCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 46778899999999999999999999999 9873
No 121
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.90 E-value=3.4e-10 Score=82.55 Aligned_cols=35 Identities=26% Similarity=0.234 Sum_probs=31.8
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321 40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV 74 (102)
Q Consensus 40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i 74 (102)
..+|++++|+||||||||||+++|+|++.|+.|.+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 45799999999999999999999999999887765
No 122
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.89 E-value=9e-10 Score=72.60 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=26.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
+|.+.++..++|.|||||||||++++|++++.
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56788999999999999999999999999764
No 123
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.88 E-value=4.7e-10 Score=82.84 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=33.0
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV 74 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i 74 (102)
.+.+|+.++|+||||||||||+++|+|++.|+.|.+
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 467899999999999999999999999999987766
No 124
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.88 E-value=2.1e-09 Score=72.16 Aligned_cols=71 Identities=20% Similarity=0.334 Sum_probs=51.3
Q ss_pred cccCChHHHHHHHHHHhhhhcCChHHHHhcC-CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321 9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 79 (102)
Q Consensus 9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~-i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~ 79 (102)
+++.|.++.++.+...+..++....+...+. -..+..++|+||+|+|||+++++++..+......++..+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~ 86 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhc
Confidence 4589999999999888765332221111111 1245689999999999999999999999888777776554
No 125
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.88 E-value=1.6e-09 Score=69.04 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=27.8
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~ 71 (102)
.+.+|+.++|+|||||||||+++.|++.+.+..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~ 34 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSY 34 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCCE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCe
Confidence 567899999999999999999999999885543
No 126
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.87 E-value=4.3e-10 Score=78.32 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=36.7
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~ 78 (102)
-++.+.+|+.++|+||||||||||+++|++++++..+.+...+
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~ 210 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIED 210 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEES
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECC
Confidence 4567889999999999999999999999999988766665443
No 127
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.87 E-value=7.7e-10 Score=71.00 Aligned_cols=28 Identities=39% Similarity=0.673 Sum_probs=23.8
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
++++.++|+||||||||||+++|+++++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4678999999999999999999999875
No 128
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.87 E-value=2.5e-10 Score=78.76 Aligned_cols=41 Identities=27% Similarity=0.274 Sum_probs=35.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
++.+.+++.++|+||||||||||+++|++++++..+.+...
T Consensus 165 ~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~ 205 (330)
T 2pt7_A 165 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 205 (330)
T ss_dssp HHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEE
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEEC
Confidence 45677899999999999999999999999998876665544
No 129
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.86 E-value=1.7e-09 Score=68.50 Aligned_cols=28 Identities=29% Similarity=0.578 Sum_probs=24.8
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
++.++|+||||||||||+++|++++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 4689999999999999999999988643
No 130
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.86 E-value=2.8e-09 Score=72.62 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=30.6
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhC--ccEEEEcc
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTS--ATFLRVVG 76 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~--~~~~~i~~ 76 (102)
.+++.++|+||||||||||+++|++++. +..+.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence 6789999999999999999999999987 66554433
No 131
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.85 E-value=1.7e-09 Score=75.16 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=34.9
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
+.+.+|+.++|+||||||||||+++|++...++.+.+..
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~ 104 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLAL 104 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEE
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEE
Confidence 678899999999999999999999999999988766543
No 132
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.85 E-value=8.6e-09 Score=70.02 Aligned_cols=63 Identities=25% Similarity=0.274 Sum_probs=51.0
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~ 78 (102)
.+++|+++.|.++.++.+++.+.. -..+..+++.||+|+|||+++++++..+......++..+
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~ 83 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred CCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc
Confidence 467899999999999999887751 123356788899999999999999999988887777544
No 133
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.84 E-value=9.7e-10 Score=81.13 Aligned_cols=35 Identities=34% Similarity=0.344 Sum_probs=32.2
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~ 73 (102)
.+.+|+.++|+||||||||||+++|+|++.|+.|.
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 47899999999999999999999999999887665
No 134
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.82 E-value=1.5e-09 Score=70.03 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=28.0
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
++++|+.++|+||||||||||+++|++...+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 5789999999999999999999999996544
No 135
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.81 E-value=4.7e-09 Score=72.64 Aligned_cols=71 Identities=21% Similarity=0.244 Sum_probs=51.0
Q ss_pred ccCChHHHHHHHHHHhhhhcCChHHHHh-cCC-CCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhh
Q psy16321 10 KRGSLDVQIQEIKESVELPLTHPEYYEE-MGI-KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI 80 (102)
Q Consensus 10 ~i~g~~~~~~~i~~~~~~~~~~~~~~~~-~~i-~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~ 80 (102)
.|.|.+..++.+...+...+........ ... .++..++|+||||||||+++++|+..+..+++.++..++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~ 88 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT 88 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhc
Confidence 3689999999998888543322111000 111 2567899999999999999999999998888888766543
No 136
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.81 E-value=1.5e-09 Score=68.54 Aligned_cols=35 Identities=17% Similarity=0.110 Sum_probs=29.4
Q ss_pred ceeEEECCCCCChhHHHHHHHhhhCcc---EEEEccch
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQTSAT---FLRVVGSE 78 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~---~~~i~~~~ 78 (102)
+.++|+||||||||||++.|++++.+. .+.+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 578999999999999999999999886 77776554
No 137
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.81 E-value=1.3e-08 Score=63.17 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=41.0
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
...|+++.|.++.++.+.+.+.. ..+..++|+||+|+|||++++.++..+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999988888776532 345679999999999999999999876
No 138
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.81 E-value=1.5e-09 Score=75.86 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=35.4
Q ss_pred HHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc-EEEE
Q psy16321 33 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT-FLRV 74 (102)
Q Consensus 33 ~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~-~~~i 74 (102)
+.+.++.+.+++.++|+|||||||||++++|++++++. .+.+
T Consensus 126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I 168 (372)
T 2ewv_A 126 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI 168 (372)
T ss_dssp SSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEE
T ss_pred HHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEE
Confidence 34566668899999999999999999999999998875 4555
No 139
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.81 E-value=2.2e-08 Score=68.91 Aligned_cols=68 Identities=25% Similarity=0.337 Sum_probs=49.1
Q ss_pred ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc--cEEEEccchhhh
Q psy16321 6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA--TFLRVVGSELIQ 81 (102)
Q Consensus 6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~--~~~~i~~~~~~~ 81 (102)
.+|+++.|.+..++.+....... . -...++..++|+||+|+|||+++++++..+.. +...+....+..
T Consensus 41 ~~~~~ivG~~~~~~~l~~l~~~~-------~-~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 41 QASQGMVGQLAARRAAGVVLEMI-------R-EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp SEETTEESCHHHHHHHHHHHHHH-------H-TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cchhhccChHHHHHHHHHHHHHH-------H-cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 34999999999988776554321 1 12244679999999999999999999998875 345555544433
No 140
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=5e-09 Score=66.96 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=28.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~ 73 (102)
++.+.+++.++|+|||||||||+++.|+..+....+.
T Consensus 19 ~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~ 55 (199)
T 3vaa_A 19 YFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFID 55 (199)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 4567788999999999999999999999988766543
No 141
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.79 E-value=6.5e-10 Score=73.78 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=23.9
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
.++..++|.|||||||||++++|+..+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 567899999999999999999999443
No 142
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.79 E-value=9.7e-09 Score=72.04 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=30.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
++++++++.++|+||||||||||+++|++.....
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~ 196 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGK 196 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCc
Confidence 3578999999999999999999999999986543
No 143
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.78 E-value=1.6e-08 Score=70.27 Aligned_cols=69 Identities=20% Similarity=0.249 Sum_probs=49.6
Q ss_pred ccCChHHHHHHHHHHhhhhcCChHHH------------------HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321 10 KRGSLDVQIQEIKESVELPLTHPEYY------------------EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71 (102)
Q Consensus 10 ~i~g~~~~~~~i~~~~~~~~~~~~~~------------------~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~ 71 (102)
.+.|.+..++.|...+...+...... ... ..+...++|+||+|+|||+++++++..+..++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~-~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEV-ELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHT-TCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccccccccccc-ccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 47899999999988874333222210 111 23456799999999999999999999988777
Q ss_pred EEEccchh
Q psy16321 72 LRVVGSEL 79 (102)
Q Consensus 72 ~~i~~~~~ 79 (102)
..++...+
T Consensus 101 ~~~~~~~~ 108 (376)
T 1um8_A 101 AISDATSL 108 (376)
T ss_dssp EEEEGGGC
T ss_pred EEecchhh
Confidence 77765543
No 144
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.78 E-value=9.9e-09 Score=69.43 Aligned_cols=66 Identities=26% Similarity=0.395 Sum_probs=50.9
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
.+.+|+++.|.+..++.+.+.+.... ... .....++|+||+|+|||+++++++.........+...
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~-------~~~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 72 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAK-------ARK-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGP 72 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHH-------HHC-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTT
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHH-------ccC-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence 46689999999999999888775421 101 2346899999999999999999999887766666544
No 145
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.76 E-value=3.3e-09 Score=73.69 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=32.3
Q ss_pred HhcCCCC--CceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321 36 EEMGIKP--PKGVILYGPPGTGKTLLAKAVANQTSATF 71 (102)
Q Consensus 36 ~~~~i~~--~~~~~l~Gp~GsGKStl~~~i~~~~~~~~ 71 (102)
-++.+.+ ++.++|+||||||||||+++|+|++++..
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 4456777 99999999999999999999999999887
No 146
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.75 E-value=6e-09 Score=65.73 Aligned_cols=28 Identities=18% Similarity=0.415 Sum_probs=25.4
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
.+++.++|+||||||||||+++|++..+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999999999875
No 147
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.75 E-value=2.7e-09 Score=74.30 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=30.9
Q ss_pred HHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 34 YYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 34 ~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
.+.++...+++.++|+|||||||||++++|++++++.
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 4445555678899999999999999999999998765
No 148
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.75 E-value=8.4e-09 Score=64.09 Aligned_cols=29 Identities=31% Similarity=0.663 Sum_probs=25.9
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSATF 71 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~ 71 (102)
+..++|+|||||||||+++.|++.+.+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~ 32 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEF 32 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 56899999999999999999999887644
No 149
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.74 E-value=1.5e-08 Score=69.46 Aligned_cols=53 Identities=26% Similarity=0.389 Sum_probs=41.5
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
.+.+|+++.|.+.+++.|+..+.. -.++ .++|+||||+||||+++++++.+.+
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~----------g~~~---~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDE----------GKLP---HLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHT----------TCCC---CEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc----------CCCc---eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 467899999999888888776642 0111 3899999999999999999998643
No 150
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.74 E-value=2.1e-08 Score=62.25 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=40.4
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
...|+++.|.+..++.+.+.+.. .....++|+||+|+|||++++.++..+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred ccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35688999999888877766532 335678999999999999999999876
No 151
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.73 E-value=7.7e-10 Score=75.36 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=30.1
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
+..++.++|+||||+|||||+++|+ +..+..+.+..
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~ 197 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSE 197 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence 3468899999999999999999999 88888777654
No 152
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.73 E-value=5.9e-09 Score=77.00 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=27.9
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLR 73 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~ 73 (102)
|++++|+||||||||||+++|+|+.+|+.|.
