BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16323
(448 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|156375703|ref|XP_001630219.1| predicted protein [Nematostella vectensis]
gi|156217235|gb|EDO38156.1| predicted protein [Nematostella vectensis]
Length = 268
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/265 (40%), Positives = 122/265 (46%), Gaps = 15/265 (5%)
Query: 16 LPSTVTERPL--EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD------LPG 67
LP T R + + GPS LPGPS+ LPGP LPG + + + G
Sbjct: 3 LPGQCTRREVLTRYVMVGPSVYMVLPGPSAYMVLPGPLVCMVLPGQCTRREVLARYVMVG 62
Query: 68 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
PS LPG S LP PS LPG LPGPS LPGPS LPGP
Sbjct: 63 PSVYMVLPGASVCMVLPEPSVCMVLPGQEVCGMVLPGPSVCMVLPGPSVCMVLPGPLVCM 122
Query: 127 DLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
LPG + +PGP LPGPS L GPS LPGPS LPGP LP
Sbjct: 123 VLPGQCTRRGFVWMPGPLVCMVLPGPSVCMVLAGPSVCMVLPGPSVCMVLPGPLVCMVLP 182
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
G + ++ + + GPS LPG S LPGPS LPGPS LPGPS
Sbjct: 183 GQCTRREV---LTRYVVVGPSVYMVLPGASVCMVLPGPSVCMVLPGPSVCMVLPGPSVCM 239
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSS 268
LPGPS LPGP LPG +
Sbjct: 240 VLPGPSVCMVLPGPLVCMVLPGQCT 264
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 104/250 (41%), Positives = 117/250 (46%), Gaps = 13/250 (5%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD------LPGPSSAPDLPGPSSAPD 100
+ GPS LPGPS+ LPGP LPG + + + GPS LPG S
Sbjct: 18 MVGPSVYMVLPGPSAYMVLPGPLVCMVLPGQCTRREVLARYVMVGPSVYMVLPGASVCMV 77
Query: 101 LPGPSSAPDLPGPSSA-PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LP 156
LP PS LPG LPGPS LPGPS LPGP LPG + +P
Sbjct: 78 LPEPSVCMVLPGQEVCGMVLPGPSVCMVLPGPSVCMVLPGPLVCMVLPGQCTRRGFVWMP 137
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
GP LPGPS L GPS LPGPS LPGP LPG + ++ +
Sbjct: 138 GPLVCMVLPGPSVCMVLAGPSVCMVLPGPSVCMVLPGPLVCMVLPGQCTRREV---LTRY 194
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 276
+ GPS LPG S LPGPS LPGPS LPGPS LPGPS LPGP
Sbjct: 195 VVVGPSVYMVLPGASVCMVLPGPSVCMVLPGPSVCMVLPGPSVCMVLPGPSVCMVLPGPL 254
Query: 277 SAPDLPGPSS 286
LPG +
Sbjct: 255 VCMVLPGQCT 264
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 104/250 (41%), Positives = 117/250 (46%), Gaps = 13/250 (5%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD------LPGPSSAPDLPGPSSAPD 109
+ GPS LPGPS+ LPGP LPG + + + GPS LPG S
Sbjct: 18 MVGPSVYMVLPGPSAYMVLPGPLVCMVLPGQCTRREVLARYVMVGPSVYMVLPGASVCMV 77
Query: 110 LPGPSSAPDLPGPSSA-PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LP 165
LP PS LPG LPGPS LPGPS LPGP LPG + +P
Sbjct: 78 LPEPSVCMVLPGQEVCGMVLPGPSVCMVLPGPSVCMVLPGPLVCMVLPGQCTRRGFVWMP 137
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
GP LPGPS L GPS LPGPS LPGP LPG + ++ +
Sbjct: 138 GPLVCMVLPGPSVCMVLAGPSVCMVLPGPSVCMVLPGPLVCMVLPGQCTRREV---LTRY 194
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
+ GPS LPG S LPGPS LPGPS LPGPS LPGPS LPGP
Sbjct: 195 VVVGPSVYMVLPGASVCMVLPGPSVCMVLPGPSVCMVLPGPSVCMVLPGPSVCMVLPGPL 254
Query: 286 SAPDLPGPSS 295
LPG +
Sbjct: 255 VCMVLPGQCT 264
>gi|61652784|gb|AAX47962.1| circumsporozoite protein [Plasmodium vivax]
Length = 405
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 128/235 (54%), Gaps = 1/235 (0%)
Query: 22 ERPLEPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
+ P E L P A + PG + A + PG + A + PG + A D PG + A + PG + A
Sbjct: 59 KNPRENKLKQPEDGAGNQPGANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGA 118
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
+ PG + A + PG + A + PG + A D PG + A + PG + A + PG + A + PG
Sbjct: 119 GNQPGANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGA 178
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A +
Sbjct: 179 NGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQ 238
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 239 PGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 293
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 123/222 (55%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
A + PG + A + PG + A + PG + A D PG + A + PG + A + PG + A + P
Sbjct: 72 GAGNQPGANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQP 131
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
G + A + PG + A D PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 132 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAD 191
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 222
D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG +
Sbjct: 192 DQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGAN 251
Query: 223 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 252 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 293
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 123/222 (55%)
Query: 52 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 111
A + PG + A + PG + A + PG + A D PG + A + PG + A + PG + A + P
Sbjct: 72 GAGNQPGANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQP 131
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
G + A + PG + A D PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 132 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAD 191
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG +
Sbjct: 192 DQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGAN 251
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 273
A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 252 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 293
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 123/222 (55%)
Query: 61 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
A + PG + A + PG + A + PG + A D PG + A + PG + A + PG + A + P
Sbjct: 72 GAGNQPGANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQP 131
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
G + A + PG + A D PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 132 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAD 191
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG +
Sbjct: 192 DQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGAN 251
Query: 241 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 252 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 293
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 123/222 (55%)
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
A + PG + A + PG + A + PG + A D PG + A + PG + A + PG + A + P
Sbjct: 72 GAGNQPGANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQP 131
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
G + A + PG + A D PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 132 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAD 191
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG +
Sbjct: 192 DQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGAN 251
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 252 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 293
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 115/208 (55%)
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
A + PG + A + PG + A + PG + A D PG + A + PG + A + PG + A + P
Sbjct: 72 GAGNQPGANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQP 131
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
G + A + PG + A D PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 132 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAD 191
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG +
Sbjct: 192 DQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGAN 251
Query: 268 SAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
A + PG + A + PG + A + PG +
Sbjct: 252 GAGNQPGANGAGNQPGANGAGNQPGANG 279
>gi|326677446|ref|XP_002661995.2| PREDICTED: hypothetical protein LOC100334539 [Danio rerio]
Length = 1720
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 118/282 (41%), Gaps = 7/282 (2%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EPD P+ PD P+ P P+ PD P PD P+ PD P+ PD
Sbjct: 1097 EPDQDNPTEEPDQTIPAEEPAQNNPTEKPDQDNPGKKPDQDNPTEEPDQNNPTEEPDHNN 1156
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-------PSSAPDLPGPSSAPDLP 138
P+ PD P+ PD P+ PD P+ PD P+ PD P+ PD
Sbjct: 1157 PAEKPDQDNPTEKPDHNNPAEKPDQDNPTEKPDHNNTEPDQTIPAEEPDQTNPTEKPDQD 1216
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
P+ PD P+ PD P+ PD P PD P+ PD P+ PD P+ P
Sbjct: 1217 NPTEEPDQDNPTEEPDQTIPAEEPDQNNPGKKPDQDNPTEKPDQNNPAEKPDQNNPAMEP 1276
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
D P+ + P+ PD P+ PD P+ PD P+ PD P+ PD P+
Sbjct: 1277 DQDNPTEKLEQNNPAEKPDQDNPAMEPDKNNPAEKPDQNNPAEKPDQNNPAEKPDQNNPT 1336
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGS 300
+ P+ PD P+ PD P+ PD P+ V S
Sbjct: 1337 EKLEQNKPTEKPDQDNPTEEPDQNNPAEKPDQNNPAERVENS 1378
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 115/277 (41%), Gaps = 7/277 (2%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EPD P+ PD P+ PD P+ PD P+ P P+ PD P+ PD
Sbjct: 980 EPDQTIPAEEPDQNKPTEKPDQNNPTKYPDQNNPTEKPAQNNPAEKPDQNNPTDKPDQNK 1039
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P+ P P+ PD P+ PD P+ P P+ PD P+ PD P+ PD
Sbjct: 1040 PTEKPAQNNPAEKPDQNNPTEYPDQNNPTEEPAQNNPAEKPDQNNPTEKPDQGNPTEEPD 1099
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
P+ PD P+ P P+ PD P PD P+ PD P+ PD P+
Sbjct: 1100 QDNPTEEPDQTIPAEEPAQNNPTEKPDQDNPGKKPDQDNPTEEPDQNNPTEEPDHNNPAE 1159
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-------PSSAPDLPGPSSAPDLPGPS 258
PD P+ PD P+ PD P+ PD P+ PD P+ PD P+
Sbjct: 1160 KPDQDNPTEKPDHNNPAEKPDQDNPTEKPDHNNTEPDQTIPAEEPDQTNPTEKPDQDNPT 1219
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
PD P+ PD P+ PD P PD P+
Sbjct: 1220 EEPDQDNPTEEPDQTIPAEEPDQNNPGKKPDQDNPTE 1256
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 120/277 (43%), Gaps = 5/277 (1%)
Query: 21 TERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
TE+P + + P+ PD P+ PD P+ P P+ PD P+ PD P+
Sbjct: 1014 TEKPAQNN---PAEKPDQNNPTDKPDQNKPTEKPAQNNPAEKPDQNNPTEYPDQNNPTEE 1070
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
P P+ PD P+ PD P+ PD P+ PD P+ P P+ PD P
Sbjct: 1071 PAQNNPAEKPDQNNPTEKPDQGNPTEEPDQDNPTEEPDQTIPAEEPAQNNPTEKPDQDNP 1130
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
PD P+ PD P+ PD P+ PD P+ PD P+ PD P+ PD
Sbjct: 1131 GKKPDQDNPTEEPDQNNPTEEPDHNNPAEKPDQDNPTEKPDHNNPAEKPDQDNPTEKPD- 1189
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
++ PD P+ PD P+ PD P+ PD P+ PD P+ PD P
Sbjct: 1190 -HNNTEPDQTIPAEEPDQTNPTEKPDQDNPTEEPDQDNPTEEPDQTIPAEEPDQNNPGKK 1248
Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
PD P+ PD P+ PD P+ PD P+ +
Sbjct: 1249 PDQDNPTEKPDQNNPAEKPDQNNPAMEPDQDNPTEKL 1285
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 116/277 (41%), Gaps = 7/277 (2%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+PD P+ PD P+ PD P+ PD P+ P P+ PD P PD
Sbjct: 1079 KPDQNNPTEKPDQGNPTEEPDQDNPTEEPDQTIPAEEPAQNNPTEKPDQDNPGKKPDQDN 1138
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------ 139
P+ PD P+ PD P+ PD P+ PD P+ PD P+ PD
Sbjct: 1139 PTEEPDQNNPTEEPDHNNPAEKPDQDNPTEKPDHNNPAEKPDQDNPTEKPDHNNTEPDQT 1198
Query: 140 -PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
P+ PD P+ PD P+ PD P+ PD P+ PD P PD P+ P
Sbjct: 1199 IPAEEPDQTNPTEKPDQDNPTEEPDQDNPTEEPDQTIPAEEPDQNNPGKKPDQDNPTEKP 1258
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
D P+ PD P+ PD P+ + P+ PD P+ PD P+ PD P+
Sbjct: 1259 DQNNPAEKPDQNNPAMEPDQDNPTEKLEQNNPAEKPDQDNPAMEPDKNNPAEKPDQNNPA 1318
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
PD P+ PD P+ + P+ PD P+
Sbjct: 1319 EKPDQNNPAEKPDQNNPTEKLEQNKPTEKPDQDNPTE 1355
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 115/275 (41%), Gaps = 7/275 (2%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+PD P+ PD P+ PD P+ PD P+ PD P+ P P+ PD
Sbjct: 971 KPDQNNPAEEPDQTIPAEEPDQNKPTEKPDQNNPTKYPDQNNPTEKPAQNNPAEKPDQNN 1030
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P+ PD P+ P P+ PD P+ PD P+ P P+ PD P+ PD
Sbjct: 1031 PTDKPDQNKPTEKPAQNNPAEKPDQNNPTEYPDQNNPTEEPAQNNPAEKPDQNNPTEKPD 1090
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
P+ PD P+ PD P+ P P+ PD P PD P+ PD P+
Sbjct: 1091 QGNPTEEPDQDNPTEEPDQTIPAEEPAQNNPTEKPDQDNPGKKPDQDNPTEEPDQNNPTE 1150
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-------PSSAPDLPGPS 258
PD P+ PD P+ PD P+ PD P+ PD P+ PD P+
Sbjct: 1151 EPDHNNPAEKPDQDNPTEKPDHNNPAEKPDQDNPTEKPDHNNTEPDQTIPAEEPDQTNPT 1210
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
PD P+ PD P+ PD P+ PD P
Sbjct: 1211 EKPDQDNPTEEPDQDNPTEEPDQTIPAEEPDQNNP 1245
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 114/267 (42%), Gaps = 2/267 (0%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
L P+ PD P+ PD P+ PD P+ PD P+ PD P+ P P+
Sbjct: 965 LINPAEKPDQNNPAEEPDQTIPAEEPDQNKPTEKPDQNNPTKYPDQNNPTEKPAQNNPAE 1024
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
PD P+ PD P+ P P+ PD P+ PD P+ P P+ PD
Sbjct: 1025 KPDQNNPTDKPDQNKPTEKPAQNNPAEKPDQNNPTEYPDQNNPTEEPAQNNPAEKPDQNN 1084
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
P+ PD P+ PD P+ PD P+ P P+ PD P PD P+ PD
Sbjct: 1085 PTEKPDQGNPTEEPDQDNPTEEPDQTIPAEEPAQNNPTEKPDQDNPGKKPDQDNPTEEPD 1144
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
P+ PD P+ PD P+ PD P+ PD P+ PD ++ PD P+
Sbjct: 1145 QNNPTEEPDHNNPAEKPDQDNPTEKPDHNNPAEKPDQDNPTEKPD--HNNTEPDQTIPAE 1202
Query: 269 APDLPGPSSAPDLPGPSSAPDLPGPSS 295
PD P+ PD P+ PD P+
Sbjct: 1203 EPDQTNPTEKPDQDNPTEEPDQDNPTE 1229
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 109/258 (42%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 91
PS+ P P+ AP +S LPG L P+ PD P+ PD P+ PD
Sbjct: 932 PSAESQSPAPTGAPQGSVTASTLILPGGYKLIKLINPAEKPDQNNPAEEPDQTIPAEEPD 991
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
P+ PD P+ PD P+ P P+ PD P+ PD P+ P P+
Sbjct: 992 QNKPTEKPDQNNPTKYPDQNNPTEKPAQNNPAEKPDQNNPTDKPDQNKPTEKPAQNNPAE 1051
Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
PD P+ PD P+ P P+ PD P+ PD P+ PD P+ PD
Sbjct: 1052 KPDQNNPTEYPDQNNPTEEPAQNNPAEKPDQNNPTEKPDQGNPTEEPDQDNPTEEPDQTI 1111
Query: 212 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 271
P+ P P+ PD P PD P+ PD P+ PD P+ PD P+ PD
Sbjct: 1112 PAEEPAQNNPTEKPDQDNPGKKPDQDNPTEEPDQNNPTEEPDHNNPAEKPDQDNPTEKPD 1171
Query: 272 LPGPSSAPDLPGPSSAPD 289
P+ PD P+ PD
Sbjct: 1172 HNNPAEKPDQDNPTEKPD 1189
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 107/255 (41%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E P P+ AP +S LPG L P+ PD P+ PD P+ PD
Sbjct: 935 ESQSPAPTGAPQGSVTASTLILPGGYKLIKLINPAEKPDQNNPAEEPDQTIPAEEPDQNK 994
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P+ PD P+ PD P+ P P+ PD P+ PD P+ P P+ PD
Sbjct: 995 PTEKPDQNNPTKYPDQNNPTEKPAQNNPAEKPDQNNPTDKPDQNKPTEKPAQNNPAEKPD 1054
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
P+ PD P+ P P+ PD P+ PD P+ PD P+ PD P+
Sbjct: 1055 QNNPTEYPDQNNPTEEPAQNNPAEKPDQNNPTEKPDQGNPTEEPDQDNPTEEPDQTIPAE 1114
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
P P+ PD P PD P+ PD P+ PD P+ PD P+ PD
Sbjct: 1115 EPAQNNPTEKPDQDNPGKKPDQDNPTEEPDQNNPTEEPDHNNPAEKPDQDNPTEKPDHNN 1174
Query: 266 PSSAPDLPGPSSAPD 280
P+ PD P+ PD
Sbjct: 1175 PAEKPDQDNPTEKPD 1189
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 107/255 (41%)
Query: 41 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 100
PS+ P P+ AP +S LPG L P+ PD P+ PD P+ PD
Sbjct: 932 PSAESQSPAPTGAPQGSVTASTLILPGGYKLIKLINPAEKPDQNNPAEEPDQTIPAEEPD 991
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
P+ PD P+ PD P+ P P+ PD P+ PD P+ P P+
Sbjct: 992 QNKPTEKPDQNNPTKYPDQNNPTEKPAQNNPAEKPDQNNPTDKPDQNKPTEKPAQNNPAE 1051
Query: 161 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
PD P+ PD P+ P P+ PD P+ PD P+ PD P+ PD
Sbjct: 1052 KPDQNNPTEYPDQNNPTEEPAQNNPAEKPDQNNPTEKPDQGNPTEEPDQDNPTEEPDQTI 1111
Query: 221 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 280
P+ P P+ PD P PD P+ PD P+ PD P+ PD P+ PD
Sbjct: 1112 PAEEPAQNNPTEKPDQDNPGKKPDQDNPTEEPDQNNPTEEPDHNNPAEKPDQDNPTEKPD 1171
Query: 281 LPGPSSAPDLPGPSS 295
P+ PD P+
Sbjct: 1172 HNNPAEKPDQDNPTE 1186
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 44/100 (44%)
Query: 25 LEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 84
+EPD P+ + P+ PD P+ PD P+ PD P+ PD P+ PD
Sbjct: 1274 MEPDQDNPTEKLEQNNPAEKPDQDNPAMEPDKNNPAEKPDQNNPAEKPDQNNPAEKPDQN 1333
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
P+ + P+ PD P+ PD P+ PD P+
Sbjct: 1334 NPTEKLEQNKPTEKPDQDNPTEEPDQNNPAEKPDQNNPAE 1373
>gi|396480997|ref|XP_003841132.1| predicted protein [Leptosphaeria maculans JN3]
gi|312217706|emb|CBX97653.1| predicted protein [Leptosphaeria maculans JN3]
Length = 513
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/232 (39%), Positives = 100/232 (43%), Gaps = 7/232 (3%)
Query: 25 LEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 84
++ + P S PD P S PD P S PD P S PD P S PD P S PD P
Sbjct: 24 VQSEYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYP 83
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
S PD P S PD P S PD P S PD P S PD P S PD P S P
Sbjct: 84 ASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVP 143
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
D P S PD P S PD P S PD P S PD P S PD P S P+ P S
Sbjct: 144 DYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPEYPASS 203
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
P P S P P P PSS LP + P P P+ + + P
Sbjct: 204 HVPQYPASSKTPGHPA------YPTPSSK-SLPHGTGYPHQPHPTKSVEYPH 248
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 98/229 (42%), Gaps = 7/229 (3%)
Query: 64 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 123
+ P S PD P S PD P S PD P S PD P S PD P S PD P S
Sbjct: 27 EYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASS 86
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
PD P S PD P S PD P S PD P S PD P S PD P S PD P
Sbjct: 87 HVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYP 146
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
S PD P S PD P S PD P S PD P S PD P S P+ P S P
Sbjct: 147 ASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPEYPASSHVP 206
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P S P P P PSS LP + P P P+ + + P
Sbjct: 207 QYPASSKTPGHPA------YPTPSSK-SLPHGTGYPHQPHPTKSVEYPH 248
>gi|350633524|gb|EHA21889.1| hypothetical protein ASPNIDRAFT_183966 [Aspergillus niger ATCC
1015]
Length = 166
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 110/164 (67%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+
Sbjct: 1 PGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTV 60
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG
Sbjct: 61 PGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQ 120
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
S+ P +PG S+ P +PG S+ P +PG +S P +PG S+ P +PG
Sbjct: 121 STVPGVPGQSTVPGVPGQSTVPGVPGETSVPAVPGESTVPAVPG 164
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 110/164 (67%)
Query: 39 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 98
PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+
Sbjct: 1 PGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTV 60
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 158
P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG
Sbjct: 61 PGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQ 120
Query: 159 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
S+ P +PG S+ P +PG S+ P +PG +S P +PG S+ P +PG
Sbjct: 121 STVPGVPGQSTVPGVPGQSTVPGVPGETSVPAVPGESTVPAVPG 164
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 110/164 (67%)
Query: 48 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 107
PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+
Sbjct: 1 PGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTV 60
Query: 108 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 167
P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG
Sbjct: 61 PGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQ 120
Query: 168 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
S+ P +PG S+ P +PG S+ P +PG +S P +PG S+ P +PG
Sbjct: 121 STVPGVPGQSTVPGVPGQSTVPGVPGETSVPAVPGESTVPAVPG 164
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 110/164 (67%)
Query: 57 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 116
PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+
Sbjct: 1 PGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTV 60
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG
Sbjct: 61 PGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQ 120
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
S+ P +PG S+ P +PG S+ P +PG +S P +PG S+ P +PG
Sbjct: 121 STVPGVPGQSTVPGVPGQSTVPGVPGETSVPAVPGESTVPAVPG 164
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 110/164 (67%)
Query: 66 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+
Sbjct: 1 PGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTV 60
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG
Sbjct: 61 PGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQ 120
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
S+ P +PG S+ P +PG S+ P +PG +S P +PG S+ P +PG
Sbjct: 121 STVPGVPGQSTVPGVPGQSTVPGVPGETSVPAVPGESTVPAVPG 164
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 110/164 (67%)
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+
Sbjct: 1 PGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTV 60
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG
Sbjct: 61 PGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQ 120
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
S+ P +PG S+ P +PG S+ P +PG +S P +PG S+ P +PG
Sbjct: 121 STVPGVPGQSTVPGVPGQSTVPGVPGETSVPAVPGESTVPAVPG 164
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 110/164 (67%)
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+
Sbjct: 1 PGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTV 60
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG
Sbjct: 61 PGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQ 120
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
S+ P +PG S+ P +PG S+ P +PG +S P +PG S+ P +PG
Sbjct: 121 STVPGVPGQSTVPGVPGQSTVPGVPGETSVPAVPGESTVPAVPG 164
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 110/164 (67%)
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+
Sbjct: 1 PGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTV 60
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG
Sbjct: 61 PGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQ 120
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
S+ P +PG S+ P +PG S+ P +PG +S P +PG S+ P +PG
Sbjct: 121 STVPGVPGQSTVPGVPGQSTVPGVPGETSVPAVPGESTVPAVPG 164
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 110/164 (67%)
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+
Sbjct: 1 PGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTV 60
Query: 162 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 221
P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG
Sbjct: 61 PGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQ 120
Query: 222 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
S+ P +PG S+ P +PG S+ P +PG +S P +PG S+ P +PG
Sbjct: 121 STVPGVPGQSTVPGVPGQSTVPGVPGETSVPAVPGESTVPAVPG 164
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 110/164 (67%)
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+
Sbjct: 1 PGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTV 60
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG
Sbjct: 61 PGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQ 120
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
S+ P +PG S+ P +PG S+ P +PG +S P +PG S+ P +PG
Sbjct: 121 STVPGVPGQSTVPGVPGQSTVPGVPGETSVPAVPGESTVPAVPG 164
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 110/164 (67%)
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+
Sbjct: 1 PGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTV 60
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG
Sbjct: 61 PGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQ 120
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
S+ P +PG S+ P +PG S+ P +PG +S P +PG S+ P +PG
Sbjct: 121 STVPGVPGQSTVPGVPGQSTVPGVPGETSVPAVPGESTVPAVPG 164
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 110/164 (67%)
Query: 129 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+
Sbjct: 1 PGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTV 60
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG
Sbjct: 61 PGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQ 120
Query: 249 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
S+ P +PG S+ P +PG S+ P +PG +S P +PG S+ P +PG
Sbjct: 121 STVPGVPGQSTVPGVPGQSTVPGVPGETSVPAVPGESTVPAVPG 164
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 106/158 (67%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG
Sbjct: 7 PAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTVPGVPGQ 66
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +
Sbjct: 67 STVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQSTVPGV 126
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
PG S+ P +PG S+ P +PG +S P +PG S+ P +PG
Sbjct: 127 PGQSTVPGVPGQSTVPGVPGETSVPAVPGESTVPAVPG 164
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 106/158 (67%)
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+
Sbjct: 1 PGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTV 60
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG
Sbjct: 61 PGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQ 120
Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
S+ P +PG S+ P +PG S+ P +PG +S P +PG S+
Sbjct: 121 STVPGVPGQSTVPGVPGQSTVPGVPGETSVPAVPGEST 158
>gi|260796019|ref|XP_002593002.1| hypothetical protein BRAFLDRAFT_117784 [Branchiostoma floridae]
gi|229278226|gb|EEN49013.1| hypothetical protein BRAFLDRAFT_117784 [Branchiostoma floridae]
Length = 1602
Score = 122 bits (305), Expect = 4e-25, Method: Composition-based stats.
Identities = 74/248 (29%), Positives = 120/248 (48%), Gaps = 11/248 (4%)
Query: 33 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 92
S A P P++ P P++ D P P++ D P P++ D P P++ D P P++ D
Sbjct: 35 SEAAYKPAPTAPTGKPAPTAPVDKPAPTAPTDKPAPTAPTDKPAPTAPTDKPAPTAPTDK 94
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
P P++ D P P++ D P P++ D P P++ D P P++ D P P++ D P P++
Sbjct: 95 PAPTAPVDKPAPTAPTDKPAPTAPTDKPAPTAPTDKPAPTAPTDKPEPTAPADKPAPTAP 154
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
D P P++ D P P++ P P++ D P P++ D P P++ PS+ D P P
Sbjct: 155 TDKPAPTAPTDTPAPTAPASTPLPAAPVDKPAPTAPTDKPAPTA------PSAPKDSPAP 208
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
P P++ P P + P P + P+ ++ P P + P P A D
Sbjct: 209 EPTPT--KPTAEPVTTKPKTEPATTKPKAGPETAKSTAEPAPAKPKAG---PAPEKAKDE 263
Query: 273 PGPSSAPD 280
GP+ D
Sbjct: 264 AGPAKPDD 271
Score = 122 bits (305), Expect = 4e-25, Method: Composition-based stats.
Identities = 74/248 (29%), Positives = 120/248 (48%), Gaps = 11/248 (4%)
Query: 42 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 101
S A P P++ P P++ D P P++ D P P++ D P P++ D P P++ D
Sbjct: 35 SEAAYKPAPTAPTGKPAPTAPVDKPAPTAPTDKPAPTAPTDKPAPTAPTDKPAPTAPTDK 94
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
P P++ D P P++ D P P++ D P P++ D P P++ D P P++ D P P++
Sbjct: 95 PAPTAPVDKPAPTAPTDKPAPTAPTDKPAPTAPTDKPAPTAPTDKPEPTAPADKPAPTAP 154
Query: 162 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 221
D P P++ D P P++ P P++ D P P++ D P P++ PS+ D P P
Sbjct: 155 TDKPAPTAPTDTPAPTAPASTPLPAAPVDKPAPTAPTDKPAPTA------PSAPKDSPAP 208
Query: 222 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
P P++ P P + P P + P+ ++ P P + P P A D
Sbjct: 209 EPTPT--KPTAEPVTTKPKTEPATTKPKAGPETAKSTAEPAPAKPKAG---PAPEKAKDE 263
Query: 282 PGPSSAPD 289
GP+ D
Sbjct: 264 AGPAKPDD 271
Score = 121 bits (304), Expect = 6e-25, Method: Composition-based stats.
Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 11/242 (4%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
P P++ P P++ D P P++ D P P++ D P P++ D P P++ D P P++
Sbjct: 41 PAPTAPTGKPAPTAPVDKPAPTAPTDKPAPTAPTDKPAPTAPTDKPAPTAPTDKPAPTAP 100
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
D P P++ D P P++ D P P++ D P P++ D P P++ D P P++ D P P
Sbjct: 101 VDKPAPTAPTDKPAPTAPTDKPAPTAPTDKPAPTAPTDKPEPTAPADKPAPTAPTDKPAP 160
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
++ D P P++ P P++ D P P++ D P P++ PS+ D P P P
Sbjct: 161 TAPTDTPAPTAPASTPLPAAPVDKPAPTAPTDKPAPTA------PSAPKDSPAPEPTPT- 213
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
P++ P P + P P + P+ ++ P P + P P A D GP+
Sbjct: 214 -KPTAEPVTTKPKTEPATTKPKAGPETAKSTAEPAPAKPKAG---PAPEKAKDEAGPAKP 269
Query: 270 PD 271
D
Sbjct: 270 DD 271
Score = 120 bits (301), Expect = 2e-24, Method: Composition-based stats.
Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 14/241 (5%)
Query: 60 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 119
S A P P++ P P++ D P P++ D P P++ D P P++ D P P++ D
Sbjct: 35 SEAAYKPAPTAPTGKPAPTAPVDKPAPTAPTDKPAPTAPTDKPAPTAPTDKPAPTAPTDK 94
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
P P++ D P P++ D P P++ D P P++ D P P++ D P P++ D P P++
Sbjct: 95 PAPTAPVDKPAPTAPTDKPAPTAPTDKPAPTAPTDKPAPTAPTDKPEPTAPADKPAPTAP 154
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
D P P++ D P P++ P P++ D P P++ D P P++ PS+ D P P
Sbjct: 155 TDKPAPTAPTDTPAPTAPASTPLPAAPVDKPAPTAPTDKPAPTA------PSAPKDSPAP 208
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------PGPSSAPDLPGPSSAPDLPGP 293
P P++ P P + P P + P+ P P+ P P A D GP
Sbjct: 209 EPTPT--KPTAEPVTTKPKTEPATTKPKAGPETAKSTAEPAPAKPKAGPAPEKAKDEAGP 266
Query: 294 S 294
+
Sbjct: 267 A 267
Score = 112 bits (280), Expect = 4e-22, Method: Composition-based stats.
Identities = 70/234 (29%), Positives = 114/234 (48%), Gaps = 18/234 (7%)
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
S A P P++ P P++ D P P++ D P P++ D P P++ D P P++ D
Sbjct: 35 SEAAYKPAPTAPTGKPAPTAPVDKPAPTAPTDKPAPTAPTDKPAPTAPTDKPAPTAPTDK 94
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
P P++ D P P++ D P P++ D P P++ D P P++ D P P++ D P P++
Sbjct: 95 PAPTAPVDKPAPTAPTDKPAPTAPTDKPAPTAPTDKPAPTAPTDKPEPTAPADKPAPTAP 154
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
D P P++ D P P++ P P++ D P P++ D P P++ PS+ D P P
Sbjct: 155 TDKPAPTAPTDTPAPTAPASTPLPAAPVDKPAPTAPTDKPAPTA------PSAPKDSPAP 208
Query: 267 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPAQ 320
P P++ P P + P P +AG + + EP PA+
Sbjct: 209 EPTPT--KPTAEPVTTKPKTEPATTKP----------KAGPETAKSTAEPAPAK 250
Score = 105 bits (263), Expect = 4e-20, Method: Composition-based stats.
Identities = 64/211 (30%), Positives = 102/211 (48%), Gaps = 8/211 (3%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D P P++ D P P++ D P P++ D P P++ D P P++ D P P++ D P P+
Sbjct: 66 DKPAPTAPTDKPAPTAPTDKPAPTAPTDKPAPTAPVDKPAPTAPTDKPAPTAPTDKPAPT 125
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
+ D P P++ D P P++ D P P++ D P P++ D P P++ P P++ D P
Sbjct: 126 APTDKPAPTAPTDKPEPTAPADKPAPTAPTDKPAPTAPTDTPAPTAPASTPLPAAPVDKP 185
Query: 148 GPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
P++ D P P S+ D P P P P++ P P + P P + P+ +
Sbjct: 186 APTAPTDKPAPTAPSAPKDSPAPEPTPT--KPTAEPVTTKPKTEPATTKPKAGPETAKST 243
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 235
+ P P + P P A D GP+ D
Sbjct: 244 AEPAPAKPKAG---PAPEKAKDEAGPAKPDD 271
Score = 100 bits (248), Expect = 2e-18, Method: Composition-based stats.
Identities = 64/216 (29%), Positives = 103/216 (47%), Gaps = 11/216 (5%)
Query: 17 PSTVTERPLEP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 73
P+ T++P D P P++ D P P++ D P P++ D P P++ D P P++ D
Sbjct: 61 PTAPTDKPAPTAPTDKPAPTAPTDKPAPTAPTDKPAPTAPVDKPAPTAPTDKPAPTAPTD 120
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
P P++ D P P++ D P P++ D P P++ D P P++ D P P++ P P++
Sbjct: 121 KPAPTAPTDKPAPTAPTDKPEPTAPADKPAPTAPTDKPAPTAPTDTPAPTAPASTPLPAA 180
Query: 134 APDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
D P P++ D P P S+ D P P P P++ P P + P P + P+
Sbjct: 181 PVDKPAPTAPTDKPAPTAPSAPKDSPAPEPTPT--KPTAEPVTTKPKTEPATTKPKAGPE 238
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 226
++ P P + P P A D GP+ D
Sbjct: 239 TAKSTAEPAPAKPKAG---PAPEKAKDEAGPAKPDD 271
>gi|328701310|ref|XP_001950899.2| PREDICTED: hypothetical protein LOC100165925 [Acyrthosiphon pisum]
Length = 869
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 108/154 (70%), Gaps = 5/154 (3%)
Query: 15 YLPSTVTE--RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 72
Y T+ E RP + GP+ + +LPGPSS+ +PGPS + +LPGPSS+ +LPGPSS+
Sbjct: 154 YTNLTLNEIYRPPHSIILGPTPSTNLPGPSSSTSIPGPSGSINLPGPSSSINLPGPSSSN 213
Query: 73 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
+P PS + +LPGPSS+ +LPGPSS+ +PGPS + +L G + +LPGP+S+ +LPGPS
Sbjct: 214 SIPDPSGSINLPGPSSSINLPGPSSSTSIPGPSCSTNLSG---SINLPGPTSSINLPGPS 270
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
S+ + GPS + +LPGPSS+ +PGPS + G
Sbjct: 271 SSTSIAGPSGSINLPGPSSSTSIPGPSCSTGFSG 304
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 102/138 (73%), Gaps = 3/138 (2%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
+ GP+ + +LPGPSS+ +PGPS + +LPGPSS+ +LPGPSS+ +P PS + +LPGPSS
Sbjct: 170 ILGPTPSTNLPGPSSSTSIPGPSGSINLPGPSSSINLPGPSSSNSIPDPSGSINLPGPSS 229
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
+ +LPGPSS+ +PGPS + +L G + +LPGP+S+ +LPGPSS+ + GPS + +LPG
Sbjct: 230 SINLPGPSSSTSIPGPSCSTNLSG---SINLPGPTSSINLPGPSSSTSIAGPSGSINLPG 286
Query: 167 PSSAPDLPGPSSAPDLPG 184
PSS+ +PGPS + G
Sbjct: 287 PSSSTSIPGPSCSTGFSG 304
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 102/138 (73%), Gaps = 3/138 (2%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
+ GP+ + +LPGPSS+ +PGPS + +LPGPSS+ +LPGPSS+ +P PS + +LPGPSS
Sbjct: 170 ILGPTPSTNLPGPSSSTSIPGPSGSINLPGPSSSINLPGPSSSNSIPDPSGSINLPGPSS 229
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
+ +LPGPSS+ +PGPS + +L G + +LPGP+S+ +LPGPSS+ + GPS + +LPG
Sbjct: 230 SINLPGPSSSTSIPGPSCSTNLSG---SINLPGPTSSINLPGPSSSTSIAGPSGSINLPG 286
Query: 185 PSSAPDLPGPSSAPDLPG 202
PSS+ +PGPS + G
Sbjct: 287 PSSSTSIPGPSCSTGFSG 304
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 102/138 (73%), Gaps = 3/138 (2%)
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
+ GP+ + +LPGPSS+ +PGPS + +LPGPSS+ +LPGPSS+ +P PS + +LPGPSS
Sbjct: 170 ILGPTPSTNLPGPSSSTSIPGPSGSINLPGPSSSINLPGPSSSNSIPDPSGSINLPGPSS 229
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+ +LPGPSS+ +PGPS + +L G + +LPGP+S+ +LPGPSS+ + GPS + +LPG
Sbjct: 230 SINLPGPSSSTSIPGPSCSTNLSG---SINLPGPTSSINLPGPSSSTSIAGPSGSINLPG 286
Query: 203 PSSAPDLPGPSSAPDLPG 220
PSS+ +PGPS + G
Sbjct: 287 PSSSTSIPGPSCSTGFSG 304
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 102/138 (73%), Gaps = 3/138 (2%)
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
+ GP+ + +LPGPSS+ +PGPS + +LPGPSS+ +LPGPSS+ +P PS + +LPGPSS
Sbjct: 170 ILGPTPSTNLPGPSSSTSIPGPSGSINLPGPSSSINLPGPSSSNSIPDPSGSINLPGPSS 229
Query: 161 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
+ +LPGPSS+ +PGPS + +L G + +LPGP+S+ +LPGPSS+ + GPS + +LPG
Sbjct: 230 SINLPGPSSSTSIPGPSCSTNLSG---SINLPGPTSSINLPGPSSSTSIAGPSGSINLPG 286
Query: 221 PSSAPDLPGPSSAPDLPG 238
PSS+ +PGPS + G
Sbjct: 287 PSSSTSIPGPSCSTGFSG 304
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 102/138 (73%), Gaps = 3/138 (2%)
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
+ GP+ + +LPGPSS+ +PGPS + +LPGPSS+ +LPGPSS+ +P PS + +LPGPSS
Sbjct: 170 ILGPTPSTNLPGPSSSTSIPGPSGSINLPGPSSSINLPGPSSSNSIPDPSGSINLPGPSS 229
Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
+ +LPGPSS+ +PGPS + +L G + +LPGP+S+ +LPGPSS+ + GPS + +LPG
Sbjct: 230 SINLPGPSSSTSIPGPSCSTNLSG---SINLPGPTSSINLPGPSSSTSIAGPSGSINLPG 286
Query: 239 PSSAPDLPGPSSAPDLPG 256
PSS+ +PGPS + G
Sbjct: 287 PSSSTSIPGPSCSTGFSG 304
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 102/138 (73%), Gaps = 3/138 (2%)
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
+ GP+ + +LPGPSS+ +PGPS + +LPGPSS+ +LPGPSS+ +P PS + +LPGPSS
Sbjct: 170 ILGPTPSTNLPGPSSSTSIPGPSGSINLPGPSSSINLPGPSSSNSIPDPSGSINLPGPSS 229
Query: 197 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ +LPGPSS+ +PGPS + +L G + +LPGP+S+ +LPGPSS+ + GPS + +LPG
Sbjct: 230 SINLPGPSSSTSIPGPSCSTNLSG---SINLPGPTSSINLPGPSSSTSIAGPSGSINLPG 286
Query: 257 PSSAPDLPGPSSAPDLPG 274
PSS+ +PGPS + G
Sbjct: 287 PSSSTSIPGPSCSTGFSG 304
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 102/138 (73%), Gaps = 3/138 (2%)
Query: 155 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 214
+ GP+ + +LPGPSS+ +PGPS + +LPGPSS+ +LPGPSS+ +P PS + +LPGPSS
Sbjct: 170 ILGPTPSTNLPGPSSSTSIPGPSGSINLPGPSSSINLPGPSSSNSIPDPSGSINLPGPSS 229
Query: 215 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
+ +LPGPSS+ +PGPS + +L G + +LPGP+S+ +LPGPSS+ + GPS + +LPG
Sbjct: 230 SINLPGPSSSTSIPGPSCSTNLSG---SINLPGPTSSINLPGPSSSTSIAGPSGSINLPG 286
Query: 275 PSSAPDLPGPSSAPDLPG 292
PSS+ +PGPS + G
Sbjct: 287 PSSSTSIPGPSCSTGFSG 304
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 101/133 (75%), Gaps = 3/133 (2%)
Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 223
+ GP+ + +LPGPSS+ +PGPS + +LPGPSS+ +LPGPSS+ +P PS + +LPGPSS
Sbjct: 170 ILGPTPSTNLPGPSSSTSIPGPSGSINLPGPSSSINLPGPSSSNSIPDPSGSINLPGPSS 229
Query: 224 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
+ +LPGPSS+ +PGPS + +L G + +LPGP+S+ +LPGPSS+ + GPS + +LPG
Sbjct: 230 SINLPGPSSSTSIPGPSCSTNLSG---SINLPGPTSSINLPGPSSSTSIAGPSGSINLPG 286
Query: 284 PSSAPDLPGPSST 296
PSS+ +PGPS +
Sbjct: 287 PSSSTSIPGPSCS 299
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 88/116 (75%), Gaps = 3/116 (2%)
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
+ GP+ + +LPGPSS+ +PGPS + +LPGPSS+ +LPGPSS+ +P PS + +LPGPSS
Sbjct: 170 ILGPTPSTNLPGPSSSTSIPGPSGSINLPGPSSSINLPGPSSSNSIPDPSGSINLPGPSS 229
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+ +LPGPSS+ +PGPS + +L G + +LPGP+S+ +LPGPSS+ + GPS ++
Sbjct: 230 SINLPGPSSSTSIPGPSCSTNLSG---SINLPGPTSSINLPGPSSSTSIAGPSGSI 282
>gi|160165|gb|AAA70381.1| circumsporozoite protein [Plasmodium simium]
Length = 396
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 105/191 (54%), Gaps = 2/191 (1%)
Query: 22 ERPLEPDL--PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
+ P E L PG + A D PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 85 KNPRENKLKQPGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 144
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A + PG
Sbjct: 145 AGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPG 204
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
+ A + PG + A D PG + A + PG + A D PG + A + PG + A + PG + A +
Sbjct: 205 ANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGN 264
Query: 200 LPGPSSAPDLP 210
PG + A + P
Sbjct: 265 QPGANGAGNQP 275
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 101/181 (55%)
Query: 39 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 98
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 95 PGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGA 154
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 158
D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 155 DDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGA 214
Query: 159 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 215 NGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQ 274
Query: 219 P 219
P
Sbjct: 275 P 275
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 101/181 (55%)
Query: 48 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 107
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 95 PGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGA 154
Query: 108 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 167
D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 155 DDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGA 214
Query: 168 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 227
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 215 NGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQ 274
Query: 228 P 228
P
Sbjct: 275 P 275
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 101/181 (55%)
Query: 57 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 116
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 95 PGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGA 154
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 155 DDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGA 214
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 215 NGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQ 274
Query: 237 P 237
P
Sbjct: 275 P 275
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 101/181 (55%)
Query: 66 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 95 PGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGA 154
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 155 DDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGA 214
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 215 NGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQ 274
Query: 246 P 246
P
Sbjct: 275 P 275
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 101/181 (55%)
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 95 PGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGA 154
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 155 DDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGA 214
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 215 NGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQ 274
Query: 255 P 255
P
Sbjct: 275 P 275
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 101/181 (55%)
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 95 PGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGA 154
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 155 DDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGA 214
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 215 NGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQ 274
Query: 264 P 264
P
Sbjct: 275 P 275
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 101/181 (55%)
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 95 PGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGA 154
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 155 DDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGA 214
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 215 NGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQ 274
Query: 273 P 273
P
Sbjct: 275 P 275
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 101/181 (55%)
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 95 PGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGA 154
Query: 162 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 221
D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 155 DDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGA 214
Query: 222 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 215 NGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQ 274
Query: 282 P 282
P
Sbjct: 275 P 275
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 101/181 (55%)
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 95 PGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGA 154
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 155 DDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGA 214
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 215 NGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQ 274
Query: 291 P 291
P
Sbjct: 275 P 275
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 93/167 (55%)
Query: 129 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 95 PGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGA 154
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 155 DDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGA 214
Query: 249 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
+ A D PG + A + PG + A D PG + A + PG + A + PG +
Sbjct: 215 NGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANG 261
>gi|47523048|ref|NP_999285.1| coagulation factor V precursor [Sus scrofa]
gi|18202922|sp|Q9GLP1.1|FA5_PIG RecName: Full=Coagulation factor V; AltName: Full=Activated protein C
cofactor; Contains: RecName: Full=Coagulation factor V
heavy chain; Contains: RecName: Full=Coagulation factor V
light chain; Flags: Precursor
gi|11065896|gb|AAG28381.1|AF191308_1 coagulation factor V [Sus scrofa]
Length = 2258
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 151/286 (52%), Gaps = 3/286 (1%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
+++ L PDL + +PDL + +PDL + +PDL + +PDL + +PDL +
Sbjct: 1200 LSQTTLSPDLSHTTLSPDLGHTTLSPDLSHTTLSPDLSQTTLSPDLSHTTLSPDLGHTTL 1259
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+PDL + +PDL + +PDL + +PDL + +PDL + +PD + +PDL
Sbjct: 1260 SPDLSHTTLSPDLGHATLSPDLSHTTLSPDLGHTTLSPDLGHTTLSPDFSQTTLSPDLGH 1319
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
+ + D+ + +PDL + +PDL + +PDL + +PDL + +PDL + +PD
Sbjct: 1320 TTLSSDVSHTTLSPDLSHTTLSPDLSHTTLSPDLGHTTLSPDLSQTTLSPDLGHMTLSPD 1379
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
L + +PDL + +PDL + +PDL + +PDL + + D + +PDL +
Sbjct: 1380 LSHTTLSPDLGHTTLSPDLSHTTLSPDLGHMTLSPDLGQTTLSLDFGQTTLSPDLSHMTL 1439
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEA 305
+ +L + +PDL + +PDL +PDL T L S L E
Sbjct: 1440 SSELSHETLSPDLSQVTLSPDLSEIPFSPDLW---QTTLSSDLNET 1482
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 146/270 (54%), Gaps = 2/270 (0%)
Query: 22 ERPLEPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSA 80
R PDL S +P+L + +PD PG + +PDL + +PDL + +PDL + +
Sbjct: 1166 HRTTSPDLNQTSLSPELSQTTLSPD-PGHVTLSPDLSQTTLSPDLSHTTLSPDLGHTTLS 1224
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
PDL + +PDL + +PDL + +PDL + +PDL + +PDL + +PDL
Sbjct: 1225 PDLSHTTLSPDLSQTTLSPDLSHTTLSPDLGHTTLSPDLSHTTLSPDLGHATLSPDLSHT 1284
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ +PDL + +PDL + +PD + +PDL + + D+ + +PDL + +PDL
Sbjct: 1285 TLSPDLGHTTLSPDLGHTTLSPDFSQTTLSPDLGHTTLSSDVSHTTLSPDLSHTTLSPDL 1344
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
+ +PDL + +PDL + +PDL + +PDL + +PDL + +PDL + +
Sbjct: 1345 SHTTLSPDLGHTTLSPDLSQTTLSPDLGHMTLSPDLSHTTLSPDLGHTTLSPDLSHTTLS 1404
Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
PDL + +PDL + + D + +PDL
Sbjct: 1405 PDLGHMTLSPDLGQTTLSLDFGQTTLSPDL 1434
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 148/272 (54%), Gaps = 2/272 (0%)
Query: 20 VTERPLEPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 78
+++ L PD PG + +PDL + +PDL + +PDL + +PDL + +PDL +
Sbjct: 1182 LSQTTLSPD-PGHVTLSPDLSQTTLSPDLSHTTLSPDLGHTTLSPDLSHTTLSPDLSQTT 1240
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
+PDL + +PDL + +PDL + +PDL + +PDL + +PDL + +PDL
Sbjct: 1241 LSPDLSHTTLSPDLGHTTLSPDLSHTTLSPDLGHATLSPDLSHTTLSPDLGHTTLSPDLG 1300
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
+ +PD + +PDL + + D+ + +PDL + +PDL + +PDL + +P
Sbjct: 1301 HTTLSPDFSQTTLSPDLGHTTLSSDVSHTTLSPDLSHTTLSPDLSHTTLSPDLGHTTLSP 1360
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
DL + +PDL + +PDL + +PDL + +PDL + +PDL + +PDL +
Sbjct: 1361 DLSQTTLSPDLGHMTLSPDLSHTTLSPDLGHTTLSPDLSHTTLSPDLGHMTLSPDLGQTT 1420
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
+ D + +PDL + + +L + +PDL
Sbjct: 1421 LSLDFGQTTLSPDLSHMTLSSELSHETLSPDL 1452
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 125/238 (52%)
Query: 25 LEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 84
L PDL + +PDL + +PDL + +PDL + +PDL + +PD + +PDL
Sbjct: 1259 LSPDLSHTTLSPDLGHATLSPDLSHTTLSPDLGHTTLSPDLGHTTLSPDFSQTTLSPDLG 1318
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
+ + D+ + +PDL + +PDL + +PDL + +PDL + +PDL + +P
Sbjct: 1319 HTTLSSDVSHTTLSPDLSHTTLSPDLSHTTLSPDLGHTTLSPDLSQTTLSPDLGHMTLSP 1378
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
DL + +PDL + +PDL + +PDL + +PDL + + D + +PDL +
Sbjct: 1379 DLSHTTLSPDLGHTTLSPDLSHTTLSPDLGHMTLSPDLGQTTLSLDFGQTTLSPDLSHMT 1438
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
+ +L + +PDL + +PDL +PDL + + DL + +PDL S PD
Sbjct: 1439 LSSELSHETLSPDLSQVTLSPDLSEIPFSPDLWQTTLSSDLNETTLSPDLRQTSPHPD 1496
>gi|163637044|gb|ABY27340.1| circumsporozoite protein variant VK247 [Plasmodium vivax]
Length = 213
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 101/182 (55%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 5 QPGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 64
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
A D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 65 ADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPG 124
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 125 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGN 184
Query: 209 LP 210
P
Sbjct: 185 QP 186
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 101/182 (55%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 97
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 5 QPGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 64
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
A D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 65 ADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPG 124
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 125 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGN 184
Query: 218 LP 219
P
Sbjct: 185 QP 186
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 101/182 (55%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 5 QPGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 64
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
A D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 65 ADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPG 124
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 226
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 125 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGN 184
Query: 227 LP 228
P
Sbjct: 185 QP 186
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 101/182 (55%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 5 QPGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 64
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
A D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 65 ADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPG 124
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 235
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 125 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGN 184
Query: 236 LP 237
P
Sbjct: 185 QP 186
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 101/182 (55%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 5 QPGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 64
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
A D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 65 ADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPG 124
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 125 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGN 184
Query: 245 LP 246
P
Sbjct: 185 QP 186
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 101/182 (55%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 5 QPGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 64
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
A D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 65 ADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPG 124
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 125 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGN 184
Query: 254 LP 255
P
Sbjct: 185 QP 186
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 101/182 (55%)
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 5 QPGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 64
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
A D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 65 ADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPG 124
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 125 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGN 184
Query: 263 LP 264
P
Sbjct: 185 QP 186
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 101/182 (55%)
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 5 QPGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 64
Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
A D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 65 ADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPG 124
Query: 212 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 271
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 125 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGN 184
Query: 272 LP 273
P
Sbjct: 185 QP 186
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 101/182 (55%)
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 5 QPGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 64
Query: 161 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
A D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 65 ADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPG 124
Query: 221 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 280
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 125 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGN 184
Query: 281 LP 282
P
Sbjct: 185 QP 186
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 101/182 (55%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 5 QPGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 64
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
A D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 65 ADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPG 124
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 125 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGN 184
Query: 290 LP 291
P
Sbjct: 185 QP 186
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 101/183 (55%), Gaps = 3/183 (1%)
Query: 22 ERPLE---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 78
++P E D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 4 KQPGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGAN 63
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
A D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + P
Sbjct: 64 GADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQP 123
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G + A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A
Sbjct: 124 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAG 183
Query: 199 DLP 201
+ P
Sbjct: 184 NQP 186
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 93/169 (55%)
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 5 QPGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 64
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
A D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 65 ADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPG 124
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
+ A D PG + A + PG + A D PG + A + PG + A + PG +
Sbjct: 125 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGA 173
>gi|163637042|gb|ABY27339.1| circumsporozoite protein variant VK247 [Plasmodium vivax]
Length = 210
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 101/182 (55%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 1 QPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 60
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + PG
Sbjct: 61 AGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPG 120
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 121 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGN 180
Query: 209 LP 210
P
Sbjct: 181 QP 182
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 101/182 (55%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 97
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 1 QPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 60
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + PG
Sbjct: 61 AGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPG 120
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 121 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGN 180
Query: 218 LP 219
P
Sbjct: 181 QP 182
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 101/182 (55%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 1 QPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 60
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + PG
Sbjct: 61 AGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPG 120
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 226
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 121 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGN 180
Query: 227 LP 228
P
Sbjct: 181 QP 182
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 101/182 (55%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 1 QPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 60
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + PG
Sbjct: 61 AGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPG 120
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 235
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 121 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGN 180
Query: 236 LP 237
P
Sbjct: 181 QP 182
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 101/182 (55%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 1 QPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 60
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + PG
Sbjct: 61 AGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPG 120
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 121 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGN 180
Query: 245 LP 246
P
Sbjct: 181 QP 182
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 101/182 (55%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 1 QPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 60
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + PG
Sbjct: 61 AGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPG 120
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 121 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGN 180
Query: 254 LP 255
P
Sbjct: 181 QP 182
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 101/182 (55%)
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 1 QPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 60
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + PG
Sbjct: 61 AGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPG 120
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 121 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGN 180
Query: 263 LP 264
P
Sbjct: 181 QP 182
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 101/182 (55%)
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 1 QPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 60
Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + PG
Sbjct: 61 AGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPG 120
Query: 212 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 271
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 121 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGN 180
Query: 272 LP 273
P
Sbjct: 181 QP 182
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 101/182 (55%)
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 1 QPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 60
Query: 161 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + PG
Sbjct: 61 AGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPG 120
Query: 221 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 280
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 121 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGN 180
Query: 281 LP 282
P
Sbjct: 181 QP 182
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 101/182 (55%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 1 QPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 60
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + PG
Sbjct: 61 AGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPG 120
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 121 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGN 180
Query: 290 LP 291
P
Sbjct: 181 QP 182
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 97/174 (55%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 9 DQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGAN 68
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A D P
Sbjct: 69 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQP 128
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
G + A + PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 129 GANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 182
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 93/169 (55%)
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG +
Sbjct: 1 QPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 60
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + PG
Sbjct: 61 AGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPG 120
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
+ A D PG + A + PG + A D PG + A + PG + A + PG +
Sbjct: 121 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGA 169
>gi|345803274|ref|XP_003435037.1| PREDICTED: coagulation factor V [Canis lupus familiaris]
Length = 2208
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 137/270 (50%)
Query: 25 LEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 84
L PD + +PDL + +PDL + + DL + +PD +PDL + +PDL
Sbjct: 1169 LSPDFDQTTLSPDLDQTTFSPDLDQTTFSADLSQTTLSPDFDQTMLSPDLDQTTFSPDLS 1228
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
+ +PDL + +PD + +PDL + +PDL + +PDL + +PDL + +P
Sbjct: 1229 QTTLSPDLSKTTLSPDFDQTTLSPDLDQTTFSPDLDQTTFSPDLSQTTLSPDLSKTTLSP 1288
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
D + +PDL + +PDL + +PDL + +PDL + +PD + +PDL +
Sbjct: 1289 DFDQTTLSPDLDQTTFSPDLDQTTFSPDLSQTTLSPDLSKTTLSPDFDQTTLSPDLDQTT 1348
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
+PDL + +PDL + +PDL + +PD + +PDL + +PD +PD
Sbjct: 1349 FSPDLDQTTFSPDLSQTTLSPDLSQTTLSPDFDQTTLSPDLDQTTFSPDFGQTILSPDFD 1408
Query: 265 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
+PDL + +PD+ + PDL S
Sbjct: 1409 QILLSPDLSQATLSPDISQTALPPDLRQTS 1438
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 137/272 (50%)
Query: 25 LEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 84
L PDL + +PDL + + DL + +PD +PDL + +PDL + +PDL
Sbjct: 1178 LSPDLDQTTFSPDLDQTTFSADLSQTTLSPDFDQTMLSPDLDQTTFSPDLSQTTLSPDLS 1237
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
+ +PD + +PDL + +PDL + +PDL + +PDL + +PD + +P
Sbjct: 1238 KTTLSPDFDQTTLSPDLDQTTFSPDLDQTTFSPDLSQTTLSPDLSKTTLSPDFDQTTLSP 1297
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
DL + +PDL + +PDL + +PDL + +PD + +PDL + +PDL +
Sbjct: 1298 DLDQTTFSPDLDQTTFSPDLSQTTLSPDLSKTTLSPDFDQTTLSPDLDQTTFSPDLDQTT 1357
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
+PDL + +PDL + +PD + +PDL + +PD +PD +PDL
Sbjct: 1358 FSPDLSQTTLSPDLSQTTLSPDFDQTTLSPDLDQTTFSPDFGQTILSPDFDQILLSPDLS 1417
Query: 265 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
+ +PD+ + PDL S DL S T
Sbjct: 1418 QATLSPDISQTALPPDLRQTSLPLDLDQTSYT 1449
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 133/269 (49%), Gaps = 4/269 (1%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
+++ L PD +PDL + +PDL + +PDL + +PD + +PDL +
Sbjct: 1200 LSQTTLSPDFDQTMLSPDLDQTTFSPDLSQTTLSPDLSKTTLSPDFDQTTLSPDLDQTTF 1259
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+PDL + +PDL + +PDL + +PD + +PDL + +PDL + +PDL
Sbjct: 1260 SPDLDQTTFSPDLSQTTLSPDLSKTTLSPDFDQTTLSPDLDQTTFSPDLDQTTFSPDLSQ 1319
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
+ +PDL + +PD + +PDL + +PDL + +PDL + +PDL + +PD
Sbjct: 1320 TTLSPDLSKTTLSPDFDQTTLSPDLDQTTFSPDLDQTTFSPDLSQTTLSPDLSQTTLSPD 1379
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
+ +PDL + +PD +PD +PDL + +PD+ + PDL S
Sbjct: 1380 FDQTTLSPDLDQTTFSPDFGQTILSPDFDQILLSPDLSQATLSPDISQTALPPDLRQTSL 1439
Query: 260 APDLPGPS----SAPDLPGPSSAPDLPGP 284
DL S S+P + P LP P
Sbjct: 1440 PLDLDQTSYTSESSPSILLPEFGQTLPYP 1468
>gi|440900417|gb|ELR51561.1| Coagulation factor V [Bos grunniens mutus]
Length = 2182
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 135/240 (56%), Gaps = 2/240 (0%)
Query: 25 LEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDL 83
LE ++ +++ DL PS +PDL + +PD PG S +PDL S +PDL S +PDL
Sbjct: 1166 LELEVWQTATSLDLSQPSISPDLGQMALSPD-PGQESLSPDLGQTSLSPDLSQESLSPDL 1224
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
+ +PDL S +PDL + +PDL S +PDL + +PDL S +PDL + +
Sbjct: 1225 GQTALSPDLSQESLSPDLGQTALSPDLSQESLSPDLGQTALSPDLSQESLSPDLGQTALS 1284
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
PDL S +PDL + +PDL S +PDL + +PDL S +PDL + +PDL
Sbjct: 1285 PDLSQESLSPDLGQTALSPDLSQESLSPDLGQTALSPDLSQESLSPDLGQTALSPDLSQE 1344
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
S +PDL + +PDL S +PDL + +PDL S +PDL +PDL S +PDL
Sbjct: 1345 SLSPDLGQTALSPDLSQESLSPDLGQTALSPDLSQESLSPDLGQTPLSPDLSLESLSPDL 1404
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 103/266 (38%), Positives = 143/266 (53%), Gaps = 6/266 (2%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAP 90
PS ++ +++ DL PS +PDL + +PD PG S +PDL S +PDL S +P
Sbjct: 1164 PSLELEVWQTATSLDLSQPSISPDLGQMALSPD-PGQESLSPDLGQTSLSPDLSQESLSP 1222
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
DL + +PDL S +PDL + +PDL S +PDL + +PDL S +PDL +
Sbjct: 1223 DLGQTALSPDLSQESLSPDLGQTALSPDLSQESLSPDLGQTALSPDLSQESLSPDLGQTA 1282
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
+PDL S +PDL + +PDL S +PDL + +PDL S +PDL + +PDL
Sbjct: 1283 LSPDLSQESLSPDLGQTALSPDLSQESLSPDLGQTALSPDLSQESLSPDLGQTALSPDLS 1342
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
S +PDL + +PDL S +PDL + +PDL S +PDL +PDL S +P
Sbjct: 1343 QESLSPDLGQTALSPDLSQESLSPDLGQTALSPDLSQESLSPDLGQTPLSPDLSLESLSP 1402
Query: 271 DLPGPSSAPDLPGPSSAPDLPGPSST 296
DL S DL S DL S T
Sbjct: 1403 DL----SQLDLKQTSPPLDLNQTSHT 1424
>gi|163637038|gb|ABY27337.1| circumsporozoite protein variant VK247 [Plasmodium vivax]
Length = 220
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 105/195 (53%), Gaps = 5/195 (2%)
Query: 17 PSTVTERPL-EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
P +E L +P+ A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 2 PKNASENKLKQPE----DGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 57
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G + A + PG + A + PG + A + PG + A + PG + A D PG + A + PG + A
Sbjct: 58 GANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAG 117
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
+ PG + A D PG + A D PG + A + PG + A D PG + A + PG + A + PG +
Sbjct: 118 NQPGANGAGDQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGAN 177
Query: 196 SAPDLPGPSSAPDLP 210
A + PG + A + P
Sbjct: 178 GAGNQPGANGAGNQP 192
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 98/177 (55%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 16 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 75
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
G + A + PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 76 GANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 135
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 136 DQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 192
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 98/177 (55%)
Query: 52 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 111
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 16 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 75
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
G + A + PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 76 GANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 135
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 136 DQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 192
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 98/177 (55%)
Query: 61 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 16 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 75
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
G + A + PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 76 GANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 135
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 136 DQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 192
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 98/177 (55%)
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 16 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 75
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
G + A + PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 76 GANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 135
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 136 DQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 192
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 98/177 (55%)
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 16 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 75
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G + A + PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 76 GANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 135
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 136 DQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 192
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 98/177 (55%)
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 16 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 75
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
G + A + PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 76 GANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 135
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 136 DQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 192
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 98/177 (55%)
Query: 97 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 156
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 16 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 75
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
G + A + PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 76 GANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 135
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 273
D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 136 DQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 192
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 98/177 (55%)
Query: 106 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 165
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 16 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 75
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
G + A + PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 76 GANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 135
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 136 DQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 192
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 98/177 (55%)
Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 16 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 75
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G + A + PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 76 GANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 135
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 136 DQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 192
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 90/164 (54%)
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 16 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 75
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
G + A + PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 76 GANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 135
Query: 253 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
D PG + A + PG + A D PG + A + PG + A + PG +
Sbjct: 136 DQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGA 179
>gi|163637040|gb|ABY27338.1| circumsporozoite protein variant VK247 [Plasmodium vivax]
Length = 225
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 103/190 (54%), Gaps = 1/190 (0%)
Query: 22 ERPLEPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
+ P E L P A + PG + A + PG + A + PG + A D PG + A + PG + A
Sbjct: 3 KNPRENKLKQPEDGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGA 62
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 63 GDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGA 122
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ A + PG + A D PG + A + PG + A D PG + A + PG + A + PG + A +
Sbjct: 123 NGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQ 182
Query: 201 PGPSSAPDLP 210
PG + A + P
Sbjct: 183 PGANGAGNQP 192
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 98/177 (55%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
A + PG + A + PG + A + PG + A D PG + A + PG + A D PG + A + P
Sbjct: 16 GAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQP 75
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
G + A + PG + A + PG + A D PG + A + PG + A + PG + A + PG + A
Sbjct: 76 GANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAG 135
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 136 DQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 192
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 98/177 (55%)
Query: 52 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 111
A + PG + A + PG + A + PG + A D PG + A + PG + A D PG + A + P
Sbjct: 16 GAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQP 75
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
G + A + PG + A + PG + A D PG + A + PG + A + PG + A + PG + A
Sbjct: 76 GANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAG 135
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 136 DQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 192
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 98/177 (55%)
Query: 61 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
A + PG + A + PG + A + PG + A D PG + A + PG + A D PG + A + P
Sbjct: 16 GAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQP 75
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
G + A + PG + A + PG + A D PG + A + PG + A + PG + A + PG + A
Sbjct: 76 GANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAG 135
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 136 DQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 192
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 98/177 (55%)
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
A + PG + A + PG + A + PG + A D PG + A + PG + A D PG + A + P
Sbjct: 16 GAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQP 75
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
G + A + PG + A + PG + A D PG + A + PG + A + PG + A + PG + A
Sbjct: 76 GANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAG 135
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 136 DQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 192
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 98/177 (55%)
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
A + PG + A + PG + A + PG + A D PG + A + PG + A D PG + A + P
Sbjct: 16 GAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQP 75
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G + A + PG + A + PG + A D PG + A + PG + A + PG + A + PG + A
Sbjct: 76 GANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAG 135
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 136 DQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 192
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 98/177 (55%)
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
A + PG + A + PG + A + PG + A D PG + A + PG + A D PG + A + P
Sbjct: 16 GAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQP 75
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
G + A + PG + A + PG + A D PG + A + PG + A + PG + A + PG + A
Sbjct: 76 GANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAG 135
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 136 DQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 192
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 98/177 (55%)
Query: 97 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 156
A + PG + A + PG + A + PG + A D PG + A + PG + A D PG + A + P
Sbjct: 16 GAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQP 75
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
G + A + PG + A + PG + A D PG + A + PG + A + PG + A + PG + A
Sbjct: 76 GANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAG 135
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 273
D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 136 DQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 192
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 98/177 (55%)
Query: 106 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 165
A + PG + A + PG + A + PG + A D PG + A + PG + A D PG + A + P
Sbjct: 16 GAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQP 75
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
G + A + PG + A + PG + A D PG + A + PG + A + PG + A + PG + A
Sbjct: 76 GANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAG 135
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 136 DQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 192
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 98/177 (55%)
Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
A + PG + A + PG + A + PG + A D PG + A + PG + A D PG + A + P
Sbjct: 16 GAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQP 75
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G + A + PG + A + PG + A D PG + A + PG + A + PG + A + PG + A
Sbjct: 76 GANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAG 135
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 136 DQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 192
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 90/164 (54%)
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
A + PG + A + PG + A + PG + A D PG + A + PG + A D PG + A + P
Sbjct: 16 GAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQP 75
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
G + A + PG + A + PG + A D PG + A + PG + A + PG + A + PG + A
Sbjct: 76 GANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAG 135
Query: 253 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
D PG + A + PG + A D PG + A + PG + A + PG +
Sbjct: 136 DQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGA 179
>gi|73698102|gb|AAZ81588.1| circumsporozoite protein [Plasmodium vivax]
Length = 354
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 103/190 (54%), Gaps = 1/190 (0%)
Query: 22 ERPLEPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
+ P E L P A + PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 66 KNPRENKLKQPEDGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGA 125
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
+ PG + A + PG + A + PG + A D PG + A + PG + A + PG + A + PG
Sbjct: 126 GNQPGANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGA 185
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 186 NGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQ 245
Query: 201 PGPSSAPDLP 210
PG + A + P
Sbjct: 246 PGANGAGNQP 255
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 79 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 138
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
G + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A
Sbjct: 139 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 198
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
+ PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 199 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 255
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%)
Query: 52 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 111
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 79 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 138
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
G + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A
Sbjct: 139 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 198
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
+ PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 199 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 255
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%)
Query: 61 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 79 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 138
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
G + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A
Sbjct: 139 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 198
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
+ PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 199 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 255
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%)
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 79 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 138
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
G + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A
Sbjct: 139 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 198
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
+ PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 199 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 255
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%)
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 79 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 138
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A
Sbjct: 139 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 198
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
+ PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 199 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 255
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%)
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 79 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 138
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
G + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A
Sbjct: 139 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 198
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
+ PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 199 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 255
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%)
Query: 97 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 156
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 79 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 138
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
G + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A
Sbjct: 139 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 198
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 273
+ PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 199 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 255
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%)
Query: 106 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 165
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 79 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 138
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
G + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A
Sbjct: 139 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 198
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
+ PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 199 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 255
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%)
Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 79 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 138
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A
Sbjct: 139 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 198
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
+ PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 199 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 255
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 90/163 (55%)
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 79 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 138
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
G + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A
Sbjct: 139 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 198
Query: 253 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
+ PG + A D PG + A + PG + A + PG + A + PG +
Sbjct: 199 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 241
>gi|425771325|gb|EKV09771.1| hypothetical protein PDIG_60120 [Penicillium digitatum PHI26]
Length = 553
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 121/285 (42%), Positives = 144/285 (50%), Gaps = 36/285 (12%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
P P+ PG AP+ PG AP+ PG AP+ PG AP+ PG AP+ PG AP+
Sbjct: 160 TPGAPNAPGAPGAPNAPGTPGAPNAPGAPGAPNAPGTPGAPNAPGAPGAPNAPGTPGAPN 219
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
PG AP+ PG AP+ PG AP+ PG AP+ PG AP+ PG AP+ PG
Sbjct: 220 APGAPGAPNAPGTPGAPNAPGAPGAPNAPGTPGAPNAPGAPGAPNAPGTPGAPNAPGAPG 279
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------------------ 184
AP+ PG AP+ PG AP+ PG AP+ PG AP+ PG
Sbjct: 280 APNAPGTPGAPNAPGAPGAPNAPGTPGAPNAPGAPGAPNAPGTPGAPNAPGAPGAPNAPG 339
Query: 185 ------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
AP PG AP+ PG SAP PG AP+ PG SAP PG AP+ PG
Sbjct: 340 APGAPGAPHAPGTPGAPGAPNTPGAPSAPGAPG---APNTPGAPSAPGAPG---APNTPG 393
Query: 239 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
SAP PG AP+ PG SAP PG AP+ PG SAP PG
Sbjct: 394 APSAPGAPG---APNTPGAPSAPGAPG---APNTPGAPSAPGAPG 432
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 112/264 (42%), Positives = 134/264 (50%), Gaps = 33/264 (12%)
Query: 53 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 112
AP+ PG AP+ PG AP+ PG AP+ PG AP+ PG AP+ PG AP+ PG
Sbjct: 163 APNAPGAPGAPNAPGTPGAPNAPGAPGAPNAPGTPGAPNAPGAPGAPNAPGTPGAPNAPG 222
Query: 113 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 172
AP+ PG AP+ PG AP+ PG AP+ PG AP+ PG AP+ PG AP+
Sbjct: 223 APGAPNAPGTPGAPNAPGAPGAPNAPGTPGAPNAPGAPGAPNAPGTPGAPNAPGAPGAPN 282
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--------------------- 211
PG AP+ PG AP+ PG AP+ PG AP+ PG
Sbjct: 283 APGTPGAPNAPGAPGAPNAPGTPGAPNAPGAPGAPNAPGTPGAPNAPGAPGAPNAPGAPG 342
Query: 212 ---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
AP PG AP+ PG SAP PG AP+ PG SAP PG AP+ PG S
Sbjct: 343 APGAPHAPGTPGAPGAPNTPGAPSAPGAPG---APNTPGAPSAPGAPG---APNTPGAPS 396
Query: 269 APDLPGPSSAPDLPGPSSAPDLPG 292
AP PG AP+ PG SAP PG
Sbjct: 397 APGAPG---APNTPGAPSAPGAPG 417
>gi|52788757|gb|AAT73158.2| circumsporozoite protein [Plasmodium vivax]
Length = 237
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 98/181 (54%), Gaps = 1/181 (0%)
Query: 22 ERPLEPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
+ P E L P A D PG + A D PG + A + PG + A + PG + A + PG + A
Sbjct: 4 KNPRENKLKQPEDGAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGA 63
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
+ PG + A + PG + A D PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 64 GNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGA 123
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 124 NGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQ 183
Query: 201 P 201
P
Sbjct: 184 P 184
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
A D PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 52 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 111
A D PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 61 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
A D PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
A D PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
A D PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
A D PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 97 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 156
A D PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 106 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 165
A D PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 273
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
A D PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
A D PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 85/155 (54%)
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
A D PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
+ PG + A D PG + A + PG + A + PG +
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGA 171
>gi|12597459|gb|AAG60058.1| circumsporozoite protein [Plasmodium vivax]
gi|155090578|gb|ABS95459.1| circumsporozoite protein, partial [Plasmodium vivax]
Length = 239
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 103/190 (54%), Gaps = 1/190 (0%)
Query: 22 ERPLEPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
+ P E L P A + PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 10 KNPRENKLKQPEDGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGA 69
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
+ PG + A + PG + A + PG + A D PG + A + PG + A + PG + A + PG
Sbjct: 70 GNQPGANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGA 129
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 130 NGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANEAGNQPGANGAGNQ 189
Query: 201 PGPSSAPDLP 210
PG + A + P
Sbjct: 190 PGANGAGNQP 199
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 23 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 82
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
G + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A
Sbjct: 83 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 142
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
+ PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 143 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANEAGNQPGANGAGNQPGANGAGNQP 199
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%)
Query: 52 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 111
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 23 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 82
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
G + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A
Sbjct: 83 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 142
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
+ PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 143 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANEAGNQPGANGAGNQPGANGAGNQP 199
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%)
Query: 61 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 23 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 82
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
G + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A
Sbjct: 83 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 142
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
+ PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 143 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANEAGNQPGANGAGNQPGANGAGNQP 199
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%)
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 23 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 82
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
G + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A
Sbjct: 83 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 142
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
+ PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 143 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANEAGNQPGANGAGNQPGANGAGNQP 199
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%)
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 23 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 82
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A
Sbjct: 83 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 142
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
+ PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 143 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANEAGNQPGANGAGNQPGANGAGNQP 199
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%)
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 23 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 82
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
G + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A
Sbjct: 83 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 142
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
+ PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 143 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANEAGNQPGANGAGNQPGANGAGNQP 199
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%)
Query: 97 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 156
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 23 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 82
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
G + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A
Sbjct: 83 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 142
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 273
+ PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 143 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANEAGNQPGANGAGNQPGANGAGNQP 199
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%)
Query: 106 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 165
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 23 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 82
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
G + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A
Sbjct: 83 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 142
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
+ PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 143 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANEAGNQPGANGAGNQPGANGAGNQP 199
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%)
Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 23 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 82
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A
Sbjct: 83 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 142
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
+ PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 143 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANEAGNQPGANGAGNQPGANGAGNQP 199
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 90/164 (54%)
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 23 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 82
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
G + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A
Sbjct: 83 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 142
Query: 253 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
+ PG + A D PG + A + PG + A + PG + A + PG +
Sbjct: 143 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANEAGNQPGANGA 186
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 9/167 (5%)
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
A + PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 23 GAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 82
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
G + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A
Sbjct: 83 GANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 142
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQ 308
+ PG + A D PG + A + PG + A + PG + EAG+Q
Sbjct: 143 NQPGANGAGDQPGANGAGNQPGANGAGNQPGAN---------EAGNQ 180
>gi|52788751|gb|AAT73153.2| circumsporozoite protein [Plasmodium vivax]
Length = 237
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 98/181 (54%), Gaps = 1/181 (0%)
Query: 22 ERPLEPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
+ P E L P A D PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 4 KNPRENKLKQPEDGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGA 63
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
+ PG + A + PG + A D PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 64 GNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGA 123
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 124 NGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQ 183
Query: 201 P 201
P
Sbjct: 184 P 184
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 93/168 (55%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 93/168 (55%)
Query: 52 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 111
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 93/168 (55%)
Query: 61 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 93/168 (55%)
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 93/168 (55%)
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 93/168 (55%)
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 93/168 (55%)
Query: 97 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 156
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 93/168 (55%)
Query: 106 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 165
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 273
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 93/168 (55%)
Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 93/168 (55%)
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 85/155 (54%)
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
G + A D PG + A + PG + A D PG + A + PG + A + PG + A D PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAG 136
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
+ PG + A D PG + A + PG + A + PG +
Sbjct: 137 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGA 171
>gi|50295799|gb|AAT73152.1| circumsporozoite protein [Plasmodium vivax]
gi|50295807|gb|AAT73156.1| circumsporozoite protein [Plasmodium vivax]
gi|52788755|gb|AAT73157.2| circumsporozoite protein [Plasmodium vivax]
gi|52788761|gb|AAR84554.2| circumsporozoite protein [Plasmodium vivax]
Length = 237
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 98/181 (54%), Gaps = 1/181 (0%)
Query: 22 ERPLEPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
+ P E L P A D PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 4 KNPRENKLKQPEDGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGA 63
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
+ PG + A + PG + A D PG + A + PG + A D PG + A + PG + A D PG
Sbjct: 64 GNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGA 123
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ A + PG + A D PG + A + PG + A + PG + A + PG + A + PG + A +
Sbjct: 124 NGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQ 183
Query: 201 P 201
P
Sbjct: 184 P 184
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 93/168 (55%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
G + A D PG + A + PG + A D PG + A + PG + A D PG + A + PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAG 136
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 DQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 93/168 (55%)
Query: 52 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 111
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
G + A D PG + A + PG + A D PG + A + PG + A D PG + A + PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAG 136
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 DQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 93/168 (55%)
Query: 61 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
G + A D PG + A + PG + A D PG + A + PG + A D PG + A + PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAG 136
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 DQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 93/168 (55%)
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
G + A D PG + A + PG + A D PG + A + PG + A D PG + A + PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAG 136
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 DQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 93/168 (55%)
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G + A D PG + A + PG + A D PG + A + PG + A D PG + A + PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAG 136
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 DQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 93/168 (55%)
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
G + A D PG + A + PG + A D PG + A + PG + A D PG + A + PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAG 136
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 DQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 93/168 (55%)
Query: 97 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 156
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
G + A D PG + A + PG + A D PG + A + PG + A D PG + A + PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAG 136
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 DQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 93/168 (55%)
Query: 106 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 165
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
G + A D PG + A + PG + A D PG + A + PG + A D PG + A + PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAG 136
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 273
D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 DQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 93/168 (55%)
Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G + A D PG + A + PG + A D PG + A + PG + A D PG + A + PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAG 136
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 DQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 93/168 (55%)
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
G + A D PG + A + PG + A D PG + A + PG + A D PG + A + PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAG 136
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
D PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 137 DQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 184
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 85/155 (54%)
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 17 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 76
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
G + A D PG + A + PG + A D PG + A + PG + A D PG + A + PG + A
Sbjct: 77 GANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAG 136
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
D PG + A + PG + A + PG + A + PG +
Sbjct: 137 DQPGANGAGNQPGANGAGNQPGANGAGNQPGANGA 171
>gi|284518846|gb|ADB92545.1| circumsporozoite protein [Plasmodium vivax]
Length = 386
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 98/181 (54%), Gaps = 1/181 (0%)
Query: 22 ERPLEPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
+ P E L P A D PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 85 KNPRENKLKQPEDGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGA 144
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
+ PG + A + PG + A D PG + A D PG + A + PG + A + PG + A D PG
Sbjct: 145 GNQPGANGAGNQPGANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGA 204
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 205 NGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQ 264
Query: 201 P 201
P
Sbjct: 265 P 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 52 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 111
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 61 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 97 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 156
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 106 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 165
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 273
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 85/154 (55%)
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
+ PG + A D PG + A + PG + A + PG +
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANG 251
>gi|284518820|gb|ADB92532.1| circumsporozoite protein [Plasmodium vivax]
gi|284518826|gb|ADB92535.1| circumsporozoite protein [Plasmodium vivax]
gi|284518832|gb|ADB92538.1| circumsporozoite protein [Plasmodium vivax]
Length = 393
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 98/181 (54%), Gaps = 1/181 (0%)
Query: 22 ERPLEPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
+ P E L P A D PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 85 KNPRENKLKQPEDGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGA 144
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
+ PG + A + PG + A D PG + A D PG + A + PG + A + PG + A D PG
Sbjct: 145 GNQPGANGAGNQPGANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGA 204
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 205 NGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQ 264
Query: 201 P 201
P
Sbjct: 265 P 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 52 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 111
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 61 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 97 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 156
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 106 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 165
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 273
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 85/154 (55%)
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
+ PG + A D PG + A + PG + A + PG +
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANG 251
>gi|284518836|gb|ADB92540.1| circumsporozoite protein [Plasmodium vivax]
Length = 386
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 97/181 (53%), Gaps = 1/181 (0%)
Query: 22 ERPLEPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
+ P E L P A D PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 85 KNPRENKLKQPEDGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGA 144
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
+ PG + A + PG + A D PG + A D PG + A + PG + A + PG + A D PG
Sbjct: 145 GNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGA 204
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A
Sbjct: 205 NGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGKQ 264
Query: 201 P 201
P
Sbjct: 265 P 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
+ PG + A D PG + A + PG + A + PG + A + PG + A P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGKQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%)
Query: 52 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 111
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
+ PG + A D PG + A + PG + A + PG + A + PG + A P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGKQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%)
Query: 61 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
+ PG + A D PG + A + PG + A + PG + A + PG + A P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGKQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%)
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
+ PG + A D PG + A + PG + A + PG + A + PG + A P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGKQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%)
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
+ PG + A D PG + A + PG + A + PG + A + PG + A P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGKQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%)
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
+ PG + A D PG + A + PG + A + PG + A + PG + A P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGKQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%)
Query: 97 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 156
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
+ PG + A D PG + A + PG + A + PG + A + PG + A P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGKQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%)
Query: 106 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 165
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 273
+ PG + A D PG + A + PG + A + PG + A + PG + A P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGKQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%)
Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
+ PG + A D PG + A + PG + A + PG + A + PG + A P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGKQP 265
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%)
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
+ PG + A D PG + A + PG + A + PG + A + PG + A P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGKQP 265
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 85/154 (55%)
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
+ PG + A D PG + A + PG + A + PG +
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANG 251
>gi|284518818|gb|ADB92531.1| circumsporozoite protein [Plasmodium vivax]
Length = 386
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 98/181 (54%), Gaps = 1/181 (0%)
Query: 22 ERPLEPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
+ P E L P A D PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 85 KNPRENKLKQPEDGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGA 144
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
+ PG + A + PG + A D PG + A D PG + A + PG + A + PG + A D PG
Sbjct: 145 GNQPGANGAGNQPGANGADDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGA 204
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 205 NGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQ 264
Query: 201 P 201
P
Sbjct: 265 P 265
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGADDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 52 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 111
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGADDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 61 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGADDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGADDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGADDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGADDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 97 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 156
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGADDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 106 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 165
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGADDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 273
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGADDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 93/168 (55%)
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGADDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
+ PG + A D PG + A + PG + A + PG + A + PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 265
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 85/154 (55%)
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGADDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
+ PG + A D PG + A + PG + A + PG +
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANG 251
>gi|284518834|gb|ADB92539.1| circumsporozoite protein [Plasmodium vivax]
Length = 386
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 97/181 (53%), Gaps = 1/181 (0%)
Query: 22 ERPLEPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
+ P E L P A D PG + A + PG + A + PG + A + PG + A + PG + A
Sbjct: 85 KNPRENKLKQPEDGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGA 144
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
+ PG + A + PG + A D PG + A D PG + A + PG + A + PG + A D PG
Sbjct: 145 GNQPGANGAGNQPGANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGA 204
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ A D PG + A + PG + A D PG + A + PG + A + PG + A PG + A +
Sbjct: 205 NGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGGQPGANGAGNQ 264
Query: 201 P 201
P
Sbjct: 265 P 265
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
+ PG + A D PG + A + PG + A + PG + A PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGGQPGANGAGNQP 265
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%)
Query: 52 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 111
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
+ PG + A D PG + A + PG + A + PG + A PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGGQPGANGAGNQP 265
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%)
Query: 61 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
+ PG + A D PG + A + PG + A + PG + A PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGGQPGANGAGNQP 265
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%)
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
+ PG + A D PG + A + PG + A + PG + A PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGGQPGANGAGNQP 265
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%)
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
+ PG + A D PG + A + PG + A + PG + A PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGGQPGANGAGNQP 265
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%)
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
+ PG + A D PG + A + PG + A + PG + A PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGGQPGANGAGNQP 265
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%)
Query: 97 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 156
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
+ PG + A D PG + A + PG + A + PG + A PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGGQPGANGAGNQP 265
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%)
Query: 106 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 165
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 273
+ PG + A D PG + A + PG + A + PG + A PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGGQPGANGAGNQP 265
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%)
Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
+ PG + A D PG + A + PG + A + PG + A PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGGQPGANGAGNQP 265
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%)
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
+ PG + A D PG + A + PG + A + PG + A PG + A + P
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGGQPGANGAGNQP 265
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 80/145 (55%)
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 98 GAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 157
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
G + A D PG + A D PG + A + PG + A + PG + A D PG + A D PG + A
Sbjct: 158 GANGAGDQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGDQPGANGAG 217
Query: 271 DLPGPSSAPDLPGPSSAPDLPGPSS 295
+ PG + A D PG + A + PG +
Sbjct: 218 NQPGANGAGDQPGANGAGNQPGANG 242
>gi|402858183|ref|XP_003893601.1| PREDICTED: coagulation factor V [Papio anubis]
Length = 2171
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 137/261 (52%), Gaps = 2/261 (0%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 91
PSS ++ ++PDL + +P L + +PDL + +P+L + +P L +PD
Sbjct: 1101 PSSEREVWQTVTSPDLSQVTLSPQLSQTNFSPDLSHTTVSPELSQTNLSPALGQMPMSPD 1160
Query: 92 LPGPSSAPDLPGPSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
L + +PDL + +PDL + +PDL + +PDL + +PDL + +PDL
Sbjct: 1161 LSHTTLSPDLSHTTLSPDLNLSHTNLSPDLSHTTLSPDLSHTNLSPDLSHTTLSPDLSHT 1220
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
+ +PDL S +PDL +PDL + +PDL + +PDL + +PDL + +P L
Sbjct: 1221 TLSPDLSHTSLSPDLSHTILSPDLSPTTLSPDLSHTNLSPDLSHTTLSPDLSQTNLSPAL 1280
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
+PDL + +PDL + +PDL + +PDL + +P L +PDL + +
Sbjct: 1281 DQMPMSPDLSHTTLSPDLSHTNLSPDLSHTTLSPDLSQTNLSPALGQMPMSPDLSQTTLS 1340
Query: 270 PDLPGPSSAPDLPGPSSAPDL 290
PDL + +PDL + +P+L
Sbjct: 1341 PDLSHTTLSPDLSQTNLSPEL 1361
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 142/277 (51%), Gaps = 2/277 (0%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP--GP 77
+++ PDL + +P+L + +P L +PDL + +PDL + +PDL
Sbjct: 1125 LSQTNFSPDLSHTTVSPELSQTNLSPALGQMPMSPDLSHTTLSPDLSHTTLSPDLNLSHT 1184
Query: 78 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 137
+ +PDL + +PDL + +PDL + +PDL + +PDL S +PDL +PDL
Sbjct: 1185 NLSPDLSHTTLSPDLSHTNLSPDLSHTTLSPDLSHTTLSPDLSHTSLSPDLSHTILSPDL 1244
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
+ +PDL + +PDL + +PDL + +P L +PDL + +PDL + +
Sbjct: 1245 SPTTLSPDLSHTNLSPDLSHTTLSPDLSQTNLSPALDQMPMSPDLSHTTLSPDLSHTNLS 1304
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
PDL + +PDL + +P L +PDL + +PDL + +PDL + +P+L
Sbjct: 1305 PDLSHTTLSPDLSQTNLSPALGQMPMSPDLSQTTLSPDLSHTTLSPDLSQTNLSPELSHT 1364
Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
+ +P L +PDL + +PD+ + PDL S
Sbjct: 1365 NLSPALSQMPLSPDLSQVTVSPDISETTLLPDLSQIS 1401
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 132/253 (52%), Gaps = 2/253 (0%)
Query: 22 ERPLEPDLPGPSSAPDLPGPSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
+ P+ PDL + +PDL + +PDL + +PDL + +PDL + +PDL +
Sbjct: 1154 QMPMSPDLSHTTLSPDLSHTTLSPDLNLSHTNLSPDLSHTTLSPDLSHTNLSPDLSHTTL 1213
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+PDL + +PDL S +PDL +PDL + +PDL + +PDL + +PDL
Sbjct: 1214 SPDLSHTTLSPDLSHTSLSPDLSHTILSPDLSPTTLSPDLSHTNLSPDLSHTTLSPDLSQ 1273
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
+ +P L +PDL + +PDL + +PDL + +PDL + +P L +PD
Sbjct: 1274 TNLSPALDQMPMSPDLSHTTLSPDLSHTNLSPDLSHTTLSPDLSQTNLSPALGQMPMSPD 1333
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
L + +PDL + +PDL + +P+L + +P L +PDL + +PD+ +
Sbjct: 1334 LSQTTLSPDLSHTTLSPDLSQTNLSPELSHTNLSPALSQMPLSPDLSQVTVSPDISETTL 1393
Query: 260 APDLPGPSSAPDL 272
PDL S PDL
Sbjct: 1394 LPDLSQISPPPDL 1406
>gi|299469749|emb|CBN76603.1| similar to AHNAK nucleoprotein [Ectocarpus siliculosus]
Length = 5762
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 113/241 (46%), Gaps = 10/241 (4%)
Query: 16 LPSTVTERPLEPDLPG-----PSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPG 67
+PS ++P + G PS + GP +S PD+ G + PD+P S PD+ G
Sbjct: 4057 MPSVEVKKPKKGLFGGLSFKKPSGKTSVEGPDVGASVPDVSGDVAVPDVPADVSVPDVSG 4116
Query: 68 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 127
PD+ G S P + G PD+ G S P + G PD+ G PD+ G S P
Sbjct: 4117 SLKVPDVSGDVSVPGVSGSVDVPDMSGDVSLPGVSGSVDVPDVAGSLKVPDVSGDVSVPG 4176
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
+ S PD+ G PD+ G S PD+ G PD+ G S PD+ G PD+ G S
Sbjct: 4177 VSADVSVPDVSGSLKMPDVSGDVSVPDVSGSLKVPDVTGDVSVPDVSGSLEVPDVSGDVS 4236
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--DLPGPSSAPDL 245
PD+ G S P + S PD+ G PD+ S PD+ G P D+ PS + ++
Sbjct: 4237 EPDVGGDVSLPGVSADVSVPDVAGSLKVPDVSADVSVPDVSGSVDVPSVDIDAPSGSVEV 4296
Query: 246 P 246
P
Sbjct: 4297 P 4297
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 105/220 (47%), Gaps = 5/220 (2%)
Query: 50 PSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
PS + GP +S PD+ G + PD+P S PD+ G PD+ G S P + G
Sbjct: 4078 PSGKTSVEGPDVGASVPDVSGDVAVPDVPADVSVPDVSGSLKVPDVSGDVSVPGVSGSVD 4137
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
PD+ G S P + G PD+ G PD+ G S P + S PD+ G PD+ G
Sbjct: 4138 VPDMSGDVSLPGVSGSVDVPDVAGSLKVPDVSGDVSVPGVSADVSVPDVSGSLKMPDVSG 4197
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 226
S PD+ G PD+ G S PD+ G PD+ G S PD+ G S P + S PD
Sbjct: 4198 DVSVPDVSGSLKVPDVTGDVSVPDVSGSLEVPDVSGDVSEPDVGGDVSLPGVSADVSVPD 4257
Query: 227 LPGPSSAPDLPGPSSAPDLPGPSSAP--DLPGPSSAPDLP 264
+ G PD+ S PD+ G P D+ PS + ++P
Sbjct: 4258 VAGSLKVPDVSADVSVPDVSGSVDVPSVDIDAPSGSVEVP 4297
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 105/220 (47%), Gaps = 5/220 (2%)
Query: 77 PSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
PS + GP +S PD+ G + PD+P S PD+ G PD+ G S P + G
Sbjct: 4078 PSGKTSVEGPDVGASVPDVSGDVAVPDVPADVSVPDVSGSLKVPDVSGDVSVPGVSGSVD 4137
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
PD+ G S P + G PD+ G PD+ G S P + S PD+ G PD+ G
Sbjct: 4138 VPDMSGDVSLPGVSGSVDVPDVAGSLKVPDVSGDVSVPGVSADVSVPDVSGSLKMPDVSG 4197
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
S PD+ G PD+ G S PD+ G PD+ G S PD+ G S P + S PD
Sbjct: 4198 DVSVPDVSGSLKVPDVTGDVSVPDVSGSLEVPDVSGDVSEPDVGGDVSLPGVSADVSVPD 4257
Query: 254 LPGPSSAPDLPGPSSAPDLPGPSSAP--DLPGPSSAPDLP 291
+ G PD+ S PD+ G P D+ PS + ++P
Sbjct: 4258 VAGSLKVPDVSADVSVPDVSGSVDVPSVDIDAPSGSVEVP 4297
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 118/251 (47%), Gaps = 18/251 (7%)
Query: 59 PSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
PS + GP +S PD+ G + PD+P S PD+ G PD+ G S P + G
Sbjct: 4078 PSGKTSVEGPDVGASVPDVSGDVAVPDVPADVSVPDVSGSLKVPDVSGDVSVPGVSGSVD 4137
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
PD+ G S LPG S + D+ PD+ G PD+ G S P + S PD+ G
Sbjct: 4138 VPDMSGDVS---LPGVSGSVDV------PDVAGSLKVPDVSGDVSVPGVSADVSVPDVSG 4188
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 235
PD+ G S PD+ G PD+ G S PD+ G PD+ G S PD+ G S P
Sbjct: 4189 SLKMPDVSGDVSVPDVSGSLKVPDVTGDVSVPDVSGSLEVPDVSGDVSEPDVGGDVSLPG 4248
Query: 236 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--DLPGPSSAPDLPGPSSAPDLPGP 293
+ S PD+ G PD+ S PD+ G P D+ PS + ++P + DL G
Sbjct: 4249 VSADVSVPDVAGSLKVPDVSADVSVPDVSGSVDVPSVDIDAPSGSVEVP----SVDLAGK 4304
Query: 294 SSTVLGSYLGE 304
+V G GE
Sbjct: 4305 IPSVEGGVGGE 4315
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 125/261 (47%), Gaps = 11/261 (4%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDL 83
PD+ G +AP L SAPDL P + D+ P ++ PD+ G S PD+ G S D+
Sbjct: 4982 PDVSGEVTAPGLS--VSAPDLSVPDVSADVTVPDATAALPDVSGGVSLPDVSGDVSVLDV 5039
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
SA D+ G S P++ S PD S PD+ S PD+ G PD+ G S
Sbjct: 5040 D--VSAADVSGDVSVPNVS--LSMPDASADVSVPDVSAGVSVPDVSGSLKVPDVSGDVSV 5095
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
PD+ G PD+ G S P + S PD+ G PD+ G S P + G S P +
Sbjct: 5096 PDVSGSLKVPDVSGDMSLPGVSADVSVPDVSGSLKVPDVSGDVSVPGVSGEMSLPGVSAD 5155
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
S PD+ G PD+ G S PD+ G S P + S PD+ G P++ G S P++
Sbjct: 5156 VSVPDVAGSLKVPDVSGDVSVPDVSGDMSLPGVSADVSVPDVAGSLKVPNVGGDVSVPEV 5215
Query: 264 PGPSSAP--DLPGPSSAPDLP 282
G P ++ PS + ++P
Sbjct: 5216 SGSVDVPSVNMDAPSGSVEVP 5236
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 95/201 (47%), Gaps = 10/201 (4%)
Query: 114 SSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
+ APDL P + D+ GP SAPD+ G S PD+ G S PD+ S PD+ G
Sbjct: 4465 AKAPDLSVPGVSADVSGPDVTISAPDVSGDVSVPDVSGDVSVPDVSADVSVPDVSGSLKV 4524
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
PD+ G S PD G P + G S PD+ S PD+ S PD+ G PD+ G
Sbjct: 4525 PDVTGDLSVPDFSGSLKVPGVSGDVSVPDVSADVSVPDVSADVSVPDVAGSLKVPDVSGD 4584
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--DLPGPSS-- 286
S PD+ G S P + S PD+ G PD+ G S PD+ G P D+ PS
Sbjct: 4585 VSVPDVGGDVSLPGVSADVSVPDVAGSLKVPDVSGDVSVPDVSGSVDVPSVDIDAPSGSV 4644
Query: 287 ---APDLPGPSSTVLGSYLGE 304
+ DL G +V G GE
Sbjct: 4645 EVPSVDLAGKMPSVEGGVGGE 4665
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 105/224 (46%), Gaps = 16/224 (7%)
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
S PD+ S PD+ ++ PD+ S PD+ G PD+ G S PD+ G S PD+
Sbjct: 3269 SVPDVSADVSVPDVT--ATVPDVSADVSVPDVSGSLKVPDV-GDISVPDVSG--SLPDVS 3323
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
GP + D+ S P + G S PD+ S PD+ G PD+ G S P + G P
Sbjct: 3324 GPEVSADV----SVPGVSGDVSVPDVSADVSVPDVSGSLKVPDVSGDVSVPGVSGSVDVP 3379
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
D+ G S P + G PD+ G PD+ G S PD+ S PD+ G PD+ G
Sbjct: 3380 DMSGDVSLPGVSGSVDVPDVAGSLKVPDVTGDVSVPDVSADVSVPDVSGSLKVPDVSGEV 3439
Query: 268 SAPDLPGPSSAP--DLPGPSS-----APDLPGPSSTVLGSYLGE 304
S PD+ G P D+ PS + DL G +V G GE
Sbjct: 3440 SMPDVSGSMDVPSVDIDAPSGSVEVPSVDLAGKMPSVEGGVGGE 3483
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 135/325 (41%), Gaps = 65/325 (20%)
Query: 31 GPSSAPDLPGPSSAPDLPGP--SSAPDLP-----GPSSAPDLPGPSSAPDLPGPSSAPDL 83
G +S P++PG ++ D+P +A DLP PS + PS + D PS++ D+
Sbjct: 3943 GKTSTPEIPGVDASVDVPSVIGDAAVDLPTASVEAPSMDASVDVPSVSADASLPSASVDV 4002
Query: 84 P----------------------GPSSA----------PDLPGP-----SSAPDLPG--- 103
P G SA D+ G + APD+P
Sbjct: 4003 PSAEVDASMPSVGDLSADVGAKVGELSADVGGKVDDLKTDVGGKVGDLSAKAPDMPSVEV 4062
Query: 104 ---------------PSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
PS + GP +S PD+ G + PD+P S PD+ G PD
Sbjct: 4063 KKPKKGLFGGLSFKKPSGKTSVEGPDVGASVPDVSGDVAVPDVPADVSVPDVSGSLKVPD 4122
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
+ G S P + G PD+ G S P + G PD+ G PD+ G S P + S
Sbjct: 4123 VSGDVSVPGVSGSVDVPDMSGDVSLPGVSGSVDVPDVAGSLKVPDVSGDVSVPGVSADVS 4182
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
PD+ G PD+ G S PD+ G PD+ G S PD+ G PD+ G S PD+ G
Sbjct: 4183 VPDVSGSLKMPDVSGDVSVPDVSGSLKVPDVTGDVSVPDVSGSLEVPDVSGDVSEPDVGG 4242
Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDL 290
S P + S PD+ G PD+
Sbjct: 4243 DVSLPGVSADVSVPDVAGSLKVPDV 4267
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 102/328 (31%), Positives = 138/328 (42%), Gaps = 59/328 (17%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
PD+ SAPD+ G S PD+ S PD+ S PD+ G PD+ G S PD+ P
Sbjct: 2826 PDVSADVSAPDVSGDVSVPDVSAAVSVPDVSADVSVPDVSGSLKVPDVSGDVSVPDVSVP 2885
Query: 87 S-SAPDLPGPSSAP--DLPGPSSAPDLPGPSSAPDLPG------PSSAPDLP---GPSS- 133
S PD+ G P D+ PS + ++P A +P +APD+ G +S
Sbjct: 2886 DVSVPDVSGSVDVPSVDIDAPSGSVEVPSVDLAGKMPEMPSGDVSVTAPDVKVEGGDTSL 2945
Query: 134 ------------------------APDLPGPSSAPDLPGPSSAPDLP------------- 156
PD PS D+ SAPD+P
Sbjct: 2946 TAGLAAGGVAAVGAIGAAVGLSGDKPDAELPS--VDVDASVSAPDVPSVDVNKPKKGLFG 3003
Query: 157 ---GPSSAP-DLPGPSSA-PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
G S A ++P A PD+ +S PD+ S PD+ G S PD+ G PD+ G
Sbjct: 3004 GLFGSSKAKIEVPDADVAVPDVAADASVPDVSADVSVPDVSGDLSVPDVSGSLKLPDVSG 3063
Query: 212 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 271
S P + S PD+ G PD+ G S PD+ G PD+ G S PD+ G PD
Sbjct: 3064 DVSLPGVSADVSMPDVSGSVDVPDVSGDVSVPDVSGSLKVPDVSGDVSVPDVSGSLKVPD 3123
Query: 272 LPGPSSAPDLPGPSSAP--DLPGPSSTV 297
+ S PD+ G P D+ PS +V
Sbjct: 3124 VSADVSVPDVSGSVDVPSVDIDAPSGSV 3151
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 104/340 (30%), Positives = 140/340 (41%), Gaps = 64/340 (18%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPG 85
PD+ G S PD+ S PD+ S PD+ G PD+ G S PD+ P S PD+ G
Sbjct: 2835 PDVSGDVSVPDVSAAVSVPDVSADVSVPDVSGSLKVPDVSGDVSVPDVSVPDVSVPDVSG 2894
Query: 86 PSSAP--DLPGPSSAPDLPGPSSAPDLPG------PSSAPDLP---GPSS---------- 124
P D+ PS + ++P A +P +APD+ G +S
Sbjct: 2895 SVDVPSVDIDAPSGSVEVPSVDLAGKMPEMPSGDVSVTAPDVKVEGGDTSLTAGLAAGGV 2954
Query: 125 ---------------APDLPGPSSAPDLPGPSSAPDLP----------------GPSSAP 153
PD PS D+ SAPD+P G S A
Sbjct: 2955 AAVGAIGAAVGLSGDKPDAELPS--VDVDASVSAPDVPSVDVNKPKKGLFGGLFGSSKAK 3012
Query: 154 -DLPGPSSA-PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
++P A PD+ +S PD+ S PD+ G S PD+ G PD+ G S P +
Sbjct: 3013 IEVPDADVAVPDVAADASVPDVSADVSVPDVSGDLSVPDVSGSLKLPDVSGDVSLPGVSA 3072
Query: 212 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 271
S PD+ G PD+ G S PD+ G PD+ G S PD+ G PD+ S PD
Sbjct: 3073 DVSMPDVSGSVDVPDVSGDVSVPDVSGSLKVPDVSGDVSVPDVSGSLKVPDVSADVSVPD 3132
Query: 272 LPGPSSAP--DLPGPSS-----APDLPGPSSTVLGSYLGE 304
+ G P D+ PS + DL G +V G GE
Sbjct: 3133 VSGSVDVPSVDIDAPSGSVEVPSVDLAGKMPSVEGGVGGE 3172
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 75/159 (47%), Gaps = 6/159 (3%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
PD+ GP + D+ S P + G S PD+ S PD+ G PD+ G S P + G
Sbjct: 3320 PDVSGPEVSADV----SVPGVSGDVSVPDVSADVSVPDVSGSLKVPDVSGDVSVPGVSGS 3375
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
PD+ G S P + G PD+ G PD+ G S PD+ S PD+ G PD+
Sbjct: 3376 VDVPDMSGDVSLPGVSGSVDVPDVAGSLKVPDVTGDVSVPDVSADVSVPDVSGSLKVPDV 3435
Query: 147 PGPSSAPDLPGPSSAP--DLPGPSSAPDLPGPSSAPDLP 183
G S PD+ G P D+ PS + ++P A +P
Sbjct: 3436 SGEVSMPDVSGSMDVPSVDIDAPSGSVEVPSVDLAGKMP 3474
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 119/283 (42%), Gaps = 15/283 (5%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
PD+ S PD+ G PD+ G S P + G PD+ G PD+ G S P + G
Sbjct: 1372 PDVSADVSVPDVSGSVDVPDVSGDVSVPGVSGSVDVPDVAGSLKVPDVSGEVSVPGVSGS 1431
Query: 87 SSAP--DLPGPSSAPDLPGPSSAPDLPGPSSAP--DLPGPS---SAPDLP---GPSSAPD 136
P D+ PS + ++P A +P +LP + +APD+ G +S
Sbjct: 1432 VDVPSVDIDAPSGSVEVPSVDLAGKMPSVEGGVGGELPSGNVSVTAPDVKVEGGDTSLAA 1491
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA--PDLPGP 194
+ +A L G +LP + P ++ D+ P L G
Sbjct: 1492 GLAAGGVAAVGAIGAAVGLSGDKPDAELPSGDLDASVSVPDASVDVKKPKKGLFGGLFGS 1551
Query: 195 SSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
+ ++P SAPD+ + PD+ G S P + G S PDL G S PD+ G PD
Sbjct: 1552 KAKIEVPDADVSAPDV--TVTVPDMGGDVSVPGISGDVSGPDLSGDVSGPDVSGSLKVPD 1609
Query: 254 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
+ G S PD+ G PD+ S PD+ G PD+ G S
Sbjct: 1610 VSGDVSVPDVSGSLKVPDVSADVSVPDVSGSLKVPDVSGAVSV 1652
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
PD+ S PD+ G PD+ G S PD G P + G S PD+ S PD+
Sbjct: 4507 PDVSADVSVPDVSGSLKVPDVTGDLSVPDFSGSLKVPGVSGDVSVPDVSADVSVPDVSAD 4566
Query: 87 SSAPDLPGPSSAPDLPGPSSAPD------LPGPSS---APDLPGPSSAPDLPGPSSAPDL 137
S PD+ G PD+ G S PD LPG S+ PD+ G PD+ G S PD+
Sbjct: 4567 VSVPDVAGSLKVPDVSGDVSVPDVGGDVSLPGVSADVSVPDVAGSLKVPDVSGDVSVPDV 4626
Query: 138 PGPSSAP--DLPGPSSAPDLPGPSSAPDLP 165
G P D+ PS + ++P A +P
Sbjct: 4627 SGSVDVPSVDIDAPSGSVEVPSVDLAGKMP 4656
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 80/186 (43%), Gaps = 25/186 (13%)
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPS----------------SAPDLPGPSSAPDLPGP 185
S PD+ S PD+ SAPD+ G S PD+ S PD+ G
Sbjct: 2310 SVPDVSAGVSVPDVS--VSAPDVSGDVSVPDVSVSVPDVAAGISVPDVSADVSVPDVSGD 2367
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
S P + S PD+ G P++ G S PD+ G PD+ G S PD+ G PD+
Sbjct: 2368 VSLPGVSADVSVPDVSGSLKVPEVSGDVSVPDVSGSLKMPDVSGDVSVPDVSGSLKVPDV 2427
Query: 246 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--DLPGPSS-----APDLPGPSSTVL 298
G S PD+ G P + G S P++ G P D+ PS + DL G +V
Sbjct: 2428 SGDVSVPDVSGSLKVPYVGGDVSMPEVSGSVDMPSVDMDAPSGSVEVPSVDLAGKMPSVE 2487
Query: 299 GSYLGE 304
G GE
Sbjct: 2488 GGVGGE 2493
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 178 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
SAPD+ + PD+ G S P + G S PDL G S PD+ G PD+ G S PD+
Sbjct: 1563 SAPDVT--VTVPDMGGDVSVPGISGDVSGPDLSGDVSGPDVSGSLKVPDVSGDVSVPDVS 1620
Query: 238 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--DLPGPSS-----APDL 290
G PD+ S PD+ G PD+ G S P++ G P ++ PS + DL
Sbjct: 1621 GSLKVPDVSADVSVPDVSGSLKVPDVSGAVSVPEVSGSVDVPSVEMDAPSGSVEVPSVDL 1680
Query: 291 PGPSSTVLGSYLGE 304
G +V G GE
Sbjct: 1681 AGKMPSVEGGVGGE 1694
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
Query: 34 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 93
S PD+ S PD+ G S P + S PD+ G P++ G S PD+ G PD+
Sbjct: 2351 SVPDVSADVSVPDVSGDVSLPGVSADVSVPDVSGSLKVPEVSGDVSVPDVSGSLKMPDVS 2410
Query: 94 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--DLPGPSS 151
G S PD+ G PD+ G S PD+ G P + G S P++ G P D+ PS
Sbjct: 2411 GDVSVPDVSGSLKVPDVSGDVSVPDVSGSLKVPYVGGDVSMPEVSGSVDMPSVDMDAPSG 2470
Query: 152 APDLPGPSSAPDLP 165
+ ++P A +P
Sbjct: 2471 SVEVPSVDLAGKMP 2484
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
S PD+ S PD+ G S P + S PD+ G P++ G S PD+ G PD+
Sbjct: 2351 SVPDVSADVSVPDVSGDVSLPGVSADVSVPDVSGSLKVPEVSGDVSVPDVSGSLKMPDVS 2410
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--DLPGPSS 160
G S PD+ G PD+ G S PD+ G P + G S P++ G P D+ PS
Sbjct: 2411 GDVSVPDVSGSLKVPDVSGDVSVPDVSGSLKVPYVGGDVSMPEVSGSVDMPSVDMDAPSG 2470
Query: 161 APDLPGPSSAPDLP 174
+ ++P A +P
Sbjct: 2471 SVEVPSVDLAGKMP 2484
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 136/323 (42%), Gaps = 63/323 (19%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P L G + PD+ +APD+ + A D+ G S PD+ G S PD+ +APD+ G
Sbjct: 2579 KPSLKGKAKVPDVD--VAAPDVAVDAPAVDVSG--SLPDVSGEVSVPDVS--ITAPDVSG 2632
Query: 86 P-----SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG- 139
+S PD +S PD+ G + PD+ G S PD+ G S P++ G S P + G
Sbjct: 2633 ALPDVSASVPDASVDASVPDVSG--ALPDVSGDVSVPDVSG--SLPEVSGDVSVPGVSGS 2688
Query: 140 -PSSAPDLPGPSSAPDLPGPSSAPDLP-------GPSSAPDLPGPSSAPDLPGP------ 185
P D+P S + P + DLP PS + D PS++ D+P
Sbjct: 2689 LPDVGVDVPSVSGDASVEVPGVSGDLPLFDASLDVPSVSADASLPSASVDVPSAEVDASV 2748
Query: 186 -----------SSAPDLPGPSSAPDLPGPSSAPDLP--------------------GPSS 214
S DL SA + AP++P G
Sbjct: 2749 PSVGDLSADVGSKVGDLKADLSAKMGDISAKAPEVPSVEVKKPKKGLFGSIFGSSKGKIE 2808
Query: 215 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
PD S PD+ S PD+ SAPD+ G S PD+ S PD+ S PD+ G
Sbjct: 2809 VPD--ADVSVPDVSADVSVPDVSADVSAPDVSGDVSVPDVSAAVSVPDVSADVSVPDVSG 2866
Query: 275 PSSAPDLPGPSSAPDLPGPSSTV 297
PD+ G S PD+ P +V
Sbjct: 2867 SLKVPDVSGDVSVPDVSVPDVSV 2889
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 118/277 (42%), Gaps = 26/277 (9%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
PD+ G PD+ G S PD+ G PD+ G S PD+ G PD+ S PD+ G
Sbjct: 3077 PDVSGSVDVPDVSGDVSVPDVSGSLKVPDVSGDVSVPDVSGSLKVPDVSADVSVPDVSGS 3136
Query: 87 SSAP--DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-----SAPDLP---GPSSAPD 136
P D+ PS + ++P A +P PS +APD+ G +S
Sbjct: 3137 VDVPSVDIDAPSGSVEVPSVDLAGKMPSVEGGVGGELPSGDVSVTAPDVKVEGGDTSLTA 3196
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
+ +A L G +LP + D+ S PD+P + D+ P
Sbjct: 3197 GLAAGGVAAVGAIGAAVGLSGDKPDAELP----SGDVDASVSLPDVP----SVDVKKPKK 3248
Query: 197 A--PDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
L G + ++P S PD+ S PD+ ++ PD+ S PD+ G PD
Sbjct: 3249 GLFGGLFGSKAKIEVPDADVSVPDVSADVSVPDVT--ATVPDVSADVSVPDVSGSLKVPD 3306
Query: 254 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
+ G S PD+ G S PD+ GP + D+ P + D+
Sbjct: 3307 V-GDISVPDVSG--SLPDVSGPEVSADVSVPGVSGDV 3340
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 120/288 (41%), Gaps = 31/288 (10%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--DLPGPSSAPDLP 84
PD+ G PD+ G S PD+ G PD+ S PD+ G P D+ PS + ++P
Sbjct: 3095 PDVSGSLKVPDVSGDVSVPDVSGSLKVPDVSADVSVPDVSGSVDVPSVDIDAPSGSVEVP 3154
Query: 85 GPSSAPDLPGPSSAPDLPGPS-----SAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPD 136
A +P PS +APD+ G +S + +A
Sbjct: 3155 SVDLAGKMPSVEGGVGGELPSGDVSVTAPDVKVEGGDTSLTAGLAAGGVAAVGAIGAAVG 3214
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA--PDLPGPSSAPDLP-G 193
L G +LP + D+ S PD+P + D+ P L G + ++P
Sbjct: 3215 LSGDKPDAELP----SGDVDASVSLPDVP----SVDVKKPKKGLFGGLFGSKAKIEVPDA 3266
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
S PD+ S PD+ ++ PD+ S PD+ G PD+ G S PD+ G S PD
Sbjct: 3267 DVSVPDVSADVSVPDVT--ATVPDVSADVSVPDVSGSLKVPDV-GDISVPDVSG--SLPD 3321
Query: 254 LPGPS-----SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
+ GP S P + G S PD+ S PD+ G PD+ G S
Sbjct: 3322 VSGPEVSADVSVPGVSGDVSVPDVSADVSVPDVSGSLKVPDVSGDVSV 3369
Score = 41.2 bits (95), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
S P++ S PD+ S PD+ G PD+ G S P + G PD+ G PD+
Sbjct: 1361 SVPEVSADVSVPDVSADVSVPDVSGSVDVPDVSGDVSVPGVSGSVDVPDVAGSLKVPDVS 1420
Query: 265 GPSSAPDLPGPSSAP--DLPGPSS-----APDLPGPSSTVLGSYLGE 304
G S P + G P D+ PS + DL G +V G GE
Sbjct: 1421 GEVSVPGVSGSVDVPSVDIDAPSGSVEVPSVDLAGKMPSVEGGVGGE 1467
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 214 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 273
S P++ S PD+ S PD+ G S P++ S PD+ G P + G S PD+
Sbjct: 1166 SVPEVSADVSVPDVSADVSVPDVSGDVSVPNVSADVSVPDVTGSVKMPQVSGDVSVPDVS 1225
Query: 274 GPSSAP----DLP-GPSSAP--DLPGPSSTVLGSYLGE 304
G P D+P G + AP DL G +V G GE
Sbjct: 1226 GSVKVPSVDMDVPLGSAEAPSVDLAGKMPSVEGGVGGE 1263
>gi|27806943|ref|NP_776304.1| coagulation factor V precursor [Bos taurus]
gi|2493324|sp|Q28107.1|FA5_BOVIN RecName: Full=Coagulation factor V; AltName: Full=Activated protein C
cofactor; Contains: RecName: Full=Coagulation factor V
heavy chain; Contains: RecName: Full=Coagulation factor V
light chain; Flags: Precursor
gi|163038|gb|AAA30512.1| factor V [Bos taurus]
Length = 2211
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 101/259 (38%), Positives = 141/259 (54%), Gaps = 4/259 (1%)
Query: 25 LEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDL 83
LE ++ +++ DL PS +PDL + +PD PG S +PDL S +PDL S +PDL
Sbjct: 1180 LELEVWQTATSLDLSQPSISPDLGQMALSPD-PGQESLSPDLGQTSLSPDLSQESLSPDL 1238
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSS 142
+ +PD S +PDL + +PD S +PDL + +PD PG S +PDL S
Sbjct: 1239 GQTALSPDPSQESLSPDLGQTALSPDPSQESLSPDLGQTALSPD-PGQESLSPDLGQTSL 1297
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+PDL S +PDL + +PD S +PDL + +PD S +PDL S +PDL
Sbjct: 1298 SPDLSQESLSPDLGQTALSPDPSQESLSPDLGQTALSPDPSQESLSPDLGQTSLSPDLGQ 1357
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
S +PDL + +PD S +PDL S +PDL S +PDL + +PDL S +PD
Sbjct: 1358 ESLSPDLGQTALSPDPSQESLSPDLGQTSLSPDLGQESLSPDLGQTALSPDLSQESLSPD 1417
Query: 263 LPGPSSAPDLPGPSSAPDL 281
L +PDL S +PDL
Sbjct: 1418 LGQTPLSPDLSLESLSPDL 1436
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 101/261 (38%), Positives = 141/261 (54%), Gaps = 4/261 (1%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAP 90
PS ++ +++ DL PS +PDL + +PD PG S +PDL S +PDL S +P
Sbjct: 1178 PSLELEVWQTATSLDLSQPSISPDLGQMALSPD-PGQESLSPDLGQTSLSPDLSQESLSP 1236
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGP 149
DL + +PD S +PDL + +PD S +PDL + +PD PG S +PDL
Sbjct: 1237 DLGQTALSPDPSQESLSPDLGQTALSPDPSQESLSPDLGQTALSPD-PGQESLSPDLGQT 1295
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
S +PDL S +PDL + +PD S +PDL + +PD S +PDL S +PDL
Sbjct: 1296 SLSPDLSQESLSPDLGQTALSPDPSQESLSPDLGQTALSPDPSQESLSPDLGQTSLSPDL 1355
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
S +PDL + +PD S +PDL S +PDL S +PDL + +PDL S +
Sbjct: 1356 GQESLSPDLGQTALSPDPSQESLSPDLGQTSLSPDLGQESLSPDLGQTALSPDLSQESLS 1415
Query: 270 PDLPGPSSAPDLPGPSSAPDL 290
PDL +PDL S +PDL
Sbjct: 1416 PDLGQTPLSPDLSLESLSPDL 1436
>gi|163040|gb|AAA30513.1| factor V [Bos taurus]
Length = 2206
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 101/259 (38%), Positives = 141/259 (54%), Gaps = 4/259 (1%)
Query: 25 LEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDL 83
LE ++ +++ DL PS +PDL + +PD PG S +PDL S +PDL S +PDL
Sbjct: 1175 LELEVWQTATSLDLSQPSISPDLGQMALSPD-PGQESLSPDLGQTSLSPDLSQESLSPDL 1233
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSS 142
+ +PD S +PDL + +PD S +PDL + +PD PG S +PDL S
Sbjct: 1234 GQTALSPDPSQESLSPDLGQTALSPDPSQESLSPDLGQTALSPD-PGQESLSPDLGQTSL 1292
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+PDL S +PDL + +PD S +PDL + +PD S +PDL S +PDL
Sbjct: 1293 SPDLSQESLSPDLGQTALSPDPSQESLSPDLGQTALSPDPSQESLSPDLGQTSLSPDLGQ 1352
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
S +PDL + +PD S +PDL S +PDL S +PDL + +PDL S +PD
Sbjct: 1353 ESLSPDLGQTALSPDPSQESLSPDLGQTSLSPDLGQESLSPDLGQTALSPDLSQESLSPD 1412
Query: 263 LPGPSSAPDLPGPSSAPDL 281
L +PDL S +PDL
Sbjct: 1413 LGQTPLSPDLSLESLSPDL 1431
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 101/261 (38%), Positives = 141/261 (54%), Gaps = 4/261 (1%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAP 90
PS ++ +++ DL PS +PDL + +PD PG S +PDL S +PDL S +P
Sbjct: 1173 PSLELEVWQTATSLDLSQPSISPDLGQMALSPD-PGQESLSPDLGQTSLSPDLSQESLSP 1231
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGP 149
DL + +PD S +PDL + +PD S +PDL + +PD PG S +PDL
Sbjct: 1232 DLGQTALSPDPSQESLSPDLGQTALSPDPSQESLSPDLGQTALSPD-PGQESLSPDLGQT 1290
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
S +PDL S +PDL + +PD S +PDL + +PD S +PDL S +PDL
Sbjct: 1291 SLSPDLSQESLSPDLGQTALSPDPSQESLSPDLGQTALSPDPSQESLSPDLGQTSLSPDL 1350
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
S +PDL + +PD S +PDL S +PDL S +PDL + +PDL S +
Sbjct: 1351 GQESLSPDLGQTALSPDPSQESLSPDLGQTSLSPDLGQESLSPDLGQTALSPDLSQESLS 1410
Query: 270 PDLPGPSSAPDLPGPSSAPDL 290
PDL +PDL S +PDL
Sbjct: 1411 PDLGQTPLSPDLSLESLSPDL 1431
>gi|296479220|tpg|DAA21335.1| TPA: coagulation factor V precursor [Bos taurus]
Length = 2128
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 101/259 (38%), Positives = 141/259 (54%), Gaps = 4/259 (1%)
Query: 25 LEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDL 83
LE ++ +++ DL PS +PDL + +PD PG S +PDL S +PDL S +PDL
Sbjct: 1180 LELEVWQTATSLDLSQPSISPDLGQMALSPD-PGQESLSPDLGQTSLSPDLSQESLSPDL 1238
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSS 142
+ +PD S +PDL + +PD S +PDL + +PD PG S +PDL S
Sbjct: 1239 GQTALSPDPSQESLSPDLGQTALSPDPSQESLSPDLGQTALSPD-PGQESLSPDLGQTSL 1297
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+PDL S +PDL + +PD S +PDL + +PD S +PDL S +PDL
Sbjct: 1298 SPDLSQESLSPDLGQTALSPDPSQESLSPDLGQTALSPDPSQESLSPDLGQTSLSPDLGQ 1357
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
S +PDL + +PD S +PDL S +PDL S +PDL + +PDL S +PD
Sbjct: 1358 ESLSPDLGQTALSPDPSQESLSPDLGQTSLSPDLGQESLSPDLGQTALSPDLSQESLSPD 1417
Query: 263 LPGPSSAPDLPGPSSAPDL 281
L +PDL S +PDL
Sbjct: 1418 LGQTPLSPDLSLESLSPDL 1436
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 101/261 (38%), Positives = 141/261 (54%), Gaps = 4/261 (1%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAP 90
PS ++ +++ DL PS +PDL + +PD PG S +PDL S +PDL S +P
Sbjct: 1178 PSLELEVWQTATSLDLSQPSISPDLGQMALSPD-PGQESLSPDLGQTSLSPDLSQESLSP 1236
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGP 149
DL + +PD S +PDL + +PD S +PDL + +PD PG S +PDL
Sbjct: 1237 DLGQTALSPDPSQESLSPDLGQTALSPDPSQESLSPDLGQTALSPD-PGQESLSPDLGQT 1295
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
S +PDL S +PDL + +PD S +PDL + +PD S +PDL S +PDL
Sbjct: 1296 SLSPDLSQESLSPDLGQTALSPDPSQESLSPDLGQTALSPDPSQESLSPDLGQTSLSPDL 1355
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
S +PDL + +PD S +PDL S +PDL S +PDL + +PDL S +
Sbjct: 1356 GQESLSPDLGQTALSPDPSQESLSPDLGQTSLSPDLGQESLSPDLGQTALSPDLSQESLS 1415
Query: 270 PDLPGPSSAPDLPGPSSAPDL 290
PDL +PDL S +PDL
Sbjct: 1416 PDLGQTPLSPDLSLESLSPDL 1436
>gi|355559021|gb|EHH15801.1| hypothetical protein EGK_01948 [Macaca mulatta]
Length = 2195
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 136/263 (51%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 91
PSS ++ + DL + +P L + +PDL + +P+L + +P L +PD
Sbjct: 1163 PSSEREVWQTVPSADLSQVTLSPQLSQTNFSPDLSHTTLSPELSQTNLSPALGQMPMSPD 1222
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
L + +PDL + +PDL + +PDL + +PDL + +PDL + +PDL +
Sbjct: 1223 LSHTTLSPDLSHTTLSPDLSHTTLSPDLSPTTLSPDLSHTTLSPDLSHTTLSPDLSPTTL 1282
Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
+PDL + +PDL + +PDL + +PDL + +PDL + +PDL + +PDL
Sbjct: 1283 SPDLSPTTLSPDLSPTTLSPDLSPTTLSPDLSHTNLSPDLSHTTLSPDLSHTTLSPDLSQ 1342
Query: 212 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 271
+ +P L +PDL + +PDL + +PDL + +PDL + +P L +PD
Sbjct: 1343 TNLSPALGQMPMSPDLSHTTLSPDLSHTNLSPDLSHTTLSPDLSQTNLSPALGQMPLSPD 1402
Query: 272 LPGPSSAPDLPGPSSAPDLPGPS 294
L + +PD+ + PDL S
Sbjct: 1403 LSQVTVSPDISETTLLPDLSQIS 1425
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 133/253 (52%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
+++ L P L + +PDL + +P+L + +P L +PDL + +PDL +
Sbjct: 1178 LSQVTLSPQLSQTNFSPDLSHTTLSPELSQTNLSPALGQMPMSPDLSHTTLSPDLSHTTL 1237
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+PDL + +PDL + +PDL + +PDL + +PDL + +PDL + +PDL
Sbjct: 1238 SPDLSHTTLSPDLSPTTLSPDLSHTTLSPDLSHTTLSPDLSPTTLSPDLSPTTLSPDLSP 1297
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
+ +PDL + +PDL + +PDL + +PDL + +PDL + +P L +PD
Sbjct: 1298 TTLSPDLSPTTLSPDLSHTNLSPDLSHTTLSPDLSHTTLSPDLSQTNLSPALGQMPMSPD 1357
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
L + +PDL + +PDL + +PDL + +P L +PDL + +PD+ +
Sbjct: 1358 LSHTTLSPDLSHTNLSPDLSHTTLSPDLSQTNLSPALGQMPLSPDLSQVTVSPDISETTL 1417
Query: 260 APDLPGPSSAPDL 272
PDL S PDL
Sbjct: 1418 LPDLSQISPPPDL 1430
>gi|260799037|ref|XP_002594506.1| hypothetical protein BRAFLDRAFT_87699 [Branchiostoma floridae]
gi|229279740|gb|EEN50517.1| hypothetical protein BRAFLDRAFT_87699 [Branchiostoma floridae]
Length = 219
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P PGP P+ PGP P+ PGP P+ PGP P+ PGP P+ PGP P+ PGP
Sbjct: 87 PKRPGPDGRPERPGPDGRPERPGPGGRPERPGPGGRPERPGPDGRPERPGPGDRPERPGP 146
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSA 143
P+ PGP P+ PGP P+ PGP P+ PGP S P++P S P++P GP+
Sbjct: 147 GDRPERPGPGDRPERPGPGDRPERPGPGGRPERPGPGS-PEVPETDSRPEIPENSGPNEY 205
Query: 144 PDL 146
PD
Sbjct: 206 PDT 208
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 63 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 122
P PGP P+ PGP P+ PGP P+ PGP P+ PGP P+ PGP P+ PGP
Sbjct: 87 PKRPGPDGRPERPGPDGRPERPGPGGRPERPGPGGRPERPGPDGRPERPGPGDRPERPGP 146
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSA 179
P+ PGP P+ PGP P+ PGP P+ PGP S P++P S P++P GP+
Sbjct: 147 GDRPERPGPGDRPERPGPGDRPERPGPGGRPERPGPGS-PEVPETDSRPEIPENSGPNEY 205
Query: 180 PDL 182
PD
Sbjct: 206 PDT 208
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 158
P PGP P+ PGP P+ PGP P+ PGP P+ PGP P+ PGP P+ PGP
Sbjct: 87 PKRPGPDGRPERPGPDGRPERPGPGGRPERPGPGGRPERPGPDGRPERPGPGDRPERPGP 146
Query: 159 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSA 215
P+ PGP P+ PGP P+ PGP P+ PGP S P++P S P++P GP+
Sbjct: 147 GDRPERPGPGDRPERPGPGDRPERPGPGGRPERPGPGS-PEVPETDSRPEIPENSGPNEY 205
Query: 216 PDL 218
PD
Sbjct: 206 PDT 208
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
P PGP P+ PGP P+ PGP P+ PGP P+ PGP P+ PGP P+ PGP
Sbjct: 87 PKRPGPDGRPERPGPDGRPERPGPGGRPERPGPGGRPERPGPDGRPERPGPGDRPERPGP 146
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSA 251
P+ PGP P+ PGP P+ PGP P+ PGP S P++P S P++P GP+
Sbjct: 147 GDRPERPGPGDRPERPGPGDRPERPGPGGRPERPGPGS-PEVPETDSRPEIPENSGPNEY 205
Query: 252 PDL 254
PD
Sbjct: 206 PDT 208
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
P PGP P+ PGP P+ PGP P+ PGP P+ PGP P+ PGP P+ PGP
Sbjct: 87 PKRPGPDGRPERPGPDGRPERPGPGGRPERPGPGGRPERPGPDGRPERPGPGDRPERPGP 146
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSA 260
P+ PGP P+ PGP P+ PGP P+ PGP S P++P S P++P GP+
Sbjct: 147 GDRPERPGPGDRPERPGPGDRPERPGPGGRPERPGPGS-PEVPETDSRPEIPENSGPNEY 205
Query: 261 PDL 263
PD
Sbjct: 206 PDT 208
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
P PGP P+ PGP P+ PGP P+ PGP P+ PGP P+ PGP P+ PGP
Sbjct: 87 PKRPGPDGRPERPGPDGRPERPGPGGRPERPGPGGRPERPGPDGRPERPGPGDRPERPGP 146
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSA 269
P+ PGP P+ PGP P+ PGP P+ PGP S P++P S P++P GP+
Sbjct: 147 GDRPERPGPGDRPERPGPGDRPERPGPGGRPERPGPGS-PEVPETDSRPEIPENSGPNEY 205
Query: 270 PDL 272
PD
Sbjct: 206 PDT 208
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 162 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 221
P PGP P+ PGP P+ PGP P+ PGP P+ PGP P+ PGP P+ PGP
Sbjct: 87 PKRPGPDGRPERPGPDGRPERPGPGGRPERPGPGGRPERPGPDGRPERPGPGDRPERPGP 146
Query: 222 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSA 278
P+ PGP P+ PGP P+ PGP P+ PGP S P++P S P++P GP+
Sbjct: 147 GDRPERPGPGDRPERPGPGDRPERPGPGGRPERPGPGS-PEVPETDSRPEIPENSGPNEY 205
Query: 279 PDL 281
PD
Sbjct: 206 PDT 208
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
P PGP P+ PGP P+ PGP P+ PGP P+ PGP P+ PGP P+ PGP
Sbjct: 87 PKRPGPDGRPERPGPDGRPERPGPGGRPERPGPGGRPERPGPDGRPERPGPGDRPERPGP 146
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSA 287
P+ PGP P+ PGP P+ PGP P+ PGP S P++P S P++P GP+
Sbjct: 147 GDRPERPGPGDRPERPGPGDRPERPGPGGRPERPGPGS-PEVPETDSRPEIPENSGPNEY 205
Query: 288 PDL 290
PD
Sbjct: 206 PDT 208
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 55/98 (56%)
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
P PGP P+ PGP P+ PGP P+ PGP P+ PGP P+ PGP P+ PGP
Sbjct: 87 PKRPGPDGRPERPGPDGRPERPGPGGRPERPGPGGRPERPGPDGRPERPGPGDRPERPGP 146
Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
P+ PGP P+ PGP P+ PGP P+ PGP S
Sbjct: 147 GDRPERPGPGDRPERPGPGDRPERPGPGGRPERPGPGS 184
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 39/72 (54%)
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
P PGP P+ PGP P+ PGP P+ PGP P+ PGP P+ PGP P+ PGP
Sbjct: 87 PKRPGPDGRPERPGPDGRPERPGPGGRPERPGPGGRPERPGPDGRPERPGPGDRPERPGP 146
Query: 285 SSAPDLPGPSST 296
P+ PGP
Sbjct: 147 GDRPERPGPGDR 158
>gi|297281480|ref|XP_001093072.2| PREDICTED: coagulation factor V [Macaca mulatta]
Length = 2191
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 134/261 (51%), Gaps = 2/261 (0%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 91
PSS ++ + DL + +P L + +PDL + +P+L + +P L +PD
Sbjct: 1158 PSSEREVWQTVPSADLSQVTLSPQLSQTNFSPDLSHTTLSPELSQTNLSPALGQMPMSPD 1217
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP--GP 149
L + +PDL + +PDL + +PDL + +PDL + +PDL + +PDL
Sbjct: 1218 LSHTTLSPDLSHTTLSPDLSHTTLSPDLSPTTLSPDLSHTTLSPDLSHTTLSPDLNLSHT 1277
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
+ +PDL + +PDL + +P L +PDL + +PDL + +PDL + +PDL
Sbjct: 1278 NLSPDLSHTTLSPDLSQTNLSPALGQMPMSPDLSHTTLSPDLSHTNLSPDLSHTTLSPDL 1337
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
+ +P L +PDL + +PDL + +PDL + +PDL + +P+L + +
Sbjct: 1338 SQTNLSPALGQMPMSPDLSHTTLSPDLSHTNLSPDLSHTTLSPDLSQTNLSPELSHTNLS 1397
Query: 270 PDLPGPSSAPDLPGPSSAPDL 290
P L +PDL + +PD+
Sbjct: 1398 PALGQMPLSPDLSQVTVSPDI 1418
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 130/255 (50%), Gaps = 7/255 (2%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
PDL + +P+L + +P L +PDL + +PDL + +PDL + +PDL
Sbjct: 1189 PDLSHTTLSPELSQTNLSPALGQMPMSPDLSHTTLSPDLSHTTLSPDLSHTTLSPDLSPT 1248
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
+ +PDL + +PDL + +PDL +L + +PDL + +PDL + +P L
Sbjct: 1249 TLSPDLSHTTLSPDLSHTTLSPDL-------NLSHTNLSPDLSHTTLSPDLSQTNLSPAL 1301
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
+PDL + +PDL + +PDL + +PDL + +P L +PDL + +
Sbjct: 1302 GQMPMSPDLSHTTLSPDLSHTNLSPDLSHTTLSPDLSQTNLSPALGQMPMSPDLSHTTLS 1361
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
PDL + +PDL + +PDL + +P+L + +P L +PDL + +PD+
Sbjct: 1362 PDLSHTNLSPDLSHTTLSPDLSQTNLSPELSHTNLSPALGQMPLSPDLSQVTVSPDISET 1421
Query: 267 SSAPDLPGPSSAPDL 281
+ PDL S PDL
Sbjct: 1422 TLLPDLSQISPPPDL 1436
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 111/214 (51%), Gaps = 2/214 (0%)
Query: 25 LEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP--GPSSAPD 82
L PDL + +PDL + +PDL + +PDL + +PDL + +PDL + +PD
Sbjct: 1223 LSPDLSHTTLSPDLSHTTLSPDLSPTTLSPDLSHTTLSPDLSHTTLSPDLNLSHTNLSPD 1282
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
L + +PDL + +P L +PDL + +PDL + +PDL + +PDL +
Sbjct: 1283 LSHTTLSPDLSQTNLSPALGQMPMSPDLSHTTLSPDLSHTNLSPDLSHTTLSPDLSQTNL 1342
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+P L +PDL + +PDL + +PDL + +PDL + +P+L + +P L
Sbjct: 1343 SPALGQMPMSPDLSHTTLSPDLSHTNLSPDLSHTTLSPDLSQTNLSPELSHTNLSPALGQ 1402
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
+PDL + +PD+ + PDL S PDL
Sbjct: 1403 MPLSPDLSQVTVSPDISETTLLPDLSQISPPPDL 1436
>gi|288870437|ref|ZP_06114100.2| hypothetical Membrane Spanning Protein [Clostridium hathewayi DSM
13479]
gi|288867183|gb|EFC99481.1| hypothetical Membrane Spanning Protein [Clostridium hathewayi DSM
13479]
Length = 474
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 85/177 (48%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
+ GP+ A GP+ A GP+ A GP+ A + GP+ A + GP+ A GP+
Sbjct: 258 VTGPTGAAGATGPTGAAGATGPTGAAGATGPTGADGVTGPTGADGVTGPTGAAGATGPTG 317
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
A GP+ A GP+ A + GP+ A + GP+ A + GP+ A GP+ A G
Sbjct: 318 AAGATGPTGAAGATGPTGAAGVTGPTGADGVTGPTGADGVTGPTGAAGATGPTGADGATG 377
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
P+ A GP+ A GP+ A GP+ A GP+ A GP+ A GP+
Sbjct: 378 PTGAAGATGPTGAAGATGPTGADGATGPTGAAGATGPTGADGATGPTGAAGATGPTG 434
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 85/177 (48%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
+ GP+ A GP+ A GP+ A GP+ A + GP+ A + GP+ A GP+
Sbjct: 258 VTGPTGAAGATGPTGAAGATGPTGAAGATGPTGADGVTGPTGADGVTGPTGAAGATGPTG 317
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
A GP+ A GP+ A + GP+ A + GP+ A + GP+ A GP+ A G
Sbjct: 318 AAGATGPTGAAGATGPTGAAGVTGPTGADGVTGPTGADGVTGPTGAAGATGPTGADGATG 377
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
P+ A GP+ A GP+ A GP+ A GP+ A GP+ A GP+
Sbjct: 378 PTGAAGATGPTGAAGATGPTGADGATGPTGAAGATGPTGADGATGPTGAAGATGPTG 434
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 85/177 (48%)
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
+ GP+ A GP+ A GP+ A GP+ A + GP+ A + GP+ A GP+
Sbjct: 258 VTGPTGAAGATGPTGAAGATGPTGAAGATGPTGADGVTGPTGADGVTGPTGAAGATGPTG 317
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
A GP+ A GP+ A + GP+ A + GP+ A + GP+ A GP+ A G
Sbjct: 318 AAGATGPTGAAGATGPTGAAGVTGPTGADGVTGPTGADGVTGPTGAAGATGPTGADGATG 377
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
P+ A GP+ A GP+ A GP+ A GP+ A GP+ A GP+
Sbjct: 378 PTGAAGATGPTGAAGATGPTGADGATGPTGAAGATGPTGADGATGPTGAAGATGPTG 434
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 85/177 (48%)
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
+ GP+ A GP+ A GP+ A GP+ A + GP+ A + GP+ A GP+
Sbjct: 258 VTGPTGAAGATGPTGAAGATGPTGAAGATGPTGADGVTGPTGADGVTGPTGAAGATGPTG 317
Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
A GP+ A GP+ A + GP+ A + GP+ A + GP+ A GP+ A G
Sbjct: 318 AAGATGPTGAAGATGPTGAAGVTGPTGADGVTGPTGADGVTGPTGAAGATGPTGADGATG 377
Query: 212 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
P+ A GP+ A GP+ A GP+ A GP+ A GP+ A GP+
Sbjct: 378 PTGAAGATGPTGAAGATGPTGADGATGPTGAAGATGPTGADGATGPTGAAGATGPTG 434
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 85/177 (48%)
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
+ GP+ A GP+ A GP+ A GP+ A + GP+ A + GP+ A GP+
Sbjct: 258 VTGPTGAAGATGPTGAAGATGPTGAAGATGPTGADGVTGPTGADGVTGPTGAAGATGPTG 317
Query: 161 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
A GP+ A GP+ A + GP+ A + GP+ A + GP+ A GP+ A G
Sbjct: 318 AAGATGPTGAAGATGPTGAAGVTGPTGADGVTGPTGADGVTGPTGAAGATGPTGADGATG 377
Query: 221 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
P+ A GP+ A GP+ A GP+ A GP+ A GP+ A GP+
Sbjct: 378 PTGAAGATGPTGAAGATGPTGADGATGPTGAAGATGPTGADGATGPTGAAGATGPTG 434
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 85/177 (48%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ GP+ A GP+ A GP+ A GP+ A + GP+ A + GP+ A GP+
Sbjct: 258 VTGPTGAAGATGPTGAAGATGPTGAAGATGPTGADGVTGPTGADGVTGPTGAAGATGPTG 317
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
A GP+ A GP+ A + GP+ A + GP+ A + GP+ A GP+ A G
Sbjct: 318 AAGATGPTGAAGATGPTGAAGVTGPTGADGVTGPTGADGVTGPTGAAGATGPTGADGATG 377
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
P+ A GP+ A GP+ A GP+ A GP+ A GP+ A GP+
Sbjct: 378 PTGAAGATGPTGAAGATGPTGADGATGPTGAAGATGPTGADGATGPTGAAGATGPTG 434
>gi|115347|sp|P27393.1|CO4A2_ASCSU RecName: Full=Collagen alpha-2(IV) chain; Flags: Precursor
gi|159649|gb|AAA18014.1| putative [Ascaris suum]
Length = 1763
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 125/317 (39%), Gaps = 48/317 (15%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 73
P + E+ L P LPG P PGP AP PG LPG AP LPG P
Sbjct: 1075 PGLMGEKGL-PGLPGKPGRPGAPGPKGLDGAPGFPGLKGEAGLPG---APGLPGQDGLPG 1130
Query: 74 LPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSS--- 124
LPG S P PG P LPG AP + G + P LPG LPG
Sbjct: 1131 LPGQKGESGFPGQPGLVGPPGLPGKMGAPGIRGEKGDAGLPGLPGERGLDGLPGQKGEAG 1190
Query: 125 ---APDLPGP------SSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPD 172
AP LPGP + AP PG P LPG P + G + P PG P
Sbjct: 1191 FPGAPGLPGPVGPKGSAGAPGFPGLKGEPGLPGLEGQPGPRGMKGEAGLPGAPGRDGLPG 1250
Query: 173 LPGPSSAPDLP--------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
LPG LP G + P LPG P LPG P PG + A +
Sbjct: 1251 LPGMKGEAGLPGLPGQPGKSITGPKGNAGLPGLPGKDGLPGLPGLKGEPGKPGYAGAAGI 1310
Query: 219 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GP 275
G P +PG P L S P G P PGP+ P LPG LP GP
Sbjct: 1311 KGEPGLPGIPGAKGEPGL---SGIPGKRGNDGIPGKPGPAGLPGLPGMKGESGLPGPQGP 1367
Query: 276 SSAPDLPGPSSAPDLPG 292
+ P LPG P LPG
Sbjct: 1368 AGLPGLPGLKGEPGLPG 1384
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 111/288 (38%), Gaps = 41/288 (14%)
Query: 27 PDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP------ 77
P LPG AP + G + P LPG LPG PG AP LPGP
Sbjct: 1150 PGLPGKMGAPGIRGEKGDAGLPGLPGERGLDGLPGQKGEAGFPG---APGLPGPVGPKGS 1206
Query: 78 SSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---- 130
+ AP PG P LPG P + G + P PG P LPG LPG
Sbjct: 1207 AGAPGFPGLKGEPGLPGLEGQPGPRGMKGEAGLPGAPGRDGLPGLPGMKGEAGLPGLPGQ 1266
Query: 131 ----------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
+ P LPG P LPG P PG + A + G P +PG P
Sbjct: 1267 PGKSITGPKGNAGLPGLPGKDGLPGLPGLKGEPGKPGYAGAAGIKGEPGLPGIPGAKGEP 1326
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
L S P G P PGP+ P LPG LPGP GP+ P LPG
Sbjct: 1327 GL---SGIPGKRGNDGIPGKPGPAGLPGLPGMKGESGLPGPQ------GPAGLPGLPGLK 1377
Query: 241 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
P LPG P G + P PG P + G S P PG AP
Sbjct: 1378 GEPGLPG---FPGQKGETGFPGQPGIPGLPGMKGDSGYPGAPGRDGAP 1422
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 114/317 (35%), Gaps = 59/317 (18%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P LPG G + P +PG AP +PG LPG P + G LPG
Sbjct: 968 PGLPGAPGQKGEQGLAGLPGIPGMKGAPGIPGAPGQDGLPG---LPGVKGDRGFNGLPGE 1024
Query: 87 SSAPD---LPGPSSAPDLPGP--------------------------SSAPDLPGPSSAP 117
P G P LPG AP L G P
Sbjct: 1025 KGEPGPAARDGEKGEPGLPGQPGLRGPQGPPGLPGLPGLKGDEGQPGYGAPGLMGEKGLP 1084
Query: 118 DLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAP 171
LPG P PGP AP PG LPG AP LPG P LPG S P
Sbjct: 1085 GLPGKPGRPGAPGPKGLDGAPGFPGLKGEAGLPG---APGLPGQDGLPGLPGQKGESGFP 1141
Query: 172 DLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
PG P LPG AP + G + P LPG LPG PG AP LP
Sbjct: 1142 GQPGLVGPPGLPGKMGAPGIRGEKGDAGLPGLPGERGLDGLPGQKGEAGFPG---APGLP 1198
Query: 229 GP------SSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAP 279
GP + AP PG P LPG P + G + P PG P LPG
Sbjct: 1199 GPVGPKGSAGAPGFPGLKGEPGLPGLEGQPGPRGMKGEAGLPGAPGRDGLPGLPGMKGEA 1258
Query: 280 DLPGPSSAPDLPGPSST 296
LPG P PG S T
Sbjct: 1259 GLPG---LPGQPGKSIT 1272
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 110/305 (36%), Gaps = 56/305 (18%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
V E L P PG P LPGP PG AP L GP+ P LPG P LPG
Sbjct: 719 VPESQLRPGPPGKDGLPGLPGPKGEAGFPG---APGLQGPAGLPGLPGMKGNPGLPG--- 772
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--------------A 125
AP L G P G + P LPG + A G P LPGP
Sbjct: 773 APGLAGLPGIPGEKGIAGKPGLPGLTGAKGEAGYPGQPGLPGPKGEPGPSTTGPPGPPGF 832
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG- 184
P L G P PG P L G P +PG LPG + AP PG P LPG
Sbjct: 833 PGLKGKDGIPGAPG---LPGLEGQRGLPGVPGQKGEIGLPGLAGAPGFPGAKGEPGLPGL 889
Query: 185 --------------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------- 220
P G P LPG S + G + P +PG
Sbjct: 890 PGKEGPQGPPGQPGAPGFPGQKGDEGLPGLPGVSG---MKGDTGLPGVPGLAGPPGQPGF 946
Query: 221 --PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 278
P PG + A G + P LPG G + P +PG AP +PG
Sbjct: 947 PGQKGQPGFPGVAGA---KGEAGLPGLPGAPGQKGEQGLAGLPGIPGMKGAPGIPGAPGQ 1003
Query: 279 PDLPG 283
LPG
Sbjct: 1004 DGLPG 1008
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 111/327 (33%), Gaps = 78/327 (23%)
Query: 14 DYLPSTVTER--PLEPDLPGP------SSAPDLPGPSSAPDLPGPSSAPD---LPGPSSA 62
D LP E P P LPGP + AP PG P LPG P + G +
Sbjct: 1180 DGLPGQKGEAGFPGAPGLPGPVGPKGSAGAPGFPGLKGEPGLPGLEGQPGPRGMKGEAGL 1239
Query: 63 PDLPGPSSAPDLPGPSSAPDLPG--------------PSSAPDLPGPSSAPDLPGPSSAP 108
P PG P LPG LPG + P LPG P LPG P
Sbjct: 1240 PGAPGRDGLPGLPGMKGEAGLPGLPGQPGKSITGPKGNAGLPGLPGKDGLPGLPGLKGEP 1299
Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 168
PG + A + G P +PG P L S P G P PGP+ P LPG
Sbjct: 1300 GKPGYAGAAGIKGEPGLPGIPGAKGEPGL---SGIPGKRGNDGIPGKPGPAGLPGLPGMK 1356
Query: 169 SAPDLPGP---SSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSAPDLP 219
LPGP + P LPG P LPG + P PG P + G S P P
Sbjct: 1357 GESGLPGPQGPAGLPGLPGLKGEPGLPGFPGQKGETGFPGQPGIPGLPGMKGDSGYPGAP 1416
Query: 220 GPSSAPDLP-----------------------GPSSAPDLPGPSSAPDLP---------- 246
G AP GP AP + G P L
Sbjct: 1417 GRDGAPGKQGEPGPMGPPGAQPIVQRGEKGEMGPMGAPGIRGEKGLPGLDGLPGPSGPPG 1476
Query: 247 --------GPSSAPDLPGPSSAPDLPG 265
G P +PG AP LPG
Sbjct: 1477 FAGAKGRDGFPGQPGMPGEKGAPGLPG 1503
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 109/335 (32%), Gaps = 83/335 (24%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------------ 85
+PG P L G P +PG LPG + AP PG P LPG
Sbjct: 841 IPGAPGLPGLEGQRGLPGVPGQKGEIGLPGLAGAPGFPGAKGEPGLPGLPGKEGPQGPPG 900
Query: 86 ---------PSSAPDLPGPSSAPDLPGPSSAPDLPG------------PSSAPDLPGPSS 124
LPG + G + P +PG P PG +
Sbjct: 901 QPGAPGFPGQKGDEGLPGLPGVSGMKGDTGLPGVPGLAGPPGQPGFPGQKGQPGFPGVAG 960
Query: 125 A------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPD----- 172
A P LPG G + P +PG AP +PG LPG P D
Sbjct: 961 AKGEAGLPGLPGAPGQKGEQGLAGLPGIPGMKGAPGIPGAPGQDGLPGLPGVKGDRGFNG 1020
Query: 173 LPGPSSAPD---LPGPSSAPDLPGP--------------------------SSAPDLPGP 203
LPG P G P LPG AP L G
Sbjct: 1021 LPGEKGEPGPAARDGEKGEPGLPGQPGLRGPQGPPGLPGLPGLKGDEGQPGYGAPGLMGE 1080
