RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16321
(102 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 104 bits (262), Expect = 6e-30
Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
D +E+ E VE L P ++++G K PKGV++ GPPGTGKTLLAKA+A + F
Sbjct: 15 AGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF 73
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+ GS+ ++ ++G G VR
Sbjct: 74 FTISGSDFVEMFVGVGASRVR 94
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 103 bits (258), Expect = 2e-29
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
+ +E+KE VE L +P + EMG + PKGV+L GPPG GKT LA+AVA + F
Sbjct: 12 AGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPF 70
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+ GS+ ++ ++G G VR
Sbjct: 71 ITASGSDFVEMFVGVGAARVR 91
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 265
Score = 98.0 bits (243), Expect = 4e-27
Identities = 36/81 (44%), Positives = 54/81 (66%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G L+ +E++E V+ P+ HP+ + + G+ P KGV+ YGPPG GKTLLAKA+AN+ A F
Sbjct: 10 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 69
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+ + G EL+ + G+ VR
Sbjct: 70 ISIKGPELLTMWFGESEANVR 90
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 258
Score = 97.8 bits (242), Expect = 4e-27
Identities = 41/81 (50%), Positives = 58/81 (71%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
G Q+ +IKE VELPL HP ++ +G+KPP+G++LYGPPGTGKTL+A+AVAN+T A F
Sbjct: 7 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 66
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
+ G E++ K G+ +R
Sbjct: 67 FLINGPEIMSKLAGESESNLR 87
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 72.0 bits (176), Expect = 5e-17
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 21 IKESVELPLTHPEYYEEMGIKPPKGVIL-YGPPGTGKTLLAKAVANQTSA--TFLRVVGS 77
+ + EL P E G + G+++ G +GKT L A+ + V
Sbjct: 100 VDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFG 159
Query: 78 ELIQKYLGDGPKLVRVALVPEVRN 101
E + Y D V + +
Sbjct: 160 EPLSGYNTDFNVFVD-DIARAMLQ 182
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 60.4 bits (145), Expect = 5e-13
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 15 DVQIQE-IKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73
D Q + + +++E + + ++ P +L G PG+GKT L A+ +T +
Sbjct: 8 DKQFENRLNDNLEELIQGKK-----AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIV 62
Query: 74 VVGSEL---IQKYLGDGPKLVRVA 94
+ + +
Sbjct: 63 IDNDTFKQQHPNFDELVKLYEKDV 86
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 59.2 bits (142), Expect = 1e-12
Identities = 13/77 (16%), Positives = 31/77 (40%)
Query: 11 RGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT 70
+ + ++ + + P V+L GPP +GKT LA +A +++
Sbjct: 8 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP 67
Query: 71 FLRVVGSELIQKYLGDG 87
F+++ + + +
Sbjct: 68 FIKICSPDKMIGFSETA 84
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 58.5 bits (141), Expect = 3e-12
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Query: 14 LDVQIQEIKESVELPLTHPEYYEEM--GIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
L + ++ V ++ + M I + + GP +GKT LA A+
Sbjct: 129 LHCLLPKMDSVVY------DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKA 182
Query: 72 LRVVGSELIQKY-LGDGPKLVRV 93
L V + LG V
Sbjct: 183 LNVNLPLDRLNFELGVAIDQFLV 205
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 49.4 bits (116), Expect = 5e-09
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
Query: 15 DVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ----TSAT 70
+ Q+Q++ + L +P L G PGTGKT+ + + T+A
Sbjct: 22 EQQLQQLDILLGNWLRNPG-------HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTAR 74
Query: 71 FLRVVGSELIQKYLGDGPKLVR 92
F+ + G G
Sbjct: 75 FVYINGFIYRNFTAIIGEIARS 96
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 48.7 bits (115), Expect = 1e-08
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83
PK +++ GP G GKT +A+ +A +A F++V ++ +
Sbjct: 47 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVG 89
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 47.1 bits (110), Expect = 4e-08
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 15 DVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73
+ + + L ++ + G G GKT LAK + S +
Sbjct: 22 RGEAEALARIYLNRLLSGAGLSDVNM----IYGSIGRVGIGKTTLAKFTVKRVSEAAAK 76
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 44.9 bits (105), Expect = 2e-07
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 18 IQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77
Q+++ +E +P + ++L+GPPG GKT LA +A++ G
Sbjct: 18 KQKLRVYLEAAKARK--------EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGP 69
Query: 78 ELIQK 82
+ +
Sbjct: 70 AIEKP 74
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 44.0 bits (103), Expect = 5e-07
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ 81
PK +++ GP G GKT +A+ +A +A F++V ++ +
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 87
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 43.2 bits (100), Expect = 7e-07
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 15 DVQIQEIKESVELPLTHPEY----YEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67
+ ++K + + + G + +LYGPPG GKT A VA +
Sbjct: 20 KGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 76
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 39.7 bits (91), Expect = 1e-05
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 44 KGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG 87