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~ 408 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGALKPDEGQ 408 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 3789999999999999999999999887653
No 153
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.72 E-value=2.6e-09 Score=75.79 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=29.4
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV 74 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i 74 (102)
.+++.++|+|||||||||++++|++++++..+.|
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I 198 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNI 198 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEE
Confidence 5778999999999999999999999988764443
No 154
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.71 E-value=1.1e-09 Score=77.64 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=27.6
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSATFLRVV 75 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~ 75 (102)
.++|+||||+|||||+++|+|+..+..+.+.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~ 101 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAK 101 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEE
Confidence 9999999999999999999999887766554
No 155
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.71 E-value=7.1e-10 Score=81.81 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=30.7
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCc-cEEEEccchhh--hhc-cCchHHHHHHccchhhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSA-TFLRVVGSELI--QKY-LGDGPKLVRVALVPEVR 100 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~-~~~~i~~~~~~--~~~-~~~~~~~~~~~~~~q~~ 100 (102)
.++|+||||||||||+++|+|+..| ..|.+...+.. ... ....+.+..++|++|+.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~ 106 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEI 106 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---C
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccc
Confidence 3999999999999999999999877 56766544321 111 11112234567777653
No 156
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.71 E-value=1.1e-08 Score=65.42 Aligned_cols=32 Identities=22% Similarity=0.171 Sum_probs=28.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
++...+++.++|+|||||||||++++|++.+.
T Consensus 19 ~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 19 RLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34457899999999999999999999999875
No 157
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.70 E-value=3.4e-08 Score=70.58 Aligned_cols=61 Identities=28% Similarity=0.419 Sum_probs=48.4
Q ss_pred ccccccccCChHHHH---HHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 4 SYKALKKRGSLDVQI---QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~---~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
.+++|+++.|.+..+ +.|+..+... ....++|+||+|+||||++++|+......+..++..
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~ 84 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAV 84 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec
Confidence 357899999999888 6666655421 124799999999999999999999998888777654
No 158
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.70 E-value=3.2e-09 Score=68.42 Aligned_cols=31 Identities=32% Similarity=0.419 Sum_probs=27.6
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
++.+|+.++|+||||||||||++.+++...+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999999999987643
No 159
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.68 E-value=1.3e-08 Score=65.56 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=26.5
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
.+|+.++|+|||||||||+++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 56889999999999999999999998765
No 160
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.68 E-value=2.5e-08 Score=73.40 Aligned_cols=52 Identities=27% Similarity=0.434 Sum_probs=42.9
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
..+.|+++.|.+..++.+...+. .++.++|+|||||||||++++|++++++.
T Consensus 36 rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 36 PEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp CSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred cccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 45678899998888877665542 45799999999999999999999998765
No 161
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.68 E-value=4.5e-09 Score=76.24 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=32.0
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~ 75 (102)
+.+..++.++|+|||||||||++++|+++.++..+.+.
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giit 292 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVS 292 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEE
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEE
Confidence 44568899999999999999999999999988754443
No 162
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.68 E-value=2.3e-08 Score=61.62 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=25.2
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
+++.++|+||||+|||||++++++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 788999999999999999999999874
No 163
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.68 E-value=4.9e-08 Score=61.90 Aligned_cols=50 Identities=36% Similarity=0.414 Sum_probs=40.9
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
...|+++.|.++.++.+++.+... ....++|+||+|+|||++++.++..+
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999988876431 22349999999999999999999864
No 164
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.66 E-value=1.2e-08 Score=72.52 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=28.8
Q ss_pred HHhcCCCCCce--eEEECCCCCChhHHHHHHHhhh
Q psy16321 35 YEEMGIKPPKG--VILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 35 ~~~~~i~~~~~--~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
..++.+.+|+. ++|+||||+|||||+++|+|..
T Consensus 32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 34678999999 9999999999999999999973
No 165
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.65 E-value=2.7e-08 Score=61.97 Aligned_cols=29 Identities=34% Similarity=0.449 Sum_probs=25.6
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
.+++.++|+|||||||||+++.|++.+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 35789999999999999999999998754
No 166
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.65 E-value=1.4e-08 Score=81.75 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=43.9
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCC----------hHHHHh---------------c---CCCCCceeEEECCCCCCh
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTH----------PEYYEE---------------M---GIKPPKGVILYGPPGTGK 56 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~----------~~~~~~---------------~---~i~~~~~~~l~Gp~GsGK 56 (102)
.++|++++|+++.++++.+.+.+++.+ ++.+.. + +++.|+.++++||+||||
T Consensus 1016 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GK 1095 (1706)
T 3cmw_A 1016 GSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGK 1095 (1706)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSH
T ss_pred CceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCCh
Confidence 478999999999999999999988843 333333 1 145778899999999999
Q ss_pred hHHHHHHHhhh
Q psy16321 57 TLLAKAVANQT 67 (102)
Q Consensus 57 Stl~~~i~~~~ 67 (102)
|+|+++++...
T Consensus 1096 T~la~~~~~~~ 1106 (1706)
T 3cmw_A 1096 TTLTLQVIAAA 1106 (1706)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 167
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.65 E-value=7.5e-08 Score=61.59 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=42.4
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
....|+++.|.+..++.+.+.+... ..+..++|+||+|+||||+++.++..+.
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999888876431 1234789999999999999999998654
No 168
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.65 E-value=5.2e-09 Score=68.88 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=25.9
Q ss_pred CCceeEEECCCCCChhHHHHHHH---hhhCccEE
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVA---NQTSATFL 72 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~---~~~~~~~~ 72 (102)
.++.++|+|||||||||++++|+ |+..++.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G 59 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSG 59 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHH
Confidence 46899999999999999999999 66555433
No 169
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.63 E-value=6.8e-08 Score=63.95 Aligned_cols=62 Identities=23% Similarity=0.230 Sum_probs=41.4
Q ss_pred ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC---ccEEEEccch
Q psy16321 6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS---ATFLRVVGSE 78 (102)
Q Consensus 6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~---~~~~~i~~~~ 78 (102)
.+|+++.|.+..+..+.+.+.... ..+..++|+||+|+|||+++++|+.... .++..++...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 378999999988888877665422 2346899999999999999999998764 3456665543
No 170
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.63 E-value=4.3e-10 Score=74.04 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=29.8
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
+++.+ ++++|+||||||||||+++|++++.+..+.+..
T Consensus 23 ~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~ 60 (227)
T 1qhl_A 23 FDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHF 60 (227)
T ss_dssp ECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--
T ss_pred EEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEE
Confidence 44443 678999999999999999999999887655543
No 171
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.63 E-value=2.5e-08 Score=68.04 Aligned_cols=52 Identities=27% Similarity=0.415 Sum_probs=41.2
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
.+.+|+++.|.++.++.+...+.. .....++|+||+|+||||+++++++.+.
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456889999999988888776542 1112489999999999999999999754
No 172
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.62 E-value=1.5e-08 Score=68.24 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=30.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
++++.+|+.++|.||||+|||||++.|++...+.
T Consensus 29 ~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 29 TLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp HCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred hcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999987654
No 173
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.62 E-value=1.8e-08 Score=63.22 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=26.3
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
+.+.++ ..+|+|||||||||++++|..++.+
T Consensus 22 ~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 22 IPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 455555 8899999999999999999997754
No 174
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.61 E-value=8.5e-09 Score=76.64 Aligned_cols=24 Identities=42% Similarity=0.559 Sum_probs=22.4
Q ss_pred hcCCCCCceeEEECCCCCChhHHH
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLA 60 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~ 60 (102)
+|++++|+.++|+||||||||||+
T Consensus 38 sl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 38 DVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHH
T ss_pred EEEECCCCEEEEECCCCCCHHHHh
Confidence 567899999999999999999998
No 175
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.61 E-value=3.2e-08 Score=63.87 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=26.7
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
+++...+++.++|+||||+|||||++.|++..+
T Consensus 12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 12 ENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ----CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred ccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456666899999999999999999999998765
No 176
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.59 E-value=2.6e-08 Score=66.30 Aligned_cols=37 Identities=32% Similarity=0.493 Sum_probs=31.8
Q ss_pred hcCCCC---CceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321 37 EMGIKP---PKGVILYGPPGTGKTLLAKAVANQTSATFLR 73 (102)
Q Consensus 37 ~~~i~~---~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~ 73 (102)
++.+.+ ++.++|+|++||||||+++.|++.+....+.
T Consensus 39 ~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 39 AEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp HHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred hhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 466777 9999999999999999999999988765543
No 177
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.58 E-value=1.7e-07 Score=62.24 Aligned_cols=66 Identities=23% Similarity=0.347 Sum_probs=43.8
Q ss_pred cccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
+.+.|.+...+.+....... ..........+...++|+||+|+|||+++++++.....++..+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~ 98 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP 98 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECG
T ss_pred cCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCH
Confidence 34556665555554431110 1222333345677899999999999999999999988877777554
No 178
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.58 E-value=1.2e-08 Score=74.68 Aligned_cols=33 Identities=27% Similarity=0.280 Sum_probs=29.4
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~ 71 (102)
.+.+|+.++|+|+|||||||++++|++.+.+..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~ 397 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMG 397 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTC
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccC
Confidence 356899999999999999999999999987654
No 179
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.58 E-value=2.4e-08 Score=63.04 Aligned_cols=25 Identities=40% Similarity=0.537 Sum_probs=22.2
Q ss_pred CceeEEECCCCCChhHHHHHHHhhh
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
++.++|+|||||||||+++.|++..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc
Confidence 4678999999999999999999843
No 180
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.57 E-value=4.6e-09 Score=71.90 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=25.0
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
.+.+|+.++|+||||+|||||+++|++...+..+.+..
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 35579999999999999999999999998887776653
No 181
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.57 E-value=2.7e-08 Score=69.39 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=28.7
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhC-ccEEEEcc
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTS-ATFLRVVG 76 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~-~~~~~i~~ 76 (102)
+|+.++|+||||+|||||+++|+|... +..+.+..
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~ 249 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSN 249 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccCCccc
Confidence 688999999999999999999999988 77666643
No 182
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.57 E-value=1.1e-07 Score=57.88 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=39.3
Q ss_pred ccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh---CccEEEEccch
Q psy16321 10 KRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT---SATFLRVVGSE 78 (102)
Q Consensus 10 ~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~---~~~~~~i~~~~ 78 (102)
++.|-+..+.++.+.+... ...+..++|+||+|||||+++++|+... ..++. ++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~ 61 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELT 61 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECC
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCC
Confidence 4667777777777666432 1345679999999999999999999875 23344 55443
No 183
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.57 E-value=4e-09 Score=73.89 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=27.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
++.+.+| .++|+||||||||||+++|.+++.