Query: 204 SSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GP 257
P LPG P PGP AP PG LPG AP LPG P LP G
Sbjct: 1081 KGLPGLPGKPGRPGAPGPKGLDGAPGFPGLKGEAGLPG---APGLPGQDGLPGLPGQKGE 1137
Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
S P PG P LPG AP + G LPG
Sbjct: 1138 SGFPGQPGLVGPPGLPGKMGAPGIRGEKGDAGLPG 1172
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 101/370 (27%), Positives = 116/370 (31%), Gaps = 99/370 (26%)
Query: 16 LPSTVTERPL--EPDLPGPSSAPDLPGPSSAPDLPGPSSAP------------------- 54
LP E+ + +P LPG + A G P LPGP P
Sbjct: 779 LPGIPGEKGIAGKPGLPGLTGAKGEAGYPGQPGLPGPKGEPGPSTTGPPGPPGFPGLKGK 838
Query: 55 -DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------- 103
+PG P L G P +PG LPG + AP PG P LPG
Sbjct: 839 DGIPGAPGLPGLEGQRGLPGVPGQKGEIGLPGLAGAPGFPGAKGEPGLPGLPGKEGPQGP 898
Query: 104 -----------PSSAPDLPGPSSAPDLPGPSSAPDLPG------------PSSAPDLPGP 140
LPG + G + P +PG P PG
Sbjct: 899 PGQPGAPGFPGQKGDEGLPGLPGVSGMKGDTGLPGVPGLAGPPGQPGFPGQKGQPGFPGV 958
Query: 141 SSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
+ A P LPG G + P +PG AP +PG LPG P + G
Sbjct: 959 AGAKGEAGLPGLPGAPGQKGEQGLAGLPGIPGMKGAPGIPGAPGQDGLPG---LPGVKGD 1015
Query: 195 SSAPDLPGPSSAPD---LPGPSSAPDLPGP--------------------------SSAP 225
LPG P G P LPG AP
Sbjct: 1016 RGFNGLPGEKGEPGPAARDGEKGEPGLPGQPGLRGPQGPPGLPGLPGLKGDEGQPGYGAP 1075
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
L G P LPG P PGP AP PG LPG AP LPG P LP
Sbjct: 1076 GLMGEKGLPGLPGKPGRPGAPGPKGLDGAPGFPGLKGEAGLPG---APGLPGQDGLPGLP 1132
Query: 283 GPSSAPDLPG 292
G PG
Sbjct: 1133 GQKGESGFPG 1142
>gi|324500170|gb|ADY40089.1| Collagen alpha-2(IV) chain [Ascaris suum]
Length = 1763
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 125/317 (39%), Gaps = 48/317 (15%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 73
P + E+ L P LPG P PGP AP PG LPG AP LPG P
Sbjct: 1075 PGLMGEKGL-PGLPGKPGRPGAPGPKGLDGAPGFPGLKGEAGLPG---APGLPGQDGLPG 1130
Query: 74 LPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSS--- 124
LPG S P PG P LPG AP + G + P LPG LPG
Sbjct: 1131 LPGQKGESGFPGQPGLVGPPGLPGKMGAPGIRGEKGDAGLPGLPGERGLDGLPGQKGEAG 1190
Query: 125 ---APDLPGP------SSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPD 172
AP LPGP + AP PG P LPG P + G + P PG P
Sbjct: 1191 FPGAPGLPGPVGPKGSAGAPGFPGLKGEPGLPGLEGQPGPRGMKGEAGLPGAPGRDGLPG 1250
Query: 173 LPGPSSAPDLP--------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
LPG LP G + P LPG P LPG P PG + A +
Sbjct: 1251 LPGMKGEAGLPGLPGQPGKSITGPKGNAGLPGLPGKDGLPGLPGLKGEPGKPGYAGAAGI 1310
Query: 219 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GP 275
G P +PG P L S P G P PGP+ P LPG LP GP
Sbjct: 1311 KGEPGLPGIPGAKGEPGL---SGIPGKRGNDGIPGKPGPAGLPGLPGMKGESGLPGPQGP 1367
Query: 276 SSAPDLPGPSSAPDLPG 292
+ P LPG P LPG
Sbjct: 1368 AGLPGLPGLKGEPGLPG 1384
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 111/288 (38%), Gaps = 41/288 (14%)
Query: 27 PDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP------ 77
P LPG AP + G + P LPG LPG PG AP LPGP
Sbjct: 1150 PGLPGKMGAPGIRGEKGDAGLPGLPGERGLDGLPGQKGEAGFPG---APGLPGPVGPKGS 1206
Query: 78 SSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---- 130
+ AP PG P LPG P + G + P PG P LPG LPG
Sbjct: 1207 AGAPGFPGLKGEPGLPGLEGQPGPRGMKGEAGLPGAPGRDGLPGLPGMKGEAGLPGLPGQ 1266
Query: 131 ----------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
+ P LPG P LPG P PG + A + G P +PG P
Sbjct: 1267 PGKSITGPKGNAGLPGLPGKDGLPGLPGLKGEPGKPGYAGAAGIKGEPGLPGIPGAKGEP 1326
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
L S P G P PGP+ P LPG LPGP GP+ P LPG
Sbjct: 1327 GL---SGIPGKRGNDGIPGKPGPAGLPGLPGMKGESGLPGPQ------GPAGLPGLPGLK 1377
Query: 241 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
P LPG P G + P PG P + G S P PG AP
Sbjct: 1378 GEPGLPG---FPGQKGETGFPGQPGIPGLPGMKGDSGYPGAPGRDGAP 1422
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 114/317 (35%), Gaps = 59/317 (18%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P LPG G + P +PG AP +PG LPG P + G LPG
Sbjct: 968 PGLPGAPGQKGEQGLAGLPGIPGMKGAPGIPGAPGQDGLPG---LPGVKGDRGFNGLPGE 1024
Query: 87 SSAPD---LPGPSSAPDLPGP--------------------------SSAPDLPGPSSAP 117
P G P LPG AP L G P
Sbjct: 1025 KGEPGPAARDGEKGEPGLPGQPGLRGPQGPPGLPGLPGLKGDEGQPGYGAPGLMGEKGLP 1084
Query: 118 DLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAP 171
LPG P PGP AP PG LPG AP LPG P LPG S P
Sbjct: 1085 GLPGKPGRPGAPGPKGLDGAPGFPGLKGEAGLPG---APGLPGQDGLPGLPGQKGESGFP 1141
Query: 172 DLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
PG P LPG AP + G + P LPG LPG PG AP LP
Sbjct: 1142 GQPGLVGPPGLPGKMGAPGIRGEKGDAGLPGLPGERGLDGLPGQKGEAGFPG---APGLP 1198
Query: 229 GP------SSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAP 279
GP + AP PG P LPG P + G + P PG P LPG
Sbjct: 1199 GPVGPKGSAGAPGFPGLKGEPGLPGLEGQPGPRGMKGEAGLPGAPGRDGLPGLPGMKGEA 1258
Query: 280 DLPGPSSAPDLPGPSST 296
LPG P PG S T
Sbjct: 1259 GLPG---LPGQPGKSIT 1272
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 111/302 (36%), Gaps = 41/302 (13%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
V E L P PG P LPGP PG AP L GP+ P LPG P LPG
Sbjct: 719 VPESQLRPGPPGKDGLPGLPGPKGEAGFPG---APGLQGPAGLPGLPGMKGNPGLPG--- 772
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--------------A 125
AP L G P G + P LPG + A G P LPGP
Sbjct: 773 APGLAGLPGIPGEKGIAGKPGLPGLTGAKGEAGYPGQPGLPGPKGEPGPSTTGPPGPPGF 832
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG- 184
P L G P PG P L G P +PG LPG + AP PG P LPG
Sbjct: 833 PGLKGKDGIPGAPG---LPGLEGQRGLPGVPGQKGESGLPGLAGAPGFPGAKGEPGLPGL 889
Query: 185 --------------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
P G P LPG S G P L GP P PG
Sbjct: 890 PGKEGPQGPPGQPGAPGFPGQKGDEGLPGLPGVSGMKGDTGLPGVPGLAGPPGQPGFPGQ 949
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
P PG + A G + P LPG G + P +PG AP +PG L
Sbjct: 950 KGQPGFPGVAGA---KGEAGLPGLPGAPGQKGEQGLAGLPGIPGMKGAPGIPGAPGQDGL 1006
Query: 291 PG 292
PG
Sbjct: 1007 PG 1008
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 113/327 (34%), Gaps = 78/327 (23%)
Query: 14 DYLPSTVTER--PLEPDLPGP------SSAPDLPGPSSAPDLPGPSSAPD---LPGPSSA 62
D LP E P P LPGP + AP PG P LPG P + G +
Sbjct: 1180 DGLPGQKGEAGFPGAPGLPGPVGPKGSAGAPGFPGLKGEPGLPGLEGQPGPRGMKGEAGL 1239
Query: 63 PDLPGPSSAPDLPGPSSAPDLPG--------------PSSAPDLPGPSSAPDLPGPSSAP 108
P PG P LPG LPG + P LPG P LPG P
Sbjct: 1240 PGAPGRDGLPGLPGMKGEAGLPGLPGQPGKSITGPKGNAGLPGLPGKDGLPGLPGLKGEP 1299
Query: 109 DLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
PG + A P LPG A PG S P G P PGP+ P LPG
Sbjct: 1300 GKPGYAGAAGIKGEPGLPGIPGAKGEPGLSGIPGKRGNDGIPGKPGPAGLPGLPGMKGES 1359
Query: 163 DLPGP---SSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSAPDLPGPS 213
LPGP + P LPG P LPG + P PG P + G S P PG
Sbjct: 1360 GLPGPQGPAGLPGLPGLKGEPGLPGFPGQKGETGFPGQPGIPGLPGMKGDSGYPGAPGRD 1419
Query: 214 SAPDLP-----------------------GPSSAPDLPGPSSAPDL------------PG 238
AP GP AP + G P L G
Sbjct: 1420 GAPGKQGEPGPMGPPGAQPIVQRGEKGEMGPMGAPGIRGEKGLPGLDGLPGPSGPPGFAG 1479
Query: 239 PSSAPDLPGPSSAPDLPGPSSAPDLPG 265
A PG P +PG AP LPG
Sbjct: 1480 AKGADGFPG---QPGMPGEKGAPGLPG 1503
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 109/335 (32%), Gaps = 83/335 (24%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------------ 85
+PG P L G P +PG LPG + AP PG P LPG
Sbjct: 841 IPGAPGLPGLEGQRGLPGVPGQKGESGLPGLAGAPGFPGAKGEPGLPGLPGKEGPQGPPG 900
Query: 86 ---------PSSAPDLPGPSSAPDLPGPSSAPDLPG------------PSSAPDLPGPSS 124
LPG + G + P +PG P PG +
Sbjct: 901 QPGAPGFPGQKGDEGLPGLPGVSGMKGDTGLPGVPGLAGPPGQPGFPGQKGQPGFPGVAG 960
Query: 125 A------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPD----- 172
A P LPG G + P +PG AP +PG LPG P D
Sbjct: 961 AKGEAGLPGLPGAPGQKGEQGLAGLPGIPGMKGAPGIPGAPGQDGLPGLPGVKGDRGFNG 1020
Query: 173 LPGPSSAPD---LPGPSSAPDLPGP--------------------------SSAPDLPGP 203
LPG P G P LPG AP L G
Sbjct: 1021 LPGEKGEPGPAARDGEKGEPGLPGQPGLRGPQGPPGLPGLPGLKGDEGQPGYGAPGLMGE 1080
Query: 204 SSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GP 257
P LPG P PGP AP PG LPG AP LPG P LP G
Sbjct: 1081 KGLPGLPGKPGRPGAPGPKGLDGAPGFPGLKGEAGLPG---APGLPGQDGLPGLPGQKGE 1137
Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
S P PG P LPG AP + G LPG
Sbjct: 1138 SGFPGQPGLVGPPGLPGKMGAPGIRGEKGDAGLPG 1172
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 101/370 (27%), Positives = 116/370 (31%), Gaps = 99/370 (26%)
Query: 16 LPSTVTERPL--EPDLPGPSSAPDLPGPSSAPDLPGPSSAP------------------- 54
LP E+ + +P LPG + A G P LPGP P
Sbjct: 779 LPGIPGEKGIAGKPGLPGLTGAKGEAGYPGQPGLPGPKGEPGPSTTGPPGPPGFPGLKGK 838
Query: 55 -DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------- 103
+PG P L G P +PG LPG + AP PG P LPG
Sbjct: 839 DGIPGAPGLPGLEGQRGLPGVPGQKGESGLPGLAGAPGFPGAKGEPGLPGLPGKEGPQGP 898
Query: 104 -----------PSSAPDLPGPSSAPDLPGPSSAPDLPG------------PSSAPDLPGP 140
LPG + G + P +PG P PG
Sbjct: 899 PGQPGAPGFPGQKGDEGLPGLPGVSGMKGDTGLPGVPGLAGPPGQPGFPGQKGQPGFPGV 958
Query: 141 SSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
+ A P LPG G + P +PG AP +PG LPG P + G
Sbjct: 959 AGAKGEAGLPGLPGAPGQKGEQGLAGLPGIPGMKGAPGIPGAPGQDGLPG---LPGVKGD 1015
Query: 195 SSAPDLPGPSSAPD---LPGPSSAPDLPGP--------------------------SSAP 225
LPG P G P LPG AP
Sbjct: 1016 RGFNGLPGEKGEPGPAARDGEKGEPGLPGQPGLRGPQGPPGLPGLPGLKGDEGQPGYGAP 1075
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
L G P LPG P PGP AP PG LPG AP LPG P LP
Sbjct: 1076 GLMGEKGLPGLPGKPGRPGAPGPKGLDGAPGFPGLKGEAGLPG---APGLPGQDGLPGLP 1132
Query: 283 GPSSAPDLPG 292
G PG
Sbjct: 1133 GQKGESGFPG 1142
>gi|358420873|ref|XP_003584752.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC789503
[Bos taurus]
Length = 6915
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 123/287 (42%), Gaps = 10/287 (3%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
TER P +PGP+S S+ +PGPSS S+ +PGPSS S+
Sbjct: 4895 TERVSTPTSVPGPTSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVST 4954
Query: 80 APDLPGPSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
A + GPSS +PG SS S++ + GPSS S+ + G
Sbjct: 4955 ATSVTGPSSIATTERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTG 5014
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
PSS + G S+ + GPSS S+ + GPSS S+ + GPSS
Sbjct: 5015 PSSTVTIEGVSTPTSVTGPSSTVTTERTSTPTSVTGPSSTATTEKVSTPTSVTGPSSTAT 5074
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
S+ + GPSS G S+ + GPSS S+ + GPSS S+
Sbjct: 5075 TERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVST 5134
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+ GPSS S+ + GPSS S+ +PGPSSTV
Sbjct: 5135 PTSVTGPSSTATTERTSTPTSVMGPSSMVTTERVSTPMSVPGPSSTV 5181
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 124/291 (42%), Gaps = 11/291 (3%)
Query: 18 STVT-ERPLEP-DLPGPSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 66
STVT ER P +PGPSS +PGPSS S+A + GPSS
Sbjct: 4909 STVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVSTATSVTGPSSIATTE 4968
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
+ +PG SS S++ + GPSS S+ + GPSS + G S+
Sbjct: 4969 RVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTGPSSTVTIEGVSTPT 5028
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
+ GPSS S+ + GPSS S+ + GPSS S+ + GPS
Sbjct: 5029 SVTGPSSTVTTERTSTPTSVTGPSSTATTEKVSTPTSVTGPSSTATTERTSTPTSVTGPS 5088
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
S G S+ + GPSS S+ + GPSS S+ + GPSS
Sbjct: 5089 STVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVTGPSSTATTE 5148
Query: 247 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
S+ + GPSS S+ +PGPSS S+ +P PSSTV
Sbjct: 5149 RTSTPTSVMGPSSMVTTERVSTPMSVPGPSSTVTTERVSTPTSVPEPSSTV 5199
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 127/305 (41%), Gaps = 28/305 (9%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
TER P + GPSS G S+ + GPSS S+ + G SS S+
Sbjct: 5471 TERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGSSSTATTERVST 5530
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--------AP-DLPG 130
+ GPSS S+ +PGPSS S+ +PGPSS P + G
Sbjct: 5531 PTSVMGPSSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSPVITERVSTPTSVTG 5590
Query: 131 PSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
PSS +PG SS S++ + GPSS S+ + GPSS
Sbjct: 5591 PSSIATTERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTGPSSTVT 5650
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
G S+ + GPSS S+ + GPSS S+ +PGP+S S+
Sbjct: 5651 TEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVPGPTSTVTTERVST 5710
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---------PDLPG 292
+PGPSS S+ +PGPSS S+A + GPSS +PG
Sbjct: 5711 PTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVSTATSVTGPSSIATTERVYTPTSMPG 5770
Query: 293 PSSTV 297
PSSTV
Sbjct: 5771 PSSTV 5775
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 124/292 (42%), Gaps = 13/292 (4%)
Query: 18 STVTERPLEP--DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
STVT + + GPSS G S+ + GPSS S+ + GPSS
Sbjct: 5431 STVTTEKVSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTVTTE 5490
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G S+ + GPSS S+ + G SS S+ + GPSS S+
Sbjct: 5491 GVSTPTSVTGPSSTATTERTSTPTSVTGSSSTATTERVSTPTSVMGPSSTVTTERVSTPT 5550
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA---------PDLPGP 185
+PGPSS S+ +PGPSS P + S P + GPSS +PG
Sbjct: 5551 SVPGPSSTVTTERVSTPTSVPGPSS-PVITERVSTPTSVTGPSSIATTERVYTPTSVPGS 5609
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
SS S++ + GPSS S+ + GPSS G S+ + GPSS
Sbjct: 5610 SSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATT 5669
Query: 246 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
S+ + GPSS S+ +PGP+S S+ +PGPSSTV
Sbjct: 5670 ERTSTPTSVTGPSSTATTERVSTPTSVPGPTSTVTTERVSTPTSVPGPSSTV 5721
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 122/287 (42%), Gaps = 11/287 (3%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+ GPSS S+ + GPSS G S+ + GPSS S+ + G SS
Sbjct: 5462 VTGPSSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGSSS 5521
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
S+ + GPSS S+ +PGPSS S+ +PGPSS P +
Sbjct: 5522 TATTERVSTPTSVMGPSSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSS-PVITE 5580
Query: 149 PSSAP-DLPGPSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
S P + GPSS +PG SS S++ + GPSS S+
Sbjct: 5581 RVSTPTSVTGPSSIATTERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPT 5640
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
+ GPSS G S+ + GPSS S+ + GPSS S+ +PGP+
Sbjct: 5641 SVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVPGPT 5700
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEA 305
S S+ +PGPSS S+ +PGPSSTV+ + A
Sbjct: 5701 STVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVSTA 5747
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 120/290 (41%), Gaps = 11/290 (3%)
Query: 18 STVT-ERPLEP-DLPGPSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 66
STVT ER P +PGPSS +PGPSS S+A + GPSS
Sbjct: 4495 STVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVSTATSVTGPSSIATTE 4554
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
+ +PG SS S++ + GPSS S+ + GPSS SS
Sbjct: 4555 RVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTGPSSTATTEKVSSPT 4614
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
+ GPSS S+ + GPSS S+ + GPSS S+ +PG S
Sbjct: 4615 SVTGPSSTATTERTSTPTSVTGPSSTATTEKVSTPTSVTGPSSTATTERVSTPTSVPGSS 4674
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
S S+ + GPSS + S+ + GPSS S+ + G SS
Sbjct: 4675 STVTTERTSTHTSVTGPSSTVTMERTSTPTSVTGPSSTATTEKVSTPTSVTGLSSTVTTE 4734
Query: 247 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
G S+ + PSS S+ + GPSS G S+ + GPSST
Sbjct: 4735 GVSTPTSVTRPSSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSST 4784
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 118/287 (41%), Gaps = 10/287 (3%)
Query: 21 TERPLEP-DLPGPSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 70
TER P +PGP+S +PGPSS S+ +PGPSS S+
Sbjct: 4481 TERVSTPTSVPGPTSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVST 4540
Query: 71 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
A + GPSS + +PG SS S++ + GPSS S+ + G
Sbjct: 4541 ATSVTGPSSIATTERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTG 4600
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
PSS SS + GPSS S+ + GPSS S+ + GPSS
Sbjct: 4601 PSSTATTEKVSSPTSVTGPSSTATTERTSTPTSVTGPSSTATTEKVSTPTSVTGPSSTAT 4660
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
S+ +PG SS S+ + GPSS + S+ + GPSS S+
Sbjct: 4661 TERVSTPTSVPGSSSTVTTERTSTHTSVTGPSSTVTMERTSTPTSVTGPSSTATTEKVST 4720
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+ G SS G S+ + PSS S+ + GPSSTV
Sbjct: 4721 PTSVTGLSSTVTTEGVSTPTSVTRPSSTATTERTSTPTSVTGPSSTV 4767
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 123/288 (42%), Gaps = 2/288 (0%)
Query: 11 TEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 70
TE P++VT S+ + GPSS S+ +PGPSS S+
Sbjct: 5507 TERTSTPTSVTGSSSTATTERVSTPTSVMGPSSTVTTERVSTPTSVPGPSSTVTTERVST 5566
Query: 71 APDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
+PGPSS P + S P + GPSS + +PG SS S++ +
Sbjct: 5567 PTSVPGPSS-PVITERVSTPTSVTGPSSIATTERVYTPTSVPGSSSRVTSAAVSTSTSVT 5625
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
GPSS S+ + GPSS G S+ + GPSS S+ + GPSS
Sbjct: 5626 GPSSMVTTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTA 5685
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
S+ +PGP+S S+ +PGPSS S+ +PGPSS S
Sbjct: 5686 TTERVSTPTSVPGPTSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVS 5745
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+A + GPSS + +PGPSS S++ + GPSS V
Sbjct: 5746 TATSVTGPSSIATTERVYTPTSMPGPSSTVTSAAVSTSTSVTGPSSMV 5793
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 121/287 (42%), Gaps = 12/287 (4%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
TER P +PG SS S+ + PSS + S++ + GPSS S+
Sbjct: 5381 TERVSTPTSVPGSSSTATTERTSTHTSVTVPSSTVTMERTSTSTSVTGPSSTVTTEKVST 5440
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+ GPSS G S+ + GPSS S+ + GPSS G S+ + G
Sbjct: 5441 PTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTG 5500
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
PSS S+ + G SS S+ + GPSS S+ +PGPSS
Sbjct: 5501 PSSTATTERTSTPTSVTGSSSTATTERVSTPTSVMGPSSTVTTERVSTPTSVPGPSSTVT 5560
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA---------PDLPGPSSAPDLPGPS 249
S+ +PGPSS P + S P + GPSS +PG SS S
Sbjct: 5561 TERVSTPTSVPGPSS-PVITERVSTPTSVTGPSSIATTERVYTPTSVPGSSSRVTSAAVS 5619
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
++ + GPSS S+ + GPSS G S+ + GPSST
Sbjct: 5620 TSTSVTGPSSMVTTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSST 5666
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 123/287 (42%), Gaps = 12/287 (4%)
Query: 21 TERPLEP-DLPGPSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 70
TER P + GPSS +PGPSS S+ +PGPSS P + S
Sbjct: 5525 TERVSTPTSVMGPSSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSS-PVITERVS 5583
Query: 71 AP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
P + GPSS + +PG SS S++ + GPSS S+ +
Sbjct: 5584 TPTSVTGPSSIATTERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVT 5643
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
GPSS G S+ + GPSS S+ + GPSS S+ +PGP+S
Sbjct: 5644 GPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVPGPTSTV 5703
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
S+ +PGPSS S+ +PGPSS S+A + GPSS
Sbjct: 5704 TTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVSTATSVTGPSSIATTERVY 5763
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
+ +PGPSS S++ + GPSS S+ + GPSST
Sbjct: 5764 TPTSMPGPSSTVTSAAVSTSTSVTGPSSMVTTERTSTRTSVTGPSST 5810
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 122/308 (39%), Gaps = 29/308 (9%)
Query: 18 STVT-ERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---- 71
STVT ER P LPGPSS S+ + GPSS S+ + GPSS
Sbjct: 4405 STVTTERVSTPMSLPGPSSMVTSGVVSTTTSVTGPSSKATTKRVSTRTSVTGPSSMVTTK 4464
Query: 72 -----------------------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 108
+PGP+S S+ +PGPSS S+
Sbjct: 4465 RTSTSTSVTGPSSTATTERVSTPTSVPGPTSTVTTERVSTPTSVPGPSSTVTTERVSTPT 4524
Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 168
+PGPSS S+A + GPSS + +PG SS S++ + GPS
Sbjct: 4525 SVPGPSSTVITERVSTATSVTGPSSIATTERVYTPTSVPGSSSRVTSAAVSTSTSVTGPS 4584
Query: 169 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
S S+ + GPSS SS + GPSS S+ + GPSS
Sbjct: 4585 SMVTTERTSTPTSVTGPSSTATTEKVSSPTSVTGPSSTATTERTSTPTSVTGPSSTATTE 4644
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
S+ + GPSS S+ +PG SS S+ + GPSS + S+
Sbjct: 4645 KVSTPTSVTGPSSTATTERVSTPTSVPGSSSTVTTERTSTHTSVTGPSSTVTMERTSTPT 4704
Query: 289 DLPGPSST 296
+ GPSST
Sbjct: 4705 SVTGPSST 4712
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 114/277 (41%), Gaps = 9/277 (3%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---------PDLPGPSS 79
+ GPSS S+ + GPSS S+ + GPSS +PGPSS
Sbjct: 5228 VTGPSSTVTTEAVSTPTSVTGPSSTATTERTSTPTSVTGPSSIATTERVYTPTSMPGPSS 5287
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
S++ + GPSS S+ + GPSS S+ + G SS
Sbjct: 5288 TVTSAAVSTSTSVTGPSSMVTTERTSTRTSVTGPSSTATTERVSTPTSVTGLSSMVTTER 5347
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
S+ +PGPSS S+ + GPSS S+ +PG SS S+
Sbjct: 5348 TSTPTSVPGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVPGSSSTATTERTSTHTS 5407
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
+ PSS + S++ + GPSS S+ + GPSS G S+ + GPSS
Sbjct: 5408 VTVPSSTVTMERTSTSTSVTGPSSTVTTEKVSTPTSVTGPSSTVTTEGVSTPTSVTGPSS 5467
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
S+ + GPSS G S+ + GPSST
Sbjct: 5468 TATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSST 5504
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 117/295 (39%), Gaps = 27/295 (9%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA----------------- 71
+ GPSS G S+ + GPSS S+ + GPSS
Sbjct: 4832 VTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSMVTTKRTSTSTSVTGPSS 4891
Query: 72 ----------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 121
+PGP+S S+ +PGPSS S+ +PGPSS
Sbjct: 4892 TATTERVSTPTSVPGPTSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITER 4951
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
S+A + GPSS + +PG SS S++ + GPSS S+
Sbjct: 4952 VSTATSVTGPSSIATTERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTS 5011
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
+ GPSS + G S+ + GPSS S+ + GPSS S+ + GPSS
Sbjct: 5012 VTGPSSTVTIEGVSTPTSVTGPSSTVTTERTSTPTSVTGPSSTATTEKVSTPTSVTGPSS 5071
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
S+ + GPSS G S+ + GPSS S+ + GPSST
Sbjct: 5072 TATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSST 5126
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 121/297 (40%), Gaps = 18/297 (6%)
Query: 9 VFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSA---------PDLPGP 59
V TEA P++VT GPSS S+ + GPSS +PGP
Sbjct: 5235 VTTEAVSTPTSVT---------GPSSTATTERTSTPTSVTGPSSIATTERVYTPTSMPGP 5285
Query: 60 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 119
SS S++ + GPSS S+ + GPSS S+ + G SS
Sbjct: 5286 SSTVTSAAVSTSTSVTGPSSMVTTERTSTRTSVTGPSSTATTERVSTPTSVTGLSSMVTT 5345
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
S+ +PGPSS S+ + GPSS S+ +PG SS S+
Sbjct: 5346 ERTSTPTSVPGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVPGSSSTATTERTSTH 5405
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
+ PSS + S++ + GPSS S+ + GPSS G S+ + GP
Sbjct: 5406 TSVTVPSSTVTMERTSTSTSVTGPSSTVTTEKVSTPTSVTGPSSTVTTEGVSTPTSVTGP 5465
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
SS S+ + GPSS G S+ + GPSS S+ + G SST
Sbjct: 5466 SSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGSSST 5522
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 119/290 (41%), Gaps = 11/290 (3%)
Query: 18 STVT-ERPLEP-DLPGPSS---------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 66
STVT ER P +PGPSS A + GPSS + +PG SS
Sbjct: 4513 STVTTERVSTPTSVPGPSSTVITERVSTATSVTGPSSIATTERVYTPTSVPGSSSRVTSA 4572
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
S++ + GPSS S+ + GPSS SS + GPSS S+
Sbjct: 4573 AVSTSTSVTGPSSMVTTERTSTPTSVTGPSSTATTEKVSSPTSVTGPSSTATTERTSTPT 4632
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
+ GPSS S+ + GPSS S+ +PG SS S+ + GPS
Sbjct: 4633 SVTGPSSTATTEKVSTPTSVTGPSSTATTERVSTPTSVPGSSSTVTTERTSTHTSVTGPS 4692
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
S + S+ + GPSS S+ + G SS G S+ + PSS
Sbjct: 4693 STVTMERTSTPTSVTGPSSTATTEKVSTPTSVTGLSSTVTTEGVSTPTSVTRPSSTATTE 4752
Query: 247 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
S+ + GPSS G S+ + GPSS S+ + GPSST
Sbjct: 4753 RTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSST 4802
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 121/311 (38%), Gaps = 29/311 (9%)
Query: 16 LPSTVTERPLE--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 73
L STVT + + GPSS S+ LPGPSS S+ + GPSS
Sbjct: 4385 LSSTVTTGRVSIPTSVTGPSSTVTTERVSTPMSLPGPSSMVTSGVVSTTTSVTGPSSKAT 4444
Query: 74 LPGPSSAPDLPGPSSA---------------------------PDLPGPSSAPDLPGPSS 106
S+ + GPSS +PGP+S S+
Sbjct: 4445 TKRVSTRTSVTGPSSMVTTKRTSTSTSVTGPSSTATTERVSTPTSVPGPTSTVTTERVST 4504
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
+PGPSS S+ +PGPSS S+A + GPSS + +PG
Sbjct: 4505 PTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVSTATSVTGPSSIATTERVYTPTSVPG 4564
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 226
SS S++ + GPSS S+ + GPSS SS + GPSS
Sbjct: 4565 SSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTGPSSTATTEKVSSPTSVTGPSSTAT 4624
Query: 227 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
S+ + GPSS S+ + GPSS S+ +PG SS S+
Sbjct: 4625 TERTSTPTSVTGPSSTATTEKVSTPTSVTGPSSTATTERVSTPTSVPGSSSTVTTERTST 4684
Query: 287 APDLPGPSSTV 297
+ GPSSTV
Sbjct: 4685 HTSVTGPSSTV 4695
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 120/288 (41%), Gaps = 12/288 (4%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
TER P + GPSS S+ +PG SS S+ + PSS + S+
Sbjct: 5363 TERTSTPTSVTGPSSTATTERVSTPTSVPGSSSTATTERTSTHTSVTVPSSTVTMERTST 5422
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+ + GPSS S+ + GPSS G S+ + GPSS S+ + G
Sbjct: 5423 STSVTGPSSTVTTEKVSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTG 5482
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-- 197
PSS G S+ + GPSS S+ + G SS S+ + GPSS
Sbjct: 5483 PSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGSSSTATTERVSTPTSVMGPSSTVT 5542
Query: 198 -------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPS 249
+PGPSS S+ +PGPSS P + S P + GPSS
Sbjct: 5543 TERVSTPTSVPGPSSTVTTERVSTPTSVPGPSS-PVITERVSTPTSVTGPSSIATTERVY 5601
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+ +PG SS S++ + GPSS S+ + GPSSTV
Sbjct: 5602 TPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTGPSSTV 5649
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 125/292 (42%), Gaps = 13/292 (4%)
Query: 18 STVT-ERPLEP-DLPGPSSA---------PDLPGPSSAPDLPGPSSAP-DLPGPSSAPDL 65
STVT ER P +PGPSS +PGPSS P + S P + GPSS
Sbjct: 5539 STVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSS-PVITERVSTPTSVTGPSSIATT 5597
Query: 66 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
+ +PG SS S++ + GPSS S+ + GPSS G S+
Sbjct: 5598 ERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTGPSSTVTTEGVSTP 5657
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
+ GPSS S+ + GPSS S+ +PGP+S S+ +PGP
Sbjct: 5658 TSVTGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVPGPTSTVTTERVSTPTSVPGP 5717
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
SS S+ +PGPSS S+A + GPSS + +PGPSS
Sbjct: 5718 SSTVTTERVSTPTSVPGPSSTVITERVSTATSVTGPSSIATTERVYTPTSMPGPSSTVTS 5777
Query: 246 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
S++ + GPSS S+ + GPSS S+ + G SS V
Sbjct: 5778 AAVSTSTSVTGPSSMVTTERTSTRTSVTGPSSTATTERVSTPTSVTGLSSMV 5829
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 119/303 (39%), Gaps = 28/303 (9%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-------- 71
TER P +PGPSS S++ + GPSS S+ + GPSS
Sbjct: 5273 TERVYTPTSMPGPSSTVTSAAVSTSTSVTGPSSMVTTERTSTRTSVTGPSSTATTERVST 5332
Query: 72 -------------------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 112
+PGPSS S+ + GPSS S+ +PG
Sbjct: 5333 PTSVTGLSSMVTTERTSTPTSVPGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVPG 5392
Query: 113 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 172
SS S+ + PSS + S++ + GPSS S+ + GPSS
Sbjct: 5393 SSSTATTERTSTHTSVTVPSSTVTMERTSTSTSVTGPSSTVTTEKVSTPTSVTGPSSTVT 5452
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
G S+ + GPSS S+ + GPSS G S+ + GPSS S+
Sbjct: 5453 TEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTST 5512
Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+ G SS S+ + GPSS S+ +PGPSS S+ +PG
Sbjct: 5513 PTSVTGSSSTATTERVSTPTSVMGPSSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPG 5572
Query: 293 PSS 295
PSS
Sbjct: 5573 PSS 5575
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 108/260 (41%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 97
+ GPSS S+ + GPSS S+ + GPSS + +PGPSS
Sbjct: 5228 VTGPSSTVTTEAVSTPTSVTGPSSTATTERTSTPTSVTGPSSIATTERVYTPTSMPGPSS 5287
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
S++ + GPSS S+ + GPSS S+ + G SS
Sbjct: 5288 TVTSAAVSTSTSVTGPSSMVTTERTSTRTSVTGPSSTATTERVSTPTSVTGLSSMVTTER 5347
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
S+ +PGPSS S+ + GPSS S+ +PG SS S+
Sbjct: 5348 TSTPTSVPGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVPGSSSTATTERTSTHTS 5407
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
+ PSS + S++ + GPSS S+ + GPSS G S+ + GPSS
Sbjct: 5408 VTVPSSTVTMERTSTSTSVTGPSSTVTTEKVSTPTSVTGPSSTVTTEGVSTPTSVTGPSS 5467
Query: 278 APDLPGPSSAPDLPGPSSTV 297
S+ + GPSSTV
Sbjct: 5468 TATTERTSTPTSVTGPSSTV 5487
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 119/287 (41%), Gaps = 18/287 (6%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+ S++ + GPSS S+ + GPSS G S+ + GPSS S+
Sbjct: 5417 MERTSTSTSVTGPSSTVTTEKVSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTST 5476
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
+ GPSS G S+ + GPSS S+ + G SS S+ + G
Sbjct: 5477 PTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGSSSTATTERVSTPTSVMG 5536
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--------SAP-DLPGPSSA-- 197
PSS S+ +PGPSS S+ +PGPS S P + GPSS
Sbjct: 5537 PSSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSPVITERVSTPTSVTGPSSIAT 5596
Query: 198 -------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
+PG SS S++ + GPSS S+ + GPSS G S+
Sbjct: 5597 TERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTGPSSTVTTEGVST 5656
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+ GPSS S+ + GPSS S+ +PGP+STV
Sbjct: 5657 PTSVTGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVPGPTSTV 5703
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 119/287 (41%), Gaps = 10/287 (3%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
TER P + GPSS + G S+ + GPSS S+ + GPSS S+
Sbjct: 5003 TERTSTPTSVTGPSSTVTIEGVSTPTSVTGPSSTVTTERTSTPTSVTGPSSTATTEKVST 5062
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+ GPSS S+ + GPSS G S+ + GPSS S+ + G
Sbjct: 5063 PTSVTGPSSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTG 5122
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
PSS S+ + GPSS S+ + GPSS S+ +PGPSS
Sbjct: 5123 PSSTATTERVSTPTSVTGPSSTATTERTSTPTSVMGPSSMVTTERVSTPMSVPGPSSTVT 5182
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
S+ +P PSS S+ + GPSS S+ + GPSS S+
Sbjct: 5183 TERVSTPTSVPEPSSTVTTERFSTPTSVTGPSSTETTERTSTPTSVTGPSSTVTTEAVST 5242
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSA---------PDLPGPSSTV 297
+ GPSS S+ + GPSS +PGPSSTV
Sbjct: 5243 PTSVTGPSSTATTERTSTPTSVTGPSSIATTERVYTPTSMPGPSSTV 5289
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 116/287 (40%), Gaps = 10/287 (3%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
TER P +PG SS S++ + GPSS S+ + GPSS SS
Sbjct: 4553 TERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTGPSSTATTEKVSS 4612
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+ GPSS S+ + GPSS S+ + GPSS S+ +PG
Sbjct: 4613 PTSVTGPSSTATTERTSTPTSVTGPSSTATTEKVSTPTSVTGPSSTATTERVSTPTSVPG 4672
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
SS S+ + GPSS + S+ + GPSS S+ + G SS
Sbjct: 4673 SSSTVTTERTSTHTSVTGPSSTVTMERTSTPTSVTGPSSTATTEKVSTPTSVTGLSSTVT 4732
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
G S+ + PSS S+ + GPSS G S+ + GPSS S+
Sbjct: 4733 TEGVSTPTSVTRPSSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTST 4792
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSAPD---------LPGPSSTV 297
+ GPSS S+ + GPSS + GPSSTV
Sbjct: 4793 PTSVTGPSSTATTERVSTPTSVTGPSSTATTERTSTRTSVTGPSSTV 4839
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 121/304 (39%), Gaps = 28/304 (9%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
TER P + GPSS G S+ + GPSS S+ + GPSS S+
Sbjct: 4751 TERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVST 4810
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+ GPSS S+ + GPSS G S+ + GPSS S+ + G
Sbjct: 4811 PTSVTGPSSTATTERTSTRTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTG 4870
Query: 140 PSSA---------------------------PDLPGPSSAPDLPGPSSAPDLPGPSSAPD 172
PSS +PGP+S S+ +PGPSS
Sbjct: 4871 PSSMVTTKRTSTSTSVTGPSSTATTERVSTPTSVPGPTSTVTTERVSTPTSVPGPSSTVT 4930
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
S+ +PGPSS S+A + GPSS + +PG SS S+
Sbjct: 4931 TERVSTPTSVPGPSSTVITERVSTATSVTGPSSIATTERVYTPTSVPGSSSRVTSAAVST 4990
Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+ + GPSS S+ + GPSS + G S+ + GPSS S+ + G
Sbjct: 4991 STSVTGPSSMVTTERTSTPTSVTGPSSTVTIEGVSTPTSVTGPSSTVTTERTSTPTSVTG 5050
Query: 293 PSST 296
PSST
Sbjct: 5051 PSST 5054
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 110/261 (42%), Gaps = 2/261 (0%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 97
+PGPSS S+ + GPSS S+ +PG SS S+ + PSS
Sbjct: 5354 VPGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVPGSSSTATTERTSTHTSVTVPSS 5413
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
+ S++ + GPSS S+ + GPSS G S+ + GPSS
Sbjct: 5414 TVTMERTSTSTSVTGPSSTVTTEKVSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTER 5473
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
S+ + GPSS G S+ + GPSS S+ + G SS S+
Sbjct: 5474 TSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGSSSTATTERVSTPTS 5533
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPS 276
+ GPSS S+ +PGPSS S+ +PGPSS P + S P + GPS
Sbjct: 5534 VMGPSSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSS-PVITERVSTPTSVTGPS 5592
Query: 277 SAPDLPGPSSAPDLPGPSSTV 297
S + +PG SS V
Sbjct: 5593 SIATTERVYTPTSVPGSSSRV 5613
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 121/305 (39%), Gaps = 28/305 (9%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
TER P + GPSS S+ + GPSS S+ + GPSS G S+
Sbjct: 4787 TERTSTPTSVTGPSSTATTERVSTPTSVTGPSSTATTERTSTRTSVTGPSSTVTTEGVST 4846
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSA---------------------------PDLPG 112
+ GPSS S+ + GPSS +PG
Sbjct: 4847 PTSVTGPSSTATTERTSTPTSVTGPSSMVTTKRTSTSTSVTGPSSTATTERVSTPTSVPG 4906
Query: 113 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 172
P+S S+ +PGPSS S+ +PGPSS S+A + GPSS
Sbjct: 4907 PTSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVSTATSVTGPSSIAT 4966
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
+ +PG SS S++ + GPSS S+ + GPSS + G S+
Sbjct: 4967 TERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTGPSSTVTIEGVST 5026
Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+ GPSS S+ + GPSS S+ + GPSS S+ + G
Sbjct: 5027 PTSVTGPSSTVTTERTSTPTSVTGPSSTATTEKVSTPTSVTGPSSTATTERTSTPTSVTG 5086
Query: 293 PSSTV 297
PSSTV
Sbjct: 5087 PSSTV 5091
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 118/286 (41%), Gaps = 10/286 (3%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
TER P +PG SS S++ + GPSS S+ + GPSS + G S+
Sbjct: 4967 TERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTGPSSTVTIEGVST 5026
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+ GPSS S+ + GPSS S+ + GPSS S+ + G
Sbjct: 5027 PTSVTGPSSTVTTERTSTPTSVTGPSSTATTEKVSTPTSVTGPSSTATTERTSTPTSVTG 5086
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
PSS G S+ + GPSS S+ + GPSS S+ + GPSS
Sbjct: 5087 PSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVTGPSSTAT 5146
Query: 200 LPGPSSAPDLPGPSSAP---------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
S+ + GPSS +PGPSS S+ +P PSS S+
Sbjct: 5147 TERTSTPTSVMGPSSMVTTERVSTPMSVPGPSSTVTTERVSTPTSVPEPSSTVTTERFST 5206
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
+ GPSS S+ + GPSS S+ + GPSST
Sbjct: 5207 PTSVTGPSSTETTERTSTPTSVTGPSSTVTTEAVSTPTSVTGPSST 5252
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 120/290 (41%), Gaps = 10/290 (3%)
Query: 18 STVTER-PLEPDLPGPSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 67
+ +TER + GPSS +PG SS S++ + GPSS
Sbjct: 4946 TVITERVSTATSVTGPSSIATTERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTER 5005
Query: 68 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 127
S+ + GPSS + G S+ + GPSS S+ + GPSS S+
Sbjct: 5006 TSTPTSVTGPSSTVTIEGVSTPTSVTGPSSTVTTERTSTPTSVTGPSSTATTEKVSTPTS 5065
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
+ GPSS S+ + GPSS G S+ + GPSS S+ + GPSS
Sbjct: 5066 VTGPSSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSS 5125
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
S+ + GPSS S+ + GPSS S+ +PGPSS
Sbjct: 5126 TATTERVSTPTSVTGPSSTATTERTSTPTSVMGPSSMVTTERVSTPMSVPGPSSTVTTER 5185
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
S+ +P PSS S+ + GPSS S+ + GPSSTV
Sbjct: 5186 VSTPTSVPEPSSTVTTERFSTPTSVTGPSSTETTERTSTPTSVTGPSSTV 5235
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 115/287 (40%), Gaps = 10/287 (3%)
Query: 21 TERPLEP-DLPGPSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 70
TER P + GPSS + GPSS S+ + GPSS S+
Sbjct: 4589 TERTSTPTSVTGPSSTATTEKVSSPTSVTGPSSTATTERTSTPTSVTGPSSTATTEKVST 4648
Query: 71 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
+ GPSS S+ +PG SS S+ + GPSS + S+ + G
Sbjct: 4649 PTSVTGPSSTATTERVSTPTSVPGSSSTVTTERTSTHTSVTGPSSTVTMERTSTPTSVTG 4708
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
PSS S+ + G SS G S+ + PSS S+ + GPSS
Sbjct: 4709 PSSTATTEKVSTPTSVTGLSSTVTTEGVSTPTSVTRPSSTATTERTSTPTSVTGPSSTVT 4768
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
G S+ + GPSS S+ + GPSS S+ + GPSS S+
Sbjct: 4769 TEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVTGPSSTATTERTST 4828
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+ GPSS G S+ + GPSS S+ + GPSS V
Sbjct: 4829 RTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSMV 4875
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 118/304 (38%), Gaps = 27/304 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+ GPSS S+ +PG SS S+ + GPSS + S+ + GPSS
Sbjct: 4652 VTGPSSTATTERVSTPTSVPGSSSTVTTERTSTHTSVTGPSSTVTMERTSTPTSVTGPSS 4711
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
S+ + G SS G S+ + PSS S+ + GPSS G
Sbjct: 4712 TATTEKVSTPTSVTGLSSTVTTEGVSTPTSVTRPSSTATTERTSTPTSVTGPSSTVTTEG 4771
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
S+ + GPSS S+ + GPSS S+ + GPSS S+
Sbjct: 4772 VSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVTGPSSTATTERTSTRTS 4831
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA----------------- 251
+ GPSS G S+ + GPSS S+ + GPSS
Sbjct: 4832 VTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSMVTTKRTSTSTSVTGPSS 4891
Query: 252 ----------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSY 301
+PGP+S S+ +PGPSS S+ +PGPSSTV+
Sbjct: 4892 TATTERVSTPTSVPGPTSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITER 4951
Query: 302 LGEA 305
+ A
Sbjct: 4952 VSTA 4955
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 118/303 (38%), Gaps = 28/303 (9%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
TER P +PG SS S+ + GPSS + S+ + GPSS S+
Sbjct: 4661 TERVSTPTSVPGSSSTVTTERTSTHTSVTGPSSTVTMERTSTPTSVTGPSSTATTEKVST 4720
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+ G SS G S+ + PSS S+ + GPSS G S+ + G
Sbjct: 4721 PTSVTGLSSTVTTEGVSTPTSVTRPSSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTG 4780
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
PSS S+ + GPSS S+ + GPSS S+ + GPSS
Sbjct: 4781 PSSTATTERTSTPTSVTGPSSTATTERVSTPTSVTGPSSTATTERTSTRTSVTGPSSTVT 4840
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-------------------------- 233
G S+ + GPSS S+ + GPSS
Sbjct: 4841 TEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSMVTTKRTSTSTSVTGPSSTATTERVST 4900
Query: 234 -PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PGP+S S+ +PGPSS S+ +PGPSS S+A + G
Sbjct: 4901 PTSVPGPTSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVSTATSVTG 4960
Query: 293 PSS 295
PSS
Sbjct: 4961 PSS 4963
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 119/290 (41%), Gaps = 11/290 (3%)
Query: 18 STVT-ERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
STVT ER P + GPSS S+ + GPSS S+ + GPSS
Sbjct: 5035 STVTTERTSTPTSVTGPSSTATTEKVSTPTSVTGPSSTATTERTSTPTSVTGPSSTVTTE 5094
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G S+ + GPSS S+ + GPSS S+ + GPSS S+
Sbjct: 5095 GVSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVTGPSSTATTERTSTPT 5154
Query: 136 DLPGPSSAP---------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
+ GPSS +PGPSS S+ +P PSS S+ + GPS
Sbjct: 5155 SVMGPSSMVTTERVSTPMSVPGPSSTVTTERVSTPTSVPEPSSTVTTERFSTPTSVTGPS 5214
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
S S+ + GPSS S+ + GPSS S+ + GPSS
Sbjct: 5215 STETTERTSTPTSVTGPSSTVTTEAVSTPTSVTGPSSTATTERTSTPTSVTGPSSIATTE 5274
Query: 247 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
+ +PGPSS S++ + GPSS S+ + GPSST
Sbjct: 5275 RVYTPTSMPGPSSTVTSAAVSTSTSVTGPSSMVTTERTSTRTSVTGPSST 5324
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 117/286 (40%), Gaps = 10/286 (3%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
TER P + GPSS G S+ + GPSS S+ + GPSS S+
Sbjct: 5075 TERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVST 5134
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+ GPSS S+ + GPSS S+ +PGPSS S+ +P
Sbjct: 5135 PTSVTGPSSTATTERTSTPTSVMGPSSMVTTERVSTPMSVPGPSSTVTTERVSTPTSVPE 5194
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
PSS S+ + GPSS S+ + GPSS S+ + GPSS
Sbjct: 5195 PSSTVTTERFSTPTSVTGPSSTETTERTSTPTSVTGPSSTVTTEAVSTPTSVTGPSSTAT 5254
Query: 200 LPGPSSAPDLPGPSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
S+ + GPSS +PGPSS S++ + GPSS S+
Sbjct: 5255 TERTSTPTSVTGPSSIATTERVYTPTSMPGPSSTVTSAAVSTSTSVTGPSSMVTTERTST 5314
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
+ GPSS S+ + G SS S+ +PGPSST
Sbjct: 5315 RTSVTGPSSTATTERVSTPTSVTGLSSMVTTERTSTPTSVPGPSST 5360
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 121/309 (39%), Gaps = 29/309 (9%)
Query: 18 STVT-ERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
STVT ER P + GPSS S+ + G SS G S+ + PSS
Sbjct: 4693 STVTMERTSTPTSVTGPSSTATTEKVSTPTSVTGLSSTVTTEGVSTPTSVTRPSSTATTE 4752
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
S+ + GPSS G S+ + GPSS S+ + GPSS S+
Sbjct: 4753 RTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVSTPT 4812
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
+ GPSS S+ + GPSS G S+ + GPSS S+ + GPS
Sbjct: 4813 SVTGPSSTATTERTSTRTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPS 4872
Query: 196 SA---------------------------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
S +PGP+S S+ +PGPSS
Sbjct: 4873 SMVTTKRTSTSTSVTGPSSTATTERVSTPTSVPGPTSTVTTERVSTPTSVPGPSSTVTTE 4932
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
S+ +PGPSS S+A + GPSS + +PG SS S++
Sbjct: 4933 RVSTPTSVPGPSSTVITERVSTATSVTGPSSIATTERVYTPTSVPGSSSRVTSAAVSTST 4992
Query: 289 DLPGPSSTV 297
+ GPSS V
Sbjct: 4993 SVTGPSSMV 5001
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 120/309 (38%), Gaps = 29/309 (9%)
Query: 18 STVT-ERP-LEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
STVT ER + GPSS + S+ + GPSS S+ + G SS
Sbjct: 4675 STVTTERTSTHTSVTGPSSTVTMERTSTPTSVTGPSSTATTEKVSTPTSVTGLSSTVTTE 4734
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G S+ + PSS S+ + GPSS G S+ + GPSS S+
Sbjct: 4735 GVSTPTSVTRPSSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPT 4794
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
+ GPSS S+ + GPSS S+ + GPSS G S+ + GPS
Sbjct: 4795 SVTGPSSTATTERVSTPTSVTGPSSTATTERTSTRTSVTGPSSTVTTEGVSTPTSVTGPS 4854
Query: 196 SAPDLPGPSSAPDLPGPSSA---------------------------PDLPGPSSAPDLP 228
S S+ + GPSS +PGP+S
Sbjct: 4855 STATTERTSTPTSVTGPSSMVTTKRTSTSTSVTGPSSTATTERVSTPTSVPGPTSTVTTE 4914
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
S+ +PGPSS S+ +PGPSS S+A + GPSS +
Sbjct: 4915 RVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVSTATSVTGPSSIATTERVYTPT 4974
Query: 289 DLPGPSSTV 297
+PG SS V
Sbjct: 4975 SVPGSSSRV 4983
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 104/251 (41%), Gaps = 18/251 (7%)
Query: 9 VFTEADYLPSTVT--------ERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 59
V TE P++VT ER P +PG SS S++ + GPSS
Sbjct: 5577 VITERVSTPTSVTGPSSIATTERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERT 5636
Query: 60 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 119
S+ + GPSS G S+ + GPSS S+ + GPSS S+ +
Sbjct: 5637 STPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSV 5696
Query: 120 PGPSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
PGP+S +PGPSS S+ +PGPSS S+A + GPSS
Sbjct: 5697 PGPTSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVSTATSVTGPSSI 5756
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
+ +PGPSS S++ + GPSS S+ + GPSS
Sbjct: 5757 ATTERVYTPTSMPGPSSTVTSAAVSTSTSVTGPSSMVTTERTSTRTSVTGPSSTATTERV 5816
Query: 231 SSAPDLPGPSS 241
S+ + G SS
Sbjct: 5817 STPTSVTGLSS 5827
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 113/296 (38%), Gaps = 27/296 (9%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+ GPSS S+ + GPSS S+ + GPSS S+ +PG SS
Sbjct: 4616 VTGPSSTATTERTSTPTSVTGPSSTATTEKVSTPTSVTGPSSTATTERVSTPTSVPGSSS 4675
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
S+ + GPSS + S+ + GPSS S+ + G SS G
Sbjct: 4676 TVTTERTSTHTSVTGPSSTVTMERTSTPTSVTGPSSTATTEKVSTPTSVTGLSSTVTTEG 4735
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
S+ + PSS S+ + GPSS G S+ + GPSS S+
Sbjct: 4736 VSTPTSVTRPSSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTS 4795
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
+ GPSS S+ + GPSS S+ + GPSS G S+ + GPSS
Sbjct: 4796 VTGPSSTATTERVSTPTSVTGPSSTATTERTSTRTSVTGPSSTVTTEGVSTPTSVTGPSS 4855
Query: 269 APDLPGPSSAPDLPGPSSA---------------------------PDLPGPSSTV 297
S+ + GPSS +PGP+STV
Sbjct: 4856 TATTERTSTPTSVTGPSSMVTTKRTSTSTSVTGPSSTATTERVSTPTSVPGPTSTV 4911
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 98/256 (38%), Gaps = 39/256 (15%)
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
PS+A P+S L + + P+S + GPSS S+ LPGPSS
Sbjct: 4370 PSTAITTSTPTSETGLSSTVTTGRVSIPTS---VTGPSSTVTTERVSTPMSLPGPSSMVT 4426
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-------------------------- 170
S+ + GPSS S+ + GPSS
Sbjct: 4427 SGVVSTTTSVTGPSSKATTKRVSTRTSVTGPSSMVTTKRTSTSTSVTGPSSTATTERVST 4486
Query: 171 -PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
+PGP+S S+ +PGPSS S+ +PGPSS S+A + G
Sbjct: 4487 PTSVPGPTSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVSTATSVTG 4546
Query: 230 PSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 280
PSS +PG SS S++ + GPSS S+ + GPSS
Sbjct: 4547 PSSIATTERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTGPSSTAT 4606
Query: 281 LPGPSSAPDLPGPSST 296
SS + GPSST
Sbjct: 4607 TEKVSSPTSVTGPSST 4622
>gi|126325257|ref|XP_001365969.1| PREDICTED: hypothetical protein LOC100015795 isoform 2 [Monodelphis
domestica]
Length = 2299
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 151/302 (50%), Gaps = 42/302 (13%)
Query: 28 DLPGPSS--APDLPGPSSAP--DLPGP--SSAPDLPGP--SSAPDLPGP----SSAPDLP 75
++PGP + P+LPGP + P +LPGP +SAP+L GP + P+LPGP P+LP
Sbjct: 392 EMPGPPTTPVPELPGPPTTPMLELPGPPMTSAPELLGPPVTLVPELPGPPATLVQVPELP 451
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLP-----GPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
GPS+ P L P LP PS +LP P+ A +L P P LP ++A +LPG
Sbjct: 452 GPSATPVLELSQDLPGLPAPSMVSELPEEVPRQPTMALEL--PQELPGLPVVTTAMELPG 509
Query: 131 P---SSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
+ A +L P ++ P+ P A +LPG P++ S P P ++AP+LPG
Sbjct: 510 QPVATVALELAEQPVMTTEPEQPTVMPALELPGQ---PEVTTASGLPGQPVATTAPELPG 566
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
P+L G P + G S P P + A +LPG S A P + A +L G A +
Sbjct: 567 QPEVPELRG---LPSVTGVSELPGQPSATVAQELPGQSGALGQPVATVALELLGQPVASE 623
Query: 245 LPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSTVLG 299
L G ++A +LPG P + A ++ S + DL + + + PS+T L
Sbjct: 624 LSGQPTGAAALELPGQ------PVATVALEISSHSVMTTSDLTTMTVSQSMEVPSTTALE 677
Query: 300 SY 301
SY
Sbjct: 678 SY 679
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 123/262 (46%), Gaps = 57/262 (21%)
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP------DLPGP--SSAPDLPGPSS-- 151
P S +LP S L P + +P S P +LP P S ++PGP +
Sbjct: 341 PRSSITLELPESSVTEVLRLPEQSTTIPLLSMEPPTTTVLELPKPPAISVLEMPGPPTTP 400
Query: 152 APDLPGPSSAP--DLPGP--SSAPDLPGP--SSAPDLPGP----SSAPDLPGPSSAPDLP 201
P+LPGP + P +LPGP +SAP+L GP + P+LPGP P+LPGPS+ P L
Sbjct: 401 VPELPGPPTTPMLELPGPPMTSAPELLGPPVTLVPELPGPPATLVQVPELPGPSATPVLE 460
Query: 202 GPSSAPDLPGPSSAPDLPG------------PSSAPDLPGPSSAPDLPGP---------- 239
P LP PS +LP P P LP ++A +LPG
Sbjct: 461 LSQDLPGLPAPSMVSELPEEVPRQPTMALELPQELPGLPVVTTAMELPGQPVATVALELA 520
Query: 240 -----SSAPDLPGPSSAPDLPGP---SSAPDLPGP---SSAPDLPGPSSAPDLPG---PS 285
++ P+ P A +LPG ++A LPG ++AP+LPG P+L G +
Sbjct: 521 EQPVMTTEPEQPTVMPALELPGQPEVTTASGLPGQPVATTAPELPGQPEVPELRGLPSVT 580
Query: 286 SAPDLPG-PSSTVLGSYLGEAG 306
+LPG PS+TV G++G
Sbjct: 581 GVSELPGQPSATVAQELPGQSG 602
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 98/199 (49%), Gaps = 22/199 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-----GPSSAPDLPGPSSAPDLPGPSSAP 81
P+LPGPS+ P L P LP PS +LP P+ A +L P P LP ++A
Sbjct: 448 PELPGPSATPVLELSQDLPGLPAPSMVSELPEEVPRQPTMALEL--PQELPGLPVVTTAM 505
Query: 82 DLPGP---SSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
+LPG + A +L P ++ P+ P A +LPG P++ S P P ++AP
Sbjct: 506 ELPGQPVATVALELAEQPVMTTEPEQPTVMPALELPGQ---PEVTTASGLPGQPVATTAP 562
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
+LPG P+L G P + G S P P + A +LPG S A P + A +L G
Sbjct: 563 ELPGQPEVPELRG---LPSVTGVSELPGQPSATVAQELPGQSGALGQPVATVALELLGQP 619
Query: 196 SAPDLPGP---SSAPDLPG 211
A +L G ++A +LPG
Sbjct: 620 VASELSGQPTGAAALELPG 638
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 22 ERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
E P +P++ S P P ++AP+LPG P+L G P + G S P P + A
Sbjct: 539 ELPGQPEVTTASGLPGQPVATTAPELPGQPEVPELRG---LPSVTGVSELPGQPSATVAQ 595
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPG 121
+LPG S A P + A +L G A +L G ++A +LPG
Sbjct: 596 ELPGQSGALGQPVATVALELLGQPVASELSGQPTGAAALELPG 638
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 25/160 (15%)
Query: 17 PSTVTERPLE-PDLPGPSSAPDLPGP---SSAPDL---PGPSSAPDLPGPSSAPDLPGP- 68
P+ E P E P LP ++A +LPG + A +L P ++ P+ P A +LPG
Sbjct: 485 PTMALELPQELPGLPVVTTAMELPGQPVATVALELAEQPVMTTEPEQPTVMPALELPGQP 544
Query: 69 --SSAPDLPGP---SSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLP 120
++A LPG ++AP+LPG P+L G + +LPG P + A +LP
Sbjct: 545 EVTTASGLPGQPVATTAPELPGQPEVPELRGLPSVTGVSELPGQ------PSATVAQELP 598
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPG 157
G S A P + A +L G A +L G ++A +LPG
Sbjct: 599 GQSGALGQPVATVALELLGQPVASELSGQPTGAAALELPG 638
>gi|326806946|tpe|CBL80809.2| TPA: mucin-5B [Bos taurus]
Length = 6724
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 123/287 (42%), Gaps = 10/287 (3%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
TER P +PGP+S S+ +PGPSS S+ +PGPSS S+
Sbjct: 4799 TERVSTPTSVPGPTSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVST 4858
Query: 80 APDLPGPSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
A + GPSS +PG SS S++ + GPSS S+ + G
Sbjct: 4859 ATSVTGPSSIATTERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTG 4918
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
PSS + G S+ + GPSS S+ + GPSS S+ + GPSS
Sbjct: 4919 PSSTVTIEGVSTPTSVTGPSSTVTTERTSTPTSVTGPSSTATTEKVSTPTSVTGPSSTAT 4978
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
S+ + GPSS G S+ + GPSS S+ + GPSS S+
Sbjct: 4979 TERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVST 5038
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+ GPSS S+ + GPSS S+ +PGPSSTV
Sbjct: 5039 PTSVTGPSSTATTERTSTPTSVMGPSSMVTTERVSTPMSVPGPSSTV 5085
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 124/291 (42%), Gaps = 11/291 (3%)
Query: 18 STVT-ERPLEP-DLPGPSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 66
STVT ER P +PGPSS +PGPSS S+A + GPSS
Sbjct: 4813 STVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVSTATSVTGPSSIATTE 4872
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
+ +PG SS S++ + GPSS S+ + GPSS + G S+
Sbjct: 4873 RVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTGPSSTVTIEGVSTPT 4932
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
+ GPSS S+ + GPSS S+ + GPSS S+ + GPS
Sbjct: 4933 SVTGPSSTVTTERTSTPTSVTGPSSTATTEKVSTPTSVTGPSSTATTERTSTPTSVTGPS 4992
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
S G S+ + GPSS S+ + GPSS S+ + GPSS
Sbjct: 4993 STVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVTGPSSTATTE 5052
Query: 247 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
S+ + GPSS S+ +PGPSS S+ +P PSSTV
Sbjct: 5053 RTSTPTSVMGPSSMVTTERVSTPMSVPGPSSTVTTERVSTPTSVPEPSSTV 5103
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 118/287 (41%), Gaps = 10/287 (3%)
Query: 21 TERPLEP-DLPGPSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 70
TER P +PGP+S +PGPSS S+ +PGPSS S+
Sbjct: 4385 TERVSTPTSVPGPTSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVST 4444
Query: 71 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
A + GPSS + +PG SS S++ + GPSS S+ + G
Sbjct: 4445 ATSVTGPSSIATTERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTG 4504
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
PSS SS + GPSS S+ + GPSS S+ + GPSS
Sbjct: 4505 PSSTATTEKVSSPTSVTGPSSTATTERTSTPTSVTGPSSTATTEKVSTPTSVTGPSSTAT 4564
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
S+ +PG SS S+ + GPSS + S+ + GPSS S+
Sbjct: 4565 TERVSTPTSVPGSSSTVTTERTSTHTSVTGPSSTVTMERTSTPTSVTGPSSTATTEKVST 4624
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+ G SS G S+ + PSS S+ + GPSSTV
Sbjct: 4625 PTSVTGLSSTVTTEGVSTPTSVTRPSSTATTERTSTPTSVTGPSSTV 4671
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 120/290 (41%), Gaps = 11/290 (3%)
Query: 18 STVT-ERPLEP-DLPGPSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 66
STVT ER P +PGPSS +PGPSS S+A + GPSS
Sbjct: 4399 STVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVSTATSVTGPSSIATTE 4458
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
+ +PG SS S++ + GPSS S+ + GPSS SS
Sbjct: 4459 RVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTGPSSTATTEKVSSPT 4518
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
+ GPSS S+ + GPSS S+ + GPSS S+ +PG S
Sbjct: 4519 SVTGPSSTATTERTSTPTSVTGPSSTATTEKVSTPTSVTGPSSTATTERVSTPTSVPGSS 4578
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
S S+ + GPSS + S+ + GPSS S+ + G SS
Sbjct: 4579 STVTTERTSTHTSVTGPSSTVTMERTSTPTSVTGPSSTATTEKVSTPTSVTGLSSTVTTE 4638
Query: 247 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
G S+ + PSS S+ + GPSS G S+ + GPSST
Sbjct: 4639 GVSTPTSVTRPSSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSST 4688
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 122/308 (39%), Gaps = 29/308 (9%)
Query: 18 STVT-ERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---- 71
STVT ER P LPGPSS S+ + GPSS S+ + GPSS
Sbjct: 4309 STVTTERVSTPMSLPGPSSMVTSGVVSTTTSVTGPSSKATTKRVSTRTSVTGPSSMVTTK 4368
Query: 72 -----------------------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 108
+PGP+S S+ +PGPSS S+
Sbjct: 4369 RTSTSTSVTGPSSTATTERVSTPTSVPGPTSTVTTERVSTPTSVPGPSSTVTTERVSTPT 4428
Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 168
+PGPSS S+A + GPSS + +PG SS S++ + GPS
Sbjct: 4429 SVPGPSSTVITERVSTATSVTGPSSIATTERVYTPTSVPGSSSRVTSAAVSTSTSVTGPS 4488
Query: 169 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
S S+ + GPSS SS + GPSS S+ + GPSS
Sbjct: 4489 SMVTTERTSTPTSVTGPSSTATTEKVSSPTSVTGPSSTATTERTSTPTSVTGPSSTATTE 4548
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
S+ + GPSS S+ +PG SS S+ + GPSS + S+
Sbjct: 4549 KVSTPTSVTGPSSTATTERVSTPTSVPGSSSTVTTERTSTHTSVTGPSSTVTMERTSTPT 4608
Query: 289 DLPGPSST 296
+ GPSST
Sbjct: 4609 SVTGPSST 4616
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 114/277 (41%), Gaps = 9/277 (3%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---------PDLPGPSS 79
+ GPSS S+ + GPSS S+ + GPSS +PGPSS
Sbjct: 5132 VTGPSSTVTTEAVSTPTSVTGPSSTATTERTSTPTSVTGPSSIATTERVYTPTSMPGPSS 5191
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
S++ + GPSS S+ + GPSS S+ + G SS
Sbjct: 5192 TVTSAAVSTSTSVTGPSSMVTTERTSTRTSVTGPSSTATTERVSTPTSVTGLSSMVTTER 5251
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
S+ +PGPSS S+ + GPSS S+ +PG SS S+
Sbjct: 5252 TSTPTSVPGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVPGSSSTATTERTSTHTS 5311
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
+ PSS + S++ + GPSS S+ + GPSS G S+ + GPSS
Sbjct: 5312 VTVPSSTVTMERTSTSTSVTGPSSTVTTEKVSTPTSVTGPSSTVTTEGVSTPTSVTGPSS 5371
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
S+ + GPSS G S+ + GPSST
Sbjct: 5372 TATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSST 5408
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 117/295 (39%), Gaps = 27/295 (9%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA----------------- 71
+ GPSS G S+ + GPSS S+ + GPSS
Sbjct: 4736 VTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSMVTTKRTSTSTSVTGPSS 4795
Query: 72 ----------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 121
+PGP+S S+ +PGPSS S+ +PGPSS
Sbjct: 4796 TATTERVSTPTSVPGPTSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITER 4855
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
S+A + GPSS + +PG SS S++ + GPSS S+
Sbjct: 4856 VSTATSVTGPSSIATTERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTS 4915
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
+ GPSS + G S+ + GPSS S+ + GPSS S+ + GPSS
Sbjct: 4916 VTGPSSTVTIEGVSTPTSVTGPSSTVTTERTSTPTSVTGPSSTATTEKVSTPTSVTGPSS 4975
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
S+ + GPSS G S+ + GPSS S+ + GPSST
Sbjct: 4976 TATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSST 5030
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 121/297 (40%), Gaps = 18/297 (6%)
Query: 9 VFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSA---------PDLPGP 59
V TEA P++VT GPSS S+ + GPSS +PGP
Sbjct: 5139 VTTEAVSTPTSVT---------GPSSTATTERTSTPTSVTGPSSIATTERVYTPTSMPGP 5189
Query: 60 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 119
SS S++ + GPSS S+ + GPSS S+ + G SS
Sbjct: 5190 SSTVTSAAVSTSTSVTGPSSMVTTERTSTRTSVTGPSSTATTERVSTPTSVTGLSSMVTT 5249
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
S+ +PGPSS S+ + GPSS S+ +PG SS S+
Sbjct: 5250 ERTSTPTSVPGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVPGSSSTATTERTSTH 5309
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
+ PSS + S++ + GPSS S+ + GPSS G S+ + GP
Sbjct: 5310 TSVTVPSSTVTMERTSTSTSVTGPSSTVTTEKVSTPTSVTGPSSTVTTEGVSTPTSVTGP 5369
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
SS S+ + GPSS G S+ + GPSS S+ + G SST
Sbjct: 5370 SSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGSSST 5426
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 121/311 (38%), Gaps = 29/311 (9%)
Query: 16 LPSTVTERPLE--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 73
L STVT + + GPSS S+ LPGPSS S+ + GPSS
Sbjct: 4289 LSSTVTTGRVSIPTSVTGPSSTVTTERVSTPMSLPGPSSMVTSGVVSTTTSVTGPSSKAT 4348
Query: 74 LPGPSSAPDLPGPSSA---------------------------PDLPGPSSAPDLPGPSS 106
S+ + GPSS +PGP+S S+
Sbjct: 4349 TKRVSTRTSVTGPSSMVTTKRTSTSTSVTGPSSTATTERVSTPTSVPGPTSTVTTERVST 4408
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
+PGPSS S+ +PGPSS S+A + GPSS + +PG
Sbjct: 4409 PTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVSTATSVTGPSSIATTERVYTPTSVPG 4468
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 226
SS S++ + GPSS S+ + GPSS SS + GPSS
Sbjct: 4469 SSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTGPSSTATTEKVSSPTSVTGPSSTAT 4528
Query: 227 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
S+ + GPSS S+ + GPSS S+ +PG SS S+
Sbjct: 4529 TERTSTPTSVTGPSSTATTEKVSTPTSVTGPSSTATTERVSTPTSVPGSSSTVTTERTST 4588
Query: 287 APDLPGPSSTV 297
+ GPSSTV
Sbjct: 4589 HTSVTGPSSTV 4599
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 119/290 (41%), Gaps = 11/290 (3%)
Query: 18 STVT-ERPLEP-DLPGPSS---------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 66
STVT ER P +PGPSS A + GPSS + +PG SS
Sbjct: 4417 STVTTERVSTPTSVPGPSSTVITERVSTATSVTGPSSIATTERVYTPTSVPGSSSRVTSA 4476
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
S++ + GPSS S+ + GPSS SS + GPSS S+
Sbjct: 4477 AVSTSTSVTGPSSMVTTERTSTPTSVTGPSSTATTEKVSSPTSVTGPSSTATTERTSTPT 4536
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
+ GPSS S+ + GPSS S+ +PG SS S+ + GPS
Sbjct: 4537 SVTGPSSTATTEKVSTPTSVTGPSSTATTERVSTPTSVPGSSSTVTTERTSTHTSVTGPS 4596
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
S + S+ + GPSS S+ + G SS G S+ + PSS
Sbjct: 4597 STVTMERTSTPTSVTGPSSTATTEKVSTPTSVTGLSSTVTTEGVSTPTSVTRPSSTATTE 4656
Query: 247 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
S+ + GPSS G S+ + GPSS S+ + GPSST
Sbjct: 4657 RTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSST 4706
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 118/287 (41%), Gaps = 10/287 (3%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
TER P +PGPSS S+ + GPSS S+ +PG SS S+
Sbjct: 5249 TERTSTPTSVPGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVPGSSSTATTERTST 5308
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+ PSS + S++ + GPSS S+ + GPSS G S+ + G
Sbjct: 5309 HTSVTVPSSTVTMERTSTSTSVTGPSSTVTTEKVSTPTSVTGPSSTVTTEGVSTPTSVTG 5368
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
PSS S+ + GPSS G S+ + GPSS S+ + G SS
Sbjct: 5369 PSSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGSSSTAT 5428
Query: 200 LPGPSSAPDLPGPSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
S+ + GPSS +PGPSS S+ +PGPSS S+
Sbjct: 5429 TERVSTPTSVMGPSSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSPVITERVST 5488
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+ GPSS + +PG SS S++ + GPSS V
Sbjct: 5489 PTSVTGPSSIATTERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMV 5535
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 121/306 (39%), Gaps = 28/306 (9%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-------- 71
TER P +PGPSS S++ + GPSS S+ + GPSS
Sbjct: 5177 TERVYTPTSMPGPSSTVTSAAVSTSTSVTGPSSMVTTERTSTRTSVTGPSSTATTERVST 5236
Query: 72 -------------------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 112
+PGPSS S+ + GPSS S+ +PG
Sbjct: 5237 PTSVTGLSSMVTTERTSTPTSVPGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVPG 5296
Query: 113 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 172
SS S+ + PSS + S++ + GPSS S+ + GPSS
Sbjct: 5297 SSSTATTERTSTHTSVTVPSSTVTMERTSTSTSVTGPSSTVTTEKVSTPTSVTGPSSTVT 5356
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
G S+ + GPSS S+ + GPSS G S+ + GPSS S+
Sbjct: 5357 TEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTST 5416
Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+ G SS S+ + GPSS S+ +PGPSS S+ +PG
Sbjct: 5417 PTSVTGSSSTATTERVSTPTSVMGPSSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPG 5476
Query: 293 PSSTVL 298
PSS V+
Sbjct: 5477 PSSPVI 5482
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 108/260 (41%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 97
+ GPSS S+ + GPSS S+ + GPSS + +PGPSS
Sbjct: 5132 VTGPSSTVTTEAVSTPTSVTGPSSTATTERTSTPTSVTGPSSIATTERVYTPTSMPGPSS 5191
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
S++ + GPSS S+ + GPSS S+ + G SS
Sbjct: 5192 TVTSAAVSTSTSVTGPSSMVTTERTSTRTSVTGPSSTATTERVSTPTSVTGLSSMVTTER 5251
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
S+ +PGPSS S+ + GPSS S+ +PG SS S+
Sbjct: 5252 TSTPTSVPGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVPGSSSTATTERTSTHTS 5311
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
+ PSS + S++ + GPSS S+ + GPSS G S+ + GPSS
Sbjct: 5312 VTVPSSTVTMERTSTSTSVTGPSSTVTTEKVSTPTSVTGPSSTVTTEGVSTPTSVTGPSS 5371
Query: 278 APDLPGPSSAPDLPGPSSTV 297
S+ + GPSSTV
Sbjct: 5372 TATTERTSTPTSVTGPSSTV 5391
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 119/287 (41%), Gaps = 10/287 (3%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
TER P + GPSS + G S+ + GPSS S+ + GPSS S+
Sbjct: 4907 TERTSTPTSVTGPSSTVTIEGVSTPTSVTGPSSTVTTERTSTPTSVTGPSSTATTEKVST 4966
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+ GPSS S+ + GPSS G S+ + GPSS S+ + G
Sbjct: 4967 PTSVTGPSSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTG 5026
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
PSS S+ + GPSS S+ + GPSS S+ +PGPSS
Sbjct: 5027 PSSTATTERVSTPTSVTGPSSTATTERTSTPTSVMGPSSMVTTERVSTPMSVPGPSSTVT 5086
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
S+ +P PSS S+ + GPSS S+ + GPSS S+
Sbjct: 5087 TERVSTPTSVPEPSSTVTTERFSTPTSVTGPSSTETTERTSTPTSVTGPSSTVTTEAVST 5146
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSA---------PDLPGPSSTV 297
+ GPSS S+ + GPSS +PGPSSTV
Sbjct: 5147 PTSVTGPSSTATTERTSTPTSVTGPSSIATTERVYTPTSMPGPSSTV 5193
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 116/287 (40%), Gaps = 10/287 (3%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
TER P +PG SS S++ + GPSS S+ + GPSS SS
Sbjct: 4457 TERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTGPSSTATTEKVSS 4516
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+ GPSS S+ + GPSS S+ + GPSS S+ +PG
Sbjct: 4517 PTSVTGPSSTATTERTSTPTSVTGPSSTATTEKVSTPTSVTGPSSTATTERVSTPTSVPG 4576
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
SS S+ + GPSS + S+ + GPSS S+ + G SS
Sbjct: 4577 SSSTVTTERTSTHTSVTGPSSTVTMERTSTPTSVTGPSSTATTEKVSTPTSVTGLSSTVT 4636
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
G S+ + PSS S+ + GPSS G S+ + GPSS S+
Sbjct: 4637 TEGVSTPTSVTRPSSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTST 4696
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSAPD---------LPGPSSTV 297
+ GPSS S+ + GPSS + GPSSTV
Sbjct: 4697 PTSVTGPSSTATTERVSTPTSVTGPSSTATTERTSTRTSVTGPSSTV 4743
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 121/304 (39%), Gaps = 28/304 (9%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
TER P + GPSS G S+ + GPSS S+ + GPSS S+
Sbjct: 4655 TERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVST 4714
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+ GPSS S+ + GPSS G S+ + GPSS S+ + G
Sbjct: 4715 PTSVTGPSSTATTERTSTRTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTG 4774
Query: 140 PSSA---------------------------PDLPGPSSAPDLPGPSSAPDLPGPSSAPD 172
PSS +PGP+S S+ +PGPSS
Sbjct: 4775 PSSMVTTKRTSTSTSVTGPSSTATTERVSTPTSVPGPTSTVTTERVSTPTSVPGPSSTVT 4834
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
S+ +PGPSS S+A + GPSS + +PG SS S+
Sbjct: 4835 TERVSTPTSVPGPSSTVITERVSTATSVTGPSSIATTERVYTPTSVPGSSSRVTSAAVST 4894
Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+ + GPSS S+ + GPSS + G S+ + GPSS S+ + G
Sbjct: 4895 STSVTGPSSMVTTERTSTPTSVTGPSSTVTIEGVSTPTSVTGPSSTVTTERTSTPTSVTG 4954
Query: 293 PSST 296
PSST
Sbjct: 4955 PSST 4958
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 121/305 (39%), Gaps = 28/305 (9%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
TER P + GPSS S+ + GPSS S+ + GPSS G S+
Sbjct: 4691 TERTSTPTSVTGPSSTATTERVSTPTSVTGPSSTATTERTSTRTSVTGPSSTVTTEGVST 4750
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSA---------------------------PDLPG 112
+ GPSS S+ + GPSS +PG
Sbjct: 4751 PTSVTGPSSTATTERTSTPTSVTGPSSMVTTKRTSTSTSVTGPSSTATTERVSTPTSVPG 4810
Query: 113 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 172
P+S S+ +PGPSS S+ +PGPSS S+A + GPSS
Sbjct: 4811 PTSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVSTATSVTGPSSIAT 4870
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
+ +PG SS S++ + GPSS S+ + GPSS + G S+
Sbjct: 4871 TERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTGPSSTVTIEGVST 4930
Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+ GPSS S+ + GPSS S+ + GPSS S+ + G
Sbjct: 4931 PTSVTGPSSTVTTERTSTPTSVTGPSSTATTEKVSTPTSVTGPSSTATTERTSTPTSVTG 4990
Query: 293 PSSTV 297
PSSTV
Sbjct: 4991 PSSTV 4995
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 118/286 (41%), Gaps = 10/286 (3%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
TER P +PG SS S++ + GPSS S+ + GPSS + G S+
Sbjct: 4871 TERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTGPSSTVTIEGVST 4930
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+ GPSS S+ + GPSS S+ + GPSS S+ + G
Sbjct: 4931 PTSVTGPSSTVTTERTSTPTSVTGPSSTATTEKVSTPTSVTGPSSTATTERTSTPTSVTG 4990
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
PSS G S+ + GPSS S+ + GPSS S+ + GPSS
Sbjct: 4991 PSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVTGPSSTAT 5050
Query: 200 LPGPSSAPDLPGPSSAP---------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
S+ + GPSS +PGPSS S+ +P PSS S+
Sbjct: 5051 TERTSTPTSVMGPSSMVTTERVSTPMSVPGPSSTVTTERVSTPTSVPEPSSTVTTERFST 5110
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
+ GPSS S+ + GPSS S+ + GPSST
Sbjct: 5111 PTSVTGPSSTETTERTSTPTSVTGPSSTVTTEAVSTPTSVTGPSST 5156
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 120/290 (41%), Gaps = 10/290 (3%)
Query: 18 STVTER-PLEPDLPGPSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 67
+ +TER + GPSS +PG SS S++ + GPSS
Sbjct: 4850 TVITERVSTATSVTGPSSIATTERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTER 4909
Query: 68 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 127
S+ + GPSS + G S+ + GPSS S+ + GPSS S+
Sbjct: 4910 TSTPTSVTGPSSTVTIEGVSTPTSVTGPSSTVTTERTSTPTSVTGPSSTATTEKVSTPTS 4969
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
+ GPSS S+ + GPSS G S+ + GPSS S+ + GPSS
Sbjct: 4970 VTGPSSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSS 5029
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
S+ + GPSS S+ + GPSS S+ +PGPSS
Sbjct: 5030 TATTERVSTPTSVTGPSSTATTERTSTPTSVMGPSSMVTTERVSTPMSVPGPSSTVTTER 5089
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
S+ +P PSS S+ + GPSS S+ + GPSSTV
Sbjct: 5090 VSTPTSVPEPSSTVTTERFSTPTSVTGPSSTETTERTSTPTSVTGPSSTV 5139
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 106/259 (40%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 97
+ GPSS SS + GPSS S+ + GPSS S+ + GPSS
Sbjct: 4502 VTGPSSTATTEKVSSPTSVTGPSSTATTERTSTPTSVTGPSSTATTEKVSTPTSVTGPSS 4561
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
S+ +PG SS S+ + GPSS + S+ + GPSS
Sbjct: 4562 TATTERVSTPTSVPGSSSTVTTERTSTHTSVTGPSSTVTMERTSTPTSVTGPSSTATTEK 4621
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
S+ + G SS G S+ + PSS S+ + GPSS G S+
Sbjct: 4622 VSTPTSVTGLSSTVTTEGVSTPTSVTRPSSTATTERTSTPTSVTGPSSTVTTEGVSTPTS 4681
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
+ GPSS S+ + GPSS S+ + GPSS S+ + GPSS
Sbjct: 4682 VTGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVTGPSSTATTERTSTRTSVTGPSS 4741
Query: 278 APDLPGPSSAPDLPGPSST 296
G S+ + GPSST
Sbjct: 4742 TVTTEGVSTPTSVTGPSST 4760
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 115/287 (40%), Gaps = 10/287 (3%)
Query: 21 TERPLEP-DLPGPSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 70
TER P + GPSS + GPSS S+ + GPSS S+
Sbjct: 4493 TERTSTPTSVTGPSSTATTEKVSSPTSVTGPSSTATTERTSTPTSVTGPSSTATTEKVST 4552
Query: 71 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
+ GPSS S+ +PG SS S+ + GPSS + S+ + G
Sbjct: 4553 PTSVTGPSSTATTERVSTPTSVPGSSSTVTTERTSTHTSVTGPSSTVTMERTSTPTSVTG 4612
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
PSS S+ + G SS G S+ + PSS S+ + GPSS
Sbjct: 4613 PSSTATTEKVSTPTSVTGLSSTVTTEGVSTPTSVTRPSSTATTERTSTPTSVTGPSSTVT 4672
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
G S+ + GPSS S+ + GPSS S+ + GPSS S+
Sbjct: 4673 TEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVTGPSSTATTERTST 4732
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+ GPSS G S+ + GPSS S+ + GPSS V
Sbjct: 4733 RTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSMV 4779
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 118/304 (38%), Gaps = 27/304 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+ GPSS S+ +PG SS S+ + GPSS + S+ + GPSS
Sbjct: 4556 VTGPSSTATTERVSTPTSVPGSSSTVTTERTSTHTSVTGPSSTVTMERTSTPTSVTGPSS 4615
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
S+ + G SS G S+ + PSS S+ + GPSS G
Sbjct: 4616 TATTEKVSTPTSVTGLSSTVTTEGVSTPTSVTRPSSTATTERTSTPTSVTGPSSTVTTEG 4675
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
S+ + GPSS S+ + GPSS S+ + GPSS S+
Sbjct: 4676 VSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVTGPSSTATTERTSTRTS 4735
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA----------------- 251
+ GPSS G S+ + GPSS S+ + GPSS
Sbjct: 4736 VTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSMVTTKRTSTSTSVTGPSS 4795
Query: 252 ----------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSY 301
+PGP+S S+ +PGPSS S+ +PGPSSTV+
Sbjct: 4796 TATTERVSTPTSVPGPTSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITER 4855
Query: 302 LGEA 305
+ A
Sbjct: 4856 VSTA 4859
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 118/303 (38%), Gaps = 28/303 (9%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
TER P +PG SS S+ + GPSS + S+ + GPSS S+
Sbjct: 4565 TERVSTPTSVPGSSSTVTTERTSTHTSVTGPSSTVTMERTSTPTSVTGPSSTATTEKVST 4624
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+ G SS G S+ + PSS S+ + GPSS G S+ + G
Sbjct: 4625 PTSVTGLSSTVTTEGVSTPTSVTRPSSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTG 4684
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
PSS S+ + GPSS S+ + GPSS S+ + GPSS
Sbjct: 4685 PSSTATTERTSTPTSVTGPSSTATTERVSTPTSVTGPSSTATTERTSTRTSVTGPSSTVT 4744
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-------------------------- 233
G S+ + GPSS S+ + GPSS
Sbjct: 4745 TEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSMVTTKRTSTSTSVTGPSSTATTERVST 4804
Query: 234 -PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PGP+S S+ +PGPSS S+ +PGPSS S+A + G
Sbjct: 4805 PTSVPGPTSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVSTATSVTG 4864
Query: 293 PSS 295
PSS
Sbjct: 4865 PSS 4867
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 119/290 (41%), Gaps = 11/290 (3%)
Query: 18 STVT-ERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
STVT ER P + GPSS S+ + GPSS S+ + GPSS
Sbjct: 4939 STVTTERTSTPTSVTGPSSTATTEKVSTPTSVTGPSSTATTERTSTPTSVTGPSSTVTTE 4998
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G S+ + GPSS S+ + GPSS S+ + GPSS S+
Sbjct: 4999 GVSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVSTPTSVTGPSSTATTERTSTPT 5058
Query: 136 DLPGPSSAP---------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
+ GPSS +PGPSS S+ +P PSS S+ + GPS
Sbjct: 5059 SVMGPSSMVTTERVSTPMSVPGPSSTVTTERVSTPTSVPEPSSTVTTERFSTPTSVTGPS 5118
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
S S+ + GPSS S+ + GPSS S+ + GPSS
Sbjct: 5119 STETTERTSTPTSVTGPSSTVTTEAVSTPTSVTGPSSTATTERTSTPTSVTGPSSIATTE 5178
Query: 247 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
+ +PGPSS S++ + GPSS S+ + GPSST
Sbjct: 5179 RVYTPTSMPGPSSTVTSAAVSTSTSVTGPSSMVTTERTSTRTSVTGPSST 5228
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 117/286 (40%), Gaps = 10/286 (3%)
Query: 21 TERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
TER P + GPSS G S+ + GPSS S+ + GPSS S+
Sbjct: 4979 TERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVST 5038
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+ GPSS S+ + GPSS S+ +PGPSS S+ +P
Sbjct: 5039 PTSVTGPSSTATTERTSTPTSVMGPSSMVTTERVSTPMSVPGPSSTVTTERVSTPTSVPE 5098
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
PSS S+ + GPSS S+ + GPSS S+ + GPSS
Sbjct: 5099 PSSTVTTERFSTPTSVTGPSSTETTERTSTPTSVTGPSSTVTTEAVSTPTSVTGPSSTAT 5158
Query: 200 LPGPSSAPDLPGPSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
S+ + GPSS +PGPSS S++ + GPSS S+
Sbjct: 5159 TERTSTPTSVTGPSSIATTERVYTPTSMPGPSSTVTSAAVSTSTSVTGPSSMVTTERTST 5218
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
+ GPSS S+ + G SS S+ +PGPSST
Sbjct: 5219 RTSVTGPSSTATTERVSTPTSVTGLSSMVTTERTSTPTSVPGPSST 5264
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 107/260 (41%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 97
+ GPSS S+ + GPSS S+ + GPSS G S+ + GPSS
Sbjct: 4952 VTGPSSTATTEKVSTPTSVTGPSSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSS 5011
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
S+ + GPSS S+ + GPSS S+ + GPSS
Sbjct: 5012 TATTERTSTPTSVTGPSSTATTERVSTPTSVTGPSSTATTERTSTPTSVMGPSSMVTTER 5071
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
S+ +PGPSS S+ +P PSS S+ + GPSS S+
Sbjct: 5072 VSTPMSVPGPSSTVTTERVSTPTSVPEPSSTVTTERFSTPTSVTGPSSTETTERTSTPTS 5131
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
+ GPSS S+ + GPSS S+ + GPSS + +PGPSS
Sbjct: 5132 VTGPSSTVTTEAVSTPTSVTGPSSTATTERTSTPTSVTGPSSIATTERVYTPTSMPGPSS 5191
Query: 278 APDLPGPSSAPDLPGPSSTV 297
S++ + GPSS V
Sbjct: 5192 TVTSAAVSTSTSVTGPSSMV 5211
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 121/309 (39%), Gaps = 29/309 (9%)
Query: 18 STVT-ERPLEP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
STVT ER P + GPSS S+ + G SS G S+ + PSS
Sbjct: 4597 STVTMERTSTPTSVTGPSSTATTEKVSTPTSVTGLSSTVTTEGVSTPTSVTRPSSTATTE 4656
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
S+ + GPSS G S+ + GPSS S+ + GPSS S+
Sbjct: 4657 RTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTATTERVSTPT 4716
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
+ GPSS S+ + GPSS G S+ + GPSS S+ + GPS
Sbjct: 4717 SVTGPSSTATTERTSTRTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPS 4776
Query: 196 SA---------------------------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
S +PGP+S S+ +PGPSS
Sbjct: 4777 SMVTTKRTSTSTSVTGPSSTATTERVSTPTSVPGPTSTVTTERVSTPTSVPGPSSTVTTE 4836
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
S+ +PGPSS S+A + GPSS + +PG SS S++
Sbjct: 4837 RVSTPTSVPGPSSTVITERVSTATSVTGPSSIATTERVYTPTSVPGSSSRVTSAAVSTST 4896
Query: 289 DLPGPSSTV 297
+ GPSS V
Sbjct: 4897 SVTGPSSMV 4905
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 120/309 (38%), Gaps = 29/309 (9%)
Query: 18 STVT-ERP-LEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
STVT ER + GPSS + S+ + GPSS S+ + G SS
Sbjct: 4579 STVTTERTSTHTSVTGPSSTVTMERTSTPTSVTGPSSTATTEKVSTPTSVTGLSSTVTTE 4638
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G S+ + PSS S+ + GPSS G S+ + GPSS S+
Sbjct: 4639 GVSTPTSVTRPSSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPT 4698
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
+ GPSS S+ + GPSS S+ + GPSS G S+ + GPS
Sbjct: 4699 SVTGPSSTATTERVSTPTSVTGPSSTATTERTSTRTSVTGPSSTVTTEGVSTPTSVTGPS 4758
Query: 196 SAPDLPGPSSAPDLPGPSSA---------------------------PDLPGPSSAPDLP 228
S S+ + GPSS +PGP+S
Sbjct: 4759 STATTERTSTPTSVTGPSSMVTTKRTSTSTSVTGPSSTATTERVSTPTSVPGPTSTVTTE 4818
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
S+ +PGPSS S+ +PGPSS S+A + GPSS +
Sbjct: 4819 RVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVSTATSVTGPSSIATTERVYTPT 4878
Query: 289 DLPGPSSTV 297
+PG SS V
Sbjct: 4879 SVPGSSSRV 4887
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 113/296 (38%), Gaps = 27/296 (9%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+ GPSS S+ + GPSS S+ + GPSS S+ +PG SS
Sbjct: 4520 VTGPSSTATTERTSTPTSVTGPSSTATTEKVSTPTSVTGPSSTATTERVSTPTSVPGSSS 4579
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
S+ + GPSS + S+ + GPSS S+ + G SS G
Sbjct: 4580 TVTTERTSTHTSVTGPSSTVTMERTSTPTSVTGPSSTATTEKVSTPTSVTGLSSTVTTEG 4639
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
S+ + PSS S+ + GPSS G S+ + GPSS S+
Sbjct: 4640 VSTPTSVTRPSSTATTERTSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTS 4699
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
+ GPSS S+ + GPSS S+ + GPSS G S+ + GPSS
Sbjct: 4700 VTGPSSTATTERVSTPTSVTGPSSTATTERTSTRTSVTGPSSTVTTEGVSTPTSVTGPSS 4759
Query: 269 APDLPGPSSAPDLPGPSSA---------------------------PDLPGPSSTV 297
S+ + GPSS +PGP+STV
Sbjct: 4760 TATTERTSTPTSVTGPSSMVTTKRTSTSTSVTGPSSTATTERVSTPTSVPGPTSTV 4815
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 98/256 (38%), Gaps = 39/256 (15%)
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
PS+A P+S L + + P+S + GPSS S+ LPGPSS