K V + G +GK++L +A + T G E + + LG
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGD 51
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 39.5 bits (91), Expect = 2e-05
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 45 GVILYGPPGTGKTLLAKAVA 64
GV+++G GTGK+ +A+A
Sbjct: 30 GVLVFGDRGTGKSTAVRALA 49
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 38.4 bits (88), Expect = 3e-05
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG 87
++L G PG+GK+ +A+A+AN + +L
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGR 48
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 37.8 bits (86), Expect = 6e-05
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 41 KPPKGVILYGPPGTGKTLLAKAVANQ 66
+ +++ PG G L A++
Sbjct: 22 RGHHALLIQALPGMGDDALIYALSRY 47
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 37.3 bits (85), Expect = 7e-05
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83
+ +IL G GK+ + + + + +L LI+
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAM 43
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 37.3 bits (85), Expect = 7e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 44 KGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76
+ V L GPPG GKT L + ++ + V G
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 37.6 bits (86), Expect = 8e-05
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 18 IQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77
+++ ++E E V+L GPPG GKT LA +A++ G
Sbjct: 18 KKKLSLALEAAKMRGEV--------LDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGP 69
Query: 78 ELIQK 82
L+++
Sbjct: 70 VLVKQ 74
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 36.6 bits (84), Expect = 2e-04
Identities = 1/28 (3%), Positives = 9/28 (32%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLR 73
+++ G + ++ + +
Sbjct: 18 ILINGEDLSYPREVSLELPEYVEKFPPK 45
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 36.6 bits (83), Expect = 2e-04
Identities = 8/72 (11%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 28 PLTHPEYY-------EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI 80
P + + + E++ ++ G TGK+ + K N+ + ++ + +
Sbjct: 7 PKDNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFE 66
Query: 81 QKYLGDGPKLVR 92
++ +
Sbjct: 67 ERNYISYKDFLL 78
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 36.0 bits (82), Expect = 3e-04
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 64
YK L + L Q + L E ++L GP G+GKTL+A+ +A
Sbjct: 37 YKRLSFKEKLKKQDNQDSNVELEHLEEVE-------LSKSNILLIGPTGSGKTLMAQTLA 89
Query: 65 NQTSATFLRV 74
Sbjct: 90 KHLDIPIAIS 99
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 35.1 bits (79), Expect = 4e-04
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 44 KGVILYGPPGTGKTLLAKAVANQTSATFLRV 74
+ + L GP G GK+ + + +A Q + F
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 33
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 35.2 bits (79), Expect = 5e-04
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 41 KPPKGVILYGPPGTGKTLLAKAVANQ 66
+ ++LYGP GTGK A+
Sbjct: 31 RDLPHLLLYGPNGTGKKTRCMALLES 56
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 35.0 bits (79), Expect = 6e-04
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRV 74
+L G G+GK+ +A VA+Q A FL
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFLDG 37
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 34.3 bits (77), Expect = 0.001
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 41 KPPKGVILY--GPPGTGKTLLAKAVANQTSATFLRVV 75
+ +G ++ G +GK +A+A+ + R V
Sbjct: 2 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSV 38
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 34.2 bits (77), Expect = 0.001
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 41 KPPKG--VILYGPPGTGKTLLAKAVANQTSATF 71
+ PKG +++ G PGTGKT +A+ +A +
Sbjct: 1 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQ 33
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 33.6 bits (75), Expect = 0.002
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 39 GIKPPKGVILYGPPGTGKTLLAKAVA 64
GI+ ++G TGKT + +A
Sbjct: 19 GIETGSITEMFGEFRTGKTQICHTLA 44
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 33.5 bits (75), Expect = 0.002
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFL 72
I+ GP G GK+ K +A Q +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAY 31
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 33.4 bits (75), Expect = 0.002
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFL 72
++L G PG GKT L K +A+++ ++
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYI 33
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 33.4 bits (75), Expect = 0.002
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 44 KGVILYGPPGTGKTLLAKAVANQTSATFL 72
K ++ G G+GK+ LA+A+A FL
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKDLDLVFL 29
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 33.3 bits (75), Expect = 0.002
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 42 PPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73
P+ V+ G PG GK+ + +
Sbjct: 13 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 44
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 33.4 bits (75), Expect = 0.002
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 44 KGVILYGPPGTGKTLLAKAVANQTSATFL 72
+ + + G G G T + + +A F+
Sbjct: 3 EPIFMVGARGCGMTTVGRELARALGYEFV 31
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 33.0 bits (74), Expect = 0.003
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV 74