T Consensus 55 ~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 55 ELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred EEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567888 999999999999999999988775
No 184
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.57 E-value=1.3e-07 Score=63.65 Aligned_cols=51 Identities=25% Similarity=0.341 Sum_probs=41.6
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
.+.+|+++.|.+..++.++..+... ....++|+||+|+||||++++++..+
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTG-------------SMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3567999999999999988776421 12259999999999999999999875
No 185
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.57 E-value=3.3e-08 Score=64.18 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=26.1
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
++++|+.++|+||||+|||||++.+++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999999999994
No 186
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.56 E-value=2.2e-07 Score=62.43 Aligned_cols=63 Identities=25% Similarity=0.389 Sum_probs=43.8
Q ss_pred cccCChHHHHHHHHHHhhhhcCChHHHHhcC--CCCCceeEEECCCCCChhHHHHHHHhhhCcc---EEEEccc
Q psy16321 9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMG--IKPPKGVILYGPPGTGKTLLAKAVANQTSAT---FLRVVGS 77 (102)
Q Consensus 9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~--i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~---~~~i~~~ 77 (102)
+++.|.+..++.+...+.... ..+. -.+...++|+||||||||+++++|+..+... ...+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~------~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~ 84 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRAR------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 84 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHH------HTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred hhcCCHHHHHHHHHHHHHHHh------cCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence 467788888888888775421 1111 1234579999999999999999999987432 4555443
No 187
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.55 E-value=7.9e-08 Score=59.87 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=27.3
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~ 75 (102)
+..+.|.|+|||||||+++.|+..++...+.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~ 35 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG 35 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEec
Confidence 467899999999999999999998776555443
No 188
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.54 E-value=1.3e-07 Score=64.46 Aligned_cols=54 Identities=22% Similarity=0.206 Sum_probs=39.4
Q ss_pred ccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321 8 LKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76 (102)
Q Consensus 8 ~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~ 76 (102)
++++.|.++.++.+...+. .+..++|+||||+|||+++++++..+......+..
T Consensus 26 ~~~i~g~~~~~~~l~~~l~---------------~~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~ 79 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGIC---------------TGGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQF 79 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHH---------------HTCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccceeCcHHHHHHHHHHHH---------------cCCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEec
Confidence 4556666666655544332 14689999999999999999999988777665554
No 189
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.54 E-value=3.8e-08 Score=63.02 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=27.2
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 40 IKPPKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
..++..++|.|||||||||+++.|++.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~ 49 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ 49 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 4678899999999999999999999987543
No 190
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.53 E-value=3.9e-08 Score=68.21 Aligned_cols=30 Identities=33% Similarity=0.414 Sum_probs=28.2
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
.++++|+.+.|+||||||||||++.+++..
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999999999987
No 191
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.53 E-value=2.5e-07 Score=62.53 Aligned_cols=37 Identities=30% Similarity=0.541 Sum_probs=28.8
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
..+..++|.|||||||||+++.|+..++.....++.+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D 67 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDND 67 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEech
Confidence 4567899999999999999999998764344555543
No 192
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.53 E-value=1.2e-07 Score=63.62 Aligned_cols=51 Identities=37% Similarity=0.430 Sum_probs=41.1
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
.+.+|+++.|.+..++.+++.+.. .....++|+||+|+|||+++++++..+
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 467899999999999988876542 112248999999999999999999875
No 193
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.53 E-value=1.7e-07 Score=64.25 Aligned_cols=60 Identities=22% Similarity=0.285 Sum_probs=45.6
Q ss_pred ccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh------CccEEEEcc
Q psy16321 8 LKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT------SATFLRVVG 76 (102)
Q Consensus 8 ~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~------~~~~~~i~~ 76 (102)
.+++.|-++.++.+.+.+..... -..+..++|+||+|+|||||++.+++.. ....+.+++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 47889999999988877643211 1456789999999999999999999977 444555553
No 194
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.53 E-value=9.3e-08 Score=65.18 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=38.5
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
+..+|+++.|.+..+..+...... .....++|+||+|+|||+++++++....
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 346899999999876654332211 1223599999999999999999999775
No 195
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.53 E-value=2.2e-07 Score=63.70 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=46.3
Q ss_pred ccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh---------CccEEEEccc
Q psy16321 8 LKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT---------SATFLRVVGS 77 (102)
Q Consensus 8 ~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~---------~~~~~~i~~~ 77 (102)
.+++.|.++.++.+.+.+..... -..+..++|+||+|+||||+++.++..+ ......+++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 37899999999988887643221 2456789999999999999999999877 4455556543
No 196
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.52 E-value=3.1e-08 Score=60.33 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=40.6
Q ss_pred ccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321 10 KRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 79 (102)
Q Consensus 10 ~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~ 79 (102)
++.|.+..++.+++.+.... .....++|+||+|+|||+++++|+.... ++..++..++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~ 62 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEY 62 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTH
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhC
Confidence 45677788888877765321 2346799999999999999999998766 5555554443
No 197
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.52 E-value=9.5e-08 Score=61.66 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=24.6
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
+..++|+|||||||||+++.|++.++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~ 32 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWH 32 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4579999999999999999999987643
No 198
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.52 E-value=2.7e-08 Score=76.76 Aligned_cols=29 Identities=34% Similarity=0.626 Sum_probs=26.5
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVAN 65 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~ 65 (102)
++.+.+|+.++|+||||||||||+++|++
T Consensus 455 sl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 455 QLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45678999999999999999999999995
No 199
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.51 E-value=2.6e-07 Score=63.40 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=43.4
Q ss_pred ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
.+.+|+++.|.+..++.+++.+... ..+..++|+||+|+||||++++++..+..
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4578999999999999988876421 12346899999999999999999987654
No 200
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.51 E-value=2.5e-07 Score=63.71 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=40.6
Q ss_pred cccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
+++.|.++.++.+.+.+..... -..+..++|+||+|+||||+++.++..+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999887754222 1345689999999999999999999876
No 201
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.50 E-value=5.9e-08 Score=66.34 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=28.0
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
...+++.++++||||+||||++..|++.+.+.
T Consensus 100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 100 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 34678899999999999999999999988654
No 202
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.49 E-value=1.2e-07 Score=59.87 Aligned_cols=36 Identities=31% Similarity=0.485 Sum_probs=28.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhh-hCccEE
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQ-TSATFL 72 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~-~~~~~~ 72 (102)
++....+..++|+|++||||||+++.|+.. +....+
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 345566788999999999999999999987 554443
No 203
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.49 E-value=2e-07 Score=66.75 Aligned_cols=50 Identities=28% Similarity=0.393 Sum_probs=40.5
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
...++.+.|-++.+..+.+.+.. .....++|+||||+|||+++++++..+
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred cCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34678999999998888776542 233478999999999999999999976
No 204
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.49 E-value=3.1e-07 Score=63.19 Aligned_cols=58 Identities=22% Similarity=0.269 Sum_probs=44.0
Q ss_pred cccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCc--eeEEECCCCCChhHHHHHHHhhhCc----cEEEEc
Q psy16321 9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPK--GVILYGPPGTGKTLLAKAVANQTSA----TFLRVV 75 (102)
Q Consensus 9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~--~~~l~Gp~GsGKStl~~~i~~~~~~----~~~~i~ 75 (102)
+++.|-++.++.+.+.+...... ..+. .++|+||+|+||||+++.+++.+.. ....++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 78999999999988877542211 2344 8999999999999999999998743 344554
No 205
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.48 E-value=1.5e-07 Score=58.87 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=27.8
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhh---CccEEEEc
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQT---SATFLRVV 75 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~---~~~~~~i~ 75 (102)
.+|..++|.|++||||||+++.|++.+ ..+.+.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 357889999999999999999999987 43444444
No 206
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.48 E-value=5.4e-07 Score=58.00 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=35.5
Q ss_pred ccccccCCh---HHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 6 KALKKRGSL---DVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 6 ~~~~~i~g~---~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
.+|+++.+- ...++.++..... ..+..++|+||+|+||||++++++..+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 577888762 3444444443321 2467899999999999999999998764
No 207
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.48 E-value=1.8e-07 Score=61.89 Aligned_cols=39 Identities=23% Similarity=0.424 Sum_probs=30.6
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321 40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78 (102)
Q Consensus 40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~ 78 (102)
...+..++|+|||||||||+++.|+..+......+..+.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~ 67 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDS 67 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHH
Confidence 456788999999999999999999998764444444443
No 208
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.48 E-value=1.2e-07 Score=60.69 Aligned_cols=29 Identities=24% Similarity=0.177 Sum_probs=26.2
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
.+.++..++|.|||||||||+++.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35678899999999999999999999976
No 209
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.48 E-value=2.8e-08 Score=63.26 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=29.0
Q ss_pred HHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 35 YEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 35 ~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
..++.+.++..++|+|+||+|||||++++++..
T Consensus 18 l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 18 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp GGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred HhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344888999999999999999999999999876
No 210
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.47 E-value=4.7e-07 Score=61.53 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=30.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhh---CccEEEEccchh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQT---SATFLRVVGSEL 79 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~---~~~~~~i~~~~~ 79 (102)
.+..++|+||+|+||||++++++..+ ......++..+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 45689999999999999999999987 455666665544
No 211
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.46 E-value=4.4e-08 Score=67.01 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=22.3
Q ss_pred ceeEEECCCCCChhHHHHHHHhhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
+.++|+|+||||||||++.|.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 578999999999999999999986
No 212
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.44 E-value=1.3e-07 Score=60.50 Aligned_cols=27 Identities=37% Similarity=0.501 Sum_probs=25.7
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHh
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVAN 65 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~ 65 (102)
++++|+.++|+||||+|||||++.+++
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999999999998
No 213
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.44 E-value=8.6e-08 Score=62.57 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=25.8
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
...+|..++|.||+||||||++++|++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 4577899999999999999999999998
No 214
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.43 E-value=3.1e-07 Score=69.03 Aligned_cols=50 Identities=28% Similarity=0.393 Sum_probs=40.9
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
...++++.|.++.++.+.+.+.. .....++|+||||+|||+++++++..+
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred hCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34688999999999888776542 234568999999999999999999986
No 215
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.43 E-value=6.6e-08 Score=65.60 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=26.3
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
..+..++|.||+|||||||++.|++++.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56789999999999999999999998865
No 216
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.42 E-value=1.9e-07 Score=59.77 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=26.1
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 40 IKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
..++..++|+|||||||||+++.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46789999999999999999999998764
No 217
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.42 E-value=2.3e-07 Score=57.16 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=24.5
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
.++|.||+||||||+++.|+..++...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i 30 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPII 30 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeee
Confidence 6889999999999999999988776544
No 218
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.42 E-value=2.7e-07 Score=58.79 Aligned_cols=29 Identities=28% Similarity=0.622 Sum_probs=25.3
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSATF 71 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~ 71 (102)
...++|.|+|||||||+++.|++.++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~ 46 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPF 46 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEE
Confidence 46899999999999999999999876543
No 219
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.41 E-value=6.7e-07 Score=68.10 Aligned_cols=62 Identities=19% Similarity=0.287 Sum_probs=44.6
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh----------CccEEEE
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT----------SATFLRV 74 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~----------~~~~~~i 74 (102)
...++++.|.++.+..+.+.+.. .....++|+||||+|||+++++++..+ ......+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 34678899999888777765522 234568999999999999999999976 4455666
Q ss_pred ccchh
Q psy16321 75 VGSEL 79 (102)
Q Consensus 75 ~~~~~ 79 (102)
+...+
T Consensus 233 ~~~~l 237 (854)
T 1qvr_A 233 QMGSL 237 (854)
T ss_dssp CC---
T ss_pred ehHHh
Confidence 65544
No 220
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.41 E-value=9.2e-08 Score=74.21 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.8
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
|+.++|+||||+||||++|++ |+..
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHH
Confidence 789999999999999999999 7653
No 221
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.39 E-value=3.3e-07 Score=57.56 Aligned_cols=33 Identities=36% Similarity=0.550 Sum_probs=27.3
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~ 73 (102)
..+..+.|.|++||||||+++.|+..++...+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 456789999999999999999999877654433
No 222
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.39 E-value=4.4e-08 Score=72.82 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=24.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHH
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVA 64 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~ 64 (102)
++++++|+.++|+||||||||||+++|.