Sbjct: 4274 PSTAITTSTPTSETGLSSTVTTGRVSIPTS---VTGPSSTVTTERVSTPMSLPGPSSMVT 4330
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-------------------------- 170
S+ + GPSS S+ + GPSS
Sbjct: 4331 SGVVSTTTSVTGPSSKATTKRVSTRTSVTGPSSMVTTKRTSTSTSVTGPSSTATTERVST 4390
Query: 171 -PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
+PGP+S S+ +PGPSS S+ +PGPSS S+A + G
Sbjct: 4391 PTSVPGPTSTVTTERVSTPTSVPGPSSTVTTERVSTPTSVPGPSSTVITERVSTATSVTG 4450
Query: 230 PSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 280
PSS +PG SS S++ + GPSS S+ + GPSS
Sbjct: 4451 PSSIATTERVYTPTSVPGSSSRVTSAAVSTSTSVTGPSSMVTTERTSTPTSVTGPSSTAT 4510
Query: 281 LPGPSSAPDLPGPSST 296
SS + GPSST
Sbjct: 4511 TEKVSSPTSVTGPSST 4526
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 115/308 (37%), Gaps = 29/308 (9%)
Query: 18 STVTERPLEP--DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
STVT + + GPSS G S+ + GPSS S+ + GPSS
Sbjct: 5335 STVTTEKVSTPTSVTGPSSTVTTEGVSTPTSVTGPSSTATTERTSTPTSVTGPSSTVTTE 5394
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---------P 126
G S+ + GPSS S+ + G SS S+ + GPSS
Sbjct: 5395 GVSTPTSVTGPSSTATTERTSTPTSVTGSSSTATTERVSTPTSVMGPSSTVTTERVSTPT 5454
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
+PGPSS S+ +PGPSS S+ + GPSS + +PG S
Sbjct: 5455 SVPGPSSTVTTERVSTPTSVPGPSSPVITERVSTPTSVTGPSSIATTERVYTPTSVPGSS 5514
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDL------------PGPSSAPDLPGPSS 232
S S++ + GPSS S ++ D P + L G
Sbjct: 5515 SRVTSAAVSTSTSVTGPSSMVTTERTSTPTSCDRTLLHSDHREGLHPHECARTHLHGDHR 5574
Query: 233 APDLPGPSSAPDLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
P + L + +PGPSS S++ + GPSS S+
Sbjct: 5575 EGVHPNKCARTLLHATTERVYTPTSMPGPSSTVTSAAVSTSTSVTGPSSMVTTERTSTRT 5634
Query: 289 DLPGPSST 296
+ GPSST
Sbjct: 5635 SVTGPSST 5642
>gi|460246|gb|AAC46611.1| a2 (IV) basement membrane collagen [Brugia malayi]
Length = 1802
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 113/295 (38%), Gaps = 34/295 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P LPG P LPG P PGP AP PG P L G P LPG AP L
Sbjct: 1111 PGLPGEKGIPGLPGKQGRPGAPGPKGLDGAPGFPGLKGEPGLAG---LPGLPGQIGAPGL 1167
Query: 84 PGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG- 139
PGP PG + AP LPG P + G +P +PG L G PG
Sbjct: 1168 PGPKGDAGFPGQAGLPGAPGLPGKMGVPGIRGDKGSPGIPGAYGERGLDGLPGQKGEPGY 1227
Query: 140 --------------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDL 182
AP PG P PG P LPG + PG P L
Sbjct: 1228 PGLQGPIGPPGPKGNVGAPGYPGVKGLPGFPGKDGLPGLPGIKGDAGIQGPPGKDGFPGL 1287
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
PG LPG P PG S A L G AP LPG P LPG P +PG
Sbjct: 1288 PGQKGEAGLPG---LPGSPGASIA-GLKGSPGAPGLPGKDGLPGLPGMKGEPGIPG---Y 1340
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
P +PG P LPG A PG P L G P PG + P LPG V
Sbjct: 1341 PGIPGAKGEPGLPGIPGAKGEPGLPGLPGLRGKDGLPGSPGVAGLPGLPGAKGDV 1395
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 112/315 (35%), Gaps = 65/315 (20%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSS---- 79
P LPG AP LPGP PG + AP LPG P + G +P +PG
Sbjct: 1156 PGLPGQIGAPGLPGPKGDAGFPGQAGLPGAPGLPGKMGVPGIRGDKGSPGIPGAYGERGL 1215
Query: 80 -----------------------------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 110
AP PG P PG P LPG +
Sbjct: 1216 DGLPGQKGEPGYPGLQGPIGPPGPKGNVGAPGYPGVKGLPGFPGKDGLPGLPGIKGDAGI 1275
Query: 111 ---PGPSSAPDLPGPSSAPDLPG-PSS-------------APDLPGPSSAPDLPGPSSAP 153
PG P LPG LPG P S AP LPG P LPG P
Sbjct: 1276 QGPPGKDGFPGLPGQKGEAGLPGLPGSPGASIAGLKGSPGAPGLPGKDGLPGLPGMKGEP 1335
Query: 154 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 213
+PG P +PG P LPG A PG P L G P PG + P LPG
Sbjct: 1336 GIPG---YPGIPGAKGEPGLPGIPGAKGEPGLPGLPGLRGKDGLPGSPGVAGLPGLPGAK 1392
Query: 214 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 273
L G AP LPG P L G P PGP P +PG P PG +
Sbjct: 1393 GDVGLSGAPGAPGLPG---LPGLKGEPGLPGFPGPKGEPGIPG---KPGFPGSQG---VK 1443
Query: 274 GPSSAPDLPGPSSAP 288
G P PG AP
Sbjct: 1444 GDCGTPGAPGRDGAP 1458
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 114/339 (33%), Gaps = 72/339 (21%)
Query: 17 PSTVTERPLE--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 74
P ER + P LPG P PG PG P +PG G
Sbjct: 1010 PGVKGERGIAGLPGLPGVEGVPGYPG------APGKDGIPGIPGEKGERGFNGLPGEKGE 1063
Query: 75 PGPSSAPDLPGPSSAPDLPG-----------------------PSSAPDLPGPSSAPDLP 111
PGP++ G + P PG AP LPG P LP
Sbjct: 1064 PGPAARDGAKGEAGLPGAPGLRGPQGPPGLPGLPGIKGEDGKPGYGAPGLPGEKGIPGLP 1123
Query: 112 GPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 168
G P PGP AP PG P L G P LPG AP LPGP PG +
Sbjct: 1124 GKQGRPGAPGPKGLDGAPGFPGLKGEPGLAG---LPGLPGQIGAPGLPGPKGDAGFPGQA 1180
Query: 169 ---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG----------------------- 202
AP LPG P + G +P +PG L G
Sbjct: 1181 GLPGAPGLPGKMGVPGIRGDKGSPGIPGAYGERGLDGLPGQKGEPGYPGLQGPIGPPGPK 1240
Query: 203 -PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPG-- 256
AP PG P PG P LPG + PG P LPG LPG
Sbjct: 1241 GNVGAPGYPGVKGLPGFPGKDGLPGLPGIKGDAGIQGPPGKDGFPGLPGQKGEAGLPGLP 1300
Query: 257 ---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+S L G AP LPG P LPG P +PG
Sbjct: 1301 GSPGASIAGLKGSPGAPGLPGKDGLPGLPGMKGEPGIPG 1339
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 107/298 (35%), Gaps = 35/298 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDL 83
P G + P LPG PG + P PG LPG L G + AP L
Sbjct: 914 PGQKGDAGFPGLPGAEGPAGPPGVAGLPGFPGQKGEDGLPGLPGVAGLKGDAGLPGAPGL 973
Query: 84 PGPSSAPDLP---------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 128
PG P P G + P LPG G + P LPG P
Sbjct: 974 PGADGKPGFPELKGQGGPPGPPGSKGDAGLPGLPGAPGVKGERGIAGLPGLPGVEGVPGY 1033
Query: 129 ---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
PG P +PG G PGP++ G + P PG PG
Sbjct: 1034 PGAPGKDGIPGIPGEKGERGFNGLPGEKGEPGPAARDGAKGEAGLPGAPGLRGPQGPPGL 1093
Query: 186 SSAPDLPGP-----SSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLP 237
P + G AP LPG P LPG P PGP AP PG P L
Sbjct: 1094 PGLPGIKGEDGKPGYGAPGLPGEKGIPGLPGKQGRPGAPGPKGLDGAPGFPGLKGEPGLA 1153
Query: 238 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPG 292
G P LPG AP LPGP PG + AP LPG P + G +P +PG
Sbjct: 1154 G---LPGLPGQIGAPGLPGPKGDAGFPGQAGLPGAPGLPGKMGVPGIRGDKGSPGIPG 1208
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 103/294 (35%), Gaps = 34/294 (11%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP------------- 66
V P P G P LPG + G AP LPG P P
Sbjct: 937 VAGLPGFPGQKGEDGLPGLPGVAGLKGDAGLPGAPGLPGADGKPGFPELKGQGGPPGPPG 996
Query: 67 --GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
G + P LPG G + P LPG P PG PG P +PG
Sbjct: 997 SKGDAGLPGLPGAPGVKGERGIAGLPGLPGVEGVPGYPG------APGKDGIPGIPGEKG 1050
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
G PGP++ G + P PG PG P + G P
Sbjct: 1051 ERGFNGLPGEKGEPGPAARDGAKGEAGLPGAPGLRGPQGPPGLPGLPGIKGEDGKPGY-- 1108
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP LPG P LPG P PGP AP PG P L G P LPG
Sbjct: 1109 --GAPGLPGEKGIPGLPGKQGRPGAPGPKGLDGAPGFPGLKGEPGLAG---LPGLPGQIG 1163
Query: 242 APDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
AP LPGP PG + AP LPG P + G +P +PG L G
Sbjct: 1164 APGLPGPKGDAGFPGQAGLPGAPGLPGKMGVPGIRGDKGSPGIPGAYGERGLDG 1217
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 79/194 (40%), Gaps = 24/194 (12%)
Query: 16 LPSTVTERPLEPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 73
LP E L P LPG +S L G AP LPG P LPG P +PG P
Sbjct: 1287 LPGQKGEAGL-PGLPGSPGASIAGLKGSPGAPGLPGKDGLPGLPGMKGEPGIPG---YPG 1342
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
+PG P LPG +PG P LPG P L G P PG + P LPG
Sbjct: 1343 IPGAKGEPGLPG------IPGAKGEPGLPG---LPGLRGKDGLPGSPGVAGLPGLPGAKG 1393
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
L G AP LPG P L G P PGP P +PG P PG + G
Sbjct: 1394 DVGLSGAPGAPGLPG---LPGLKGEPGLPGFPGPKGEPGIPG---KPGFPGSQG---VKG 1444
Query: 194 PSSAPDLPGPSSAP 207
P PG AP
Sbjct: 1445 DCGTPGAPGRDGAP 1458
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 94/281 (33%), Gaps = 53/281 (18%)
Query: 65 LPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 121
LPGP LPG + P LPG PG + P PG LPG L G
Sbjct: 904 LPGPPGVDGLPGQKGDAGFPGLPGAEGPAGPPGVAGLPGFPGQKGEDGLPGLPGVAGLKG 963
Query: 122 PS---SAPDLPGPSSAPDLP---------------GPSSAPDLPGPSSAPDLPGPSSAPD 163
+ AP LPG P P G + P LPG G + P
Sbjct: 964 DAGLPGAPGLPGADGKPGFPELKGQGGPPGPPGSKGDAGLPGLPGAPGVKGERGIAGLPG 1023
Query: 164 LPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
LPG P PG P +PG G PGP++ G + P PG
Sbjct: 1024 LPGVEGVPGYPGAPGKDGIPGIPGEKGERGFNGLPGEKGEPGPAARDGAKGEAGLPGAPG 1083
Query: 221 -----------------------PSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDL 254
AP LPG P LPG P PGP AP
Sbjct: 1084 LRGPQGPPGLPGLPGIKGEDGKPGYGAPGLPGEKGIPGLPGKQGRPGAPGPKGLDGAPGF 1143
Query: 255 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
PG P L G P LPG AP LPGP PG +
Sbjct: 1144 PGLKGEPGLAG---LPGLPGQIGAPGLPGPKGDAGFPGQAG 1181
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 108/288 (37%), Gaps = 34/288 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---- 82
P LPGP LPG A PG P PG P PG P LPG P
Sbjct: 589 PGLPGPQGERGLPGVPGAQGPPGDDGMPGAPGRPGPPGPPGKDGIPGLPGQKGEPTHMLL 648
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
PGP G + P LPG P GP PG + P +PGP P PG +
Sbjct: 649 RPGPPGYRGQKGEAGFPGLPGQVGLPGKSGP------PGLTGLPGIPGPKGEPGFPGLTG 702
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS------ 196
PG P PG AP P P LPG LPG A GP
Sbjct: 703 K---PGKDGLPGFPGFKGAPGYGAP-GLPGLPGQKGEAGLPGLPGAQGPVGPMGPPVAES 758
Query: 197 --APDLPGPSSAPDLPGP---SSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGP 248
P PG P LPGP + P LPG + LPGP A LPGP PG
Sbjct: 759 QLKPGPPGKDGLPGLPGPKGDAGYPGLPGKEVSLGFQGLPGPKGAEGLPGP------PGA 812
Query: 249 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
+ P LPGP PG G + P LPG A PG S T
Sbjct: 813 AGQPGLPGPKGNAGKPGLPGLQGQKGETGYPGLPGLPGAKGEPGLSMT 860
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 111/341 (32%), Gaps = 80/341 (23%)
Query: 20 VTERPLEPDLPGPSSAPDLPGP---SSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPD 73
V E L+P PG P LPGP + P LPG + LPGP A LPGP
Sbjct: 755 VAESQLKPGPPGKDGLPGLPGPKGDAGYPGLPGKEVSLGFQGLPGPKGAEGLPGP----- 809
Query: 74 LPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----------- 119
PG + P LPGP + P LPG G P LPG P L
Sbjct: 810 -PGAAGQPGLPGPKGNAGKPGLPGLQGQKGETGYPGLPGLPGAKGEPGLSMTGPPGPPGF 868
Query: 120 ---------------------------PGPSSAPDLPGPSSAPDLPGP---SSAPDLPGP 149
G LPGP LPG + P LPG
Sbjct: 869 PGLKGNDGFPGPPGPPGPEGPRGLPGIGGFKGDAGLPGPPGVDGLPGQKGDAGFPGLPGA 928
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLP----- 201
PG + P PG LPG L G + AP LPG P P
Sbjct: 929 EGPAGPPGVAGLPGFPGQKGEDGLPGLPGVAGLKGDAGLPGAPGLPGADGKPGFPELKGQ 988
Query: 202 ----------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
G + P LPG G + P LPG P PG PG
Sbjct: 989 GGPPGPPGSKGDAGLPGLPGAPGVKGERGIAGLPGLPGVEGVPGYPG------APGKDGI 1042
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P +PG G PGP++ G + P PG
Sbjct: 1043 PGIPGEKGERGFNGLPGEKGEPGPAARDGAKGEAGLPGAPG 1083
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 99/361 (27%), Positives = 110/361 (30%), Gaps = 94/361 (26%)
Query: 26 EPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----------------- 65
+P LPGP + P LPG G P LPG P L
Sbjct: 815 QPGLPGPKGNAGKPGLPGLQGQKGETGYPGLPGLPGAKGEPGLSMTGPPGPPGFPGLKGN 874
Query: 66 ---------------------PGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDL 101
G LPGP LPG + P LPG
Sbjct: 875 DGFPGPPGPPGPEGPRGLPGIGGFKGDAGLPGPPGVDGLPGQKGDAGFPGLPGAEGPAGP 934
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLP----------- 147
PG + P PG LPG L G + AP LPG P P
Sbjct: 935 PGVAGLPGFPGQKGEDGLPGLPGVAGLKGDAGLPGAPGLPGADGKPGFPELKGQGGPPGP 994
Query: 148 ----GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDL 200
G + P LPG G + P LPG P PG P +PG
Sbjct: 995 PGSKGDAGLPGLPGAPGVKGERGIAGLPGLPGVEGVPGYPGAPGKDGIPGIPGEKGERGF 1054
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----------------------PSSAPDLP 237
G PGP++ G + P PG AP LP
Sbjct: 1055 NGLPGEKGEPGPAARDGAKGEAGLPGAPGLRGPQGPPGLPGLPGIKGEDGKPGYGAPGLP 1114
Query: 238 GPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
G P LPG P PGP AP PG P L G P LPG AP LPGP
Sbjct: 1115 GEKGIPGLPGKQGRPGAPGPKGLDGAPGFPGLKGEPGLAG---LPGLPGQIGAPGLPGPK 1171
Query: 295 S 295
Sbjct: 1172 G 1172
>gi|281416568|ref|ZP_06247588.1| cellulosome anchoring protein cohesin region [Clostridium
thermocellum JW20]
gi|281407970|gb|EFB38228.1| cellulosome anchoring protein cohesin region [Clostridium
thermocellum JW20]
Length = 1790
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 153/329 (46%), Gaps = 49/329 (14%)
Query: 17 PSTVTERPLEPDLPGPSSAP-DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSA 71
PS E P+ D P P D P PS P D P PS P+ P P+ P D P PS
Sbjct: 1152 PSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDE 1211
Query: 72 P---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---D 118
P D P PS P D P PS P+ P P+ P D P PS P D P PS P D
Sbjct: 1212 PTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSD 1271
Query: 119 LPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP 171
P PS P+ P P+ P D P PS P D P PS P D P PS P+ P P+ P
Sbjct: 1272 EPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTP 1331
Query: 172 -DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPG 220
D P PS P D P PS P D P PS P+ P P+ P D P PS P D P
Sbjct: 1332 SDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPT 1391
Query: 221 PSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAPDLPGPSSAP--- 270
PS P D P PS P+ P P+ P D P PS P D P PS P+ P PS P
Sbjct: 1392 PSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSETPEEPTPSDEPTPS 1451
Query: 271 DLPGPSSAPDLPGPSSAP---DLPGPSST 296
D P PS P+ P PS P D P PS T
Sbjct: 1452 DEPTPSETPEEPTPSDEPTPSDEPTPSET 1480
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 122/287 (42%), Positives = 135/287 (47%), Gaps = 44/287 (15%)
Query: 28 DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGP 77
D P PS P D P PS P D P PS P+ P P+ P D P PS P D P P
Sbjct: 1204 DEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTP 1263
Query: 78 SSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPD 127
S P D P PS P+ P P+ P D P PS P D P PS P D P PS P+
Sbjct: 1264 SDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPE 1323
Query: 128 LPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSA 179
P P+ P D P PS P D P PS P D P PS P+ P P+ P D P PS
Sbjct: 1324 EPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDE 1383
Query: 180 P---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAPDLPG 229
P D P PS P D P PS P+ P P+ P D P PS P D P PS P+ P
Sbjct: 1384 PTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSETPEEPT 1443
Query: 230 PSSAP---DLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAP 270
PS P D P PS P+ P PS P D P PS P+ P PS P
Sbjct: 1444 PSDEPTPSDEPTPSETPEEPTPSDEPTPSDEPTPSETPEEPTPSDEP 1490
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 130/312 (41%), Positives = 146/312 (46%), Gaps = 55/312 (17%)
Query: 28 DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---------DLPGPSSAPDL 74
D P PS P D P PS P+ P P+ P D P PS P D P PS P+
Sbjct: 988 DEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEE 1047
Query: 75 PGPSSAP-DLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAP--- 126
P P+ P D P PS P D P PS D P PS P+ P P+ P D P PS P
Sbjct: 1048 PIPTDTPSDEPTPSDEPTPSDEPTPS---DEPTPSETPEEPIPTDTPSDEPTPSDEPTPS 1104
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAPDLPGPSSAPDL 182
D P PS D P PS P+ P P+ P D P PS P D P PS D P PS P+
Sbjct: 1105 DEPTPS---DEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPS---DEPTPSETPEE 1158
Query: 183 PGPSSAP-DLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAP--- 234
P P+ P D P PS P D P PS D P PS P+ P P+ P D P PS P
Sbjct: 1159 PIPTDTPSDEPTPSDEPTPSDEPTPS---DEPTPSETPEEPIPTDTPSDEPTPSDEPTPS 1215
Query: 235 DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGP 284
D P PS P D P PS P+ P P+ P D P PS P D P PS P D P P
Sbjct: 1216 DEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTP 1275
Query: 285 SSAPDLPGPSST 296
S P+ P P+ T
Sbjct: 1276 SETPEEPIPTDT 1287
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 101/212 (47%), Gaps = 31/212 (14%)
Query: 27 PDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPS 78
P+ P P+ P D P PS P D P PS P D P PS P+ P P+ P D P PS
Sbjct: 1279 PEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPS 1338
Query: 79 SAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP-- 126
P D P PS P D P PS P+ P P+ P D P PS P D P PS P
Sbjct: 1339 DEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTP 1398
Query: 127 -DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAPDLPGPSSAP---DLPGPSS 178
D P PS P+ P P+ P D P PS P D P PS P+ P PS P D P PS
Sbjct: 1399 SDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSETPEEPTPSDEPTPSDEPTPSE 1458
Query: 179 APDLPGPSSAP---DLPGPSSAPDLPGPSSAP 207
P+ P PS P D P PS P+ P PS P
Sbjct: 1459 TPEEPTPSDEPTPSDEPTPSETPEEPTPSDEP 1490
>gi|296881|emb|CAA47841.1| S-layer protein [Clostridium thermocellum]
Length = 1664
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 136/323 (42%), Positives = 150/323 (46%), Gaps = 54/323 (16%)
Query: 28 DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGP 77
D P PS P D P PS P D P PS P+ P P+ P D P PS P D P P
Sbjct: 780 DEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTP 839
Query: 78 SSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPD 127
S P D P PS P+ P P+ P D P PS P D P PS P D P PS P+
Sbjct: 840 SDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPE 899
Query: 128 LPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSA 179
P P+ P D P PS P D P PS P D P PS P+ P P+ P D P PS
Sbjct: 900 EPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDE 959
Query: 180 P---DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---D 226
P D P PS P D P PS P D P PS P+ P P+ P D P PS P D
Sbjct: 960 PTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSD 1019
Query: 227 LPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPS 276
P PS P D P PS P D P PS P+ P P+ P D P PS P D P PS
Sbjct: 1020 EPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPS 1079
Query: 277 SAP---DLPGPSSAPDLPGPSST 296
P D P PS P+ P P+ T
Sbjct: 1080 DEPTPSDEPTPSETPEEPIPTDT 1102
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 149/319 (46%), Gaps = 52/319 (16%)
Query: 28 DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGP 77
D P PS P D P PS P+ P P+ P D P PS P D P PS P D P P
Sbjct: 792 DEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTP 851
Query: 78 SSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLP 129
S P+ P P+ P D P PS P D P PS P D P PS P+ P P+ P D P
Sbjct: 852 SETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEP 911
Query: 130 GPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSA 179
PS P D P PS P D P PS P+ P P+ P D P PS P D P PS
Sbjct: 912 TPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDE 971
Query: 180 P---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---D 226
P D P PS P D P PS P+ P P+ P D P PS P D P PS P D
Sbjct: 972 PTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSD 1031
Query: 227 LPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPS 276
P PS P D P PS P+ P P+ P D P PS P D P PS P D P PS
Sbjct: 1032 EPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPS 1091
Query: 277 SAPDLPGPSSAP-DLPGPS 294
P+ P P+ P D P PS
Sbjct: 1092 ETPEEPIPTDTPSDEPTPS 1110
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 137/325 (42%), Positives = 151/325 (46%), Gaps = 55/325 (16%)
Query: 27 PDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPG 76
P+ P P+ P D P PS P D P PS P D P PS P D P PS P+ P
Sbjct: 941 PEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPI 1000
Query: 77 PSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP 126
P+ P D P PS P D P PS P D P PS P D P PS P+ P P+ P
Sbjct: 1001 PTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTP 1060
Query: 127 -DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPG 175
D P PS P D P PS P D P PS P+ P P+ P D P PS P D P
Sbjct: 1061 SDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPT 1120
Query: 176 PSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP 225
PS P D P PS P+ P P+ P D P PS P D P PS P D P PS P
Sbjct: 1121 PSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETP 1180
Query: 226 DLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSS 277
+ P P+ P D P PS P D P PS P D P PS P+ P P+ P D P PS
Sbjct: 1181 EEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSD 1240
Query: 278 AP---DLPGPSSAP---DLPGPSST 296
P D P PS P D P PS T
Sbjct: 1241 EPTPSDEPTPSDEPTPSDEPTPSET 1265
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 123/291 (42%), Positives = 135/291 (46%), Gaps = 48/291 (16%)
Query: 28 DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGP 77
D P PS P D P PS P+ P P+ P D P PS P D P PS P D P P
Sbjct: 1074 DEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTP 1133
Query: 78 SSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLP 129
S P+ P P+ P D P PS P D P PS P D P PS P+ P P+ P D P
Sbjct: 1134 SETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEP 1193
Query: 130 GPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSA 179
PS P D P PS P D P PS P+ P P+ P D P PS P D P PS
Sbjct: 1194 TPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDE 1253
Query: 180 P---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP---D 226
P D P PS P+ P P+ P D P PS P D P PS P D P PS P D
Sbjct: 1254 PTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSD 1313
Query: 227 LPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP 270
P PS P+ P P+ P D P PS P D P PS P D P PS P
Sbjct: 1314 EPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEP 1364
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 114/271 (42%), Positives = 126/271 (46%), Gaps = 45/271 (16%)
Query: 27 PDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPS 78
P+ P P+ P D P PS P D P PS P D P PS P+ P P+ P D P PS
Sbjct: 1094 PEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPS 1153
Query: 79 SAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP-- 126
P D P PS P D P PS P+ P P+ P D P PS P D P PS P
Sbjct: 1154 DEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTP 1213
Query: 127 -DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSS 178
D P PS P+ P P+ P D P PS P D P PS P D P PS P+ P P+
Sbjct: 1214 SDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTD 1273
Query: 179 AP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DL 227
P D P PS P D P PS P D P PS P D P PS P+ P P+ P D
Sbjct: 1274 TPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDE 1333
Query: 228 PGPSSAP---DLPGPSSAP---DLPGPSSAP 252
P PS P D P PS P D P PS P
Sbjct: 1334 PTPSDEPTPSDEPTPSDEPTPSDEPTPSDEP 1364
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 73/156 (46%), Gaps = 27/156 (17%)
Query: 28 DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSA 80
D P PS P+ P P+ P D P PS P D P PS P D P PS P+ P P+
Sbjct: 1215 DEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDT 1274
Query: 81 P-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLP 129
P D P PS P D P PS P D P PS P D P PS P+ P P+ P D P
Sbjct: 1275 PSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEP 1334
Query: 130 GPSSAPDLPGPSSAP---DLPGPSSAP---DLPGPS 159
PS D P PS P D P PS P D P PS
Sbjct: 1335 TPS---DEPTPSDEPTPSDEPTPSDEPTPSDEPTPS 1367
>gi|307202580|gb|EFN81915.1| hypothetical protein EAI_14096 [Harpegnathos saltator]
Length = 1637
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 96/279 (34%), Positives = 116/279 (41%), Gaps = 18/279 (6%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP------SSAPDLPG 76
+P P +PG P PG P P P +PG P +PG SS P P
Sbjct: 526 KPGSPGIPGTPGIPGTPGIPGRPGTPAIIGTPGIPGRPGTPGIPGTPSISIISSYPGYPA 585
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
+P +PG P +PG AP PG P +PG P P S P PG P
Sbjct: 586 IPGSPGIPG---TPAIPGSPGAPGTPGRPGVPSIPGRPGIPGSPTISVVPSYPG---HPI 639
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
PG S P PG S P PG +P PG +PG S P PG P +PG
Sbjct: 640 TPGSSGTPGTPGSPSFPGFPGTPGSPGFPGIPGTQGIPGTSGTPGTPGRPGTPGIPGRPG 699
Query: 197 APDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
P PG S P PG + P+ PG AP + G +P PG +P PG
Sbjct: 700 IPGSPGTSIISIVPSYPGYPAIPESPGSPGAPGISGFPGSPGTPGIFGSPGTPGKPGTSG 759
Query: 254 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
PG +S P +P S P P S +P PG S +P PG
Sbjct: 760 SPGIASIPAIP---SYPGHPAISGSPGTPGTSGSPGFPG 795
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 109/269 (40%), Gaps = 12/269 (4%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P LPG S P P S P PG S +P+LP P PG P PG P PG
Sbjct: 485 PGLPGTSGKPGTP---SYPGHPGISVSPELP---EVPSYPGHFETPSKPGSPGIPGTPGI 538
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
P +PG P + G P PG P P S PG + P PG P +
Sbjct: 539 PGTPGIPGRPGTPAIIGTPGIPGRPGTPGIPGTPSISIISSYPGYPAIPGSPGIPGTPAI 598
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
PG AP PG P +PG P P S P PG P PG S P PG S
Sbjct: 599 PGSPGAPGTPGRPGVPSIPGRPGIPGSPTISVVPSYPG---HPITPGSSGTPGTPGSPSF 655
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDL 263
P PG +P PG +PG S P PG P +PG P PG S P
Sbjct: 656 PGFPGTPGSPGFPGIPGTQGIPGTSGTPGTPGRPGTPGIPGRPGIPGSPGTSIISIVPSY 715
Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
PG + P+ PG AP + G +P PG
Sbjct: 716 PGYPAIPESPGSPGAPGISGFPGSPGTPG 744
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 108/266 (40%), Gaps = 9/266 (3%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG S P PG S +P+LP P PG P PG P PG P +PG
Sbjct: 494 PGTPSYPGHPGISVSPELP---EVPSYPGHFETPSKPGSPGIPGTPGIPGTPGIPGRPGT 550
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
P + G P PG P P S PG + P PG P +PG AP PG
Sbjct: 551 PAIIGTPGIPGRPGTPGIPGTPSISIISSYPGYPAIPGSPGIPGTPAIPGSPGAPGTPGR 610
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
P +PG P P S P PG P PG S P PG S P PG +P
Sbjct: 611 PGVPSIPGRPGIPGSPTISVVPSYPG---HPITPGSSGTPGTPGSPSFPGFPGTPGSPGF 667
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGP 266
PG +PG S P PG P +PG P PG S P PG + P+ PG
Sbjct: 668 PGIPGTQGIPGTSGTPGTPGRPGTPGIPGRPGIPGSPGTSIISIVPSYPGYPAIPESPGS 727
Query: 267 SSAPDLPGPSSAPDLPGPSSAPDLPG 292
AP + G +P PG +P PG
Sbjct: 728 PGAPGISGFPGSPGTPGIFGSPGTPG 753
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 105/261 (40%), Gaps = 12/261 (4%)
Query: 35 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 94
P LPG S P P S P PG S +P+LP P PG P PG P PG
Sbjct: 484 TPGLPGTSGKPGTP---SYPGHPGISVSPELP---EVPSYPGHFETPSKPGSPGIPGTPG 537
Query: 95 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 154
P +PG P + G P PG P P S PG + P PG P
Sbjct: 538 IPGTPGIPGRPGTPAIIGTPGIPGRPGTPGIPGTPSISIISSYPGYPAIPGSPGIPGTPA 597
Query: 155 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 214
+PG AP PG P +PG P P S P PG P PG S P PG S
Sbjct: 598 IPGSPGAPGTPGRPGVPSIPGRPGIPGSPTISVVPSYPG---HPITPGSSGTPGTPGSPS 654
Query: 215 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPD 271
P PG +P PG +PG S P PG P +PG P PG S P
Sbjct: 655 FPGFPGTPGSPGFPGIPGTQGIPGTSGTPGTPGRPGTPGIPGRPGIPGSPGTSIISIVPS 714
Query: 272 LPGPSSAPDLPGPSSAPDLPG 292
PG + P+ PG AP + G
Sbjct: 715 YPGYPAIPESPGSPGAPGISG 735
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 106/263 (40%), Gaps = 9/263 (3%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P P PG S +P+LP P PG P PG P PG P +PG P +
Sbjct: 497 PSYPGHPGISVSPELP---EVPSYPGHFETPSKPGSPGIPGTPGIPGTPGIPGRPGTPAI 553
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G P PG P P S PG + P PG P +PG AP PG
Sbjct: 554 IGTPGIPGRPGTPGIPGTPSISIISSYPGYPAIPGSPGIPGTPAIPGSPGAPGTPGRPGV 613
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
P +PG P P S P PG P PG S P PG S P PG +P PG
Sbjct: 614 PSIPGRPGIPGSPTISVVPSYPG---HPITPGSSGTPGTPGSPSFPGFPGTPGSPGFPGI 670
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSA 260
+PG S P PG P +PG P PG S P PG + P+ PG A
Sbjct: 671 PGTQGIPGTSGTPGTPGRPGTPGIPGRPGIPGSPGTSIISIVPSYPGYPAIPESPGSPGA 730
Query: 261 PDLPGPSSAPDLPGPSSAPDLPG 283
P + G +P PG +P PG
Sbjct: 731 PGISGFPGSPGTPGIFGSPGTPG 753
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 116/289 (40%), Gaps = 26/289 (8%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P P PG P +PG AP PG P +PG P P S P PG P
Sbjct: 584 PAIPGSPGIPGTPAIPGSPGAPGTPGRPGVPSIPGRPGIPGSPTISVVPSYPG---HPIT 640
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
PG S P PG S P PG +P PG +PG S P PG P +PG
Sbjct: 641 PGSSGTPGTPGSPSFPGFPGTPGSPGFPGIPGTQGIPGTSGTPGTPGRPGTPGIPGRPGI 700
Query: 144 PDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
P PG S P PG + P+ PG AP + G +P PG +P PG
Sbjct: 701 PGSPGTSIISIVPSYPGYPAIPESPGSPGAPGISGFPGSPGTPGIFGSPGTPGKPGTSGS 760
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------------PSSAPDLPGP 248
PG +S P +P S P P S +P PG S +P PG P +PG
Sbjct: 761 PGIASIPAIP---SYPGHPAISGSPGTPGTSGSPGFPGFPGTSGGPGFPGTPGIPGIPGV 817
Query: 249 SSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPG 292
P PG P +PG S P + G S P PG SS P PG
Sbjct: 818 PGRPGKPGTIYPGYPGIPGVSGIPSISGSPSTPGTSGKPGTSSYPGYPG 866
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 111/269 (41%), Gaps = 19/269 (7%)
Query: 18 STVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 77
S V P P PG S P PG S P PG +P PG +PG S P PG
Sbjct: 629 SVVPSYPGHPITPGSSGTPGTPGSPSFPGFPGTPGSPGFPGIPGTQGIPGTSGTPGTPGR 688
Query: 78 SSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
P +PG P PG S P PG + P+ PG AP + G +P PG +
Sbjct: 689 PGTPGIPGRPGIPGSPGTSIISIVPSYPGYPAIPESPGSPGAPGISGFPGSPGTPGIFGS 748
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
P PG PG +S P +P S P P S +P PG S +P PG PG
Sbjct: 749 PGTPGKPGTSGSPGIASIPAIP---SYPGHPAISGSPGTPGTSGSPGFPG------FPGT 799
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
S P PG P +PG P PG + P PG +P S +P PG S
Sbjct: 800 SGGPGFPGTPGIPGIPGVPGRPGKPG-TIYPGYPGIPGVSGIPSISGSPSTPGTSGK--- 855
Query: 255 PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
PG SS P PG S P P P PG
Sbjct: 856 PGTSSYPGYPGISDFPTSP---EGPSYPG 881
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 84/208 (40%), Gaps = 31/208 (14%)
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 167
PG S+ P+ G + PG S P +PG S+ P + P +PG + P +PG
Sbjct: 294 PGLSTYPEHSGTPGISERPGTPSRPVISAIPGISTKPGISAYPGTPGIPGTAGTPGIPGT 353
Query: 168 SSAPDLPGPSSAPDLPGPSSA------------------PDLPGPSSAPDLPGPSSAPD- 208
+ P + P PG S+ P PG + P+ PG P
Sbjct: 354 PNRPLISTIPGTPVKPGTSTYPGHPGTPGTPGTPGIHGIPGRPGTPTYPEHPGTPGRPST 413
Query: 209 --LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---L 263
PG S+P G S P PG + P +PG SS P PG S P PG S A +
Sbjct: 414 IGFPGIPSSPGHHGIPSIPGSPGSAGTPGIPGISSVPGKPGTSYYPGYPGTSGASGIFII 473
Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
PG S P + P LPG S P P
Sbjct: 474 PGSSGTPGI----GTPGLPGTSGKPGTP 497
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 105/268 (39%), Gaps = 36/268 (13%)
Query: 19 TVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 78
T++ P +P PG P PG P PG SS P S + PG P L GPS
Sbjct: 949 TISYYPGKPGRPGKPGLPGHPGKPGIPAYPGSSSFPSY---SHISETPG---KPLLSGPS 1002
Query: 79 SAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 137
G P++PG PS P D P S+ P PG P G
Sbjct: 1003 ------GTIGKPEIPGKPSGIAPFP---PHHDYPNTSNLPTRPGIHGIPGTSGIHLG--Y 1051
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
PG P +PG P +PG P PG AP +P + +PG +PG S
Sbjct: 1052 PGTPGTPGIPG---TPGIPG---VPGTPGTLGAPGIPFHPTYSGIPGTPGVLGIPGVPSH 1105
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
P P S+P PG S + PG S P PG PD G S G S P PG
Sbjct: 1106 PKYP---SSPGSPGTSISSGKPGIPSYPGYPG---IPDTSGTSGT---LGTSGKPGRPGT 1156
Query: 258 SSAP---DLPGPSSAPDLPGPSSAPDLP 282
SS P D P S P +P PD P
Sbjct: 1157 SSYPGYFDFPNTSGKPGIPTKPGKPDYP 1184
>gi|312073402|ref|XP_003139504.1| procollagen [Loa loa]
Length = 1783
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 112/293 (38%), Gaps = 34/293 (11%)
Query: 27 PDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P LPG P LPG AP G AP PG LPG AP +PG P L
Sbjct: 1105 PGLPGEKGIPGLPGKQGRQGAPGQKGLDGAPGFPGLKGDAGLPG---APGIPGQIGLPGL 1161
Query: 84 PGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDL 137
PG PG S AP LPG P + G P +PG LPG P L
Sbjct: 1162 PGQKGEAGFPGQSGLPGAPGLPGKMGVPGIRGDKGVPGIPGAPGDRGLDGLPGQKGEPGL 1221
Query: 138 PGPS------------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDL 182
PG AP PG P PG P LPG + PG P +
Sbjct: 1222 PGLQGPMGPPGPKGNIGAPGYPGIKGLPGFPGKDGLPGLPGIKGEVGMQGAPGKDGFPGI 1281
Query: 183 PGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
PG A + GP + A LPG P LPG P L G A + G + P +PG
Sbjct: 1282 PGQKGA-SIAGPKGNAGASGLPGKDGLPGLPGMKGEPGLSGYPGASGVKGEAGLPGIPGA 1340
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P LPG P L G P PG + P +PG LPG P PG
Sbjct: 1341 KGEPGLPG---LPGLRGKDGLPGAPGIAGLPGIPGAKGDAGLPGAPGVPGQPG 1390
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 111/298 (37%), Gaps = 41/298 (13%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDL 83
P PG LPG AP +PG P LPG PG S AP LPG P +
Sbjct: 1135 PGFPGLKGDAGLPG---APGIPGQIGLPGLPGQKGEAGFPGQSGLPGAPGLPGKMGVPGI 1191
Query: 84 PGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS------------SAPDLPGPSSAPDL 128
G P +PG LPG P LPG AP PG P
Sbjct: 1192 RGDKGVPGIPGAPGDRGLDGLPGQKGEPGLPGLQGPMGPPGPKGNIGAPGYPGIKGLPGF 1251
Query: 129 PGPSSAPDLPGPSSAPDL---PGPSSAPDLPGP-----------SSAPDLPGPSSAPDLP 174
PG P LPG + PG P +PG + A LPG P LP
Sbjct: 1252 PGKDGLPGLPGIKGEVGMQGAPGKDGFPGIPGQKGASIAGPKGNAGASGLPGKDGLPGLP 1311
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G P L G A + G + P +PG P LPG P L G P PG + P
Sbjct: 1312 GMKGEPGLSGYPGASGVKGEAGLPGIPGAKGEPGLPG---LPGLRGKDGLPGAPGIAGLP 1368
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG LPG AP +PG L G P PGP +PG P LPG
Sbjct: 1369 GIPGAKGDAGLPG---APGVPGQPGLLGLKGEPGLPGFPGPKGEAGIPGKPGLPGLPG 1423
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 116/299 (38%), Gaps = 44/299 (14%)
Query: 20 VTERPLEPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
V E L+P PG P LPGP + P PG P LPG LPGP + +PG
Sbjct: 749 VAESQLKPGPPGKDGLPGLPGPKGDAGYPGAPGKEGVPGLPG------LPGPKGSEGMPG 802
Query: 77 P---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---- 129
P P LPGP PG P L GP PG +P LPG P L
Sbjct: 803 PPGIDGQPGLPGPKGNAGKPG---LPGLQGPKGERGYPG---SPGLPGAKGEPGLSMTGP 856
Query: 130 -------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
G AP LPGP LPG S L G + P PG + P G
Sbjct: 857 PGPPGFPGLKGNDGLPGAPGLPGPEGPRGLPGVSG---LKGEAGLPGAPGIAGLPGQKGD 913
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSA 233
+ P LPG PG + AP PG LPG L G + AP LPG +
Sbjct: 914 AGFPGLPGAEGPVGPPGIAGAPGFPGQKGEDGLPGLPGVAGLKGEAGLPGAPGLPGAAGQ 973
Query: 234 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P PG LPG P G + P LPG A G + P LPG A PG
Sbjct: 974 PGFPGLKGQAGLPG---IPGAKGDAGLPGLPGAPGAKGERGLAGLPGLPGMKGASGYPG 1029
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 110/307 (35%), Gaps = 55/307 (17%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGP--- 77
P P +PG P LPG PG S AP LPG P + G P +PG
Sbjct: 1147 PGAPGIPGQIGLPGLPGQKGEAGFPGQSGLPGAPGLPGKMGVPGIRGDKGVPGIPGAPGD 1206
Query: 78 ------------------------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 107
AP PG P PG P LPG
Sbjct: 1207 RGLDGLPGQKGEPGLPGLQGPMGPPGPKGNIGAPGYPGIKGLPGFPGKDGLPGLPGIKGE 1266
Query: 108 PDL---PGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
+ PG P +PG A + GP + A LPG P LPG P L G A
Sbjct: 1267 VGMQGAPGKDGFPGIPGQKGA-SIAGPKGNAGASGLPGKDGLPGLPGMKGEPGLSGYPGA 1325
Query: 162 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 221
+ G + P +PG P LPG P L G P PG + P +PG LPG
Sbjct: 1326 SGVKGEAGLPGIPGAKGEPGLPG---LPGLRGKDGLPGAPGIAGLPGIPGAKGDAGLPG- 1381
Query: 222 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
AP +PG L G P PGP +PG P LPG L G P +
Sbjct: 1382 --APGVPGQPGLLGLKGEPGLPGFPGPKGEAGIPGKPGLPGLPG------LKGDCGVPGV 1433
Query: 282 PGPSSAP 288
PG AP
Sbjct: 1434 PGRDGAP 1440
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 105/282 (37%), Gaps = 19/282 (6%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPG 76
+ P P G P LPG + G AP LPG + P P G + P +PG
Sbjct: 931 IAGAPGFPGQKGEDGLPGLPGVAGLKGEAGLPGAPGLPGAAGQPGFPGLKGQAGLPGIPG 990
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
LPG AP G LPG P + G S P PG P +PG
Sbjct: 991 AKGDAGLPGLPGAPGAKGERGLAGLPG---LPGMKGASGYPGAPGKDGLPGIPGAKGERG 1047
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
G PGP++ G + P PG PG P + G + P
Sbjct: 1048 FNGLPGEKGEPGPAARDGAKGDAGLPGAPGLRGPQGPPGLPGLPGIKGEAGKPGY----G 1103
Query: 197 APDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
AP LPG P LPG AP G AP PG LPG AP +PG P
Sbjct: 1104 APGLPGEKGIPGLPGKQGRQGAPGQKGLDGAPGFPGLKGDAGLPG---APGIPGQIGLPG 1160
Query: 254 LPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG PG S AP LPG P + G P +PG
Sbjct: 1161 LPGQKGEAGFPGQSGLPGAPGLPGKMGVPGIRGDKGVPGIPG 1202
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 101/282 (35%), Gaps = 38/282 (13%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
AP LPGP LPG S L G + P PG + P G + P LPG P
Sbjct: 873 GAPGLPGPEGPRGLPGVSG---LKGEAGLPGAPGIAGLPGQKGDAGFPGLPGAEGPVGPP 929
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLP---GPSSAPDLP 156
G + AP PG LPG L G + AP LPG + P P G + P +P
Sbjct: 930 GIAGAPGFPGQKGEDGLPGLPGVAGLKGEAGLPGAPGLPGAAGQPGFPGLKGQAGLPGIP 989
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
G LPG AP G LPG P + G S P PG P +PG
Sbjct: 990 GAKGDAGLPGLPGAPGAKGERGLAGLPG---LPGMKGASGYPGAPGKDGLPGIPGAKGER 1046
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----------------------PSSAPD 253
G PGP++ G + P PG AP
Sbjct: 1047 GFNGLPGEKGEPGPAARDGAKGDAGLPGAPGLRGPQGPPGLPGLPGIKGEAGKPGYGAPG 1106
Query: 254 LPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P LPG AP G AP PG LPG
Sbjct: 1107 LPGEKGIPGLPGKQGRQGAPGQKGLDGAPGFPGLKGDAGLPG 1148
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 109/312 (34%), Gaps = 40/312 (12%)
Query: 17 PSTVTERPLE-----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 71
P ER L P + G S P PG P +PG G PGP++
Sbjct: 1004 PGAKGERGLAGLPGLPGMKGASGYPGAPGKDGLPGIPGAKGERGFNGLPGEKGEPGPAAR 1063
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
G + P PG PG P + G + P AP LPG P LPG
Sbjct: 1064 DGAKGDAGLPGAPGLRGPQGPPGLPGLPGIKGEAGKPGY----GAPGLPGEKGIPGLPGK 1119
Query: 132 ---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-- 186
AP G AP PG LPG AP +PG P LPG PG S
Sbjct: 1120 QGRQGAPGQKGLDGAPGFPGLKGDAGLPG---APGIPGQIGLPGLPGQKGEAGFPGQSGL 1176
Query: 187 -SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS----- 240
AP LPG P + G P +PG PG LPG P LPG
Sbjct: 1177 PGAPGLPGKMGVPGIRGDKGVPGIPG------APGDRGLDGLPGQKGEPGLPGLQGPMGP 1230
Query: 241 -------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDL 290
AP PG P PG P LPG + PG P +PG A +
Sbjct: 1231 PGPKGNIGAPGYPGIKGLPGFPGKDGLPGLPGIKGEVGMQGAPGKDGFPGIPGQKGA-SI 1289
Query: 291 PGPSSTVLGSYL 302
GP S L
Sbjct: 1290 AGPKGNAGASGL 1301
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 96/255 (37%), Gaps = 31/255 (12%)
Query: 3 APFDKHVFTEADYLPSTVTERPLEPDLPGPS--------SAPDLPGPSSAPDLPGPSSAP 54
AP D+ + D LP E L AP PG P PG P
Sbjct: 1203 APGDRGL----DGLPGQKGEPGLPGLQGPMGPPGPKGNIGAPGYPGIKGLPGFPGKDGLP 1258
Query: 55 DLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAP 108
LPG + PG P +PG A + GP + A LPG P LPG P
Sbjct: 1259 GLPGIKGEVGMQGAPGKDGFPGIPGQKGA-SIAGPKGNAGASGLPGKDGLPGLPGMKGEP 1317
Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 168
L G A + G + P +PG P LPG P L G P PG + P +PG
Sbjct: 1318 GLSGYPGASGVKGEAGLPGIPGAKGEPGLPG---LPGLRGKDGLPGAPGIAGLPGIPGAK 1374
Query: 169 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
LPG AP +PG L G P PGP +PG P LPG L
Sbjct: 1375 GDAGLPG---APGVPGQPGLLGLKGEPGLPGFPGPKGEAGIPGKPGLPGLPG------LK 1425
Query: 229 GPSSAPDLPGPSSAP 243
G P +PG AP
Sbjct: 1426 GDCGVPGVPGRDGAP 1440
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 100/289 (34%), Gaps = 57/289 (19%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGP---SSA 80
P PG P PG P LPG + PG P +PG A + GP + A
Sbjct: 1240 PGYPGIKGLPGFPGKDGLPGLPGIKGEVGMQGAPGKDGFPGIPGQKGA-SIAGPKGNAGA 1298
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
LPG P LPG P L G A + G + P +PG P LPG P L G
Sbjct: 1299 SGLPGKDGLPGLPGMKGEPGLSGYPGASGVKGEAGLPGIPGAKGEPGLPG---LPGLRGK 1355
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
P PG + P +PG LPG AP +PG L G P PGP +
Sbjct: 1356 DGLPGAPGIAGLPGIPGAKGDAGLPG---APGVPGQPGLLGLKGEPGLPGFPGPKGEAGI 1412
Query: 201 PGPSSAPDLPG---PSSAPDLPGPSSAPDL-----------------------PGPSSAP 234
PG P LPG P +PG AP GP P
Sbjct: 1413 PGKPGLPGLPGLKGDCGVPGVPGRDGAPGKIGEPGPMGPPGAEPLTLRGEKGDQGPMGVP 1472
Query: 235 DLPGPSSAPDLP------------------GPSSAPDLPGPSSAPDLPG 265
+ G P L G P LPG AP LPG
Sbjct: 1473 GIRGEKGLPGLDGLPGPSGPPGPPGLKGADGFPGLPGLPGEKGAPGLPG 1521
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 96/276 (34%), Gaps = 58/276 (21%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAP 72
LP E ++ PG P +PG A + GP + A LPG P LPG P
Sbjct: 1260 LPGIKGEVGMQ-GAPGKDGFPGIPGQKGA-SIAGPKGNAGASGLPGKDGLPGLPGMKGEP 1317
Query: 73 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
L G A + G + P +PG P LPG P L G P PG + P +PG
Sbjct: 1318 GLSGYPGASGVKGEAGLPGIPGAKGEPGLPG---LPGLRGKDGLPGAPGIAGLPGIPGAK 1374
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
LPG AP +PG L G P PGP +PG P LPG L
Sbjct: 1375 GDAGLPG---APGVPGQPGLLGLKGEPGLPGFPGPKGEAGIPGKPGLPGLPG------LK 1425
Query: 193 GPSSAPDLPGPSSAPDL-----------------------PGPSSAPDLPGPSSAPDLP- 228
G P +PG AP GP P + G P L
Sbjct: 1426 GDCGVPGVPGRDGAPGKIGEPGPMGPPGAEPLTLRGEKGDQGPMGVPGIRGEKGLPGLDG 1485
Query: 229 -----------------GPSSAPDLPGPSSAPDLPG 247
G P LPG AP LPG
Sbjct: 1486 LPGPSGPPGPPGLKGADGFPGLPGLPGEKGAPGLPG 1521
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 119/366 (32%), Gaps = 105/366 (28%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPG------------------------PSSAPDLPGPSS 52
P+ + RP P PG PG P P PG +
Sbjct: 637 PTHMVLRPGPPGYPGQKGEAGFPGLPGQIGLPGKPGPPGLPGLPGIPGPKGEPGFPGLTG 696
Query: 53 APDLPGPSSAPDLPGPSSA--------------------PDLPGPSS------------- 79
PG P LPG A P LPG
Sbjct: 697 K---PGKDGLPGLPGLKGAPGYGLPGLPGLPGQKGEAGIPGLPGAQGPVGPMGPPVAESQ 753
Query: 80 -APDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---S 132
P PG P LPGP + P PG P LPG LPGP + +PGP
Sbjct: 754 LKPGPPGKDGLPGLPGPKGDAGYPGAPGKEGVPGLPG------LPGPKGSEGMPGPPGID 807
Query: 133 SAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP------------ 174
P LPGP P L GP PG +P LPG P L
Sbjct: 808 GQPGLPGPKGNAGKPGLPGLQGPKGERGYPG---SPGLPGAKGEPGLSMTGPPGPPGFPG 864
Query: 175 -----GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
G AP LPGP LPG S L G + P PG + P G + P LPG
Sbjct: 865 LKGNDGLPGAPGLPGPEGPRGLPGVSG---LKGEAGLPGAPGIAGLPGQKGDAGFPGLPG 921
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSS 286
PG + AP PG LPG L G + AP LPG + P PG
Sbjct: 922 AEGPVGPPGIAGAPGFPGQKGEDGLPGLPGVAGLKGEAGLPGAPGLPGAAGQPGFPGLKG 981
Query: 287 APDLPG 292
LPG
Sbjct: 982 QAGLPG 987
>gi|170579429|ref|XP_001894827.1| collagen alpha 2(IV) chain precursor [Brugia malayi]
gi|158598437|gb|EDP36327.1| collagen alpha 2(IV) chain precursor, putative [Brugia malayi]
Length = 1761
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 113/306 (36%), Gaps = 47/306 (15%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P LPG P LPG P PGP AP PG P L + P LPG AP L
Sbjct: 1062 PGLPGEKGIPGLPGKQGRPGAPGPKGLDGAPGFPGLKGEPGL---AGLPGLPGQIGAPGL 1118
Query: 84 PGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDL 137
PG PG + AP LPG P + G +P +PG L PG P
Sbjct: 1119 PGQKGDAGFPGQAGLPGAPGLPGKMGVPGIRGDKGSPGIPGAYGERGLDGLPGQKGEPGY 1178
Query: 138 PGPS------------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
PG AP PG P PG P LPG + GP PG
Sbjct: 1179 PGLQGPIGPPGPKGNVGAPGYPGVKGLPGFPGKDGLPGLPGIKGDAGIQGP------PGK 1232
Query: 186 SSAPDLPGPSSAPDLPG--------------PSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
P LPG LPG +S L G AP LPG P LPG
Sbjct: 1233 DGFPGLPGQKGEAGLPGLPGSPGKFFFFFLASASIAGLKGSPGAPGLPGKDGLPGLPGMK 1292
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
P +PG P +PG P LPG A PG P L G P PG + P LP
Sbjct: 1293 GEPGIPG---YPGIPGAKGEPGLPGIPGAKGEPGLPGLPGLRGKDGLPGSPGVAGLPGLP 1349
Query: 292 GPSSTV 297
G V
Sbjct: 1350 GAKGDV 1355
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 109/296 (36%), Gaps = 40/296 (13%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P LPG AP LPG PG + AP LPG P + G +P +PG L
Sbjct: 1107 PGLPGQIGAPGLPGQKGDAGFPGQAGLPGAPGLPGKMGVPGIRGDKGSPGIPGAYGERGL 1166
Query: 84 PG------------------------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 119
G AP PG P PG P LPG +
Sbjct: 1167 DGLPGQKGEPGYPGLQGPIGPPGPKGNVGAPGYPGVKGLPGFPGKDGLPGLPGIKGDAGI 1226
Query: 120 ---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
PG P LPG LPG P PG L S A L G AP LPG
Sbjct: 1227 QGPPGKDGFPGLPGQKGEAGLPG---LPGSPGKFFFFFLASASIA-GLKGSPGAPGLPGK 1282
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
P LPG P +PG P +PG P LPG A PG P L G P
Sbjct: 1283 DGLPGLPGMKGEPGIPG---YPGIPGAKGEPGLPGIPGAKGEPGLPGLPGLRGKDGLPGS 1339
Query: 237 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
PG + P LPG L G AP LPG P L G P PGP P +PG
Sbjct: 1340 PGVAGLPGLPGAKGDVGLSGAPGAPGLPG---LPGLKGEPGLPGFPGPKGEPGIPG 1392
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 94/246 (38%), Gaps = 22/246 (8%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
AP PG P PG P LPG + GP PG P LPG LP
Sbjct: 1195 GAPGYPGVKGLPGFPGKDGLPGLPGIKGDAGIQGP------PGKDGFPGLPGQKGEAGLP 1248
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
G P PG L S A L G AP LPG P LPG P +PG P
Sbjct: 1249 G---LPGSPGKFFFFFLASASIA-GLKGSPGAPGLPGKDGLPGLPGMKGEPGIPG---YP 1301
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 222
+PG P LPG A PG P L G P PG + P LPG L G
Sbjct: 1302 GIPGAKGEPGLPGIPGAKGEPGLPGLPGLRGKDGLPGSPGVAGLPGLPGAKGDVGLSGAP 1361
Query: 223 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
AP LPG P L G P PGP P +PG P PG + G P P
Sbjct: 1362 GAPGLPG---LPGLKGEPGLPGFPGPKGEPGIPG---KPGFPGSQG---VKGDCGTPGAP 1412
Query: 283 GPSSAP 288
G AP
Sbjct: 1413 GRDGAP 1418
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 84/214 (39%), Gaps = 25/214 (11%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG P LPG LPG P PG L S A L G AP LPG
Sbjct: 1230 PGKDGFPGLPGQKGEAGLPG---LPGSPGKFFFFFLASASIA-GLKGSPGAPGLPGKDGL 1285
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
P LPG P +PG P +PG P LPG +PG P LPG P L G
Sbjct: 1286 PGLPGMKGEPGIPG---YPGIPGAKGEPGLPG------IPGAKGEPGLPG---LPGLRGK 1333
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
P PG + P LPG L G AP LPG P L G P PGP P +
Sbjct: 1334 DGLPGSPGVAGLPGLPGAKGDVGLSGAPGAPGLPG---LPGLKGEPGLPGFPGPKGEPGI 1390
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
PG P PG + G P PG AP
Sbjct: 1391 PG---KPGFPGSQG---VKGDCGTPGAPGRDGAP 1418
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 106/301 (35%), Gaps = 41/301 (13%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDL 83
P G + P LPG PG + P PG LPG L G + AP L
Sbjct: 865 PGQKGDAGFPGLPGAEGPAGPPGVAGLPGFPGQKGEDGLPGLPGVAGLKGDAGLPGAPGL 924
Query: 84 PGPSSAP---------------------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 122
PG P LPG AP + G LPG +PG
Sbjct: 925 PGADGKPGFPGLKGQGGPPGPPGSKGDAGLPGLPGAPGVKGERGIAGLPGLPGVKGVPG- 983
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
P PG P +PG G PGP++ G + P PG
Sbjct: 984 --YPGAPGKDGIPGIPGEKGERGFNGLPGEKGEPGPAARDGAKGEAGLPGAPGLRGPQGP 1041
Query: 183 PGPSSAPDLPGP-----SSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAP 234
PG P + G AP LPG P LPG P PGP AP PG P
Sbjct: 1042 PGLPGLPGIKGEDGKPGYGAPGLPGEKGIPGLPGKQGRPGAPGPKGLDGAPGFPGLKGEP 1101
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLP 291
L + P LPG AP LPG PG + AP LPG P + G +P +P
Sbjct: 1102 GL---AGLPGLPGQIGAPGLPGQKGDAGFPGQAGLPGAPGLPGKMGVPGIRGDKGSPGIP 1158
Query: 292 G 292
G
Sbjct: 1159 G 1159
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 103/297 (34%), Gaps = 34/297 (11%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-------- 68
P V P P G P LPG + G AP LPG P PG
Sbjct: 885 PPGVAGLPGFPGQKGEDGLPGLPGVAGLKGDAGLPGAPGLPGADGKPGFPGLKGQGGPPG 944
Query: 69 -------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 121
+ P LPG G + P LPG P PG PG P +PG
Sbjct: 945 PPGSKGDAGLPGLPGAPGVKGERGIAGLPGLPGVKGVPGYPG------APGKDGIPGIPG 998
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
G PGP++ G + P PG PG P + G P
Sbjct: 999 EKGERGFNGLPGEKGEPGPAARDGAKGEAGLPGAPGLRGPQGPPGLPGLPGIKGEDGKPG 1058
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPG 238
AP LPG P LPG P PGP AP PG P L + P LPG
Sbjct: 1059 Y----GAPGLPGEKGIPGLPGKQGRPGAPGPKGLDGAPGFPGLKGEPGL---AGLPGLPG 1111
Query: 239 PSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
AP LPG PG + AP LPG P + G +P +PG L G
Sbjct: 1112 QIGAPGLPGQKGDAGFPGQAGLPGAPGLPGKMGVPGIRGDKGSPGIPGAYGERGLDG 1168
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 64/161 (39%), Gaps = 12/161 (7%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
L G AP LPG P LPG P +PG P G P +PG P LPG
Sbjct: 1270 LKGSPGAPGLPGKDGLPGLPGMKGEPGIPGYPGIPGAKGEPGLPGIPGAKGEPGLPG--- 1326
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P L G P PG + P LPG L G AP LPG P L G P PG
Sbjct: 1327 LPGLRGKDGLPGSPGVAGLPGLPGAKGDVGLSGAPGAPGLPG---LPGLKGEPGLPGFPG 1383
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
P P +PG P PG + G P PG AP
Sbjct: 1384 PKGEPGIPG---KPGFPGSQG---VKGDCGTPGAPGRDGAP 1418
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 64/163 (39%), Gaps = 12/163 (7%)
Query: 18 STVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 77
+ + P P LPG P LPG P +PG P G P +PG P LPG
Sbjct: 1268 AGLKGSPGAPGLPGKDGLPGLPGMKGEPGIPGYPGIPGAKGEPGLPGIPGAKGEPGLPG- 1326
Query: 78 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 137
P L G P PG + P LPG L G AP LPG P L G P
Sbjct: 1327 --LPGLRGKDGLPGSPGVAGLPGLPGAKGDVGLSGAPGAPGLPG---LPGLKGEPGLPGF 1381
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
PGP P +PG P PG + G P PG AP
Sbjct: 1382 PGPKGEPGIPG---KPGFPGSQG---VKGDCGTPGAPGRDGAP 1418
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 97/296 (32%), Gaps = 62/296 (20%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 112
+PG LPGP LPG + P LPG PG + P PG LPG
Sbjct: 846 IPGFKGDAGLPGPPGVVGLPGQKGDAGFPGLPGAEGPAGPPGVAGLPGFPGQKGEDGLPG 905
Query: 113 PSSAPDLPGPS---SAPDLPGPSSAP---------------------DLPGPSSAPDLPG 148
L G + AP LPG P LPG AP + G
Sbjct: 906 LPGVAGLKGDAGLPGAPGLPGADGKPGFPGLKGQGGPPGPPGSKGDAGLPGLPGAPGVKG 965
Query: 149 PSSA---PDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
P LPG P PG P +PG G PGP++ G
Sbjct: 966 ERGIAGLPGLPGVKGVPGYPGAPGKDGIPGIPGEKGERGFNGLPGEKGEPGPAARDGAKG 1025
Query: 203 PSSAPDLPG-----------------------PSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
+ P PG AP LPG P LPG P PGP
Sbjct: 1026 EAGLPGAPGLRGPQGPPGLPGLPGIKGEDGKPGYGAPGLPGEKGIPGLPGKQGRPGAPGP 1085
Query: 240 S---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
AP PG P L + P LPG AP LPG PG + P PG
Sbjct: 1086 KGLDGAPGFPGLKGEPGL---AGLPGLPGQIGAPGLPGQKGDAGFPGQAGLPGAPG 1138
Score = 38.1 bits (87), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 98/361 (27%), Positives = 110/361 (30%), Gaps = 100/361 (27%)
Query: 26 EPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----------------- 65
+P LPGP + P LPG G P LPG P L
Sbjct: 766 QPGLPGPKGNAGKPGLPGLQGQKGETGYPGLPGLPGAKGEPGLSMTGPPGPPGFPGLKGN 825
Query: 66 ---------------------PGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDL 101
PG LPGP LPG + P LPG
Sbjct: 826 DGFPGPPGPPGPEGPRGLPGIPGFKGDAGLPGPPGVVGLPGQKGDAGFPGLPGAEGPAGP 885
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAP-------------- 144
PG + P PG LPG L G + AP LPG P
Sbjct: 886 PGVAGLPGFPGQKGEDGLPGLPGVAGLKGDAGLPGAPGLPGADGKPGFPGLKGQGGPPGP 945
Query: 145 -------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
LPG AP + G LPG +PG P PG P +PG
Sbjct: 946 PGSKGDAGLPGLPGAPGVKGERGIAGLPGLPGVKGVPG---YPGAPGKDGIPGIPGEKGE 1002
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----------------------PSSAP 234
G PGP++ G + P PG AP
Sbjct: 1003 RGFNGLPGEKGEPGPAARDGAKGEAGLPGAPGLRGPQGPPGLPGLPGIKGEDGKPGYGAP 1062
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
LPG P LPG P PGP AP PG P L + P LPG AP LP
Sbjct: 1063 GLPGEKGIPGLPGKQGRPGAPGPKGLDGAPGFPGLKGEPGL---AGLPGLPGQIGAPGLP 1119
Query: 292 G 292
G
Sbjct: 1120 G 1120
>gi|385777994|ref|YP_005687159.1| cellulosome anchoring protein cohesin subunit [Clostridium
thermocellum DSM 1313]
gi|316939674|gb|ADU73708.1| cellulosome anchoring protein cohesin region [Clostridium
thermocellum DSM 1313]
Length = 1615
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 136/323 (42%), Positives = 150/323 (46%), Gaps = 54/323 (16%)
Query: 28 DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGP 77
D P PS P D P PS P D P PS P+ P P+ P D P PS P D P P
Sbjct: 827 DEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTP 886
Query: 78 SSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPD 127
S P D P PS P+ P P+ P D P PS P D P PS P D P PS P+
Sbjct: 887 SDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPE 946
Query: 128 LPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPS 177
P P+ P D P PS P D P PS P D P PS P D P PS P+ P P+
Sbjct: 947 EPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPT 1006
Query: 178 SAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---D 226
P D P PS P D P PS P D P PS P+ P P+ P D P PS P D
Sbjct: 1007 DTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSD 1066
Query: 227 LPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPS 276
P PS P D P PS P D P PS P+ P P+ P D P PS P D P PS
Sbjct: 1067 EPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPS 1126
Query: 277 SAP---DLPGPSSAPDLPGPSST 296
P D P PS P+ P P+ T
Sbjct: 1127 DEPTPSDEPTPSETPEEPIPTDT 1149
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 137/329 (41%), Positives = 150/329 (45%), Gaps = 60/329 (18%)
Query: 28 DLPGPSSAP---DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGP 77
D P PS P D P PS P D P PS P D P PS P+ P P+ P D P P
Sbjct: 956 DEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTP 1015
Query: 78 SSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP- 126
S P D P PS P D P PS P+ P P+ P D P PS P D P PS P
Sbjct: 1016 SDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPT 1075
Query: 127 --DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLP 174
D P PS P D P PS P+ P P+ P D P PS P D P PS P D P
Sbjct: 1076 PSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEP 1135
Query: 175 GPSSAPDLPGPSSAP-------DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSS 223
PS P+ P P+ P D P PS P+ P P+ P D P PS P D P PS
Sbjct: 1136 TPSETPEEPIPTDTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSD 1195
Query: 224 AP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP--- 270
P D P PS P D P PS P+ P P+ P D P PS P D P PS P
Sbjct: 1196 EPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPS 1255
Query: 271 DLPGPSSAPDLPGPSSAP---DLPGPSST 296
D P PS P+ P PS P D P PS T
Sbjct: 1256 DEPTPSETPEEPTPSDEPTPSDEPTPSET 1284
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 135/320 (42%), Positives = 149/320 (46%), Gaps = 54/320 (16%)
Query: 28 DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGP 77
D P PS P D P PS P+ P P+ P D P PS P D P PS P D P P
Sbjct: 790 DEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTP 849
Query: 78 SSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPG 130
S D P PS P+ P P+ P D P PS P D P PS P D P PS P+ P
Sbjct: 850 S---DEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPI 906
Query: 131 PSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP-- 180
P+ P D P PS P D P PS P D P PS P+ P P+ P D P PS P
Sbjct: 907 PTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTP 966
Query: 181 -DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPG 229
D P PS P D P PS P D P PS P+ P P+ P D P PS P D P
Sbjct: 967 SDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPT 1026
Query: 230 PSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP 279
PS P D P PS P+ P P+ P D P PS P D P PS P D P PS P
Sbjct: 1027 PSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEP 1086
Query: 280 ---DLPGPSSAPDLPGPSST 296
D P PS P+ P P+ T
Sbjct: 1087 TPSDEPTPSETPEEPIPTDT 1106
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 117/281 (41%), Positives = 130/281 (46%), Gaps = 47/281 (16%)
Query: 28 DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP---DLPGP 77
D P PS P+ P P+ P D P PS P D P PS P D P PS P D P P
Sbjct: 1035 DEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTP 1094
Query: 78 SSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP---- 126
S P+ P P+ P D P PS P D P PS P D P PS P+ P P+ P
Sbjct: 1095 SETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEP 1154
Query: 127 ---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP---DL 173
D P PS P+ P P+ P D P PS P D P PS P D P PS P D
Sbjct: 1155 TPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDE 1214
Query: 174 PGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP- 225
P PS P+ P P+ P D P PS P D P PS P D P PS P+ P PS P
Sbjct: 1215 PTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPTPSDEPT 1274
Query: 226 --DLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAP 261
D P PS P+ P PS P D P PS P+ P PS P
Sbjct: 1275 PSDEPTPSETPEEPTPSDEPTPSDEPTPSETPEEPTPSDEP 1315
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 140/335 (41%), Positives = 153/335 (45%), Gaps = 55/335 (16%)
Query: 17 PSTVTERPLEPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPS 69
PS E P+ D P P D P PS P D P PS P D P PS P+ P P+
Sbjct: 806 PSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPT 865
Query: 70 SAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---D 118
P D P PS P D P PS P D P PS P+ P P+ P D P PS P D
Sbjct: 866 DTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSD 925
Query: 119 LPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPS 168
P PS P D P PS P+ P P+ P D P PS P D P PS P D P PS
Sbjct: 926 EPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPS 985
Query: 169 SAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDL 218
P D P PS P+ P P+ P D P PS P D P PS P D P PS P+
Sbjct: 986 DEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEE 1045
Query: 219 PGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSS 268
P P+ P D P PS P D P PS P D P PS P D P PS P+ P P+
Sbjct: 1046 PIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTD 1105
Query: 269 AP-DLPGPSSAP---DLPGPSSAP---DLPGPSST 296
P D P PS P D P PS P D P PS T
Sbjct: 1106 TPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSET 1140
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 71/150 (47%), Gaps = 23/150 (15%)
Query: 27 PDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPG 76
P+ P P+ P D P PS P D P PS P D P PS P D P PS P+ P
Sbjct: 1166 PEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPI 1225
Query: 77 PSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP---DLPGPSSAP 126
P+ P D P PS P D P PS P D P PS P+ P PS P D P PS P
Sbjct: 1226 PTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPTPSDEPTPSDEPTPSETP 1285
Query: 127 DLPGPSSAP---DLPGPSSAPDLPGPSSAP 153
+ P PS P D P PS P+ P PS P
Sbjct: 1286 EEPTPSDEPTPSDEPTPSETPEEPTPSDEP 1315
>gi|308473001|ref|XP_003098727.1| hypothetical protein CRE_04234 [Caenorhabditis remanei]
gi|308268327|gb|EFP12280.1| hypothetical protein CRE_04234 [Caenorhabditis remanei]
Length = 431
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 143/321 (44%), Gaps = 12/321 (3%)
Query: 7 KHVFTEADYLPSTVTERPLEP------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 60
HV + D+ + R E P S P SSA P SSA P S
Sbjct: 4 SHVMKQWDFGKDGIGHRFFEEAYVLNFSTPTDSRVAGTPDDSSAVGTPADSSAVGTPADS 63
Query: 61 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
SA P SS P L P + +P P+ P SSA +P SSA P SSA P
Sbjct: 64 SAAGTPDDSS-PIL-APQALQMIPAPAG---TPADSSAVGIPDDSSAAGTPADSSAAGTP 118
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
SSA P SSA P SSA +P SSA P SSA +P SSA +P SSA
Sbjct: 119 DDSSAAGTPDDSSAAGTPDDSSAAGIPDDSSAAGTPDDSSAAGIPDDSSAAGIPDDSSAA 178
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
P SSA +P SSA P SSA +P SSA P SSA P SSA P S
Sbjct: 179 GTPDDSSAAGIPDDSSAAGTPDDSSAAGIPADSSAAGTPADSSAAGTPDDSSAAGTPDDS 238
Query: 241 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGS 300
SA +P SSA +P SSA P SSA +P SSA +P SSA P SS S
Sbjct: 239 SAAGIPDDSSAAGIPDDSSAAGTPDDSSAAGIPDDSSAAGIPDDSSAAGTPDDSSAPQAS 298
Query: 301 YLGEAGHQKSPKGLEPKPAQI 321
+ A H P L P Q+
Sbjct: 299 QMILAPHASQPI-LAPHALQM 318
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 116/314 (36%), Positives = 134/314 (42%), Gaps = 50/314 (15%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+P SSA P SSA P SSA P SSA P SSA +P SSA P SS
Sbjct: 99 IPDDSSAAGTPADSSAAGTPDDSSAAGTPDDSSAAGTPDDSSAAGIPDDSSAAGTPDDSS 158
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
A +P SSA +P SSA P SSA +P SSA P SSA +P SSA P
Sbjct: 159 AAGIPDDSSAAGIPDDSSAAGTPDDSSAAGIPDDSSAAGTPDDSSAAGIPADSSAAGTPA 218
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
SSA P SSA P SSA +P SSA +P SSA P SSA +P SSA
Sbjct: 219 DSSAAGTPDDSSAAGTPDDSSAAGIPDDSSAAGIPDDSSAAGTPDDSSAAGIPDDSSAAG 278
Query: 209 LPGPSSAPDLPGPSSAPD------------------------------------------ 226
+P SSA P SSAP
Sbjct: 279 IPDDSSAAGTPDDSSAPQASQMILAPHASQPILAPHALQMILAPHASQMILAPHALQMIL 338
Query: 227 ----LPGPSSAPD-LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
P SSAP + P ++ +P P+ P SSA +P SSA +P SSA +
Sbjct: 339 APAGTPDDSSAPQPILAPQASQMIPAPAG---TPADSSAVGIPDDSSAAGIPDDSSAAGI 395
Query: 282 PGPSSAPDLPGPSS 295
P SSA P SS
Sbjct: 396 PDDSSAAGTPDDSS 409
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 130/306 (42%), Gaps = 50/306 (16%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
P SSA P SSA P SSA P SSA +P SSA P SSA +P SS
Sbjct: 108 TPADSSAAGTPDDSSAAGTPDDSSAAGTPDDSSAAGIPDDSSAAGTPDDSSAAGIPDDSS 167
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
A +P SSA P SSA +P SSA P SSA +P SSA P SSA P
Sbjct: 168 AAGIPDDSSAAGTPDDSSAAGIPDDSSAAGTPDDSSAAGIPADSSAAGTPADSSAAGTPD 227
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
SSA P SSA +P SSA +P SSA P SSA +P SSA +P SSA
Sbjct: 228 DSSAAGTPDDSSAAGIPDDSSAAGIPDDSSAAGTPDDSSAAGIPDDSSAAGIPDDSSAAG 287
Query: 209 LPGPSSAPD----------------------------------------------LPGPS 222
P SSAP P S
Sbjct: 288 TPDDSSAPQASQMILAPHASQPILAPHALQMILAPHASQMILAPHALQMILAPAGTPDDS 347
Query: 223 SAPD-LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
SAP + P ++ +P P+ P SSA +P SSA +P SSA +P SSA
Sbjct: 348 SAPQPILAPQASQMIPAPAG---TPADSSAVGIPDDSSAAGIPDDSSAAGIPDDSSAAGT 404
Query: 282 PGPSSA 287
P SSA
Sbjct: 405 PDDSSA 410
>gi|325087468|gb|EGC40778.1| proteoglycan [Ajellomyces capsulatus H88]
Length = 771
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 125/278 (44%), Gaps = 5/278 (1%)
Query: 21 TERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
T+ P+EP P+ P P P+ P P P+ P P P+ P P P+ P P P+
Sbjct: 78 TDYPVEP---TPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDY 134
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P
Sbjct: 135 PVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTP 194
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P
Sbjct: 195 TDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVE 254
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDLPGPS 258
P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+
Sbjct: 255 PTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVSPEPTPTDYPVEPTPTDYPVEPTPT 314
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
P P P+ P P P+ P P P+ P P P+ T
Sbjct: 315 DYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVSPEPTPT 352
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 119/267 (44%), Gaps = 2/267 (0%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+
Sbjct: 57 PTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDY 116
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P
Sbjct: 117 PVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTP 176
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P
Sbjct: 177 TDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVE 236
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGPS 267
P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+
Sbjct: 237 PTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVSPEPTPT 296
Query: 268 SAPDLPGPSSAPDLPGPSSAPDLPGPS 294
P P P+ P P P+ P P P+
Sbjct: 297 DYPVEPTPTDYPVEPTPTDYPVEPTPT 323
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 108/240 (45%)
Query: 57 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 116
P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+
Sbjct: 57 PTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDY 116
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P
Sbjct: 117 PVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTP 176
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P
Sbjct: 177 TDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVE 236
Query: 237 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ T
Sbjct: 237 PTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVSPEPTPT 296
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 121/277 (43%), Gaps = 5/277 (1%)
Query: 23 RPLEPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
P D P P+ P P P+ P P P+ P P P+ P P P+ P P P+
Sbjct: 65 EPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTD 124
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P
Sbjct: 125 YPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPT 184
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P
Sbjct: 185 PTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPV 244
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSSAPDLPGP 257
P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P
Sbjct: 245 EPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVSPEPTPTDYPVEPTP 304
Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
+ P P P+ P P P+ P P P+ P P P+
Sbjct: 305 TDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPT 341
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 105/247 (42%), Gaps = 5/247 (2%)
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+
Sbjct: 57 PTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDY 116
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P
Sbjct: 117 PVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTP 176
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P
Sbjct: 177 TDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVE 236
Query: 255 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGL 314
P P+ P P P+ P P P+ P P P+ P P P+ Y E P
Sbjct: 237 PTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTD-----YPVEPTPTDYPVSP 291
Query: 315 EPKPAQI 321
EP P
Sbjct: 292 EPTPTDY 298
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 106/238 (44%), Gaps = 5/238 (2%)
Query: 62 APDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 116
+PD P P+ P P P+ P P P+ P P P+ P P P+ P P P+
Sbjct: 48 SPDPNYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDY 107
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P
Sbjct: 108 PVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTP 167
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P
Sbjct: 168 TDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVE 227
Query: 237 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+
Sbjct: 228 PTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPT 285
>gi|125975557|ref|YP_001039467.1| cellulosome anchoring protein cohesin subunit [Clostridium
thermocellum ATCC 27405]
gi|145559529|sp|Q06852.2|SLAP1_CLOTH RecName: Full=Cell surface glycoprotein 1; AltName: Full=Outer layer
protein B; AltName: Full=S-layer protein 1; Flags:
Precursor
gi|125715782|gb|ABN54274.1| cellulosome anchoring protein cohesin region [Clostridium
thermocellum ATCC 27405]
Length = 2313
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 136/323 (42%), Positives = 150/323 (46%), Gaps = 54/323 (16%)
Query: 28 DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGP 77
D P PS P D P PS P D P PS P+ P P+ P D P PS P D P P
Sbjct: 1386 DEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTP 1445
Query: 78 SSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPD 127
S P D P PS P+ P P+ P D P PS P D P PS P D P PS P+
Sbjct: 1446 SDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPE 1505
Query: 128 LPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSA 179
P P+ P D P PS P D P PS P D P PS P+ P P+ P D P PS
Sbjct: 1506 EPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDE 1565
Query: 180 P---DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---D 226
P D P PS P D P PS P D P PS P+ P P+ P D P PS P D
Sbjct: 1566 PTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSD 1625
Query: 227 LPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPS 276
P PS P D P PS P D P PS P+ P P+ P D P PS P D P PS
Sbjct: 1626 EPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPS 1685
Query: 277 SAP---DLPGPSSAPDLPGPSST 296
P D P PS P+ P P+ T
Sbjct: 1686 DEPTPSDEPTPSETPEEPIPTDT 1708
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 149/319 (46%), Gaps = 52/319 (16%)
Query: 28 DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGP 77
D P PS P D P PS P+ P P+ P D P PS P D P PS P D P P
Sbjct: 1398 DEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTP 1457
Query: 78 SSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLP 129
S P+ P P+ P D P PS P D P PS P D P PS P+ P P+ P D P
Sbjct: 1458 SETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEP 1517
Query: 130 GPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSA 179
PS P D P PS P D P PS P+ P P+ P D P PS P D P PS
Sbjct: 1518 TPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDE 1577
Query: 180 P---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---D 226
P D P PS P D P PS P+ P P+ P D P PS P D P PS P D
Sbjct: 1578 PTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSD 1637
Query: 227 LPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPS 276
P PS P D P PS P+ P P+ P D P PS P D P PS P D P PS
Sbjct: 1638 EPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPS 1697
Query: 277 SAPDLPGPSSAP-DLPGPS 294
P+ P P+ P D P PS
Sbjct: 1698 ETPEEPIPTDTPSDEPTPS 1716
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 137/325 (42%), Positives = 151/325 (46%), Gaps = 55/325 (16%)
Query: 27 PDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPG 76
P+ P P+ P D P PS P D P PS P D P PS P D P PS P+ P
Sbjct: 1547 PEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPI 1606
Query: 77 PSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP 126
P+ P D P PS P D P PS P D P PS P D P PS P+ P P+ P
Sbjct: 1607 PTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTP 1666
Query: 127 -DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPG 175
D P PS P D P PS P D P PS P+ P P+ P D P PS P D P
Sbjct: 1667 SDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPT 1726
Query: 176 PSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP 225
PS P D P PS P+ P P+ P D P PS P D P PS P D P PS P
Sbjct: 1727 PSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETP 1786
Query: 226 DLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSS 277
+ P P+ P D P PS P D P PS P D P PS P+ P P+ P D P PS
Sbjct: 1787 EEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSD 1846
Query: 278 AP---DLPGPSSAP---DLPGPSST 296
P D P PS P D P PS T
Sbjct: 1847 EPTPSDEPTPSDEPTPSDEPTPSET 1871
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 123/291 (42%), Positives = 135/291 (46%), Gaps = 48/291 (16%)
Query: 28 DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGP 77
D P PS P D P PS P+ P P+ P D P PS P D P PS P D P P
Sbjct: 1723 DEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTP 1782
Query: 78 SSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLP 129
S P+ P P+ P D P PS P D P PS P D P PS P+ P P+ P D P
Sbjct: 1783 SETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEP 1842
Query: 130 GPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSA 179
PS P D P PS P D P PS P+ P P+ P D P PS P D P PS
Sbjct: 1843 TPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDE 1902
Query: 180 P---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP---D 226
P D P PS P+ P P+ P D P PS P D P PS P D P PS P D
Sbjct: 1903 PTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSD 1962
Query: 227 LPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP 270
P PS P+ P P+ P D P PS P D P PS P D P PS P
Sbjct: 1963 EPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEP 2013
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 114/271 (42%), Positives = 126/271 (46%), Gaps = 45/271 (16%)
Query: 27 PDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPS 78
P+ P P+ P D P PS P D P PS P D P PS P+ P P+ P D P PS
Sbjct: 1743 PEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPS 1802
Query: 79 SAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP-- 126
P D P PS P D P PS P+ P P+ P D P PS P D P PS P
Sbjct: 1803 DEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTP 1862
Query: 127 -DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSS 178
D P PS P+ P P+ P D P PS P D P PS P D P PS P+ P P+
Sbjct: 1863 SDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTD 1922
Query: 179 AP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DL 227
P D P PS P D P PS P D P PS P D P PS P+ P P+ P D
Sbjct: 1923 TPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDE 1982
Query: 228 PGPSSAP---DLPGPSSAP---DLPGPSSAP 252
P PS P D P PS P D P PS P
Sbjct: 1983 PTPSDEPTPSDEPTPSDEPTPSDEPTPSDEP 2013
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 73/156 (46%), Gaps = 27/156 (17%)
Query: 28 DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSA 80
D P PS P+ P P+ P D P PS P D P PS P D P PS P+ P P+
Sbjct: 1864 DEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDT 1923
Query: 81 P-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLP 129
P D P PS P D P PS P D P PS P D P PS P+ P P+ P D P
Sbjct: 1924 PSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEP 1983
Query: 130 GPSSAPDLPGPSSAP---DLPGPSSAP---DLPGPS 159
PS D P PS P D P PS P D P PS
Sbjct: 1984 TPS---DEPTPSDEPTPSDEPTPSDEPTPSDEPTPS 2016
>gi|393909722|gb|EFO24567.2| procollagen [Loa loa]
Length = 1794
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 116/299 (38%), Gaps = 44/299 (14%)
Query: 20 VTERPLEPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
V E L+P PG P LPGP + P PG P LPG LPGP + +PG
Sbjct: 732 VAESQLKPGPPGKDGLPGLPGPKGDAGYPGAPGKEGVPGLPG------LPGPKGSEGMPG 785
Query: 77 P---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---- 129
P P LPGP PG P L GP PG +P LPG P L
Sbjct: 786 PPGIDGQPGLPGPKGNAGKPG---LPGLQGPKGERGYPG---SPGLPGAKGEPGLSMTGP 839
Query: 130 -------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
G AP LPGP LPG S L G + P PG + P G
Sbjct: 840 PGPPGFPGLKGNDGLPGAPGLPGPEGPRGLPGVSG---LKGEAGLPGAPGIAGLPGQKGD 896
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSA 233
+ P LPG PG + AP PG LPG L G + AP LPG +
Sbjct: 897 AGFPGLPGAEGPVGPPGIAGAPGFPGQKGEDGLPGLPGVAGLKGEAGLPGAPGLPGAAGQ 956
Query: 234 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P PG LPG P G + P LPG A G + P LPG A PG
Sbjct: 957 PGFPGLKGQAGLPG---IPGAKGDAGLPGLPGAPGAKGERGLAGLPGLPGMKGASGYPG 1012
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 105/282 (37%), Gaps = 19/282 (6%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPG 76
+ P P G P LPG + G AP LPG + P P G + P +PG
Sbjct: 914 IAGAPGFPGQKGEDGLPGLPGVAGLKGEAGLPGAPGLPGAAGQPGFPGLKGQAGLPGIPG 973
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
LPG AP G LPG P + G S P PG P +PG
Sbjct: 974 AKGDAGLPGLPGAPGAKGERGLAGLPG---LPGMKGASGYPGAPGKDGLPGIPGAKGERG 1030
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
G PGP++ G + P PG PG P + G + P
Sbjct: 1031 FNGLPGEKGEPGPAARDGAKGDAGLPGAPGLRGPQGPPGLPGLPGIKGEAGKPGY----G 1086
Query: 197 APDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
AP LPG P LPG AP G AP PG LPG AP +PG P
Sbjct: 1087 APGLPGEKGIPGLPGKQGRQGAPGQKGLDGAPGFPGLKGDAGLPG---APGIPGQIGLPG 1143
Query: 254 LPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG PG S AP LPG P + G P +PG
Sbjct: 1144 LPGQKGEAGFPGQSGLPGAPGLPGKMGVPGIRGDKGVPGIPG 1185
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 111/320 (34%), Gaps = 60/320 (18%)
Query: 27 PDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P LPG P LPG AP G AP PG LPG AP +PG P L
Sbjct: 1088 PGLPGEKGIPGLPGKQGRQGAPGQKGLDGAPGFPGLKGDAGLPG---APGIPGQIGLPGL 1144
Query: 84 PGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDL 137
PG PG S AP LPG P + G P +PG LPG P L
Sbjct: 1145 PGQKGEAGFPGQSGLPGAPGLPGKMGVPGIRGDKGVPGIPGAPGDRGLDGLPGQKGEPGL 1204
Query: 138 PGPS------------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDL 182
PG AP PG P PG P LPG + PG P +
Sbjct: 1205 PGLQGPMGPPGPKGNIGAPGYPGIKGLPGFPGKDGLPGLPGIKGEVGMQGAPGKDGFPGI 1264
Query: 183 PGPSS---------------------------APDLPGP---SSAPDLPGPSSAPDLPGP 212
PG + GP + A LPG P LPG
Sbjct: 1265 PGQKGEAGLPGLPGLPGKFFPLLIKNAIHGNHCASIAGPKGNAGASGLPGKDGLPGLPGM 1324
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
P L G A + G + P +PG P LPG P L G P PG + P +
Sbjct: 1325 KGEPGLSGYPGASGVKGEAGLPGIPGAKGEPGLPG---LPGLRGKDGLPGAPGIAGLPGI 1381
Query: 273 PGPSSAPDLPGPSSAPDLPG 292
PG LPG P PG
Sbjct: 1382 PGAKGDAGLPGAPGVPGQPG 1401
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 109/313 (34%), Gaps = 60/313 (19%)
Query: 34 SAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
AP LPG P LPG AP G AP PG LPG AP +PG P
Sbjct: 1086 GAPGLPGEKGIPGLPGKQGRQGAPGQKGLDGAPGFPGLKGDAGLPG---APGIPGQIGLP 1142
Query: 91 DLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAP 144
LPG PG S AP LPG P + G P +PG LPG P
Sbjct: 1143 GLPGQKGEAGFPGQSGLPGAPGLPGKMGVPGIRGDKGVPGIPGAPGDRGLDGLPGQKGEP 1202
Query: 145 DLPGPS------------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAP 189
LPG AP PG P PG P LPG + PG P
Sbjct: 1203 GLPGLQGPMGPPGPKGNIGAPGYPGIKGLPGFPGKDGLPGLPGIKGEVGMQGAPGKDGFP 1262
Query: 190 DLPGPSS---------------------------APDLPGP---SSAPDLPGPSSAPDLP 219
+PG + GP + A LPG P LP
Sbjct: 1263 GIPGQKGEAGLPGLPGLPGKFFPLLIKNAIHGNHCASIAGPKGNAGASGLPGKDGLPGLP 1322
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 279
G P L G A + G + P +PG P LPG P L G P PG + P
Sbjct: 1323 GMKGEPGLSGYPGASGVKGEAGLPGIPGAKGEPGLPG---LPGLRGKDGLPGAPGIAGLP 1379
Query: 280 DLPGPSSAPDLPG 292
+PG LPG
Sbjct: 1380 GIPGAKGDAGLPG 1392
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 103/293 (35%), Gaps = 47/293 (16%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P LPG + G AP LPG + P PG L G + P +PG LPG
Sbjct: 930 PGLPGVAGLKGEAGLPGAPGLPGAAGQPGFPG------LKGQAGLPGIPGAKGDAGLPGL 983
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
AP G LPG P + G S P PG P +PG G
Sbjct: 984 PGAPGAKGERGLAGLPG---LPGMKGASGYPGAPGKDGLPGIPGAKGERGFNGLPGEKGE 1040
Query: 147 PGPSSAPDLPGPSSAPDLPG-----------------------PSSAPDLPGPSSAPDLP 183
PGP++ G + P PG AP LPG P LP
Sbjct: 1041 PGPAARDGAKGDAGLPGAPGLRGPQGPPGLPGLPGIKGEAGKPGYGAPGLPGEKGIPGLP 1100
Query: 184 GP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
G AP G AP PG LPG AP +PG P LPG PG S
Sbjct: 1101 GKQGRQGAPGQKGLDGAPGFPGLKGDAGLPG---APGIPGQIGLPGLPGQKGEAGFPGQS 1157
Query: 241 ---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
AP LPG P + G P +PG PG LPG P L
Sbjct: 1158 GLPGAPGLPGKMGVPGIRGDKGVPGIPG------APGDRGLDGLPGQKGEPGL 1204
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 111/326 (34%), Gaps = 69/326 (21%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDL 83
P PG LPG AP +PG P LPG PG S AP LPG P +
Sbjct: 1118 PGFPGLKGDAGLPG---APGIPGQIGLPGLPGQKGEAGFPGQSGLPGAPGLPGKMGVPGI 1174
Query: 84 PGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS------------SAPDLPGPSSAPDL 128
G P +PG LPG P LPG AP PG P
Sbjct: 1175 RGDKGVPGIPGAPGDRGLDGLPGQKGEPGLPGLQGPMGPPGPKGNIGAPGYPGIKGLPGF 1234
Query: 129 PGPSSAPDLPGPSSAPDL---PGPSSAPDLPGP--------------------------- 158
PG P LPG + PG P +PG
Sbjct: 1235 PGKDGLPGLPGIKGEVGMQGAPGKDGFPGIPGQKGEAGLPGLPGLPGKFFPLLIKNAIHG 1294
Query: 159 ------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
+ A LPG P LPG P L G A + G + P +PG
Sbjct: 1295 NHCASIAGPKGNAGASGLPGKDGLPGLPGMKGEPGLSGYPGASGVKGEAGLPGIPGAKGE 1354
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
P LPG P L G P PG + P +PG LPG AP +PG L G
Sbjct: 1355 PGLPG---LPGLRGKDGLPGAPGIAGLPGIPGAKGDAGLPG---APGVPGQPGLLGLKGE 1408
Query: 267 SSAPDLPGPSSAPDLPGPSSAPDLPG 292