M P V + G PG+GK + L
Sbjct: 1 MEKSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 33.0 bits (74), Expect = 0.003
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRV 74
+ GTGKT L K + A +R
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRP 33
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 33.0 bits (74), Expect = 0.003
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFL 72
+K K + + G PG+GK + + + T L
Sbjct: 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHL 37
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 33.0 bits (74), Expect = 0.003
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFL 72
+L G PG+GK+ + + +A L
Sbjct: 4 AVLVGLPGSGKSTIGRRLAKALGVGLL 30
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 33.0 bits (74), Expect = 0.003
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRV 74
P +++ G P GKT ++K + + +
Sbjct: 2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPT 33
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 32.9 bits (74), Expect = 0.003
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 44 KGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75
K ++L G G G+ + + + F +
Sbjct: 4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPI 35
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 32.7 bits (73), Expect = 0.004
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 39 GIKPPKGVILYGPPGTGKTLLAKAVA 64
+ L P G GK++LA +A
Sbjct: 25 NMVAGTVGALVSPGGAGKSMLALQLA 50
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 32.6 bits (73), Expect = 0.004
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 43 PKGV--ILYGPPGTGKTLLAKAVANQ 66
PKGV +L GPPG GK A +A
Sbjct: 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 32.6 bits (74), Expect = 0.004
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 46 VILYGPPGTGKTLLAKAVANQ 66
V++ G G GK ++A+ +
Sbjct: 26 VLITGESGVGKEVVARLIHKL 46
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 32.2 bits (72), Expect = 0.005
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVV 75
+++ GP GTGK+ L K + + +F V
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSV 33
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 32.2 bits (72), Expect = 0.005
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVV 75
V+L GP G GK+ L K + + S+ F V
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSV 32
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 32.2 bits (72), Expect = 0.007
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 39 GIKPPKGVILYGPPGTGKTLLAKAVANQ 66
G ++ G GTGKTLL
Sbjct: 22 GFFKDSIILATGATGTGKTLLVSRFVEN 49
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 31.8 bits (71), Expect = 0.007
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV 74
P K V++ G P +GK + + + +
Sbjct: 2 DPLK-VMISGAPASGKGTQCELIKTKYQLAHISA 34
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),
helicase domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 31.9 bits (71), Expect = 0.007
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 17 QIQEI---KESVELPLTHPEYYEEM--GIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
+I+E +ESV L + + G + + +++ G GK+ + A Q
Sbjct: 4 RIREHLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM 63
Query: 72 LRVVG 76
+ VG
Sbjct: 64 GKKVG 68
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 31.6 bits (70), Expect = 0.009
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 44 KGVI--LYGPPGTGKTLLAKAVANQTSATF 71
+G L G G GKT ++ A+
Sbjct: 18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHG 47
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 31.5 bits (70), Expect = 0.010
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 39 GIKPPKGVILYGPPGTGKTLLA 60
G+ + ++ G GTGKTL +
Sbjct: 22 GLPIGRSTLVSGTSGTGKTLFS 43
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 31.6 bits (70), Expect = 0.011
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 39 GIKPPKGVILYGPPGTGKTLLAKAVA 64
G++ L+G TGK+ L +A
Sbjct: 30 GVETGSITELFGEFRTGKSQLCHTLA 55
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 31.2 bits (69), Expect = 0.011
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFL 72
+ + GP G GK L KA+A L
Sbjct: 6 ITIDGPSGAGKGTLCKAMAEALQWHLL 32
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 31.2 bits (69), Expect = 0.012
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 39 GIKPPKGVILYGPPGTGKTLLAKAVA 64
G++ G G+GKT +
Sbjct: 30 GLESQSVTEFAGVFGSGKTQIMHQSC 55
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 194
Score = 31.1 bits (69), Expect = 0.012
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 43 PKGVILYGPPGTGKTLLAKAVAN 65
P V + G PG GK +
Sbjct: 1 PLVVFVLGGPGAGKGTQCARIVE 23
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 31.1 bits (69), Expect = 0.013
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFL 72
++L GPPG GK A + + A L
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFHAAHL 31
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 31.2 bits (69), Expect = 0.015
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 39 GIKPPKGVILYGPPGTGKTLLA 60
GI+ +G TGKT L+
Sbjct: 33 GIESMAITEAFGEFRTGKTQLS 54
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 30.7 bits (68), Expect = 0.016
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 50 GPPGTGKTLLAKAVANQTSATFL 72
GP +GK+ +AK +A T+L
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTYL 32
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 30.6 bits (69), Expect = 0.019