T Consensus 342 sl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 342 SVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred eeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 4567899999999999999999998654
No 223
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.39 E-value=3.4e-07 Score=57.37 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=26.7
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLR 73 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~ 73 (102)
+..++|+||+||||||+++.|+..++...+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~ 35 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYD 35 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 5689999999999999999999988766544
No 224
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.39 E-value=5.7e-07 Score=60.41 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=40.5
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
+..|+++.|.+..++.+++.+.. .....++|+||+|+||||+++.++..+
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKD-------------GNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHS-------------CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHc-------------CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 56789999999999988887642 111238999999999999999999875
No 225
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.39 E-value=1e-06 Score=66.09 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=40.1
Q ss_pred ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
..|+++.|.++.+..+.+.+.. ..+..++|+||+|+|||+++++++..+
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 4678899998888887776532 245688999999999999999999876
No 226
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.37 E-value=2.5e-07 Score=63.66 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=23.3
Q ss_pred ceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
-+++|.|||||||||++++|++++.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999999986
No 227
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.37 E-value=5.1e-07 Score=56.41 Aligned_cols=33 Identities=30% Similarity=0.583 Sum_probs=27.3
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
...+..++|.|++||||||+++.|+..++...+
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~ 40 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSGLKYI 40 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEE
Confidence 345678999999999999999999987765443
No 228
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.36 E-value=1.6e-07 Score=62.82 Aligned_cols=30 Identities=30% Similarity=0.383 Sum_probs=27.0
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
++++|+.++|+||||||||||++.+++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999999998653
No 229
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.36 E-value=3.7e-07 Score=56.88 Aligned_cols=29 Identities=34% Similarity=0.604 Sum_probs=25.0
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSATFLR 73 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~ 73 (102)
.++|.|||||||||+++.|+..+....+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 68999999999999999999988765443
No 230
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.36 E-value=3.3e-07 Score=58.43 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=21.8
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
.++|+|||||||||+++.|++ +...
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~ 28 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVP 28 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCC
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCc
Confidence 689999999999999999998 4443
No 231
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.36 E-value=2.5e-07 Score=65.43 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=28.4
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~ 71 (102)
+.+.+++.++|+|||||||||++++|++++.+..
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 4456688999999999999999999999887653
No 232
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.36 E-value=9.8e-07 Score=56.00 Aligned_cols=25 Identities=48% Similarity=0.672 Sum_probs=22.9
Q ss_pred ceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
..++|+||+|+|||+|+++++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999998763
No 233
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.35 E-value=3.5e-07 Score=60.64 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=25.5
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSATFLRV 74 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i 74 (102)
.++|+|||||||||+++.|+..++...+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~ 32 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVAL 32 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEec
Confidence 678999999999999999999877655443
No 234
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.35 E-value=3.2e-07 Score=57.45 Aligned_cols=29 Identities=34% Similarity=0.555 Sum_probs=24.9
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
.+..++|.|++||||||+++.|+..+...
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~ 31 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFK 31 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 46689999999999999999999876543
No 235
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.35 E-value=1.4e-07 Score=64.87 Aligned_cols=33 Identities=27% Similarity=0.215 Sum_probs=28.7
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
+...+++.++++||||+||||++..|++.+.+.
T Consensus 100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp CCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 445678999999999999999999999987654
No 236
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.35 E-value=3.4e-07 Score=58.28 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.5
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSATF 71 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~ 71 (102)
.++|+|+|||||||+++.|++ +....
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~ 28 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYV 28 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEE
Confidence 689999999999999999999 55443
No 237
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.31 E-value=2.2e-07 Score=71.47 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=26.0
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
+++.+++.++|+||||+||||++|++++.
T Consensus 668 l~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 668 LSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp ECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 55678999999999999999999999864
No 238
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.31 E-value=3.3e-07 Score=69.58 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=24.7
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
.+++.++|+||||+||||++|+|+++.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 568899999999999999999999963
No 239
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.30 E-value=6.7e-07 Score=58.40 Aligned_cols=40 Identities=18% Similarity=0.386 Sum_probs=31.5
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhh
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI 80 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~ 80 (102)
.+..+++++|+|||||||+|.++.|+..++.. .++..++.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdll 64 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLL 64 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHH
Confidence 45678899999999999999999999987654 34444444
No 240
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.30 E-value=5.6e-07 Score=57.81 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=28.1
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
.+.+.++..++|.|++||||||+++.|++.+.
T Consensus 19 ~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 19 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34467789999999999999999999999876
No 241
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.29 E-value=6.6e-07 Score=56.23 Aligned_cols=31 Identities=35% Similarity=0.413 Sum_probs=26.9
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
...++..+.|.|++||||||+++.|+..+..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3457889999999999999999999998754
No 242
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.28 E-value=6.2e-07 Score=56.09 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=23.3
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
+..++|.||+||||||+++.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999998765
No 243
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.27 E-value=1.3e-07 Score=61.48 Aligned_cols=28 Identities=39% Similarity=0.615 Sum_probs=24.1
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
++.+|+.++|.||||+|||||+..++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999997766543
No 244
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.27 E-value=8.3e-07 Score=55.83 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=26.4
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
++..++|.|++||||||+++.|+..++...+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 38 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHL 38 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 5678999999999999999999987765443
No 245
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.27 E-value=3.5e-07 Score=63.77 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=30.7
Q ss_pred ChHHHHhcC---CCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 31 HPEYYEEMG---IKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 31 ~~~~~~~~~---i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
.+++..-+. +++|+.+.|+||||+|||||+..++....+
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 344444443 778999999999999999999999987643
No 246
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.27 E-value=6.6e-07 Score=60.71 Aligned_cols=29 Identities=28% Similarity=0.208 Sum_probs=26.3
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
+++.++++|++|+||||++..|++.+.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 78899999999999999999999987654
No 247
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.26 E-value=3.7e-07 Score=63.63 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=25.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
++.+.++ +.+|+||||+||||++++|.++.
T Consensus 21 ~~~~~~g-~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 21 TLNFPEG-VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence 4556677 89999999999999999999853
No 248
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.26 E-value=9.6e-07 Score=55.32 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=24.8
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSATF 71 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~ 71 (102)
+..++|.|++||||||+++.|+..++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~ 31 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTH 31 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 46799999999999999999998776543
No 249
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.25 E-value=9.4e-07 Score=54.22 Aligned_cols=27 Identities=30% Similarity=0.596 Sum_probs=22.2
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
.++|.||+||||||+++.| ..++...+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i 29 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVI 29 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEE
Confidence 6889999999999999999 55555443
No 250
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.24 E-value=1.1e-06 Score=55.00 Aligned_cols=30 Identities=27% Similarity=0.538 Sum_probs=25.4
Q ss_pred ceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQTSATFLR 73 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~ 73 (102)
..++|.|++||||||+++.|+..++...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 468999999999999999999987765443
No 251
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.24 E-value=3.7e-06 Score=63.07 Aligned_cols=62 Identities=26% Similarity=0.395 Sum_probs=43.2
Q ss_pred ccCChHHHHHHHHHHhhhhcCChHHHHhcCC----CCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321 10 KRGSLDVQIQEIKESVELPLTHPEYYEEMGI----KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 79 (102)
Q Consensus 10 ~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i----~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~ 79 (102)
++.|.++.++.+.+.+.... .++ .+...++|+||+|+|||+++++++..+....+.++..+.
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~--------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~ 524 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMAR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY 524 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHH--------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred hccCHHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhh
Confidence 45666777766666554321 122 123368999999999999999999998777777765544
No 252
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.24 E-value=7.9e-07 Score=55.13 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.5
Q ss_pred ceeEEECCCCCChhHHHHHHHh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVAN 65 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~ 65 (102)
..++|.|||||||||+++.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999997
No 253
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.23 E-value=8.9e-07 Score=55.86 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.3
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
.++|+||||+|||||++.+++...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999997643
No 254
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.23 E-value=1.3e-06 Score=54.03 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=26.2
Q ss_pred ceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQTSATFLR 73 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~ 73 (102)
++++|.|++||||||+++.|+..+..+.+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 589999999999999999999987766544
No 255
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.23 E-value=4.8e-07 Score=63.02 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=24.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
++.+.++ ..+|+|||||||||++.+|+..
T Consensus 18 ~i~~~~g-~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 18 DIEFQSG-ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 3556666 7889999999999999999854
No 256
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.23 E-value=4.1e-06 Score=62.96 Aligned_cols=68 Identities=25% Similarity=0.377 Sum_probs=46.1
Q ss_pred cccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh---CccEEEEccchhh
Q psy16321 9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT---SATFLRVVGSELI 80 (102)
Q Consensus 9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~---~~~~~~i~~~~~~ 80 (102)
+++.|.+..++.+.+.+........ + .-.+...++|+||+|+|||+++++|+..+ ..+.+.++..++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~---~-~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK---D-PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS---C-TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC---C-CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 4678888888888877754321100 0 00122269999999999999999999986 3456777766554
No 257
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.22 E-value=1.6e-06 Score=55.15 Aligned_cols=32 Identities=31% Similarity=0.493 Sum_probs=26.4
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~ 73 (102)
.+..++|.|++||||||+++.|+..+....+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~ 50 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 35579999999999999999999877655443
No 258
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.22 E-value=1.4e-06 Score=56.11 Aligned_cols=31 Identities=32% Similarity=0.534 Sum_probs=26.2
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
++..++|.|++||||||+++.|+..+....+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i 33 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHL 33 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEE
Confidence 4568999999999999999999998775443
No 259
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.22 E-value=6.6e-07 Score=61.51 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=24.9
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
..+..+.|+||||+|||++++.++..+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999977
No 260
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.21 E-value=1.1e-06 Score=57.46 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=26.4
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
..+..++|.||+||||||+++.|+..+..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 47889999999999999999999998874
No 261
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.21 E-value=4.4e-07 Score=65.78 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=28.7
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
++.+|+.++|.||||||||||++.+++...+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 6889999999999999999999999998755
No 262
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.21 E-value=2.6e-06 Score=55.44 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=25.8
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
+++....++++||||+||||++.+|+..+.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 355566799999999999999999999875
No 263
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.21 E-value=1.6e-06 Score=56.59 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=26.6
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
+..++..++|.|++||||||+++.|++.+...
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~ 43 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGFT 43 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHHCCE
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 34678899999999999999999999876644
No 264
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.21 E-value=1.7e-06 Score=54.14 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=25.3
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
+..++|.|++||||||+++.|+..++...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i 35 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHL 35 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 467999999999999999999987765443
No 265
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.20 E-value=1.1e-06 Score=54.85 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=21.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
.+..++|.|++||||||+++.|+..+....+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 3567999999999999999999987765543
No 266
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.20 E-value=1.3e-06 Score=55.08 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=26.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
.+..++|.|++||||||+++.|+..++...+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 3568999999999999999999998775443
No 267
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.20 E-value=7.8e-07 Score=67.30 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=25.3
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
+.+. ++.++|+||||+||||++|+|+++.