P PGP +PG P LPG
Sbjct: 1409 PGLPGFPGPKGEAGIPGKPGLPGLPG 1434
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 111/330 (33%), Gaps = 69/330 (20%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--- 79
R P G AP PG LPG AP +PG P LPG PG S
Sbjct: 1105 RQGAPGQKGLDGAPGFPGLKGDAGLPG---APGIPGQIGLPGLPGQKGEAGFPGQSGLPG 1161
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS------------S 124
AP LPG P + G P +PG LPG P LPG
Sbjct: 1162 APGLPGKMGVPGIRGDKGVPGIPGAPGDRGLDGLPGQKGEPGLPGLQGPMGPPGPKGNIG 1221
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGP-------------- 167
AP PG P PG P LPG + PG P +PG
Sbjct: 1222 APGYPGIKGLPGFPGKDGLPGLPGIKGEVGMQGAPGKDGFPGIPGQKGEAGLPGLPGLPG 1281
Query: 168 -------------------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+ A LPG P LPG P L G A + G
Sbjct: 1282 KFFPLLIKNAIHGNHCASIAGPKGNAGASGLPGKDGLPGLPGMKGEPGLSGYPGASGVKG 1341
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
+ P +PG P LPG P L G P PG + P +PG LPG AP
Sbjct: 1342 EAGLPGIPGAKGEPGLPG---LPGLRGKDGLPGAPGIAGLPGIPGAKGDAGLPG---APG 1395
Query: 263 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG L G P PGP +PG
Sbjct: 1396 VPGQPGLLGLKGEPGLPGFPGPKGEAGIPG 1425
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 101/282 (35%), Gaps = 38/282 (13%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
AP LPGP LPG S L G + P PG + P G + P LPG P
Sbjct: 856 GAPGLPGPEGPRGLPGVSG---LKGEAGLPGAPGIAGLPGQKGDAGFPGLPGAEGPVGPP 912
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLP---GPSSAPDLP 156
G + AP PG LPG L G + AP LPG + P P G + P +P
Sbjct: 913 GIAGAPGFPGQKGEDGLPGLPGVAGLKGEAGLPGAPGLPGAAGQPGFPGLKGQAGLPGIP 972
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
G LPG AP G LPG P + G S P PG P +PG
Sbjct: 973 GAKGDAGLPGLPGAPGAKGERGLAGLPG---LPGMKGASGYPGAPGKDGLPGIPGAKGER 1029
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----------------------PSSAPD 253
G PGP++ G + P PG AP
Sbjct: 1030 GFNGLPGEKGEPGPAARDGAKGDAGLPGAPGLRGPQGPPGLPGLPGIKGEAGKPGYGAPG 1089
Query: 254 LPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P LPG AP G AP PG LPG
Sbjct: 1090 LPGEKGIPGLPGKQGRQGAPGQKGLDGAPGFPGLKGDAGLPG 1131
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 108/322 (33%), Gaps = 72/322 (22%)
Query: 27 PDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSA 80
P LPG PG S AP LPG P + G P +PG LPG
Sbjct: 1142 PGLPGQKGEAGFPGQSGLPGAPGLPGKMGVPGIRGDKGVPGIPGAPGDRGLDGLPGQKGE 1201
Query: 81 PDLPGPS------------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSA 125
P LPG AP PG P PG P LPG + PG
Sbjct: 1202 PGLPGLQGPMGPPGPKGNIGAPGYPGIKGLPGFPGKDGLPGLPGIKGEVGMQGAPGKDGF 1261
Query: 126 PDLPGP---------------------------------------SSAPDLPGPSSAPDL 146
P +PG + A LPG P L
Sbjct: 1262 PGIPGQKGEAGLPGLPGLPGKFFPLLIKNAIHGNHCASIAGPKGNAGASGLPGKDGLPGL 1321
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
PG P L G A + G + P +PG P LPG P L G P PG +
Sbjct: 1322 PGMKGEPGLSGYPGASGVKGEAGLPGIPGAKGEPGLPG---LPGLRGKDGLPGAPGIAGL 1378
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
P +PG LPG AP +PG L G P PGP +PG P LPG
Sbjct: 1379 PGIPGAKGDAGLPG---APGVPGQPGLLGLKGEPGLPGFPGPKGEAGIPGKPGLPGLPG- 1434
Query: 267 SSAPDLPGPSSAPDLPGPSSAP 288
L G P +PG AP
Sbjct: 1435 -----LKGDCGVPGVPGRDGAP 1451
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 86/240 (35%), Gaps = 35/240 (14%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
G + A LPG P LPG P L G A + G + P +PG P LPG P
Sbjct: 1305 GNAGASGLPGKDGLPGLPGMKGEPGLSGYPGASGVKGEAGLPGIPGAKGEPGLPG---LP 1361
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
L G P PG + P +PG LPG AP +PG L G P PGP
Sbjct: 1362 GLRGKDGLPGAPGIAGLPGIPGAKGDAGLPG---APGVPGQPGLLGLKGEPGLPGFPGPK 1418
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------------------- 191
+PG P LPG L G P +PG AP
Sbjct: 1419 GEAGIPGKPGLPGLPG------LKGDCGVPGVPGRDGAPGKIGEPGPMGPPGAEPLTLRG 1472
Query: 192 ----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
GP P + G P L G PGP G P LPG AP LPG
Sbjct: 1473 EKGDQGPMGVPGIRGEKGLPGLDGLPGPSGPPGPPGLKGADGFPGLPGLPGEKGAPGLPG 1532
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 86/240 (35%), Gaps = 35/240 (14%)
Query: 49 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 108
G + A LPG P LPG P L G A + G + P +PG P LPG P
Sbjct: 1305 GNAGASGLPGKDGLPGLPGMKGEPGLSGYPGASGVKGEAGLPGIPGAKGEPGLPG---LP 1361
Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 168
L G P PG + P +PG LPG AP +PG L G P PGP
Sbjct: 1362 GLRGKDGLPGAPGIAGLPGIPGAKGDAGLPG---APGVPGQPGLLGLKGEPGLPGFPGPK 1418
Query: 169 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------------------- 209
+PG P LPG L G P +PG AP
Sbjct: 1419 GEAGIPGKPGLPGLPG------LKGDCGVPGVPGRDGAPGKIGEPGPMGPPGAEPLTLRG 1472
Query: 210 ----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
GP P + G P L G PGP G P LPG AP LPG
Sbjct: 1473 EKGDQGPMGVPGIRGEKGLPGLDGLPGPSGPPGPPGLKGADGFPGLPGLPGEKGAPGLPG 1532
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 119/366 (32%), Gaps = 105/366 (28%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPG------------------------PSSAPDLPGPSS 52
P+ + RP P PG PG P P PG +
Sbjct: 620 PTHMVLRPGPPGYPGQKGEAGFPGLPGQIGLPGKPGPPGLPGLPGIPGPKGEPGFPGLTG 679
Query: 53 APDLPGPSSAPDLPGPSSA--------------------PDLPGPSS------------- 79
PG P LPG A P LPG
Sbjct: 680 K---PGKDGLPGLPGLKGAPGYGLPGLPGLPGQKGEAGIPGLPGAQGPVGPMGPPVAESQ 736
Query: 80 -APDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---S 132
P PG P LPGP + P PG P LPG LPGP + +PGP
Sbjct: 737 LKPGPPGKDGLPGLPGPKGDAGYPGAPGKEGVPGLPG------LPGPKGSEGMPGPPGID 790
Query: 133 SAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP------------ 174
P LPGP P L GP PG +P LPG P L
Sbjct: 791 GQPGLPGPKGNAGKPGLPGLQGPKGERGYPG---SPGLPGAKGEPGLSMTGPPGPPGFPG 847
Query: 175 -----GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
G AP LPGP LPG S L G + P PG + P G + P LPG
Sbjct: 848 LKGNDGLPGAPGLPGPEGPRGLPGVSG---LKGEAGLPGAPGIAGLPGQKGDAGFPGLPG 904
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSS 286
PG + AP PG LPG L G + AP LPG + P PG
Sbjct: 905 AEGPVGPPGIAGAPGFPGQKGEDGLPGLPGVAGLKGEAGLPGAPGLPGAAGQPGFPGLKG 964
Query: 287 APDLPG 292
LPG
Sbjct: 965 QAGLPG 970
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 77/227 (33%), Gaps = 50/227 (22%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPG P LPG P L G A + G + P +PG P LPG P L G
Sbjct: 1312 LPGKDGLPGLPGMKGEPGLSGYPGASGVKGEAGLPGIPGAKGEPGLPG---LPGLRGKDG 1368
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P PG + P +PG LPG AP +PG L G P PGP +PG
Sbjct: 1369 LPGAPGIAGLPGIPGAKGDAGLPG---APGVPGQPGLLGLKGEPGLPGFPGPKGEAGIPG 1425
Query: 149 PSSAPDLPG---PSSAPDLPGPSSAPDL-----------------------PGPSSAPDL 182
P LPG P +PG AP GP P +
Sbjct: 1426 KPGLPGLPGLKGDCGVPGVPGRDGAPGKIGEPGPMGPPGAEPLTLRGEKGDQGPMGVPGI 1485
Query: 183 PGPSSAPDLP------------------GPSSAPDLPGPSSAPDLPG 211
G P L G P LPG AP LPG
Sbjct: 1486 RGEKGLPGLDGLPGPSGPPGPPGLKGADGFPGLPGLPGEKGAPGLPG 1532
>gi|156355369|ref|XP_001623641.1| predicted protein [Nematostella vectensis]
gi|156210361|gb|EDO31541.1| predicted protein [Nematostella vectensis]
Length = 1056
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 119/275 (43%), Gaps = 5/275 (1%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
PSS P P+S P P+S P P+S P PSS P PSS P PSS P
Sbjct: 766 NPSSNPKPNNPASNPKPNNPASNPKPNNPASNPKPNNPSSNPKPNNPSSNPKPNNPSSNP 825
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
PSS P P+ P P+ P P+S P P+S P PSS P PS
Sbjct: 826 KPNNPSSNPKPNNPAFNPKPNNPAFNPKPNNPASNPKPNNPASNPKPNNPSSNPKPNNPS 885
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
S P P+S P PSS P P+S P PSS P P+S P PSS P
Sbjct: 886 SNPKPNNPASNPKPNNPSSNPKPNNPASNPKPNNPSSNPKPNNPASNPKPNNPSSNPKPN 945
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
PSS P PSS P PSS P P+S P PSS P PSS P PSS P
Sbjct: 946 NPSSNPKPNNPSSNPKPNNPSSNPKPNNPASNPKPNNPSSNPKPNNPSSNPKPNNPSSNP 1005
Query: 271 DLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEA 305
P+S P P+S P P G+YL
Sbjct: 1006 KSNNPASNPKSNNPASNPKPNNP-----GTYLKRK 1035
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 104/266 (39%), Positives = 117/266 (43%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
PSS P P+S P PSS P P+S P P+S P P+S P PSS P
Sbjct: 748 NPSSNPKPNNPASNPKPNNPSSNPKPNNPASNPKPNNPASNPKPNNPASNPKPNNPSSNP 807
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
PSS P PSS P PSS P P+ P P+ P P+S P P+
Sbjct: 808 KPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPAFNPKPNNPAFNPKPNNPASNPKPNNPA 867
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
S P PSS P PSS P P+S P PSS P P+S P PSS P
Sbjct: 868 SNPKPNNPSSNPKPNNPSSNPKPNNPASNPKPNNPSSNPKPNNPASNPKPNNPSSNPKPN 927
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
P+S P PSS P PSS P PSS P PSS P P+S P PSS P
Sbjct: 928 NPASNPKPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPASNPKPNNPSSNP 987
Query: 271 DLPGPSSAPDLPGPSSAPDLPGPSST 296
PSS P PSS P P+S
Sbjct: 988 KPNNPSSNPKPNNPSSNPKSNNPASN 1013
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 111/303 (36%), Positives = 130/303 (42%), Gaps = 14/303 (4%)
Query: 1 MIAPFDKHVFTEADYLPSTVTERPLEPDLP-------GPSSAPDLPGPSSAPDLPGPSSA 53
M F+ HV P ++ + L+P P PSS P P+S P PSS
Sbjct: 682 MRKTFNVHV-------PVRMSTKSLKPINPLSNPKPNNPSSNPKPNNPASNPKPNNPSSN 734
Query: 54 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 113
P P+S P PSS P P+S P PSS P P+S P P+S P P
Sbjct: 735 PKPNNPASNPKPNNPSSNPKPNNPASNPKPNNPSSNPKPNNPASNPKPNNPASNPKPNNP 794
Query: 114 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 173
+S P PSS P PSS P PSS P PSS P P+ P P+ P
Sbjct: 795 ASNPKPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPAFNPKPNNPAFNPKP 854
Query: 174 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 233
P+S P P+S P PSS P PSS P P+S P PSS P P+S
Sbjct: 855 NNPASNPKPNNPASNPKPNNPSSNPKPNNPSSNPKPNNPASNPKPNNPSSNPKPNNPASN 914
Query: 234 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
P PSS P P+S P PSS P PSS P PSS P PSS P P
Sbjct: 915 PKPNNPSSNPKPNNPASNPKPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNP 974
Query: 294 SST 296
+S
Sbjct: 975 ASN 977
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 104/266 (39%), Positives = 117/266 (43%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
PSS P P+S P PSS P P+S P PSS P P+S P P+S P
Sbjct: 730 NPSSNPKPNNPASNPKPNNPSSNPKPNNPASNPKPNNPSSNPKPNNPASNPKPNNPASNP 789
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
P+S P PSS P PSS P PSS P PSS P P+ P P+
Sbjct: 790 KPNNPASNPKPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPAFNPKPNNPA 849
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
P P+S P P+S P PSS P PSS P P+S P PSS P
Sbjct: 850 FNPKPNNPASNPKPNNPASNPKPNNPSSNPKPNNPSSNPKPNNPASNPKPNNPSSNPKPN 909
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
P+S P PSS P P+S P PSS P PSS P PSS P PSS P
Sbjct: 910 NPASNPKPNNPSSNPKPNNPASNPKPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPSSNP 969
Query: 271 DLPGPSSAPDLPGPSSAPDLPGPSST 296
P+S P PSS P PSS
Sbjct: 970 KPNNPASNPKPNNPSSNPKPNNPSSN 995
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 104/266 (39%), Positives = 117/266 (43%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
P+S P PSS P P+S P PSS P P+S P P+S P P+S P
Sbjct: 739 NPASNPKPNNPSSNPKPNNPASNPKPNNPSSNPKPNNPASNPKPNNPASNPKPNNPASNP 798
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
PSS P PSS P PSS P PSS P P+ P P+ P P+
Sbjct: 799 KPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPAFNPKPNNPAFNPKPNNPA 858
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
S P P+S P PSS P PSS P P+S P PSS P P+S P
Sbjct: 859 SNPKPNNPASNPKPNNPSSNPKPNNPSSNPKPNNPASNPKPNNPSSNPKPNNPASNPKPN 918
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
PSS P P+S P PSS P PSS P PSS P PSS P P+S P
Sbjct: 919 NPSSNPKPNNPASNPKPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPASNP 978
Query: 271 DLPGPSSAPDLPGPSSAPDLPGPSST 296
PSS P PSS P PSS
Sbjct: 979 KPNNPSSNPKPNNPSSNPKPNNPSSN 1004
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 103/266 (38%), Positives = 117/266 (43%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
P+S P PSS P P+S P PSS P P+S P PSS P P+S P
Sbjct: 721 NPASNPKPNNPSSNPKPNNPASNPKPNNPSSNPKPNNPASNPKPNNPSSNPKPNNPASNP 780
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
P+S P P+S P PSS P PSS P PSS P PSS P P+
Sbjct: 781 KPNNPASNPKPNNPASNPKPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPA 840
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
P P+ P P+S P P+S P PSS P PSS P P+S P
Sbjct: 841 FNPKPNNPAFNPKPNNPASNPKPNNPASNPKPNNPSSNPKPNNPSSNPKPNNPASNPKPN 900
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
PSS P P+S P PSS P P+S P PSS P PSS P PSS P
Sbjct: 901 NPSSNPKPNNPASNPKPNNPSSNPKPNNPASNPKPNNPSSNPKPNNPSSNPKPNNPSSNP 960
Query: 271 DLPGPSSAPDLPGPSSAPDLPGPSST 296
PSS P P+S P PSS
Sbjct: 961 KPNNPSSNPKPNNPASNPKPNNPSSN 986
>gi|291393225|ref|XP_002712996.1| PREDICTED: procollagen, type IV, alpha 1-like [Oryctolagus
cuniculus]
Length = 1308
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 108/300 (36%), Gaps = 38/300 (12%)
Query: 28 DLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
D+PGP P L G S P LPG P +PG PGP + G P
Sbjct: 540 DMPGPKGDKGAQGLPGLTGQSGLPGLPGQQGTPGIPG------FPGPKGEMGVMGTPGQP 593
Query: 82 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPD------LPGPS 132
PGP+ AP LPG PG P P G LPG + D + G
Sbjct: 594 GSPGPAGAPGLPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQK 653
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPS 186
GP P + G AP LPGP + P PG P +PGP P LPG
Sbjct: 654 GDQGEKGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGVPGLPGEK 713
Query: 187 SAPDLPGPSSAPDL-----------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 235
A G + P + PG + P PG G P PGP +P
Sbjct: 714 GAKGEKGQAGLPGIGIPGRPGDKGDPGVAGFPGSPGEKGEKGSTGIPGMPGSPGPKGSPG 773
Query: 236 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
G P PGP+ G +PG + PG PG + +P +PGP
Sbjct: 774 SAGYPGLPGQPGPTGPAGQKGEPGRDGIPGSAGEKGEPGSKGDVGFPGLAGSPGIPGPKG 833
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 99/271 (36%), Gaps = 28/271 (10%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
V P +P PGP+ AP LPG PG S GP P G LPG
Sbjct: 586 VMGTPGQPGSPGPAGAPGLPGEKGDHGFPGSS------GPRGDPGFKGDKGDVGLPGKPG 639
Query: 80 APD------LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPG 130
+ D + G GP P + G AP LPGP LPG +PG
Sbjct: 640 SMDKVDMGSMKGQKGDQGEKGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPG 699
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
+PGP P LPG A G + P + P PG P + G +P
Sbjct: 700 ------IPGPQGVPGLPGEKGAKGEKGQAGLPGI----GIPGRPGDKGDPGVAGFPGSPG 749
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
G + +PG P PGP +P G P PGP+ G +PG +
Sbjct: 750 EKGEKGSTGIPG---MPGSPGPKGSPGSAGYPGLPGQPGPTGPAGQKGEPGRDGIPGSAG 806
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
PG PG + +P +PGP P
Sbjct: 807 EKGEPGSKGDVGFPGLAGSPGIPGPKGEPGF 837
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 62/164 (37%), Gaps = 21/164 (12%)
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
D+PGP G P L G S P LPG P +PG PGP + G
Sbjct: 540 DMPGPKGDK---GAQGLPGLTGQSGLPGLPGQQGTPGIPG------FPGPKGEMGVMGTP 590
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD-- 262
P PGP+ AP LPG PG S GP P G LPG + D
Sbjct: 591 GQPGSPGPAGAPGLPGEKGDHGFPGSS------GPRGDPGFKGDKGDVGLPGKPGSMDKV 644
Query: 263 ----LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL 302
+ G GP P + G AP LPGP +V G L
Sbjct: 645 DMGSMKGQKGDQGEKGPKGDPGISGTPGAPGLPGPKGSVGGMGL 688
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 105/311 (33%), Gaps = 59/311 (18%)
Query: 20 VTERPLEPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 73
++ P P LPGP + P PG P +PGP P LPG A G + P
Sbjct: 667 ISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGVPGLPGEKGAKGEKGQAGLPG 726
Query: 74 L-----------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 122
+ PG + P PG G P PGP +P G P PGP
Sbjct: 727 IGIPGRPGDKGDPGVAGFPGSPGEKGEKGSTGIPGMPGSPGPKGSPGSAGYPGLPGQPGP 786
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
+ G +PG + PG PG + +P +PGP P GP
Sbjct: 787 TGPAGQKGEPGRDGIPGSAGEKGEPGSKGDVGFPGLAGSPGIPGPKGEPGFAGPPGPQGQ 846
Query: 183 PGPSSAPDLP--------GPSSAPDLPGPSSAP----------------------DLPGP 212
PG AP P GP P LPG A L G
Sbjct: 847 PGLPGAPGRPVEGPKGDRGPQGQPGLPGEREAGSGSEGEAGLPGPMGPPGLPGLDGLKGD 906
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
P PG AP PGP P G +PG +P + G S D+ GP P
Sbjct: 907 KGNPGWPG---APGAPGPKGDPGFQG------MPGIGGSPGITG--SKGDM-GPPGVPGF 954
Query: 273 PGPSSAPDLPG 283
G P L G
Sbjct: 955 QGQKGLPGLQG 965
>gi|339246491|ref|XP_003374879.1| collagen alpha-2(IV) chain [Trichinella spiralis]
gi|316971850|gb|EFV55577.1| collagen alpha-2(IV) chain [Trichinella spiralis]
Length = 1632
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 100/282 (35%), Gaps = 22/282 (7%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P PGP P PG +PGP + LPG G AP PG PG
Sbjct: 971 PGYPGPKGEPGFPGAPGLSGIPGPKGSMGLPGFPGEKGDAGYPGAPGAPGVKGLDGFPGQ 1030
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
P PG + P LPG +PG L G P PG + P G + P +
Sbjct: 1031 KGEPGFPGLAGPPGLPGEKGRMGVPGIRGEKGLDGLPGRPGQPGAAGFPGEKGDAGLPGM 1090
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
PG G + P LPG LPG P G P LPG LPG
Sbjct: 1091 PGAPGFTGAKGDAGFPGLPGAKGDRGLPGLDGFPGQAGQKGEPGLPG------LPGQQGQ 1144
Query: 207 PDLPGPSSAPDLPGPSSAPDL--PGPSSAPDLPG--PSSAPDLPGPSSA------PDLPG 256
PGP L G AP + G P LPG P PG P LPG
Sbjct: 1145 DGFPGPKGERGLDGLPGAPGIGYKGERGEPGLPGLPGKGLPGFPGTKGERGLDGLPGLPG 1204
Query: 257 PSSAPDLPG-PSSA-----PDLPGPSSAPDLPGPSSAPDLPG 292
P AP PG P P LPG PGP LPG
Sbjct: 1205 PKGAPGYPGTPGQKGEPGLPGLPGERGRDGFPGPKGDAGLPG 1246
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 96/266 (36%), Gaps = 19/266 (7%)
Query: 34 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 93
AP PG PG P PG + P LPG +PG L G P P
Sbjct: 1014 GAPGAPGVKGLDGFPGQKGEPGFPGLAGPPGLPGEKGRMGVPGIRGEKGLDGLPGRPGQP 1073
Query: 94 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 153
G + P G + P +PG G + P LPG LPG P G P
Sbjct: 1074 GAAGFPGEKGDAGLPGMPGAPGFTGAKGDAGFPGLPGAKGDRGLPGLDGFPGQAGQKGEP 1133
Query: 154 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL--PGPSSAPDLPG--PSSAPDL 209
LPG LPG PGP L G AP + G P LPG P
Sbjct: 1134 GLPG------LPGQQGQDGFPGPKGERGLDGLPGAPGIGYKGERGEPGLPGLPGKGLPGF 1187
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--- 266
PG L G P LPGP AP PG P G P LPG PGP
Sbjct: 1188 PGTKGERGLDG---LPGLPGPKGAPGYPG---TPGQKGEPGLPGLPGERGRDGFPGPKGD 1241
Query: 267 SSAPDLPGPSSAPDLPGPSSAPDLPG 292
+ P LPG P PG P LPG
Sbjct: 1242 AGLPGLPGAIGEPGYPGIDGKPGLPG 1267
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 103/286 (36%), Gaps = 39/286 (13%)
Query: 16 LPSTVTERPLE--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSS 70
+P E+ L+ P PG A PG LPG AP G + P LPG
Sbjct: 1054 VPGIRGEKGLDGLPGRPGQPGAAGFPGEKGDAGLPGMPGAPGFTGAKGDAGFPGLPGAKG 1113
Query: 71 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 128
LPG P G P LPG LPG PGP L G AP +
Sbjct: 1114 DRGLPGLDGFPGQAGQKGEPGLPG------LPGQQGQDGFPGPKGERGLDGLPGAPGIGY 1167
Query: 129 PGPSSAPDLPG--PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
G P LPG P PG L G P LPGP AP PG PG
Sbjct: 1168 KGERGEPGLPGLPGKGLPGFPGTKGERGLDG---LPGLPGPKGAPGYPG------TPGQK 1218
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
P LPG LPG PGP LPG LPG P PG P LP
Sbjct: 1219 GEPGLPG------LPGERGRDGFPGPKGDAGLPG------LPGAIGEPGYPGIDGKPGLP 1266
Query: 247 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G P G + P PG P LPG AP PG PG
Sbjct: 1267 G---IPGAKGMAGIPGFPGLKGDPGLPGSPGAPGFPGTKGDAGFPG 1309
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 102/313 (32%), Gaps = 50/313 (15%)
Query: 27 PDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +PG AP LPG L G S P +PGP+ PG P PG AP
Sbjct: 783 PGIPGKEGLPGAPGLPGTPGFQGLKGESGLPGIPGPAGLKGEPGMPGLPGSPGTVGAPGF 842
Query: 84 PGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDL 137
PGP P P GP LPG P G P PG LPG P
Sbjct: 843 PGPKGNPGFPGLAGPKGDIGLPGLEGFPGQKGQRGLDGQPGYPGEKGDQGLPG---LPGK 899
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSA------------------------ 170
PG P + G P LPG P GP
Sbjct: 900 PGLDGLPGIKGDRGFPGLPGDKGEPGPAARDGPRGEKGMPGLPGLRGLPGPPGPTGPPGF 959
Query: 171 -----------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
P PGP P PG +PGP + LPG G AP P
Sbjct: 960 PGPKGDAGVGLPGYPGPKGEPGFPGAPGLSGIPGPKGSMGLPGFPGEKGDAGYPGAPGAP 1019
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 279
G PG P PG + P LPG +PG L G P PG + P
Sbjct: 1020 GVKGLDGFPGQKGEPGFPGLAGPPGLPGEKGRMGVPGIRGEKGLDGLPGRPGQPGAAGFP 1079
Query: 280 DLPGPSSAPDLPG 292
G + P +PG
Sbjct: 1080 GEKGDAGLPGMPG 1092
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 78/208 (37%), Gaps = 21/208 (10%)
Query: 66 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
PG S AP +PG +PG PG + P +PG P L G P +PG
Sbjct: 735 PGLSGAPGMPGLKGRMGVPGIRGEKGEPGAAGLPGVPG---LPGLKGDQGFPGIPGKEGL 791
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
P AP LPG L G S P +PGP+ PG P PG AP PGP
Sbjct: 792 P------GAPGLPGTPGFQGLKGESGLPGIPGPAGLKGEPGMPGLPGSPGTVGAPGFPGP 845
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSA 242
P PG L GP LPG P G P PG LPG
Sbjct: 846 KGNPGFPG------LAGPKGDIGLPGLEGFPGQKGQRGLDGQPGYPGEKGDQGLPG---L 896
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
P PG P + G P LPG P
Sbjct: 897 PGKPGLDGLPGIKGDRGFPGLPGDKGEP 924
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 109/299 (36%), Gaps = 35/299 (11%)
Query: 38 LPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 94
+PGP A P LPGP P PG PG P G + AP G AP + G
Sbjct: 621 IPGPPGADGLPGLPGPKGEPGFPGMKGERGAPGLMGLPGPKGSTGAPGPEGQMGAPGIRG 680
Query: 95 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-----------SAPDLPGPSSA 143
PG P PG P LPG + G S PG S A
Sbjct: 681 EKGESGFPGAPGLPGPPGKDGLPGLPGRTGEKGEQGVSVPGLPGPPGFPGFKGEPGLSGA 740
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDL 200
P +PG +PG PG + P +PG P L G P +PG AP L
Sbjct: 741 PGMPGLKGRMGVPGIRGEKGEPGAAGLPGVPG---LPGLKGDQGFPGIPGKEGLPGAPGL 797
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
PG L G S P +PGP+ PG P PG AP PGP P PG
Sbjct: 798 PGTPGFQGLKGESGLPGIPGPAGLKGEPGMPGLPGSPGTVGAPGFPGPKGNPGFPG---- 853
Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPA 319
L GP LPG P G PG Y GE G Q P GL KP
Sbjct: 854 --LAGPKGDIGLPGLEGFPGQKGQRGLDGQPG--------YPGEKGDQGLP-GLPGKPG 901
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 107/329 (32%), Gaps = 52/329 (15%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDL 83
P +PGP+ PG P PG AP PGP P P GP LPG P
Sbjct: 813 PGIPGPAGLKGEPGMPGLPGSPGTVGAPGFPGPKGNPGFPGLAGPKGDIGLPGLEGFPGQ 872
Query: 84 PGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---L 137
G P PG LPG P PG P + G P LPG P
Sbjct: 873 KGQRGLDGQPGYPGEKGDQGLPG---LPGKPGLDGLPGIKGDRGFPGLPGDKGEPGPAAR 929
Query: 138 PGPSSA-----------------------------------PDLPGPSSAPDLPGPSSAP 162
GP P PGP P PG
Sbjct: 930 DGPRGEKGMPGLPGLRGLPGPPGPTGPPGFPGPKGDAGVGLPGYPGPKGEPGFPGAPGLS 989
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 222
+PGP + LPG G AP PG PG P PG + P LPG
Sbjct: 990 GIPGPKGSMGLPGFPGEKGDAGYPGAPGAPGVKGLDGFPGQKGEPGFPGLAGPPGLPGEK 1049
Query: 223 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
+PG L G P PG + P G + P +PG G + P LP
Sbjct: 1050 GRMGVPGIRGEKGLDGLPGRPGQPGAAGFPGEKGDAGLPGMPGAPGFTGAKGDAGFPGLP 1109
Query: 283 GPSSAPDLPGPSSTVLGSYLGEAGHQKSP 311
G LPG L + G+AG + P
Sbjct: 1110 GAKGDRGLPG-----LDGFPGQAGQKGEP 1133
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 77/213 (36%), Gaps = 30/213 (14%)
Query: 14 DYLPSTVTER--PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL--PGPSSAPDLPG-- 67
D P ++ P P LPG PGP L G AP + G P LPG
Sbjct: 1121 DGFPGQAGQKGEPGLPGLPGQQGQDGFPGPKGERGLDGLPGAPGIGYKGERGEPGLPGLP 1180
Query: 68 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 127
P PG L G P LPGP AP PG PG P LPG
Sbjct: 1181 GKGLPGFPGTKGERGLDG---LPGLPGPKGAPGYPG------TPGQKGEPGLPG------ 1225
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
LPG PGP LPG LPG P PG P LPG P G +
Sbjct: 1226 LPGERGRDGFPGPKGDAGLPG------LPGAIGEPGYPGIDGKPGLPG---IPGAKGMAG 1276
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
P PG P LPG AP PG PG
Sbjct: 1277 IPGFPGLKGDPGLPGSPGAPGFPGTKGDAGFPG 1309
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 98/315 (31%), Gaps = 50/315 (15%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P L G P + G P G P LPG PG LPG P PG
Sbjct: 744 PGLKGRMGVPGIRGEKGEPGAAGLPGVPGLPGLKGDQGFPGIPGKEGLPGAPGLPGTPGF 803
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSA 143
L G S P +PGP+ PG P PG AP PGP P P GP
Sbjct: 804 QG---LKGESGLPGIPGPAGLKGEPGMPGLPGSPGTVGAPGFPGPKGNPGFPGLAGPKGD 860
Query: 144 PDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
LPG P G P PG LPG P PG P + G P L
Sbjct: 861 IGLPGLEGFPGQKGQRGLDGQPGYPGEKGDQGLPG---LPGKPGLDGLPGIKGDRGFPGL 917
Query: 201 PGPSSAPD---LPGPSSA-----------------------------------PDLPGPS 222
PG P GP P PGP
Sbjct: 918 PGDKGEPGPAARDGPRGEKGMPGLPGLRGLPGPPGPTGPPGFPGPKGDAGVGLPGYPGPK 977
Query: 223 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
P PG +PGP + LPG G AP PG PG P P
Sbjct: 978 GEPGFPGAPGLSGIPGPKGSMGLPGFPGEKGDAGYPGAPGAPGVKGLDGFPGQKGEPGFP 1037
Query: 283 GPSSAPDLPGPSSTV 297
G + P LPG +
Sbjct: 1038 GLAGPPGLPGEKGRM 1052
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 108/332 (32%), Gaps = 69/332 (20%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-----P 81
P +PG LPG P PG A PG P PG PG P
Sbjct: 525 PGIPGEKGISGLPGQPGLPGAPGALGAKGEPGLPGIPGRPGKDGPTGFPGQKGEPGYGLP 584
Query: 82 DLPGPSSAP--------------------------DLPGPSSA---PDLPGPSSAPDLPG 112
LPG + A +PGP A P LPGP P PG
Sbjct: 585 GLPGLAGAKGEAGFPGLPGSPGLPGPPGPLPKVLDRIPGPPGADGLPGLPGPKGEPGFPG 644
Query: 113 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------------------PD 154
PG P G + AP G AP + G P
Sbjct: 645 MKGERGAPGLMGLPGPKGSTGAPGPEGQMGAPGIRGEKGESGFPGAPGLPGPPGKDGLPG 704
Query: 155 LPGPSSAPDLPGPS-----------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
LPG + G S PG S AP +PG +PG PG
Sbjct: 705 LPGRTGEKGEQGVSVPGLPGPPGFPGFKGEPGLSGAPGMPGLKGRMGVPGIRGEKGEPGA 764
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
+ P +PG P L G P +PG AP LPG L G S P +PGP+
Sbjct: 765 AGLPGVPG---LPGLKGDQGFPGIPGKEGLPGAPGLPGTPGFQGLKGESGLPGIPGPAGL 821
Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
PG P PG AP PGP P PG
Sbjct: 822 KGEPGMPGLPGSPGTVGAPGFPGPKGNPGFPG 853
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 101/318 (31%), Gaps = 45/318 (14%)
Query: 14 DYLPSTVTERPL--EPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 68
+ P +R L +P PG P LPG LPG PG PGP
Sbjct: 867 EGFPGQKGQRGLDGQPGYPGEKGDQGLPGLPGKPGLDGLPGIKGDRGFPGLPGDKGEPGP 926
Query: 69 SSAPDLPGPSSA--------------------------------PDLPGPSSAPDLPGPS 96
++ G P PGP P PG
Sbjct: 927 AARDGPRGEKGMPGLPGLRGLPGPPGPTGPPGFPGPKGDAGVGLPGYPGPKGEPGFPGAP 986
Query: 97 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 156
+PGP + LPG G AP PG PG P PG + P LP
Sbjct: 987 GLSGIPGPKGSMGLPGFPGEKGDAGYPGAPGAPGVKGLDGFPGQKGEPGFPGLAGPPGLP 1046
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
G +PG L G P PG + P G + P +PG G + P
Sbjct: 1047 GEKGRMGVPGIRGEKGLDGLPGRPGQPGAAGFPGEKGDAGLPGMPGAPGFTGAKGDAGFP 1106
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 276
LPG LPG P G P LPG LPG PGP L G
Sbjct: 1107 GLPGAKGDRGLPGLDGFPGQAGQKGEPGLPG------LPGQQGQDGFPGPKGERGLDGLP 1160
Query: 277 SAPDL--PGPSSAPDLPG 292
AP + G P LPG
Sbjct: 1161 GAPGIGYKGERGEPGLPG 1178
>gi|405978684|gb|EKC43054.1| Collagen alpha-1(IV) chain [Crassostrea gigas]
Length = 1630
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 109/289 (37%), Gaps = 18/289 (6%)
Query: 9 VFTEADYLPSTVTE--RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 66
+ D L T E P P +PG P L G P LPG + P + G +P
Sbjct: 659 INVNVDLLKGTKGEPGFPGNPGIPGRDGLPGLKGDRGEPGLPGVNGLPGMKGERGFDGIP 718
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
G + LPGP GPS +P G P PGP P + G S P G SS
Sbjct: 719 GEAGPRGLPGPRGDRGSDGPSGSPGFDG---RPGEPGPQGLPGVKGDSGLPGRDGLSSRG 775
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
+ G S P PG P LPG P G GPS P LPG PG
Sbjct: 776 E-KGDSGLPGRPGLQGQPGLPGQDGVPGQDGLPGMKGDTGPSGLPGLPGS------PGLK 828
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
P + GP PG P LPG A P LPG +PG PG AP
Sbjct: 829 GEPGIEGPEGTRGTPGEDGRPGLPGVVGAKGTPGLPGADGLSGIPGERGEAGFPGQPGAP 888
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
L GP P LPG PGP P G P PG P LPG
Sbjct: 889 GLDGPQGPPGLPGERGRDGSPGPKGEPGFVG---IPGEPGRDGNPGLPG 934
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 104/302 (34%), Gaps = 42/302 (13%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
P PGP P + G S P G SS + G S P PG P LPG P G
Sbjct: 747 RPGEPGPQGLPGVKGDSGLPGRDGLSSRGE-KGDSGLPGRPGLQGQPGLPGQDGVPGQDG 805
Query: 86 PSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPG 139
GPS P LPG P + GP PG P LPG A P LPG
Sbjct: 806 LPGMKGDTGPSGLPGLPGSPGLKGEPGIEGPEGTRGTPGEDGRPGLPGVVGAKGTPGLPG 865
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDL------------------PGPSSAPDLPGPSSAPD 181
+PG PG AP L PGP P G P
Sbjct: 866 ADGLSGIPGERGEAGFPGQPGAPGLDGPQGPPGLPGERGRDGSPGPKGEPGFVG---IPG 922
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP------GPSSAPDLPGPSSAPD 235
PG P LPG + G P +PG P GPS P L G
Sbjct: 923 EPGRDGNPGLPGLQG---MKGERGFPGIPGEQGRSGEPGQKGDTGPSGLPGLQGVPGNDG 979
Query: 236 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-----SAPDLPGPSSAPDLPGPSSAPDL 290
LPG PG +P PG P LPG + +PG S P G AP L
Sbjct: 980 LPGVKGESGRPGSPGSPGQPGQDGLPGLPGMKGDQGPTGVGIPGESGIPGERGRDGAPGL 1039
Query: 291 PG 292
PG
Sbjct: 1040 PG 1041
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 102/307 (33%), Gaps = 47/307 (15%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDL 83
P PG P LPG P G GPS P LPG P + GP
Sbjct: 783 PGRPGLQGQPGLPGQDGVPGQDGLPGMKGDTGPSGLPGLPGSPGLKGEPGIEGPEGTRGT 842
Query: 84 PGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------------ 128
PG P LPG A P LPG +PG PG AP L
Sbjct: 843 PGEDGRPGLPGVVGAKGTPGLPGADGLSGIPGERGEAGFPGQPGAPGLDGPQGPPGLPGE 902
Query: 129 ------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
PGP P G P PG P LPG + G P +PG
Sbjct: 903 RGRDGSPGPKGEPGFVG---IPGEPGRDGNPGLPGLQG---MKGERGFPGIPGEQGRSGE 956
Query: 183 P------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS----- 231
P GPS P L G LPG PG +P PG P LPG
Sbjct: 957 PGQKGDTGPSGLPGLQGVPGNDGLPGVKGESGRPGSPGSPGQPGQDGLPGLPGMKGDQGP 1016
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLP------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
+ +PG S P G AP LP G P PG PGP+ +PG
Sbjct: 1017 TGVGIPGESGIPGERGRDGAPGLPGMKGELGQQGLPGFPGMKGERGFPGPAGQNGIPGND 1076
Query: 286 SAPDLPG 292
P + G
Sbjct: 1077 GLPGMKG 1083
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 101/304 (33%), Gaps = 44/304 (14%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDL 83
P PG P + GP PG P LPG A P LPG +PG
Sbjct: 822 PGSPGLKGEPGIEGPEGTRGTPGEDGRPGLPGVVGAKGTPGLPGADGLSGIPGERGEAGF 881
Query: 84 PGPSSAPDL------------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
PG AP L PGP P G P PG P LPG
Sbjct: 882 PGQPGAPGLDGPQGPPGLPGERGRDGSPGPKGEPGFVG---IPGEPGRDGNPGLPGLQG- 937
Query: 126 PDLPGPSSAPDLPGPSSAPDLP------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
+ G P +PG P GPS P L G LPG PG +
Sbjct: 938 --MKGERGFPGIPGEQGRSGEPGQKGDTGPSGLPGLQGVPGNDGLPGVKGESGRPGSPGS 995
Query: 180 PDLPGPSSAPDLPGPS-----SAPDLPGPSSAPDLPGPSSAPDLP------GPSSAPDLP 228
P PG P LPG + +PG S P G AP LP G P P
Sbjct: 996 PGQPGQDGLPGLPGMKGDQGPTGVGIPGESGIPGERGRDGAPGLPGMKGELGQQGLPGFP 1055
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
G PGP+ +PG P + G PG + PG + P GP
Sbjct: 1056 GMKGERGFPGPAGQNGIPGNDGLPGMKGNPGFNGNPGRAGLKGEPGLNGIPGREGPKGEA 1115
Query: 289 DLPG 292
LPG
Sbjct: 1116 GLPG 1119
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 106/283 (37%), Gaps = 39/283 (13%)
Query: 45 PDLPGPS------SAPDLPGPS------SAPDLPGPSSAPDLPGPSSAP--DLPGPSSAP 90
LPGP +P LPG LPG P L GP P LPG
Sbjct: 575 NGLPGPQGPRGIDGSPGLPGLKGDRGVDGRDGLPGNPGLPGLIGPKGNPGIGLPGIPGER 634
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
+PG + P L G +PG + + L G P PG P +PG P L
Sbjct: 635 GIPGDNGLPGLNGMKGDKGIPGETINVNVDLLKGTKGEPGFPG---NPGIPGRDGLPGLK 691
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------P 201
G P LPG + P + G +PG + LPGP GPS +P P
Sbjct: 692 GDRGEPGLPGVNGLPGMKGERGFDGIPGEAGPRGLPGPRGDRGSDGPSGSPGFDGRPGEP 751
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLP--- 255
GP P + G S P G SS + G S P PG P LPG P LP
Sbjct: 752 GPQGLPGVKGDSGLPGRDGLSSRGE-KGDSGLPGRPGLQGQPGLPGQDGVPGQDGLPGMK 810
Query: 256 ---GPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPG 292
GPS P LPG P + GP PG P LPG
Sbjct: 811 GDTGPSGLPGLPGSPGLKGEPGIEGPEGTRGTPGEDGRPGLPG 853
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 78/219 (35%), Gaps = 15/219 (6%)
Query: 29 LPGPSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+PG S P G AP LPG P PG PGP+ +PG P
Sbjct: 1021 IPGESGIPGERGRDGAPGLPGMKGELGQQGLPGFPGMKGERGFPGPAGQNGIPGNDGLPG 1080
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
+ G PG + PG + P GP LPG P GP PG +
Sbjct: 1081 MKGNPGFNGNPGRAGLKGEPGLNGIPGREGPKGEAGLPG---VPGERGPEGLKGEPGLNG 1137
Query: 143 APDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
P PG + P + G LPGP LPG + G +P PGP
Sbjct: 1138 LPGSPGVAGLPGMKGDRGRDGVNGLPGPKGDSGLPGRDG---IKGERGSPGFPGPEGREG 1194
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
LPG G + P PG P L G S +PG
Sbjct: 1195 LPGMKGERGEQGLTGVPGEPGQPGFPGLKGDSGDRGVPG 1233
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 97/309 (31%), Gaps = 48/309 (15%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E PGP+ +PG P + G PG + PG + P GP LPG
Sbjct: 1060 ERGFPGPAGQNGIPGNDGLPGMKGNPGFNGNPGRAGLKGEPGLNGIPGREGPKGEAGLPG 1119
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSS 142
P GP PG + P PG + P + G LPGP LPG
Sbjct: 1120 ---VPGERGPEGLKGEPGLNGLPGSPGVAGLPGMKGDRGRDGVNGLPGPKGDSGLPGRDG 1176
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APD 199
+ G +P PGP LPG G + P PG P L G S P
Sbjct: 1177 ---IKGERGSPGFPGPEGREGLPGMKGERGEQGLTGVPGEPGQPGFPGLKGDSGDRGVPG 1233
Query: 200 LPG---------------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP----- 239
LPG +P LPG LPG + G LPG
Sbjct: 1234 LPGLQGMPGPEGPPGEPGVPGSPGLPGLKGDAGLPGRDGFEGIKGERGPSGLPGAMGFKG 1293
Query: 240 ----------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
+ + G G + P LPG PGP P +PG
Sbjct: 1294 DRGFPGEKGSIGPQASTKGMRIKGEKGETGDRGRAGFPGLPGSKGDAGFPGPKGFPGIPG 1353
Query: 284 PSSAPDLPG 292
PG
Sbjct: 1354 ERGVQGFPG 1362
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 88/290 (30%), Gaps = 42/290 (14%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDL 83
P GP LPG P GP PG + P PG + P + G L
Sbjct: 1106 PGREGPKGEAGLPG---VPGERGPEGLKGEPGLNGLPGSPGVAGLPGMKGDRGRDGVNGL 1162
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
PGP LPG + G +P PGP LPG G + P PG
Sbjct: 1163 PGPKGDSGLPGRDG---IKGERGSPGFPGPEGREGLPGMKGERGEQGLTGVPGEPGQPGF 1219
Query: 144 PDLPGPSS---APDLPG------------------PSSAPDLPGPSSAPDLPGPSSAPDL 182
P L G S P LPG P L G + P G
Sbjct: 1220 PGLKGDSGDRGVPGLPGLQGMPGPEGPPGEPGVPGSPGLPGLKGDAGLPGRDGFEGIKGE 1279
Query: 183 PGPSSAPDLPGPSSAPDLPGP---------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 233
GPS P G PG + + G G + P LPG
Sbjct: 1280 RGPSGLPGAMGFKGDRGFPGEKGSIGPQASTKGMRIKGEKGETGDRGRAGFPGLPGSKGD 1339
Query: 234 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
PGP P +PG PG PG P +PG P G
Sbjct: 1340 AGFPGPKGFPGIPGERGVQGFPGMKGESGFPG---QPGIPGEDGFPGAQG 1386
>gi|401400184|ref|XP_003880732.1| putative C protein immunoglobulin-A-binding beta antigen [Neospora
caninum Liverpool]
gi|325115143|emb|CBZ50699.1| putative C protein immunoglobulin-A-binding beta antigen [Neospora
caninum Liverpool]
Length = 409
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 68/173 (39%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 97
LP P LP P +PG P LP P +PG P LP P +PG
Sbjct: 179 LPSIGDLPQLPRLGELPPIPGLGELPQLPNLGELPPIPGLGELPQLPRLGELPPIPGLGE 238
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
P LP P LP P LP P +PG P LP P +PG P LP
Sbjct: 239 LPQLPSLGEVPQLPRLGELPQLPSLGELPPIPGLGELPQLPSLGELPPIPGLGELPQLPS 298
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
P +PG P LPG P +PG P LP P LPG AP P
Sbjct: 299 LGELPPIPGLGELPQLPGLGELPPIPGLGERPQLPSLGELPQLPGLGEAPAFP 351
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 68/173 (39%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
LP P LP P +PG P LP P +PG P LP P +PG
Sbjct: 179 LPSIGDLPQLPRLGELPPIPGLGELPQLPNLGELPPIPGLGELPQLPRLGELPPIPGLGE 238
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
P LP P LP P LP P +PG P LP P +PG P LP
Sbjct: 239 LPQLPSLGEVPQLPRLGELPQLPSLGELPPIPGLGELPQLPSLGELPPIPGLGELPQLPS 298
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
P +PG P LPG P +PG P LP P LPG AP P
Sbjct: 299 LGELPPIPGLGELPQLPGLGELPPIPGLGERPQLPSLGELPQLPGLGEAPAFP 351
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 68/173 (39%)
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
LP P LP P +PG P LP P +PG P LP P +PG
Sbjct: 179 LPSIGDLPQLPRLGELPPIPGLGELPQLPNLGELPPIPGLGELPQLPRLGELPPIPGLGE 238
Query: 161 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
P LP P LP P LP P +PG P LP P +PG P LP
Sbjct: 239 LPQLPSLGEVPQLPRLGELPQLPSLGELPPIPGLGELPQLPSLGELPPIPGLGELPQLPS 298
Query: 221 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 273
P +PG P LPG P +PG P LP P LPG AP P
Sbjct: 299 LGELPPIPGLGELPQLPGLGELPPIPGLGERPQLPSLGELPQLPGLGEAPAFP 351
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 105/305 (34%), Gaps = 43/305 (14%)
Query: 83 LPGPSSAPD--------------LPGPSSAPDLPGPSSA--PDLPGPSSAP--------- 117
P P S P LP P P + G + P P P + P
Sbjct: 112 FPLPGSPPTTPDFPVLVPLPQSGLPSPFPPPLILGEARGQPPSPPFPYTIPATPELLSLL 171
Query: 118 ------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
LP P LP P +PG P LP P +PG P LP P
Sbjct: 172 ARFNFSGLPSIGDLPQLPRLGELPPIPGLGELPQLPNLGELPPIPGLGELPQLPRLGELP 231
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
+PG P LP P LP P LP P +PG P LP P +PG
Sbjct: 232 PIPGLGELPQLPSLGEVPQLPRLGELPQLPSLGELPPIPGLGELPQLPSLGELPPIPGLG 291
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
P LP P +PG P LPG P +PG P LP P LPG AP P
Sbjct: 292 ELPQLPSLGELPPIPGLGELPQLPGLGELPPIPGLGERPQLPSLGELPQLPGLGEAPAFP 351
Query: 292 GPSSTVLGSYLGEAGHQKSPK----GLEPKPAQISFVLNIFANFHQTLRFLHFSCTSLVV 347
+ L G G GL +P +L I AN + R + L+
Sbjct: 352 TLPTLELPKMEGGHGFGNFTNIDLPGLRGRPE----LLGIPANLERLQR----AIEDLLR 403
Query: 348 TRATV 352
ATV
Sbjct: 404 QAATV 408
>gi|410047940|ref|XP_003314261.2| PREDICTED: collagen alpha-1(IV) chain [Pan troglodytes]
Length = 1770
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 111/298 (37%), Gaps = 32/298 (10%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDL-----------PGPSSAPDLPGPSSAPDL 74
P + G S P LPG AP +PG P S ++ PGP AP LPG
Sbjct: 952 PGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDHGF 1011
Query: 75 PG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
PG P P L G LPG + D S G GP G
Sbjct: 1012 PGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSRGD 1071
Query: 132 SSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 182
P +PG + P PGP P + G AP LPGP + P PG P +
Sbjct: 1072 PGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 1131
Query: 183 PGPSSAPDLPGPSSAPDLPGPSS-----APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
PGP +P LPG A G + P L G + G +P G +P
Sbjct: 1132 PGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLRGEKGDQGIAGFPGSPGEKGEKGTIGIP 1191
Query: 238 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
G +P L G + PG +P LPG LPG P + G + P PGP+
Sbjct: 1192 GMPGSPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTG 1246
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 102/282 (36%), Gaps = 25/282 (8%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D+PGP G P + G S P LPG AP +PG PG + G
Sbjct: 938 DMPGPKGDK---GAQGLPGITGQSGLPGLPGQQGAPGIPG------FPGSKGEMGVMGTP 988
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
P PGP AP LPG PG P P L G LPG + D S
Sbjct: 989 GQPGSPGPVGAPGLPGEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMK 1048
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLP 201
G GP G P +PG + P PGP P + G AP LP
Sbjct: 1049 GQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLP 1108
Query: 202 GPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
GP + P PG P +PGP +P LPG A G + P + P L
Sbjct: 1109 GPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLR 1164
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
G + G +P G +PG +P L G +V
Sbjct: 1165 GEKGDQGIAGFPGSPGEKGEKGTIGIPGMPGSPGLKGSPGSV 1206
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 93/243 (38%), Gaps = 26/243 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PGP P + G AP LPGP LPG +PG +PGP +P
Sbjct: 1086 QPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPG------IPGPQGSPG 1139
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG A G + P + P L G + G +P G +PG
Sbjct: 1140 LPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGIAGFPGSPGEKGEKGTIGIPGMPG 1195
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+P L G + PG +P LPG LPG P + G + P PGP+ G
Sbjct: 1196 SPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPT------G 1246
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P+ PG P G P LPG P PG A G PG + +P
Sbjct: 1247 PAGQKGEPGSDGIPGSAGEKGEPGLPG-RGFPGFPG---AKGDKGSKGEVGFPGLAGSPG 1302
Query: 263 LPG 265
+PG
Sbjct: 1303 IPG 1305
>gi|301780422|ref|XP_002925627.1| PREDICTED: collagen alpha-6(IV) chain-like [Ailuropoda melanoleuca]
Length = 1754
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 112/294 (38%), Gaps = 44/294 (14%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
LPG PG LPG P LPG + +PG LPG AP PGP
Sbjct: 619 GLPGSPGPRGFPGDQGINGLPGQQGLPGLPGITLPCIIPGSYGPSGLPG---APGFPGPK 675
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
A LPG P L G P PG P+LPG PGP LPG P LP
Sbjct: 676 GAHGLPGTPGQPGLRGNKGEPGSPGSVHLPELPG------FPGPRGEKGLPG---FPGLP 726
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAP--------DLPGPSSAPDLPGPSSAP---DLPGPSS 196
G LPG +P LPG AP PG LPG P LPGP
Sbjct: 727 GKDG---LPGKLGSPGLPGSKGAPGDIFGAENGAPGEQGLQGLPGDRGVPGDSGLPGPKG 783
Query: 197 APDL------PGPSSAPDLPGPSSAPDLPGP------SSAPDLPGPSSAPDLPGPSSAP- 243
G +P PG P PGP P LPG AP PGPS P
Sbjct: 784 LLGKSGLLGPKGEQGSPGTPGHMGQPGSPGPDGLFGVKGKPGLPG---APGFPGPSGHPG 840
Query: 244 --DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
+ G + AP G P L G +P L G + LPG + P LPGP
Sbjct: 841 KKGVRGEAGAPSSAGKRGLPGLKGLPGSPGLVGFLGSSGLPGNTGLPGLPGPKG 894
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 110/324 (33%), Positives = 130/324 (40%), Gaps = 44/324 (13%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS + P P PGP A LPG P L G P PG P+LPG P
Sbjct: 658 GSYGPSGL---PGAPGFPGPKGAHGLPGTPGQPGLRGNKGEPGSPGSVHLPELPGFPGPR 714
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDL 128
LPG P LPG LPG +P LPG AP D+ G + PG L
Sbjct: 715 GEKGLPG---FPGLPGKDG---LPGKLGSPGLPGSKGAPGDIFGAENG--APGEQGLQGL 766
Query: 129 PGPSSAP---DLPGPSSAPDL------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
PG P LPGP G +P PG P PGP L G
Sbjct: 767 PGDRGVPGDSGLPGPKGLLGKSGLLGPKGEQGSPGTPGHMGQPGSPGPDG---LFGVKGK 823
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
P LPG AP PGPS P G + G + AP G P L G +P L G
Sbjct: 824 PGLPG---APGFPGPSGHPGKKG------VRGEAGAPSSAGKRGLPGLKGLPGSPGLVGF 874
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLG 299
+ LPG + P LPGP G + P +PG P +PG S + G + V
Sbjct: 875 LGSSGLPGNTGLPGLPGPKGEKGSFGLAGFPGMPG---LPGIPGASGLKGISGSTGRV-- 929
Query: 300 SYLGEAG--HQKSPKGLEPKPAQI 321
G+AG +K +G +P PA I
Sbjct: 930 GPFGQAGSAGEKGDRG-DPGPAGI 952
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 101/283 (35%), Gaps = 61/283 (21%)
Query: 49 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 108
GPS AP L GP P GP SS +PG P GP PG + AP
Sbjct: 522 GPSGAPGLFGP---PGHAGPKGEKGEQTLSSGSGVPGEQGDP---GPQGL---PGETGAP 572
Query: 109 --------------------DLPGPSSAPDLPGPSS--------APDLPGPSSAPDLPGP 140
PG P LPG LPG PG
Sbjct: 573 GKDGIPGLPGLPGLPGDGGQGFPGEKGLPGLPGEKGHSGPTGPPGIGLPGSPGPRGFPGD 632
Query: 141 SSAPDLPGPSSAPDLPG---PSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGP 194
LPG P LPG P P GPS AP PGP A LPG P L G
Sbjct: 633 QGINGLPGQQGLPGLPGITLPCIIPGSYGPSGLPGAPGFPGPKGAHGLPGTPGQPGLRGN 692
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
P PG P+LPG PGP LPG P LPG LPG +P L
Sbjct: 693 KGEPGSPGSVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGKLGSPGL 740
Query: 255 PGPSSAP-DLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGP 293
PG AP D+ G + PG LPG P LPGP
Sbjct: 741 PGSKGAPGDIFGAENG--APGEQGLQGLPGDRGVPGDSGLPGP 781
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 51/132 (38%), Gaps = 6/132 (4%)
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G P LPGP L G P G + PG + P + G A LPGP
Sbjct: 288 GEKGIPGLPGPRGPMGLEGLQGPPGSQGKKGSSGFPGLNGFPGIKGEQGAIGLPGPDVFI 347
Query: 235 DLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
D G S P PG P L G LPGPS P LP AP GP P L G
Sbjct: 348 DTDGAVISGYPGDPGMPGLPGLKGDEGIQGLPGPSGVPGLPALPGAPGALGPQGVPGLKG 407
Query: 293 ----PSSTVLGS 300
P T +G+
Sbjct: 408 DQGNPGRTTVGT 419
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 108/292 (36%), Gaps = 37/292 (12%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDL 83
P PG P PGP L G P LPG AP PGPS P + G + AP
Sbjct: 800 PGTPGHMGQPGSPGPDG---LFGVKGKPGLPG---APGFPGPSGHPGKKGVRGEAGAPSS 853
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G P L G +P L G + LPG + P LPGP G + P +PG
Sbjct: 854 AGKRGLPGLKGLPGSPGLVGFLGSSGLPGNTGLPGLPGPKGEKGSFGLAGFPGMPG---- 909
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-------------- 189
LPG A L G S + GP G PGP+ P
Sbjct: 910 --LPGIPGASGLKGISGSTGRVGPFGQAGSAGEKGDRGDPGPAGIPSPRPPMLNLRFKGD 967
Query: 190 -DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD-LPGPSSAPDLPGPSSAPDLPG 247
G + PGP GP P LPG P + G LPG + LPG
Sbjct: 968 KGSRGSAGLDGFPGPRGDKGQAGPPGPPGLPGAPGFPSTIKGLIGRAGLPGSTGQRGLPG 1027
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLG 299
+P + G P +PG S + L G AP LPG S P G LG
Sbjct: 1028 LKGSPGITG---FPGIPGESGSQGLNG---APGLPGTSGLPGSKGDQGQTLG 1073
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 114/360 (31%), Gaps = 70/360 (19%)
Query: 4 PFDKHVFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 63
P K V EA PS+ +R L P L G +P L G + LPG + P LPGP
Sbjct: 839 PGKKGVRGEAG-APSSAGKRGL-PGLKGLPGSPGLVGFLGSSGLPGNTGLPGLPGPKGEK 896
Query: 64 D---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--- 117
L G P LPG A L G S + GP G PGP+ P
Sbjct: 897 GSFGLAGFPGMPGLPGIPGASGLKGISGSTGRVGPFGQAGSAGEKGDRGDPGPAGIPSPR 956
Query: 118 ---------------------DLPGP----------------------SSAPDLPGPSSA 134
PGP S+ L G +
Sbjct: 957 PPMLNLRFKGDKGSRGSAGLDGFPGPRGDKGQAGPPGPPGLPGAPGFPSTIKGLIGRAGL 1016
Query: 135 PDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL--------- 182
P G P L PG + P +PG S + L G AP LPG S P
Sbjct: 1017 PGSTGQRGLPGLKGSPGITGFPGIPGESGSQGLNG---APGLPGTSGLPGSKGDQGQTLG 1073
Query: 183 ----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
PGP P G G PG G S PG P + G
Sbjct: 1074 ISGSPGPKGQPGESGFKGVKGTDGLVGDVGFPGSKGEDGNVGISGDVGFPGSPGLPGIAG 1133
Query: 239 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVL 298
P PG P GP + L G P LPG LPG PGPS T +
Sbjct: 1134 MRGNPGFPGSPGHPGATGPLGSSGLMGTKGFPGLPGLHGLNGLPGTKGTHGTPGPSITGV 1193
>gi|62088872|dbj|BAD92883.1| COL4A1 protein variant [Homo sapiens]
Length = 847
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 117/308 (37%), Gaps = 27/308 (8%)
Query: 14 DYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSS 70
+ P + L P + G S P LPG AP +PG P S ++ G P PGP
Sbjct: 17 NRFPRAARGQGL-PGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVG 75
Query: 71 APDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 127
AP LPG PG P P L G LPG + D S G
Sbjct: 76 APGLPGEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKG 135
Query: 128 LPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA----- 179
GP G P +PG + P PGP P + G AP LPGP +
Sbjct: 136 QIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMG 195
Query: 180 -PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-----SAPDLPGPSSAPDLPGPSSA 233
P PG P +PGP +P LPG A G + P L G + G +
Sbjct: 196 LPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLRGEKGDQGIAGFPGS 255
Query: 234 PDLPGPSSAPDLPGPSSAPDLPG-PSS-----APDLPGPSSAPDLPGPSSAPDLPGPSSA 287
P G + +PG +P L G P S +P LPG LPG P + G +
Sbjct: 256 PGEKGEKGSIGIPGMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGL 315
Query: 288 PDLPGPSS 295
P PGP+
Sbjct: 316 PGTPGPTG 323
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 106/284 (37%), Gaps = 19/284 (6%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--G 85
+ G S A PG + P P + G S P LPG AP +PG P S ++ G
Sbjct: 4 ISGASRATGTPGRNRFPRAARGQGLPGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMG 63
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
P PGP AP LPG PG P P L G LPG + D S
Sbjct: 64 TPGQPGSPGPVGAPGLPGEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGS 123
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPD 199
G GP G P +PG + P PGP P + G AP
Sbjct: 124 MKGQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPG 183
Query: 200 LPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
LPGP + P PG P +PGP +P LPG A G + P + P
Sbjct: 184 LPGPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPG 239
Query: 254 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
L G + G +P G + +PG +P L G +V
Sbjct: 240 LRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSV 283
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 109/303 (35%), Gaps = 43/303 (14%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLP- 75
V P +P PGP AP LPG PG P P L G LPG + D
Sbjct: 61 VMGTPGQPGSPGPVGAPGLPGEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVD 120
Query: 76 --------------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
G + PG P G + P PGP P + G
Sbjct: 121 MGSMKGQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPG 180
Query: 116 APDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
AP LPGP + P PG P +PGP +P LPG A G + P +
Sbjct: 181 APGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGI----G 236
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
P L G + G +P G + +PG +P L G + PG +P LPG
Sbjct: 237 IPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSVGYPG---SPGLPG 293
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
LPG P + G + P PGP+ GP+ PG P G P
Sbjct: 294 EKGDKGLPGLDGIPGVKGEAGLPGTPGPT------GPAGQKGEPGSDGIPGSAGEKGEPG 347
Query: 290 LPG 292
LPG
Sbjct: 348 LPG 350
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 94/243 (38%), Gaps = 26/243 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PGP P + G AP LPGP LPG +PG +PGP +P
Sbjct: 163 QPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPG------IPGPQGSPG 216
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG A G + P + P L G + G +P G + +PG
Sbjct: 217 LPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPG 272
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+P L G + PG +P LPG LPG P + G + P PGP+ G
Sbjct: 273 SPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPT------G 323
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P+ PG P G P LPG P PG A G PG + +P
Sbjct: 324 PAGQKGEPGSDGIPGSAGEKGEPGLPG-RGFPGFPG---AKGDKGSKGEVGFPGLAGSPG 379
Query: 263 LPG 265
+PG
Sbjct: 380 IPG 382
>gi|344253578|gb|EGW09682.1| Collagen alpha-1(IV) chain [Cricetulus griseus]
Length = 1614
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 95/271 (35%), Gaps = 22/271 (8%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D+PGP G P L G S P LPG P PG LPG + G
Sbjct: 750 DMPGPKGDK---GSQGLPGLTGQSGLPGLPGQQGTPGFPG------LPGVKGEMGVMGTP 800
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
P PGP+ P LPG LPG S GP P G LPG + D
Sbjct: 801 GQPGSPGPAGTPGLPGEKGDHGLPGSS------GPRGDPGFKGDKGDVGLPGMPGSMDHV 854
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
S G LPG P +PG P L G A G S P + P
Sbjct: 855 DMGSMKGQKGDQGEKGLPGQKGVPGIPGQQGVPGLRGEKGAKGEKGQSGLPGI----GIP 910
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
PG L G +P G + PG P PGP +P + G +P LPG
Sbjct: 911 GRPGDKGDQGLTGFPGSPGEKGEKGSAGTPG---MPGSPGPKGSPGIIGHPGSPGLPGEK 967
Query: 268 SAPDLPGPSSAPDLPGPSSAPDLPGPSSTVL 298
LPG P + G L G S +
Sbjct: 968 GDKGLPGLDGIPGVKGEVGDRVLRGSMSDCV 998
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 109/421 (25%), Positives = 138/421 (32%), Gaps = 42/421 (9%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPG 76
V P +P PGP+ P LPG LPG P P G LPG + D
Sbjct: 796 VMGTPGQPGSPGPAGTPGLPGEKGDHGLPGSSGPRGDPGFKGDKGDVGLPGMPGSMDHVD 855
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
S G LPG P +PG P L G A G S P + P
Sbjct: 856 MGSMKGQKGDQGEKGLPGQKGVPGIPGQQGVPGLRGEKGAKGEKGQSGLPGI----GIPG 911
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
PG L G +P G + PG P PGP +P + G +P LPG
Sbjct: 912 RPGDKGDQGLTGFPGSPGEKGEKGSAGTPG---MPGSPGPKGSPGIIGHPGSPGLPGEKG 968
Query: 197 APDLPGPSSAPDLPGPSSAPDLPG--------PSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
LPG P + G L G P P PGP GP+ PG
Sbjct: 969 DKGLPGLDGIPGVKGEVGDRVLRGSMSDCVFSPQGLPGTPGPI------GPAGQKGEPGS 1022
Query: 249 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQ 308
P G P S P + PD + P L S T+L G G
Sbjct: 1023 DGIPGSAGEKGEPG----GSCSCFPLRACTPDRA-STERPLL--CSLTLLNHSCGHKGWD 1075
Query: 309 K--SPKGLEPKPAQISFVLNIFANFHQTLRFLHFSCTSLVVTRATVVKLPLYILTVEDDT 366
+ + LEPK ++ S+VL L L L T V L + D
Sbjct: 1076 RLGVQEFLEPKASKDSWVLRALKVNPAYLAPLVILWRGLKETEDLRVNLAFQ--GIRDLW 1133
Query: 367 VILLFIETF-------IQLPQQAYTTNSFAPMDPSKDDTVILLFIKTCIQLPQQAYTTNS 419
+ +E+ IQ+ Q+ SK +L I L + Y N+
Sbjct: 1134 GLQGSLESTGRKVTREIQVGQELLGLQVLRETQDSKACRKLLQLIVFLNLLYRNHYKRNA 1193
Query: 420 F 420
Sbjct: 1194 I 1194
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 100/328 (30%), Gaps = 73/328 (22%)
Query: 34 SAPDLPGPSSAPDLPGPSSAPDLPGPSSA-----------------PDLPGPS---SAPD 73
+P PGP PG P +PG A LPG + +P
Sbjct: 568 GSPGFPGPQGDRGFPGTPGRPGIPGEKGAVGQPGIGFPGPPGPKGVDGLPGDTGLPGSPG 627
Query: 74 LPGPSSAPDLPGPSSAP-----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 128
PG + P PGP LPG P LPG P G P PG
Sbjct: 628 RPGFNGLPGNPGPQGQKGEPGIGLPGLKGQPGLPGIPGTPGEKGNIGGPGFPGEHGIVGP 687
Query: 129 PGPSSAPDLPGP--------------------------------SSAPDLPGPSSAPDLP 156
PG PGP S P + G P P
Sbjct: 688 PGLQGIRGDPGPPGVQGPAGPPGVPGVGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFP 747
Query: 157 GPSSAPDLPGPS------SAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAP 207
G D+PGP P L G S P LPG P LPG + G P
Sbjct: 748 G----LDMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGFPGLPGVKGEMGVMGTPGQP 803
Query: 208 DLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
PGP+ P LPG LP GP P G LPG + D S
Sbjct: 804 GSPGPAGTPGLPGEKGDHGLPGSSGPRGDPGFKGDKGDVGLPGMPGSMDHVDMGSMKGQK 863
Query: 265 GPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G LPG P +PG P L G
Sbjct: 864 GDQGEKGLPGQKGVPGIPGQQGVPGLRG 891
>gi|281342749|gb|EFB18333.1| hypothetical protein PANDA_015151 [Ailuropoda melanoleuca]
Length = 1633
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 112/294 (38%), Gaps = 44/294 (14%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
LPG PG LPG P LPG + +PG LPG AP PGP
Sbjct: 570 GLPGSPGPRGFPGDQGINGLPGQQGLPGLPGITLPCIIPGSYGPSGLPG---APGFPGPK 626
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
A LPG P L G P PG P+LPG PGP LPG P LP
Sbjct: 627 GAHGLPGTPGQPGLRGNKGEPGSPGSVHLPELPG------FPGPRGEKGLPG---FPGLP 677
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAP--------DLPGPSSAPDLPGPSSAP---DLPGPSS 196
G LPG +P LPG AP PG LPG P LPGP
Sbjct: 678 GKDG---LPGKLGSPGLPGSKGAPGDIFGAENGAPGEQGLQGLPGDRGVPGDSGLPGPKG 734
Query: 197 APDL------PGPSSAPDLPGPSSAPDLPGP------SSAPDLPGPSSAPDLPGPSSAP- 243
G +P PG P PGP P LPG AP PGPS P
Sbjct: 735 LLGKSGLLGPKGEQGSPGTPGHMGQPGSPGPDGLFGVKGKPGLPG---APGFPGPSGHPG 791
Query: 244 --DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
+ G + AP G P L G +P L G + LPG + P LPGP
Sbjct: 792 KKGVRGEAGAPSSAGKRGLPGLKGLPGSPGLVGFLGSSGLPGNTGLPGLPGPKG 845
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 110/324 (33%), Positives = 130/324 (40%), Gaps = 44/324 (13%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS + P P PGP A LPG P L G P PG P+LPG P
Sbjct: 609 GSYGPSGL---PGAPGFPGPKGAHGLPGTPGQPGLRGNKGEPGSPGSVHLPELPGFPGPR 665
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDL 128
LPG P LPG LPG +P LPG AP D+ G + PG L
Sbjct: 666 GEKGLPG---FPGLPGKDG---LPGKLGSPGLPGSKGAPGDIFGAENG--APGEQGLQGL 717
Query: 129 PGPSSAP---DLPGPSSAPDL------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
PG P LPGP G +P PG P PGP L G
Sbjct: 718 PGDRGVPGDSGLPGPKGLLGKSGLLGPKGEQGSPGTPGHMGQPGSPGPDG---LFGVKGK 774
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
P LPG AP PGPS P G + G + AP G P L G +P L G
Sbjct: 775 PGLPG---APGFPGPSGHPGKKG------VRGEAGAPSSAGKRGLPGLKGLPGSPGLVGF 825
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLG 299
+ LPG + P LPGP G + P +PG P +PG S + G + V
Sbjct: 826 LGSSGLPGNTGLPGLPGPKGEKGSFGLAGFPGMPG---LPGIPGASGLKGISGSTGRV-- 880
Query: 300 SYLGEAG--HQKSPKGLEPKPAQI 321
G+AG +K +G +P PA I
Sbjct: 881 GPFGQAGSAGEKGDRG-DPGPAGI 903
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 93/254 (36%), Gaps = 49/254 (19%)
Query: 49 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 108
GPS AP L GP P GP SS +PG P GP PG + AP
Sbjct: 473 GPSGAPGLFGP---PGHAGPKGEKGEQTLSSGSGVPGEQGDP---GPQGL---PGETGAP 523
Query: 109 --------------------DLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDL 146
PG P LPG S P P P PGP
Sbjct: 524 GKDGIPGLPGLPGLPGDGGQGFPGEKGLPGLPGEKGHSGPTGPPGIGLPGSPGPRG---F 580
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
PG LPG P LPG + +PG LPG AP PGP A LPG
Sbjct: 581 PGDQGINGLPGQQGLPGLPGITLPCIIPGSYGPSGLPG---APGFPGPKGAHGLPGTPGQ 637
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
P L G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 638 PGLRGNKGEPGSPGSVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGK 685
Query: 267 SSAPDLPGPSSAPD 280
+P LPG AP
Sbjct: 686 LGSPGLPGSKGAPG 699
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 51/132 (38%), Gaps = 6/132 (4%)
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G P LPGP L G P G + PG + P + G A LPGP
Sbjct: 239 GEKGIPGLPGPRGPMGLEGLQGPPGSQGKKGSSGFPGLNGFPGIKGEQGAIGLPGPDVFI 298
Query: 235 DLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
D G S P PG P L G LPGPS P LP AP GP P L G
Sbjct: 299 DTDGAVISGYPGDPGMPGLPGLKGDEGIQGLPGPSGVPGLPALPGAPGALGPQGVPGLKG 358
Query: 293 ----PSSTVLGS 300
P T +G+
Sbjct: 359 DQGNPGRTTVGT 370
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 98/360 (27%), Positives = 114/360 (31%), Gaps = 70/360 (19%)
Query: 4 PFDKHVFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 63
P K V EA PS+ +R L P L G +P L G + LPG + P LPGP
Sbjct: 790 PGKKGVRGEAG-APSSAGKRGL-PGLKGLPGSPGLVGFLGSSGLPGNTGLPGLPGPKGEK 847
Query: 64 D---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--- 117
L G P LPG A L G S + GP G PGP+ P
Sbjct: 848 GSFGLAGFPGMPGLPGIPGASGLKGISGSTGRVGPFGQAGSAGEKGDRGDPGPAGIPSPR 907
Query: 118 ---------------------DLPGP----------------------SSAPDLPGPSSA 134
PGP S+ L G +
Sbjct: 908 PPMLNLRFKGDKGSRGSAGLDGFPGPRGDKGQAGPPGPPGLPGAPGFPSTIKGLIGRAGL 967
Query: 135 PDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL--------- 182
P G P L PG + P +PG S + L + AP LPG S P
Sbjct: 968 PGSTGQRGLPGLKGSPGITGFPGIPGESGSQGL---NGAPGLPGTSGLPGSKGDQGQTLG 1024
Query: 183 ----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
PGP P G G PG G S PG P + G
Sbjct: 1025 ISGSPGPKGQPGESGFKGVKGTDGLVGDVGFPGSKGEDGNVGISGDVGFPGSPGLPGIAG 1084
Query: 239 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVL 298
P PG P GP + L G P LPG LPG PGPS T +
Sbjct: 1085 MRGNPGFPGSPGHPGATGPLGSSGLMGTKGFPGLPGLHGLNGLPGTKGTHGTPGPSITGV 1144
>gi|397524284|ref|XP_003832130.1| PREDICTED: collagen alpha-1(IV) chain [Pan paniscus]
gi|410298984|gb|JAA28092.1| collagen, type IV, alpha 1 [Pan troglodytes]
gi|410339999|gb|JAA38946.1| collagen, type IV, alpha 1 [Pan troglodytes]
Length = 1669
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 114/303 (37%), Gaps = 24/303 (7%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPS 69
A LP + L P LPG AP +PG P S ++ G P PGP AP LPG
Sbjct: 847 AQGLPGITGQSGL-PGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEK 905
Query: 70 SAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
PG P P L G LPG + D S G GP
Sbjct: 906 GDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEK 965
Query: 127 DLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPS 177
G P +PG + P PGP P + G AP LPGP + P PG
Sbjct: 966 GSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEK 1025
Query: 178 SAPDLPGPSSAPDLPGPSSAPDLPGPSS-----APDLPGPSSAPDLPGPSSAPDLPGPSS 232
P +PGP +P LPG A G + P L G + G +P G
Sbjct: 1026 GVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLRGEKGDQGIAGFPGSPGEKGEKG 1085
Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG +P L G + PG +P LPG LPG P + G + P PG
Sbjct: 1086 TIGIPGMPGSPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPG 1142
Query: 293 PSS 295
P+
Sbjct: 1143 PTG 1145
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 102/282 (36%), Gaps = 25/282 (8%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D+PGP G P + G S P LPG AP +PG PG + G
Sbjct: 837 DMPGPKGDK---GAQGLPGITGQSGLPGLPGQQGAPGIPG------FPGSKGEMGVMGTP 887
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
P PGP AP LPG PG P P L G LPG + D S
Sbjct: 888 GQPGSPGPVGAPGLPGEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMK 947
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLP 201
G GP G P +PG + P PGP P + G AP LP
Sbjct: 948 GQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLP 1007
Query: 202 GPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
GP + P PG P +PGP +P LPG A G + P + P L
Sbjct: 1008 GPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLR 1063
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
G + G +P G +PG +P L G +V
Sbjct: 1064 GEKGDQGIAGFPGSPGEKGEKGTIGIPGMPGSPGLKGSPGSV 1105
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 93/243 (38%), Gaps = 26/243 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PGP P + G AP LPGP LPG +PG +PGP +P
Sbjct: 985 QPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPG------IPGPQGSPG 1038
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG A G + P + P L G + G +P G +PG
Sbjct: 1039 LPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGIAGFPGSPGEKGEKGTIGIPGMPG 1094
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+P L G + PG +P LPG LPG P + G + P PGP+ G
Sbjct: 1095 SPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPT------G 1145
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P+ PG P G P LPG P PG A G PG + +P
Sbjct: 1146 PAGQKGEPGSDGIPGSAGEKGEPGLPG-RGFPGFPG---AKGDKGSKGEVGFPGLAGSPG 1201
Query: 263 LPG 265
+PG
Sbjct: 1202 IPG 1204
>gi|47216921|emb|CAG02093.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1399
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 105/285 (36%), Gaps = 14/285 (4%)
Query: 21 TERPLEPDLPGPSSAPDLPGPSSAPDLP-GPSSAPD---LPGPSSAPDLPGPSSAPDLPG 76
T R EP LPG PG S PD GP+ AP PGP A G PG
Sbjct: 477 TGRTGEPGLPGAKGMTGSPG-SPGPDGKMGPAGAPGQDGRPGPPGAVGARGQPGVMGFPG 535
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
P A PG + GPS A PG GP+ L G G +
Sbjct: 536 PKGAAGEPGKTGERGAMGPSGAVGAPGKDGEVGAQGPAGPAGLQGERGEQGPAGATGFQG 595
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
LPGP A G +PG + P G PG AP GP+ A PGP+
Sbjct: 596 LPGPQGAVGETGKPGEQGVPGEAGLPGPAGSRGDRGFPGERGAPGAAGPTGARGSPGPAG 655
Query: 197 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
G + AP PG P L G P G + P L G G AP G
Sbjct: 656 NDGAKGDAGAPGNPGAQGPPGLQG---MPGERGAAGLPGLRGDRGDQGAKGGDGAPGKDG 712
Query: 257 P---SSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSS 295
P + A LPGP+ A PGP+ A GP AP G S
Sbjct: 713 PRGMTGAIGLPGPAGASGDKGEPGPAGAVGPAGPRGAPGERGESG 757
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 102/283 (36%), Gaps = 17/283 (6%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPD---LPGP 86
G AP + GP A G + P LPG PG S PD GP+ AP PGP
Sbjct: 460 GERGAPGVAGPKGATGETGRTGEPGLPGAKGMTGSPG-SPGPDGKMGPAGAPGQDGRPGP 518
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
A G PGP A PG + GPS A PG GP+ L
Sbjct: 519 PGAVGARGQPGVMGFPGPKGAAGEPGKTGERGAMGPSGAVGAPGKDGEVGAQGPAGPAGL 578
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
G G + LPGP A G +PG + P G PG A
Sbjct: 579 QGERGEQGPAGATGFQGLPGPQGAVGETGKPGEQGVPGEAGLPGPAGSRGDRGFPGERGA 638
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDL 263
P GP+ A PGP+ G + AP PG P L PG A LPG
Sbjct: 639 PGAAGPTGARGSPGPAGNDGAKGDAGAPGNPGAQGPPGLQGMPGERGAAGLPGLRGDRGD 698
Query: 264 PGPSSAPDLPGP------SSAPDLPGPSSA---PDLPGPSSTV 297
G PG + A LPGP+ A PGP+ V
Sbjct: 699 QGAKGGDGAPGKDGPRGMTGAIGLPGPAGASGDKGEPGPAGAV 741
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 91/248 (36%), Gaps = 11/248 (4%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSA 89
GP+ G AP + GP A G + P LPG PG S PD GP+ A
Sbjct: 451 GPAGPKGATGERGAPGVAGPKGATGETGRTGEPGLPGAKGMTGSPG-SPGPDGKMGPAGA 509
Query: 90 PD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
P PGP A G PGP A PG + GPS A PG
Sbjct: 510 PGQDGRPGPPGAVGARGQPGVMGFPGPKGAAGEPGKTGERGAMGPSGAVGAPGKDGEVGA 569
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
GP+ L G G + LPGP A G +PG + P G
Sbjct: 570 QGPAGPAGLQGERGEQGPAGATGFQGLPGPQGAVGETGKPGEQGVPGEAGLPGPAGSRGD 629
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
PG AP GP+ A PGP+ G + AP PG P L G +PG
Sbjct: 630 RGFPGERGAPGAAGPTGARGSPGPAGNDGAKGDAGAPGNPGAQGPPGLQG------MPGE 683
Query: 267 SSAPDLPG 274
A LPG
Sbjct: 684 RGAAGLPG 691
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 91/248 (36%), Gaps = 11/248 (4%)
Query: 49 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSA 107
GP+ G AP + GP A G + P LPG PG S PD GP+ A
Sbjct: 451 GPAGPKGATGERGAPGVAGPKGATGETGRTGEPGLPGAKGMTGSPG-SPGPDGKMGPAGA 509
Query: 108 PD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 164
P PGP A G PGP A PG + GPS A PG
Sbjct: 510 PGQDGRPGPPGAVGARGQPGVMGFPGPKGAAGEPGKTGERGAMGPSGAVGAPGKDGEVGA 569
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
GP+ L G G + LPGP A G +PG + P G
Sbjct: 570 QGPAGPAGLQGERGEQGPAGATGFQGLPGPQGAVGETGKPGEQGVPGEAGLPGPAGSRGD 629
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
PG AP GP+ A PGP+ G + AP PG P L G +PG
Sbjct: 630 RGFPGERGAPGAAGPTGARGSPGPAGNDGAKGDAGAPGNPGAQGPPGLQG------MPGE 683
Query: 285 SSAPDLPG 292
A LPG
Sbjct: 684 RGAAGLPG 691
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 99/282 (35%), Gaps = 20/282 (7%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-------------- 75
PG P + G + A + GP G A PGP+ A P
Sbjct: 390 PGAKGEPGVKGEAGAAGVQGPPGPSGEEGKRGARGEPGPAGARGAPGERGGPGGRGFPGA 449
Query: 76 -GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSS 133
GP+ G AP + GP A G + P LPG PG S PD GP+
Sbjct: 450 DGPAGPKGATGERGAPGVAGPKGATGETGRTGEPGLPGAKGMTGSPG-SPGPDGKMGPAG 508
Query: 134 AP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
AP PGP A G PGP A PG + GPS A PG
Sbjct: 509 APGQDGRPGPPGAVGARGQPGVMGFPGPKGAAGEPGKTGERGAMGPSGAVGAPGKDGEVG 568
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
GP+ L G G + LPGP A G +PG + P G
Sbjct: 569 AQGPAGPAGLQGERGEQGPAGATGFQGLPGPQGAVGETGKPGEQGVPGEAGLPGPAGSRG 628
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
PG AP GP+ A PGP+ G + AP PG
Sbjct: 629 DRGFPGERGAPGAAGPTGARGSPGPAGNDGAKGDAGAPGNPG 670
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 72/215 (33%), Gaps = 29/215 (13%)
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-------------- 156
PG P + G + A + GP G A PGP+ A P
Sbjct: 390 PGAKGEPGVKGEAGAAGVQGPPGPSGEEGKRGARGEPGPAGARGAPGERGGPGGRGFPGA 449
Query: 157 -GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSS 214
GP+ G AP + GP A G + P LPG PG S PD GP+
Sbjct: 450 DGPAGPKGATGERGAPGVAGPKGATGETGRTGEPGLPGAKGMTGSPG-SPGPDGKMGPAG 508
Query: 215 APD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 271
AP PGP A G PGP A PG + GPS A PG
Sbjct: 509 APGQDGRPGPPGAVGARGQPGVMGFPGPKGAAGEPGKTGERGAMGPSGAVGAPGKDGEVG 568
Query: 272 LPGPSSAPDLPGPSSA---------PDLPGPSSTV 297
GP+ L G LPGP V
Sbjct: 569 AQGPAGPAGLQGERGEQGPAGATGFQGLPGPQGAV 603
>gi|403273052|ref|XP_003928340.1| PREDICTED: collagen alpha-1(IV) chain [Saimiri boliviensis
boliviensis]
Length = 1731
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 116/303 (38%), Gaps = 24/303 (7%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPS 69
A LP + L P LPG P +PG P S ++ G P PGP +P LPG
Sbjct: 909 AQGLPGITGQSGL-PGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPVGSPGLPGEK 967
Query: 70 SAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
PG P P L G LPG + D + G GP
Sbjct: 968 GDHGFPGSSGPRGDPGLKGDKGDAGLPGKPGSMDKVDMENMKGEKGDQGEKGQIGPIGEK 1027
Query: 127 DLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPS 177
G +P +PG + P PGP P + G +P LPGP + P PG
Sbjct: 1028 GSRGDPGSPGVPGKDGQAGQPGQPGPKGDPGISGIPGSPGLPGPKGSVGGMGLPGTPGEK 1087
Query: 178 SAPDLPGPSSAPDLPGPSSAPDLPGPS-----SAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
P +PGP AP LPG A G + P LPG + G +P G
Sbjct: 1088 GVPGIPGPQGAPGLPGEKGAKGEKGQAGPPGIGIPGLPGVKGDQGIAGFPGSPGEKGEKG 1147
Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+ +PG +P L G + PG +P LPG LPG P + G + P PG
Sbjct: 1148 SIGIPGVPGSPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPG 1204
Query: 293 PSS 295
P+
Sbjct: 1205 PTG 1207
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 95/241 (39%), Gaps = 23/241 (9%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLP 84
G + P PGP P + G +P LPGP + P PG P +PGP AP LP
Sbjct: 1043 GQAGQPGQPGPKGDPGISGIPGSPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGAPGLP 1102
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
G A G + P + P LPG + G +P G + +PG +P
Sbjct: 1103 GEKGAKGEKGQAGPPGI----GIPGLPGVKGDQGIAGFPGSPGEKGEKGSIGIPGVPGSP 1158
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
L G + PG +P LPG LPG P + G + P PGP+ GP+
Sbjct: 1159 GLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPT------GPA 1209
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
PG P G P LPG P PG A G PG + +P +P
Sbjct: 1210 GQKGEPGSDGIPGSAGEKGEPGLPG-RGFPGFPG---AKGDKGSKGEVGFPGLAGSPGIP 1265
Query: 265 G 265
G
Sbjct: 1266 G 1266
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 93/255 (36%), Gaps = 28/255 (10%)
Query: 45 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 104
P + G P PG D+PGP G P + G S P LPG P +PG
Sbjct: 884 PGIKGEKGFPGFPGL----DMPGPKGDK---GAQGLPGITGQSGLPGLPGQQGTPGVPG- 935
Query: 105 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 164
PG + G P PGP +P LPG PG S GP P L
Sbjct: 936 -----FPGSKGEMGVMGTPGQPGSPGPVGSPGLPGEKGDHGFPGSS------GPRGDPGL 984
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--- 221
G LPG + D + G GP G +P +PG
Sbjct: 985 KGDKGDAGLPGKPGSMDKVDMENMKGEKGDQGEKGQIGPIGEKGSRGDPGSPGVPGKDGQ 1044
Query: 222 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGP 275
+ P PGP P + G +P LPGP + P PG P +PGP AP LPG
Sbjct: 1045 AGQPGQPGPKGDPGISGIPGSPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGAPGLPGE 1104
Query: 276 SSAPDLPGPSSAPDL 290
A G + P +
Sbjct: 1105 KGAKGEKGQAGPPGI 1119
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 78/216 (36%), Gaps = 22/216 (10%)
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
P + G P PG D+PGP G P + G S P LPG P +PG
Sbjct: 884 PGIKGEKGFPGFPGL----DMPGPKGDK---GAQGLPGITGQSGLPGLPGQQGTPGVPG- 935
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
PG + G P PGP +P LPG PG S GP P L
Sbjct: 936 -----FPGSKGEMGVMGTPGQPGSPGPVGSPGLPGEKGDHGFPGSS------GPRGDPGL 984
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--- 266
G LPG + D + G GP G +P +PG
Sbjct: 985 KGDKGDAGLPGKPGSMDKVDMENMKGEKGDQGEKGQIGPIGEKGSRGDPGSPGVPGKDGQ 1044
Query: 267 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL 302
+ P PGP P + G +P LPGP +V G L
Sbjct: 1045 AGQPGQPGPKGDPGISGIPGSPGLPGPKGSVGGMGL 1080
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 75/198 (37%), Gaps = 40/198 (20%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSA--------------PDLPGPSS--------- 52
LP T E+ + P +PGP AP LPG A P LPG
Sbjct: 1080 LPGTPGEKGV-PGIPGPQGAPGLPGEKGAKGEKGQAGPPGIGIPGLPGVKGDQGIAGFPG 1138
Query: 53 APDLPGPSSAPDLPGPSSAPDLPG-PSS-----APDLPGPSSAPDLPGPSSAPDLPGPSS 106
+P G + +PG +P L G P S +P LPG LPG P + G +
Sbjct: 1139 SPGEKGEKGSIGIPGVPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAG 1198
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
P PGP+ GP+ PG P G P LPG P PG A G
Sbjct: 1199 LPGTPGPT------GPAGQKGEPGSDGIPGSAGEKGEPGLPG-RGFPGFPG---AKGDKG 1248
Query: 167 PSSAPDLPGPSSAPDLPG 184
PG + +P +PG
Sbjct: 1249 SKGEVGFPGLAGSPGIPG 1266
>gi|350590049|ref|XP_003131139.3| PREDICTED: collagen alpha-1(IV) chain-like [Sus scrofa]
Length = 1665
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 100/268 (37%), Gaps = 25/268 (9%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D+PGP L G P L G S P LPG P LPG PGP + G
Sbjct: 833 DMPGPKGDKGLQG---LPGLTGQSGLPGLPGQQGTPGLPG------FPGPKGEMGVMGTP 883
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
P PGP+ AP LPG PG P P G LPG + D S
Sbjct: 884 GQPGSPGPAGAPGLPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMK 943
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLP 201
G + GP+ G AP +PG + P PGP P + G AP LP
Sbjct: 944 GQKGDQGEKEKTGPTGDKGSRGDPGAPGVPGKDGQAGHPGHPGPKGDPGISGTPGAPGLP 1003
Query: 202 GPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
GP + P PG P +PGP P LPG A G + P + P P
Sbjct: 1004 GPKGSVGGMGLPGTPGEKGVPGIPGPQGVPGLPGEKGAKGEKGQAGLPGI----GIPGRP 1059
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
G L G +P G + +PG
Sbjct: 1060 GDKGDQGLAGFPGSPGEKGEKGSSGIPG 1087
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 104/276 (37%), Gaps = 22/276 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
V P +P PGP+ AP LPG PG S GP P G LPG
Sbjct: 879 VMGTPGQPGSPGPAGAPGLPGEKGDHGFPGSS------GPRGDPGFKGDKGDVGLPGKPG 932
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPD 136
+ D S G + GP+ G AP +PG + P PGP P
Sbjct: 933 SMDKVDMGSMKGQKGDQGEKEKTGPTGDKGSRGDPGAPGVPGKDGQAGHPGHPGPKGDPG 992
Query: 137 LPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
+ G AP LPGP + P PG P +PGP P LPG A G + P
Sbjct: 993 ISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGVPGLPGEKGAKGEKGQAGLPG 1052
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
+ P PG L G +P G + +PG P PGP +P G
Sbjct: 1053 I----GIPGRPGDKGDQGLAGFPGSPGEKGEKGSSGIPG---LPGSPGPKGSPGSVGYPG 1105
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
+P PG LPG AP G + P PGP+
Sbjct: 1106 SPGSPGEKGDKGLPGLDGAPGSKGEAGLPGKPGPTG 1141
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 108/316 (34%), Gaps = 64/316 (20%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPG P LPG P G P +PG A PG PGP P L GP
Sbjct: 734 LPGLKGLPGLPGTPGTPGEKGNIGGPGVPGEHGAIGPPGLQGIRGDPGP---PGLQGPKG 790
Query: 89 AP----------------------------------------DLPGPSSAPDLPGPSSAP 108
AP D+PGP L G P
Sbjct: 791 APGVPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMPGPKGDKGLQG---LP 847
Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 168
L G S P LPG P LPG PGP + G P PGP+ AP LPG
Sbjct: 848 GLTGQSGLPGLPGQQGTPGLPG------FPGPKGEMGVMGTPGQPGSPGPAGAPGLPGEK 901
Query: 169 SAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P GP P G LPG + D S G + GP+
Sbjct: 902 GDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKEKTGPTGDK 961
Query: 226 DLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPS 276
G AP +PG + P PGP P + G AP LPGP + P PG
Sbjct: 962 GSRGDPGAPGVPGKDGQAGHPGHPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEK 1021
Query: 277 SAPDLPGPSSAPDLPG 292
P +PGP P LPG
Sbjct: 1022 GVPGIPGPQGVPGLPG 1037
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 102/335 (30%), Positives = 112/335 (33%), Gaps = 80/335 (23%)
Query: 29 LPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSA-----------------PDL 65
LPGP A LPG P PG P LPG A L
Sbjct: 640 LPGPPGAEGLPGSPGFQGPQGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPKGVDGL 699
Query: 66 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--DLPGPSSAPDLPGPSSAPDLPGPS 123
PG + P PG LPG P PG P LPG P LPG P G
Sbjct: 700 PGDAGPPGNPGRQGFNGLPG---NPGAPGQKGEPGIGLPGLKGLPGLPGTPGTPGEKGNI 756
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS------------------------ 159
P +PG A PG PGP P L GP
Sbjct: 757 GGPGVPGEHGAIGPPGLQGIRGDPGP---PGLQGPKGAPGVPGIGPPGAMGPPGGQGPPG 813
Query: 160 --SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
P + G P PG D+PGP L G P L G S P LPG P
Sbjct: 814 SSGPPGVKGEKGFPGFPG----LDMPGPKGDKGLQG---LPGLTGQSGLPGLPGQQGTPG 866
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
LPG PGP + G P PGP+ AP LPG PG S GP
Sbjct: 867 LPG------FPGPKGEMGVMGTPGQPGSPGPAGAPGLPGEKGDHGFPGSS------GPRG 914
Query: 278 APDLPGPSSAPDLPGPSSTV----LGSYLGEAGHQ 308
P G LPG ++ +GS G+ G Q
Sbjct: 915 DPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQ 949
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 106/385 (27%), Positives = 117/385 (30%), Gaps = 131/385 (34%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAP----------------------------- 54
P +P +PG + +P G P LPGP +P
Sbjct: 545 PGQPGMPGRAGSP---GRDGHPGLPGPKGSPGSAGLKGERGPPGGVGFPGSRGDIGPPGP 601
Query: 55 ---------------DLPGPSSAPDLPGPSSAPD----LPGPSSAPDLPGPSSAPDLPGP 95
PG AP PGP LPGP A LPG +P GP
Sbjct: 602 PGFGPIGPIGDKGQAGFPGNPGAPGQPGPKGEAGKVVPLPGPPGAEGLPG---SPGFQGP 658
Query: 96 SSAPDLPGPSSAPDLPGPSSA-----------------PDLPGPSSAPDLPGPSSAPDLP 138
PG P LPG A LPG + P PG LP
Sbjct: 659 QGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPKGVDGLPGDAGPPGNPGRQGFNGLP 718
Query: 139 GPSSAP--------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
G AP LPG P LPG P G P +PG A PG
Sbjct: 719 GNPGAPGQKGEPGIGLPGLKGLPGLPGTPGTPGEKGNIGGPGVPGEHGAIGPPGLQGIRG 778
Query: 191 LPGPSSAPDLPGPSSAP----------------------------------------DLP 210
PGP P L GP AP D+P
Sbjct: 779 DPGP---PGLQGPKGAPGVPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMP 835
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
GP L G P L G S P LPG P LPG PGP + G P
Sbjct: 836 GPKGDKGLQG---LPGLTGQSGLPGLPGQQGTPGLPG------FPGPKGEMGVMGTPGQP 886
Query: 271 DLPGPSSAPDLPGPSSAPDLPGPSS 295
PGP+ AP LPG PG S
Sbjct: 887 GSPGPAGAPGLPGEKGDHGFPGSSG 911
>gi|441614317|ref|XP_003270227.2| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(IV) chain [Nomascus
leucogenys]
Length = 1669
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 112/302 (37%), Gaps = 49/302 (16%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 83
P + G S P LPG AP +PG P S ++ G P PGP AP LPG
Sbjct: 851 PGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDHGF 910
Query: 84 PG---PSSAPDLPGPSSAPDLPGPSSAPDL------------------------------ 110
PG P P L G LPG + D
Sbjct: 911 PGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSRGD 970
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
PG P G + P PGP P + G AP LPGP + P PG P +
Sbjct: 971 PGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 1030
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PGP +P LPG A G + P + P LPG + G +P G +
Sbjct: 1031 PGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLPGEKGDQGIVGFPGSPGEKGEKGS 1086
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
+PG +P L G + PG +P LPG LPG P + G + P PGP
Sbjct: 1087 IGIPGMPGSPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGP 1143
Query: 285 SS 286
+
Sbjct: 1144 TG 1145
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 104/282 (36%), Gaps = 25/282 (8%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D+PGP G P + G S P LPG AP +PG PG + G
Sbjct: 837 DMPGPKGDK---GAQGLPGITGQSGLPGLPGQQGAPGIPG------FPGSKGEMGVMGTP 887
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
P PGP AP LPG PG P P L G LPG + D S
Sbjct: 888 GQPGSPGPVGAPGLPGEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMK 947
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLP 201
G GP G P +PG + P PGP P + G AP LP
Sbjct: 948 GQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLP 1007
Query: 202 GPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
GP + P PG P +PGP +P LPG A G + P + P LP
Sbjct: 1008 GPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLP 1063
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
G + G +P G + +PG +P L G +V
Sbjct: 1064 GEKGDQGIVGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSV 1105