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 41 KPPK--GVILYGPPGTGKTLLAKAVAN 65
PK ++ GP TGK+ + +
Sbjct: 49 GTPKKNCLVFCGPANTGKSYFGMSFIH 75
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 30.5 bits (67), Expect = 0.022
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 43 PKGVILYGPPGTGKTLLAKAVANQ 66
K ++ G PG+GK+ A+ +
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAK 25
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 30.7 bits (68), Expect = 0.024
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 36 EEMGIKPPKGVILYGPPGTGKTL 58
+++ + + I+ PG GKT
Sbjct: 3 DDI-FRKKRLTIMDLHPGAGKTK 24
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 30.4 bits (67), Expect = 0.025
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 39 GIKPPKGVILYGPPGTGKTLLA 60
GI+ ++G G+GKT LA
Sbjct: 32 GIETQAITEVFGEFGSGKTQLA 53
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain
{Caenorhabditis elegans [TaxId: 6239]}
Length = 277
Score = 30.2 bits (67), Expect = 0.026
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68
EM + L+G G+GK+++A +++
Sbjct: 38 EMCDLDSFFLFLHGRAGSGKSVIASQALSKSD 69
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 30.3 bits (67), Expect = 0.027
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 44 KGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75
K V++ G PG G T ++ + +
Sbjct: 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYK 33
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 30.3 bits (67), Expect = 0.027
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFL 72
V+L GPPG GK A +A + +
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQI 29
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 30.3 bits (68), Expect = 0.027
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 46 VILYGPPGTGKTLLAKAVAN 65
+ L+GP TGKT +A+A+A+
Sbjct: 107 IWLFGPATTGKTNIAEAIAH 126
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 30.2 bits (67), Expect = 0.028
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVV 75
I+ P G GK+ L +A+ +V
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVS 34
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 30.2 bits (67), Expect = 0.029
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFL 72
+ G PG+GK ++ + L
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHFELKHL 35
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 30.1 bits (66), Expect = 0.035
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 47 ILYGPPGTGKTLLAKAVANQ 66
+ YGPPGTGKT A+ +
Sbjct: 37 LFYGPPGTGKTSTILALTKE 56
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 29.5 bits (65), Expect = 0.044
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFL 72
++L G PG GK A+ + +
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYGIPHI 29
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 29.6 bits (65), Expect = 0.050
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRV 74
+I+ G PG GKT L K + + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGF 31
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 29.6 bits (65), Expect = 0.053
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFL 72
+ + G PG GK + + S L
Sbjct: 11 IFVLGGPGAGKGTQCEKLVKDYSFVHL 37
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 29.2 bits (64), Expect = 0.054
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 44 KGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75
K I+ G PG GK+ + V +
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNK 33
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 28.9 bits (64), Expect = 0.061
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 7/41 (17%)
Query: 41 KPPKGVILYGPPGTGKTLLAKAVAN-------QTSATFLRV 74
+ V L G G GKT L + + S T+ V
Sbjct: 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLV 71
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 29.1 bits (64), Expect = 0.063
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFL 72
+IL G P GK A+ + + +
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQI 29
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 28.9 bits (63), Expect = 0.065
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 40 IKPPKGVILYGPPGTGKTLLA 60
+K +L PG GKT
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRF 24
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 29.2 bits (64), Expect = 0.071
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 46 VILYGPPGTGKTLLAKAVANQ 66
V+L GP GK+ + + + +
Sbjct: 5 VVLSGPSAVGKSTVVRCLRER 25
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 29.3 bits (65), Expect = 0.072
Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 19/82 (23%)
Query: 8 LKKRGSLD--VQIQEIKESVELPLTH----------------PEYYEEMGIKPPKGVILY 49
+ + ++ + ++E+ E + LPL+ ++ G + P + +
Sbjct: 28 IARLKGINEDLSLEEVAE-IYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIA 86
Query: 50 GPPGTGKTLLAKAVANQTSATF 71
G GK+ A+ + S
Sbjct: 87 GSVAVGKSTTARVLQALLSRWP 108
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 28.7 bits (63), Expect = 0.089
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 46 VILYGPPGTGKTLLAKAVAN 65
++L G PG GK A +
Sbjct: 3 IVLMGLPGAGKGTQADRIVE 22
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 28.6 bits (62), Expect = 0.094
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 40 IKPPKGVI--LYGPPGTGKTLLAKAVANQ 66
IK ++ + G +GKT LA ++
Sbjct: 17 IKTAGRLVLGIDGLSRSGKTTLANQLSQT 45
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 29.0 bits (63), Expect = 0.095
Identities = 7/31 (22%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 35 YEEMGIKPPKGV-ILYGPPGTGKTLLAKAVA 64