T Consensus 572 isl~-g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 572 LEMA-HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEES-SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ccCC-CcEEEEECCCCCChHHHHHHHHhhh
Confidence 3344 8999999999999999999999975
No 268
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.20 E-value=1.2e-06 Score=55.69 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=24.1
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
+..++|.|++||||||+++.|+..++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999999987665
No 269
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.20 E-value=6.5e-07 Score=68.99 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=23.8
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHH
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVA 64 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~ 64 (102)
+++.+++.++|+||||+||||++|+++
T Consensus 657 l~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 657 FEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred eecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 445678999999999999999999993
No 270
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.20 E-value=7e-07 Score=61.00 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=25.3
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
++.+.++ ..+|+||||||||||+.+|..++
T Consensus 19 ~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 19 LIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred EEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 3455666 99999999999999999999665
No 271
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.20 E-value=2.4e-06 Score=58.05 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=41.0
Q ss_pred ccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC---ccEEEEccc
Q psy16321 10 KRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS---ATFLRVVGS 77 (102)
Q Consensus 10 ~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~---~~~~~i~~~ 77 (102)
++.|.+..+..+.+.+.... .....++|+||+|+|||+++++|+.... .++..+++.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~ 62 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCA 62 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECS
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCC
Confidence 56777777777777665421 3456899999999999999999998653 234555543
No 272
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.20 E-value=1.3e-06 Score=61.60 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=24.8
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHh
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVAN 65 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~ 65 (102)
.+..+..++|+|+||+|||||+++|++
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 356788999999999999999999999
No 273
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.19 E-value=1.6e-06 Score=53.59 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=24.7
Q ss_pred ceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
..++|.|++||||||+++.|+..+....+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFV 31 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 46899999999999999999987765543
No 274
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.18 E-value=1.4e-06 Score=54.94 Aligned_cols=26 Identities=15% Similarity=0.488 Sum_probs=23.1
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
.++|.|++||||||+++.|+..+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 27 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYE 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCc
Confidence 57899999999999999999977654
No 275
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.18 E-value=1.6e-06 Score=55.52 Aligned_cols=28 Identities=25% Similarity=0.521 Sum_probs=23.7
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
.++|.||+||||||+++.|+..++...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEe
Confidence 4789999999999999999887765544
No 276
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.18 E-value=5e-07 Score=64.10 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=27.2
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
++++..+..++|+|+||+|||||+++|++.
T Consensus 151 ~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 151 RLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 456778889999999999999999999997
No 277
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.18 E-value=1.8e-06 Score=56.91 Aligned_cols=29 Identities=31% Similarity=0.532 Sum_probs=24.8
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSATF 71 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~ 71 (102)
+..++|.||+||||||+++.|+..+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~ 37 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARY 37 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 45799999999999999999998776543
No 278
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.17 E-value=1.7e-06 Score=55.47 Aligned_cols=28 Identities=21% Similarity=0.491 Sum_probs=23.6
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
.++|.||+||||||+++.|+..++...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4789999999999999999987765543
No 279
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.16 E-value=1.7e-06 Score=56.06 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=25.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
.+..++|.|++||||||+++.|+..+....+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i 36 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHL 36 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEE
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 4568999999999999999999987765443
No 280
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.16 E-value=1.2e-06 Score=59.50 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=26.2
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
.++++++++||||+||||++..|++.+.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999998765
No 281
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.16 E-value=2.7e-06 Score=53.79 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=23.8
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
.+..++|.|++||||||+++.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999876
No 282
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.15 E-value=2.7e-06 Score=53.96 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=25.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
....++|.|++||||||+++.|+..++...+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i 44 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHL 44 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEE
Confidence 4567999999999999999999987765433
No 283
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.15 E-value=2.3e-06 Score=56.27 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=26.4
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
.++..++|.||+||||||+++.|+..++...+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i 58 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL 58 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 35678999999999999999999987765433
No 284
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.15 E-value=1.9e-06 Score=61.25 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=29.0
Q ss_pred CceeEEECCCCCChhHHHHHHHhhh-----CccEEEEccchh
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQT-----SATFLRVVGSEL 79 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~-----~~~~~~i~~~~~ 79 (102)
...++|+||+|+|||||+++|++.+ ......+...++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 4689999999999999999999977 444555655443
No 285
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.14 E-value=4.7e-06 Score=58.10 Aligned_cols=32 Identities=31% Similarity=0.589 Sum_probs=26.4
Q ss_pred CCCCce--eEEECCCCCChhHHHHHHHhhhCccE
Q psy16321 40 IKPPKG--VILYGPPGTGKTLLAKAVANQTSATF 71 (102)
Q Consensus 40 i~~~~~--~~l~Gp~GsGKStl~~~i~~~~~~~~ 71 (102)
+.+++. ++|+||+||||||++++|++.+...+
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 445555 99999999999999999999876543
No 286
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.14 E-value=2.2e-06 Score=55.41 Aligned_cols=34 Identities=26% Similarity=0.557 Sum_probs=26.6
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCccEEEEccchhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI 80 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~ 80 (102)
.++|+|||||||+|.++.|+..++... ++..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 478899999999999999999887643 4444443
No 287
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.14 E-value=2.6e-06 Score=54.71 Aligned_cols=28 Identities=32% Similarity=0.343 Sum_probs=23.6
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSATF 71 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~ 71 (102)
+..++|.|++||||||+++.|+. +....
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~ 31 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINV 31 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEE
Confidence 46799999999999999999998 55433
No 288
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.13 E-value=1.6e-06 Score=53.27 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=21.2
Q ss_pred CceeEEECCCCCChhHHHHHHHhhh
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
....+|+||||+||||++.+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3478899999999999999998543
No 289
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.13 E-value=2.7e-06 Score=52.32 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=24.1
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
.++|.|++||||||+++.|+..+....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i 29 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFY 29 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 5789999999999999999997765544
No 290
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.13 E-value=1.9e-06 Score=60.90 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=23.5
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHH
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVA 64 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~ 64 (102)
++.+|+.+.|+||||||||||++.++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 57899999999999999999999654
No 291
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.13 E-value=2.5e-06 Score=54.06 Aligned_cols=28 Identities=32% Similarity=0.526 Sum_probs=24.6
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
.++|.|++||||||+++.|+..++...+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~ 31 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYL 31 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcee
Confidence 7899999999999999999998775543
No 292
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.12 E-value=1.8e-06 Score=55.75 Aligned_cols=29 Identities=21% Similarity=0.411 Sum_probs=25.0
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
.+..++|.||+||||||+++.|+..++..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~ 32 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLA 32 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 35679999999999999999999887653
No 293
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.12 E-value=6.2e-06 Score=56.14 Aligned_cols=27 Identities=44% Similarity=0.684 Sum_probs=23.9
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
.+..++|+||+|+|||+|+++|+..+.
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999998654
No 294
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.12 E-value=2.6e-06 Score=53.80 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHhh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
....++|.|++||||||+++.|+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3567999999999999999999987
No 295
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.12 E-value=1.6e-06 Score=54.82 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.1
Q ss_pred eeEEECCCCCChhHHHHHHHhhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
.++|+||||+|||||++.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999999974
No 296
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.11 E-value=1.5e-06 Score=54.34 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.9
Q ss_pred eeEEECCCCCChhHHHHHHHhhhC
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
.++|.|++||||||+++.|+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999998765
No 297
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.11 E-value=6.1e-06 Score=62.87 Aligned_cols=66 Identities=24% Similarity=0.390 Sum_probs=45.5
Q ss_pred ccccCChHHHHHHHHHHhhhhcCChHHHHhcC--CCCCceeEEECCCCCChhHHHHHHHhhh---CccEEEEccchh
Q psy16321 8 LKKRGSLDVQIQEIKESVELPLTHPEYYEEMG--IKPPKGVILYGPPGTGKTLLAKAVANQT---SATFLRVVGSEL 79 (102)
Q Consensus 8 ~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~--i~~~~~~~l~Gp~GsGKStl~~~i~~~~---~~~~~~i~~~~~ 79 (102)
++++.|.+..++.+...+..... .+. -.+...++|+||+|+|||+++++|+..+ ..+++.++...+
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~------g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~ 627 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARA------GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 627 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGG------GCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred hcccCCcHHHHHHHHHHHHHHhc------ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhc
Confidence 35678888888888777654211 011 0122478999999999999999999987 445666765543
No 298
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.10 E-value=2.6e-06 Score=60.65 Aligned_cols=30 Identities=30% Similarity=0.236 Sum_probs=26.5
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
.++++++++||+|+||||++..|++.+.+.
T Consensus 96 ~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 96 KDRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 367899999999999999999999987654
No 299
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.09 E-value=2e-06 Score=54.77 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=24.3
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
..+..++|.|++||||||+++.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999998653
No 300
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.09 E-value=2.3e-06 Score=54.52 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=24.5
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
..+..++|.|++||||||+++.|+..++
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999998653
No 301
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.08 E-value=4.4e-06 Score=54.41 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=26.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~ 73 (102)
.+..++|.|++||||||+++.|+..+....+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 45679999999999999999999987755433
No 302
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.08 E-value=7.8e-07 Score=56.75 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.4
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
.++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999988754
No 303
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.07 E-value=2.6e-06 Score=54.41 Aligned_cols=25 Identities=32% Similarity=0.626 Sum_probs=21.2
Q ss_pred ceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
+.+.|+||||+|||||++.|....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4588999999999999999886543
No 304
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.07 E-value=1.5e-06 Score=60.19 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=24.4
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
.+..++|+|+||+|||||++.|++.+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 4678999999999999999999997543
No 305
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.06 E-value=5.3e-06 Score=55.01 Aligned_cols=25 Identities=36% Similarity=0.503 Sum_probs=22.4
Q ss_pred CCceeEEECCCCCChhHHHHHHHhh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.+..++|.|+|||||||+++.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999986
No 306
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.05 E-value=3.5e-06 Score=54.29 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=25.8
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLR 73 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~ 73 (102)
+..++|.|++||||||+++.|+..+....+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 35 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLS 35 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEe
Confidence 4578999999999999999999987655443
No 307
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.04 E-value=5e-06 Score=52.24 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=21.3
Q ss_pred eeEEECCCCCChhHHHHHHHhhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
.++|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999877
No 308
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.04 E-value=5.2e-06 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=21.2
Q ss_pred eeEEECCCCCChhHHHHHHHhhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
.++|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999876
No 309
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.03 E-value=1.5e-06 Score=59.02 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=19.4
Q ss_pred eeEEECCCCCChhHHHHHHHhh-hCccEE
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ-TSATFL 72 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~-~~~~~~ 72 (102)
.++|+||||+|||||++.|++. ..+..+
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~g 48 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPERV 48 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC--------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence 3599999999999999999986 544433
No 310
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.03 E-value=3.5e-06 Score=61.03 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=25.1
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
..+..++|+||||+|||+++++|+.....