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 95/243 (39%), Gaps = 26/243 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PGP P + G AP LPGP LPG +PG +PGP +P
Sbjct: 985 QPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPG------IPGPQGSPG 1038
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG A G + P + P LPG + G +P G + +PG
Sbjct: 1039 LPGDKGAKGEKGQAGPPGI----GIPGLPGEKGDQGIVGFPGSPGEKGEKGSIGIPGMPG 1094
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+P L G + PG +P LPG LPG P + G + P PGP+ G
Sbjct: 1095 SPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPT------G 1145
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P+ PG P G P LPG P PG A G PG + +P
Sbjct: 1146 PAGQKGEPGSDGIPGSAGEKGEPGLPG-RGFPGFPG---AKGDKGSKGEVGFPGLAGSPG 1201
Query: 263 LPG 265
+PG
Sbjct: 1202 IPG 1204
>gi|194222045|ref|XP_001496580.2| PREDICTED: collagen alpha-1(IV) chain [Equus caballus]
Length = 1712
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 104/302 (34%), Gaps = 49/302 (16%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P L G S P LPG P LPG P + G P PGP+ P LPG
Sbjct: 894 PGLTGQSGLPGLPGQQGTPGLPGFPGPKGEMGVMGTPGQPGSPGPAGVPGLPGEKGDHGF 953
Query: 84 PG---PSSAPDLPGPSSAPDLPGPSSAPDL------------------------------ 110
PG P P G LPG + D
Sbjct: 954 PGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGEKGDQGEKGQIGPTGDKGSRGD 1013
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
PG P G + P PGP P + G AP LPGP + P PG P +
Sbjct: 1014 PGTPGVPGKDGQAGHPGQPGPKGDPGVGGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 1073
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PGP P LPG A G + P + P PG L G P G +
Sbjct: 1074 PGPQGVPGLPGEKGAKGEKGQAGLPGI----GIPGRPGDKGDQGLAGFPGTPGEKGEKGS 1129
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
+PG P PGP P G +P LPG LPG P + G + P PGP
Sbjct: 1130 AGIPG---MPGSPGPKGLPGSVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPGKPGP 1186
Query: 285 SS 286
S
Sbjct: 1187 SG 1188
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 105/293 (35%), Gaps = 23/293 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPG 76
V P +P PGP+ P LPG PG P P G LPG + D
Sbjct: 926 VMGTPGQPGSPGPAGVPGLPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVD 985
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSS 133
S G GP+ G P +PG + P PGP P + G
Sbjct: 986 MGSMKGEKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGVGGTPG 1045
Query: 134 APDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----- 182
AP LPGP + P PG P +PGP P LPG A G + P +
Sbjct: 1046 APGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGVPGLPGEKGAKGEKGQAGLPGIGIPGR 1105
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
PG L G P G + +PG P PGP P G +P LPG
Sbjct: 1106 PGDKGDQGLAGFPGTPGEKGEKGSAGIPG---MPGSPGPKGLPGSVGYPGSPGLPGEKGD 1162
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P + G + P PGPS PG P G P LPG
Sbjct: 1163 KGLPGLDGIPGIKGEAGLPGKPGPSGPAGQKGEPGSDGIPGSAGEKGEPGLPG 1215
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 106/318 (33%), Gaps = 59/318 (18%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D+PGP G P L G S P LPG P LPG PGP + G
Sbjct: 880 DMPGPKGDK---GTQGLPGLTGQSGLPGLPGQQGTPGLPG------FPGPKGEMGVMGTP 930
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
P PGP+ P LPG PG P P G LPG + D S
Sbjct: 931 GQPGSPGPAGVPGLPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMK 990
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLP 201
G GP+ G P +PG + P PGP P + G AP LP
Sbjct: 991 GEKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGVGGTPGAPGLP 1050
Query: 202 GPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---------- 245
GP + P PG P +PGP P LPG A G + P +
Sbjct: 1051 GPKGSVGGMGLPGTPGEKGVPGIPGPQGVPGLPGEKGAKGEKGQAGLPGIGIPGRPGDKG 1110
Query: 246 ----------------------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
PGP P G +P LPG LPG
Sbjct: 1111 DQGLAGFPGTPGEKGEKGSAGIPGMPGSPGPKGLPGSVGYPGSPGLPGEKGDKGLPGLDG 1170
Query: 278 APDLPGPSSAPDLPGPSS 295
P + G + P PGPS
Sbjct: 1171 IPGIKGEAGLPGKPGPSG 1188
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 89/242 (36%), Gaps = 23/242 (9%)
Query: 66 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 119
PG P G + P PGP P + G AP LPGP + P PG P +
Sbjct: 1014 PGTPGVPGKDGQAGHPGQPGPKGDPGVGGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 1073
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
PGP P LPG A G + P + G P G PG G +
Sbjct: 1074 PGPQGVPGLPGEKGAKGEKGQAGLPGI-GIPGRPGDKGDQGLAGFPGTPGEKGEKGSAGI 1132
Query: 180 PDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
P + PGP P G +P LPG LPG P + G + P PGPS
Sbjct: 1133 PGMPGSPGPKGLPGSVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPGKPGPS----- 1187
Query: 237 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP------DLPGPSSAPDL 290
GP+ PG P G P LPG P PG PG + +P +
Sbjct: 1188 -GPAGQKGEPGSDGIPGSAGEKGEPGLPG-RGFPGFPGTKGEKGSKGDVGFPGLAGSPGI 1245
Query: 291 PG 292
PG
Sbjct: 1246 PG 1247
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 72/197 (36%), Gaps = 18/197 (9%)
Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 168
D+PGP G P L G S P LPG P LPG PGP + G
Sbjct: 880 DMPGPKGDK---GTQGLPGLTGQSGLPGLPGQQGTPGLPG------FPGPKGEMGVMGTP 930
Query: 169 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
P PGP+ P LPG PG S GP P G LPG + D
Sbjct: 931 GQPGSPGPAGVPGLPGEKGDHGFPGSS------GPRGDPGFKGDKGDVGLPGKPGSMDKV 984
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS 285
S G GP+ G P +PG + P PGP P + G
Sbjct: 985 DMGSMKGEKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGVGGTP 1044
Query: 286 SAPDLPGPSSTVLGSYL 302
AP LPGP +V G L
Sbjct: 1045 GAPGLPGPKGSVGGMGL 1061
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 102/347 (29%), Positives = 117/347 (33%), Gaps = 81/347 (23%)
Query: 24 PLEPDLPGPSSAPD----LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
P P LPGP LPGP A LPG +P GP PG P LPG
Sbjct: 669 PGSPGLPGPKGEAGKVVPLPGPPGAEGLPG---SPGFQGPQGDRGFPGTPGRPGLPGEKG 725
Query: 80 A-----------------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LP 120
A LPG P PG LPG +P +PG P LP
Sbjct: 726 AVGQPGIGFPGPPGPKGVDGLPGDVGPPGNPGRQGFSGLPG---SPGVPGQKGEPGIGLP 782
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
G +P +PG P PG + PG GP + G P L GP AP
Sbjct: 783 GLKGSPGIPG---IPGTPGEKGSIGGPGIPGEHGAIGPPGLQGIRGDPGPPGLQGPKGAP 839
Query: 181 D--------------------------LPGPSSAPDLPGPSSAPDLPGPSS---APDLPG 211
+ G P PG D+PGP LPG
Sbjct: 840 GVPGIGPPGVMGPPGGQGPPGSSGPPGVKGEKGFPGFPGL----DMPGPKGDKGTQGLPG 895
Query: 212 PSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
+ P LPG P LPG PGP + G P PGP+ P LPG
Sbjct: 896 LTGQSGLPGLPGQQGTPGLPG------FPGPKGEMGVMGTPGQPGSPGPAGVPGLPGEKG 949
Query: 269 APDLP---GPSSAPDLPGPSSAPDLPGPSSTV----LGSYLGEAGHQ 308
P GP P G LPG ++ +GS GE G Q
Sbjct: 950 DHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGEKGDQ 996
>gi|47213961|emb|CAF94059.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1026
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 97/272 (35%), Gaps = 25/272 (9%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSS 79
R P +PG G P LPG +P PG PG + PG
Sbjct: 193 REGIPGIPGRKGESGFGGLRGFPGLPGRPGSPGFPGGKGEVGDPGRNGFFGGAGYPGQKG 252
Query: 80 APDLPGPSSAPDLPGP--------SSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDL 128
PGP P LP P P +PG S+ P PGP P LPG P L
Sbjct: 253 ERGYPGP---PGLPSPQFPLEFADKGEPGIPGGSALPGFPGPRGDKGLPGLPGRQGLPGL 309
Query: 129 PG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
PG A PG P PG P L G + PG S L G AP LPG
Sbjct: 310 PGFAEQAKGQPGQPGFPGRPGSPGFPGLKGEAGIMGFPGSSG---LRGDDGAPGLPGEPG 366
Query: 188 APDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
PG P ++ P G P +PG + PG + P PG P +
Sbjct: 367 GYGRPGSKGQPGEVYAYPGGPGAKGERGEPGIPGGRNNDGAPGDNGFPGNPG---FPGVK 423
Query: 247 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 278
G S LPG + PGP P PG A
Sbjct: 424 GDSGEGGLPGVTGPIGFPGPKGQPGYPGRRGA 455
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 93/282 (32%), Gaps = 49/282 (17%)
Query: 52 SAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPS--------------------- 87
AP PG +P PG P PGP+ PG S
Sbjct: 135 GAPGNPGTQGSPGFPGRKGERGDPGFPGPAGMKGTPGLSGFPGSPGPAGPPGPPGPGTRE 194
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAP 144
P +PG G P LPG +P PG PG + PG
Sbjct: 195 GIPGIPGRKGESGFGGLRGFPGLPGRPGSPGFPGGKGEVGDPGRNGFFGGAGYPGQKGER 254
Query: 145 DLPGPSSAPDLPGP--------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
PGP P LP P P +PG S+ P PGP LPG LPG
Sbjct: 255 GYPGP---PGLPSPQFPLEFADKGEPGIPGGSALPGFPGPRGDKGLPG------LPGRQG 305
Query: 197 APDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
P LPG A PG P PG P L G + PG S L G AP LP
Sbjct: 306 LPGLPGFAEQAKGQPGQPGFPGRPGSPGFPGLKGEAGIMGFPGSSG---LRGDDGAPGLP 362
Query: 256 GPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPGPSST 296
G PG P ++ P G P +PG +
Sbjct: 363 GEPGGYGRPGSKGQPGEVYAYPGGPGAKGERGEPGIPGGRNN 404
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 102/328 (31%), Gaps = 72/328 (21%)
Query: 31 GPSSAPDLPGPS--------------------------SAPDLPGPSSAPDLPGPSSA-- 62
G S P L G AP PG +P PG
Sbjct: 97 GRSGIPGLKGERGIDGLPGITGPPGPPGEPTGGIPGRPGAPGNPGTQGSPGFPGRKGERG 156
Query: 63 -PDLPGPSSAPDLPGPS---------------------SAPDLPGPSSAPDLPGPSSAPD 100
P PGP+ PG S P +PG G P
Sbjct: 157 DPGFPGPAGMKGTPGLSGFPGSPGPAGPPGPPGPGTREGIPGIPGRKGESGFGGLRGFPG 216
Query: 101 LPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGP-------- 149
LPG +P PG PG + PG PGP P LP P
Sbjct: 217 LPGRPGSPGFPGGKGEVGDPGRNGFFGGAGYPGQKGERGYPGP---PGLPSPQFPLEFAD 273
Query: 150 SSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSS 205
P +PG S+ P PGP P LPG P LPG A PG P PG
Sbjct: 274 KGEPGIPGGSALPGFPGPRGDKGLPGLPGRQGLPGLPGFAEQAKGQPGQPGFPGRPGSPG 333
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLP 264
P L G + PG S L G AP LPG PG P ++ P
Sbjct: 334 FPGLKGEAGIMGFPGSSG---LRGDDGAPGLPGEPGGYGRPGSKGQPGEVYAYPGGPGAK 390
Query: 265 GPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G P +PG + PG + P PG
Sbjct: 391 GERGEPGIPGGRNNDGAPGDNGFPGNPG 418
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 99/269 (36%), Gaps = 36/269 (13%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP P PG +P PG G P PGP+ PG S P PGP+ P
Sbjct: 133 RPGAPGNPGTQGSPGFPGRK------GERGDPGFPGPAGMKGTPGLSGFPGSPGPAGPPG 186
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
PGP + +PG +PG G P LPG +P PG PG +
Sbjct: 187 PPGPGTREGIPG------IPGRKGESGFGGLRGFPGLPGRPGSPGFPGGKGEVGDPGRNG 240
Query: 143 ---APDLPGPSSAPDLPGPSSAPDLPGP--------SSAPDLPGPSSAPDLPGPSSAPDL 191
PG PGP P LP P P +PG S+ P PGP L
Sbjct: 241 FFGGAGYPGQKGERGYPGP---PGLPSPQFPLEFADKGEPGIPGGSALPGFPGPRGDKGL 297
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSS 250
PG LPG P LPG A G P PG +P PG A + P S
Sbjct: 298 PG------LPGRQGLPGLPG--FAEQAKGQPGQPGFPGRPGSPGFPGLKGEAGIMGFPGS 349
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAP 279
+ L G AP LPG PG P
Sbjct: 350 S-GLRGDDGAPGLPGEPGGYGRPGSKGQP 377
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 61/188 (32%), Gaps = 41/188 (21%)
Query: 151 SAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPS--------------------- 186
AP PG +P PG P PGP+ PG S
Sbjct: 135 GAPGNPGTQGSPGFPGRKGERGDPGFPGPAGMKGTPGLSGFPGSPGPAGPPGPPGPGTRE 194
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAP 243
P +PG G P LPG +P PG PG + PG
Sbjct: 195 GIPGIPGRKGESGFGGLRGFPGLPGRPGSPGFPGGKGEVGDPGRNGFFGGAGYPGQKGER 254
Query: 244 DLPGPSSAPDLPGP--------SSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPG 292
PGP P LP P P +PG S+ P PGP P LPG P LPG
Sbjct: 255 GYPGP---PGLPSPQFPLEFADKGEPGIPGGSALPGFPGPRGDKGLPGLPGRQGLPGLPG 311
Query: 293 PSSTVLGS 300
+ G
Sbjct: 312 FAEQAKGQ 319
>gi|410989165|ref|XP_004000835.1| PREDICTED: collagen alpha-6(IV) chain, partial [Felis catus]
Length = 1666
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 112/295 (37%), Gaps = 33/295 (11%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 72
Y PS + P P PGP LPG + P L G PG P+LPG
Sbjct: 636 GSYGPSGL---PGAPGFPGPKGVRGLPGIAGQPGLRGNKGKAGSPGLVHLPELPG----- 687
Query: 73 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGPSSAPDLPGP 131
PGP LPG P LPG LPG +P LPG A D+ G + PG
Sbjct: 688 -FPGPRGEKGLPG---FPGLPGKDG---LPGKIGSPGLPGSKGASGDIYGAENG--APGE 738
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP------ 185
LPG P PG LPG S G P PG P PGP
Sbjct: 739 QGLQGLPGDQGFPGDPGLPGPKGLPGKSGLLGPKGERGRPGTPGHVGQPGSPGPDGRFGI 798
Query: 186 SSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
P LPG AP PGPS P L G + P G P L G +P L G
Sbjct: 799 KGKPGLPG---APGFPGPSGHPGKKGLRGETGPPASAGKRGLPGLKGLPGSPGLIGFLGN 855
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
LPG + P LPGP G P +PG P +PG S + G + V
Sbjct: 856 SGLPGSTGLPGLPGPKGEKGSAGLVGFPGIPG---LPGIPGASGLKGISGSAGKV 907
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 109/294 (37%), Gaps = 44/294 (14%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
LPG LPG LPG P LPG + +PG LPG AP PGP
Sbjct: 597 GLPGSPGPRGLPGDQGIDGLPGKQGLPGLPGVTLPCIIPGSYGPSGLPG---APGFPGPK 653
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
LPG + P L G PG P+LPG PGP LPG P LP
Sbjct: 654 GVRGLPGIAGQPGLRGNKGKAGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLP 704
Query: 148 GPSSAPDLPGPSSAPDLPGPSSA--------PDLPGPSSAPDLPGPSSA---PDLPGPSS 196
G LPG +P LPG A PG LPG P LPGP
Sbjct: 705 GKDG---LPGKIGSPGLPGSKGASGDIYGAENGAPGEQGLQGLPGDQGFPGDPGLPGPKG 761
Query: 197 APDL------PGPSSAPDLPGPSSAPDLPGP------SSAPDLPGPSSAPDLPGPSSAP- 243
P G P PG P PGP P LPG AP PGPS P
Sbjct: 762 LPGKSGLLGPKGERGRPGTPGHVGQPGSPGPDGRFGIKGKPGLPG---APGFPGPSGHPG 818
Query: 244 --DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
L G + P G P L G +P L G LPG + P LPGP
Sbjct: 819 KKGLRGETGPPASAGKRGLPGLKGLPGSPGLIGFLGNSGLPGSTGLPGLPGPKG 872
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 93/268 (34%), Positives = 101/268 (37%), Gaps = 41/268 (15%)
Query: 46 DLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 103
G P LPG S P P + P PGP LPG LPG P LPG
Sbjct: 571 GFQGEKGLPGLPGEKGHSGPAGPPGNGLPGSPGPRG---LPGDQGIDGLPGKQGLPGLPG 627
Query: 104 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 163
+ +PG LPG AP PGP LPG + P L G PG P+
Sbjct: 628 VTLPCIIPGSYGPSGLPG---APGFPGPKGVRGLPGIAGQPGLRGNKGKAGSPGLVHLPE 684
Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGPS 222
LPG PGP LPG P LPG LPG +P LPG A D+ G
Sbjct: 685 LPG------FPGPRGEKGLPG---FPGLPGKDG---LPGKIGSPGLPGSKGASGDIYGAE 732
Query: 223 SAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDL------PGPSSAPDLPGPSSAPDLP 273
+ PG LPG P LPGP P G P PG P P
Sbjct: 733 NG--APGEQGLQGLPGDQGFPGDPGLPGPKGLPGKSGLLGPKGERGRPGTPGHVGQPGSP 790
Query: 274 GP------SSAPDLPGPSSAPDLPGPSS 295
GP P LPG AP PGPS
Sbjct: 791 GPDGRFGIKGKPGLPG---APGFPGPSG 815
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 102/273 (37%), Gaps = 24/273 (8%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGPS 78
+ P P PGP LPG P LPG LPG +P LPG A D+ G
Sbjct: 679 LVHLPELPGFPGPRGEKGLPG---FPGLPGKDG---LPGKIGSPGLPGSKGASGDIYGAE 732
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
+ PG LPG P PG LPG S G P PG P P
Sbjct: 733 NG--APGEQGLQGLPGDQGFPGDPGLPGPKGLPGKSGLLGPKGERGRPGTPGHVGQPGSP 790
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPS 195
GP + G P LPG AP PGPS P L G + P G P L G
Sbjct: 791 GPDGRFGIKG---KPGLPG---APGFPGPSGHPGKKGLRGETGPPASAGKRGLPGLKGLP 844
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
+P L G LPG + P LPGP G P +PG LPG A L
Sbjct: 845 GSPGLIGFLGNSGLPGSTGLPGLPGPKGEKGSAGLVGFPGIPG------LPGIPGASGLK 898
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
G S + GPS G PGP+ P
Sbjct: 899 GISGSAGKVGPSGRAGSAGKKGDRGDPGPAGIP 931
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 107/297 (36%), Gaps = 38/297 (12%)
Query: 37 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 96
LPG PGP GPS P L GP G P L SS +PG
Sbjct: 482 GLPGLKGTRGDPGPGGTQ---GPSGTPGLFGPRGPAGRKGEKGEPTL---SSRSRMPGER 535
Query: 97 SAPD---LPGPSSAP--DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGP 149
P LPG + P D G P LPG S P P
Sbjct: 536 GDPGPQGLPGKTGIPGKDGVPGLPGLPGLPGDGGQGFQGEKGLPGLPGEKGHSGPAGPPG 595
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
+ P PGP LPG LPG P LPG + +PG LPG AP
Sbjct: 596 NGLPGSPGPRG---LPGDQGIDGLPGKQGLPGLPGVTLPCIIPGSYGPSGLPG---APGF 649
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
PGP LPG + P L G PG P+LPG PGP LPG
Sbjct: 650 PGPKGVRGLPGIAGQPGLRGNKGKAGSPGLVHLPELPG------FPGPRGEKGLPG---F 700
Query: 270 PDLPGPSSAPDLPGPSSAPDLP---GPSSTVLGSYLGEAGHQKSPKGLEPKPAQISF 323
P LPG LPG +P LP G S + G+ G G Q GL+ P F
Sbjct: 701 PGLPGKDG---LPGKIGSPGLPGSKGASGDIYGAENGAPGEQ----GLQGLPGDQGF 750
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 92/244 (37%), Gaps = 18/244 (7%)
Query: 39 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG----PSSAPDLPGPSSAPDLPG 94
PG + P +PG S + L + AP LPG A LPG + G PG
Sbjct: 1010 PGITGFPGIPGASGSQGL---NGAPGLPG---ASSLPGSKGDQGQTLGISGSLGLKGQPG 1063
Query: 95 PSSAPDLPGPSS-APDL--PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
S + G A D+ PG G S LPG P + G P LPG +
Sbjct: 1064 ESGFKGVKGKDGLAGDVGFPGSKGEDGKVGISGDVGLPGSPGLPGIAGMRGNPGLPGSAG 1123
Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
P GP AP L G P LPG LPG PGPS +PGP+ P G
Sbjct: 1124 HPGATGPLGAPGLIGTKGFPGLPGLHGLNGLPGTKGTHGTPGPSIT-GVPGPAGLPGPKG 1182
Query: 212 PSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
+P + G P + G PG LPG AP L PS PG P
Sbjct: 1183 EKGSPGIGIGAPGKPGVKGQRGGRGFPGFQGPAGLPG---APGLSLPSVIGGQPGEPGRP 1239
Query: 271 DLPG 274
L G
Sbjct: 1240 GLDG 1243
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 75/193 (38%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G + P PG LPG +P + G P +PG S + L + AP LPG SS
Sbjct: 985 IKGLNGKPGPPGSIGLRGLPGLKGSPGITG---FPGIPGASGSQGL---NGAPGLPGASS 1038
Query: 170 APDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDL--PGPSSAPDLPGPSSAP 225
P G + G PG S + G A D+ PG G S
Sbjct: 1039 LPGSKGDQGQTLGISGSLGLKGQPGESGFKGVKGKDGLAGDVGFPGSKGEDGKVGISGDV 1098
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
LPG P + G P LPG + P GP AP L G P LPG LPG
Sbjct: 1099 GLPGSPGLPGIAGMRGNPGLPGSAGHPGATGPLGAPGLIGTKGFPGLPGLHGLNGLPGTK 1158
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1159 GTHGTPGPSITGV 1171
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 58/149 (38%), Gaps = 5/149 (3%)
Query: 37 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 96
LPG P + G P LPG + P GP AP L G P LPG LPG
Sbjct: 1099 GLPGSPGLPGIAGMRGNPGLPGSAGHPGATGPLGAPGLIGTKGFPGLPGLHGLNGLPGTK 1158
Query: 97 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDL 155
PGPS +PGP+ P G +P + G P + G PG L
Sbjct: 1159 GTHGTPGPSIT-GVPGPAGLPGPKGEKGSPGIGIGAPGKPGVKGQRGGRGFPGFQGPAGL 1217
Query: 156 PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
PG AP L PS PG P L G
Sbjct: 1218 PG---APGLSLPSVIGGQPGEPGRPGLDG 1243
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 55/141 (39%), Gaps = 5/141 (3%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P + G P LPG + P GP AP L G P LPG LPG PGP
Sbjct: 1107 PGIAGMRGNPGLPGSAGHPGATGPLGAPGLIGTKGFPGLPGLHGLNGLPGTKGTHGTPGP 1166
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
S +PGP+ P G +P + G P + G PG LPG AP
Sbjct: 1167 SIT-GVPGPAGLPGPKGEKGSPGIGIGAPGKPGVKGQRGGRGFPGFQGPAGLPG---APG 1222
Query: 146 LPGPSSAPDLPGPSSAPDLPG 166
L PS PG P L G
Sbjct: 1223 LSLPSVIGGQPGEPGRPGLDG 1243
>gi|345788851|ref|XP_003433143.1| PREDICTED: collagen alpha-1(IV) chain [Canis lupus familiaris]
Length = 1617
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 101/276 (36%), Gaps = 22/276 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
V P +P PGP+ P LPG PG S GP P G LPG
Sbjct: 831 VMGTPGQPGSPGPAGLPGLPGEKGDHGFPGSS------GPRGDPGFKGDKGDVGLPGKPG 884
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPD 136
+ D S G GP+ G P +PG + P PGP P
Sbjct: 885 SMDKVDMGSMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPG 944
Query: 137 LPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
+ G AP LPGP + P PG P +PGP P LPG A G + P
Sbjct: 945 IGGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGVPGLPGEKGAKGEKGQAGLPG 1004
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
+ P PG + G +P G + +PG P PGP P G
Sbjct: 1005 I----GIPGRPGDKGEQGISGFPGSPGEKGEKGSAGVPG---IPGSPGPKGLPGTVGYPG 1057
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
+P LPG LPG P + G + P PGP+
Sbjct: 1058 SPGLPGEKGDKGLPGSDGIPGIKGEAGLPGQPGPTG 1093
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 86/236 (36%), Gaps = 24/236 (10%)
Query: 64 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 123
D+PGP G P L G S P LPG P +PG PGP + G
Sbjct: 785 DMPGPKGDK---GSQGLPGLTGQSGLPGLPGQQGTPGVPG------FPGPKGEMGVMGTP 835
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
P PGP+ P LPG PG S GP P G LPG + D
Sbjct: 836 GQPGSPGPAGLPGLPGEKGDHGFPGSS------GPRGDPGFKGDKGDVGLPGKPGSMDKV 889
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS 240
S G GP+ G P +PG + P PGP P + G
Sbjct: 890 DMGSMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGIGGTP 949
Query: 241 SAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
AP LPGP + P PG P +PGP P LPG A G + P +
Sbjct: 950 GAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGVPGLPGEKGAKGEKGQAGLPGI 1005
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 107/316 (33%), Gaps = 56/316 (17%)
Query: 24 PLEPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
P P +PG P LPG P LPG P G P +PG A PG
Sbjct: 670 PGNPGVPGQKGEPGIGLPGLKGLPGLPGIPGTPGEKGNIGGPGVPGEHGAIGPPGLQGIR 729
Query: 82 DLPGPSSAPDLPGPSSAPD--------------------------LPGPSSAPDLPGPSS 115
PGP P L GP AP + G P PG
Sbjct: 730 GDPGP---PGLQGPKGAPGVPGIGPPGAVGPPGGQGPPGSSGPPGVKGEKGFPGFPGL-- 784
Query: 116 APDLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
D+PGP P L G S P LPG P +PG PGP + G
Sbjct: 785 --DMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPG------FPGPKGEMGVMGTPG 836
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
P PGP+ P LPG PG S GP P G LPG + D
Sbjct: 837 QPGSPGPAGLPGLPGEKGDHGFPGSS------GPRGDPGFKGDKGDVGLPGKPGSMDKVD 890
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSS 286
S G GP+ G P +PG + P PGP P + G
Sbjct: 891 MGSMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGIGGTPG 950
Query: 287 APDLPGPSSTVLGSYL 302
AP LPGP +V G L
Sbjct: 951 APGLPGPKGSVGGMGL 966
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 103/323 (31%), Gaps = 81/323 (25%)
Query: 45 PDLPGPSSAP--DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------------- 89
P +PG P LPG P LPG P G P +PG A
Sbjct: 673 PGVPGQKGEPGIGLPGLKGLPGLPGIPGTPGEKGNIGGPGVPGEHGAIGPPGLQGIRGDP 732
Query: 90 --PDLPGPSSAP----------------------------------------DLPGPS-- 105
P L GP AP D+PGP
Sbjct: 733 GPPGLQGPKGAPGVPGIGPPGAVGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMPGPKGD 792
Query: 106 ----SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
P L G S P LPG P +PG PGP + G P PGP+
Sbjct: 793 KGSQGLPGLTGQSGLPGLPGQQGTPGVPG------FPGPKGEMGVMGTPGQPGSPGPAGL 846
Query: 162 PDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
P LPG P GP P G LPG + D S G
Sbjct: 847 PGLPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQ 906
Query: 219 PGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------ 269
GP+ G P +PG + P PGP P + G AP LPGP +
Sbjct: 907 IGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGIGGTPGAPGLPGPKGSVGGMGL 966
Query: 270 PDLPGPSSAPDLPGPSSAPDLPG 292
P PG P +PGP P LPG
Sbjct: 967 PGTPGEKGVPGIPGPQGVPGLPG 989
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 57/160 (35%), Gaps = 10/160 (6%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP + G S P PG G P PGP P G +P LPG
Sbjct: 1010 RPGDKGEQGISGFPGSPGEKGEKGSAGVPGIPGSPGPKGLPGTVGYPGSPGLPGEKGDKG 1069
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG P + G + P PGP+ GP+ PG P G P LPG
Sbjct: 1070 LPGSDGIPGIKGEAGLPGQPGPT------GPAGQKGEPGSDGIPGSVGEKGEPGLPG-RG 1122
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
P PG A G PG + +P +PG P
Sbjct: 1123 FPGFPG---AKGEKGSKGDVGFPGQAGSPGIPGSKGEPGF 1159
>gi|456753404|gb|JAA74162.1| collagen, type IV, alpha 1 [Sus scrofa]
Length = 1669
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 99/268 (36%), Gaps = 25/268 (9%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D+PGP L G P L G S P LPG P LPG PGP + G
Sbjct: 837 DMPGPKGDKGLQG---LPGLTGQSGLPGLPGQQGTPGLPG------FPGPKGEMGVMGTP 887
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
P PGP+ AP LPG PG P P G LPG + D S
Sbjct: 888 GQPGSPGPAGAPGLPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMK 947
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLP 201
G GP+ G AP +PG + P PGP P + G AP LP
Sbjct: 948 GQKGDQGEKGQTGPTGDKGSRGDPGAPGVPGKDGQAGHPGHPGPKGDPGISGTPGAPGLP 1007
Query: 202 GPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
GP + P PG P +PGP P LPG A G + P + P P
Sbjct: 1008 GPKGSVGGMGLPGTPGEKGVPGIPGPQGVPGLPGEKGAKGEKGQAGLPGI----GIPGRP 1063
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
G L G +P G + +PG
Sbjct: 1064 GDKGDQGLAGFPGSPGEKGEKGSSGIPG 1091
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 103/276 (37%), Gaps = 22/276 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
V P +P PGP+ AP LPG PG S GP P G LPG
Sbjct: 883 VMGTPGQPGSPGPAGAPGLPGEKGDHGFPGSS------GPRGDPGFKGDKGDVGLPGKPG 936
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPD 136
+ D S G GP+ G AP +PG + P PGP P
Sbjct: 937 SMDKVDMGSMKGQKGDQGEKGQTGPTGDKGSRGDPGAPGVPGKDGQAGHPGHPGPKGDPG 996
Query: 137 LPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
+ G AP LPGP + P PG P +PGP P LPG A G + P
Sbjct: 997 ISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGVPGLPGEKGAKGEKGQAGLPG 1056
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
+ P PG L G +P G + +PG P PGP +P G
Sbjct: 1057 I----GIPGRPGDKGDQGLAGFPGSPGEKGEKGSSGIPG---LPGSPGPKGSPGSVGYPG 1109
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
+P PG LPG AP G + P PGP+
Sbjct: 1110 SPGSPGEKGDKGLPGLDGAPGSKGEAGLPGKPGPTG 1145
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 107/316 (33%), Gaps = 64/316 (20%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPG P LPG P G P +PG A PG PGP P L GP
Sbjct: 738 LPGLKGLPGLPGTPGTPGEKGNIGGPGVPGEHGAIGPPGLQGIRGDPGP---PGLQGPKG 794
Query: 89 AP----------------------------------------DLPGPSSAPDLPGPSSAP 108
AP D+PGP L G P
Sbjct: 795 APGVPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMPGPKGDKGLQG---LP 851
Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 168
L G S P LPG P LPG PGP + G P PGP+ AP LPG
Sbjct: 852 GLTGQSGLPGLPGQQGTPGLPG------FPGPKGEMGVMGTPGQPGSPGPAGAPGLPGEK 905
Query: 169 SAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P GP P G LPG + D S G GP+
Sbjct: 906 GDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQTGPTGDK 965
Query: 226 DLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPS 276
G AP +PG + P PGP P + G AP LPGP + P PG
Sbjct: 966 GSRGDPGAPGVPGKDGQAGHPGHPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEK 1025
Query: 277 SAPDLPGPSSAPDLPG 292
P +PGP P LPG
Sbjct: 1026 GVPGIPGPQGVPGLPG 1041
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 102/335 (30%), Positives = 112/335 (33%), Gaps = 80/335 (23%)
Query: 29 LPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSA-----------------PDL 65
LPGP A LPG P PG P LPG A L
Sbjct: 644 LPGPPGAEGLPGSPGFQGPQGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPKGVDGL 703
Query: 66 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--DLPGPSSAPDLPGPSSAPDLPGPS 123
PG + P PG LPG P PG P LPG P LPG P G
Sbjct: 704 PGDAGPPGNPGRQGFNGLPG---NPGAPGQKGEPGIGLPGLKGLPGLPGTPGTPGEKGNI 760
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS------------------------ 159
P +PG A PG PGP P L GP
Sbjct: 761 GGPGVPGEHGAIGPPGLQGIRGDPGP---PGLQGPKGAPGVPGIGPPGAMGPPGGQGPPG 817
Query: 160 --SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
P + G P PG D+PGP L G P L G S P LPG P
Sbjct: 818 SSGPPGVKGEKGFPGFPG----LDMPGPKGDKGLQG---LPGLTGQSGLPGLPGQQGTPG 870
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
LPG PGP + G P PGP+ AP LPG PG S GP
Sbjct: 871 LPG------FPGPKGEMGVMGTPGQPGSPGPAGAPGLPGEKGDHGFPGSS------GPRG 918
Query: 278 APDLPGPSSAPDLPGPSSTV----LGSYLGEAGHQ 308
P G LPG ++ +GS G+ G Q
Sbjct: 919 DPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQ 953
Score = 38.1 bits (87), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 106/385 (27%), Positives = 117/385 (30%), Gaps = 131/385 (34%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAP----------------------------- 54
P +P +PG + +P G P LPGP +P
Sbjct: 549 PGQPGMPGRAGSP---GRDGHPGLPGPKGSPGSAGLKGERGPPGGVGFPGSRGDIGPPGP 605
Query: 55 ---------------DLPGPSSAPDLPGPSSAPD----LPGPSSAPDLPGPSSAPDLPGP 95
PG AP PGP LPGP A LPG +P GP
Sbjct: 606 PGFGPIGPIGDKGQAGFPGNPGAPGQPGPKGEAGKVVPLPGPPGAEGLPG---SPGFQGP 662
Query: 96 SSAPDLPGPSSAPDLPGPSSA-----------------PDLPGPSSAPDLPGPSSAPDLP 138
PG P LPG A LPG + P PG LP
Sbjct: 663 QGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPKGVDGLPGDAGPPGNPGRQGFNGLP 722
Query: 139 GPSSAP--------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
G AP LPG P LPG P G P +PG A PG
Sbjct: 723 GNPGAPGQKGEPGIGLPGLKGLPGLPGTPGTPGEKGNIGGPGVPGEHGAIGPPGLQGIRG 782
Query: 191 LPGPSSAPDLPGPSSAP----------------------------------------DLP 210
PGP P L GP AP D+P
Sbjct: 783 DPGP---PGLQGPKGAPGVPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMP 839
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
GP L G P L G S P LPG P LPG PGP + G P
Sbjct: 840 GPKGDKGLQG---LPGLTGQSGLPGLPGQQGTPGLPG------FPGPKGEMGVMGTPGQP 890
Query: 271 DLPGPSSAPDLPGPSSAPDLPGPSS 295
PGP+ AP LPG PG S
Sbjct: 891 GSPGPAGAPGLPGEKGDHGFPGSSG 915
>gi|171544947|ref|NP_001116390.1| collagen type I alpha 1 precursor [Oryzias latipes]
gi|158936960|dbj|BAF91497.1| collagen type I alpha 1 [Oryzias latipes]
Length = 1446
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 107/280 (38%), Gaps = 26/280 (9%)
Query: 26 EPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
EP PG AP PG P GP+ A PG AP L GP + PG + P
Sbjct: 457 EPGAPGARGAPGERGAPGGRGFPGSDGPAGAKGAPGERGAPGLVGPKGSTGEPGRTGEPG 516
Query: 83 LPGP---SSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
LPG + +P PGP PG P PG A PG P G +
Sbjct: 517 LPGAKGMTGSPGSPGPDGKTGPAGAPGQDGRPGPPGSVGARGQPGVMGFPGPKGAAGDAG 576
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLP----GPSSAPDLPGPSSAPDLPGPSSAPDLP 192
PG GP+ AP G S P P GP+ GP+ AP G LP
Sbjct: 577 KPGERGVMGPTGPAGAPGKDG-DSGPQGPSGPSGPAGERGEQGPAGAPGFQG------LP 629
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
GP A PG LPG + AP L G PG AP GP+ A PG +
Sbjct: 630 GPQGAIGEPGKPGEQGLPGDAGAPGLTGARGDRGFPGERGAPGPVGPAGARGSPGSAGND 689
Query: 253 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G + AP PG P L G +PG A LPG
Sbjct: 690 GAKGDAGAPGAPGAQGPPGLQG------MPGERGAAGLPG 723
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 112/300 (37%), Gaps = 40/300 (13%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P E PG P GP+ A PG AP L GP + PG + P LPG
Sbjct: 467 PGERGAPGGRGFPGSDGPAGAKGAPGERGAPGLVGPKGSTGEPGRTGEPGLPGAKGMTGS 526
Query: 84 PGPSSAPD-LPGPSSAPD---------------------LPGPSSAPD---LPGPSSAPD 118
PG S PD GP+ AP PGP A PG
Sbjct: 527 PG-SPGPDGKTGPAGAPGQDGRPGPPGSVGARGQPGVMGFPGPKGAAGDAGKPGERGVMG 585
Query: 119 LPGPSSAPDLPGPSSAPDLP----GPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAP 171
GP+ AP G S P P GP+ GP+ AP LPGP A PG
Sbjct: 586 PTGPAGAPGKDG-DSGPQGPSGPSGPAGERGEQGPAGAPGFQGLPGPQGAIGEPGKPGEQ 644
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
LPG + AP L G PG AP GP+ A PG + G + AP PG
Sbjct: 645 GLPGDAGAPGLTGARGDRGFPGERGAPGPVGPAGARGSPGSAGNDGAKGDAGAPGAPGAQ 704
Query: 232 SAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
P L PG A LPG G A PG A L GP LPGP+ AP
Sbjct: 705 GPPGLQGMPGERGAAGLPGLRGDRGDQGAKGADGAPGKDGARGLTGPIG---LPGPAGAP 761
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 97/316 (30%), Positives = 112/316 (35%), Gaps = 54/316 (17%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------PSSAP 81
GP+ A PG AP L GP + PG + P LPG PG P+ AP
Sbjct: 483 GPAGAKGAPGERGAPGLVGPKGSTGEPGRTGEPGLPGAKGMTGSPGSPGPDGKTGPAGAP 542
Query: 82 D---------------------LPGPSSAPDLPGPSSAPDLPGPS-----------SAPD 109
PGP A G + GP+ S P
Sbjct: 543 GQDGRPGPPGSVGARGQPGVMGFPGPKGAAGDAGKPGERGVMGPTGPAGAPGKDGDSGPQ 602
Query: 110 LP----GPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
P GP+ GP+ AP LPGP A PG LPG + AP L G
Sbjct: 603 GPSGPSGPAGERGEQGPAGAPGFQGLPGPQGAIGEPGKPGEQGLPGDAGAPGLTGARGDR 662
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLP 219
PG AP GP+ A PG + G + AP PG P L PG A LP
Sbjct: 663 GFPGERGAPGPVGPAGARGSPGSAGNDGAKGDAGAPGAPGAQGPPGLQGMPGERGAAGLP 722
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 279
G G A PG A L GP LPGP+ AP G A GP+ A
Sbjct: 723 GLRGDRGDQGAKGADGAPGKDGARGLTGPIG---LPGPAGAPGDKGEPGAAGPVGPAGAR 779
Query: 280 DLPGPSSAPDLPGPSS 295
PG PGP+
Sbjct: 780 GAPGERGESGPPGPAG 795
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 92/242 (38%), Gaps = 20/242 (8%)
Query: 58 GPSSAPDLPGPSSAPDLP----GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 113
GP+ AP G S P P GP+ GP+ AP G LPGP A PG
Sbjct: 588 GPAGAPGKDG-DSGPQGPSGPSGPAGERGEQGPAGAPGFQG------LPGPQGAIGEPGK 640
Query: 114 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 173
LPG + AP L G PG AP GP+ A PG + G + AP
Sbjct: 641 PGEQGLPGDAGAPGLTGARGDRGFPGERGAPGPVGPAGARGSPGSAGNDGAKGDAGAPGA 700
Query: 174 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 233
PG P L G +PG A LPG G A PG A L GP
Sbjct: 701 PGAQGPPGLQG------MPGERGAAGLPGLRGDRGDQGAKGADGAPGKDGARGLTGPIG- 753
Query: 234 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
LPGP+ AP G A GP+ A PG PGP+ PG P G
Sbjct: 754 --LPGPAGAPGDKGEPGAAGPVGPAGARGAPGERGESGPPGPAGFAGPPGSDGQPGAKGE 811
Query: 294 SS 295
+
Sbjct: 812 AG 813
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 86/228 (37%), Gaps = 16/228 (7%)
Query: 24 PLEPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
P P P GP+ GP+ AP G LPGP A PG LPG + AP
Sbjct: 601 PQGPSGPSGPAGERGEQGPAGAPGFQG------LPGPQGAIGEPGKPGEQGLPGDAGAPG 654
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
L G PG AP GP+ A PG + G + AP PG P L G
Sbjct: 655 LTGARGDRGFPGERGAPGPVGPAGARGSPGSAGNDGAKGDAGAPGAPGAQGPPGLQG--- 711
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+PG A LPG G A PG A L GP LPGP+ AP G
Sbjct: 712 ---MPGERGAAGLPGLRGDRGDQGAKGADGAPGKDGARGLTGPIG---LPGPAGAPGDKG 765
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
A GP+ A PG PGP+ PG P G +
Sbjct: 766 EPGAAGPVGPAGARGAPGERGESGPPGPAGFAGPPGSDGQPGAKGEAG 813
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 90/241 (37%), Gaps = 19/241 (7%)
Query: 57 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 116
PG P G + AP GP A G A PG A PG AP G
Sbjct: 422 PGAKGEPGAKGEAGAPGAQGPPGAHGEEGKRGARGEPGAPGARGAPGERGAP---GGRGF 478
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD-LPG 175
P GP+ A PG AP L GP + PG + P LPG PG S PD G
Sbjct: 479 PGSDGPAGAKGAPGERGAPGLVGPKGSTGEPGRTGEPGLPGAKGMTGSPG-SPGPDGKTG 537
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 235
P+ AP G P PG A PG P G + PG GP+ AP
Sbjct: 538 PAGAP---GQDGRPGPPGSVGARGQPGVMGFPGPKGAAGDAGKPGERGVMGPTGPAGAPG 594
Query: 236 LPGPSSAPDLP----GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
G S P P GP+ GP+ AP G LPGP A PG LP
Sbjct: 595 KDG-DSGPQGPSGPSGPAGERGEQGPAGAPGFQG------LPGPQGAIGEPGKPGEQGLP 647
Query: 292 G 292
G
Sbjct: 648 G 648
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 70/183 (38%), Gaps = 9/183 (4%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P E LPG + AP L G PG AP GP+ A PG + G + AP
Sbjct: 640 KPGEQGLPGDAGAPGLTGARGDRGFPGERGAPGPVGPAGARGSPGSAGNDGAKGDAGAPG 699
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
PG P L G +PG A LPG G A PG A L GP
Sbjct: 700 APGAQGPPGLQG------MPGERGAAGLPGLRGDRGDQGAKGADGAPGKDGARGLTGPIG 753
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
LPGP+ AP G A GP+ A PG PGP+ PG P G
Sbjct: 754 ---LPGPAGAPGDKGEPGAAGPVGPAGARGAPGERGESGPPGPAGFAGPPGSDGQPGAKG 810
Query: 203 PSS 205
+
Sbjct: 811 EAG 813
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 88/241 (36%), Gaps = 37/241 (15%)
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
PG P G + AP GP A G A PG A PG AP G
Sbjct: 422 PGAKGEPGAKGEAGAPGAQGPPGAHGEEGKRGARGEPGAPGARGAPGERGAP---GGRGF 478
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD-LPG 202
P GP+ A PG AP L GP + PG + P LPG PG S PD G
Sbjct: 479 PGSDGPAGAKGAPGERGAPGLVGPKGSTGEPGRTGEPGLPGAKGMTGSPG-SPGPDGKTG 537
Query: 203 PSSAP---------------------DLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPG 238
P+ AP PGP A PG GP+ AP G
Sbjct: 538 PAGAPGQDGRPGPPGSVGARGQPGVMGFPGPKGAAGDAGKPGERGVMGPTGPAGAPGKDG 597
Query: 239 PSSAPDLP----GPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
S P P GP+ GP+ AP LPGP A PG LPG + AP L
Sbjct: 598 -DSGPQGPSGPSGPAGERGEQGPAGAPGFQGLPGPQGAIGEPGKPGEQGLPGDAGAPGLT 656
Query: 292 G 292
G
Sbjct: 657 G 657
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 55/137 (40%), Gaps = 8/137 (5%)
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PG P G + AP GP A G A PG A PG AP G
Sbjct: 422 PGAKGEPGAKGEAGAPGAQGPPGAHGEEGKRGARGEPGAPGARGAPGERGAP---GGRGF 478
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD-LPG 283
P GP+ A PG AP L GP + PG + P LPG PG S PD G
Sbjct: 479 PGSDGPAGAKGAPGERGAPGLVGPKGSTGEPGRTGEPGLPGAKGMTGSPG-SPGPDGKTG 537
Query: 284 PSSAP---DLPGPSSTV 297
P+ AP PGP +V
Sbjct: 538 PAGAPGQDGRPGPPGSV 554
>gi|402902462|ref|XP_003914121.1| PREDICTED: collagen alpha-1(IV) chain-like, partial [Papio anubis]
Length = 1307
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 103/276 (37%), Gaps = 22/276 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
V P +P PGP P LPG PG S GP P L G LPG
Sbjct: 521 VMGTPGQPGSPGPVGVPGLPGEKGDHGFPGSS------GPRGDPGLKGDKGDVGLPGKPG 574
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPD 136
+ D S G GP G P +PG + P PGP P
Sbjct: 575 SMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPG 634
Query: 137 LPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
+ G AP LPGP + P PG P +PGP +P LPG A G + P
Sbjct: 635 ISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGEKGAKGAKGQAGPPG 694
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
+ P LPG + G +P G + +PG +P L G + PG
Sbjct: 695 I----GIPGLPGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSVGYPG--- 747
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
+P LPG LPG P + G + P PGP+
Sbjct: 748 SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTG 783
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 95/247 (38%), Gaps = 24/247 (9%)
Query: 57 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 110
PG P G + P PGP P + G AP LPGP + P PG P +
Sbjct: 609 PGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 668
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
PGP +P LPG A G + P + P LPG + G +P G +
Sbjct: 669 PGPQGSPGLPGEKGAKGAKGQAGPPGI----GIPGLPGEKGDQGIAGFPGSPGEKGEKGS 724
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
+PG +P L G + PG +P LPG LPG P + G + P PGP
Sbjct: 725 IGIPGMPGSPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGP 781
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-----SAPDLPGPSSAPDLPGPS 285
+ GP+ PG P G P LPG A G PG +
Sbjct: 782 T------GPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKGSKGEVGFPGLA 835
Query: 286 SAPDLPG 292
+P +PG
Sbjct: 836 GSPGIPG 842
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 104/285 (36%), Gaps = 31/285 (10%)
Query: 28 DLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
D+PGP P + G S P LPG +P +PG PG + G P
Sbjct: 475 DMPGPKGDKGSQGLPGVTGQSGLPGLPGQQGSPGIPG------FPGSKGEMGVMGTPGQP 528
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
PGP P LPG PG S GP P L G LPG + D
Sbjct: 529 GSPGPVGVPGLPGEKGDHGFPGSS------GPRGDPGLKGDKGDVGLPGKPGSMDKVDMG 582
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAP 198
S G GP G P +PG + P PGP P + G AP
Sbjct: 583 SMKGQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAP 642
Query: 199 DLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
LPGP + P PG P +PGP +P LPG A G + P + P
Sbjct: 643 GLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGEKGAKGAKGQAGPPGI----GIP 698
Query: 253 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
LPG + G +P G + +PG +P L G +V
Sbjct: 699 GLPGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSV 743
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 95/243 (39%), Gaps = 26/243 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PGP P + G AP LPGP LPG +PG +PGP +P
Sbjct: 623 QPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPG------IPGPQGSPG 676
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG A G + P + P LPG + G +P G + +PG
Sbjct: 677 LPGEKGAKGAKGQAGPPGI----GIPGLPGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPG 732
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+P L G + PG +P LPG LPG P + G + P PGP+ G
Sbjct: 733 SPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPT------G 783
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P+ PG P G P LPG P PG A G PG + +P
Sbjct: 784 PAGQKGEPGSDGIPGSAGEKGEPGLPG-RGFPGFPG---AKGDKGSKGEVGFPGLAGSPG 839
Query: 263 LPG 265
+PG
Sbjct: 840 IPG 842
>gi|291407756|ref|XP_002720230.1| PREDICTED: type IV alpha 6 collagen [Oryctolagus cuniculus]
Length = 1744
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 118/297 (39%), Gaps = 29/297 (9%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
G S AP PGP LPG P L G P PG P+LPG PGP
Sbjct: 720 GSSGAPGFPGPKGTQGLPGTPGQPGLRGNKGEPGNPGLVHLPELPG------FPGPRGEK 773
Query: 91 DLPGPSSAPD---LPGPSSAPDLPGPSSAP-DLPG-PSSAPDLPGPSSAPDLPGPSSAPD 145
LPG P LPG + P LPG P D+ G + AP G P G S
Sbjct: 774 GLPGFPGLPGKDGLPGKAGGPGLPGSKGVPGDIFGAENGAPGKQGLQGLPGDKGVSGDSG 833
Query: 146 LPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
LPGP LPGP PG PGPS + L G LPG AP PG
Sbjct: 834 LPGPKGLHGRSGLPGPKGERGSPGSPGLMGQPGPSGSGGLYGIKGKSGLPG---APGFPG 890
Query: 203 PSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
+ P GP PG + P L G S +P G +P LPG + P L GP
Sbjct: 891 IAGHPGKRGPKGETGYPGATGKRGQPGLQGHSGSPGAAGLLGSPGLPGDTGLPGLLGPKG 950
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL-----GEAGHQKSP 311
G P +PG P +PG S + G S LG++ GE GH+ P
Sbjct: 951 EKGSVGLVGFPGVPG---LPGIPGTSGLKGISG-SPGKLGAFGQAGGPGEKGHRGDP 1003
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 112/286 (39%), Gaps = 29/286 (10%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSA 80
P LPGP LPG LPG P PG P L GPS AP PGP
Sbjct: 677 PGLPGPRG---LPGDQGRDGLPGKQGLPGPPGITLPCITSGLYGPSGSSGAPGFPGPKGT 733
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---L 137
LPG P L G P PG P+LPG PGP LPG P L
Sbjct: 734 QGLPGTPGQPGLRGNKGEPGNPGLVHLPELPG------FPGPRGEKGLPGFPGLPGKDGL 787
Query: 138 PGPSSAPDLPGPSSAP-DLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLP 192
PG + P LPG P D+ G + AP G P G S LPGP LP
Sbjct: 788 PGKAGGPGLPGSKGVPGDIFGAENGAPGKQGLQGLPGDKGVSGDSGLPGPKGLHGRSGLP 847
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
GP PG PGPS + L G LPG AP PG + P GP
Sbjct: 848 GPKGERGSPGSPGLMGQPGPSGSGGLYGIKGKSGLPG---APGFPGIAGHPGKRGPKGET 904
Query: 253 DLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
PG + P L G S +P G +P LPG + P L GP
Sbjct: 905 GYPGATGKRGQPGLQGHSGSPGAAGLLGSPGLPGDTGLPGLLGPKG 950
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 94/248 (37%), Gaps = 9/248 (3%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
LPST+ P P G + P LPG + + G P +PG S + L G P P
Sbjct: 1059 LPSTIKGLPGNPGPSGSTGLPGLPGLKGSRGIMG---FPGMPGKSGSQGLNGTPGLPGSP 1115
Query: 76 GPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
GP + G + PGP G GP+ PG G +
Sbjct: 1116 GPQGSKGDQGQTFKVSGNPGPKGKTGESGLKGQKGKDGPAGDMGFPGNKGENGKTGIAGD 1175
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
LPG P + G P LPG S P + GP + L GP +P LPG LPG
Sbjct: 1176 IGLPGSPGLPGIAGVRGDPGLPGFSGHPGVAGPLGSSGLVGPKGSPGLPGLHGLNGLPGT 1235
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----PGPSSAPDLPGPSSAPDLPGPSS 250
PGPS +PGP+ P G P + PG G P L GP+
Sbjct: 1236 KGTHGTPGPSIT-GVPGPAGLPGAKGEKGTPGIGIGAPGKPGIRGQKGGQGFPGLQGPAG 1294
Query: 251 APDLPGPS 258
P PG S
Sbjct: 1295 LPGAPGIS 1302
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 102/277 (36%), Gaps = 34/277 (12%)
Query: 18 STVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 77
ST + P E PGP P + G + D A PG P LPG
Sbjct: 604 STQSGMPGEKGDPGPRGFPGVTG-ARGEDGAPGLPGLPGLPGDGAQGFPGERGFPGLPGE 662
Query: 78 SSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGP 131
LPG P LPGP LPG LPG P PG P L GP
Sbjct: 663 KGQRGPIGLPG-IGLPGLPGPRG---LPGDQGRDGLPGKQGLPGPPGITLPCITSGLYGP 718
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
S G S AP PGP LPG P L G P PG P+LPG
Sbjct: 719 S------GSSGAPGFPGPKGTQGLPGTPGQPGLRGNKGEPGNPGLVHLPELPG------F 766
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPG-PSSAPDLPGPS 249
PGP LPG P LPG LPG + P LPG P D+ G + AP G
Sbjct: 767 PGPRGEKGLPG---FPGLPGKDG---LPGKAGGPGLPGSKGVPGDIFGAENGAPGKQGLQ 820
Query: 250 SAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPG 283
P G S LPGP LPGP PG
Sbjct: 821 GLPGDKGVSGDSGLPGPKGLHGRSGLPGPKGERGSPG 857
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 110/295 (37%), Gaps = 35/295 (11%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSA 80
P +P L G P PG P+LPG PGP LPG P LPG +
Sbjct: 740 PGQPGLRGNKGEPGNPGLVHLPELPG------FPGPRGEKGLPGFPGLPGKDGLPGKAGG 793
Query: 81 PDLPGPSSAPD--------LPGPSSAPDLP---GPSSAPDLPGPS---SAPDLPGPSSAP 126
P LPG P PG LP G S LPGP LPGP
Sbjct: 794 PGLPGSKGVPGDIFGAENGAPGKQGLQGLPGDKGVSGDSGLPGPKGLHGRSGLPGPKGER 853
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
PG PGPS + L G LPG AP PG + P GP PG +
Sbjct: 854 GSPGSPGLMGQPGPSGSGGLYGIKGKSGLPG---APGFPGIAGHPGKRGPKGETGYPGAT 910
Query: 187 SA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
P L G S +P G +P LPG + P L GP G P +PG P
Sbjct: 911 GKRGQPGLQGHSGSPGAAGLLGSPGLPGDTGLPGLLGPKGEKGSVGLVGFPGVPG---LP 967
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVL 298
+PG S L G S +P G PG PGP+ P P+ +L
Sbjct: 968 GIPGTSG---LKGISGSPGKLGAFGQAGGPGEKGHRGDPGPAGIPGSRFPTLNIL 1019
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 69/183 (37%), Gaps = 1/183 (0%)
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
P PGPS + LPG G P +PG S + L G P PGP + G
Sbjct: 1067 PGNPGPSGSTGLPGLPGLKGSRGIMGFPGMPGKSGSQGLNGTPGLPGSPGPQGSKGDQGQ 1126
Query: 177 S-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 235
+ PGP G GP+ PG G + LPG P
Sbjct: 1127 TFKVSGNPGPKGKTGESGLKGQKGKDGPAGDMGFPGNKGENGKTGIAGDIGLPGSPGLPG 1186
Query: 236 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
+ G P LPG S P + GP + L GP +P LPG LPG PGPS
Sbjct: 1187 IAGVRGDPGLPGFSGHPGVAGPLGSSGLVGPKGSPGLPGLHGLNGLPGTKGTHGTPGPSI 1246
Query: 296 TVL 298
T +
Sbjct: 1247 TGV 1249
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 96/277 (34%), Gaps = 54/277 (19%)
Query: 58 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPS--------- 105
GP+ AP GP G P L S P PGP P + G
Sbjct: 578 GPAGAPGSHGPPGPAGSKGEKGEPTLSTQSGMPGEKGDPGPRGFPGVTGARGEDGAPGLP 637
Query: 106 --------SAPDLPGPSSAPDLPGPSSA-----------PDLPGPSSAPDLPGPSSAPDL 146
A PG P LPG P LPGP LPG L
Sbjct: 638 GLPGLPGDGAQGFPGERGFPGLPGEKGQRGPIGLPGIGLPGLPGPRG---LPGDQGRDGL 694
Query: 147 PGPSSAPDLPG---PSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
PG P PG P L GP S AP PGP LPG P L G P
Sbjct: 695 PGKQGLPGPPGITLPCITSGLYGPSGSSGAPGFPGPKGTQGLPGTPGQPGLRGNKGEPGN 754
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
PG P+LPG PGP LPG P LPG LPG + P LPG
Sbjct: 755 PGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGKAGGPGLPGSKGV 802
Query: 261 P-DLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
P D+ G + AP G P G S LPGP
Sbjct: 803 PGDIFGAENGAPGKQGLQGLPGDKGVSGDSGLPGPKG 839
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 96/291 (32%), Gaps = 35/291 (12%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PGP G GP+ PG G + LPG P + G
Sbjct: 1134 PGPKGKTGESGLKGQKGKDGPAGDMGFPGNKGENGKTGIAGDIGLPGSPGLPGIAGVRGD 1193
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
P LPG S P + GP + L GP +P LPG LPG PGPS +PGP
Sbjct: 1194 PGLPGFSGHPGVAGPLGSSGLVGPKGSPGLPGLHGLNGLPGTKGTHGTPGPSIT-GVPGP 1252
Query: 150 SSAPDLPGPSSAPDL----PGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPG 202
+ P G P + PG G P L GP+ P PG PS PG
Sbjct: 1253 AGLPGAKGEKGTPGIGIGAPGKPGIRGQKGGQGFPGLQGPAGLPGAPGISLPSLIAGQPG 1312
Query: 203 PSSAPDLPGPSSAPDLP------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
P L G P G S P PG P GP +PG S
Sbjct: 1313 DPGRPGLDGERGRPGPQGPPGPPGPSADQGDSGDPGFPG---IPGPRGPKGDLGIPGFSG 1369
Query: 251 APDLPGPSSAPDLPGPSSAPD------------LPGPSSAPDLPGPSSAPD 289
P G PG P + G + + PGP AP
Sbjct: 1370 LPGELGLKGMRGEPGFMGIPGKVGPPGDPGFPGMKGKAGSRGFPGPQGAPG 1420
>gi|426376003|ref|XP_004054800.1| PREDICTED: collagen alpha-1(IV) chain [Gorilla gorilla gorilla]
Length = 1642
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 111/302 (36%), Gaps = 49/302 (16%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 83
P + G S P LPG AP +PG P S ++ G P PGP AP LPG
Sbjct: 824 PGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDHGF 883
Query: 84 PG---PSSAPDLPGPSSAPDLPGPSSAPDL------------------------------ 110
PG P P L G LPG + D
Sbjct: 884 PGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSRGD 943
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
PG P G + P PGP P + G AP LPGP + P PG P +
Sbjct: 944 PGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 1003
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PGP +P LPG A G + P + P L G + G +P G +
Sbjct: 1004 PGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGIAGFPGSPGEKGEKGS 1059
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
+PG +P L G + PG +P LPG LPG P + G + P PGP
Sbjct: 1060 IGIPGMPGSPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGP 1116
Query: 285 SS 286
+
Sbjct: 1117 TG 1118
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 103/282 (36%), Gaps = 25/282 (8%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D+PGP G P + G S P LPG AP +PG PG + G
Sbjct: 810 DMPGPKGDK---GAQGLPGITGQSGLPGLPGQQGAPGIPG------FPGSKGEMGVMGTP 860
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
P PGP AP LPG PG P P L G LPG + D S
Sbjct: 861 GQPGSPGPVGAPGLPGEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMK 920
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLP 201
G GP G P +PG + P PGP P + G AP LP
Sbjct: 921 GQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLP 980
Query: 202 GPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
GP + P PG P +PGP +P LPG A G + P + P L
Sbjct: 981 GPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLR 1036
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
G + G +P G + +PG +P L G +V
Sbjct: 1037 GEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSV 1078
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 94/243 (38%), Gaps = 26/243 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PGP P + G AP LPGP LPG +PG +PGP +P
Sbjct: 958 QPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPG------IPGPQGSPG 1011
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG A G + P + P L G + G +P G + +PG
Sbjct: 1012 LPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPG 1067
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+P L G + PG +P LPG LPG P + G + P PGP+ G
Sbjct: 1068 SPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPT------G 1118
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P+ PG P G P LPG P PG A G PG + +P
Sbjct: 1119 PAGQKGEPGSDGIPGSAGEKGEPGLPG-RGFPGFPG---AKGDKGSKGEVGFPGLAGSPG 1174
Query: 263 LPG 265
+PG
Sbjct: 1175 IPG 1177
>gi|410947738|ref|XP_003980599.1| PREDICTED: collagen alpha-1(IV) chain [Felis catus]
Length = 1693
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 110/318 (34%), Gaps = 59/318 (18%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D+PGP PG P L G S P LPG P LPG +PGP + G
Sbjct: 861 DMPGPKGDKGSPG---LPGLTGQSGLPGLPGQQGTPGLPG------IPGPKGEMGVMGTP 911
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
P PGP+ P LPG PG P P G LPG + D S
Sbjct: 912 GQPGSPGPAGVPGLPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMK 971
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLP 201
G GP+ G P +PG + P PGP P + G AP LP
Sbjct: 972 GQKGDQGEKGQIGPTGDKGSRGDPGTPGMPGKDGQAGHPGQPGPKGDPGIGGTPGAPGLP 1031
Query: 202 GPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---------- 245
GP + P PG P +PGP P LPG A G + P +
Sbjct: 1032 GPKGSVGGMGLPGTPGEKGVPGIPGPQGVPGLPGEKGAKGEKGQAGLPGIGIPGRPGDKG 1091
Query: 246 ----------------------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
PGP +P G +P LPG LPG +
Sbjct: 1092 DQGVAGFPGSPGEKGEKGSVGIPGIPGSPGPQGSPGSVGYPGSPGLPGDKGDRGLPGSAG 1151
Query: 278 APDLPGPSSAPDLPGPSS 295
P + G + P PGP+
Sbjct: 1152 IPGVKGEAGLPGKPGPAG 1169
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 103/276 (37%), Gaps = 22/276 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
V P +P PGP+ P LPG PG S GP P G LPG
Sbjct: 907 VMGTPGQPGSPGPAGVPGLPGEKGDHGFPGSS------GPRGDPGFKGDKGDVGLPGKPG 960
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPD 136
+ D S G GP+ G P +PG + P PGP P
Sbjct: 961 SMDKVDMGSMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGMPGKDGQAGHPGQPGPKGDPG 1020
Query: 137 LPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
+ G AP LPGP + P PG P +PGP P LPG A G + P
Sbjct: 1021 IGGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGVPGLPGEKGAKGEKGQAGLPG 1080
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
+ P PG + G +P G + +PG P PGP +P G
Sbjct: 1081 I----GIPGRPGDKGDQGVAGFPGSPGEKGEKGSVGIPG---IPGSPGPQGSPGSVGYPG 1133
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
+P LPG LPG + P + G + P PGP+
Sbjct: 1134 SPGLPGDKGDRGLPGSAGIPGVKGEAGLPGKPGPAG 1169
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 95/251 (37%), Gaps = 32/251 (12%)
Query: 57 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 110
PG P G + P PGP P + G AP LPGP + P PG P +
Sbjct: 995 PGTPGMPGKDGQAGHPGQPGPKGDPGIGGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 1054
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
PGP P LPG A G + P + P PG + G +P G +
Sbjct: 1055 PGPQGVPGLPGEKGAKGEKGQAGLPGI----GIPGRPGDKGDQGVAGFPGSPGEKGEKGS 1110
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 227
+PG P PGP +P G P LPG LPG + P + G + P
Sbjct: 1111 VGIPG---IPGSPGPQGSP---GSVGYPGSPGLPGDKGDRGLPGSAGIPGVKGEAGLPGK 1164
Query: 228 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP------DL 281
PGP+ GP+ PG P G P LPG + P PG
Sbjct: 1165 PGPA------GPAGQKGEPGSDGIPGSAGEKGEPGLPG-RAFPGFPGAKGEKGSKGDVGF 1217
Query: 282 PGPSSAPDLPG 292
PG + +P +PG
Sbjct: 1218 PGQAGSPGIPG 1228
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 115/336 (34%), Gaps = 77/336 (22%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSS 79
P PGP P + G AP LPGP + P PG P +PGP P LPG
Sbjct: 1009 HPGQPGPKGDPGIGGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGVPGLPGEKG 1068
Query: 80 APDLPGPSSAPDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
A G + P + PG + G +P G + +PG P PGP +
Sbjct: 1069 AKGEKGQAGLPGIGIPGRPGDKGDQGVAGFPGSPGEKGEKGSVGIPG---IPGSPGPQGS 1125
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
P G +P LPG LPG + P + G + P PGP+ GP+ PG
Sbjct: 1126 PGSVGYPGSPGLPGDKGDRGLPGSAGIPGVKGEAGLPGKPGPA------GPAGQKGEPGS 1179
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD------LPGPSSAPDLPG---------- 238
P G P LPG + P PG PG + +P +PG
Sbjct: 1180 DGIPGSAGEKGEPGLPG-RAFPGFPGAKGEKGSKGDVGFPGQAGSPGIPGSKGEQGFMGP 1238
Query: 239 ------------PSSAPDLP-GPSSAP---------------------DLPGPSSAPDLP 264
P A + P G A L G P P
Sbjct: 1239 PGPQGQPGLPGAPGHAVEGPKGDRGAQGQPGLPGLPGPMGPPGLPGLDGLKGDKGNPGWP 1298
Query: 265 GPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSTV 297
G AP PGP P LPG +P L G +
Sbjct: 1299 G---APGAPGPKGDPGFQGLPGIGGSPGLTGSKGDI 1331
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 103/323 (31%), Gaps = 81/323 (25%)
Query: 45 PDLPGPSSAP--DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------------- 89
P +PG P LPG P LPG P G P +PG
Sbjct: 749 PGVPGQKGEPGIGLPGLKGLPGLPGIPGTPGEKGNIGGPGVPGEHGVIGPPGLQGIRGDP 808
Query: 90 --PDLPGPSSAP----------------------------------------DLPGPS-- 105
P L GP AP D+PGP
Sbjct: 809 GPPGLQGPKGAPGVPGIGPPGAMGPPGGQGPPGSLGPPGLKGEKGFPGFPGLDMPGPKGD 868
Query: 106 ----SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
P L G S P LPG P LPG +PGP + G P PGP+
Sbjct: 869 KGSPGLPGLTGQSGLPGLPGQQGTPGLPG------IPGPKGEMGVMGTPGQPGSPGPAGV 922
Query: 162 PDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
P LPG P GP P G LPG + D S G
Sbjct: 923 PGLPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQ 982
Query: 219 PGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------ 269
GP+ G P +PG + P PGP P + G AP LPGP +
Sbjct: 983 IGPTGDKGSRGDPGTPGMPGKDGQAGHPGQPGPKGDPGIGGTPGAPGLPGPKGSVGGMGL 1042
Query: 270 PDLPGPSSAPDLPGPSSAPDLPG 292
P PG P +PGP P LPG
Sbjct: 1043 PGTPGEKGVPGIPGPQGVPGLPG 1065
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 111/335 (33%), Gaps = 80/335 (23%)
Query: 29 LPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSA-----------------PDL 65
LPGP A LPG P PG P LPG A L
Sbjct: 668 LPGPPGAQGLPGSPGFQGPQGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPKGVDGL 727
Query: 66 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--DLPGPSSAPDLPGPSSAPDLPGPS 123
PG P PG LPG P +PG P LPG P LPG P G
Sbjct: 728 PGDVGPPGSPGRPGFNGLPG---NPGVPGQKGEPGIGLPGLKGLPGLPGIPGTPGEKGNI 784
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS------------------------ 159
P +PG PG PGP P L GP
Sbjct: 785 GGPGVPGEHGVIGPPGLQGIRGDPGP---PGLQGPKGAPGVPGIGPPGAMGPPGGQGPPG 841
Query: 160 --SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
P L G P PG D+PGP PG P L G S P LPG P
Sbjct: 842 SLGPPGLKGEKGFPGFPG----LDMPGPKGDKGSPG---LPGLTGQSGLPGLPGQQGTPG 894
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
LPG +PGP + G P PGP+ P LPG PG S GP
Sbjct: 895 LPG------IPGPKGEMGVMGTPGQPGSPGPAGVPGLPGEKGDHGFPGSS------GPRG 942
Query: 278 APDLPGPSSAPDLPGPSSTV----LGSYLGEAGHQ 308
P G LPG ++ +GS G+ G Q
Sbjct: 943 DPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQ 977
>gi|225556461|gb|EEH04749.1| proteoglycan [Ajellomyces capsulatus G186AR]
Length = 666
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 116/260 (44%), Gaps = 8/260 (3%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+
Sbjct: 60 PTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDY 119
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P
Sbjct: 120 PVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTP 179
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P
Sbjct: 180 TDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVE 239
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDLPGPS-----SAPD 262
P P+ P P P+ P P P+ P P P+ P P P+ P P P+ +P+
Sbjct: 240 PTPTDYPVEPTPTDYPVEPTPTDYPVSPEPTPTDYPVEPTPTDYPVSPEPTPTDYPVSPE 299
Query: 263 LPGPSSAPDLPGPSSAPDLP 282
P P+ P P P+ A D P
Sbjct: 300 -PTPTDYPVSPAPTDATDYP 318
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 102/238 (42%), Gaps = 3/238 (1%)
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+
Sbjct: 60 PTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDY 119
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P
Sbjct: 120 PVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTP 179
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P
Sbjct: 180 TDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVE 239
Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPAQI 321
P P+ P P P+ P P P+ P P P+ T Y E P EP P
Sbjct: 240 PTPTDYPVEPTPTDYPVEPTPTDYPVSPEPTPT---DYPVEPTPTDYPVSPEPTPTDY 294
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 98/223 (43%), Gaps = 6/223 (2%)
Query: 36 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 95
P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P
Sbjct: 54 PNYPVE------PTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTP 107
Query: 96 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 155
+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P
Sbjct: 108 TDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVE 167
Query: 156 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 215
P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+
Sbjct: 168 PTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDY 227
Query: 216 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
P P P+ P P P+ P P P+ P P P+ P P P+
Sbjct: 228 PVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVSPEPT 270
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 119/275 (43%), Gaps = 16/275 (5%)
Query: 23 RPLEPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
P D P P+ P P P+ P P P+ P P P+ P P P+ P P P+
Sbjct: 68 EPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTD 127
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P
Sbjct: 128 YPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPT 187
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P
Sbjct: 188 PTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPV 247
Query: 200 LPGPSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDLPGPS-----SAPDLPGPSSAP 252
P P+ P P P+ P P P+ P P P+ P P P+ +P+ P P+ P
Sbjct: 248 EPTPTDYPVEPTPTDYPVSPEPTPTDYPVEPTPTDYPVSPEPTPTDYPVSPE-PTPTDYP 306
Query: 253 DLPGPSSAPDL-----PGPSSAPDLPGPSSAPDLP 282
P P+ A D P P+ P P P+ A D P
Sbjct: 307 VSPAPTDATDYPVTPEPTPTDYPVSPAPTDATDYP 341
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 119/301 (39%), Gaps = 43/301 (14%)
Query: 33 SSA-----------------------------------PDLPGPSSAPDLPGPSSAPDLP 57
S+ P P P+ P P P+ P P
Sbjct: 19 SATFNFPGFPGFPGFPGFPGFPGFPGFPGSPGSPDPNYPVEPTPTDYPVEPTPTDYPVEP 78
Query: 58 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 117
P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P
Sbjct: 79 TPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYP 138
Query: 118 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 177
P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P P+
Sbjct: 139 VEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPT 198
Query: 178 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
P P P+ P P P+ P P P+ P P P+ P P P+ P P P+ P P
Sbjct: 199 DYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEP 258
Query: 238 GPSSAPD--LPGPSSAPDLPGPSSAPDLPGPS-----SAPDLPGPSSAPDLPGPSSAPDL 290
P+ P P P+ P P P+ P P P+ +P+ P P+ P P P+ A D
Sbjct: 259 TPTDYPVSPEPTPTDYPVEPTPTDYPVSPEPTPTDYPVSPE-PTPTDYPVSPAPTDATDY 317
Query: 291 P 291
P
Sbjct: 318 P 318
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 128/298 (42%), Gaps = 48/298 (16%)
Query: 21 TERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
T+ P+EP P+ P P P+ P P P+ P P P+ P P P+ P P P+
Sbjct: 180 TDYPVEP---TPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDYPVEPTPTDY 236
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDLPGPS-----S 133
P P P+ P P P+ P P P+ P P P+ P P P+ P P P+
Sbjct: 237 PVEPTPTDYPVEPTPTDYPVEPTPTDYPVSPEPTPTDYPVEPTPTDYPVSPEPTPTDYPV 296
Query: 134 APDLPGPSSAPDLPGPSSAPDLP-----GPSSAPDLPGPSSAPDLP-----GPSSAPDLP 183
+P+ P P+ P P P+ A D P P+ P P P+ A D P P+ P P
Sbjct: 297 SPE-PTPTDYPVSPAPTDATDYPVTPEPTPTDYPVSPAPTDATDYPVTPEPTPTDYPVSP 355
Query: 184 GPSSAPDLP---GPSSAPDLP---GPSSAPDLP---GPSSAPDLP---GPSSAPDLP--- 228
P+ + D P P+ A D P P+ A D P P+ A D P P+ A D P
Sbjct: 356 APTDSTDYPVSPAPTDATDYPVSPAPTDATDYPVSPAPTDATDYPVSPAPTDATDYPVSP 415
Query: 229 GPSSAPDLP---GPSSAPDLP---GPSSAPDLP---GPSSAPDLP---GPSSAPDLPG 274
P+ A D P P+ A D P P+ A D P P+ A D P P+ A D P
Sbjct: 416 APTDATDYPVSPAPTDATDYPVSPAPTDATDYPVSPAPTDATDYPVSPAPTDATDYPA 473
>gi|268577295|ref|XP_002643629.1| C. briggsae CBR-LET-2 protein [Caenorhabditis briggsae]
Length = 1758
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 112/304 (36%), Gaps = 40/304 (13%)
Query: 26 EPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPG-PS 78
+P LPG P +PG + AP PG P PG PG P LPG P
Sbjct: 1072 QPGLPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMKGEAGYPGQDGLPGRDGLPGVPG 1131
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAP 135
DL G S P LPG AP L G P + G S P +PG PG
Sbjct: 1132 MKGDL-GDSGQPGLPG---APGLDGQPGVPGIRGDKGQSGLPGIPGDRGMDGFPGQKGEN 1187
Query: 136 DLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
PG P L G + P PG AP PG P +PG L G S P P
Sbjct: 1188 GYPGQPGLPGLAGEKGFAGTPGFPGLKGAPGYPGQDGLPGIPG------LKGESGYPGQP 1241
Query: 193 GPSSAPDLPGPS--------------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
G P L G S P GPS AP L G P LPG L G
Sbjct: 1242 GQEGLPGLSGEKGMGGLPGLPGQPGQSIPGPVGPSGAPGLQGKDGFPGLPGQKGESGLNG 1301
Query: 239 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVL 298
AP L G + P PG A PG + P G P +PG P PG +
Sbjct: 1302 LPGAPGLKGDAGLPGFPG---AKGDPGANGIPGKRGDDGLPGVPGRDGQPGAPGLKGEIG 1358
Query: 299 GSYL 302
G+ L
Sbjct: 1359 GAGL 1362
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 114/309 (36%), Gaps = 45/309 (14%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-- 86
+PG AP PG LPG AP L G P PG LPG S P PG
Sbjct: 821 VPGQPGAPGFPGLKGDAGLPGLPGAPGLEGQRGFPGAPGLKGENGLPGLSGQPGYPGEKG 880
Query: 87 -SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
+ P +PG +P PG P +PG LPG L G + A L S AP
Sbjct: 881 DAGLPGVPGREGSPGFPGQDGLPGVPGQKGEDGLPGLPGVTGLKGDAGAAGL---SGAPG 937
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----- 200
LPG P + G + P +PG L S P L GP P +PG P +
Sbjct: 938 LPGAPGYPGMKGNAGIPGVPGFKGDAGL---SGLPGLNGPKGEPGVPGMPGTPGMKGNGG 994
Query: 201 -------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------PSS 241
PGP G GP++ G + P PG PS
Sbjct: 995 LPGLPGRDGLAGIPGPKGDRGFNGLPGEKGEAGPAARDGQKGEAGLPGQPGLRGPAGPSG 1054
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSTVL 298
P +PG LPG P LPG P +PG + AP PG P PG
Sbjct: 1055 LPGVPGIKGDAGLPG-YGQPGLPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPG------ 1107
Query: 299 GSYLGEAGH 307
GEAG+
Sbjct: 1108 --MKGEAGY 1114
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 111/309 (35%), Gaps = 40/309 (12%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-- 77
V +P P PG LPG AP L G P PG LPG S P PG
Sbjct: 821 VPGQPGAPGFPGLKGDAGLPGLPGAPGLEGQRGFPGAPGLKGENGLPGLSGQPGYPGEKG 880
Query: 78 -SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
+ P +PG +P PG P +PG LPG L G + A L S AP
Sbjct: 881 DAGLPGVPGREGSPGFPGQDGLPGVPGQKGEDGLPGLPGVTGLKGDAGAAGL---SGAPG 937
Query: 137 LPGPSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSAPDL-------- 182
LPG P + G + P +PG S P L GP P +PG P +
Sbjct: 938 LPGAPGYPGMKGNAGIPGVPGFKGDAGLSGLPGLNGPKGEPGVPGMPGTPGMKGNGGLPG 997
Query: 183 ----------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------PSSAPD 226
PGP G GP++ G + P PG PS P
Sbjct: 998 LPGRDGLAGIPGPKGDRGFNGLPGEKGEAGPAARDGQKGEAGLPGQPGLRGPAGPSGLPG 1057
Query: 227 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPG 283
+PG LPG P LPG P +PG + AP PG P PG PG
Sbjct: 1058 VPGIKGDAGLPG-YGQPGLPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMKGEAGYPG 1116
Query: 284 PSSAPDLPG 292
P G
Sbjct: 1117 QDGLPGRDG 1125
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 105/278 (37%), Gaps = 19/278 (6%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSA 80
P + LPG P +PG DL G S P LPG AP L G P + G S
Sbjct: 1115 PGQDGLPGRDGLPGVPGMKG--DL-GDSGQPGLPG---APGLDGQPGVPGIRGDKGQSGL 1168
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDL 137
P +PG PG PG P L G + P PG AP PG P +
Sbjct: 1169 PGIPGDRGMDGFPGQKGENGYPGQPGLPGLAGEKGFAGTPGFPGLKGAPGYPGQDGLPGI 1228
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
PG PG LPG S + G P PG S P GPS AP L G
Sbjct: 1229 PGLKGESGYPGQPGQEGLPGLSGEKGMGGLPGLPGQPG-QSIPGPVGPSGAPGLQGKDGF 1287
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDL 254
P LPG L G AP L G + P PG A +PG LPG P
Sbjct: 1288 PGLPGQKGESGLNGLPGAPGLKGDAGLPGFPGAKGDPGANGIPGKRGDDGLPG---VPGR 1344
Query: 255 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G AP L G LPG P LPG LPG
Sbjct: 1345 DGQPGAPGLKGEIGGAGLPGQPGFPGLPGIKGEGGLPG 1382
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 92/256 (35%), Gaps = 19/256 (7%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS 87
G S P +PG PG PG P L G + P PG AP PG
Sbjct: 1164 GQSGLPGIPGDRGMDGFPGQKGENGYPGQPGLPGLAGEKGFAGTPGFPGLKGAPGYPGQD 1223
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
P +PG PG LPG S + G P PG S P GPS AP L
Sbjct: 1224 GLPGIPGLKGESGYPGQPGQEGLPGLSGEKGMGGLPGLPGQPG-QSIPGPVGPSGAPGLQ 1282
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
G P LPG L G AP L G + P PG A PG + P G P
Sbjct: 1283 GKDGFPGLPGQKGESGLNGLPGAPGLKGDAGLPGFPG---AKGDPGANGIPGKRGDDGLP 1339
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
+PG P AP L G LPG P LPG LPG PG
Sbjct: 1340 GVPGRDGQP------GAPGLKGEIGGAGLPGQPGFPGLPGIKGEGGLPG------FPGAK 1387
Query: 268 SAPDLPGPSSAPDLPG 283
P PG AP G
Sbjct: 1388 GEPGFPGSPGAPGYAG 1403
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 104/286 (36%), Gaps = 37/286 (12%)
Query: 22 ERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------- 74
E + P PG P LPG PG PG P + G S P
Sbjct: 719 ENQVNPAPPGQPGLPGLPGTKGESGFPGRPGEVGQPGFPGLPGMKGDSGLPGPPGLPGHP 778
Query: 75 -----PGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
G P LPG +PGP P +PG + PG +PG AP
Sbjct: 779 GVPGDKGFGGVPGLPG------IPGPKGDVGNPGMPGFNGQKGEPGVG----VPGQPGAP 828
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
PG LPG AP L G P PG LPG S P PG LPG
Sbjct: 829 GFPGLKGDAGLPGLPGAPGLEGQRGFPGAPGLKGENGLPGLSGQPGYPGEKGDAGLPG-- 886
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
+PG +P PG P +PG LPG L G + A L S AP LP
Sbjct: 887 ----VPGREGSPGFPGQDGLPGVPGQKGEDGLPGLPGVTGLKGDAGAAGL---SGAPGLP 939
Query: 247 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G P + G + P +PG L S P L GP P +PG
Sbjct: 940 GAPGYPGMKGNAGIPGVPGFKGDAGL---SGLPGLNGPKGEPGVPG 982
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 83/217 (38%), Gaps = 25/217 (11%)
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPS 141
GPS P +PG LPG P LPG P +PG + AP PG P PG
Sbjct: 1051 GPSGLPGVPGIKGDAGLPG-YGQPGLPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMK 1109
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL- 200
PG LPG P +PG DL G S P LPG AP L G P +
Sbjct: 1110 GEAGYPGQDG---LPGRDGLPGVPGMKG--DL-GDSGQPGLPG---APGLDGQPGVPGIR 1160
Query: 201 --PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLP 255
G S P +PG PG PG P L G + P PG AP P
Sbjct: 1161 GDKGQSGLPGIPGDRGMDGFPGQKGENGYPGQPGLPGLAGEKGFAGTPGFPGLKGAPGYP 1220
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G P +PG L G S P PG P L G
Sbjct: 1221 GQDGLPGIPG------LKGESGYPGQPGQEGLPGLSG 1251
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 109/305 (35%), Gaps = 49/305 (16%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSAPDL------ 74
P LPG P + G + P +PG S P L GP P +PG P +
Sbjct: 936 PGLPGAPGYPGMKGNAGIPGVPGFKGDAGLSGLPGLNGPKGEPGVPGMPGTPGMKGNGGL 995
Query: 75 ------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------PSSA 116
PGP G GP++ G + P PG PS
Sbjct: 996 PGLPGRDGLAGIPGPKGDRGFNGLPGEKGEAGPAARDGQKGEAGLPGQPGLRGPAGPSGL 1055
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDL 173
P +PG LPG P LPG P +PG + AP PG P PG
Sbjct: 1056 PGVPGIKGDAGLPG-YGQPGLPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMKGEAGY 1114
Query: 174 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGP 230
PG LPG P +PG DL G S P LPG AP L G P + G
Sbjct: 1115 PGQDG---LPGRDGLPGVPGMKG--DL-GDSGQPGLPG---APGLDGQPGVPGIRGDKGQ 1165
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSA 287
S P +PG PG PG P L G + P PG AP PG
Sbjct: 1166 SGLPGIPGDRGMDGFPGQKGENGYPGQPGLPGLAGEKGFAGTPGFPGLKGAPGYPGQDGL 1225
Query: 288 PDLPG 292
P +PG
Sbjct: 1226 PGIPG 1230
>gi|395745551|ref|XP_002824474.2| PREDICTED: collagen alpha-2(IV) chain [Pongo abelii]
Length = 1862
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 99/286 (34%), Gaps = 29/286 (10%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PGP +PG LPG +P G P +PG P LPGPS P L GP
Sbjct: 809 PGPRGDAGVPGQPGLKGLPGDRGSPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP--- 865
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPD---------LPGPSSAPDLPGPSSAPDLPGP 140
P L G AP GP P +PG P PGP L G G
Sbjct: 866 PGLHGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGE 925
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
P PG +PG P L G +P + G P L G P G + +
Sbjct: 926 RGHPGSPGFKGIDGMPG---TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGI 982
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPD-----------LP 246
PG PG G A LPGP +P LPGP P P
Sbjct: 983 PGLKGLAGEPGFKGFIGPRGSKGAVGLPGPDGSPGPIGLPGPDGLPGERGLPGEVLGAQP 1042
Query: 247 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
GP +PG LPG P G +P + G P L G
Sbjct: 1043 GPRGDAGVPGQPGLKGLPGDRGPPGFRGDRGSPGMDGFQGMPGLKG 1088
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 96/279 (34%), Gaps = 25/279 (8%)
Query: 40 GPSSAPDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 84
G A LPGP LPG PGP +PG LP
Sbjct: 769 GSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLGAQ-PGPRGDAGVPGQPGLKGLP 827
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
G +P G P +PG P LPGPS P L GP P L G AP GP P
Sbjct: 828 GDRGSPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLP 884
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
+PG P G PGP L G G P PG +PG
Sbjct: 885 GIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGERGHPGSPGFKGIDGMPG-- 942
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
P L G +P + G P L G P G + +PG PG
Sbjct: 943 -TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGIPGLKGLAGEPGFKGFIGPR 1001
Query: 265 GPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSTVLGS 300
G A LPGP +P LPGP P G VLG+
Sbjct: 1002 GSKGAVGLPGPDGSPGPIGLPGPDGLPGERGLPGEVLGA 1040
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 96/273 (35%), Gaps = 13/273 (4%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P LPGPS P L GP P L G AP GP P +PG P G PG
Sbjct: 850 QPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDTGAPG 906
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P L G G P PG +PG P L G +P + G P
Sbjct: 907 PVGMKGLSGDRGDAGFTGERGHPGSPGFKGIDGMPG---TPGLKGDRGSPGMDGFQGMPG 963
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPG 202
L G P G + +PG PG G A LPGP +P LPG
Sbjct: 964 LKGRPGFPGSKGEAGFFGIPGLKGLAGEPGFKGFIGPRGSKGAVGLPGPDGSPGPIGLPG 1023
Query: 203 PSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
P P LPG PGP +PG LPG P G +P + G
Sbjct: 1024 PDGLPGERGLPGEVLGAQ-PGPRGDAGVPGQPGLKGLPGDRGPPGFRGDRGSPGMDGFQG 1082
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P L G P G + +PG PG
Sbjct: 1083 MPGLKGRPGFPGSKGEAGFFGIPGLKGLAGEPG 1115
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 85/257 (33%), Gaps = 10/257 (3%)
Query: 15 YLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 74
Y P + P P GP P +PG P G PGP L G
Sbjct: 863 YGPPGLHGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGF 922
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
G P PG +PG P L G +P + G P L G P G +
Sbjct: 923 TGERGHPGSPGFKGIDGMPG---TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGF 979
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAP---DLPGPSSA 188
+PG PG G A LPGP +P LPGP P LPG
Sbjct: 980 FGIPGLKGLAGEPGFKGFIGPRGSKGAVGLPGPDGSPGPIGLPGPDGLPGERGLPGEVLG 1039
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
PGP +PG LPG P G +P + G P L G P G
Sbjct: 1040 AQ-PGPRGDAGVPGQPGLKGLPGDRGPPGFRGDRGSPGMDGFQGMPGLKGRPGFPGSKGE 1098
Query: 249 SSAPDLPGPSSAPDLPG 265
+ +PG PG
Sbjct: 1099 AGFFGIPGLKGLAGEPG 1115
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 88/257 (34%), Gaps = 21/257 (8%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P P L G +PG G PG + + GP P L G + P L
Sbjct: 1250 PGRPGLKGERGTTGIPGLKGFFGEKGTEGDIGFPGITGVTGVQGP---PGLKGQTGFPGL 1306
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
GP P G S LPG PG P PG L G LPG
Sbjct: 1307 TGP---PGSQGESGRIGLPGGKGDDGWPGAPGLPGFPGLRGIRGLHG------LPGTKGF 1357
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG- 202
P PG D P + P A LPGP P G AP GP +P L G
Sbjct: 1358 PGSPGADIHGDPGFPGPPGERGEPGEANTLPGPVGVPGQKGDQGAPGERGPPGSPGLQGF 1417
Query: 203 -----PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
PS+ +PG AP + G PGP + LPG PG AP PG
Sbjct: 1418 PGITPPSNISGVPGDKGAPGIFGLKGYRGPPGPPGSAALPGSKGDTGNPG---APGTPGT 1474
Query: 258 SSAPDLPGPSSAPDLPG 274
GP P + G
Sbjct: 1475 KGWAGDAGPQGRPGVFG 1491
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 96/272 (35%), Gaps = 29/272 (10%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P +PG P + GP PG + P G PG + GP+ D
Sbjct: 1192 PGIPGLPGFPGVAGP------PGITGFPGFIGSRGDKGAPGRAGLYGEIGPTG--DFGDI 1243
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
+LPG P L G +PG G PG + + GP P L
Sbjct: 1244 GDTINLPG---RPGLKGERGTTGIPGLKGFFGEKGTEGDIGFPGITGVTGVQGP---PGL 1297
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
G + P L GP P G S LPG PG AP LPG P L G
Sbjct: 1298 KGQTGFPGLTGP---PGSQGESGRIGLPGGKGDDGWPG---APGLPG---FPGLRGIRGL 1348
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
LPG P PG D P + P A LPGP P G AP GP
Sbjct: 1349 HGLPGTKGFPGSPGADIHGDPGFPGPPGERGEPGEANTLPGPVGVPGQKGDQGAPGERGP 1408
Query: 267 SSAPDLPG------PSSAPDLPGPSSAPDLPG 292
+P L G PS+ +PG AP + G
Sbjct: 1409 PGSPGLQGFPGITPPSNISGVPGDKGAPGIFG 1440
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 86/240 (35%), Gaps = 41/240 (17%)
Query: 16 LPSTVTERPLEPDL--PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 73
L E+ E D+ PG + + GP P L G + P L GP P G S
Sbjct: 1267 LKGFFGEKGTEGDIGFPGITGVTGVQGP---PGLKGQTGFPGLTGP---PGSQGESGRIG 1320
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------------ 121
LPG PG AP LPG P L G LPG P PG
Sbjct: 1321 LPGGKGDDGWPG---APGLPG---FPGLRGIRGLHGLPGTKGFPGSPGADIHGDPGFPGP 1374
Query: 122 ------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------PSSAPDLPGPSS 169
P A LPGP P G AP GP +P L G PS+ +PG
Sbjct: 1375 PGERGEPGEANTLPGPVGVPGQKGDQGAPGERGPPGSPGLQGFPGITPPSNISGVPGDKG 1434
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
AP + G PGP + LPG PG AP PG GP P + G
Sbjct: 1435 APGIFGLKGYRGPPGPPGSAALPGSKGDTGNPG---APGTPGTKGWAGDAGPQGRPGVFG 1491
>gi|153217501|gb|AAI51221.1| COL4A1 protein [Homo sapiens]
Length = 1669
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 111/302 (36%), Gaps = 49/302 (16%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 83
P + G S P LPG AP +PG P S ++ G P PGP AP LPG
Sbjct: 851 PGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDHGF 910
Query: 84 PG---PSSAPDLPGPSSAPDLPGPSSAPDL------------------------------ 110
PG P P L G LPG + D
Sbjct: 911 PGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSRGD 970
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
PG P G + P PGP P + G AP LPGP + P PG P +
Sbjct: 971 PGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 1030
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PGP +P LPG A G + P + P L G + G +P G +
Sbjct: 1031 PGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGIAGFPGSPGEKGEKGS 1086
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
+PG +P L G + PG +P LPG LPG P + G + P PGP
Sbjct: 1087 IGIPGMPGSPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGP 1143
Query: 285 SS 286
+
Sbjct: 1144 TG 1145
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 103/282 (36%), Gaps = 25/282 (8%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D+PGP G P + G S P LPG AP +PG PG + G
Sbjct: 837 DMPGPKGDK---GAQGLPGITGQSGLPGLPGQQGAPGIPG------FPGSKGEMGVMGTP 887
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
P PGP AP LPG PG P P L G LPG + D S
Sbjct: 888 GQPGSPGPVGAPGLPGEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMK 947
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLP 201
G GP G P +PG + P PGP P + G AP LP
Sbjct: 948 GQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLP 1007
Query: 202 GPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
GP + P PG P +PGP +P LPG A G + P + P L
Sbjct: 1008 GPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLR 1063
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
G + G +P G + +PG +P L G +V
Sbjct: 1064 GEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSV 1105
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 94/243 (38%), Gaps = 26/243 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PGP P + G AP LPGP LPG +PG +PGP +P
Sbjct: 985 QPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPG------IPGPQGSPG 1038
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG A G + P + P L G + G +P G + +PG
Sbjct: 1039 LPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPG 1094
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+P L G + PG +P LPG LPG P + G + P PGP+ G
Sbjct: 1095 SPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPT------G 1145