+ + ++ +G+ ++ G G+GK+ L A+
Sbjct: 14 HSDTVVEFKEGINLIIGQNGSGKSSLLDAIL 44
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId:
5076]}
Length = 208
Score = 28.6 bits (63), Expect = 0.098
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 66
E+ + + L G +GK+ LA + +Q
Sbjct: 17 TELRNQRGLTIWLTGLSASGKSTLAVELEHQ 47
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.4 bits (62), Expect = 0.15
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVV----GSELIQKYLGDGPKLV 91
P+ +++ G GTGK++L + +A R+V +++ K+ D ++
Sbjct: 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKFGRDKDIIL 102
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 28.3 bits (61), Expect = 0.17
Identities = 7/30 (23%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 35 YEEMGIKPPKGV-ILYGPPGTGKTLLAKAV 63
+ + ++ +G+ ++ G G+GK+ L A+
Sbjct: 14 HSDTVVEFKEGINLIIGQNGSGKSSLLDAI 43
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 27.5 bits (60), Expect = 0.23
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 46 VILYGPPGTGKTL-LAKAVANQTSATFLRVVGSELIQ 81
L+ P G+GK+ + A A Q +
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATL 47
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 27.3 bits (60), Expect = 0.26
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 13/61 (21%)
Query: 7 ALKKRGSLDVQI---QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAV 63
L + G +D I +E++ ++++ + + +L G G GKT +A+ +
Sbjct: 10 QLARVGGIDPLIGREKELERAIQV----------LCRRRKNNPLLVGESGVGKTAIAEGL 59
Query: 64 A 64
A
Sbjct: 60 A 60
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 27.3 bits (60), Expect = 0.29
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 46 VILYGPPGTGKTLLAKAVA 64
+L G PG GKT + + +A
Sbjct: 46 PVLIGEPGVGKTAIVEGLA 64
Score = 25.8 bits (56), Expect = 1.2
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 17 QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR-VV 75
+++E + ++ E E + YG + + A F+R V
Sbjct: 314 KLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEV 373
Query: 76 GSELI 80
E I
Sbjct: 374 TEEDI 378
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 27.0 bits (59), Expect = 0.38
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 41 KPPKGVILYGPPGTGKTLLAKAVANQ 66
+ + G G GKT +A+ +A
Sbjct: 32 RIHHAYLFSGTRGVGKTSIARLLAKG 57
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 26.5 bits (58), Expect = 0.47
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 19/64 (29%)
Query: 1 MMCSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLA 60
M +A K+ G+ + + E+ + +L GP G GK++
Sbjct: 1 MFLKVRAEKRLGNFRLNV-----DFEMG-------RDY-------CVLLGPTGAGKSVFL 41
Query: 61 KAVA 64
+ +A
Sbjct: 42 ELIA 45
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 26.5 bits (57), Expect = 0.51
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 17/56 (30%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVRN 101
V+ G G+GKT L +YL D K+ V L V+
Sbjct: 3 VVFVGTAGSGKTTLTGE-----------------FGRYLEDNYKVAYVNLDTGVKE 41
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 26.4 bits (58), Expect = 0.52
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 44 KGVILYGPPGTGKTLLAKAVANQ------TSATFLRVVGSELI 80
GV+L G G GK+ A + N+ A + +G+ L
Sbjct: 16 VGVLLTGRSGIGKSECALDLINKNHLFVGDDAIEIYRLGNRLF 58
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 26.7 bits (58), Expect = 0.54
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 32 PEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 66
PE++E G K P + GP G+GK+ + + N
Sbjct: 17 PEWFET-GNKCPLFIFFSGPQGSGKSFTSIQIYNH 50
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 26.7 bits (58), Expect = 0.54
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 14/80 (17%)
Query: 5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 64
Y+ +G I + E++ + V L G GTGKT+ V
Sbjct: 4 YRGPSPKGDQPKAIAGLVEALR--------------DGERFVTLLGATGTGKTVTMAKVI 49
Query: 65 NQTSATFLRVVGSELIQKYL 84
L + ++++ L
Sbjct: 50 EALGRPALVLAPNKILAAQL 69
>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 418
Score = 26.6 bits (59), Expect = 0.58
Identities = 8/31 (25%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Query: 15 DVQIQEIKESV--ELPLTHPEY--YEEMGIK 41
D ++ +I + E+P+ HP++ ++++G+K
Sbjct: 232 DPELFQIPPELVLEVPIRHPKFDWFKDLGLK 262
>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Bacillus subtilis [TaxId: 1423]}
Length = 363
Score = 26.6 bits (59), Expect = 0.60
Identities = 6/19 (31%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Query: 26 ELPLTHPEY--YEEMGIKP 42
E+P+THP+ + ++ +K
Sbjct: 194 EVPITHPDIEAFSDLELKW 212
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 26.3 bits (57), Expect = 0.63
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 50 GPPGTGKTLLAKAVANQTSATFLRVV 75
G +GKT L + RV
Sbjct: 8 GYKHSGKTTLMEKWVAAAVREGWRVG 33
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor
Rho, ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 26.5 bits (58), Expect = 0.65
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 48 LYGPPGTGKTLLAKAVANQTSATFLRVV 75
+ PP GKT+L + +A + V
Sbjct: 48 IVAPPKAGKTMLLQNIAQSIAYNHPDCV 75
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 26.2 bits (56), Expect = 0.68
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSAT 70
+++ G GKT + K + T
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDT 29
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 26.4 bits (58), Expect = 0.68
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 50 GPPGTGKTLLAKAVANQTSATFLRVV 75