T Consensus 39 ~~~~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 39 LSGESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp HHTCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred hcCCeeEeecCchHHHHHHHHHHHHHHhh
Confidence 34679999999999999999999997743
No 311
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.02 E-value=4.3e-06 Score=53.66 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=24.1
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSATFLR 73 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~ 73 (102)
.++|.|++||||||+++.|+..++...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~ 30 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS 30 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 47899999999999999999877654443
No 312
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.01 E-value=5.5e-06 Score=53.67 Aligned_cols=26 Identities=27% Similarity=0.615 Sum_probs=22.7
Q ss_pred eeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
.++|.||+||||||+++.|+..+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~ 27 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLA 27 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 47899999999999999999877643
No 313
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.00 E-value=5.2e-07 Score=68.83 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=27.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHH-HHhhh
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKA-VANQT 67 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~-i~~~~ 67 (102)
++.++.|+.++|+|+||||||||++. |++.+
T Consensus 517 sl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 517 DVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp EEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred eEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 45688999999999999999999996 77654
No 314
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.00 E-value=6.1e-06 Score=52.78 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=25.7
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLR 73 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~ 73 (102)
...++|+|++||||||+++.++..+....+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 4578999999999999999999876655443
No 315
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.00 E-value=6.4e-06 Score=57.42 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.6
Q ss_pred eeEEECCCCCChhHHHHHHHhhhC
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
.++|+|+||+|||||++++++...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 489999999999999999998643
No 316
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.98 E-value=3.4e-06 Score=57.29 Aligned_cols=27 Identities=37% Similarity=0.409 Sum_probs=24.5
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
++.++++|++|+||||++..|++.+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 788999999999999999999988754
No 317
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.98 E-value=6.5e-06 Score=56.71 Aligned_cols=31 Identities=35% Similarity=0.566 Sum_probs=26.6
Q ss_pred ceeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQTSATFLRV 74 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i 74 (102)
..++|+||+||||||+++.|+..++...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~ 36 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISV 36 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEec
Confidence 4789999999999999999999887655554
No 318
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.97 E-value=3.2e-06 Score=60.03 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=21.3
Q ss_pred eEEECCCCCChhHHHHHHHhhhC
Q psy16321 46 VILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 46 ~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
++|+||||+|||||+++|+|...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 69999999999999999999765
No 319
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.97 E-value=2.5e-06 Score=58.82 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=27.2
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
+....+..++++|+||+||||+++.|++.+.
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4467788999999999999999999998764
No 320
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.97 E-value=5.3e-06 Score=52.34 Aligned_cols=26 Identities=27% Similarity=0.175 Sum_probs=22.7
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
-..++|.||+|||||||++.|.+.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 35789999999999999999998753
No 321
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.96 E-value=4.1e-06 Score=51.94 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
++..++|+|++|+|||||++.+++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46679999999999999999999853
No 322
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.96 E-value=6.3e-06 Score=54.27 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=24.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
....++|.|++||||||+++.|+..+...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 34579999999999999999999876643
No 323
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.94 E-value=6.5e-06 Score=52.87 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=21.2
Q ss_pred CceeEEECCCCCChhHHHHHHHhhh
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
....+|+||||+||||++.+|.-.+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999997543
No 324
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.93 E-value=5.8e-06 Score=56.86 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.0
Q ss_pred CceeEEECCCCCChhHHHHHHHh
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVAN 65 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~ 65 (102)
+...+|+||||+||||++.+|..
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999854
No 325
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.91 E-value=6e-06 Score=50.65 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.8
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
..++|+|++|+|||||++.+++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999984
No 326
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.91 E-value=1.7e-06 Score=66.97 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=24.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHH
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVA 64 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~ 64 (102)
++.++.|+.++|+|+||||||||+++|.
T Consensus 662 sl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 662 DVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred eEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4567899999999999999999999853
No 327
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.89 E-value=3.8e-05 Score=51.91 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=39.2
Q ss_pred cccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321 7 ALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77 (102)
Q Consensus 7 ~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~ 77 (102)
.-+.+.|-+..++.|.+ +.. ..++|+||+|+|||||++.++.........++..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 44567777777776665 421 4899999999999999999998765554455443
No 328
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.88 E-value=1.1e-05 Score=55.92 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=26.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~ 73 (102)
.+..++|+||+|||||||+..||..++...+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs 70 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVIN 70 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEc
Confidence 34689999999999999999999987754443
No 329
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.88 E-value=1.4e-05 Score=51.17 Aligned_cols=30 Identities=33% Similarity=0.561 Sum_probs=25.1
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
+..++|.|++||||||+++.|+..++...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~ 32 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYV 32 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCcee
Confidence 357899999999999999999997765443
No 330
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.88 E-value=8.8e-06 Score=57.50 Aligned_cols=28 Identities=25% Similarity=0.390 Sum_probs=24.0
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
.+..++|+|+|||||||+++.|+..+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~ 284 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGY 284 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 4678899999999999999999876643
No 331
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.86 E-value=6.4e-06 Score=57.14 Aligned_cols=29 Identities=28% Similarity=0.527 Sum_probs=25.4
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
++++|+.+.|+||||+|||||+..++...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998888654
No 332
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.86 E-value=1.3e-05 Score=53.82 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=22.6
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
...++|.|++||||||+++.|+. +...
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~-lg~~ 101 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN-LGAY 101 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH-HTCE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCc
Confidence 45799999999999999999994 4443
No 333
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.86 E-value=6.3e-06 Score=58.80 Aligned_cols=28 Identities=32% Similarity=0.326 Sum_probs=24.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
++..++++||+|+||||++..|+..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999987644
No 334
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.86 E-value=6.8e-06 Score=55.58 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=20.0
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
+..++|.||+||||||+++.|+..++
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45799999999999999999998654
No 335
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.86 E-value=1.7e-06 Score=66.84 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=24.9
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHH
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLAKAVA 64 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~ 64 (102)
++.++.|+.++|+|+||||||||++.|.
T Consensus 644 sl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 644 SVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred eEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4567899999999999999999999853
No 336
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.86 E-value=3.5e-06 Score=62.11 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=23.8
Q ss_pred ceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQTSAT 70 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~ 70 (102)
..++|+||||+|||+|+++++...+..
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r~ 354 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPRA 354 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSCE
T ss_pred cceEEECCCchHHHHHHHHHHHhCCCc
Confidence 379999999999999999999987543
No 337
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.85 E-value=7.2e-06 Score=51.15 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.3
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++|+|++|+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999984
No 338
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.85 E-value=1.6e-05 Score=54.82 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=29.7
Q ss_pred CChHHHHhc--CCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321 30 THPEYYEEM--GIKPPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 30 ~~~~~~~~~--~i~~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
..+.+..-+ ++++|+.+.|+||||+|||||+..++..
T Consensus 107 G~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 107 GSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 334444444 5889999999999999999999999885
No 339
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.85 E-value=9.5e-06 Score=54.40 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.9
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
..++|.|+|||||||+++.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999974
No 340
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.84 E-value=1.3e-05 Score=55.56 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=24.4
Q ss_pred ceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQTSATF 71 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~~ 71 (102)
..++|.||+||||||+++.|+..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~i 35 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEI 35 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEE
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCce
Confidence 4789999999999999999999877443
No 341
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.83 E-value=1e-05 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.9
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++|+|++|+|||||++.+++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999984
No 342
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.83 E-value=1.4e-05 Score=53.78 Aligned_cols=27 Identities=37% Similarity=0.596 Sum_probs=23.4
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
++..+++|+||||+|||+++++|+...
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 335579999999999999999999864
No 343
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.81 E-value=2.3e-05 Score=55.46 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=28.4
Q ss_pred HhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
..+.+.+|+.++|+||+|+|||||++.|++..
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34567889999999999999999999999865
No 344
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.80 E-value=1.5e-05 Score=50.15 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=22.1
Q ss_pred ceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
..++|.|++||||||++..|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4789999999999999999998753
No 345
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.80 E-value=9.8e-06 Score=54.94 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.9
Q ss_pred CceeEEECCCCCChhHHHHHHHhh
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
...++|+|+||+|||||+++|.+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999985
No 346
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.78 E-value=2.2e-05 Score=54.01 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=24.8
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
+..++|.||+|||||||+..|+..++...+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~ii 32 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVI 32 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEE
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCcccee
Confidence 357889999999999999999987764433
No 347
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.77 E-value=2.4e-05 Score=53.73 Aligned_cols=32 Identities=34% Similarity=0.606 Sum_probs=26.3
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRV 74 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i 74 (102)
+..++|+||+|||||||+..|+..++...++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~ 41 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISV 41 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEec
Confidence 46789999999999999999998876544443
No 348
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.77 E-value=4.5e-05 Score=47.50 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=22.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
..-.++++|++|+|||||++.+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999999854
No 349
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.76 E-value=6.9e-06 Score=61.22 Aligned_cols=32 Identities=38% Similarity=0.427 Sum_probs=26.7
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
+.+..++.++|+|++|+|||||++.|++...+
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~ 35 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGA 35 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCC
Confidence 45677889999999999999999999976653
No 350
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.76 E-value=9.1e-06 Score=62.59 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHH
Q psy16321 37 EMGIKPPKGVILYGPPGTGKTLLA 60 (102)
Q Consensus 37 ~~~i~~~~~~~l~Gp~GsGKStl~ 60 (102)
++.++.|+.++|+||||||||||+
T Consensus 604 sl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 604 DVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp EEEEESSSEEEEECSTTSSHHHHH
T ss_pred ceEEcCCcEEEEEccCCCChhhhH
Confidence 356788999999999999999997
No 351
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.75 E-value=4.7e-05 Score=52.67 Aligned_cols=53 Identities=23% Similarity=0.213 Sum_probs=38.1
Q ss_pred cccCChHHHHHHHHHHh-hhhcCChHHHHhcCCCCCceeEE--ECCCCCChhHHHHHHHhhhC
Q psy16321 9 KKRGSLDVQIQEIKESV-ELPLTHPEYYEEMGIKPPKGVIL--YGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 9 ~~i~g~~~~~~~i~~~~-~~~~~~~~~~~~~~i~~~~~~~l--~Gp~GsGKStl~~~i~~~~~ 68 (102)
+.+.|-++.++.|.+.+ ...... .. ..+..++| +||+|+|||||++.++....
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~------~~-~~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSG------AG-LSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTS------SC-BCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcC------CC-CCCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 56888888888888776 422111 00 23567888 99999999999999998653
No 352
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.75 E-value=3.3e-05 Score=54.56 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=23.6
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321 40 IKPPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 40 i~~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
+..+..++|+|+||+|||||+++|.+.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 456778999999999999999999986
No 353
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.74 E-value=7.7e-05 Score=50.30 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=37.2
Q ss_pred cccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 7 ALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 7 ~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
.-+.+.|-+..++.|.+.+.. +..++|+||+|+|||||++.++...+
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ChHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC
Confidence 446678888888888776531 26899999999999999999987654
No 354
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.73 E-value=2.1e-05 Score=50.89 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.3
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
.+..++|.||+|+|||||+..|+....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 367899999999999999999987543
No 355
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.73 E-value=4.1e-05 Score=52.29 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=29.7
Q ss_pred CChHHHHhc--CCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 30 THPEYYEEM--GIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 30 ~~~~~~~~~--~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
..+.+..-+ ++++|+.+.|+||||+|||+|+..++...
T Consensus 92 G~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 92 GSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 334444434 57889999999999999999999998753
No 356
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.72 E-value=2.7e-05 Score=51.25 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=24.7
Q ss_pred ceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
-.++|.|||||||||+++.|+..+....+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~i 37 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQI 37 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCee
Confidence 36899999999999999999988775543
No 357
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.68 E-value=3e-05 Score=55.28 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=26.7
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
++.+|+.++|.|+||+|||||+..++...