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P+ PG P G P LPG P PG A G PG + +P
Sbjct: 1146 PAGQKGEPGSDGIPGSAGEKGEPGLPG-RGFPGFPG---AKGDKGSKGEVGFPGLAGSPG 1201
Query: 263 LPG 265
+PG
Sbjct: 1202 IPG 1204
>gi|180803|gb|AAA53098.1| alpha-1 type IV collagen [Homo sapiens]
gi|119629514|gb|EAX09109.1| collagen, type IV, alpha 1, isoform CRA_b [Homo sapiens]
Length = 1669
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 111/302 (36%), Gaps = 49/302 (16%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 83
P + G S P LPG AP +PG P S ++ G P PGP AP LPG
Sbjct: 851 PGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDHGF 910
Query: 84 PG---PSSAPDLPGPSSAPDLPGPSSAPDL------------------------------ 110
PG P P L G LPG + D
Sbjct: 911 PGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSRGD 970
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
PG P G + P PGP P + G AP LPGP + P PG P +
Sbjct: 971 PGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 1030
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PGP +P LPG A G + P + P L G + G +P G +
Sbjct: 1031 PGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGIAGFPGSPGEKGEKGS 1086
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
+PG +P L G + PG +P LPG LPG P + G + P PGP
Sbjct: 1087 IGIPGMPGSPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGP 1143
Query: 285 SS 286
+
Sbjct: 1144 TG 1145
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 103/282 (36%), Gaps = 25/282 (8%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D+PGP G P + G S P LPG AP +PG PG + G
Sbjct: 837 DMPGPKGDK---GAQGLPGITGQSGLPGLPGQQGAPGIPG------FPGSKGEMGVMGTP 887
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
P PGP AP LPG PG P P L G LPG + D S
Sbjct: 888 GQPGSPGPVGAPGLPGEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMK 947
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLP 201
G GP G P +PG + P PGP P + G AP LP
Sbjct: 948 GQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLP 1007
Query: 202 GPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
GP + P PG P +PGP +P LPG A G + P + P L
Sbjct: 1008 GPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLR 1063
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
G + G +P G + +PG +P L G +V
Sbjct: 1064 GEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSV 1105
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 94/243 (38%), Gaps = 26/243 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PGP P + G AP LPGP LPG +PG +PGP +P
Sbjct: 985 QPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPG------IPGPQGSPG 1038
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG A G + P + P L G + G +P G + +PG
Sbjct: 1039 LPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPG 1094
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+P L G + PG +P LPG LPG P + G + P PGP+ G
Sbjct: 1095 SPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPT------G 1145
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P+ PG P G P LPG P PG A G PG + +P
Sbjct: 1146 PAGQKGEPGSDGIPGSAGEKGEPGLPG-RGFPGFPG---AKGDKGSKGEVGFPGLAGSPG 1201
Query: 263 LPG 265
+PG
Sbjct: 1202 IPG 1204
>gi|225874|prf||1402236A collagen alpha1(IV)
Length = 1642
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 111/302 (36%), Gaps = 49/302 (16%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 83
P + G S P LPG AP +PG P S ++ G P PGP AP LPG
Sbjct: 824 PGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDHGF 883
Query: 84 PG---PSSAPDLPGPSSAPDLPGPSSAPDL------------------------------ 110
PG P P L G LPG + D
Sbjct: 884 PGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSRGD 943
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
PG P G + P PGP P + G AP LPGP + P PG P +
Sbjct: 944 PGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 1003
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PGP +P LPG A G + P + P L G + G +P G +
Sbjct: 1004 PGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGIAGFPGSPGEKGEKGS 1059
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
+PG +P L G + PG +P LPG LPG P + G + P PGP
Sbjct: 1060 IGIPGMPGSPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGP 1116
Query: 285 SS 286
+
Sbjct: 1117 TG 1118
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 103/282 (36%), Gaps = 25/282 (8%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D+PGP G P + G S P LPG AP +PG PG + G
Sbjct: 810 DMPGPKGDK---GAQGLPGITGQSGLPGLPGQQGAPGIPG------FPGSKGEMGVMGTP 860
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
P PGP AP LPG PG P P L G LPG + D S
Sbjct: 861 GQPGSPGPVGAPGLPGEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMK 920
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLP 201
G GP G P +PG + P PGP P + G AP LP
Sbjct: 921 GQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLP 980
Query: 202 GPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
GP + P PG P +PGP +P LPG A G + P + P L
Sbjct: 981 GPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLR 1036
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
G + G +P G + +PG +P L G +V
Sbjct: 1037 GEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSV 1078
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 94/243 (38%), Gaps = 26/243 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PGP P + G AP LPGP LPG +PG +PGP +P
Sbjct: 958 QPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPG------IPGPQGSPG 1011
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG A G + P + P L G + G +P G + +PG
Sbjct: 1012 LPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPG 1067
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+P L G + PG +P LPG LPG P + G + P PGP+ G
Sbjct: 1068 SPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPT------G 1118
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P+ PG P G P LPG P PG A G PG + +P
Sbjct: 1119 PAGQKGEPGSDGIPGSAGEKGEPGLPG-RGFPGFPG---AKGDKGSKGEVGFPGLAGSPG 1174
Query: 263 LPG 265
+PG
Sbjct: 1175 IPG 1177
>gi|148536825|ref|NP_001836.2| collagen alpha-1(IV) chain preproprotein [Homo sapiens]
gi|125987809|sp|P02462.3|CO4A1_HUMAN RecName: Full=Collagen alpha-1(IV) chain; Contains: RecName:
Full=Arresten; Flags: Precursor
Length = 1669
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 111/302 (36%), Gaps = 49/302 (16%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 83
P + G S P LPG AP +PG P S ++ G P PGP AP LPG
Sbjct: 851 PGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDHGF 910
Query: 84 PG---PSSAPDLPGPSSAPDLPGPSSAPDL------------------------------ 110
PG P P L G LPG + D
Sbjct: 911 PGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSRGD 970
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
PG P G + P PGP P + G AP LPGP + P PG P +
Sbjct: 971 PGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 1030
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PGP +P LPG A G + P + P L G + G +P G +
Sbjct: 1031 PGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGIAGFPGSPGEKGEKGS 1086
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
+PG +P L G + PG +P LPG LPG P + G + P PGP
Sbjct: 1087 IGIPGMPGSPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGP 1143
Query: 285 SS 286
+
Sbjct: 1144 TG 1145
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 103/282 (36%), Gaps = 25/282 (8%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D+PGP G P + G S P LPG AP +PG PG + G
Sbjct: 837 DMPGPKGDK---GAQGLPGITGQSGLPGLPGQQGAPGIPG------FPGSKGEMGVMGTP 887
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
P PGP AP LPG PG P P L G LPG + D S
Sbjct: 888 GQPGSPGPVGAPGLPGEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMK 947
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLP 201
G GP G P +PG + P PGP P + G AP LP
Sbjct: 948 GQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLP 1007
Query: 202 GPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
GP + P PG P +PGP +P LPG A G + P + P L
Sbjct: 1008 GPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLR 1063
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
G + G +P G + +PG +P L G +V
Sbjct: 1064 GEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSV 1105
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 94/243 (38%), Gaps = 26/243 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PGP P + G AP LPGP LPG +PG +PGP +P
Sbjct: 985 QPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPG------IPGPQGSPG 1038
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG A G + P + P L G + G +P G + +PG
Sbjct: 1039 LPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPG 1094
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+P L G + PG +P LPG LPG P + G + P PGP+ G
Sbjct: 1095 SPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPT------G 1145
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P+ PG P G P LPG P PG A G PG + +P
Sbjct: 1146 PAGQKGEPGSDGIPGSAGEKGEPGLPG-RGFPGFPG---AKGDKGSKGEVGFPGLAGSPG 1201
Query: 263 LPG 265
+PG
Sbjct: 1202 IPG 1204
>gi|28703797|gb|AAH47305.1| COL4A1 protein, partial [Homo sapiens]
Length = 1075
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 111/302 (36%), Gaps = 49/302 (16%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 83
P + G S P LPG AP +PG P S ++ G P PGP AP LPG
Sbjct: 257 PGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDHGF 316
Query: 84 PG---PSSAPDLPGPSSAPDLPGPSSAPDL------------------------------ 110
PG P P L G LPG + D
Sbjct: 317 PGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSRGD 376
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
PG P G + P PGP P + G AP LPGP + P PG P +
Sbjct: 377 PGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 436
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PGP +P LPG A G + P + P L G + G +P G +
Sbjct: 437 PGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGIAGFPGSPGEKGEKGS 492
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
+PG +P L G + PG +P LPG LPG P + G + P PGP
Sbjct: 493 IGIPGMPGSPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGP 549
Query: 285 SS 286
+
Sbjct: 550 TG 551
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 103/282 (36%), Gaps = 25/282 (8%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D+PGP G P + G S P LPG AP +PG PG + G
Sbjct: 243 DMPGPKGDK---GAQGLPGITGQSGLPGLPGQQGAPGIPG------FPGSKGEMGVMGTP 293
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
P PGP AP LPG PG P P L G LPG + D S
Sbjct: 294 GQPGSPGPVGAPGLPGEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMK 353
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLP 201
G GP G P +PG + P PGP P + G AP LP
Sbjct: 354 GQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLP 413
Query: 202 GPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
GP + P PG P +PGP +P LPG A G + P + P L
Sbjct: 414 GPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLR 469
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
G + G +P G + +PG +P L G +V
Sbjct: 470 GEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSV 511
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 94/243 (38%), Gaps = 26/243 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PGP P + G AP LPGP LPG +PG +PGP +P
Sbjct: 391 QPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPG------IPGPQGSPG 444
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG A G + P + P L G + G +P G + +PG
Sbjct: 445 LPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPG 500
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+P L G + PG +P LPG LPG P + G + P PGP+ G
Sbjct: 501 SPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPT------G 551
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P+ PG P G P LPG P PG A G PG + +P
Sbjct: 552 PAGQKGEPGSDGIPGSAGEKGEPGLPG-RGFPGFPG---AKGDKGSKGEVGFPGLAGSPG 607
Query: 263 LPG 265
+PG
Sbjct: 608 IPG 610
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 104/317 (32%), Gaps = 66/317 (20%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPG------------------ 67
LPG P LPG P G P +PG A P L G
Sbjct: 144 LPGLKGLPGLPGIPGTPGEKGSIGVPGVPGEHGAIGPPGLQGIRGEPGPPGLPGSVGSPG 203
Query: 68 --------------------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 107
S P + G P PG D+PGP G
Sbjct: 204 VPGIGPPGARGPPGGQGPPGLSGPPGIKGEKGFPGFPG----LDMPGPKGD---KGAQGL 256
Query: 108 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 167
P + G S P LPG AP +PG PG + G P PGP AP LPG
Sbjct: 257 PGITGQSGLPGLPGQQGAPGIPG------FPGSKGEMGVMGTPGQPGSPGPVGAPGLPGE 310
Query: 168 SSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
P GP P L G LPG + D S G GP
Sbjct: 311 KGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGE 370
Query: 225 PDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGP 275
G P +PG + P PGP P + G AP LPGP + P PG
Sbjct: 371 KGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGE 430
Query: 276 SSAPDLPGPSSAPDLPG 292
P +PGP +P LPG
Sbjct: 431 KGVPGIPGPQGSPGLPG 447
>gi|296221504|ref|XP_002756773.1| PREDICTED: probable G-protein coupled receptor 123, partial
[Callithrix jacchus]
Length = 703
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 129/284 (45%), Gaps = 22/284 (7%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--L 83
E +P P S +P +P+ P P S +P P S +P S + PS +P+ +
Sbjct: 32 ESRVPSPESESRVP----SPECPSPES--RVPSPESESRVPSQSPKSESRVPSRSPESRV 85
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLPGPSSAPD--LPG 139
P P S +P S + PS +P+ PS +P+ PS +P+ PS +P+ +P
Sbjct: 86 PSPESESRVPSQSPKSESRVPSRSPESHVPSQSPESESRVPSQSPESRVPSQSPESRVPS 145
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLPGPSSA 197
P S +P P S +P S + PS +P+ PS +P+ PS +P+ PS
Sbjct: 146 PESESRVPSPESESRVPSQSPKSESRVPSRSPESHVPSQSPESESRVPSQSPESRVPSPE 205
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP--GPSSAPDLP 255
+P P S +P P S +P P S +P P S +P P S +P P S +P
Sbjct: 206 SRVPSPESRVRVPSPESESRVPSPESESRVPSPESESRVPSPESESRVPSQSPESESRVP 265
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSTV 297
P S PS +P+ PS +P+ +P P S +P P S
Sbjct: 266 SPESR----VPSQSPESRVPSQSPESRVPSPESRVRVPSPESKC 305
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 112/252 (44%), Gaps = 19/252 (7%)
Query: 55 DLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 113
+P P S +P S + P S +P P S +P +P+ P P S +P P
Sbjct: 6 RVPSPESESRVPSQSPESESRVEPESESRVPSPESESRVP----SPECPSPES--RVPSP 59
Query: 114 SSAPDLPGPSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
S +P S + PS +P+ +P P S +P S + PS +P+ PS +P
Sbjct: 60 ESESRVPSQSPKSESRVPSRSPESRVPSPESESRVPSQSPKSESRVPSRSPESHVPSQSP 119
Query: 172 DLPG--PSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 227
+ PS +P+ PS +P+ +P P S +P P S +P S + PS +P+
Sbjct: 120 ESESRVPSQSPESRVPSQSPESRVPSPESESRVPSPESESRVPSQSPKSESRVPSRSPES 179
Query: 228 PGPSSAPD----LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
PS +P+ +P S +P P S +P P S +P P S +P P S +P
Sbjct: 180 HVPSQSPESESRVPSQSPESRVPSPES--RVPSPESRVRVPSPESESRVPSPESESRVPS 237
Query: 284 PSSAPDLPGPSS 295
P S +P P S
Sbjct: 238 PESESRVPSPES 249
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 93/205 (45%), Gaps = 12/205 (5%)
Query: 18 STVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDLP 75
S V R E +P S + PS +P+ PS +P+ +P P S +P P S +P
Sbjct: 103 SRVPSRSPESHVPSQSPESESRVPSQSPESRVPSQSPESRVPSPESESRVPSPESESRVP 162
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
S + PS +P+ PS +P+ PS +P+ PS +P P S +P P S
Sbjct: 163 SQSPKSESRVPSRSPESHVPSQSPESESRVPSQSPESRVPSPESRVPSPESRVRVPSPES 222
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 191
+P P S +P P S +P P S +P P S +P P S PS +P+
Sbjct: 223 ESRVPSPESESRVPSPESESRVPSPESESRVPSQSPESESRVPSPESR----VPSQSPES 278
Query: 192 PGPSSAPD--LPGPSSAPDLPGPSS 214
PS +P+ +P P S +P P S
Sbjct: 279 RVPSQSPESRVPSPESRVRVPSPES 303
>gi|297274817|ref|XP_001088660.2| PREDICTED: collagen alpha-1(IV) chain [Macaca mulatta]
Length = 1607
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 106/293 (36%), Gaps = 23/293 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPG 76
V P +P PGP P LPG PG P P L G LPG + D
Sbjct: 883 VMGTPGQPGSPGPVGVPGLPGEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVD 942
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSS 133
S G GP G P +PG + P PGP P + G
Sbjct: 943 MGSMKGQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPG 1002
Query: 134 APDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-----APDL 182
AP LPGP + P PG P +PGP +P L G A G + P L
Sbjct: 1003 APGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLQGEKGAKGAKGQAGPPGIGIPGL 1062
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
PG + G +P G + +PG +P L G + PG +P LPG
Sbjct: 1063 PGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSVGYPG---SPGLPGEKGD 1119
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P + G + P PGP+ PG P G P LPG
Sbjct: 1120 KGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPG 1172
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 103/285 (36%), Gaps = 31/285 (10%)
Query: 28 DLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
D+PGP P + G S P LPG +P +PG PG + G P
Sbjct: 837 DMPGPKGDKGSQGLPGVTGQSGLPGLPGQQGSPGIPG------FPGSKGEMGVMGTPGQP 890
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
PGP P LPG PG S GP P L G LPG + D
Sbjct: 891 GSPGPVGVPGLPGEKGDHGFPGSS------GPRGDPGLKGDKGDVGLPGKPGSMDKVDMG 944
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAP 198
S G GP G P +PG + P PGP P + G AP
Sbjct: 945 SMKGQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAP 1004
Query: 199 DLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
LPGP + P PG P +PGP +P L G A G + P + P
Sbjct: 1005 GLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLQGEKGAKGAKGQAGPPGI----GIP 1060
Query: 253 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
LPG + G +P G + +PG +P L G +V
Sbjct: 1061 GLPGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSV 1105
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 108/290 (37%), Gaps = 42/290 (14%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSS 79
+P PGP P + G AP LPGP + P PG P +PGP +P L G
Sbjct: 985 QPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLQGEKG 1044
Query: 80 APDLPGPSS-----APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSS 133
A G + P LPG + G +P G + +PG +P L G P S
Sbjct: 1045 AKGAKGQAGPPGIGIPGLPGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGS 1104
Query: 134 -----APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGP 185
+P LPG LPG P + G + P PGP+ PG P G
Sbjct: 1105 VGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSAGE 1164
Query: 186 SSAPDLPGPSSAPDLPGPSS------------APDLPGPSSAPDLPGPSSAPDLPGPSSA 233
P LPG P PG P + G PG AP +PGP
Sbjct: 1165 KGEPGLPG-RGFPGFPGAKGDKGLPGPMGPPGLPGIDGVKGDKGNPGWPGAPGVPGPKGD 1223
Query: 234 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
P G +PG +P + G S D+ GP P GP P L G
Sbjct: 1224 PGFQG------MPGIGGSPGITG--SKGDM-GPPGVPGFQGPKGVPGLQG 1264
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 91/258 (35%), Gaps = 55/258 (21%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSS-----APDLPGPSSAPDLPGPSS 70
LP T E+ + P +PGP +P L G A G + P LPG + G
Sbjct: 1018 LPGTPGEKGV-PGIPGPQGSPGLQGEKGAKGAKGQAGPPGIGIPGLPGEKGDQGIAGFPG 1076
Query: 71 APDLPGPSSAPDLPGPSSAPDLPG-PSS-----APDLPGPSSAPDLPGPSSAPDLPGPSS 124
+P G + +PG +P L G P S +P LPG LPG P + G +
Sbjct: 1077 SPGEKGEKGSIGIPGMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAG 1136
Query: 125 APDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS------------ 169
P PGP+ PG P G P LPG P PG
Sbjct: 1137 LPGTPGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPG-RGFPGFPGAKGDKGLPGPMGPPG 1195
Query: 170 ------------------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
AP +PGP P G +PG +P + G S D+ G
Sbjct: 1196 LPGIDGVKGDKGNPGWPGAPGVPGPKGDPGFQG------MPGIGGSPGITG--SKGDM-G 1246
Query: 212 PSSAPDLPGPSSAPDLPG 229
P P GP P L G
Sbjct: 1247 PPGVPGFQGPKGVPGLQG 1264
>gi|355701098|gb|EHH29119.1| Collagen alpha-1(IV) chain, partial [Macaca mulatta]
Length = 1645
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 106/293 (36%), Gaps = 23/293 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPG 76
V P +P PGP P LPG PG P P L G LPG + D
Sbjct: 859 VMGTPGQPGSPGPVGVPGLPGEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVD 918
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSS 133
S G GP G P +PG + P PGP P + G
Sbjct: 919 MGSMKGQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPG 978
Query: 134 APDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-----APDL 182
AP LPGP + P PG P +PGP +P L G A G + P L
Sbjct: 979 APGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLQGEKGAKGAKGQAGPPGIGIPGL 1038
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
PG + G +P G + +PG +P L G + PG +P LPG
Sbjct: 1039 PGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSVGYPG---SPGLPGEKGD 1095
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P + G + P PGP+ PG P G P LPG
Sbjct: 1096 KGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPG 1148
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 94/247 (38%), Gaps = 24/247 (9%)
Query: 57 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 110
PG P G + P PGP P + G AP LPGP + P PG P +
Sbjct: 947 PGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 1006
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
PGP +P L G A G + P + P LPG + G +P G +
Sbjct: 1007 PGPQGSPGLQGEKGAKGAKGQAGPPGI----GIPGLPGEKGDQGIAGFPGSPGEKGEKGS 1062
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
+PG +P L G + PG +P LPG LPG P + G + P PGP
Sbjct: 1063 IGIPGMPGSPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGP 1119
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-----SAPDLPGPSSAPDLPGPS 285
+ GP+ PG P G P LPG A G PG +
Sbjct: 1120 T------GPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKGSKGEVGFPGLA 1173
Query: 286 SAPDLPG 292
+P +PG
Sbjct: 1174 GSPGIPG 1180
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 103/285 (36%), Gaps = 31/285 (10%)
Query: 28 DLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
D+PGP P + G S P LPG +P +PG PG + G P
Sbjct: 813 DMPGPKGDKGSQGLPGVTGQSGLPGLPGQQGSPGIPG------FPGSKGEMGVMGTPGQP 866
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
PGP P LPG PG S GP P L G LPG + D
Sbjct: 867 GSPGPVGVPGLPGEKGDHGFPGSS------GPRGDPGLKGDKGDVGLPGKPGSMDKVDMG 920
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAP 198
S G GP G P +PG + P PGP P + G AP
Sbjct: 921 SMKGQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAP 980
Query: 199 DLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
LPGP + P PG P +PGP +P L G A G + P + P
Sbjct: 981 GLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLQGEKGAKGAKGQAGPPGI----GIP 1036
Query: 253 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
LPG + G +P G + +PG +P L G +V
Sbjct: 1037 GLPGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSV 1081
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 94/243 (38%), Gaps = 26/243 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PGP P + G AP LPGP LPG +PG +PGP +P
Sbjct: 961 QPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPG------IPGPQGSPG 1014
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
L G A G + P + P LPG + G +P G + +PG
Sbjct: 1015 LQGEKGAKGAKGQAGPPGI----GIPGLPGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPG 1070
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+P L G + PG +P LPG LPG P + G + P PGP+ G
Sbjct: 1071 SPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPT------G 1121
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P+ PG P G P LPG P PG A G PG + +P
Sbjct: 1122 PAGQKGEPGSDGIPGSAGEKGEPGLPG-RGFPGFPG---AKGDKGSKGEVGFPGLAGSPG 1177
Query: 263 LPG 265
+PG
Sbjct: 1178 IPG 1180
>gi|348531062|ref|XP_003453029.1| PREDICTED: collagen alpha-1(X) chain-like isoform 1 [Oreochromis
niloticus]
Length = 662
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 112/303 (36%), Gaps = 34/303 (11%)
Query: 19 TVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSS------APDLPGPS--SAPDLPGPSS 70
T +P P PG S AP PG P GP P PGPS SA PGPS
Sbjct: 92 TQAGKPGVPGSPGKSGAPGKPGERGQPGATGPMGHRGAPGTPGSPGPSGLSAVGKPGPSG 151
Query: 71 APDLPGPSSAPDLPGPSSAPDLPGPSSA-----PDLPGPSSAPDLPGPSSAPDLPGPSS- 124
P GP P L G P +PGP P + GP+ GPS P PG
Sbjct: 152 IPGAMGPRGEPGLKGHPGIPGVPGPKGERGIGIPGVQGPAGPVGPMGPSGMPGKPGIGKP 211
Query: 125 -APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPD 181
A PG P PG +P G S GP + AP PG + P +PGP
Sbjct: 212 GATGYPGEPGKPGEPGRDGSPGPMGVSGPKGHTGPPGTGAPGKPGQNGTPGMPGPMGVKG 271
Query: 182 LPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
GP+ P PG + P +PG AP PG + PGP+ PG +
Sbjct: 272 PQGPAGQPGSPGMPGVGKTGEPGIPGSRGAPGSPGTTGQKGEPGPTGFTGQPGATGPMGP 331
Query: 237 PGPSSAPDLPGPSS------------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
GP A G + AP G G + P PG P +PG
Sbjct: 332 AGPQGARGFQGEAGPVGPKGDIGMVGAPGPRGTKGEQGAQGFTGKPGTPGAVGPPGIPGH 391
Query: 285 SSA 287
+ A
Sbjct: 392 NGA 394
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 103/264 (39%), Gaps = 23/264 (8%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS--SAPDLPGPSS 97
P PG S AP PG P GP AP PG PGPS SA PGPS
Sbjct: 98 GVPGSPGKSGAPGKPGERGQPGATGPMGHRGAPGTPGS------PGPSGLSAVGKPGPSG 151
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
P GP P L G P +PGP + P + GP+ GPS P PG
Sbjct: 152 IPGAMGPRGEPGLKGHPGIPGVPGPKGERGI----GIPGVQGPAGPVGPMGPSGMPGKPG 207
Query: 158 PS--SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPS 213
A PG P PG +P G S GP + AP PG + P +PGP
Sbjct: 208 IGKPGATGYPGEPGKPGEPGRDGSPGPMGVSGPKGHTGPPGTGAPGKPGQNGTPGMPGPM 267
Query: 214 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 273
GP+ P PG P + G + P +PG AP PG + PGP+ P
Sbjct: 268 GVKGPQGPAGQPGSPG---MPGV-GKTGEPGIPGSRGAPGSPGTTGQKGEPGPTGFTGQP 323
Query: 274 GPSSAPDLPGPSSAPDLPGPSSTV 297
G + GP A G + V
Sbjct: 324 GATGPMGPAGPQGARGFQGEAGPV 347
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 107/303 (35%), Gaps = 67/303 (22%)
Query: 24 PLEPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP------ 75
P P PGPS SA PGPS P GP P L G P +PGP +
Sbjct: 130 PGTPGSPGPSGLSAVGKPGPSGIPGAMGPRGEPGLKGHPGIPGVPGPKGERGIGIPGVQG 189
Query: 76 --------GPSSAPDLPGPSS--APDLPGPSSAPDLPGPSSAPD---LPGP--------S 114
GPS P PG A PG P PG +P + GP +
Sbjct: 190 PAGPVGPMGPSGMPGKPGIGKPGATGYPGEPGKPGEPGRDGSPGPMGVSGPKGHTGPPGT 249
Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSS 169
AP PG + P +PGP GP+ P PG + P +PG AP PG +
Sbjct: 250 GAPGKPGQNGTPGMPGPMGVKGPQGPAGQPGSPGMPGVGKTGEPGIPGSRGAPGSPGTTG 309
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------------------PGP-------- 203
PGP+ PG + GP A PGP
Sbjct: 310 QKGEPGPTGFTGQPGATGPMGPAGPQGARGFQGEAGPVGPKGDIGMVGAPGPRGTKGEQG 369
Query: 204 ----SSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ P PG P +PG + A G + AP LPG + A G + AP PG
Sbjct: 370 AQGFTGKPGTPGAVGPPGIPGHNGAQGPKGSQGHAGAPGLPGINGAQGPKGHTGAPGAPG 429
Query: 257 PSS 259
S
Sbjct: 430 KSG 432
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 89/228 (39%), Gaps = 16/228 (7%)
Query: 21 TERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
T P EP PG PGP + GP PG + AP PG + P +PGP
Sbjct: 214 TGYPGEPGKPGEPGRDGSPGPMG---VSGPKGHTGPPG-TGAPGKPGQNGTPGMPGPMGV 269
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
GP+ P PG P + G + P +PG AP PG + PGP+ PG
Sbjct: 270 KGPQGPAGQPGSPG---MPGV-GKTGEPGIPGSRGAPGSPGTTGQKGEPGPTGFTGQPGA 325
Query: 141 SSAPDLPGPSSAPDLPGPSS----APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
+ GP A G + D+ G AP G G + P PG
Sbjct: 326 TGPMGPAGPQGARGFQGEAGPVGPKGDI-GMVGAPGPRGTKGEQGAQGFTGKPGTPGAVG 384
Query: 197 APDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
P +PG + A G + AP LPG + A G + AP PG S
Sbjct: 385 PPGIPGHNGAQGPKGSQGHAGAPGLPGINGAQGPKGHTGAPGAPGKSG 432
>gi|355754805|gb|EHH58706.1| Collagen alpha-1(IV) chain, partial [Macaca fascicularis]
Length = 1645
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 106/293 (36%), Gaps = 23/293 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPG 76
V P +P PGP P LPG PG P P L G LPG + D
Sbjct: 859 VMGTPGQPGSPGPVGVPGLPGEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVD 918
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSS 133
S G GP G P +PG + P PGP P + G
Sbjct: 919 MGSMKGQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPG 978
Query: 134 APDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-----APDL 182
AP LPGP + P PG P +PGP +P L G A G + P L
Sbjct: 979 APGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLQGEKGAKGAKGQAGPPGIGIPGL 1038
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
PG + G +P G + +PG +P L G + PG +P LPG
Sbjct: 1039 PGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSVGYPG---SPGLPGEKGD 1095
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P + G + P PGP+ PG P G P LPG
Sbjct: 1096 KGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPG 1148
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 94/247 (38%), Gaps = 24/247 (9%)
Query: 57 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 110
PG P G + P PGP P + G AP LPGP + P PG P +
Sbjct: 947 PGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 1006
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
PGP +P L G A G + P + P LPG + G +P G +
Sbjct: 1007 PGPQGSPGLQGEKGAKGAKGQAGPPGI----GIPGLPGEKGDQGIAGFPGSPGEKGEKGS 1062
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
+PG +P L G + PG +P LPG LPG P + G + P PGP
Sbjct: 1063 IGIPGMPGSPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGP 1119
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-----SAPDLPGPSSAPDLPGPS 285
+ GP+ PG P G P LPG A G PG +
Sbjct: 1120 T------GPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKGSKGEVGFPGLA 1173
Query: 286 SAPDLPG 292
+P +PG
Sbjct: 1174 GSPGIPG 1180
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 103/285 (36%), Gaps = 31/285 (10%)
Query: 28 DLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
D+PGP P + G S P LPG +P +PG PG + G P
Sbjct: 813 DMPGPKGDKGSQGLPGVTGQSGLPGLPGQQGSPGIPG------FPGSKGEMGVMGTPGQP 866
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
PGP P LPG PG S GP P L G LPG + D
Sbjct: 867 GSPGPVGVPGLPGEKGDHGFPGSS------GPRGDPGLKGDKGDVGLPGKPGSMDKVDMG 920
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAP 198
S G GP G P +PG + P PGP P + G AP
Sbjct: 921 SMKGQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAP 980
Query: 199 DLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
LPGP + P PG P +PGP +P L G A G + P + P
Sbjct: 981 GLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLQGEKGAKGAKGQAGPPGI----GIP 1036
Query: 253 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
LPG + G +P G + +PG +P L G +V
Sbjct: 1037 GLPGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSV 1081
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 94/243 (38%), Gaps = 26/243 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PGP P + G AP LPGP LPG +PG +PGP +P
Sbjct: 961 QPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPG------IPGPQGSPG 1014
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
L G A G + P + P LPG + G +P G + +PG
Sbjct: 1015 LQGEKGAKGAKGQAGPPGI----GIPGLPGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPG 1070
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+P L G + PG +P LPG LPG P + G + P PGP+ G
Sbjct: 1071 SPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPT------G 1121
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P+ PG P G P LPG P PG A G PG + +P
Sbjct: 1122 PAGQKGEPGSDGIPGSAGEKGEPGLPG-RGFPGFPG---AKGDKGSKGEVGFPGLAGSPG 1177
Query: 263 LPG 265
+PG
Sbjct: 1178 IPG 1180
Score = 38.1 bits (87), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 111/339 (32%), Gaps = 84/339 (24%)
Query: 20 VTERPLEPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--- 70
++ P P LPGP + P PG P +PGP +P L G A G +
Sbjct: 973 ISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLQGEKGAKGAKGQAGPPG 1032
Query: 71 --APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSS-----APDLPGP 122
P LPG + G +P G + +PG +P L G P S +P LPG
Sbjct: 1033 IGIPGLPGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSVGYPGSPGLPGE 1092
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPS-- 177
LPG P + G + P PGP+ PG P G P LPG
Sbjct: 1093 KGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFP 1152
Query: 178 ---SAPDLPGPSSAPDLPGPSSAPDLPG----------------------PSSAPDLP-- 210
A G PG + +P +PG P A + P
Sbjct: 1153 GFPGAKGDKGSKGEVGFPGLAGSPGIPGSKGEQGFMGPPGPQGQPGLPGSPGHATEGPKG 1212
Query: 211 --------------------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
G PG AP +PGP P G
Sbjct: 1213 DRGPQGQPGLPGLPGPMGPPGLPGIDGVKGDKGNPGWPGAPGVPGPKGDPGFQG------ 1266
Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
+PG +P + G S D+ GP P GP P L G
Sbjct: 1267 MPGIGGSPGITG--SKGDM-GPPGVPGFQGPKGVPGLQG 1302
>gi|406671056|ref|ZP_11078299.1| hypothetical protein HMPREF9706_00559 [Facklamia hominis CCUG
36813]
gi|405581361|gb|EKB55391.1| hypothetical protein HMPREF9706_00559 [Facklamia hominis CCUG
36813]
Length = 1034
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 106/299 (35%), Gaps = 43/299 (14%)
Query: 39 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 98
PG S + D P + PG S + D P P S + D P P G S
Sbjct: 639 PGQSDSQDQKQPDQSGQQPGQSGSKDQQKPDQPGQKPNQSGSKDQPKPDQPGQKLGQSGT 698
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPS---------------------------SAPDLPGP 131
D P+ PG S + D P P ++ D P
Sbjct: 699 KDQQKPNQLGQKPGQSGSKDQPKPDQPGQKPGQSDSQDQQQPDQLGQKPSQPNSKDQQKP 758
Query: 132 SSAPDLPGPSSAPD-----LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
+ + PG S + D PG S + D P + PG S + D P+ + PG S
Sbjct: 759 NQSGQKPGQSGSKDQQKPAQPGQSGSKDQQKPDQSGQKPGQSGSKDQQKPNQSGQKPGQS 818
Query: 187 -----SAPDLP----GPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 235
S PD P G S + D P S + D P+ + PG + D P
Sbjct: 819 GSKDQSQPDQPDQKLGQSDSQDQKQPDQSGSKDQQKPNQSGQKPGQPGSKDQQKPDKPGQ 878
Query: 236 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
PG S + D P P+ PG S + D P P PG S + D P+ + PG S
Sbjct: 879 TPGQSGSKDQPKPNQPSQKPGQSDSKDQPKPDQPGQKPGQSGSKDQQKPNQSGQKPGQS 937
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 102/255 (40%), Gaps = 18/255 (7%)
Query: 52 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 111
++ D P+ + PG S + D P+ PG S + D P + PG S + D
Sbjct: 751 NSKDQQKPNQSGQKPGQSGSKDQQKPAQ----PGQSGSKDQQKPDQSGQKPGQSGSKDQQ 806
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLP----GPSSAPDLPGP--SSAPDLPGPSSAPDLP 165
P+ + PG S + D S PD P G S + D P S + D P+ + P
Sbjct: 807 KPNQSGQKPGQSGSKD----QSQPDQPDQKLGQSDSQDQKQPDQSGSKDQQKPNQSGQKP 862
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
G + D P PG S + D P P+ PG S + D P P PG S +
Sbjct: 863 GQPGSKDQQKPDKPGQTPGQSGSKDQPKPNQPSQKPGQSDSKDQPKPDQPGQKPGQSGSK 922
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPG 283
D P+ + PG S + D P P PG S + D P S + D P PG
Sbjct: 923 DQQKPNQSGQKPGQSGSKDQPQPDQPDQKPGQSDSQDQKQPDQSGSKDQQKPDQPGQKPG 982
Query: 284 PSSAPDL--PGPSST 296
S + D PG SS
Sbjct: 983 QSGSKDQQKPGQSSK 997
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 108/293 (36%), Gaps = 39/293 (13%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS------------------SAP 72
G S D P+ PG S + D P P PG S ++
Sbjct: 694 GQSGTKDQQKPNQLGQKPGQSGSKDQPKPDQPGQKPGQSDSQDQQQPDQLGQKPSQPNSK 753
Query: 73 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
D P+ + PG S + D P+ PG S + D P + PG S + D P+
Sbjct: 754 DQQKPNQSGQKPGQSGSKDQQKPAQ----PGQSGSKDQQKPDQSGQKPGQSGSKDQQKPN 809
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLP----GPSSAPDLPGP--SSAPDLPGPSSAPDLPGPS 186
+ PG S + D S PD P G S + D P S + D P+ + PG
Sbjct: 810 QSGQKPGQSGSKD----QSQPDQPDQKLGQSDSQDQKQPDQSGSKDQQKPNQSGQKPGQP 865
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
+ D P PG S + D P P+ PG S + D P P PG S + D
Sbjct: 866 GSKDQQKPDKPGQTPGQSGSKDQPKPNQPSQKPGQSDSKDQPKPDQPGQKPGQSGSKDQQ 925
Query: 247 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-------SSAPDLPG 292
P+ + PG S + D P P PG S + D P PD PG
Sbjct: 926 KPNQSGQKPGQSGSKDQPQPDQPDQKPGQSDSQDQKQPDQSGSKDQQKPDQPG 978
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 91/243 (37%), Gaps = 14/243 (5%)
Query: 57 PGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 114
PG S + D P P S + D P PG S + D P + PG S + D P
Sbjct: 610 PGQSDSKDQPKPDQSDSKDQQKPDQPSQKPGQSDSQDQKQPDQSGQQPGQSGSKDQQKPD 669
Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
P S + D P P G S D P+ PG S + D P P P
Sbjct: 670 QPGQKPNQSGSKDQPKPDQPGQKLGQSGTKDQQKPNQLGQKPGQSGSKDQPKPDQPGQKP 729
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G S + D P P ++ D P+ + PG S + D P+ PG S +
Sbjct: 730 GQSDSQDQQQPDQLGQKPSQPNSKDQQKPNQSGQKPGQSGSKDQQKPAQ----PGQSGSK 785
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----GPSSAPDL 290
D P + PG S + D P+ + PG S + D S PD P G S + D
Sbjct: 786 DQQKPDQSGQKPGQSGSKDQQKPNQSGQKPGQSGSKD----QSQPDQPDQKLGQSDSQDQ 841
Query: 291 PGP 293
P
Sbjct: 842 KQP 844
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 109/318 (34%), Gaps = 37/318 (11%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA----PDLP-- 66
D L V +R + + P PG + PG + D P P PD P
Sbjct: 509 VDILEEAVADRKIVGTKDVAAQEPKHPGLDQSDKNPGKPDSSDTPSPGQQPGETPDNPGT 568
Query: 67 GPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPD 118
G P+ PG P PG S + D P PG S + D P P S + D
Sbjct: 569 GEQEKPNQPGSKDQPQPDQPDQKPGQSDSKDQQQPDQPGQKPGQSDSKDQPKPDQSDSKD 628
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
P PG S + D P + PG S + D P P S + D P P
Sbjct: 629 QQKPDQPSQKPGQSDSQDQKQPDQSGQQPGQSGSKDQQKPDQPGQKPNQSGSKDQPKPDQ 688
Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---------------- 222
G S D P+ PG S + D P P PG S
Sbjct: 689 PGQKLGQSGTKDQQKPNQLGQKPGQSGSKDQPKPDQPGQKPGQSDSQDQQQPDQLGQKPS 748
Query: 223 --SAPDLPGPSSAPDLPGPSSAPD-----LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 275
++ D P+ + PG S + D PG S + D P + PG S + D P
Sbjct: 749 QPNSKDQQKPNQSGQKPGQSGSKDQQKPAQPGQSGSKDQQKPDQSGQKPGQSGSKDQQKP 808
Query: 276 SSAPDLPGPSSAPDLPGP 293
+ + PG S + D P
Sbjct: 809 NQSGQKPGQSGSKDQSQP 826
>gi|348531064|ref|XP_003453030.1| PREDICTED: collagen alpha-1(X) chain-like isoform 2 [Oreochromis
niloticus]
Length = 656
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 112/303 (36%), Gaps = 34/303 (11%)
Query: 19 TVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSS------APDLPGPS--SAPDLPGPSS 70
T +P P PG S AP PG P GP P PGPS SA PGPS
Sbjct: 86 TQAGKPGVPGSPGKSGAPGKPGERGQPGATGPMGHRGAPGTPGSPGPSGLSAVGKPGPSG 145
Query: 71 APDLPGPSSAPDLPGPSSAPDLPGPSSA-----PDLPGPSSAPDLPGPSSAPDLPGPSS- 124
P GP P L G P +PGP P + GP+ GPS P PG
Sbjct: 146 IPGAMGPRGEPGLKGHPGIPGVPGPKGERGIGIPGVQGPAGPVGPMGPSGMPGKPGIGKP 205
Query: 125 -APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPD 181
A PG P PG +P G S GP + AP PG + P +PGP
Sbjct: 206 GATGYPGEPGKPGEPGRDGSPGPMGVSGPKGHTGPPGTGAPGKPGQNGTPGMPGPMGVKG 265
Query: 182 LPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
GP+ P PG + P +PG AP PG + PGP+ PG +
Sbjct: 266 PQGPAGQPGSPGMPGVGKTGEPGIPGSRGAPGSPGTTGQKGEPGPTGFTGQPGATGPMGP 325
Query: 237 PGPSSAPDLPGPSS------------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
GP A G + AP G G + P PG P +PG
Sbjct: 326 AGPQGARGFQGEAGPVGPKGDIGMVGAPGPRGTKGEQGAQGFTGKPGTPGAVGPPGIPGH 385
Query: 285 SSA 287
+ A
Sbjct: 386 NGA 388
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 103/264 (39%), Gaps = 23/264 (8%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS--SAPDLPGPSS 97
P PG S AP PG P GP AP PG PGPS SA PGPS
Sbjct: 92 GVPGSPGKSGAPGKPGERGQPGATGPMGHRGAPGTPGS------PGPSGLSAVGKPGPSG 145
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
P GP P L G P +PGP + P + GP+ GPS P PG
Sbjct: 146 IPGAMGPRGEPGLKGHPGIPGVPGPKGERGI----GIPGVQGPAGPVGPMGPSGMPGKPG 201
Query: 158 PS--SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPS 213
A PG P PG +P G S GP + AP PG + P +PGP
Sbjct: 202 IGKPGATGYPGEPGKPGEPGRDGSPGPMGVSGPKGHTGPPGTGAPGKPGQNGTPGMPGPM 261
Query: 214 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 273
GP+ P PG P + G + P +PG AP PG + PGP+ P
Sbjct: 262 GVKGPQGPAGQPGSPG---MPGV-GKTGEPGIPGSRGAPGSPGTTGQKGEPGPTGFTGQP 317
Query: 274 GPSSAPDLPGPSSAPDLPGPSSTV 297
G + GP A G + V
Sbjct: 318 GATGPMGPAGPQGARGFQGEAGPV 341
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 107/303 (35%), Gaps = 67/303 (22%)
Query: 24 PLEPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP------ 75
P P PGPS SA PGPS P GP P L G P +PGP +
Sbjct: 124 PGTPGSPGPSGLSAVGKPGPSGIPGAMGPRGEPGLKGHPGIPGVPGPKGERGIGIPGVQG 183
Query: 76 --------GPSSAPDLPGPSS--APDLPGPSSAPDLPGPSSAPD---LPGP--------S 114
GPS P PG A PG P PG +P + GP +
Sbjct: 184 PAGPVGPMGPSGMPGKPGIGKPGATGYPGEPGKPGEPGRDGSPGPMGVSGPKGHTGPPGT 243
Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSS 169
AP PG + P +PGP GP+ P PG + P +PG AP PG +
Sbjct: 244 GAPGKPGQNGTPGMPGPMGVKGPQGPAGQPGSPGMPGVGKTGEPGIPGSRGAPGSPGTTG 303
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------------------PGP-------- 203
PGP+ PG + GP A PGP
Sbjct: 304 QKGEPGPTGFTGQPGATGPMGPAGPQGARGFQGEAGPVGPKGDIGMVGAPGPRGTKGEQG 363
Query: 204 ----SSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ P PG P +PG + A G + AP LPG + A G + AP PG
Sbjct: 364 AQGFTGKPGTPGAVGPPGIPGHNGAQGPKGSQGHAGAPGLPGINGAQGPKGHTGAPGAPG 423
Query: 257 PSS 259
S
Sbjct: 424 KSG 426
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 89/229 (38%), Gaps = 16/229 (6%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
T P EP PG PGP + GP PG + AP PG + P +PGP
Sbjct: 207 ATGYPGEPGKPGEPGRDGSPGPMG---VSGPKGHTGPPG-TGAPGKPGQNGTPGMPGPMG 262
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
GP+ P PG P + G + P +PG AP PG + PGP+ PG
Sbjct: 263 VKGPQGPAGQPGSPG---MPGV-GKTGEPGIPGSRGAPGSPGTTGQKGEPGPTGFTGQPG 318
Query: 140 PSSAPDLPGPSSAPDLPGPSS----APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
+ GP A G + D+ G AP G G + P PG
Sbjct: 319 ATGPMGPAGPQGARGFQGEAGPVGPKGDI-GMVGAPGPRGTKGEQGAQGFTGKPGTPGAV 377
Query: 196 SAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
P +PG + A G + AP LPG + A G + AP PG S
Sbjct: 378 GPPGIPGHNGAQGPKGSQGHAGAPGLPGINGAQGPKGHTGAPGAPGKSG 426
>gi|301778479|ref|XP_002924660.1| PREDICTED: collagen alpha-1(IV) chain-like [Ailuropoda melanoleuca]
Length = 1644
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 102/276 (36%), Gaps = 22/276 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
V P +P PGP+ P LPG PG S GP P G LPG
Sbjct: 858 VMGTPGQPGSPGPAGLPGLPGEKGDHGFPGSS------GPRGDPGFKGDKGDVGLPGKPG 911
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPD 136
+ D S G GP+ G P +PG + P PGP P
Sbjct: 912 SMDKVDMGSMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPG 971
Query: 137 LPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
+ G AP LPGP + P PG P +PGP P L G A G
Sbjct: 972 IGGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGIPGLQGEKGA---KGEKGQAG 1028
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
LPG + P PG + G +P G + +PG P PGP +P G
Sbjct: 1029 LPG-TGIPGRPGDKGDQGIAGFPGSPGEKGEKGSAGIPG---VPGSPGPKGSPGTVGYPG 1084
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
+P LPG LPG P + G + P PGP+
Sbjct: 1085 SPGLPGEKGDKGLPGSDGIPGIKGEAGLPGKPGPTG 1120
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 107/321 (33%), Gaps = 65/321 (20%)
Query: 28 DLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
D+PGP P L G S P LPG P +PG PGP + G P
Sbjct: 812 DMPGPKGDKGSQGLPGLTGQSGHPGLPGQQGTPGVPG------FPGPKGEMGVMGTPGQP 865
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
PGP+ P LPG PG S GP P G LPG + D
Sbjct: 866 GSPGPAGLPGLPGEKGDHGFPGSS------GPRGDPGFKGDKGDVGLPGKPGSMDKVDMG 919
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAP 198
S G GP+ G P +PG + P PGP P + G AP
Sbjct: 920 SMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGIGGTPGAP 979
Query: 199 DLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAP------DLPGPS------ 240
LPGP + P PG P +PGP P L G A LPG
Sbjct: 980 GLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGIPGLQGEKGAKGEKGQAGLPGTGIPGRPG 1039
Query: 241 --------------------------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
P PGP +P G +P LPG LPG
Sbjct: 1040 DKGDQGIAGFPGSPGEKGEKGSAGIPGVPGSPGPKGSPGTVGYPGSPGLPGEKGDKGLPG 1099
Query: 275 PSSAPDLPGPSSAPDLPGPSS 295
P + G + P PGP+
Sbjct: 1100 SDGIPGIKGEAGLPGKPGPTG 1120
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 100/303 (33%), Gaps = 54/303 (17%)
Query: 45 PDLPGPSSAP--DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
P +PG P LPG P L G P G P +PG A PG P
Sbjct: 700 PGVPGQKGEPGVGLPGLKGLPGLTGAPGTPGEKGNIGGPGVPGEHGAIGPPGLQGIRGDP 759
Query: 103 GPSSAPDLPGPS--------------------------SAPDLPGPSSAP-----DLPGP 131
GP P L GP P + G P D+PGP
Sbjct: 760 GP---PGLQGPKGAPGAPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMPGP 816
Query: 132 S------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
P L G S P LPG P +PG PGP + G P PGP
Sbjct: 817 KGDKGSQGLPGLTGQSGHPGLPGQQGTPGVPG------FPGPKGEMGVMGTPGQPGSPGP 870
Query: 186 SSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
+ P LPG P GP P G LPG + D S G
Sbjct: 871 AGLPGLPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGE 930
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLG 299
GP+ G P +PG + P PGP P + G AP LPGP +V G
Sbjct: 931 KGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGIGGTPGAPGLPGPKGSVGG 990
Query: 300 SYL 302
L
Sbjct: 991 MGL 993
>gi|237843939|ref|XP_002371267.1| C protein immunoglobulin-A-binding beta antigen [Toxoplasma gondii
ME49]
gi|211968931|gb|EEB04127.1| C protein immunoglobulin-A-binding beta antigen [Toxoplasma gondii
ME49]
gi|221483777|gb|EEE22089.1| C protein immunoglobulin-A-binding beta antigen, putative
[Toxoplasma gondii GT1]
Length = 396
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 84/213 (39%), Gaps = 7/213 (3%)
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
LP P LP P +PG P LPG P LPG P LPG P LPG
Sbjct: 175 LPNIGDLPQLPRLGELPRIPGLGDIPPLPGLGDIPPLPGLGDIPPLPGLGDIPPLPGLGD 234
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
LPG P LPG P LPG P LP P LP P LP P LP
Sbjct: 235 FAPLPGLGELPGLPGFGELPPLPGLGGFPQLPRLGELPQLPRLGELPSLPSLGEFPPLPS 294
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVL-----GSYL 302
P +PG S P LP S P +P P L S AP LP + L S
Sbjct: 295 LGELPPVPGLSGLPQLPIISGLPTIPSFGDLPQLSKLSDAPALPSLPTLELPKLDGSSAF 354
Query: 303 GEAGHQKSPKGLEPKPAQISFVLNIFANFHQTL 335
G + + P LE +P I N+ HQ +
Sbjct: 355 GNLTNIEFPGLLE-RPELIEIPANL-ERLHQAI 385
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 67/164 (40%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LP P LP P +PG P LPG P LPG P LPG P LPG
Sbjct: 175 LPNIGDLPQLPRLGELPRIPGLGDIPPLPGLGDIPPLPGLGDIPPLPGLGDIPPLPGLGD 234
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
LPG P LPG P LPG P LP P LP P LP P LP
Sbjct: 235 FAPLPGLGELPGLPGFGELPPLPGLGGFPQLPRLGELPQLPRLGELPSLPSLGEFPPLPS 294
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
P +PG S P LP S P +P P L S AP LP
Sbjct: 295 LGELPPVPGLSGLPQLPIISGLPTIPSFGDLPQLSKLSDAPALP 338
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 67/164 (40%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
LP P LP P +PG P LPG P LPG P LPG P LPG
Sbjct: 175 LPNIGDLPQLPRLGELPRIPGLGDIPPLPGLGDIPPLPGLGDIPPLPGLGDIPPLPGLGD 234
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
LPG P LPG P LPG P LP P LP P LP P LP
Sbjct: 235 FAPLPGLGELPGLPGFGELPPLPGLGGFPQLPRLGELPQLPRLGELPSLPSLGEFPPLPS 294
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
P +PG S P LP S P +P P L S AP LP
Sbjct: 295 LGELPPVPGLSGLPQLPIISGLPTIPSFGDLPQLSKLSDAPALP 338
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 67/164 (40%)
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LP P LP P +PG P LPG P LPG P LPG P LPG
Sbjct: 175 LPNIGDLPQLPRLGELPRIPGLGDIPPLPGLGDIPPLPGLGDIPPLPGLGDIPPLPGLGD 234
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
LPG P LPG P LPG P LP P LP P LP P LP
Sbjct: 235 FAPLPGLGELPGLPGFGELPPLPGLGGFPQLPRLGELPQLPRLGELPSLPSLGEFPPLPS 294
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
P +PG S P LP S P +P P L S AP LP
Sbjct: 295 LGELPPVPGLSGLPQLPIISGLPTIPSFGDLPQLSKLSDAPALP 338
>gi|348583740|ref|XP_003477630.1| PREDICTED: collagen alpha-1(IV) chain [Cavia porcellus]
Length = 1670
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 102/296 (34%), Gaps = 29/296 (9%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
+ P +P PGP AP PG PG S GP P G LPG
Sbjct: 884 IMGTPGQPGAPGPVGAPGFPGEKGEHGFPGSS------GPRGDPGFKGEKGDVGLPGKPG 937
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPD 136
+ D + G GP+ G P +PG + P PGP P
Sbjct: 938 SMDPVDMGTMKGQKGDQGEKGQTGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPG 997
Query: 137 LPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
+ G AP LPGP A P PG P +PG P PG A G + P
Sbjct: 998 ISGTPGAPGLPGPKGAVGGMGLPGTPGEKGVPGIPGQQGFPGSPGEKGAKGEKGQAGLPG 1057
Query: 191 L-----------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
+ G + P +PG G P PGP AP G +P LPG
Sbjct: 1058 IGIPGRPGDKGDQGLAGFPGIPGEKGEKGSAGMPGVPGSPGPKGAPGSIGYQGSPGLPGE 1117
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P + G + P P GP+ PG P G P LPG
Sbjct: 1118 KGDKGLPGLDGIPGVKGEAGLPGTPGLIGPTGQKGEPGSDGIPGSAGEKGEPGLPG 1173
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 106/313 (33%), Gaps = 44/313 (14%)
Query: 28 DLPGPSS------APDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPS 78
D+PGP P L G S P PG P LPG P + G P PGP
Sbjct: 838 DMPGPKGDKGAQGLPGLTGQSGMPGPPGQQGTPGLPGFQGPKGEMGIMGTPGQPGAPGPV 897
Query: 79 SAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGP---------SSAPDLPGPSSAP 126
AP PG PG P P G LPG + G
Sbjct: 898 GAPGFPGEKGEHGFPGSSGPRGDPGFKGEKGDVGLPGKPGSMDPVDMGTMKGQKGDQGEK 957
Query: 127 DLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---- 179
GP+ G P +PG + P PGP P + G AP LPGP A
Sbjct: 958 GQTGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGISGTPGAPGLPGPKGAVGGM 1017
Query: 180 --PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-----------PGPSSAPD 226
P PG P +PG P PG A G + P + G + P
Sbjct: 1018 GLPGTPGEKGVPGIPGQQGFPGSPGEKGAKGEKGQAGLPGIGIPGRPGDKGDQGLAGFPG 1077
Query: 227 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
+PG G P PGP AP G +P LPG LPG P + G +
Sbjct: 1078 IPGEKGEKGSAGMPGVPGSPGPKGAPGSIGYQGSPGLPGEKGDKGLPGLDGIPGVKGEAG 1137
Query: 287 ---APDLPGPSST 296
P L GP+
Sbjct: 1138 LPGTPGLIGPTGQ 1150
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 58/156 (37%), Gaps = 10/156 (6%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP + G + P +PG G P PGP AP G +P LPG
Sbjct: 1063 RPGDKGDQGLAGFPGIPGEKGEKGSAGMPGVPGSPGPKGAPGSIGYQGSPGLPGEKGDKG 1122
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG P + G + P PG L GP+ PG P G P LPG
Sbjct: 1123 LPGLDGIPGVKGEAGLPGTPG------LIGPTGQKGEPGSDGIPGSAGEKGEPGLPGRG- 1175
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
+PG A G PG + +P +PGP
Sbjct: 1176 ---IPGFQGAKGDKGSKGEVGFPGLAGSPGIPGPKG 1208
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 101/324 (31%), Gaps = 66/324 (20%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP----------- 77
LPG P +PG P G P +PG A PG PGP
Sbjct: 739 LPGLKGLPGVPGIPGTPGEKGSIGGPGVPGEHGAIGPPGLQGIRGDPGPPGVQGPAGPPG 798
Query: 78 ---------------------SSAPDLPGPSSAPDLPGPSSAPDLPGPS------SAPDL 110
S P + G P PG D+PGP P L
Sbjct: 799 APGLGPPGAMGPPGGPGLPGSSGPPGVKGEKGFPGFPG----LDMPGPKGDKGAQGLPGL 854
Query: 111 PGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-- 165
G S P PG P LP GP + G P PGP AP PG P
Sbjct: 855 TGQSGMPGPPGQQGTPGLPGFQGPKGEMGIMGTPGQPGAPGPVGAPGFPGEKGEHGFPGS 914
Query: 166 -GPSSAPDLPGPSSAPDLPGP---------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 215
GP P G LPG + G GP+ G
Sbjct: 915 SGPRGDPGFKGEKGDVGLPGKPGSMDPVDMGTMKGQKGDQGEKGQTGPTGDKGSRGDPGT 974
Query: 216 PDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGP 266
P +PG + P PGP P + G AP LPGP A P PG P +PG
Sbjct: 975 PGVPGKDGQAGHPGQPGPKGDPGISGTPGAPGLPGPKGAVGGMGLPGTPGEKGVPGIPGQ 1034
Query: 267 SSAPDLPGPSSAPDLPGPSSAPDL 290
P PG A G + P +
Sbjct: 1035 QGFPGSPGEKGAKGEKGQAGLPGI 1058
>gi|221504218|gb|EEE29893.1| C protein immunoglobulin-A-binding beta antigen, putative
[Toxoplasma gondii VEG]
Length = 396
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 83/213 (38%), Gaps = 7/213 (3%)
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
LP P LP P +PG P LPG P LPG P LPG P LPG
Sbjct: 175 LPNIGDLPQLPRLGELPRIPGLGGIPPLPGLVDIPPLPGLGDIPSLPGLGDIPPLPGLGD 234
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
LPG P LPG P LPG P LP P LP P LP P LP
Sbjct: 235 FAPLPGLGELPGLPGFGELPPLPGLGGFPQLPRLGELPQLPRLGELPSLPSLGEFPPLPS 294
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVL-----GSYL 302
P +PG S P LP S P +P P L AP LP + L S
Sbjct: 295 LGELPPVPGLSGLPQLPIISGLPTIPSFGDLPQLSKLIDAPALPSLPTLELPKLDGSSAF 354
Query: 303 GEAGHQKSPKGLEPKPAQISFVLNIFANFHQTL 335
G + + P LE +P I N+ HQ +
Sbjct: 355 GNLTNIEFPGLLE-RPELIEIPANL-ERLHQAI 385
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 66/164 (40%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LP P LP P +PG P LPG P LPG P LPG P LPG
Sbjct: 175 LPNIGDLPQLPRLGELPRIPGLGGIPPLPGLVDIPPLPGLGDIPSLPGLGDIPPLPGLGD 234
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
LPG P LPG P LPG P LP P LP P LP P LP
Sbjct: 235 FAPLPGLGELPGLPGFGELPPLPGLGGFPQLPRLGELPQLPRLGELPSLPSLGEFPPLPS 294
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
P +PG S P LP S P +P P L AP LP
Sbjct: 295 LGELPPVPGLSGLPQLPIISGLPTIPSFGDLPQLSKLIDAPALP 338
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 66/164 (40%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
LP P LP P +PG P LPG P LPG P LPG P LPG
Sbjct: 175 LPNIGDLPQLPRLGELPRIPGLGGIPPLPGLVDIPPLPGLGDIPSLPGLGDIPPLPGLGD 234
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
LPG P LPG P LPG P LP P LP P LP P LP
Sbjct: 235 FAPLPGLGELPGLPGFGELPPLPGLGGFPQLPRLGELPQLPRLGELPSLPSLGEFPPLPS 294
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
P +PG S P LP S P +P P L AP LP
Sbjct: 295 LGELPPVPGLSGLPQLPIISGLPTIPSFGDLPQLSKLIDAPALP 338
>gi|341902084|gb|EGT58019.1| hypothetical protein CAEBREN_29944 [Caenorhabditis brenneri]
Length = 1110
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 101/287 (35%), Gaps = 26/287 (9%)
Query: 26 EPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PG P +PG + AP PG P PG PG LPG P
Sbjct: 424 QPGAPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMKGEAGYPGQDG---LPGRDGLPG 480
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLP------GPSSAPDLPGPSSAPDLPGPSSAPD 136
+PG G P PG P +P G + P +PG PG
Sbjct: 481 VPGQKGELGTAGQPGLPGAPGLDGQPGVPGIRGDKGQAGLPGIPGDRGMDGFPGQKGENG 540
Query: 137 LPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
PG P L G + P PG AP PG P +PG PG LPG
Sbjct: 541 YPGQPGLPGLAGEKGFAGTPGFPGLKGAPGYPGQDGLPGIPGLKGESGYPGQPGQEGLPG 600
Query: 194 PSSAPDLPGPSSAPDLPGPS--------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
S + G P PG S AP L G P LPG L G AP L
Sbjct: 601 LSGEKGMAGLPGLPGQPGQSIPGPVGPPGAPGLQGKDGFPGLPGQKGDAGLNGLPGAPGL 660
Query: 246 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G S P PG A PG + P G P +PG P +PG
Sbjct: 661 KGDSGLPGFPG---AKGDPGANGIPGKRGEDGLPGVPGRDGQPGIPG 704
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 102/289 (35%), Gaps = 30/289 (10%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SA 80
P +P L GP GPS P +PG LPG P PG P +PG + A
Sbjct: 393 PGQPGLRGPQ------GPSGLPGVPGFKGEAGLPG-YGQPGAPGEKGLPGIPGKAGRQGA 445
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
P PG P PG PG LPG P +PG G P PG
Sbjct: 446 PGSPGQDGLPGFPGMKGEAGYPGQDG---LPGRDGLPGVPGQKGELGTAGQPGLPGAPGL 502
Query: 141 SSAPDLP------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDL 191
P +P G + P +PG PG PG P L G + P
Sbjct: 503 DGQPGVPGIRGDKGQAGLPGIPGDRGMDGFPGQKGENGYPGQPGLPGLAGEKGFAGTPGF 562
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-- 249
PG AP PG P +PG PG LPG S + G P PG S
Sbjct: 563 PGLKGAPGYPGQDGLPGIPGLKGESGYPGQPGQEGLPGLSGEKGMAGLPGLPGQPGQSIP 622
Query: 250 ------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
AP L G P LPG L G AP L G S P PG
Sbjct: 623 GPVGPPGAPGLQGKDGFPGLPGQKGDAGLNGLPGAPGLKGDSGLPGFPG 671
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 96/273 (35%), Gaps = 35/273 (12%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS 87
G + P +PG PG PG P L G + P PG AP PG
Sbjct: 516 GQAGLPGIPGDRGMDGFPGQKGENGYPGQPGLPGLAGEKGFAGTPGFPGLKGAPGYPGQD 575
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS------ 141
P +PG L G S P PG P L G LPG P PG S
Sbjct: 576 GLPGIPG------LKGESGYPGQPGQEGLPGLSGEKGMAGLPG---LPGQPGQSIPGPVG 626
Query: 142 --SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
AP L G P LPG L G AP L G S P PG A PG + P
Sbjct: 627 PPGAPGLQGKDGFPGLPGQKGDAGLNGLPGAPGLKGDSGLPGFPG---AKGDPGANGIPG 683
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
G P +PG P +PG L G + LPG P LPG LPG
Sbjct: 684 KRGEDGLPGVPGRDGQPGIPG------LKGELGSAGLPGQPGFPGLPGIKGEGGLPG--- 734
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
PG P PG P G LPG
Sbjct: 735 ---FPGAKGEPGFPGTPGVPGYAGEKGDSGLPG 764
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 99/280 (35%), Gaps = 23/280 (8%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P + LPG P +PG G P PG P +PG G + P +
Sbjct: 467 PGQDGLPGRDGLPGVPGQKGELGTAGQPGLPGAPGLDGQPGVPGIRGDK---GQAGLPGI 523
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGP 140
PG PG PG P L G + P PG AP PG P +PG
Sbjct: 524 PGDRGMDGFPGQKGENGYPGQPGLPGLAGEKGFAGTPGFPGLKGAPGYPGQDGLPGIPGL 583
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--------SAPDLPGPSSAPDLP 192
PG LPG S + G P PG S AP L G P LP
Sbjct: 584 KGESGYPGQPGQEGLPGLSGEKGMAGLPGLPGQPGQSIPGPVGPPGAPGLQGKDGFPGLP 643
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
G L G AP L G S P PG A PG + P G P +PG P
Sbjct: 644 GQKGDAGLNGLPGAPGLKGDSGLPGFPG---AKGDPGANGIPGKRGEDGLPGVPGRDGQP 700
Query: 253 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG L G + LPG P LPG LPG
Sbjct: 701 GIPG------LKGELGSAGLPGQPGFPGLPGIKGEGGLPG 734
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 114/338 (33%), Gaps = 77/338 (22%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
P P + GP P L GP P G S P LPG P L G AP G + P
Sbjct: 164 PGAPGVSGPPGIPGLSGPKGEPGYRGTPGQSIPGLPGKDGKPGLDG---APGRKGENGLP 220
Query: 82 DLPGP-----SSAPDLPGPSSAPD---LPGPSSAPDLPG-PSSAPDLPGPSSA------- 125
+ GP + P PGP AP G LPG P S D G SA
Sbjct: 221 GVRGPPGDSLNGLPGAPGPRGAPGPKGYDGRDGVNGLPGAPGSKGDRGGTCSACAPGTKG 280
Query: 126 -------PDLPGPSS---APDLPGPSSA------------PDLPGPSSAPDLPGPSSAPD 163
P PGP P +PGP P L GP P +PG P
Sbjct: 281 EKGLAGYPGQPGPQGDRGLPGMPGPVGDAGDDGDAGLPGLPGLNGPKGEPGVPGMPGNPG 340
Query: 164 LP------------GPSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPG--- 202
+ G S P + G LPG P++ G + P PG
Sbjct: 341 MKGNGGLPGLPGRDGLSGIPGMKGDRGFNGLPGEKGEAGPAARDGQKGEAGLPGQPGLRG 400
Query: 203 ---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
PS P +PG LPG P PG P +PG + G AP PG
Sbjct: 401 PQGPSGLPGVPGFKGEAGLPG-YGQPGAPGEKGLPGIPGKA------GRQGAPGSPGQDG 453
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
P PG PG LPG P +PG +
Sbjct: 454 LPGFPGMKGEAGYPGQDG---LPGRDGLPGVPGQKGEL 488
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 51/141 (36%), Gaps = 12/141 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
L G P LPG L G AP L G S P PG A PG + P G
Sbjct: 633 LQGKDGFPGLPGQKGDAGLNGLPGAPGLKGDSGLPGFPG---AKGDPGANGIPGKRGEDG 689
Query: 89 APDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P +PG P +PG + LPG P LPG LPG PG P
Sbjct: 690 LPGVPGRDGQPGIPGLKGELGSAGLPGQPGFPGLPGIKGEGGLPG------FPGAKGEPG 743
Query: 146 LPGPSSAPDLPGPSSAPDLPG 166
PG P G LPG
Sbjct: 744 FPGTPGVPGYAGEKGDSGLPG 764
>gi|119920084|ref|XP_601826.3| PREDICTED: collagen alpha-6(IV) chain [Bos taurus]
gi|297492840|ref|XP_002699932.1| PREDICTED: collagen alpha-6(IV) chain [Bos taurus]
gi|296470961|tpg|DAA13076.1| TPA: collagen, type IV, alpha 6 [Bos taurus]
Length = 1690
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 103/330 (31%), Positives = 113/330 (34%), Gaps = 80/330 (24%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------PGPSSAPDLPGPSSAPDLPGPSSA 80
P PGP P G P PGP P + PGP LPG AP PGP A
Sbjct: 623 PGAPGPRGLPGDKGVDGLPGQPGPRGVPGITLPCIIPGPYGPSGLPG---APGFPGPKGA 679
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
LPG P L G P PG P+LPG PGP LPG P LPG
Sbjct: 680 RGLPGAPGQPGLRGNKGDPGSPGLVHLPELPG------FPGPHGEKGLPG---FPGLPGK 730
Query: 141 SSAPDLPGPSSAPDLPGPSSAPD--------LPGPSSAPDLPGPSSAPD----------- 181
LPG +P LPGP AP PG LPG P
Sbjct: 731 DG---LPGKVGSPGLPGPKGAPGDILGAENGAPGEQGLQGLPGDRGFPGDSGLPGLKGLL 787
Query: 182 -------------------------------LPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
L G P L GP P PG S P
Sbjct: 788 GKSGLLGPKGERGSPGIPGRVGQPGPPGPSGLFGIKGKPGLRGP---PGFPGISGYPGKK 844
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPS 267
GP LP + LPG P LPGP LPG + P LPG G +
Sbjct: 845 GPRGEIGLPASAGKRGLPGLKGLPGLPGPIGFLGNSGLPGATGLPGLPGLKGEKGSVGLT 904
Query: 268 SAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
P +PG P +PG S +PG + V
Sbjct: 905 GFPGIPG---LPGIPGASGLKGIPGSTGRV 931
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 78/202 (38%), Gaps = 30/202 (14%)
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
A PG P LPG GP P PGP P G P PGP P
Sbjct: 592 GAQGFPGEKGLPGLPGEKGHTGPTGPPGIGLPGAPGPRGLPGDKGVDGLPGQPGPRGVPG 651
Query: 191 L------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
+ PGP LPG AP PGP A LPG P L G P PG P+
Sbjct: 652 ITLPCIIPGPYGPSGLPG---APGFPGPKGARGLPGAPGQPGLRGNKGDPGSPGLVHLPE 708
Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST---VLGSY 301
LPG PGP LPG P LPG LPG +P LPGP +LG+
Sbjct: 709 LPG------FPGPHGEKGLPG---FPGLPGKDG---LPGKVGSPGLPGPKGAPGDILGAE 756
Query: 302 LGEAGHQKSPKGLEPKPAQISF 323
G G Q GL+ P F
Sbjct: 757 NGAPGEQ----GLQGLPGDRGF 774
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 78/226 (34%), Gaps = 9/226 (3%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------ 83
PG + LPG P + G P G +PG A LPG
Sbjct: 1019 PGSTGLRGLPGLKGYPGIAGFQGIPGESGSQGLSGVPGLPGASGLPGLKGDQGQTLGISG 1078
Query: 84 -PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
PGP P G GP PG G S LPG P + G
Sbjct: 1079 SPGPKGQPGESGFKGVKGKDGPVGDVGFPGNKGEDGKVGISGDVGLPGSLGLPGVAGMRG 1138
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
P LPG P GP P L G P LPG LPG PGPS +PG
Sbjct: 1139 NPGLPGSPGHPGATGPLGPPGLIGTKGFPGLPGLHGLNGLPGTKGTHGTPGPSIT-GVPG 1197
Query: 203 PSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
P+ P G +P + G P + GP + PG A LPG
Sbjct: 1198 PAGLPGPKGEKGSPGIGIGAPGKPGIRGPKGSQGFPGLQGAAGLPG 1243
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 68/193 (35%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG + LPG P + G +PG S + L S P LPG S
Sbjct: 1009 IKGLSGRPGPPGSTGLRGLPGLKGYPGIAGFQG---IPGESGSQGL---SGVPGLPGASG 1062
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P L G PGP P G GP PG G S
Sbjct: 1063 LPGLKGDQGQTLGISGSPGPKGQPGESGFKGVKGKDGPVGDVGFPGNKGEDGKVGISGDV 1122
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
LPG P + G P LPG P GP P L G P LPG LPG
Sbjct: 1123 GLPGSLGLPGVAGMRGNPGLPGSPGHPGATGPLGPPGLIGTKGFPGLPGLHGLNGLPGTK 1182
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1183 GTHGTPGPSITGV 1195
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 112/296 (37%), Gaps = 26/296 (8%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPS 78
+ P P PGP LPG P LPG LPG +P LPGP AP D+ G
Sbjct: 703 LVHLPELPGFPGPHGEKGLPG---FPGLPGKDG---LPGKVGSPGLPGPKGAPGDILGAE 756
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
+ PG LPG PG S P L G L GP PG P
Sbjct: 757 NG--APGEQGLQGLPGDRG---FPGDSGLPGLKGLLGKSGLLGPKGERGSPGIPGRVGQP 811
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
GP L G P L GP P PG S P GP LP + LPG P
Sbjct: 812 GPPGPSGLFGIKGKPGLRGP---PGFPGISGYPGKKGPRGEIGLPASAGKRGLPGLKGLP 868
Query: 199 DLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
LPGP LPG + P LPG G + P +PG P +PG S +P
Sbjct: 869 GLPGPIGFLGNSGLPGATGLPGLPGLKGEKGSVGLTGFPGIPG---LPGIPGASGLKGIP 925
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSP 311
G + GPS PG PGP P P + + G+ G Q SP
Sbjct: 926 GSTGR---VGPSGWAGSPGEKGDRGDPGPFGIPSHRPPMLNL--RFKGDKGSQGSP 976
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 123/473 (26%), Positives = 156/473 (32%), Gaps = 102/473 (21%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P + G P LPG P GP P L G P LPG LPG PGP
Sbjct: 1131 PGVAGMRGNPGLPGSPGHPGATGPLGPPGLIGTKGFPGLPGLHGLNGLPGTKGTHGTPGP 1190
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPG------ 139
S +PGP+ P G +P + G P + GP + PG A LPG
Sbjct: 1191 SIT-GVPGPAGLPGPKGEKGSPGIGIGAPGKPGIRGPKGSQGFPGLQGAAGLPGALGLSL 1249
Query: 140 PSSAPDLPGPSSAPDL------------------------PGPSSAPDLPGPSSAPDLPG 175
PS PG P L PG P +PGP G
Sbjct: 1250 PSVIEGQPGDPGRPGLDGERGRPGPPGPPGPPGPASDQGDPGDPGFPGIPGPQ------G 1303
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD------------LPGPSSAPDLPGPSS 223
P +PG S P G PG P + G + L GP
Sbjct: 1304 PKGDQGIPGFSGLPGELGLKGMRGEPGFMGTPGKVGPPGDPGLPGMKGKAGPRGLSGPRG 1363
Query: 224 AP----------------DLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
AP LPG P L PG L G P +PG A LP
Sbjct: 1364 APGHTPIAEAIQAPPGPMGLPGIDGIPGLMGDPGVQGPVGLQGSKGLPGIPGKDGASGLP 1423
Query: 265 GPSSA------PDLPGP---SSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQK---SPK 312
GP A P L GP AP PGP +PG S V + + + ++ P
Sbjct: 1424 GPPGALGDPGLPGLQGPPGFEGAPGKPGPFGRAGVPGQSLRVGYTLVKHSQSEQVPLCPS 1483
Query: 313 GLEPKPAQIS--FVLNIFANFHQTLRFLHFSCTSLVVTRATVVKLPLYILTVEDDTVILL 370
G+ S FV +Q L F SC T +P + +
Sbjct: 1484 GMSQLWVGYSLLFVEGQEKAHNQDLGFAG-SCLPRFST------MPFIYCNINE------ 1530
Query: 371 FIETFIQLPQQAYTTNSFA--PMDPSKDDTVILLFIKTC--IQLPQQAYTTNS 419
+ + + ++Y ++ A PM P T I +I C + P QA +S
Sbjct: 1531 -VCHYARRNDKSYWLSTTAPIPMMPV-GQTQIPQYISRCSVCEAPSQAIAVHS 1581
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 101/275 (36%), Gaps = 22/275 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 87
L G P L GP P PG S P GP LP + LPG P LPGP
Sbjct: 819 LFGIKGKPGLRGP---PGFPGISGYPGKKGPRGEIGLPASAGKRGLPGLKGLPGLPGPIG 875
Query: 88 --SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
LPG + P LPG G + P +PG P +PG S +PG +
Sbjct: 876 FLGNSGLPGATGLPGLPGLKGEKGSVGLTGFPGIPG---LPGIPGASGLKGIPGSTGR-- 930
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
GPS PG PGP P P G + PG A PGP
Sbjct: 931 -VGPSGWAGSPGEKGDRGDPGPFGIPSHRPPMLNLRFKGDKGSQGSPG---AIGFPGPRG 986
Query: 206 APDLPGPSSAPDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
G P LPG P L G S P PG + LPG P + G +P
Sbjct: 987 DKGEAGHPGPPGLPGAPGFPSLIKGLSGRPGPPGSTGLRGLPGLKGYPGIAGFQG---IP 1043
Query: 265 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLG 299
G S + L S P LPG S P L G LG
Sbjct: 1044 GESGSQGL---SGVPGLPGASGLPGLKGDQGQTLG 1075
>gi|281346765|gb|EFB22349.1| hypothetical protein PANDA_014033 [Ailuropoda melanoleuca]
Length = 1513
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 102/276 (36%), Gaps = 22/276 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
V P +P PGP+ P LPG PG S GP P G LPG
Sbjct: 727 VMGTPGQPGSPGPAGLPGLPGEKGDHGFPGSS------GPRGDPGFKGDKGDVGLPGKPG 780
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPD 136
+ D S G GP+ G P +PG + P PGP P
Sbjct: 781 SMDKVDMGSMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPG 840
Query: 137 LPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
+ G AP LPGP + P PG P +PGP P L G A G
Sbjct: 841 IGGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGIPGLQGEKGA---KGEKGQAG 897
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
LPG + P PG + G +P G + +PG P PGP +P G
Sbjct: 898 LPG-TGIPGRPGDKGDQGIAGFPGSPGEKGEKGSAGIPG---VPGSPGPKGSPGTVGYPG 953
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
+P LPG LPG P + G + P PGP+
Sbjct: 954 SPGLPGEKGDKGLPGSDGIPGIKGEAGLPGKPGPTG 989
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 107/321 (33%), Gaps = 65/321 (20%)
Query: 28 DLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
D+PGP P L G S P LPG P +PG PGP + G P
Sbjct: 681 DMPGPKGDKGSQGLPGLTGQSGHPGLPGQQGTPGVPG------FPGPKGEMGVMGTPGQP 734
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
PGP+ P LPG PG S GP P G LPG + D
Sbjct: 735 GSPGPAGLPGLPGEKGDHGFPGSS------GPRGDPGFKGDKGDVGLPGKPGSMDKVDMG 788
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAP 198
S G GP+ G P +PG + P PGP P + G AP
Sbjct: 789 SMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGIGGTPGAP 848
Query: 199 DLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAP------DLPGPS------ 240
LPGP + P PG P +PGP P L G A LPG
Sbjct: 849 GLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGIPGLQGEKGAKGEKGQAGLPGTGIPGRPG 908
Query: 241 --------------------------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
P PGP +P G +P LPG LPG
Sbjct: 909 DKGDQGIAGFPGSPGEKGEKGSAGIPGVPGSPGPKGSPGTVGYPGSPGLPGEKGDKGLPG 968
Query: 275 PSSAPDLPGPSSAPDLPGPSS 295
P + G + P PGP+
Sbjct: 969 SDGIPGIKGEAGLPGKPGPTG 989
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 100/303 (33%), Gaps = 54/303 (17%)
Query: 45 PDLPGPSSAP--DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
P +PG P LPG P L G P G P +PG A PG P
Sbjct: 569 PGVPGQKGEPGVGLPGLKGLPGLTGAPGTPGEKGNIGGPGVPGEHGAIGPPGLQGIRGDP 628
Query: 103 GPSSAPDLPGPS--------------------------SAPDLPGPSSAP-----DLPGP 131
GP P L GP P + G P D+PGP
Sbjct: 629 GP---PGLQGPKGAPGAPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMPGP 685
Query: 132 S------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
P L G S P LPG P +PG PGP + G P PGP
Sbjct: 686 KGDKGSQGLPGLTGQSGHPGLPGQQGTPGVPG------FPGPKGEMGVMGTPGQPGSPGP 739
Query: 186 SSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
+ P LPG P GP P G LPG + D S G
Sbjct: 740 AGLPGLPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGE 799
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLG 299
GP+ G P +PG + P PGP P + G AP LPGP +V G
Sbjct: 800 KGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGIGGTPGAPGLPGPKGSVGG 859
Query: 300 SYL 302
L
Sbjct: 860 MGL 862
>gi|156056965|ref|XP_001594406.1| hypothetical protein SS1G_04213 [Sclerotinia sclerotiorum 1980]
gi|154701999|gb|EDO01738.1| hypothetical protein SS1G_04213 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1761
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 74/142 (52%), Gaps = 13/142 (9%)
Query: 110 LPGPSSAPDLPGP---SSAPDLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSS 160
L PSSAP PG S + +PG A + SS +PG SS +PG SS
Sbjct: 1506 LGSPSSAPGYPGSPAVSVSSGIPGQVVSVSSSSAQGISVGSSTVIIPGASSTVVIPGASS 1565
Query: 161 APDLPGPSSAPDLPGPSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
+ +PG SS+ +PG SS +P G SS +PG SS+ +PG S+ +PG SS +
Sbjct: 1566 SVIIPGASSSVIIPGASSTGVIPVSGSSSTVVIPGASSSVIIPGAPSSVIIPGASSTAII 1625
Query: 219 PGPSSAPDLPG--PSSAPDLPG 238
PGPSS +P PSS +PG
Sbjct: 1626 PGPSSTNAIPASVPSSTIIIPG 1647
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 74/142 (52%), Gaps = 13/142 (9%)
Query: 146 LPGPSSAPDLPGP---SSAPDLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSS 196
L PSSAP PG S + +PG A + SS +PG SS +PG SS
Sbjct: 1506 LGSPSSAPGYPGSPAVSVSSGIPGQVVSVSSSSAQGISVGSSTVIIPGASSTVVIPGASS 1565
Query: 197 APDLPGPSSAPDLPGPSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
+ +PG SS+ +PG SS +P G SS +PG SS+ +PG S+ +PG SS +
Sbjct: 1566 SVIIPGASSSVIIPGASSTGVIPVSGSSSTVVIPGASSSVIIPGAPSSVIIPGASSTAII 1625
Query: 255 PGPSSAPDLPG--PSSAPDLPG 274
PGPSS +P PSS +PG
Sbjct: 1626 PGPSSTNAIPASVPSSTIIIPG 1647
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Query: 42 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP--GPSSAPDLPGPSSAP 99
SS +PG SS +PG SS+ +PG SS+ +PG SS +P G SS +PG SS+
Sbjct: 1546 SSTVIIPGASSTVVIPGASSSVIIPGASSSVIIPGASSTGVIPVSGSSSTVVIPGASSSV 1605
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLPG 139
+PG S+ +PG SS +PGPSS +P PSS +PG
Sbjct: 1606 IIPGAPSSVIIPGASSTAIIPGPSSTNAIPASVPSSTIIIPG 1647
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 83/191 (43%), Gaps = 20/191 (10%)
Query: 25 LEPDLPGPSSAPDLPGPSSAPDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGP 77
L +P SSA DL G S P PS++ P + G S P + G S P + G
Sbjct: 570 LTASIPAQSSAGDLSGISVFPSGSSPSASVSGSGSFPSVSGSGSFPSVSGSGSFPSVSGS 629
Query: 78 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 137
S P + G SS P + G S P + G S P + G S P + G S P + G S P +
Sbjct: 630 GSLPSVSGSSSLPSVSGSGSLPSVSGSGSLPSVSGSGSLPSVSGSGSLPSVSGSGSLPSV 689
Query: 138 PGPSSAPDLPGPSSAP----------DLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPG 184
G S P + G S P P ++A LP SS P L G ++ P P
Sbjct: 690 SGSGSLPSVSGSGSLPVASASALGSGSSPSGTAAASLPCVSSGPLLSGQTACPVSASTPA 749
Query: 185 PSSAPDLPGPS 195
+SA DL G S
Sbjct: 750 QTSAGDLSGIS 760
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 82/188 (43%), Gaps = 20/188 (10%)
Query: 37 DLPGPSSAPDLPGPSSAPDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSA 89
+P SSA DL G S P PS++ P + G S P + G S P + G S
Sbjct: 573 SIPAQSSAGDLSGISVFPSGSSPSASVSGSGSFPSVSGSGSFPSVSGSGSFPSVSGSGSL 632
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
P + G SS P + G S P + G S P + G S P + G S P + G S P + G
Sbjct: 633 PSVSGSSSLPSVSGSGSLPSVSGSGSLPSVSGSGSLPSVSGSGSLPSVSGSGSLPSVSGS 692
Query: 150 SSAPDLPGPSSAP----------DLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSS 196
S P + G S P P ++A LP SS P L G ++ P P +S
Sbjct: 693 GSLPSVSGSGSLPVASASALGSGSSPSGTAAASLPCVSSGPLLSGQTACPVSASTPAQTS 752
Query: 197 APDLPGPS 204
A DL G S
Sbjct: 753 AGDLSGIS 760
>gi|395745549|ref|XP_003780511.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(IV) chain [Pongo
abelii]
Length = 1363
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 109/302 (36%), Gaps = 49/302 (16%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 83
P + G S P LPG AP +PG P S ++ G P PGP AP LPG
Sbjct: 573 PGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDHGF 632
Query: 84 PG---PSSAPDLPGPSSAPDLPGPSSAPDL------------------------------ 110
PG P P G LPG + D
Sbjct: 633 PGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSRGD 692
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
PG P G + P PGP P + G AP LPGP + P PG P +
Sbjct: 693 PGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 752
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PG +P LPG A G + P + P L G L G +P G +
Sbjct: 753 PGLQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGLVGFPGSPGEKGEKGS 808
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
+PG +P L G + PG +P LPG LPG P + G + P PGP
Sbjct: 809 IGIPGMPGSPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGP 865
Query: 285 SS 286
+
Sbjct: 866 TG 867
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 101/282 (35%), Gaps = 25/282 (8%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D+PGP G P + G S P LPG AP +PG PG + G
Sbjct: 559 DMPGPKGDK---GAQGLPGITGQSGLPGLPGQQGAPGIPG------FPGSKGEMGVMGTP 609
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
P PGP AP LPG PG P P G LPG + D S
Sbjct: 610 GQPGSPGPVGAPGLPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMK 669
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLP 201
G GP G P +PG + P PGP P + G AP LP
Sbjct: 670 GQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLP 729
Query: 202 GPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
GP + P PG P +PG +P LPG A G + P + P L
Sbjct: 730 GPKGSVGGMGLPGTPGEKGVPGIPGLQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLR 785
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
G L G +P G + +PG +P L G +V
Sbjct: 786 GEKGDQGLVGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSV 827
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 95/242 (39%), Gaps = 14/242 (5%)
Query: 57 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 110
PG P G + P PGP P + G AP LPGP + P PG P +
Sbjct: 693 PGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 752
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
PG +P LPG A G + P + P L G L G +P G +
Sbjct: 753 PGLQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGLVGFPGSPGEKGEKGS 808
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
+PG +P L G + PG +P LPG LPG P + G + P PGP
Sbjct: 809 IGIPGMPGSPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGP 865
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
+ G + +PG + PG S+A P S+ G PG + +P +
Sbjct: 866 TGPAGQKGEPGSDGIPGSAGEKGEPGCSAAA-FPITSNCFSCLGSKGEVGFPGLAGSPGI 924
Query: 291 PG 292
PG
Sbjct: 925 PG 926
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 92/234 (39%), Gaps = 17/234 (7%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PGP P + G AP LPGP LPG +PG +PG +P
Sbjct: 707 QPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPG------IPGLQGSPG 760
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG A G + P + P L G L G +P G + +PG
Sbjct: 761 LPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGLVGFPGSPGEKGEKGSIGIPGMPG 816
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+P L G + PG +P LPG LPG P + G + P PGP+ G
Sbjct: 817 SPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKG 873
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ +PG + PG S+A P S+ G PG + +P +PG
Sbjct: 874 EPGSDGIPGSAGEKGEPGCSAAA-FPITSNCFSCLGSKGEVGFPGLAGSPGIPG 926
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 114/313 (36%), Gaps = 51/313 (16%)
Query: 20 VTERPLEPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 73
++ P P LPGP + P PG P +PG +P LPG A G + P
Sbjct: 719 ISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGLQGSPGLPGDKGAKGEKGQAGPPG 778
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
+ P L G L G +P G + +PG +P L G + PG
Sbjct: 779 I----GIPGLRGEKGDQGLVGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSVGYPG--- 831
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
+P LPG LPG P + G + P PGP+ G + +PG + PG
Sbjct: 832 SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSAGEKGEPG 891
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG----------------------PS 231
S+A P S+ G PG + +P +PG P
Sbjct: 892 CSAAA-FPITSNCFSCLGSKGEVGFPGLAGSPGIPGSKGEQGFMGPPGPQGQPGLPGSPG 950
Query: 232 SAPDLP----GPSSAPDLPGPSSA--------PDLPGPSSAPDLPGPSSAPDLPGPSSAP 279
A + P GP P LPG A +L G +P + G S D+ GP P
Sbjct: 951 HATEGPKGDRGPQGQPGLPGVEGALALSMELCCELEGIGGSPGITG--SKGDM-GPPGVP 1007
Query: 280 DLPGPSSAPDLPG 292
GP P L G
Sbjct: 1008 GFQGPKGLPGLQG 1020
>gi|7271901|gb|AAF44681.1|AF239838_1 collagen IV a1 chain [Gallus gallus]
Length = 979
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 105/299 (35%), Gaps = 28/299 (9%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPD 82
+P +PG P LPGP + L G + A G P LPG P LPG +
Sbjct: 160 QPGVPGSVGLPGLPGPQGSVGLKGSAGAKGEMGVMGTPGLPGTPGPVGDRGLPGEKGSQG 219
Query: 83 LP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLP 138
L GP P + G LPG + D S G P DL GP+ L
Sbjct: 220 LKGVVGPQGEPGVKGDKGEAGLPGIPGSMDTMDMVSLKGQKGDPGEKGDL-GPTGEKGLR 278
Query: 139 GPSSAPDLPGPSSAPDLPG------------------PSSAPDLPGPSSAPDLPGPSSAP 180
G P +PG P PG G P PG P
Sbjct: 279 GEYGEPGIPGRDGEPGTPGQPGPKGDQGPPGYPGDPGIPGQKGSVGEMGLPGTPGEKGLP 338
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDL--PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
+PG P PG G + P + PG PG + +P L G G
Sbjct: 339 GIPGSPGTPGFPGQKGEKGDKGAAGFPGIGFPGSPGEKGEPGRTGSPGLSGDKGEKGNAG 398
Query: 239 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
P PGP +P + G +P L G LPG S P L G P +PGP+ ++
Sbjct: 399 IPGMPGAPGPKGSPGIAGFPGSPGLHGAKGEKGLPGLSGIPGLKGEPGEPGVPGPAGSI 457
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 79/221 (35%), Gaps = 5/221 (2%)
Query: 58 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL--PGPSSAPDLPGPSS 115
G P PG P +PG P PG G + P + PG PG +
Sbjct: 324 GEMGLPGTPGEKGLPGIPGSPGTPGFPGQKGEKGDKGAAGFPGIGFPGSPGEKGEPGRTG 383
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
+P L G G P PGP +P + G +P L G LPG S P L G
Sbjct: 384 SPGLSGDKGEKGNAGIPGMPGAPGPKGSPGIAGFPGSPGLHGAKGEKGLPGLSGIPGLKG 443
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLPGPSSAPDLPGPSSA 233
P +PGP+ + G +PG + A G P PG G
Sbjct: 444 EPGEPGVPGPAGSIGQKGEPGYDGIPGTAGAKGEQGVPGRGVPGYPGAKGDKGAKGEVGF 503
Query: 234 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP 273
P PG P L G PGP LPG P SA + P
Sbjct: 504 PGSPGIPGIPGLKGEQGYAGPPGPKGNQGLPGLPGSAIEGP 544
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 95/276 (34%), Gaps = 56/276 (20%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--- 85
LPGP P +PGP+ +PG P LPG PG P G P LPG
Sbjct: 48 LPGPKGLPGIPGPAG---IPGEKGNPGLPGLRGEQGFPG---VPGQQGFRGDPGLPGLQG 101
Query: 86 --------------------------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 119
P P + G P +PG D+PGP
Sbjct: 102 LPGPQGSPGVGPPGLPGPAGQPGPEGPPGFPGIKGERGFPGIPG----LDMPGPKGD--- 154
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
G P +PG P LPGP + L G + A G P LPG PGP