G G G + + ++ V
Sbjct: 11 GSSGAGTSTVKHTFDQIFRREGVKAV 36
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 26.0 bits (57), Expect = 0.70
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 44 KGVILYGPPGTGKTLLA 60
GV++ G G GK+ A
Sbjct: 15 LGVLITGDSGVGKSETA 31
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 26.2 bits (56), Expect = 0.71
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSA 69
G+K V++ G P GK+ L A+A + +A
Sbjct: 1 GMK----VVIAGRPNAGKSSLLNALAGREAA 27
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 26.1 bits (56), Expect = 0.72
Identities = 3/17 (17%), Positives = 7/17 (41%)
Query: 50 GPPGTGKTLLAKAVANQ 66
G +GK+ + +
Sbjct: 9 GGTASGKSSVCAKIVQL 25
>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Cow (Bos taurus) [TaxId: 9913]}
Length = 416
Score = 26.3 bits (58), Expect = 0.80
Identities = 6/31 (19%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 15 DVQIQEIKESV--ELPLTHPEY--YEEMGIK 41
++ + + E+PL HP + +G++
Sbjct: 235 APELFVLPPELVLEVPLEHPTLEWFAALGLR 265
>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 421
Score = 26.2 bits (58), Expect = 0.82
Identities = 7/18 (38%), Positives = 14/18 (77%), Gaps = 2/18 (11%)
Query: 26 ELPLTHPEY--YEEMGIK 41
E+ + HP+Y ++E+G+K
Sbjct: 246 EVTMEHPKYEWFQELGLK 263
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 25.8 bits (56), Expect = 0.86
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75
+K L G G+GKT A +A R +
Sbjct: 7 LKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL 42
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 25.9 bits (56), Expect = 0.91
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75
K P ++L G GTGK A +A +V
Sbjct: 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVG 44
>d1mjta_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Staphylococcus aureus [TaxId: 1280]}
Length = 346
Score = 25.8 bits (57), Expect = 0.91
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 15 DVQIQEIKESV--ELPLTHPEY--YEEMGIKP 42
V+ E S+ E+P+ H Y ++ +K
Sbjct: 168 SVKFYEYPTSLIKEVPIEHNHYPKLRKLNLKW 199
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 25.6 bits (55), Expect = 0.93
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 46 VILYGPPGTGKT-LLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVAL 95
+++ G GKT L + + + F+ VG + K + K +++ +
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 58
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 25.7 bits (56), Expect = 0.94
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 44 KGVILYGPPGTGKTLLA 60
GV++ G G GK+ A
Sbjct: 16 VGVLITGDSGIGKSETA 32
>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase
{Pyrococcus furiosus [TaxId: 2261]}
Length = 74
Score = 25.1 bits (55), Expect = 0.96
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEM 38
LKKR + I +IK+ + LP+ + EE+
Sbjct: 19 SLLKKRLEIAQAIGKIKKELNLPIEDRKREEEV 51
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima
[TaxId: 2336]}
Length = 308
Score = 25.8 bits (55), Expect = 0.97
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 34 YYEEMGIKPPKGV-ILYGPPGTGKTLLAKAVA 64
+ I V + GP G+GK+ + A+
Sbjct: 14 FGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIK 45
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 25.7 bits (55), Expect = 0.98
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 44 KGVILYGPPGTGKT-LLAKAVANQTSATF 71
+ V+ G +GKT L + + Q T
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQ 29
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 25.8 bits (55), Expect = 0.99
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD 86
++ G GKT L + N AT + +G+
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 43
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 25.7 bits (56), Expect = 1.0
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 50 GPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83
G G GK+ + +A+ S + E + +
Sbjct: 13 GVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYW 46
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation
factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Length = 213
Score = 25.6 bits (55), Expect = 1.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75
+ +YG GTGKT L +A N+ RV+
Sbjct: 34 SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVI 68
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 25.5 bits (54), Expect = 1.1
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSA 69
V++ G P GK+ L + + A
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKA 26
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 25.5 bits (55), Expect = 1.4
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 41 KPPKGVILYGPPGTGK-TLLAK 61
+PP +++ G GTGK T K
Sbjct: 9 EPPFVIMVVGVNGTGKTTSCGK 30
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 25.5 bits (56), Expect = 1.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 48 LYGPPGTGKTLLAKAVANQTS 68
L+G G GKT+L + N +
Sbjct: 73 LFGGAGVGKTVLIMELINNVA 93
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia
coli [TaxId: 562]}
Length = 222
Score = 25.4 bits (54), Expect = 1.5
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 35 YEEMGIKPPKGV-ILYGPPGTGKTLLAKAV 63
+ + V L G G GK+ A
Sbjct: 15 FFARTFDLDELVTTLSGGNGAGKSTTMAAF 44
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish
(Danio rerio) [TaxId: 7955]}
Length = 298
Score = 25.4 bits (54), Expect = 1.5
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 33 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAV 63
+ I+ G I+ G GKTL +