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999999998865
No 358
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.68 E-value=2.5e-05 Score=50.83 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=21.5
Q ss_pred ceeEEECCCCCChhHHHHHHHhhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
-.++|+|++|+|||||+++|.+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 468999999999999999999854
No 359
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.67 E-value=2e-05 Score=52.34 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=21.5
Q ss_pred ceeEEECCCCCChhHHHHHHHhhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
..++|+|++|+|||||++++.+..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999863
No 360
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.67 E-value=2.4e-05 Score=49.64 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVAN 65 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~ 65 (102)
.+..++|.|+||+||||++..+..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999988876
No 361
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.66 E-value=1.3e-05 Score=55.31 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=24.0
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
++.++..++|.||||+|||+|+..++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3556778899999999999999999864
No 362
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.66 E-value=3.5e-05 Score=54.57 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=25.0
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
...++|.||+|+|||||+..|+..++...+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~ii 31 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVI 31 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEE
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEe
Confidence 357889999999999999999988765443
No 363
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.65 E-value=3.1e-05 Score=46.88 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=20.1
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999874
No 364
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.64 E-value=2.6e-05 Score=50.42 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=23.1
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHH
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVA 64 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~ 64 (102)
++++|+.+.|.|+||+|||+|+..++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999999987654
No 365
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.64 E-value=5.3e-05 Score=56.30 Aligned_cols=35 Identities=26% Similarity=0.268 Sum_probs=28.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhh---CccEEEEcc
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQT---SATFLRVVG 76 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~---~~~~~~i~~ 76 (102)
.+..+.|.|++||||||+++.|+..+ ....+.++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 56789999999999999999999987 555555543
No 366
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.64 E-value=3.6e-05 Score=46.31 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.1
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 367
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.63 E-value=4.1e-05 Score=49.64 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=24.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
.|..+.|.|++||||||+++.|+..+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 477899999999999999999988764
No 368
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.62 E-value=5.3e-05 Score=54.21 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.4
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
++..++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999997653
No 369
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.62 E-value=3.8e-05 Score=50.37 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=21.7
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
..|..+.|.||+||||||+++.|+..+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678899999999999999999998764
No 370
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.62 E-value=4e-05 Score=52.21 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=25.3
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
++.+|+.++|.|+||+|||||+..++..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 5899999999999999999999888753
No 371
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.62 E-value=3.7e-05 Score=46.33 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.8
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998864
No 372
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.62 E-value=3.5e-05 Score=52.40 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=28.3
Q ss_pred ChHHHHhc--CCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321 31 HPEYYEEM--GIKPPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 31 ~~~~~~~~--~i~~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.+.+..-+ ++++++.+.|+||||+|||+|+..++..
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33443334 4788999999999999999999988864
No 373
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.61 E-value=3.4e-05 Score=47.09 Aligned_cols=22 Identities=50% Similarity=0.750 Sum_probs=20.2
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999999874
No 374
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.60 E-value=5.3e-05 Score=46.39 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=21.8
Q ss_pred CCceeEEECCCCCChhHHHHHHHhh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
....++++|++|+|||||++.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557899999999999999999873
No 375
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.60 E-value=0.00015 Score=50.16 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=30.0
Q ss_pred CChHHHHhc-CCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 30 THPEYYEEM-GIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 30 ~~~~~~~~~-~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
..+.+..-+ ++.+|+.++|.|+||+|||||+..++...
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 444444433 58999999999999999999998888753
No 376
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.59 E-value=4.1e-05 Score=46.16 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.4
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 377
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.59 E-value=4.2e-05 Score=46.34 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.6
Q ss_pred eeEEECCCCCChhHHHHHHHhhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
.++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999998753
No 378
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.59 E-value=4e-05 Score=46.44 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.0
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999873
No 379
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.59 E-value=3.8e-05 Score=46.18 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.0
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999874
No 380
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.58 E-value=4.3e-05 Score=46.23 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.9
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
No 381
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.58 E-value=4.4e-05 Score=49.77 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=23.3
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
+..++|.|+.||||||+++.|+..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56789999999999999999998774
No 382
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.58 E-value=8.7e-06 Score=58.90 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=24.2
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
+.+.++ ..+|+|+||+|||||+.+|..++
T Consensus 56 l~f~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 56 LELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp EECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred EecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 445555 88999999999999999997764
No 383
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.58 E-value=4.4e-05 Score=46.70 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.0
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 384
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.58 E-value=3.5e-05 Score=54.65 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.9
Q ss_pred ceeEEECCCCCChhHHHHHHHhhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
-.++|+|+||+|||||++.|.+..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 478999999999999999999875
No 385
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.58 E-value=4.5e-05 Score=46.29 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=20.1
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999874
No 386
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.57 E-value=4.9e-05 Score=46.56 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.4
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998874
No 387
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.57 E-value=4.7e-05 Score=50.16 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=24.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
.+..+.|.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 477899999999999999999988764
No 388
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.57 E-value=3.8e-05 Score=53.35 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.0
Q ss_pred ceeEEECCCCCChhHHHHHHHh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVAN 65 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~ 65 (102)
...+|+||||+||||++.+|.=
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999984
No 389
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.56 E-value=4.1e-05 Score=46.49 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=19.1
Q ss_pred eeEEECCCCCChhHHHHHHHh
Q psy16321 45 GVILYGPPGTGKTLLAKAVAN 65 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~ 65 (102)
.++++|++|+|||||++.+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999975
No 390
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.56 E-value=6.1e-05 Score=52.40 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=25.1
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 40 IKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
+++++.+.|.||||+|||||+..++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7789999999999999999998888643
No 391
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.56 E-value=4.1e-05 Score=46.40 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.9
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5889999999999999999864
No 392
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.55 E-value=5e-05 Score=45.87 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.9
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999874
No 393
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.55 E-value=2.6e-05 Score=51.58 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=24.3
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
..+..++|.|+.||||||+++.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567899999999999999999998773
No 394
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.55 E-value=6.2e-05 Score=48.98 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=25.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
.|..+.+.|++||||||+++.|+..+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5788999999999999999999998875
No 395
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.54 E-value=5.3e-05 Score=48.16 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=21.8
Q ss_pred CceeEEECCCCCChhHHHHHHHhhh
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
.-.++++|++|+|||||++.+.+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999854
No 396
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.54 E-value=5.4e-05 Score=47.03 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.9
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999885
No 397
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.54 E-value=3e-05 Score=47.00 Aligned_cols=22 Identities=41% Similarity=0.729 Sum_probs=19.8
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5789999999999999999864
No 398
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.54 E-value=3.2e-05 Score=53.91 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=23.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
.+..++++||+|+||||+++.++...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999998865
No 399
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.54 E-value=5.5e-05 Score=45.75 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.5
Q ss_pred eeEEECCCCCChhHHHHHHHh
Q psy16321 45 GVILYGPPGTGKTLLAKAVAN 65 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~ 65 (102)
.++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999999986
No 400
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.53 E-value=5.5e-05 Score=46.74 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.5
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++|+|++|+|||||++.+.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999873
No 401
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.52 E-value=5.8e-05 Score=46.56 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.0
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999874
No 402
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.52 E-value=6.4e-05 Score=46.63 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.2
Q ss_pred eeEEECCCCCChhHHHHHHHhhhC
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
.++++|++|+|||||++.+.+...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 589999999999999999988543
No 403
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.52 E-value=4e-05 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.0
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 404
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.52 E-value=7.7e-05 Score=47.80 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=25.8
Q ss_pred ceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQTSATFL 72 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~~~ 72 (102)
.++.|.||.||||||+++.|+..+..+++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 47999999999999999999998877654
No 405
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.52 E-value=6e-05 Score=46.14 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.0
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5889999999999999999864
No 406
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.52 E-value=7.5e-05 Score=54.92 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=24.0
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
.+..+.|.|++||||||+++.|+..+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 456789999999999999999998765
No 407
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.51 E-value=6e-05 Score=46.99 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.5
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++|+|++|+|||||++.+.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 408
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.51 E-value=5.3e-05 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.9
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++|+|+||+|||||++.+.+.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999985
No 409
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.51 E-value=6.7e-05 Score=48.67 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.7
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
.|..+.|.|++||||||+++.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999998764
No 410
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.51 E-value=8.4e-05 Score=45.11 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.3
Q ss_pred CCceeEEECCCCCChhHHHHHHHhh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
+.-.++++|++|+|||||++.+.+-
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999763
No 411
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.51 E-value=5.3e-05 Score=46.36 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.6
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999875
No 412
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.51 E-value=7.3e-05 Score=48.59 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=20.8
Q ss_pred CCCceeEEECCCCCChhHHHHHHHh
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVAN 65 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~ 65 (102)
..++.+++.||+||||||++..+.-
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 4588999999999999998776653
No 413
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.51 E-value=6.9e-05 Score=47.11 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=21.4
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhh
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
...-.++++|++|+|||||++.+.+.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34457999999999999999999864
No 414
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.50 E-value=8.1e-05 Score=48.68 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=25.3
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
..+..+.|.|++||||||+++.|+..+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45788999999999999999999987654
No 415
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.50 E-value=8.4e-05 Score=51.32 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=22.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
..-.++++|+||+|||||++.+++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44579999999999999999999853
No 416
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.50 E-value=8.5e-05 Score=56.30 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=40.8
Q ss_pred cccccccCChHHHHHHHHHHhhhhcCChH-HHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 5 YKALKKRGSLDVQIQEIKESVELPLTHPE-YYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~-~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
..+|++++-.....+.+++.-.+|..... .+.. .+..++.+++.||+||||||++..+....
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~-~l~~~~~vii~gpTGSGKTtllp~ll~~~ 133 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRRELPVHAQRDEFLK-LYQNNQIMVFVGETGSGKTTQIPQFVLFD 133 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHH-HHHHCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCccccCCCHHHHHHHHHhhcCChHHHHHHHHH-HHhCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45688887666666666665555532221 1111 23457889999999999999888886543
No 417
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.49 E-value=6.8e-05 Score=45.30 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.6
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999764
No 418
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.49 E-value=7.2e-05 Score=46.43 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.2
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 419
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.48 E-value=6.9e-05 Score=46.06 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.6
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46899999999999999999874
No 420
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.48 E-value=0.00018 Score=48.96 Aligned_cols=33 Identities=6% Similarity=0.082 Sum_probs=26.2
Q ss_pred ceeEEECCCCCChhHHHHHHHhhh------CccEEEEcc
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQT------SATFLRVVG 76 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~~------~~~~~~i~~ 76 (102)
..++|+||+|+||||++++++..+ .++...++.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~ 57 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDP 57 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcC
Confidence 478999999999999999998753 445666654
No 421
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.48 E-value=7.2e-05 Score=45.67 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.7
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 422
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.48 E-value=8.6e-05 Score=46.19 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.8
Q ss_pred CCceeEEECCCCCChhHHHHHHHhh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
..-.++++|++|+|||||++.+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999875
No 423
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.47 E-value=7.5e-05 Score=45.82 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.1
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 424
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.47 E-value=5.5e-05 Score=46.88 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.2
Q ss_pred ceeEEECCCCCChhHHHHHHHhhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
-.++++|++|+|||||++.+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 468999999999999999998753
No 425
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.47 E-value=6.2e-05 Score=45.96 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.2
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 426
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.46 E-value=6.6e-05 Score=47.04 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.3
Q ss_pred ceeEEECCCCCChhHHHHHHHh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVAN 65 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~ 65 (102)
-.++++|++|+|||||++.+.+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999987
No 427
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.46 E-value=5.2e-05 Score=46.91 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.9
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999874
No 428
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.46 E-value=7e-05 Score=54.43 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=25.6
Q ss_pred CCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVANQTSA 69 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~ 69 (102)
..+..+.|.|.+||||||++++|+..+..