Sbjct: 69 DCVTGRRIENSYGCIMADEMGLGKTLQCITL 99
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 25.3 bits (55), Expect = 1.6
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 40 IKPPKGVILYGPPGTGKTLLAKAVA 64
I+ + + + G G+GKT L +
Sbjct: 59 IEKGEMLAITGSTGSGKTSLLMLIL 83
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 25.1 bits (54), Expect = 1.7
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 40 IKPPKGVILY-GPPGTGKTLLAKAVANQTSATFLRVV 75
++P V+L G G GKT + +V+
Sbjct: 2 VEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVM 38
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 25.3 bits (54), Expect = 1.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 46 VILYGPPGTGKTLLAKAVANQ 66
++ GPPG GKT A A+A +
Sbjct: 48 LLFAGPPGVGKTTAALALARE 68
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 25.0 bits (53), Expect = 1.8
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSAT 70
+I G GK+ L + +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRR 27
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 25.0 bits (54), Expect = 1.8
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 41 KPPKGVILYGPPGTGK-TLLAK 61
K P +++ G G GK T + K
Sbjct: 7 KAPFVILMVGVNGVGKTTTIGK 28
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 25.1 bits (53), Expect = 1.9
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSAT 70
+++ G G GKT + + T
Sbjct: 8 ILILGLDGAGKTTILYRLQVGEVVT 32
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 25.0 bits (54), Expect = 1.9
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRV 74
++ GP G GKTL + +A R+
Sbjct: 29 FVILGPTGAGKTLFLELIAGFHVPDSGRI 57
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 24.9 bits (53), Expect = 2.0
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVVG 76
+++ G GKT + + S T + VG
Sbjct: 15 ILMLGLDAAGKTTILYKLKLGQSVTTIPTVG 45
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 24.7 bits (53), Expect = 2.0
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 46 VILYGPPGTGKT-LLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVAL 95
++L G G GK+ LL + V ++ + +F+ +G + K + K V++ +
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQI 55
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 24.8 bits (53), Expect = 2.1
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 50 GPPGTGKTLLAKAVANQTSATFLRVVGSE 78
G PG GK+ A+ + +A +V
Sbjct: 58 GVPGVGKSTTIDALGSLLTAAGHKVAVLA 86
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 25.0 bits (54), Expect = 2.1
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 50 GPPGTGKTLLAKAVANQTSATFLRVV 75
G G GKT A+ + + T R++
Sbjct: 12 GAYGIGKTTAAEEFLHHFAITPNRIL 37
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 24.7 bits (52), Expect = 2.2
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 29 LTHPEYYEEMGIKPPKG--VILYGPPGTGKTLLA 60
L P Y+E+ K ++ P G GKTL+A
Sbjct: 7 LIQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIA 40
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 25.1 bits (53), Expect = 2.2
Identities = 5/20 (25%), Positives = 9/20 (45%), Gaps = 2/20 (10%)
Query: 46 VILYGPPGTGKT--LLAKAV 63
++ G+GKT + K
Sbjct: 17 CLVLAGAGSGKTRVITNKIA 36
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 25.0 bits (53), Expect = 2.2
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 43 PKGVILYGPPGTGKTLLAKAVAN 65
P+ + + G GK+ K +
Sbjct: 2 PRRLSIEGNIAVGKSTFVKLLTK 24
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein
{Thermus thermophilus [TaxId: 274]}
Length = 80
Score = 24.1 bits (52), Expect = 2.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEM 38
+ L +RG L +I ++ + LP P+ EEM
Sbjct: 19 RLLSERGRLVQEIGRLQTELGLPHYDPKREEEM 51
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 24.5 bits (52), Expect = 2.5
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVVG 76
++L G GKT L K +A++ + G
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHITPTQG 49
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 24.5 bits (53), Expect = 2.5
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV 74
++P + L GP G+GK+ +A + N T ++
Sbjct: 37 LRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 24.6 bits (52), Expect = 2.6
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATF 71
+I+ G PG GKT +A++
Sbjct: 39 MIISGMPGIGKTTSVHCLAHELLGRS 64
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 24.4 bits (53), Expect = 2.7
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV 74
I K V L G G+GK+ +A + +
Sbjct: 38 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 72
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 24.6 bits (52), Expect = 2.7
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV 74
P + G G GKT ++ A A + + RV
Sbjct: 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRV 39
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 24.5 bits (53), Expect = 2.8
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75
I+ V +GP G GKT L K ++ ++
Sbjct: 24 IEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 24.2 bits (51), Expect = 2.8
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSAT 70
+++ G GKT + + T
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVT 27
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 24.4 bits (52), Expect = 2.9
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 50 GPPGTGKTLLAKAVANQTSATFLRV 74
G PG GK+ +A L+V
Sbjct: 61 GTPGAGKSTFLEAFGMLLIREGLKV 85
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 24.5 bits (53), Expect = 2.9
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV 74