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 35668999999999999999999998874
No 429
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.46 E-value=8.4e-05 Score=45.54 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.5
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999874
No 430
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.45 E-value=4.5e-05 Score=47.41 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.3
Q ss_pred CceeEEECCCCCChhHHHHHHHhh
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.-.++++|++|+|||||++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 446899999999999999999875
No 431
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.44 E-value=8.6e-05 Score=51.26 Aligned_cols=22 Identities=14% Similarity=0.416 Sum_probs=20.9
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||+++|.|.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999994
No 432
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.44 E-value=8e-05 Score=48.96 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.3
Q ss_pred CceeEEECCCCCChhHHHHHHHhh
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.-.++|+|++|+|||||++.|.+.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 346899999999999999999884
No 433
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.44 E-value=8.5e-05 Score=46.20 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.2
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 434
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.44 E-value=8.6e-05 Score=46.18 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.2
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++|+|++|+|||||++.+.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 435
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.44 E-value=9e-05 Score=52.78 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.1
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
+..++++|++|+||||++..|++.+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998764
No 436
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.43 E-value=7.2e-05 Score=46.14 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.4
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 437
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.43 E-value=0.0002 Score=52.58 Aligned_cols=26 Identities=46% Similarity=0.636 Sum_probs=22.8
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
...++|.|||||||||+++.++..+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~ 229 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAE 229 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999988653
No 438
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.43 E-value=9e-05 Score=46.53 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.7
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 439
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.43 E-value=0.00011 Score=46.01 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=21.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHhh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
+.-.++++|++|+|||||++.+.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999999874
No 440
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.43 E-value=9e-05 Score=46.23 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.1
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999877653
No 441
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.43 E-value=8.9e-05 Score=46.45 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.4
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++|+|++|+|||||++.+.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 442
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.42 E-value=0.0001 Score=53.52 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=22.9
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
.+..++++|.|||||||+++.|+..+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999876
No 443
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.42 E-value=0.0001 Score=46.59 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=18.4
Q ss_pred CceeEEECCCCCChhHHHHHHH
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVA 64 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~ 64 (102)
+..++++||+|+||||++..++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 6788999999999999984444
No 444
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.42 E-value=9.9e-05 Score=45.47 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.4
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 445
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.42 E-value=7.7e-05 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.4
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999874
No 446
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.41 E-value=7.8e-05 Score=49.41 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.5
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++|+|++|+|||||++.+.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999986
No 447
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.41 E-value=4.3e-05 Score=48.24 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.9
Q ss_pred ceeEEECCCCCChhHHHHHHHh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVAN 65 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~ 65 (102)
-.++++|++|+|||||++.+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999999986
No 448
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.41 E-value=6.6e-05 Score=50.97 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.3
Q ss_pred CCceeEEECCCCCChhHHHHHHHhh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
+...++|+|++|+|||||++.+.+.
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4557999999999999999999985
No 449
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.41 E-value=9.9e-05 Score=45.38 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.7
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 450
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.40 E-value=8.3e-05 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=22.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVAN 65 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~ 65 (102)
.|..++|.|+||+||||++..+.+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 478999999999999999999887
No 451
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.40 E-value=0.0001 Score=45.78 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=20.4
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 452
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.40 E-value=8.7e-05 Score=46.39 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.5
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 453
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.39 E-value=0.00011 Score=52.18 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=25.9
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
++.+|+.+.|.|+||+|||||+..++...
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998888743
No 454
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.39 E-value=9.8e-05 Score=46.34 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.5
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++|+|++|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 455
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.38 E-value=0.00011 Score=45.58 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.6
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
No 456
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.38 E-value=9.5e-05 Score=45.73 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.8
Q ss_pred CCceeEEECCCCCChhHHHHHHHhh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
+.-.++++|++|+|||||++.+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999999864
No 457
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.38 E-value=9.6e-05 Score=47.11 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.0
Q ss_pred CceeEEECCCCCChhHHHHHHHhhh
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
...++++|++|+|||||+..+++..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998764
No 458
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.38 E-value=0.00011 Score=48.76 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=20.3
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++|+|++|+|||||++.+.+.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
No 459
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.38 E-value=9.5e-05 Score=46.08 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.6
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 46899999999999999999873
No 460
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.37 E-value=0.00011 Score=45.74 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.0
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 461
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.37 E-value=0.00015 Score=44.44 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=20.9
Q ss_pred CceeEEECCCCCChhHHHHHHHhh
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.-.++++|++|+|||||++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999864
No 462
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.37 E-value=0.00012 Score=45.66 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.9
Q ss_pred CceeEEECCCCCChhHHHHHHHhh
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.-.++++|++|+|||||++.+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999864
No 463
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.37 E-value=8.2e-05 Score=45.78 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.0
Q ss_pred CCceeEEECCCCCChhHHHHHHHh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVAN 65 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~ 65 (102)
..-.++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455799999999999999999874
No 464
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.36 E-value=9.8e-05 Score=46.05 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.8
Q ss_pred eeEEECCCCCChhHHHHHHHhhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 465
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.36 E-value=0.00012 Score=46.21 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.2
Q ss_pred CCceeEEECCCCCChhHHHHHHHhh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
..-.++++|++|+|||||++.+.+.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999999864
No 466
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.36 E-value=9.8e-05 Score=46.48 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
..-.++|+|++|+|||||++.+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34568999999999999999998743
No 467
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.35 E-value=0.00012 Score=45.63 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.7
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 468
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.35 E-value=0.00013 Score=45.93 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.0
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++|+|++|+|||||++.+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 469
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.34 E-value=0.00013 Score=45.47 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.2
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 35899999999999999988764
No 470
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.34 E-value=0.00012 Score=45.08 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.7
Q ss_pred ceeEEECCCCCChhHHHHHHHh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVAN 65 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~ 65 (102)
-.++++|++|+|||||++.+.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3689999999999999999985
No 471
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.34 E-value=0.00011 Score=46.33 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.1
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 472
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.34 E-value=0.00012 Score=45.96 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.4
Q ss_pred CCCceeEEECCCCCChhHHHHHHHh
Q psy16321 41 KPPKGVILYGPPGTGKTLLAKAVAN 65 (102)
Q Consensus 41 ~~~~~~~l~Gp~GsGKStl~~~i~~ 65 (102)
.+.-.++++|++|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3455799999999999999999975
No 473
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.34 E-value=6.9e-05 Score=47.25 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.1
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++|+|++|+|||||++.+.+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999753
No 474
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.33 E-value=8.5e-05 Score=51.60 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.6
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++|+|++|+|||||++.|.+.
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4699999999999999998764
No 475
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.32 E-value=0.00011 Score=48.15 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.4
Q ss_pred CceeEEECCCCCChhHHHHHHHhh
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.-.++|+|++|+|||||++.|.+.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999874
No 476
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.32 E-value=0.00017 Score=46.43 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.0
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
++.+.|-|+-||||||+++.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 46789999999999999999998764
No 477
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.32 E-value=0.00012 Score=46.53 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.2
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++|+|++|+|||||++.+.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999998764
No 478
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.31 E-value=0.00012 Score=48.88 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.9
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++|+|++|+|||||++++.+.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999985
No 479
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.31 E-value=0.00013 Score=50.96 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.7
Q ss_pred eeEEECCCCCChhHHHHHHHhhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
.++|+|+||+|||||+++|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999863
No 480
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.31 E-value=9.7e-05 Score=45.30 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.5
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 481
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.31 E-value=0.00012 Score=47.13 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.2
Q ss_pred CceeEEECCCCCChhHHHHHHHhh
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.-.++|+|++|+|||||++.+.+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999874
No 482
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.30 E-value=0.00014 Score=46.22 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.1
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 483
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.30 E-value=0.00033 Score=50.23 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 14 LDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 14 ~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
+...+..+.+.+............+ ..+-.++|+|++|+|||||++.+.+..
T Consensus 197 ~~~~i~~l~~~l~~~~~~~~~~~~~--r~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 197 IISDIENIAAEISQLLATKDKGELL--RTGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHH--HHCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhh--cCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3444455554444433333322221 234469999999999999999999853
No 484
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.30 E-value=0.00014 Score=49.30 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.9
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
..++|+|.+|+|||||++.+.+.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999984
No 485
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.30 E-value=0.00013 Score=46.48 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.8
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 486
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.30 E-value=0.00019 Score=52.07 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=21.4
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
+...++|+|++|+||||++..|+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999543
No 487
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.30 E-value=0.0001 Score=51.42 Aligned_cols=28 Identities=43% Similarity=0.595 Sum_probs=24.6
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321 39 GIKPPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
+++++..+.|.||+|+|||||+..++..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3678999999999999999999887764
No 488
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.29 E-value=0.00013 Score=45.22 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=21.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHhh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
..-.++++|++|+|||||++.+.+-
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999853
No 489
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.29 E-value=0.00017 Score=45.72 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.6
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 490
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.29 E-value=0.00021 Score=48.91 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.7
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
+..++|+||+|+|||+++++++..+.
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHh
Confidence 34689999999999999999998754
No 491
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.29 E-value=0.00018 Score=51.47 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=23.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
....++++|.+||||||+++.|+..+.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345789999999999999999998653
No 492
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.28 E-value=0.00011 Score=45.94 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.5
Q ss_pred eeEEECCCCCChhHHHHHHHhh
Q psy16321 45 GVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 45 ~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.++++|++|+|||||++.+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 493
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.28 E-value=0.00013 Score=45.52 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.1
Q ss_pred CceeEEECCCCCChhHHHHHHHhh
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
...++|+|++|+|||||++.+.+.
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999873
No 494
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.28 E-value=0.00012 Score=46.13 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=19.9
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999863
No 495
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.28 E-value=0.00014 Score=45.97 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.7
Q ss_pred ceeEEECCCCCChhHHHHHHHhh
Q psy16321 44 KGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 44 ~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
-.++++|++|+|||||++.+.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 496
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.27 E-value=0.00018 Score=51.79 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=24.9
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321 40 IKPPKGVILYGPPGTGKTLLAKAVANQTS 68 (102)
Q Consensus 40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~ 68 (102)
+-.|+.++|+||||+|||||++.|+....
T Consensus 148 i~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp EETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 45688999999999999999999887543
No 497
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.27 E-value=0.00022 Score=46.51 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=25.3
Q ss_pred CceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQTSATF 71 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~ 71 (102)
..+++|.|++||||||+++.|+..+....
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~ 42 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHF 42 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcE
Confidence 45799999999999999999999877654
No 498
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.27 E-value=0.00021 Score=49.34 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQT 67 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~~ 67 (102)
....++|+|++|+||||++..++..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999998764
No 499
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.26 E-value=0.00016 Score=45.34 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=20.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHhh
Q psy16321 42 PPKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 42 ~~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
..-.++++|++|+|||||++.+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999999864
No 500
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.26 E-value=0.00012 Score=45.23 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.1
Q ss_pred CceeEEECCCCCChhHHHHHHHhh
Q psy16321 43 PKGVILYGPPGTGKTLLAKAVANQ 66 (102)
Q Consensus 43 ~~~~~l~Gp~GsGKStl~~~i~~~ 66 (102)
.-.++++|++|+|||||++.+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446899999999999999999864
Done!