IK + + + G G+GK+ L K + +V
Sbjct: 26 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 24.4 bits (53), Expect = 2.9
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 40 IKPPKGVILYGPPGTGKTLLAKAVA 64
+P + GP G GK+ + +
Sbjct: 25 AQPNSIIAFAGPSGGGKSTIFSLLE 49
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 24.3 bits (51), Expect = 3.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 46 VILYGPPGTGKTLLAKAVANQ 66
++ YGPPGTGKT A+A +
Sbjct: 38 LLFYGPPGTGKTSTIVALARE 58
>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus
thermophilus [TaxId: 274]}
Length = 318
Score = 24.5 bits (53), Expect = 3.3
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 47 ILYGPPGTGKTLLA 60
+ +G GTGKT L+
Sbjct: 18 VFFGLSGTGKTTLS 31
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 24.3 bits (51), Expect = 3.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATF 71
V + G P GK+ L A+ N+ A
Sbjct: 11 VAIVGRPNVGKSTLFNAILNKERALV 36
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 24.3 bits (52), Expect = 3.4
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
Query: 17 QIQEIKESVELPLTHPEYYEEMGIKP-PKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75
Q Q I + V+ G++ K L G GTGKT V Q + L +
Sbjct: 16 QPQAIAKLVD------------GLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIA 63
Query: 76 GSELIQKYL 84
++ + L
Sbjct: 64 HNKTLAGQL 72
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 24.3 bits (51), Expect = 3.4
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATF 71
V + G P GK+ L + A
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPI 33
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 24.2 bits (51), Expect = 3.6
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD 86
+++ G G GKT + + T +G + +
Sbjct: 20 ILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN 60
>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 413
Score = 24.3 bits (52), Expect = 3.8
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 8/47 (17%)
Query: 38 MGIKPPKGVILYGPPGT--------GKTLLAKAVANQTSATFLRVVG 76
+ K ++ GP G G L V TS + ++G
Sbjct: 322 EAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGCITIIG 368
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 23.8 bits (50), Expect = 4.2
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG 85
+I+ GP +GKT L + + + Y G
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDG 45
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 23.9 bits (50), Expect = 4.2
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSA 69
+ + G P GK+ L + Q +
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKIS 31
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 23.8 bits (50), Expect = 4.5
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 46 VILYGPPGTGKTLLAKAVANQTSAT 70
VI+ G GKT + +
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEVVH 42
>d2fp1a1 a.130.1.4 (A:35-199) Secreted chorismate mutase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 165
Score = 23.7 bits (51), Expect = 5.5
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEM 38
A +R + + K +LP+ E+
Sbjct: 10 DAAAERLEVADPVAAFKWRAQLPIEDSGRVEQQ 42
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein
{Escherichia coli [TaxId: 562]}
Length = 91
Score = 23.2 bits (50), Expect = 5.5
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEM 38
L +R L V++ + K P+ + ++
Sbjct: 19 ALLAERRELAVEVGKAKLLSHRPVRDIDRERDL 51
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 23.6 bits (50), Expect = 5.7
Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 VILYGPPGTGKT-LLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVAL 95
++L G G GKT +L + + ++TF+ +G + + + K +++ +
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 59
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 23.6 bits (51), Expect = 6.4
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 40 IKPPKGVILYGPPGTGKTLLAKAVA 64
I+ + V G G GK+ L +
Sbjct: 41 IEKGETVAFVGMSGGGKSTLINLIP 65
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
(RecD) {Escherichia coli [TaxId: 562]}
Length = 359
Score = 23.3 bits (49), Expect = 6.8
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 12/57 (21%)
Query: 6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKA 62
+ L K + +I K + + LT ++ G PGTGKT
Sbjct: 138 QTLDKLFPVSDEINWQKVAAAVALTRRI------------SVISGGPGTGKTTTVAK 182
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 23.0 bits (49), Expect = 8.5
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 50 GPPGTGKTLLAKAVAN 65
GP G GKT + +
Sbjct: 11 GPHGMGKTTTTQLLVA 26
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 23.3 bits (49), Expect = 8.8
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 33 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73
E ++M K ++ G GK+ L + T R
Sbjct: 14 ELLKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKR 54
>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima
[TaxId: 2336]}
Length = 398
Score = 23.1 bits (49), Expect = 9.4
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 28 PLTHPEYYEEMGIKPPKGVILYGPPG--------TGKTLLAKAVANQTSATFLRVVG 76
P T + + + K V+ GP G G +A A+A T + VVG
Sbjct: 297 PETIELF--KQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGAITVVG 351
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.136 0.388
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 380,848
Number of extensions: 16007
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 170
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.9 bits)