Sbjct: 155 KGSQGQPGVPGSVGLPGLPGPQGSVGLKGSAGAKGEMGVMGTPGLPG------TPGPVGD 208
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG- 238
LPG + L G + GP P + G LPG + D S G
Sbjct: 209 RGLPGEKGSQGLKG------VVGPQGEPGVKGDKGEAGLPGIPGSMDTMDMVSLKGQKGD 262
Query: 239 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
P DL GP+ L G P +PG P PG
Sbjct: 263 PGEKGDL-GPTGEKGLRGEYGEPGIPGRDGEPGTPG 297
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 64/172 (37%), Gaps = 3/172 (1%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P E PG + +P L G G P PGP +P + G +P L G L
Sbjct: 373 PGEKGEPGRTGSPGLSGDKGEKGNAGIPGMPGAPGPKGSPGIAGFPGSPGLHGAKGEKGL 432
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLPGPS 141
PG S P L G P +PGP+ + G +PG + A G P PG
Sbjct: 433 PGLSGIPGLKGEPGEPGVPGPAGSIGQKGEPGYDGIPGTAGAKGEQGVPGRGVPGYPGAK 492
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP 192
G P PG P L G PGP LPG P SA + P
Sbjct: 493 GDKGAKGEVGFPGSPGIPGIPGLKGEQGYAGPPGPKGNQGLPGLPGSAIEGP 544
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 98/292 (33%), Gaps = 58/292 (19%)
Query: 24 PLEPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA- 80
P P L G P LPGP P +PGP+ P G P L G P +PG
Sbjct: 32 PGTPGLQGQKGEPGVGLPGPKGLPGIPGPAGIPGEKGNPGLPGLRGEQGFPGVPGQQGFR 91
Query: 81 --PDLPG-----------------------------PSSAPDLPGPSSAPDLPGPSSAPD 109
P LPG P P + G P +PG D
Sbjct: 92 GDPGLPGLQGLPGPQGSPGVGPPGLPGPAGQPGPEGPPGFPGIKGERGFPGIPGL----D 147
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+PGP G P +PG P LPGP + L G + A G P LPG
Sbjct: 148 MPGPKGDK---GSQGQPGVPGSVGLPGLPGPQGSVGLKGSAGAKGEMGVMGTPGLPG--- 201
Query: 170 APDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 226
PGP LPG + L G P P + G LPG + D S
Sbjct: 202 ---TPGPVGDRGLPGEKGSQGLKGVVGPQGEPGVKGDKGEAGLPGIPGSMDTMDMVSLKG 258
Query: 227 LPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
G P DL GP+ L G P +PG P P PGP
Sbjct: 259 QKGDPGEKGDL-GPTGEKGLRGEYGEPGIPGRDGEP------GTPGQPGPKG 303
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 80/236 (33%), Gaps = 56/236 (23%)
Query: 79 SAPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
P L G P LPGP P +PGP+ +PG P LPG PG P
Sbjct: 33 GTPGLQGQKGEPGVGLPGPKGLPGIPGPAG---IPGEKGNPGLPGLRGEQGFPG---VPG 86
Query: 137 LPGPSSAPDLPG-----------------------------PSSAPDLPGPSSAPDLPGP 167
G P LPG P P + G P +PG
Sbjct: 87 QQGFRGDPGLPGLQGLPGPQGSPGVGPPGLPGPAGQPGPEGPPGFPGIKGERGFPGIPGL 146
Query: 168 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 227
D+PGP G P +PG P LPGP + L G + A G P L
Sbjct: 147 ----DMPGPKGDK---GSQGQPGVPGSVGLPGLPGPQGSVGLKGSAGAKGEMGVMGTPGL 199
Query: 228 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
PG PGP LPG + L G + GP P + G LPG
Sbjct: 200 PG------TPGPVGDRGLPGEKGSQGLKG------VVGPQGEPGVKGDKGEAGLPG 243
>gi|301604358|ref|XP_002931863.1| PREDICTED: hypothetical protein LOC100492984 [Xenopus (Silurana)
tropicalis]
Length = 1650
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 111/287 (38%), Gaps = 24/287 (8%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPD 82
EP LPG S L G A LPG S +P +PG P L G S P PG S P
Sbjct: 930 EPGLPGSSG---LSGAKGAAGLPGNSGSPGQIGIPGSPGLPGLKGDSGLPGQPGTSGPPG 986
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
L G LPGP + PG P PG + +P G PG S A +PG
Sbjct: 987 LKGSMGEMGLPGPPGSKGSPG---QPGRPGSAGSPGFSGLKGEKGEPGISGA-GIPGFPG 1042
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
PG + P PG P PG P + GP P LPG +P PG G
Sbjct: 1043 QKGEPGQNGFPGSPGSKGNPGNPGLPGLPGISGPKGDPGLPGFPGSPGSPGLKGVDGPTG 1102
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSS--APDLPGP 257
S P PG PGP P G +PGPS P LPG S P LPG
Sbjct: 1103 NSGLPGSPGLRGESGRPGPQGTPGEKGQPGQDGIPGPSGLKGEPGLPGFGSPGLPGLPGS 1162
Query: 258 SSAP---DLPGPSSAPDLPGPSSAPDLP------GPSSAPDLPGPSS 295
L G P LPG P GP+ P LPGP +
Sbjct: 1163 QGQKGDAGLSGSPGNPGLPGFKGDQGFPGSPGPQGPTGQPGLPGPRT 1209
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 103/268 (38%), Gaps = 18/268 (6%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P + +PG P L G S P PG S P L G LPGP + PG P
Sbjct: 955 PGQIGIPGSPGLPGLKGDSGLPGQPGTSGPPGLKGSMGEMGLPGPPGSKGSPG---QPGR 1011
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
PG + +P G PG S A +PG PG + P PG P PG
Sbjct: 1012 PGSAGSPGFSGLKGEKGEPGISGA-GIPGFPGQKGEPGQNGFPGSPGSKGNPGNPGLPGL 1070
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
P + GP P LPG +P PG G S P PG PGP P G
Sbjct: 1071 PGISGPKGDPGLPGFPGSPGSPGLKGVDGPTGNSGLPGSPGLRGESGRPGPQGTPGEKGQ 1130
Query: 204 SSAPDLPGPS---SAPDLPGPSS--APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
+PGPS P LPG S P LPG G S +P PG P G
Sbjct: 1131 PGQDGIPGPSGLKGEPGLPGFGSPGLPGLPGSQGQKGDAGLSGSPGNPG---LPGFKGDQ 1187
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
P PGP GP+ P LPGP +
Sbjct: 1188 GFPGSPGPQ------GPTGQPGLPGPRT 1209
Score = 41.2 bits (95), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 80/212 (37%), Gaps = 20/212 (9%)
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
LPG S A G P GP+ P PG P G P PG S P G
Sbjct: 850 LPGFSGAKGEMGVMGPPGSVGPAGNPGNPG---LPGSKGNDGNPGQPGLSGLPGAEGEKG 906
Query: 161 APDLPGP-----SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 215
LPGP S+ G P LPG S L G A LPG S +P G +
Sbjct: 907 ERGLPGPPGRVDSANLQFKGVKGEPGLPGSSG---LSGAKGAAGLPGNSGSPGQIGIPGS 963
Query: 216 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 275
P LPG L G S P PG S P L G LPGP + PG P PG
Sbjct: 964 PGLPG------LKGDSGLPGQPGTSGPPGLKGSMGEMGLPGPPGSKGSPG---QPGRPGS 1014
Query: 276 SSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGH 307
+ +P G PG S + + G+ G
Sbjct: 1015 AGSPGFSGLKGEKGEPGISGAGIPGFPGQKGE 1046
>gi|74008065|ref|XP_850954.1| PREDICTED: collagen alpha-6(IV) chain isoform 2 [Canis lupus
familiaris]
Length = 1689
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 111/346 (32%), Positives = 130/346 (37%), Gaps = 72/346 (20%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAP 81
LPG LPG P LPG P P+ G S AP PGP A LPG P
Sbjct: 628 GLPGDQGIDGLPGQQGLPGLPGITLPCIIPETYGLSGLPGAPGFPGPKGARGLPGTPGQP 687
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
L G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 688 GLRGNKGEPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGKL 735
Query: 142 SAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGP------------ 185
+P LPGP AP D+ G + PG LPG P LPGP
Sbjct: 736 GSPGLPGPKGAPGDIFGAENGS--PGEQGLQGLPGDRGLPGDSGLPGPKGLLGKSGLLGP 793
Query: 186 -------------------------SSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPD 217
S PG P PGPS P L G + +P
Sbjct: 794 KGERGSPGTPGHMGEPGPPGPDGLYGSIKGKPGLPGVPGFPGPSGHPGKKGLRGETGSPA 853
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
G P L G +P L G + LPG + P LPGP G P +PG
Sbjct: 854 SAGKRGLPGLKGLPGSPGLIGFLGSSGLPGNTGLPGLPGPKGEKGSVGLVGFPGMPG--- 910
Query: 278 APDLPGPSSAPDLPGPSSTVLGSYLGEAGH--QKSPKGLEPKPAQI 321
P +PG S + G + V G+AGH +K +G +P PA +
Sbjct: 911 LPGIPGTSGIKGISGSAGRV--GPSGKAGHAGEKGDRG-DPGPAGV 953
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 84/209 (40%), Gaps = 26/209 (12%)
Query: 46 DLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 103
PG P LPG S P P P PGP LPG LPG P LPG
Sbjct: 593 GFPGEKGLPGLPGERGHSGPTGPPGIGLPGSPGPRG---LPGDQGIDGLPGQQGLPGLPG 649
Query: 104 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 163
+ +P LPG AP PGP A LPG P L G P PG P+
Sbjct: 650 ITLPCIIPETYGLSGLPG---APGFPGPKGARGLPGTPGQPGLRGNKGEPGSPGLVHLPE 706
Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPS 222
LPG PGP LPG P LPG LPG +P LPGP AP D+ G
Sbjct: 707 LPG------FPGPRGEKGLPG---FPGLPGKDG---LPGKLGSPGLPGPKGAPGDIFGAE 754
Query: 223 SAPDLPGPSSAPDLPGPSSAP---DLPGP 248
+ PG LPG P LPGP
Sbjct: 755 NGS--PGEQGLQGLPGDRGLPGDSGLPGP 781
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 95/254 (37%), Gaps = 49/254 (19%)
Query: 49 GPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPG-- 103
GPS AP L GP PGP+ + G SSA +PG P GP P G
Sbjct: 522 GPSGAPGLFGP------PGPAGSKGDKGEPTFSSASGVPGEQGDP---GPQGLPGEMGAP 572
Query: 104 ---------------PSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDL 146
PG P LPG S P P P PGP L
Sbjct: 573 GKDGIPGLPGLPGLPGDGGQGFPGEKGLPGLPGERGHSGPTGPPGIGLPGSPGPRG---L 629
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
PG LPG P LPG + +P LPG AP PGP A LPG
Sbjct: 630 PGDQGIDGLPGQQGLPGLPGITLPCIIPETYGLSGLPG---APGFPGPKGARGLPGTPGQ 686
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
P L G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 687 PGLRGNKGEPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGK 734
Query: 267 SSAPDLPGPSSAPD 280
+P LPGP AP
Sbjct: 735 LGSPGLPGPKGAPG 748
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 116/425 (27%), Positives = 131/425 (30%), Gaps = 133/425 (31%)
Query: 9 VFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 68
VF + D + ++ P +P +PG P L G LPGPS P LP P GP
Sbjct: 345 VFIDTDG--AVISGYPGDPGMPG---LPGLKGDEGIQGLPGPSGIPGLPALPGVPGALGP 399
Query: 69 SSAPDLPGPSSAPDL--------PGPSSAPDLPG--------------PSSAPDLP---- 102
P L G +P PG P LPG ++ P P
Sbjct: 400 QGVPGLKGDQGSPGRTTVGTAGTPGRDGLPGLPGLRGPPGPAFETETLQNTEPGFPGLRG 459
Query: 103 --GPSSAPDLPGPSS---------------------------APDLPGPSSAPDLPGPSS 133
GP P L G LPG PG
Sbjct: 460 ERGPKGNPGLKGIKGDLGFCACDGGVPNTGPPGEPGMPGPPGLIGLPGLKGTRGDPGSGG 519
Query: 134 APDLPGPSSAPDLPGP---------------SSAPDLPGPSSAP---DLPGPSSAP---- 171
A GPS AP L GP SSA +PG P LPG AP
Sbjct: 520 A---QGPSGAPGLFGPPGPAGSKGDKGEPTFSSASGVPGEQGDPGPQGLPGEMGAPGKDG 576
Query: 172 ----------------DLPGPSSAPDLPGPSS--------APDLPGPSSAPDLPGPSSAP 207
PG P LPG LPG LPG
Sbjct: 577 IPGLPGLPGLPGDGGQGFPGEKGLPGLPGERGHSGPTGPPGIGLPGSPGPRGLPGDQGID 636
Query: 208 DLPGPSSAPDLPGPS---------------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
LPG P LPG + AP PGP A LPG P L G P
Sbjct: 637 GLPGQQGLPGLPGITLPCIIPETYGLSGLPGAPGFPGPKGARGLPGTPGQPGLRGNKGEP 696
Query: 253 DLPGPSSAPDLP------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST---VLGSYLG 303
PG P+LP G P PG LPG +P LPGP + G+ G
Sbjct: 697 GSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLPGKLGSPGLPGPKGAPGDIFGAENG 756
Query: 304 EAGHQ 308
G Q
Sbjct: 757 SPGEQ 761
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 65/169 (38%), Gaps = 4/169 (2%)
Query: 63 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 122
P PG S P LPG +A + G P LPGP L P + G + PG
Sbjct: 267 PGFPGISGPPGLPGLGTAGE-KGEKGIPGLPGPRGPMGLERLQGPPGIQGKKGSSGFPGL 325
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
+ P + G LPGP D G S P PG P L G LPGPS P
Sbjct: 326 NGLPGIKGEKGGIGLPGPDVFIDTDGAVISGYPGDPGMPGLPGLKGDEGIQGLPGPSGIP 385
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
LP P GP P L G +P +A PG P LPG
Sbjct: 386 GLPALPGVPGALGPQGVPGLKGDQGSPGRTTVGTA-GTPGRDGLPGLPG 433
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 69/183 (37%), Gaps = 10/183 (5%)
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
G P LPG PG S P LPG +A + G P LPGP L P
Sbjct: 259 GSKGEPGLPG------FPGISGPPGLPGLGTAGE-KGEKGIPGLPGPRGPMGLERLQGPP 311
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPG 229
+ G + PG + P + G LPGP D G S P PG P L G
Sbjct: 312 GIQGKKGSSGFPGLNGLPGIKGEKGGIGLPGPDVFIDTDGAVISGYPGDPGMPGLPGLKG 371
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
LPGPS P LP P GP P L G +P +A PG P
Sbjct: 372 DEGIQGLPGPSGIPGLPALPGVPGALGPQGVPGLKGDQGSPGRTTVGTA-GTPGRDGLPG 430
Query: 290 LPG 292
LPG
Sbjct: 431 LPG 433
>gi|193203538|ref|NP_493042.2| Protein Y53C10A.10 [Caenorhabditis elegans]
gi|158934259|emb|CAA22144.3| Protein Y53C10A.10 [Caenorhabditis elegans]
Length = 1561
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 128/357 (35%), Positives = 180/357 (50%), Gaps = 114/357 (31%)
Query: 35 APDLPGPSS-APDLPGPSSAPDLPGPS-----SAPDLPGPS-----SAPDLPGPS----- 78
P+ P P+ +P+ P S P+ PGP+ S P+ PGP+ S P+ PGP+
Sbjct: 1012 TPNWPSPNGPSPNGPNGPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGP 1071
Query: 79 SAPDLPGPS-----SAPDLPGPS-----SAPDLPGPS-----SAPDLPGPS-----SAPD 118
S P+ PGP+ S P+ PGP+ S P+ PGP+ S P+ PGP+ S P+
Sbjct: 1072 SDPNKPGPNGPNEPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGPSDPN 1131
Query: 119 LPGPS-----SAPDLPGPSSAPDLPGPSSAPDLPGPS-----SAPDLPGPS-----SAPD 163
PGP+ S P+ PGP+ P SS P+ PGP+ S P+ PGP+ S P+
Sbjct: 1132 KPGPNGPNGPSDPNKPGPNG----PNESSDPNKPGPNGPNEPSDPNKPGPNGPNGPSDPN 1187
Query: 164 LPGPS-----SAPDLPGPS-----SAPDLPGPS-----SAPDLPGPS-----SAPDLPGP 203
PGP+ S P+ PGP+ S P+ PGP+ S P+ PGP+ S P+ PGP
Sbjct: 1188 KPGPNGPNEPSDPNKPGPNGSNGPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNRPGP 1247
Query: 204 SS-----APDLPGPS-----SAPDLPGPS-----SAPDLPGPS-----SAPDLPGPS--- 240
+ P+ PGP+ S P+ PGP+ S P+ PGP+ S P+ PGP+
Sbjct: 1248 NGPNGPLDPNKPGPNGPNGPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPN 1307
Query: 241 --SAPDLPGPS-----SAPDLPGPS-----SAPDLPGPSSAPDLPGPSSAPDLPGPS 285
S P+ PGP+ S P+ PGP+ S P+ PGP+ P SS P+ PGP+
Sbjct: 1308 GPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNG----PNGSSDPNKPGPN 1360
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 128/357 (35%), Positives = 180/357 (50%), Gaps = 114/357 (31%)
Query: 44 APDLPGPSS-APDLPGPSSAPDLPGPS-----SAPDLPGPS-----SAPDLPGPS----- 87
P+ P P+ +P+ P S P+ PGP+ S P+ PGP+ S P+ PGP+
Sbjct: 1012 TPNWPSPNGPSPNGPNGPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGP 1071
Query: 88 SAPDLPGPS-----SAPDLPGPS-----SAPDLPGPS-----SAPDLPGPS-----SAPD 127
S P+ PGP+ S P+ PGP+ S P+ PGP+ S P+ PGP+ S P+
Sbjct: 1072 SDPNKPGPNGPNEPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGPSDPN 1131
Query: 128 LPGPS-----SAPDLPGPSSAPDLPGPSSAPDLPGPS-----SAPDLPGPS-----SAPD 172
PGP+ S P+ PGP+ P SS P+ PGP+ S P+ PGP+ S P+
Sbjct: 1132 KPGPNGPNGPSDPNKPGPNG----PNESSDPNKPGPNGPNEPSDPNKPGPNGPNGPSDPN 1187
Query: 173 LPGPS-----SAPDLPGPS-----SAPDLPGPS-----SAPDLPGPS-----SAPDLPGP 212
PGP+ S P+ PGP+ S P+ PGP+ S P+ PGP+ S P+ PGP
Sbjct: 1188 KPGPNGPNEPSDPNKPGPNGSNGPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNRPGP 1247
Query: 213 SS-----APDLPGPS-----SAPDLPGPS-----SAPDLPGPS-----SAPDLPGPS--- 249
+ P+ PGP+ S P+ PGP+ S P+ PGP+ S P+ PGP+
Sbjct: 1248 NGPNGPLDPNKPGPNGPNGPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPN 1307
Query: 250 --SAPDLPGPS-----SAPDLPGPS-----SAPDLPGPSSAPDLPGPSSAPDLPGPS 294
S P+ PGP+ S P+ PGP+ S P+ PGP+ P SS P+ PGP+
Sbjct: 1308 GPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNG----PNGSSDPNKPGPN 1360
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 144/286 (50%), Gaps = 93/286 (32%)
Query: 22 ERPLEPDLPGPS-----SAPDLPGPS-----SAPDLPGPS-----SAPDLPGPS-----S 61
P +P+ PGP+ S P+ PGP+ S P+ PGP+ S P+ PGP+ S
Sbjct: 1083 NEPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGPSDPNKPGPNGPNGPS 1142
Query: 62 APDLPGPSSAPDLPGPSSAPDLPGPS-----SAPDLPGPS-----SAPDLPGPS-----S 106
P+ PGP+ P SS P+ PGP+ S P+ PGP+ S P+ PGP+ S
Sbjct: 1143 DPNKPGPNG----PNESSDPNKPGPNGPNEPSDPNKPGPNGPNGPSDPNKPGPNGPNEPS 1198
Query: 107 APDLPGPS-----SAPDLPGPS-----SAPDLPGPS-----SAPDLPGPSS-----APDL 146
P+ PGP+ S P+ PGP+ S P+ PGP+ S P+ PGP+ P+
Sbjct: 1199 DPNKPGPNGSNGPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNRPGPNGPNGPLDPNK 1258
Query: 147 PGPS-----SAPDLPGPS-----SAPDLPGPS-----SAPDLPGPS-----SAPDLPGPS 186
PGP+ S P+ PGP+ S P+ PGP+ S P+ PGP+ S P+ PGP+
Sbjct: 1259 PGPNGPNGPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGPSDPNKPGPN 1318
Query: 187 -----SAPDLPGPS-----SAPDLPGPSSAPDLPGPSSAPDLPGPS 222
S P+ PGP+ S P+ PGP+ P SS P+ PGP+
Sbjct: 1319 GPNGPSDPNKPGPNGPNEPSDPNKPGPNG----PNGSSDPNKPGPN 1360
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 163/319 (51%), Gaps = 87/319 (27%)
Query: 61 SAPDLPGPSS-APDLPGPSSAPDLPGPS-----SAPDLPGPSSAPDLPGPS-SAPDLPGP 113
S P+ P P+ +P+ P S P+ PGPS S P+ P P+ D PS S P GP
Sbjct: 932 SDPNKPSPNGPSPNGPNGPSDPNKPGPSGPNGPSDPNKPSPNGPSDPVKPSPSGPSPNGP 991
Query: 114 SSAPDLPGPSS-APDLPGPSS-APDLPGPSS-APDLPGPSSAPDLPGPS-----SAPDLP 165
S P+ P P+ +P+ P P+ P+ P P+ +P+ P S P+ PGP+ S P+ P
Sbjct: 992 S--PNGPSPNGPSPNGPSPNGPTPNWPSPNGPSPNGPNGPSDPNKPGPNGPNGPSDPNKP 1049
Query: 166 GPS-----SAPDLPGPS-----SAPDLPGPS-----SAPDLPGPS-----SAPDLPGPS- 204
GP+ S P+ PGP+ S P+ PGP+ S P+ PGP+ S P+ PGP+
Sbjct: 1050 GPNGPNEPSDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGPNGPSDPNKPGPNG 1109
Query: 205 ----SAPDLPGPS-----SAPDLPGPS-----SAPDLPGP-----SSAPDLPGPS----- 240
S P+ PGP+ S P+ PGP+ S P+ PGP SS P+ PGP+
Sbjct: 1110 PNEPSDPNKPGPNGPNGPSDPNKPGPNGPNGPSDPNKPGPNGPNESSDPNKPGPNGPNEP 1169
Query: 241 SAPDLPGPS-----SAPDLPGPS-----SAPDLPGPS-----SAPDLPGPS-----SAPD 280
S P+ PGP+ S P+ PGP+ S P+ PGP+ S P+ PGP+ S P+
Sbjct: 1170 SDPNKPGPNGPNGPSDPNKPGPNGPNEPSDPNKPGPNGSNGPSDPNKPGPNGPNGPSDPN 1229
Query: 281 LPGPS-----SAPDLPGPS 294
PGP+ S P+ PGP+
Sbjct: 1230 KPGPNGPNEPSDPNRPGPN 1248
>gi|351699390|gb|EHB02309.1| Collagen alpha-1(IV) chain, partial [Heterocephalus glaber]
Length = 1636
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 105/301 (34%), Gaps = 38/301 (12%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P L G S P LPG P +PG PG + G P LPGP P LPG
Sbjct: 869 PGLTGQSGLPGLPGQQGTPGIPG------FPGLKGEMGIMGAPGQPGLPGPLGTPGLPGE 922
Query: 87 SSAPDLPG---PSSAPDLPGPSSAPDLPGP---------SSAPDLPGPSSAPDLPGPSSA 134
PG P P L G LPG S G GP+
Sbjct: 923 KGDHGFPGSSGPRGDPGLKGEKGDAGLPGKPGTMDKLDMGSVKGEKGDQGEKGQIGPTGD 982
Query: 135 PDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGP 185
G P +PG + P PGP P + G AP LPGP + P PG
Sbjct: 983 KGSRGDPGTPGVPGKDGQAGYPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGE 1042
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-----------PGPSSAPDLPGPSSAP 234
AP +PG P PG A G + P + G + P PG
Sbjct: 1043 KGAPGIPGLQGLPGSPGLKGAKGEKGQAGLPGIGIPGRPGDKGDQGLAGFPGSPGEKGEK 1102
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
G P PGP +P G +P LPG LPG S P + G + P PG S
Sbjct: 1103 GSAGMPGVPGSPGPKGSPGSVGYPGSPGLPGEKGDKGLPGLSGIPGVKGEAGLPGTPGLS 1162
Query: 295 S 295
Sbjct: 1163 G 1163
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 106/292 (36%), Gaps = 23/292 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPG 76
+ P +P LPGP P LPG PG P P L G LPG D
Sbjct: 901 IMGAPGQPGLPGPLGTPGLPGEKGDHGFPGSSGPRGDPGLKGEKGDAGLPGKPGTMDKLD 960
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSS 133
S G GP+ G P +PG + P PGP P + G
Sbjct: 961 MGSVKGEKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGYPGQPGPKGDPGISGTPG 1020
Query: 134 APDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----- 182
AP LPGP + P PG AP +PG P PG A G + P +
Sbjct: 1021 APGLPGPKGSVGGMGLPGTPGEKGAPGIPGLQGLPGSPGLKGAKGEKGQAGLPGIGIPGR 1080
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
PG L G +P G + +PG P PGP +P G +P LPG
Sbjct: 1081 PGDKGDQGLAGFPGSPGEKGEKGSAGMPG---VPGSPGPKGSPGSVGYPGSPGLPGEKGD 1137
Query: 243 PDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
LPG S P + G + P L GP+ PG P G P+ P
Sbjct: 1138 KGLPGLSGIPGVKGEAGLPGTPGLSGPAGQKGEPGSDGIPGSAGEKGEPETP 1189
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 89/252 (35%), Gaps = 31/252 (12%)
Query: 54 PDLPGPSSAPDLPGPSSAPDLPGPS------SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 107
P L G P PG D+PGP P L G S P LPG P +PG
Sbjct: 840 PGLKGEKGFPGFPG----LDMPGPKGDKGTQGLPGLTGQSGLPGLPGQQGTPGIPG---- 891
Query: 108 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 167
PG + G P LPGP P LPG PG S GP P L G
Sbjct: 892 --FPGLKGEMGIMGAPGQPGLPGPLGTPGLPGEKGDHGFPGSS------GPRGDPGLKGE 943
Query: 168 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSA 224
LPG D S G GP+ G P +PG +
Sbjct: 944 KGDAGLPGKPGTMDKLDMGSVKGEKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGY 1003
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSA 278
P PGP P + G AP LPGP + P PG AP +PG P PG A
Sbjct: 1004 PGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGAPGIPGLQGLPGSPGLKGA 1063
Query: 279 PDLPGPSSAPDL 290
G + P +
Sbjct: 1064 KGEKGQAGLPGI 1075
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 88/249 (35%), Gaps = 32/249 (12%)
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
P L G P PG D+PGP G P L G S P LPG P +PG
Sbjct: 840 PGLKGEKGFPGFPGL----DMPGPKGDK---GTQGLPGLTGQSGLPGLPGQQGTPGIPG- 891
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
PG + G P LPGP P LPG PG S GP P L
Sbjct: 892 -----FPGLKGEMGIMGAPGQPGLPGPLGTPGLPGEKGDHGFPGSS------GPRGDPGL 940
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--- 248
G LPG D S G GP+ G P +PG
Sbjct: 941 KGEKGDAGLPGKPGTMDKLDMGSVKGEKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQ 1000
Query: 249 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDLPG----PSSTVL 298
+ P PGP P + G AP LPGP + P PG AP +PG P S L
Sbjct: 1001 AGYPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGAPGIPGLQGLPGSPGL 1060
Query: 299 GSYLGEAGH 307
GE G
Sbjct: 1061 KGAKGEKGQ 1069
>gi|395855170|ref|XP_003800043.1| PREDICTED: collagen alpha-1(IV) chain [Otolemur garnettii]
Length = 1669
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 107/295 (36%), Gaps = 32/295 (10%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 83
P L G S P LPG P +PG P S ++ G P PGP +P LPG P
Sbjct: 851 PGLTGQSGLPGLPGQQGTPGIPGFPGSKGEMGVMGTPGQPGSPGPLGSPGLPGEKGDPGF 910
Query: 84 PG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
PG P P G LPG + D S G GP G
Sbjct: 911 PGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPVGEKGSRGD 970
Query: 141 SSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 191
P +PG P PGP P + G AP LPGP + P PG P +
Sbjct: 971 PGTPGVPGKDGQVGQPGHPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 1030
Query: 192 PGPSSAPDLPGPSSA--------------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
PG P LPG + P LPGP L G +P G + +P
Sbjct: 1031 PGQQGLPGLPGEKGSKGEKGQAGPPGIGIPGLPGPKGDQGLVGFPGSPGEKGEKGSIGIP 1090
Query: 238 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G P PG +P G +P LPG LPG P + G + P PG
Sbjct: 1091 G---MPGSPGSKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPGQPG 1142
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 95/268 (35%), Gaps = 25/268 (9%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D+PGP G P L G S P LPG P +PG PG + G
Sbjct: 837 DMPGPKGDK---GAQGLPGLTGQSGLPGLPGQQGTPGIPG------FPGSKGEMGVMGTP 887
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
P PGP +P LPG P PG P P G LPG + D S
Sbjct: 888 GQPGSPGPLGSPGLPGEKGDPGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMK 947
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLP 201
G GP G P +PG P PGP P + G AP LP
Sbjct: 948 GQKGDQGEKGQIGPVGEKGSRGDPGTPGVPGKDGQVGQPGHPGPKGDPGISGTPGAPGLP 1007
Query: 202 GPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
GP + P PG P +PG P LPG + G + P + P LP
Sbjct: 1008 GPKGSVGGMGLPGTPGEKGVPGIPGQQGLPGLPGEKGSKGEKGQAGPPGI----GIPGLP 1063
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
GP L G +P G + +PG
Sbjct: 1064 GPKGDQGLVGFPGSPGEKGEKGSIGIPG 1091
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 107/306 (34%), Gaps = 41/306 (13%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLP- 75
V P +P PGP +P LPG P PG P P G LPG + D
Sbjct: 883 VMGTPGQPGSPGPLGSPGLPGEKGDPGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVD 942
Query: 76 --------------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
G + PG P G P PGP P + G
Sbjct: 943 MGSMKGQKGDQGEKGQIGPVGEKGSRGDPGTPGVPGKDGQVGQPGHPGPKGDPGISGTPG 1002
Query: 116 APDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
AP LPGP + P PG P +PG P LPG + G + P +
Sbjct: 1003 APGLPGPKGSVGGMGLPGTPGEKGVPGIPGQQGLPGLPGEKGSKGEKGQAGPPGI----G 1058
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
P LPGP L G +P G + +PG P PG +P G +P LPG
Sbjct: 1059 IPGLPGPKGDQGLVGFPGSPGEKGEKGSIGIPG---MPGSPGSKGSPGSVGYPGSPGLPG 1115
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
LPG P + G + P P GP+ PG P G P +PG
Sbjct: 1116 EKGDKGLPGLDGIPGIKGEAGLPGQPGSTGPAGQKGEPGSDGIPGSAGEKGEPGVPG-RG 1174
Query: 287 APDLPG 292
P PG
Sbjct: 1175 FPGFPG 1180
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 98/267 (36%), Gaps = 35/267 (13%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSS 79
+P PGP P + G AP LPGP + P PG P +PG LPG
Sbjct: 985 QPGHPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPG---QQGLPG--- 1038
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
LPG + G + P + P LPGP L G +P G + +PG
Sbjct: 1039 ---LPGEKGSKGEKGQAGPPGI----GIPGLPGPKGDQGLVGFPGSPGEKGEKGSIGIPG 1091
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSS 196
P PG +P G +P LPG LPG P + G + P P GP+
Sbjct: 1092 ---MPGSPGSKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPGQPGSTGPAG 1148
Query: 197 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
PG P G P +PG P PG G P L G P +PG
Sbjct: 1149 QKGEPGSDGIPGSAGEKGEPGVPG-RGFPGFPGTKGDKGSKGEVGFPGLAG---TPGIPG 1204
Query: 257 PSSAPDLPGPSSAPDLPGPSSAPDLPG 283
P GP PGP LPG
Sbjct: 1205 PKGEQGFMGP------PGPQGQTGLPG 1225
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 108/334 (32%), Gaps = 71/334 (21%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSS--------------- 70
LPG P LPG P G AP +PG A P L G
Sbjct: 738 LPGLKGLPGLPGIPGTPGEKGNIGAPGVPGEQGALGPPGLQGIRGDHGPPGLPGPAGSPG 797
Query: 71 -----------------------APDLPGPSSAPDLPGPSSAPDLPGPS------SAPDL 101
P + G P PG D+PGP P L
Sbjct: 798 APGVGPPGVRGPPGGQGPPGASGPPGIKGEKGFPGFPG----LDMPGPKGDKGAQGLPGL 853
Query: 102 PGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLP-- 156
G S P LPG P +PG P S ++ G P PGP +P LPG P P
Sbjct: 854 TGQSGLPGLPGQQGTPGIPGFPGSKGEMGVMGTPGQPGSPGPLGSPGLPGEKGDPGFPGS 913
Query: 157 -GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 215
GP P G LPG + D S G GP G
Sbjct: 914 SGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPVGEKGSRGDPGT 973
Query: 216 PDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGP 266
P +PG P PGP P + G AP LPGP + P PG P +PG
Sbjct: 974 PGVPGKDGQVGQPGHPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGQ 1033
Query: 267 SSAPDLPGPSSAPDLPGPS-----SAPDLPGPSS 295
P LPG + G + P LPGP
Sbjct: 1034 QGLPGLPGEKGSKGEKGQAGPPGIGIPGLPGPKG 1067
>gi|296236156|ref|XP_002807954.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-6(IV) chain
[Callithrix jacchus]
Length = 1666
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 114/303 (37%), Gaps = 38/303 (12%)
Query: 15 YLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSA 71
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 638 YGPSGF---PGTPGFPGPKGSRGLPGTRGPPGSHGNKGKPGSPGLVHLPELPGFPGPRGE 694
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 130
LPG P LPG LPG +P LPG A D+ G + PG LPG
Sbjct: 695 KGLPG---FPGLPGKDG---LPGIIGSPGLPGSKGATGDIFGAENG--APGEQGLQGLPG 746
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPS- 186
L G S P L G P L GP +P PG P PG S + G S
Sbjct: 747 DKG---LIGDSGLPGLKGLHGKPGLLGPKGERGSPGTPGQVGEPGTPGSSGPYGIKGKSG 803
Query: 187 --SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
AP G S P G LPG LPG P PG L G +P
Sbjct: 804 LPGAPGFQGTSGHPGNKGTRGEKGLPGSLVKKGLPGLKGLPGNPG------LIGQKGSPG 857
Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGE 304
PG S P LPG G P +PG P +PG +PG + + G+
Sbjct: 858 SPGISGLPALPGLKGEKGSVGSLGFPGMPG---FPGIPGARGLKGIPGSTGKI-----GQ 909
Query: 305 AGH 307
+GH
Sbjct: 910 SGH 912
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 86/247 (34%), Gaps = 18/247 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--- 76
V+ +P P G P L G S PG G +P LPG S P L G
Sbjct: 988 VSGKPGPPGFMGIQGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLKGDNG 1047
Query: 77 ----PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
S +P L G G L G P G +PG P PG
Sbjct: 1048 RTLEISGSPGLKGQPGESGFKGAKGRDGLIGNMGFPGNKGKDGKVGVPGDVGLPGAPG-- 1105
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
P G P LPG S GP P L GP P PG LPG P
Sbjct: 1106 -FPGTTGIRGEPGLPGSSGHQGAIGPPGLPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTP 1164
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
GPS +PGP+ +PGP PG AP PG G P L GP+
Sbjct: 1165 GPSIT-GVPGPAG---IPGPKGEKGNPGIGIGAPGKPGQRGQ---KGDRGFPGLQGPAGL 1217
Query: 252 PDLPGPS 258
P PG S
Sbjct: 1218 PGAPGIS 1224
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 96/269 (35%), Gaps = 30/269 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPD 82
P PGP LPG P LPG +P LPG A D+ G + PG
Sbjct: 686 PGFPGPRGEKGLPGFPGLPGKDGLPGIIGSPGLPGSKGATGDIFGAENG--APGEQGLQG 743
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPG 139
LPG L G S P L G P L GP +P PG P PG S + G
Sbjct: 744 LPGDKG---LIGDSGLPGLKGLHGKPGLLGPKGERGSPGTPGQVGEPGTPGSSGPYGIKG 800
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
S P AP G S P G LPG LPG P PG
Sbjct: 801 KSGLP------GAPGFQGTSGHPGNKGTRGEKGLPGSLVKKGLPGLKGLPGNPG------ 848
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
L G +P PG S P LPG G P +PG P +PG +PG +
Sbjct: 849 LIGQKGSPGSPGISGLPALPGLKGEKGSVGSLGFPGMPG---FPGIPGARGLKGIPGSTG 905
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
G S P PG PGP P
Sbjct: 906 K---IGQSGHPGTPGEKGDRGNPGPVGIP 931
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 68/180 (37%), Gaps = 20/180 (11%)
Query: 137 LPGPSSAPDLPGPSSAPDLPG--PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG- 193
PG P LPG P LPG P LPGP LPG PG P L G
Sbjct: 572 FPGEKGLPGLPGEKGQPGLPGLPGIGLPGLPGPRG---LPGDKGKDGSPGQQGTPGLKGI 628
Query: 194 --PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
P P GPS P PG PGP + LPG P G P PG
Sbjct: 629 TLPCIIPRSYGPSGFPGTPG------FPGPKGSRGLPGTRGPPGSHGNKGKPGSPGLVHL 682
Query: 252 PDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQ 308
P+L PGP LPG P LPG P + G P G + + G+ G G Q
Sbjct: 683 PELPGFPGPRGEKGLPG---FPGLPGKDGLPGIIGSPGLPGSKGATGDIFGAENGAPGEQ 739
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 60/164 (36%), Gaps = 11/164 (6%)
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
G + PGP P + GP P L G P LPGP G P G
Sbjct: 234 GKKGSKGEPGPKGFPGISGPPGFPGLGTTGEKGEKGIPGLPGPRGPMGSEGVQGPPGKQG 293
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSA 260
+P PG + + G LPGP D+ G S P PG P L G
Sbjct: 294 KKGSPGFPGLNGFQGIEGEKGDIGLPGPDVFIDIDGAVISGNPGDPGVPGLPGLKGDEGI 353
Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG----PSSTVLGS 300
L GPS P LP S P GP P L G P T +G+
Sbjct: 354 QGLRGPSGVPGLPALSGVPGALGPQGFPGLKGDQGNPGRTTIGA 397
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 70/196 (35%), Gaps = 16/196 (8%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG LPG + + G P +PG S + + G +P LPG S
Sbjct: 985 IKGVSGKPGPPGFMGIQGLPGLKGSSGITG---FPGMPGESGSQGIRG---SPGLPGASG 1038
Query: 170 APDLPG-------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 222
P L G S +P L G G L G P G +PG
Sbjct: 1039 LPGLKGDNGRTLEISGSPGLKGQPGESGFKGAKGRDGLIGNMGFPGNKGKDGKVGVPGDV 1098
Query: 223 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
P PG P G P LPG S GP P L GP P PG LP
Sbjct: 1099 GLPGAPG---FPGTTGIRGEPGLPGSSGHQGAIGPPGLPGLIGPKGFPGFPGLHGLNGLP 1155
Query: 283 GPSSAPDLPGPSSTVL 298
G PGPS T +
Sbjct: 1156 GTKGTHGTPGPSITGV 1171
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 73/208 (35%), Gaps = 18/208 (8%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSA 80
P E L G L G S P L G P L GP +P PG P PG S
Sbjct: 736 PGEQGLQGLPGDKGLIGDSGLPGLKGLHGKPGLLGPKGERGSPGTPGQVGEPGTPGSSGP 795
Query: 81 PDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 137
+ G S AP G S P G LPG LPG P PG L
Sbjct: 796 YGIKGKSGLPGAPGFQGTSGHPGNKGTRGEKGLPGSLVKKGLPGLKGLPGNPG------L 849
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
G +P PG S P LPG G P +PG P +PG +PG +
Sbjct: 850 IGQKGSPGSPGISGLPALPGLKGEKGSVGSLGFPGMPG---FPGIPGARGLKGIPGSTGK 906
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
G S P PG PGP P
Sbjct: 907 ---IGQSGHPGTPGEKGDRGNPGPVGIP 931
>gi|326676899|ref|XP_683515.5| PREDICTED: collagen alpha-1(X) chain [Danio rerio]
Length = 659
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 90/243 (37%), Gaps = 32/243 (13%)
Query: 39 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPS 96
PG P PG S AP PG P GP A PG +P PGP+ S+P PGP
Sbjct: 88 PGKPGTPGAPGKSGAPGYPGEKGQPGPAGPQGARGAPG---SPGSPGPAGLSSPGKPGPH 144
Query: 97 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--------------APDLPGPSS 142
P GP P L G P LPG P P PG
Sbjct: 145 GMPGAMGPRGEPGLKGHPGIPGLPGQKGEPGHGYAGKPGGPGPMGPQGPSGQPGQPGVGK 204
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
PGPS P PG S P G +PGP PG AP PG + AP +PG
Sbjct: 205 ----PGPSGFPGEPGKSGMPGRDGSPGPMGMPGPKGHTGAPG-IGAPGKPGQNGAPGMPG 259
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--APDLPGPSSAPDLPGPSSAPDLPGPSSA 260
GPS P AP LPG +P +PG P G + PGP+
Sbjct: 260 QIGQKGPQGPSGQP------GAPGLPGVGKPGSPGMPGDRGVPGTSGTTGQKGEPGPTGH 313
Query: 261 PDL 263
+
Sbjct: 314 TGM 316
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 93/243 (38%), Gaps = 32/243 (13%)
Query: 48 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPS 105
PG P PG S AP PG P GP A PG +P PGP+ S+P PGP
Sbjct: 88 PGKPGTPGAPGKSGAPGYPGEKGQPGPAGPQGARGAPG---SPGSPGPAGLSSPGKPGPH 144
Query: 106 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL--------------PGPSSAPDLPGPSS 151
P GP P L G P LPG P GPS P PG
Sbjct: 145 GMPGAMGPRGEPGLKGHPGIPGLPGQKGEPGHGYAGKPGGPGPMGPQGPSGQPGQPGVGK 204
Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
PGPS P PG S P G +PGP PG AP PG + AP +PG
Sbjct: 205 ----PGPSGFPGEPGKSGMPGRDGSPGPMGMPGPKGHTGAPG-IGAPGKPGQNGAPGMPG 259
Query: 212 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--APDLPGPSSAPDLPGPSSAPDLPGPSSA 269
GPS P AP LPG +P +PG P G + PGP+
Sbjct: 260 QIGQKGPQGPSGQP------GAPGLPGVGKPGSPGMPGDRGVPGTSGTTGQKGEPGPTGH 313
Query: 270 PDL 272
+
Sbjct: 314 TGM 316
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 78/211 (36%), Gaps = 29/211 (13%)
Query: 17 PSTVTERPLEPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 74
P P P PGP+ S+P PGP P GP P L G P LPG P
Sbjct: 117 PQGARGAPGSPGSPGPAGLSSPGKPGPHGMPGAMGPRGEPGLKGHPGIPGLPGQKGEPGH 176
Query: 75 --------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
GPS P PG PGPS P PG S P G +P
Sbjct: 177 GYAGKPGGPGPMGPQGPSGQPGQPGVGK----PGPSGFPGEPGKSGMPGRDGSPGPMGMP 232
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-- 178
GP PG AP PG + AP +PG GPS P AP LPG
Sbjct: 233 GPKGHTGAPG-IGAPGKPGQNGAPGMPGQIGQKGPQGPSGQP------GAPGLPGVGKPG 285
Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
+P +PG P G + PGP+ +
Sbjct: 286 SPGMPGDRGVPGTSGTTGQKGEPGPTGHTGM 316
>gi|240848597|ref|NP_001155871.1| collagen alpha-1(IV) chain precursor [Gallus gallus]
Length = 1669
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 104/299 (34%), Gaps = 28/299 (9%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPD 82
+P +PG P LPGP + L G + A G P LPG P LPG +
Sbjct: 850 QPGVPGSVGLPGLPGPQGSVGLKGSAGAKGEMGVMGTPGLPGTPGPVGDRGLPGEKGSQG 909
Query: 83 LP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLP 138
L GP P + G LPG + D S G P DL GP+ L
Sbjct: 910 LKGVVGPQGEPGVKGDKGEAGLPGIPGSMDTMDMVSLKGQKGDPGEKGDL-GPTGEKGLR 968
Query: 139 GPSSAPDLPGPSSAPDLPG------------------PSSAPDLPGPSSAPDLPGPSSAP 180
G P +PG P PG G P PG P
Sbjct: 969 GEYGEPGIPGRDGEPGTPGQPGPKGDQGPPGYPGDPGIPGQKGSVGEMGLPGTPGEKGLP 1028
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDL--PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
+PG P PG G + P + PG PG + +P L G G
Sbjct: 1029 GIPGSPGTPGFPGQKGEKGDKGAAGFPGIGFPGSPGEKGEPGRTGSPGLSGDKGEKGNAG 1088
Query: 239 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
P PGP +P + G P L G LPG S P L G P +PGP+ ++
Sbjct: 1089 IPGMPGAPGPKGSPGIAGFPGNPGLHGAKGEKGLPGLSGIPGLKGEPGEPGVPGPAGSI 1147
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 78/221 (35%), Gaps = 5/221 (2%)
Query: 58 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL--PGPSSAPDLPGPSS 115
G P PG P +PG P PG G + P + PG PG +
Sbjct: 1014 GEMGLPGTPGEKGLPGIPGSPGTPGFPGQKGEKGDKGAAGFPGIGFPGSPGEKGEPGRTG 1073
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
+P L G G P PGP +P + G P L G LPG S P L G
Sbjct: 1074 SPGLSGDKGEKGNAGIPGMPGAPGPKGSPGIAGFPGNPGLHGAKGEKGLPGLSGIPGLKG 1133
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLPGPSSAPDLPGPSSA 233
P +PGP+ + G +PG + A G P PG G
Sbjct: 1134 EPGEPGVPGPAGSIGQKGEPGYDGIPGTAGAKGEQGVPGRGVPGYPGAKGDKGAKGEVGF 1193
Query: 234 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP 273
P PG P L G PGP LPG P SA + P
Sbjct: 1194 PGSPGIPGIPGLKGEQGYAGPPGPKGNQGLPGLPGSAIEGP 1234
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 95/276 (34%), Gaps = 56/276 (20%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--- 85
LPGP P +PGP+ +PG P LPG PG P G P LPG
Sbjct: 738 LPGPKGLPGIPGPAG---IPGEKGNPGLPGLRGEQGFPG---VPGQQGFRGDPGLPGLQG 791
Query: 86 --------------------------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 119
P P + G P +PG D+PGP
Sbjct: 792 LPGPQGSPGVGPPGLPGPAGQPGPEGPPGFPGIKGERGFPGIPG----LDMPGPKGD--- 844
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
G P +PG P LPGP + L G + A G P LPG PGP
Sbjct: 845 KGSQGQPGVPGSVGLPGLPGPQGSVGLKGSAGAKGEMGVMGTPGLPG------TPGPVGD 898
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG- 238
LPG + L G + GP P + G LPG + D S G
Sbjct: 899 RGLPGEKGSQGLKG------VVGPQGEPGVKGDKGEAGLPGIPGSMDTMDMVSLKGQKGD 952
Query: 239 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
P DL GP+ L G P +PG P PG
Sbjct: 953 PGEKGDL-GPTGEKGLRGEYGEPGIPGRDGEPGTPG 987
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 63/172 (36%), Gaps = 3/172 (1%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P E PG + +P L G G P PGP +P + G P L G L
Sbjct: 1063 PGEKGEPGRTGSPGLSGDKGEKGNAGIPGMPGAPGPKGSPGIAGFPGNPGLHGAKGEKGL 1122
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLPGPS 141
PG S P L G P +PGP+ + G +PG + A G P PG
Sbjct: 1123 PGLSGIPGLKGEPGEPGVPGPAGSIGQKGEPGYDGIPGTAGAKGEQGVPGRGVPGYPGAK 1182
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP 192
G P PG P L G PGP LPG P SA + P
Sbjct: 1183 GDKGAKGEVGFPGSPGIPGIPGLKGEQGYAGPPGPKGNQGLPGLPGSAIEGP 1234
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 98/292 (33%), Gaps = 58/292 (19%)
Query: 24 PLEPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA- 80
P P L G P LPGP P +PGP+ P G P L G P +PG
Sbjct: 722 PGTPGLQGQKGEPGVGLPGPKGLPGIPGPAGIPGEKGNPGLPGLRGEQGFPGVPGQQGFR 781
Query: 81 --PDLPG-----------------------------PSSAPDLPGPSSAPDLPGPSSAPD 109
P LPG P P + G P +PG D
Sbjct: 782 GDPGLPGLQGLPGPQGSPGVGPPGLPGPAGQPGPEGPPGFPGIKGERGFPGIPGL----D 837
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+PGP G P +PG P LPGP + L G + A G P LPG
Sbjct: 838 MPGPKGDK---GSQGQPGVPGSVGLPGLPGPQGSVGLKGSAGAKGEMGVMGTPGLPG--- 891
Query: 170 APDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 226
PGP LPG + L G P P + G LPG + D S
Sbjct: 892 ---TPGPVGDRGLPGEKGSQGLKGVVGPQGEPGVKGDKGEAGLPGIPGSMDTMDMVSLKG 948
Query: 227 LPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
G P DL GP+ L G P +PG P P PGP
Sbjct: 949 QKGDPGEKGDL-GPTGEKGLRGEYGEPGIPGRDGEP------GTPGQPGPKG 993
>gi|390457532|ref|XP_003731958.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(IV) chain-like
[Callithrix jacchus]
Length = 1669
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 104/282 (36%), Gaps = 25/282 (8%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D+PGP G P + G S P LPG P LPG PG + G
Sbjct: 837 DMPGPKGDK---GAQGLPGVTGQSGLPGLPGQQGTPGLPG------FPGSKGEMGVMGTP 887
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
P PGP +P +PG PG P P L G LPG + D +
Sbjct: 888 GQPGSPGPVGSPGIPGVKGDHGFPGSSGPRGDPGLKGDKGDVGLPGQPGSMDKVDMGTMK 947
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLP 201
G GP G +P +PG + P PGP P + G +P LP
Sbjct: 948 GQKGDQGEKGQIGPIGEKGSRGDPGSPGVPGKDGQAGQPGQPGPKGDPGISGTPGSPGLP 1007
Query: 202 GPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
GP + P PG P +PGP +P LPG A G + P + P LP
Sbjct: 1008 GPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGEKGAKGEKGQAGPPGI----GIPGLP 1063
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
G + G +P G + +PG +P L G +V
Sbjct: 1064 GDKGDQGIAGFPGSPGEKGEKGSVGIPGMPGSPGLKGSPGSV 1105
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 104/276 (37%), Gaps = 22/276 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
V P +P PGP +P +PG PG S GP P L G LPG
Sbjct: 883 VMGTPGQPGSPGPVGSPGIPGVKGDHGFPGSS------GPRGDPGLKGDKGDVGLPGQPG 936
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPD 136
+ D + G GP G +P +PG + P PGP P
Sbjct: 937 SMDKVDMGTMKGQKGDQGEKGQIGPIGEKGSRGDPGSPGVPGKDGQAGQPGQPGPKGDPG 996
Query: 137 LPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
+ G +P LPGP + P PG P +PGP +P LPG A G + P
Sbjct: 997 ISGTPGSPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGEKGAKGEKGQAGPPG 1056
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
+ P LPG + G +P G + +PG +P L G + PG
Sbjct: 1057 I----GIPGLPGDKGDQGIAGFPGSPGEKGEKGSVGIPGMPGSPGLKGSPGSVGYPG--- 1109
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
+P LPG LPG P + G + PGP+
Sbjct: 1110 SPGLPGEKGDKGLPGLDGIPGVKGEAGLLGTPGPTG 1145
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 94/243 (38%), Gaps = 26/243 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PGP P + G +P LPGP LPG +PG +PGP +P
Sbjct: 985 QPGQPGPKGDPGISGTPGSPGLPGPKGSVGGMGLPGTPGEKGVPG------IPGPQGSPG 1038
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG A G + P + P LPG + G +P G + +PG
Sbjct: 1039 LPGEKGAKGEKGQAGPPGI----GIPGLPGDKGDQGIAGFPGSPGEKGEKGSVGIPGMPG 1094
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+P L G + PG +P LPG LPG P + G + PGP+ G
Sbjct: 1095 SPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLLGTPGPT------G 1145
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P+ PG P G P LPG P PG A G PG + +P
Sbjct: 1146 PAGQKGXPGSDGIPGSAGEKGEPGLPG-RGFPGFPG---AKGDKGAKGEVGFPGLAGSPG 1201
Query: 263 LPG 265
+PG
Sbjct: 1202 IPG 1204
>gi|327274794|ref|XP_003222161.1| PREDICTED: collagen alpha-2(I) chain-like [Anolis carolinensis]
Length = 1477
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 98/261 (37%), Gaps = 14/261 (5%)
Query: 36 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 95
P PG S + GP A PG P G L G P G P PG
Sbjct: 260 PGKPGRSGERGVSGPQGARGFPGTPGLPGFKGIRGHNGLDGRKGEPGAQGTKGEPGAPGE 319
Query: 96 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPD 154
+ PG S A LPG PGP A G S+ P P GP + PG AP
Sbjct: 320 NG---TPGQSGARGLPGERGRVGAPGPVGARGSDG-SNGPSGPAGPIGSAGSPGFPGAPG 375
Query: 155 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 214
G + L GPS GP LPG S PG A + G A LPG +
Sbjct: 376 AKGEVGSAGLTGPSGP---AGPRGEAGLPGASGPVGPPGNPGANGINGAKGAAGLPGVAG 432
Query: 215 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
AP LPGP +PGPS G PGP+ + G + PG + A PG
Sbjct: 433 APGLPGPRG---IPGPSGPAGAAGTRGLTGEPGPAGS---KGETGNKGEPGSAGAAGNPG 486
Query: 275 PSSAPDLPGPSSAPDLPGPSS 295
PS G + P GPS
Sbjct: 487 PSGEEGKRGSTGEPGSSGPSG 507
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 88/232 (37%), Gaps = 16/232 (6%)
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
P PG S + GP A PG P G L G P G P PG
Sbjct: 260 PGKPGRSGERGVSGPQGARGFPGTPGLPGFKGIRGHNGLDGRKGEPGAQGTKGEPGAPGE 319
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPD 199
+ PG S A LPG PGP A G S+ P P GP + PG AP
Sbjct: 320 NG---TPGQSGARGLPGERGRVGAPGPVGARGSDG-SNGPSGPAGPIGSAGSPGFPGAPG 375
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
G + L GPS GP LPG S PG A + G A LPG +
Sbjct: 376 AKGEVGSAGLTGPSGP---AGPRGEAGLPGASGPVGPPGNPGANGINGAKGAAGLPGVAG 432
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSP 311
AP LPGP +PGPS G PGP+ + GE G++ P
Sbjct: 433 APGLPGPRG---IPGPSGPAGAAGTRGLTGEPGPAGS-----KGETGNKGEP 476
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 109/291 (37%), Gaps = 29/291 (9%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPD 82
P E PG S A LPG PGP A G S+ P P GP + PG AP
Sbjct: 317 PGENGTPGQSGARGLPGERGRVGAPGPVGARGSDG-SNGPSGPAGPIGSAGSPGFPGAPG 375
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
G + L GPS GP LPG S PG A + G A LPG +
Sbjct: 376 AKGEVGSAGLTGPSGP---AGPRGEAGLPGASGPVGPPGNPGANGINGAKGAAGLPGVAG 432
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
AP LPGP P GP+ A G + P G + PG + A PGPS
Sbjct: 433 APGLPGPRGIPGPSGPAGAAGTRGLTGEPGPAGSKGETGNKGEPGSAGAAGNPGPSGEEG 492
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP------------- 246
G + P GPS GP+ +PG P G + A L
Sbjct: 493 KRGSTGEPGSSGPS------GPAGLRGVPGSRGLPGSDGRAGAIGLAGNRGATGAAGAKG 546
Query: 247 --GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
G + P PG LPG S +P G + LPGP P GP+
Sbjct: 547 PNGDAGRPGEPGLMGPRGLPGQSGSPGPAGKEGSVGLPGPDGRPGPVGPAG 597
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 108/299 (36%), Gaps = 32/299 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E LPG S PG A + G A LPG + AP LPGP P GP+ A G
Sbjct: 397 EAGLPGASGPVGPPGNPGANGINGAKGAAGLPGVAGAPGLPGPRGIPGPSGPAGAAGTRG 456
Query: 86 PSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
+ P G + PG + A PGPS G + P GPS GP+
Sbjct: 457 LTGEPGPAGSKGETGNKGEPGSAGAAGNPGPSGEEGKRGSTGEPGSSGPS------GPAG 510
Query: 143 APDLPGPSSAPDLPGPSSAPDLP---------------GPSSAPDLPGPSSAPDLPGPSS 187
+PG P G + A L G + P PG LPG S
Sbjct: 511 LRGVPGSRGLPGSDGRAGAIGLAGNRGATGAAGAKGPNGDAGRPGEPGLMGPRGLPGQSG 570
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
+P G + LPGP P GP+ PG P GP+ P PG + G
Sbjct: 571 SPGPAGKEGSVGLPGPDGRPGPVGPAGPRGEPGNIGFPGPKGPNGEPGKPGDRGHVGVTG 630
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAG 306
A PGP GP+ G GP LPGPS V GEAG
Sbjct: 631 NRGA---PGPDGNNGAQGPAGVIGNTGSKGETGPAGPPGFQGLPGPSGPV-----GEAG 681
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 99/273 (36%), Gaps = 27/273 (9%)
Query: 34 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 93
AP G + L GPS GP LPG S PG A + G A LP
Sbjct: 372 GAPGAKGEVGSAGLTGPSGPA---GPRGEAGLPGASGPVGPPGNPGANGINGAKGAAGLP 428
Query: 94 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPS 150
G + AP LPGP P GP+ A G + P G + PG + A PGPS
Sbjct: 429 GVAGAPGLPGPRGIPGPSGPAGAAGTRGLTGEPGPAGSKGETGNKGEPGSAGAAGNPGPS 488
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP--------- 201
G + P GPS GP+ +PG P G + A L
Sbjct: 489 GEEGKRGSTGEPGSSGPS------GPAGLRGVPGSRGLPGSDGRAGAIGLAGNRGATGAA 542
Query: 202 ------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
G + P PG LPG S +P G + LPGP P GP+ P
Sbjct: 543 GAKGPNGDAGRPGEPGLMGPRGLPGQSGSPGPAGKEGSVGLPGPDGRPGPVGPAGPRGEP 602
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
G P GP+ P PG + G AP
Sbjct: 603 GNIGFPGPKGPNGEPGKPGDRGHVGVTGNRGAP 635
>gi|351699389|gb|EHB02308.1| Collagen alpha-2(IV) chain, partial [Heterocephalus glaber]
Length = 1705
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 69/188 (36%), Gaps = 12/188 (6%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PGP LPG LPG AP G P +PGP PGPS P LPG +
Sbjct: 774 PGPRGDTGLPGHPGRKGLPGEQGAPGFRGSQGMPGMPGPKGQLGFPGPSGLPGLPGRAGQ 833
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDL 146
PG PGP LPG S + LPG P PGP L G L
Sbjct: 834 HGFPG------APGPEGPLGLPGVSGSEGLPGDRGDPGDTGTPGPVGMKGLAGDRGDTGL 887
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
G P PG +PG P L G +P + G L G P G +
Sbjct: 888 VGDQGRPGDPGFKGMDGMPG---IPGLKGDRGSPGMQGFQGMIGLRGQPGTPGTKGQAGF 944
Query: 207 PDLPGPSS 214
LPGP
Sbjct: 945 FGLPGPKG 952
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 65/179 (36%), Gaps = 12/179 (6%)
Query: 129 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
PGP LPG LPG AP G P +PGP PGPS P LPG +
Sbjct: 774 PGPRGDTGLPGHPGRKGLPGEQGAPGFRGSQGMPGMPGPKGQLGFPGPSGLPGLPGRAGQ 833
Query: 189 ---PDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSA 242
P PGP LPG S + LPG P PGP L G L G
Sbjct: 834 HGFPGAPGPEGPLGLPGVSGSEGLPGDRGDPGDTGTPGPVGMKGLAGDRGDTGLVGDQGR 893
Query: 243 PDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
P PG P L G +P + G L G P G + LPGP
Sbjct: 894 PGDPGFKGMDGMPGIPGLKGDRGSPGMQGFQGMIGLRGQPGTPGTKGQAGFFGLPGPKG 952
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 102/288 (35%), Gaps = 33/288 (11%)
Query: 27 PDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP 84
P +PG + P LPG P + G P PG P + GP PG S D
Sbjct: 1007 PGVPGQAGVPGLPGRPGHIKGIKGDIGVPGSPGLPGFPGVTGPPGVIGFPGFTGSRGDKG 1066
Query: 85 GPSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
P S+ D DLPG +P L G PG G
Sbjct: 1067 APGSSGLYGDDGLTGDFGDIGDTIDLPG---SPGLKGERGIAGTPGLKGFFGERGAHGEV 1123
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
PG + L GP P L G + P L G PG P G P +PG
Sbjct: 1124 GFPGITG---LAGPQGQPGLKGQTGFPGLTGLQGPQGDPGQIGFPGEKGADGWPGVPGLP 1180
Query: 196 SAPDLPGPSSAPDLPGPSS-----APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
P L G S LPGP D+PG P PGPS D P PG +
Sbjct: 1181 GFPGLRGISGLHGLPGPKGFTGSPGADMPGD---PGFPGPSG--DRGDPGEPNTFPGSTG 1235
Query: 251 APDLPGPSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPG 292
AP G AP GP+ P + G PS+ LPG +P + G
Sbjct: 1236 APGQKGEQGAPGERGPAGRPGMQGFPGISPPSNISGLPGDVGSPGIFG 1283
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 97/279 (34%), Gaps = 24/279 (8%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLP 84
DLPG G + P L G G P L GP P L G + P L
Sbjct: 1091 DLPGSPGLKGERGIAGTPGLKGFFGERGAHGEVGFPGITGLAGPQGQPGLKGQTGFPGLT 1150
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
G PG P G P +PG P L G S LPGP PG
Sbjct: 1151 GLQGPQGDPGQIGFPGEKGADGWPGVPGLPGFPGLRGISGLHGLPGPKGFTGSPG----A 1206
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-- 202
D+PG P PGPS D P PG + AP G AP GP+ P + G
Sbjct: 1207 DMPGD---PGFPGPSG--DRGDPGEPNTFPGSTGAPGQKGEQGAPGERGPAGRPGMQGFP 1261
Query: 203 ----PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
PS+ LPG +P + G GP PGP++ G + + PG
Sbjct: 1262 GISPPSNISGLPGDVGSPGIFGLKGYQGPQGP------PGPAALQGSKGDAGSGGAPGVV 1315
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
G PG P GP P L G + +
Sbjct: 1316 GTKGWIGDQGPQGRPGVFGVPGEKGPRGEPGLMGSTGST 1354
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 95/270 (35%), Gaps = 21/270 (7%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
L GP P L G + P L G PG P G P +PG P L G S
Sbjct: 1131 LAGPQGQPGLKGQTGFPGLTGLQGPQGDPGQIGFPGEKGADGWPGVPGLPGFPGLRGISG 1190
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
LPGP PG D+PG P PGPS D P PG + AP G
Sbjct: 1191 LHGLPGPKGFTGSPG----ADMPGD---PGFPGPSG--DRGDPGEPNTFPGSTGAPGQKG 1241
Query: 149 PSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
AP GP+ P + G PS+ LPG +P + G GP PG
Sbjct: 1242 EQGAPGERGPAGRPGMQGFPGISPPSNISGLPGDVGSPGIFGLKGYQGPQGP------PG 1295
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P++ G + + PG G PG P GP P L G + +
Sbjct: 1296 PAALQGSKGDAGSGGAPGVVGTKGWIGDQGPQGRPGVFGVPGEKGPRGEPGLMGSTGSTG 1355
Query: 263 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G G P PG +P + G
Sbjct: 1356 AVGDRGPKGPKGDQGFPGAPGLVGSPGIAG 1385
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 95/259 (36%), Gaps = 30/259 (11%)
Query: 64 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 123
DLPG +P L G PG G PG + L GP P L G +
Sbjct: 1091 DLPG---SPGLKGERGIAGTPGLKGFFGERGAHGEVGFPGITG---LAGPQGQPGLKGQT 1144
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS----- 178
P L G PG P G P +PG P L G S LPGP
Sbjct: 1145 GFPGLTGLQGPQGDPGQIGFPGEKGADGWPGVPGLPGFPGLRGISGLHGLPGPKGFTGSP 1204
Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
D+PG P PGPS D P PG + AP G AP GP+ P + G
Sbjct: 1205 GADMPGD---PGFPGPSG--DRGDPGEPNTFPGSTGAPGQKGEQGAPGERGPAGRPGMQG 1259
Query: 239 ------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
PS+ LPG +P + G GP PGP++ G + + PG
Sbjct: 1260 FPGISPPSNISGLPGDVGSPGIFGLKGYQGPQGP------PGPAALQGSKGDAGSGGAPG 1313
Query: 293 PSSTVLGSYLGEAGHQKSP 311
T ++G+ G Q P
Sbjct: 1314 VVGTK--GWIGDQGPQGRP 1330
>gi|431913213|gb|ELK14895.1| Collagen alpha-1(IV) chain [Pteropus alecto]
Length = 1521
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 101/304 (33%), Gaps = 47/304 (15%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P L G S P LPG P LPG PGP + G P PGP+ P PG
Sbjct: 689 PGLTGQSGLPGLPGQQGTPGLPG------FPGPKGEMGVMGTPGQPGSPGPAGVPGSPGE 742
Query: 87 SSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
PG P P G LPG + D + G GP+
Sbjct: 743 KGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDQVDMETMKGQKGDQGEKGQIGPTGD 802
Query: 144 PDLPGPSSAPDLPGPSSAPD------------------------LPGPSSAPDLPGPSSA 179
G P + AP GP P + G A
Sbjct: 803 KGSRGDPGTPGMXXXXXAPWAARYEVEFKFTSTERARAEEMLILFIGPKGDPGISGTPGA 862
Query: 180 PDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-----P 228
P LPGP + P PG P +PGP P LPG A G + P + P
Sbjct: 863 PGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGVPGLPGDKGAKGEKGQAGLPGIGIPGRP 922
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
G P + G +P G + LPG P PGP +P G +P LPG
Sbjct: 923 GDKGDPGIAGFPGSPGEKGEKGSTGLPG---MPGSPGPKGSPGSAGYPGSPGLPGEKGDK 979
Query: 289 DLPG 292
LPG
Sbjct: 980 GLPG 983
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 84/260 (32%), Gaps = 24/260 (9%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D+PGP G P L G S P LPG P LPG PGP + G
Sbjct: 675 DMPGPKGDK---GTQGLPGLTGQSGLPGLPGQQGTPGLPG------FPGPKGEMGVMGTP 725
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
P PGP+ P PG PG S GP P G LPG + D
Sbjct: 726 GQPGSPGPAGVPGSPGEKGDHGFPGSS------GPRGDPGFKGDKGDVGLPGKPGSMDQV 779
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
+ G GP+ G P + AP A
Sbjct: 780 DMETMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGMXXXXXAPWAARYEVEFKFTSTERAR 839
Query: 208 D------LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
GP P + G AP LPGP + G P PG P +PGP P
Sbjct: 840 AEEMLILFIGPKGDPGISGTPGAPGLPGPKGSV---GGMGLPGTPGEKGVPGIPGPQGVP 896
Query: 262 DLPGPSSAPDLPGPSSAPDL 281
LPG A G + P +
Sbjct: 897 GLPGDKGAKGEKGQAGLPGI 916
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 88/277 (31%), Gaps = 46/277 (16%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 97
+ G P PG D+PGP G P L G S P LPG P LPG
Sbjct: 662 VKGEKGFPGFPG----LDMPGPKGD---KGTQGLPGLTGQSGLPGLPGQQGTPGLPG--- 711
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
PGP + G P PGP+ P PG PG S GP P G
Sbjct: 712 ---FPGPKGEMGVMGTPGQPGSPGPAGVPGSPGEKGDHGFPGSS------GPRGDPGFKG 762
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
LPG + D + G GP+ G P + AP
Sbjct: 763 DKGDVGLPGKPGSMDQVDMETMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGMXXXXXAPW 822
Query: 218 ------------------------LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
GP P + G AP LPGP + G P
Sbjct: 823 AARYEVEFKFTSTERARAEEMLILFIGPKGDPGISGTPGAPGLPGPKGS---VGGMGLPG 879
Query: 254 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
PG P +PGP P LPG A G + P +
Sbjct: 880 TPGEKGVPGIPGPQGVPGLPGDKGAKGEKGQAGLPGI 916
>gi|339247897|ref|XP_003375582.1| collagen alpha-2(IV) chain [Trichinella spiralis]
gi|316971040|gb|EFV54881.1| collagen alpha-2(IV) chain [Trichinella spiralis]
Length = 1810
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 108/292 (36%), Gaps = 32/292 (10%)
Query: 24 PLEPDLPGPSSAPDLPG---------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 74
P +PG AP L G P P + G LPG + + GP +P L
Sbjct: 562 PGRVGVPGRVGAPGLKGLPGDDCGKCPDGTPGVKGTRGDAGLPGYAG---IRGPEGSPGL 618
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPG----PSSAPDLPGP--SSAPDLPGPSSAPDL 128
PGP PG P L G AP PG A D G + P G P
Sbjct: 619 PGPKGKTGFPGRDGEPGLQGYRGAPGYPGRPGDKGDAGDAIGTPNAGRPGAKGEPGIPGF 678
Query: 129 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPD--LP 183
PG G +P LPG AP LPG P G PGP P P
Sbjct: 679 PGQRGPMGDAGRDGSPGLPG---APGLPGERGLPGSRAKNGRMGKAGFPGPKGEPGDSFP 735
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
GP P + G P +PG + GP +APD+ P LPG P G P
Sbjct: 736 GPPGIPGMKGIRGDPGIPGFAGPQGAAGP-AAPDMI-LKGEPGLPGRPGIPGQKGEFGYP 793
Query: 244 DLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P PGP+ GP S P +PGP P + G + P PG
Sbjct: 794 GLPGERGDPGYAGQPGPAGMIGETGP-SIPGIPGPKGYPGMKGSNGLPGFPG 844
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 108/295 (36%), Gaps = 40/295 (13%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG----PSSAPDLPGP--SSAPD 82
+ GP +P LPGP PG P L G AP PG A D G + P
Sbjct: 609 IRGPEGSPGLPGPKGKTGFPGRDGEPGLQGYRGAPGYPGRPGDKGDAGDAIGTPNAGRPG 668
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPG 139
G P PG G +P LPG AP LPG P G PG
Sbjct: 669 AKGEPGIPGFPGQRGPMGDAGRDGSPGLPG---APGLPGERGLPGSRAKNGRMGKAGFPG 725
Query: 140 PSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
P P PGP P + G P +PG + GP +APD+ P LPG
Sbjct: 726 PKGEPGDSFPGPPGIPGMKGIRGDPGIPGFAGPQGAAGP-AAPDMI-LKGEPGLPGRPGI 783
Query: 198 PDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
P G P LPG P PGP+ GP S P +PGP P + G + P
Sbjct: 784 PGQKGEFGYPGLPGERGDPGYAGQPGPAGMIGETGP-SIPGIPGPKGYPGMKGSNGLPGF 842
Query: 255 PGPSSAPDLPGPSSAPDLP-----------------GPSSAPDLPGPSSAPDLPG 292
PG P LPG P + GP + +PG P LPG
Sbjct: 843 PG---IPGLPGKDGIPGVGGTKGVKGDAIVGPIGPAGPQGSRGVPGERGVPGLPG 894
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 108/311 (34%), Gaps = 49/311 (15%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---------------SSAPDLPGPSSA 71
P LPGP PG P L G AP PG + P G
Sbjct: 616 PGLPGPKGKTGFPGRDGEPGLQGYRGAPGYPGRPGDKGDAGDAIGTPNAGRPGAKGEPGI 675
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPD- 127
P PG G +P LPG AP LPG P G PGP P
Sbjct: 676 PGFPGQRGPMGDAGRDGSPGLPG---APGLPGERGLPGSRAKNGRMGKAGFPGPKGEPGD 732
Query: 128 -LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
PGP P + G P +PG + GP +APD+ P LPG P G
Sbjct: 733 SFPGPPGIPGMKGIRGDPGIPGFAGPQGAAGP-AAPDMI-LKGEPGLPGRPGIPGQKGEF 790
Query: 187 SAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
P LPG P PGP+ GP S P +PGP P + G + P PG P
Sbjct: 791 GYPGLPGERGDPGYAGQPGPAGMIGETGP-SIPGIPGPKGYPGMKGSNGLPGFPG---IP 846
Query: 244 DLPGPSSAPDLP-----------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
LPG P + GP + +PG P LPG A G
Sbjct: 847 GLPGKDGIPGVGGTKGVKGDAIVGPIGPAGPQGSRGVPGERGVPGLPGQDGAEGDIGQKG 906
Query: 287 APDLPGPSSTV 297
P L G + +
Sbjct: 907 YPGLKGNAGSA 917
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 95/284 (33%), Gaps = 22/284 (7%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPD 82
E LPG P L G + +PG P + G S P LPG G S P
Sbjct: 1202 EDGLPGQKGYPGLAGNNGLEGMPGLPGMPGVKGEAGLSGIPGLPGVGGLKGNKGESGLPG 1261
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-- 140
PGP +PG + P + G +PG +PG P G + P LPG
Sbjct: 1262 YPGPKGDIGVPGKAGYPGVKGEVGIGGIPGKRGRDGIPG---IPGRKGDAGNPGLPGAPG 1318
Query: 141 ---SSAPDLPG-----PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
P PG + +P G LPG + G P G P +P
Sbjct: 1319 FGVKGDPGFPGLPGMEGTGSPGAKGERGEAGLPGMMGSAGASGDPGYPGQIGEKGVPGIP 1378
Query: 193 GP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
G A LPGP PG PG A PG PGP+ PG
Sbjct: 1379 GKRGKKGASGLPGPRGDAGYPGMKGQGGRPG---AEGRPGDFGVQGQPGPAGDAGFPGRK 1435
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
+PG P PG PG P PG PGP
Sbjct: 1436 GESGVPGLVGVPGFPGAKGDRGDPGSFGLPGFPGLKGDTGDPGP 1479
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 104/291 (35%), Gaps = 21/291 (7%)
Query: 18 STVTERPLEPDLPGPSSAPDLPGP------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 71
ER +P LPG ++ P PGP +PG + P LPG P +PG
Sbjct: 1124 GNAGERG-DPGLPGLAAKPGFPGPPGDAGVVGMKGIPGNAGTPGLPGMPGQPGIPGSKGE 1182
Query: 72 PDLPGPSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAP 126
G L G + LPG P L G + +PG P + G S P
Sbjct: 1183 RGNAGIPGVRGLDGAKVWGEDGLPGQKGYPGLAGNNGLEGMPGLPGMPGVKGEAGLSGIP 1242
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
LPG G S P PGP +PG + P + G +PG +PG
Sbjct: 1243 GLPGVGGLKGNKGESGLPGYPGPKGDIGVPGKAGYPGVKGEVGIGGIPGKRGRDGIPG-- 1300
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLPGPSSAPDLPGPSSAPD 244
P G + P LPG + + G P LPG + +P G LPG +
Sbjct: 1301 -IPGRKGDAGNPGLPG-APGFGVKGDPGFPGLPGMEGTGSPGAKGERGEAGLPGMMGSAG 1358
Query: 245 LPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G P G P +P G A LPGP PG PG
Sbjct: 1359 ASGDPGYPGQIGEKGVPGIPGKRGKKGASGLPGPRGDAGYPGMKGQGGRPG 1409
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 108/303 (35%), Gaps = 20/303 (6%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
G P LPG ++ P PGP P G +PG + P LPG P +PG
Sbjct: 1127 GERGDPGLPGLAAKPGFPGP---PGDAGVVGMKGIPGNAGTPGLPGMPGQPGIPGSKGER 1183
Query: 91 DLPGPSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPD 145
G L G + LPG P L G + +PG P + G S P
Sbjct: 1184 GNAGIPGVRGLDGAKVWGEDGLPGQKGYPGLAGNNGLEGMPGLPGMPGVKGEAGLSGIPG 1243
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
LPG G S P PGP +PG + P + G +PG +PG
Sbjct: 1244 LPGVGGLKGNKGESGLPGYPGPKGDIGVPGKAGYPGVKGEVGIGGIPGKRGRDGIPG--- 1300
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLPGPSSAPDLPGPSSAPDL 263
P G + P LPG + + G P LPG + +P G LPG +
Sbjct: 1301 IPGRKGDAGNPGLPG-APGFGVKGDPGFPGLPGMEGTGSPGAKGERGEAGLPGMMGSAGA 1359
Query: 264 PGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPAQ 320
G P G P +P G A LPGP Y G G P G E +P
Sbjct: 1360 SGDPGYPGQIGEKGVPGIPGKRGKKGASGLPGPRGDA--GYPGMKGQGGRP-GAEGRPGD 1416
Query: 321 ISF 323
Sbjct: 1417 FGV 1419
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 108/301 (35%), Gaps = 40/301 (13%)
Query: 23 RPLEPDLPGPSSAPDLPG----PSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPG 76
R EP L G AP PG A D G + P G P PG G
Sbjct: 630 RDGEPGLQGYRGAPGYPGRPGDKGDAGDAIGTPNAGRPGAKGEPGIPGFPGQRGPMGDAG 689
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPD--LPGPSSAPDLPGP 131
+P LPG AP LPG P G PGP P PGP P + G
Sbjct: 690 RDGSPGLPG---APGLPGERGLPGSRAKNGRMGKAGFPGPKGEPGDSFPGPPGIPGMKGI 746
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
P +PG + GP +APD+ P LPG P G P LPG P
Sbjct: 747 RGDPGIPGFAGPQGAAGP-AAPDMI-LKGEPGLPGRPGIPGQKGEFGYPGLPGERGDPGY 804
Query: 192 ---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-- 246
PGP+ GP S P +PGP P + G + P PG P LPG P +
Sbjct: 805 AGQPGPAGMIGETGP-SIPGIPGPKGYPGMKGSNGLPGFPG---IPGLPGKDGIPGVGGT 860
Query: 247 ---------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
GP + +PG P LPG A G P L G + + P
Sbjct: 861 KGVKGDAIVGPIGPAGPQGSRGVPGERGVPGLPGQDGAEGDIGQKGYPGLKGNAGSAGQP 920
Query: 292 G 292
G
Sbjct: 921 G 921
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 103/303 (33%), Gaps = 41/303 (13%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
GP + +PG P LPG A G P L G + + PG G P
Sbjct: 876 GPQGSRGVPGERGVPGLPGQDGAEGDIGQKGYPGLKGNAGSAGQPGLMGLKGAQGLDGLP 935
Query: 91 DLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSS---------APDLPGPSSAPDLP 138
LPG P + PG P L G P PG S A LPG + P L
Sbjct: 936 GLPGSDGRPGIVGSPGEPGRPGLRGNDGIPGAPGKSGPIGSAGVPGAAGLPGMAGTPGLK 995
Query: 139 GPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAP 189
G S P PG P LPG G S P + GP LPG S
Sbjct: 996 GESGEPGFPGAQGPQGDAGLPGRPGIDGQKGESGLPGIMGPKGMVGEVGLAGLPGRSGLA 1055
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------PGPSSAP 243
G G PG +A PG P GP+ P + G AP
Sbjct: 1056 GRKGEQGDHGFAGTKGTRGDPGYLAAQGPPGDMGDPGEVGPAGNPGVAGLQGVRGEKGAP 1115
Query: 244 D--LPGPSSA------PDLPGPSSAPDLPGP------SSAPDLPGPSSAPDLPGPSSAPD 289
PG S P LPG ++ P PGP +PG + P LPG P
Sbjct: 1116 GDSFPGASGNAGERGDPGLPGLAAKPGFPGPPGDAGVVGMKGIPGNAGTPGLPGMPGQPG 1175
Query: 290 LPG 292
+PG
Sbjct: 1176 IPG 1178
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 96/289 (33%), Gaps = 38/289 (13%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-----------------GPS 69
P +PGP P + G + P PG P LPG P + GP
Sbjct: 822 PGIPGPKGYPGMKGSNGLPGFPG---IPGLPGKDGIPGVGGTKGVKGDAIVGPIGPAGPQ 878
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
+ +PG P LPG A G P L G + + PG G P LP
Sbjct: 879 GSRGVPGERGVPGLPGQDGAEGDIGQKGYPGLKGNAGSAGQPGLMGLKGAQGLDGLPGLP 938
Query: 130 GPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSS---------APDLPGPSSAPDLPGPS 177
G P + PG P L G P PG S A LPG + P L G S
Sbjct: 939 GSDGRPGIVGSPGEPGRPGLRGNDGIPGAPGKSGPIGSAGVPGAAGLPGMAGTPGLKGES 998
Query: 178 SAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
P P GP LPG P + G LPG + G LPG S
Sbjct: 999 GEPGFPGAQGPQGDAGLPG---RPGIDGQKGESGLPGIMGPKGMVGEVGLAGLPGRSGLA 1055
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
G G PG +A PG P GP+ P + G
Sbjct: 1056 GRKGEQGDHGFAGTKGTRGDPGYLAAQGPPGDMGDPGEVGPAGNPGVAG 1104
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 95/262 (36%), Gaps = 23/262 (8%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P LPG P + G P PG +PG AP GP + +PG A LPG
Sbjct: 935 PGLPGSDGRPGIVGSPGEPGRPGLRGNDGIPG---APGKSGPIGSAGVPG---AAGLPGM 988
Query: 87 SSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
+ P L G S P PG P LPG P + G LPG + G
Sbjct: 989 AGTPGLKGESGEPGFPGAQGPQGDAGLPG---RPGIDGQKGESGLPGIMGPKGMVGEVGL 1045
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
LPG S G G PG +A PG P GP+ P + G
Sbjct: 1046 AGLPGRSGLAGRKGEQGDHGFAGTKGTRGDPGYLAAQGPPGDMGDPGEVGPAGNPGVAG- 1104
Query: 204 SSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
L G PG S A G P LPG ++ P PGP P G
Sbjct: 1105 -----LQGVRGEKGAPGDSFPGASGNAGERGDPGLPGLAAKPGFPGP---PGDAGVVGMK 1156
Query: 262 DLPGPSSAPDLPGPSSAPDLPG 283
+PG + P LPG P +PG
Sbjct: 1157 GIPGNAGTPGLPGMPGQPGIPG 1178
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 108/313 (34%), Gaps = 52/313 (16%)
Query: 10 FTEADYLPSTVTERPLEPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 66
++E + T PL+ L PG P PG P L GP PG + +
Sbjct: 455 YSEKGMKGNDGTIIPLKIYLHRYPGLRGEPGYPG---MPGLQGPPGEIGFPGST----IY 507
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
GP PG P PG P PG P P P PG P L G
Sbjct: 508 GPPGRDGYPGLDGIPGPPGERGDPGKPGLKGMPGTGKPLVGP--PGQIGFPGLQGDPGRV 565
Query: 127 DLPGPSSAPDLPG---------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 177
+PG AP L G P P + G LPG + + GP +P LPGP
Sbjct: 566 GVPGRVGAPGLKGLPGDDCGKCPDGTPGVKGTRGDAGLPGYAG---IRGPEGSPGLPGPK 622
Query: 178 SAPDLPGPSSAPDLPGPSSAPDLPG----PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 233
PG P L G AP PG A D G +A PG P +PG
Sbjct: 623 GKTGFPGRDGEPGLQGYRGAPGYPGRPGDKGDAGDAIGTPNA-GRPGAKGEPGIPG---- 677
Query: 234 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP------------DLPGPSSAPD- 280
PG G +P LPG AP LPG P PGP P
Sbjct: 678 --FPGQRGPMGDAGRDGSPGLPG---APGLPGERGLPGSRAKNGRMGKAGFPGPKGEPGD 732
Query: 281 -LPGPSSAPDLPG 292
PGP P + G
Sbjct: 733 SFPGPPGIPGMKG 745
>gi|402902464|ref|XP_003914122.1| PREDICTED: collagen alpha-2(IV) chain [Papio anubis]
Length = 1712
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 104/301 (34%), Gaps = 25/301 (8%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PGP +PG LPG P G P +PG P LPGPS P L GP
Sbjct: 781 PGPRGDAGVPGQPGFKGLPGDRGTPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLSGPPGQ 840
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
PG AP GP P +PG P G PGP + G L G
Sbjct: 841 HGFPG---APGQEGPLGLPGIPGLEGLPGDRGDPGDIGAPGPVGMKGVSGDRGDAGLAGE 897
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SA 206
P PG +PG P L G +P + G P L G + P G +
Sbjct: 898 RGHPGSPGFKGIDGMPG---TPGLKGERGSPGMDGFQGMPGLKGRAGFPGSKGEAGFFGI 954
Query: 207 PDLPGPSSAPDLPGPSS--------------APDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
P L G + P G D+ G G G P
Sbjct: 955 PGLKGLAGEPGFKGSRGDPGPPGPPPIILPGMKDIKGEKGDEGPMGLKGYLGAKGIQGMP 1014
Query: 253 DLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSTVLGSYLGEAGHQKS 310
+PG S P LPG P + G AP +PG P + G P T ++G G + +
Sbjct: 1015 GIPGLSGIPGLPGRPGHIKGVKGDIGAPGIPGLPGFPGVAGPPGITGFPGFIGSRGDKGA 1074
Query: 311 P 311
P
Sbjct: 1075 P 1075
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 85/240 (35%), Gaps = 10/240 (4%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
PGP P GP + + G PGP P GP LPG PG
Sbjct: 727 REGFPGP---PGFIGPRGSKGIVGLPGPDGPPGPIGLPGPDGPPGDRGLPGEVLGAQ-PG 782
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P +PG LPG P G P +PG P LPGPS P L GP
Sbjct: 783 PRGDAGVPGQPGFKGLPGDRGTPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLSGPPGQHG 842
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
PG AP GP P +PG P G PGP + G L G
Sbjct: 843 FPG---APGQEGPLGLPGIPGLEGLPGDRGDPGDIGAPGPVGMKGVSGDRGDAGLAGERG 899
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
P PG +PG P L G +P + G P L G + P G + +PG
Sbjct: 900 HPGSPGFKGIDGMPG---TPGLKGERGSPGMDGFQGMPGLKGRAGFPGSKGEAGFFGIPG 956
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 85/254 (33%), Gaps = 27/254 (10%)
Query: 27 PDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-- 81
P +PG P LPGPS P L PG P PG LPG LPG P
Sbjct: 814 PGMPGLKGQPGLPGPSGQPGLSGPPGQHGFPGAPGQEGPLGLPGIPGLEGLPGDRGDPGD 873
Query: 82 -DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
PGP + G L G P PG +PG P L G +P + G
Sbjct: 874 IGAPGPVGMKGVSGDRGDAGLAGERGHPGSPGFKGIDGMPG---TPGLKGERGSPGMDGF 930
Query: 141 SSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSS--------------APDLP 183
P L G + P G + P L G + P G D+
Sbjct: 931 QGMPGLKGRAGFPGSKGEAGFFGIPGLKGLAGEPGFKGSRGDPGPPGPPPIILPGMKDIK 990
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSA 242
G G G P +PG S P LPG P + G AP +PG
Sbjct: 991 GEKGDEGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGHIKGVKGDIGAPGIPGLPGF 1050
Query: 243 PDLPGPSSAPDLPG 256
P + GP PG
Sbjct: 1051 PGVAGPPGITGFPG 1064
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 80/237 (33%), Gaps = 28/237 (11%)
Query: 65 LPGPSSAPDLPGPSSAPDL------------------PGPSSAPDLPGPSSAPDLPGPSS 106
PGP P GP + + GP LPG PGP
Sbjct: 730 FPGP---PGFIGPRGSKGIVGLPGPDGPPGPIGLPGPDGPPGDRGLPGEVLGAQ-PGPRG 785
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
+PG LPG P G P +PG P LPGPS P L GP PG
Sbjct: 786 DAGVPGQPGFKGLPGDRGTPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLSGPPGQHGFPG 845
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 226
AP GP P +PG P G PGP + G L G P
Sbjct: 846 ---APGQEGPLGLPGIPGLEGLPGDRGDPGDIGAPGPVGMKGVSGDRGDAGLAGERGHPG 902
Query: 227 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
PG +PG P L G +P + G P L G + P G + +PG
Sbjct: 903 SPGFKGIDGMPG---TPGLKGERGSPGMDGFQGMPGLKGRAGFPGSKGEAGFFGIPG 956
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 82/246 (33%), Gaps = 27/246 (10%)
Query: 26 EPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSS 79
+P LPGPS P L PG P PG LPG LPG P PGP
Sbjct: 822 QPGLPGPSGQPGLSGPPGQHGFPGAPGQEGPLGLPGIPGLEGLPGDRGDPGDIGAPGPVG 881
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+ G L G P PG +PG P L G +P + G P L G
Sbjct: 882 MKGVSGDRGDAGLAGERGHPGSPGFKGIDGMPG---TPGLKGERGSPGMDGFQGMPGLKG 938
Query: 140 PSSAPDLPGPS---SAPDLPGPSSAPDLPGPSS--------------APDLPGPSSAPDL 182
+ P G + P L G + P G D+ G
Sbjct: 939 RAGFPGSKGEAGFFGIPGLKGLAGEPGFKGSRGDPGPPGPPPIILPGMKDIKGEKGDEGP 998
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
G G P +PG S P LPG P + G AP +PG P + GP
Sbjct: 999 MGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGHIKGVKGDIGAPGIPGLPGFPGVAGPPG 1058
Query: 242 APDLPG 247
PG
Sbjct: 1059 ITGFPG 1064
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 81/231 (35%), Gaps = 32/231 (13%)
Query: 16 LPSTVTERPLEPDL--PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 73
L E+ E D+ PG + + GP P L G + P L GP + PG P
Sbjct: 1117 LKGFFGEKGTEGDIGFPGITGVTGVQGP---PGLKGQTGFPGLTGPPGSQGEPGRIGLPG 1173
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------------------PSS 115
G P +PG P L G LPG P PG P
Sbjct: 1174 GKGDDGWPGIPGLPGFPGLRGIRGLHGLPGTKGFPGSPGADIHGDPGFPGPPGDRGNPGD 1233
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSS 169
A LPGP P G AP GP +P L G PS+ PG AP + G
Sbjct: 1234 ANTLPGPVGVPGQKGEQGAPGERGPPGSPGLQGFPGITPPSNISGAPGDKGAPGIFGLKG 1293
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
PGP + LPG PG AP PG GP P + G
Sbjct: 1294 YRGPPGPPGSAALPGSKGDAGNPG---APGTPGTKGWAGDSGPQGRPGVFG 1341
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 77/218 (35%), Gaps = 15/218 (6%)
Query: 76 GPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
G P +PG S P LPG P + G AP +PG P + GP PG +
Sbjct: 1009 GIQGMPGIPGLSGIPGLPGRPGHIKGVKGDIGAPGIPGLPGFPGVAGP------PGITGF 1062
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
P G PG + GP+ D +LPG P L G +PG
Sbjct: 1063 PGFIGSRGDKGAPGRAGLYGEIGPTG--DFGDIGDTINLPG---RPGLKGEQGTAGIPGL 1117
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
G PG + + GP P L G + P L GP + PG P
Sbjct: 1118 KGFFGEKGTEGDIGFPGITGVTGVQGP---PGLKGQTGFPGLTGPPGSQGEPGRIGLPGG 1174
Query: 255 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G P +PG P L G LPG P PG
Sbjct: 1175 KGDDGWPGIPGLPGFPGLRGIRGLHGLPGTKGFPGSPG 1212
>gi|74138797|dbj|BAE27208.1| unnamed protein product [Mus musculus]
Length = 1669
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 116/328 (35%), Gaps = 50/328 (15%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 83
P L G S P LPG P +PG P S ++ G P PGP+ P LPG L
Sbjct: 851 PGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGTPGLPGEKGDHGL 910
Query: 84 PG---PSSAPDLPGPSS---APDLPGPSSAPDL--------------------------- 110
PG P P G P +PG D+
Sbjct: 911 PGSSGPRGDPGFKGDKGDVGLPGMPGSMEHVDMGSMKGQKGDQGEKGQIGPTGDKGSRGD 970
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
PG P G + P PGP P L G +P LPGP + P PG P +
Sbjct: 971 PGTPGVPGKDGQAGHPGQPGPKGDPGLSGTPGSPGLPGPKGSVGGMGLPGSPGEKGVPGI 1030
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PG P PG A G S P + P PG L G +P G +
Sbjct: 1031 PGSQGVPGSPGEKGAKGEKGQSGLPGI----GIPGRPGDKGDQGLAGFPGSPGEKGEKGS 1086
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
PG P PGP +P G +P LPG LPG P + G + P PGP
Sbjct: 1087 AGTPG---MPGSPGPRGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGTPGP 1143
Query: 285 SSAPDLPG-PSSTVLGSYLGEAGHQKSP 311
+ G P S + GE G Q P
Sbjct: 1144 TGPAGQKGEPGSDGIPGSAGEKGEQGVP 1171
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 107/324 (33%), Gaps = 71/324 (21%)
Query: 28 DLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
D+PGP P L G S P LPG P +PG PG + G P
Sbjct: 837 DMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPG------FPGSKGEMGVMGTPGQP 890
Query: 82 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
PGP+ P LPG LPG P P G LPG +PG D+
Sbjct: 891 GSPGPAGTPGLPGEKGDHGLPGSSGPRGDPGFKGDKGDVGLPG------MPGSMEHVDM- 943
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS 195
S G GP+ G P +PG + P PGP P L G
Sbjct: 944 --GSMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLSGTP 1001
Query: 196 SAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---- 245
+P LPGP + P PG P +PG P PG A G S P +
Sbjct: 1002 GSPGLPGPKGSVGGMGLPGSPGEKGVPGIPGSQGVPGSPGEKGAKGEKGQSGLPGIGIPG 1061
Query: 246 ----------------------------------PGPSSAPDLPGPSSAPDLPGPSSAPD 271
PGP +P G +P LPG
Sbjct: 1062 RPGDKGDQGLAGFPGSPGEKGEKGSAGTPGMPGSPGPRGSPGNIGHPGSPGLPGEKGDKG 1121
Query: 272 LPGPSSAPDLPGPSSAPDLPGPSS 295
LPG P + G + P PGP+
Sbjct: 1122 LPGLDGVPGVKGEAGLPGTPGPTG 1145
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 111/320 (34%), Gaps = 66/320 (20%)
Query: 34 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAP 90
+P PGP PG P +PG A PG P LPGP LPG +P
Sbjct: 655 GSPGFPGPQGDRGFPGTPGRPGIPGEKGAVGQPG-IGFPGLPGPKGVDGLPGEIGRPGSP 713
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
PG + P PGP PG LPG P LPG P G P +PG
Sbjct: 714 GRPGFNGLPGNPGPQGQKGEPGIG----LPGLKGQPGLPGIPGTPGEKGSIGGPGVPGEQ 769
Query: 151 SAPDLPGPSSAPDLPGP--------------------------------SSAPDLPGPSS 178
PG PGP S P + G
Sbjct: 770 GLTGPPGLQGIRGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGQGPPGSSGPPGIKGEKG 829
Query: 179 APDLPGPSSAPDLPGPS------SAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--G 229
P PG D+PGP P L G S P LPG P +PG P S ++ G
Sbjct: 830 FPGFPG----LDMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMG 885
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
P PGP+ P LPG LPG S GP P G LPG
Sbjct: 886 TPGQPGSPGPAGTPGLPGEKGDHGLPGSS------GPRGDPGFKGDKGDVGLPG------ 933
Query: 290 LPGPSSTV-LGSYLGEAGHQ 308
+PG V +GS G+ G Q
Sbjct: 934 MPGSMEHVDMGSMKGQKGDQ 953
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 119/369 (32%), Gaps = 94/369 (25%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSA--------PDLPGPSSAPDLPGPSS---AP 72
P P PGP PG P +PG A P LPGP LPG +P
Sbjct: 654 PGSPGFPGPQGDRGFPGTPGRPGIPGEKGAVGQPGIGFPGLPGPKGVDGLPGEIGRPGSP 713
Query: 73 DLPGPSSAPDLPGPSSAPD-----LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 127
PG + P PGP LPG P LPG P G P +PG
Sbjct: 714 GRPGFNGLPGNPGPQGQKGEPGIGLPGLKGQPGLPGIPGTPGEKGSIGGPGVPGEQGLTG 773
Query: 128 LPGPSSAPDLPGP--------------------------------SSAPDLPGPSSAPDL 155
PG PGP S P + G P
Sbjct: 774 PPGLQGIRGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGQGPPGSSGPPGIKGEKGFPGF 833
Query: 156 PGPSSAPDLPGPSS------APDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSA 206
PG D+PGP P L G S P LPG P +PG P S ++ G
Sbjct: 834 PGL----DMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQ 889
Query: 207 PDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDL------ 254
P PGP+ P LPG LPG P P G P +PG D+
Sbjct: 890 PGSPGPAGTPGLPGEKGDHGLPGSSGPRGDPGFKGDKGDVGLPGMPGSMEHVDMGSMKGQ 949
Query: 255 ---------------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
PG P G + P PGP P L G +P LPGP
Sbjct: 950 KGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLSGTPGSPGLPGP 1009
Query: 294 SSTVLGSYL 302
+V G L
Sbjct: 1010 KGSVGGMGL 1018
>gi|161484654|ref|NP_034061.2| collagen alpha-1(IV) chain precursor [Mus musculus]
gi|126302535|sp|P02463.4|CO4A1_MOUSE RecName: Full=Collagen alpha-1(IV) chain; Contains: RecName:
Full=Arresten; Flags: Precursor
gi|74181102|dbj|BAE27820.1| unnamed protein product [Mus musculus]
gi|74181221|dbj|BAE27863.1| unnamed protein product [Mus musculus]
gi|74188621|dbj|BAE28055.1| unnamed protein product [Mus musculus]
Length = 1669
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 116/328 (35%), Gaps = 50/328 (15%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 83
P L G S P LPG P +PG P S ++ G P PGP+ P LPG L
Sbjct: 851 PGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGTPGLPGEKGDHGL 910
Query: 84 PG---PSSAPDLPGPSS---APDLPGPSSAPDL--------------------------- 110
PG P P G P +PG D+
Sbjct: 911 PGSSGPRGDPGFKGDKGDVGLPGMPGSMEHVDMGSMKGQKGDQGEKGQIGPTGDKGSRGD 970
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
PG P G + P PGP P L G +P LPGP + P PG P +
Sbjct: 971 PGTPGVPGKDGQAGHPGQPGPKGDPGLSGTPGSPGLPGPKGSVGGMGLPGSPGEKGVPGI 1030
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PG P PG A G S P + P PG L G +P G +
Sbjct: 1031 PGSQGVPGSPGEKGAKGEKGQSGLPGI----GIPGRPGDKGDQGLAGFPGSPGEKGEKGS 1086
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
PG P PGP +P G +P LPG LPG P + G + P PGP
Sbjct: 1087 AGTPG---MPGSPGPRGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGTPGP 1143
Query: 285 SSAPDLPG-PSSTVLGSYLGEAGHQKSP 311
+ G P S + GE G Q P
Sbjct: 1144 TGPAGQKGEPGSDGIPGSAGEKGEQGVP 1171
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 107/324 (33%), Gaps = 71/324 (21%)
Query: 28 DLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
D+PGP P L G S P LPG P +PG PG + G P
Sbjct: 837 DMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPG------FPGSKGEMGVMGTPGQP 890
Query: 82 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
PGP+ P LPG LPG P P G LPG +PG D+
Sbjct: 891 GSPGPAGTPGLPGEKGDHGLPGSSGPRGDPGFKGDKGDVGLPG------MPGSMEHVDM- 943
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS 195
S G GP+ G P +PG + P PGP P L G
Sbjct: 944 --GSMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLSGTP 1001
Query: 196 SAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---- 245
+P LPGP + P PG P +PG P PG A G S P +
Sbjct: 1002 GSPGLPGPKGSVGGMGLPGSPGEKGVPGIPGSQGVPGSPGEKGAKGEKGQSGLPGIGIPG 1061
Query: 246 ----------------------------------PGPSSAPDLPGPSSAPDLPGPSSAPD 271
PGP +P G +P LPG
Sbjct: 1062 RPGDKGDQGLAGFPGSPGEKGEKGSAGTPGMPGSPGPRGSPGNIGHPGSPGLPGEKGDKG 1121
Query: 272 LPGPSSAPDLPGPSSAPDLPGPSS 295
LPG P + G + P PGP+
Sbjct: 1122 LPGLDGVPGVKGEAGLPGTPGPTG 1145
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 111/320 (34%), Gaps = 66/320 (20%)
Query: 34 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAP 90
+P PGP PG P +PG A PG P LPGP LPG +P
Sbjct: 655 GSPGFPGPQGDRGFPGTPGRPGIPGEKGAVGQPG-IGFPGLPGPKGVDGLPGEIGRPGSP 713
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
PG + P PGP PG LPG P LPG P G P +PG
Sbjct: 714 GRPGFNGLPGNPGPQGQKGEPGIG----LPGLKGQPGLPGIPGTPGEKGSIGGPGVPGEQ 769
Query: 151 SAPDLPGPSSAPDLPGP--------------------------------SSAPDLPGPSS 178
PG PGP S P + G
Sbjct: 770 GLTGPPGLQGIRGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGQGPPGSSGPPGIKGEKG 829
Query: 179 APDLPGPSSAPDLPGPS------SAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--G 229
P PG D+PGP P L G S P LPG P +PG P S ++ G
Sbjct: 830 FPGFPG----LDMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMG 885
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
P PGP+ P LPG LPG S GP P G LPG
Sbjct: 886 TPGQPGSPGPAGTPGLPGEKGDHGLPGSS------GPRGDPGFKGDKGDVGLPG------ 933
Query: 290 LPGPSSTV-LGSYLGEAGHQ 308
+PG V +GS G+ G Q
Sbjct: 934 MPGSMEHVDMGSMKGQKGDQ 953
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 119/369 (32%), Gaps = 94/369 (25%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSA--------PDLPGPSSAPDLPGPSS---AP 72
P P PGP PG P +PG A P LPGP LPG +P
Sbjct: 654 PGSPGFPGPQGDRGFPGTPGRPGIPGEKGAVGQPGIGFPGLPGPKGVDGLPGEIGRPGSP 713
Query: 73 DLPGPSSAPDLPGPSSAPD-----LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 127
PG + P PGP LPG P LPG P G P +PG
Sbjct: 714 GRPGFNGLPGNPGPQGQKGEPGIGLPGLKGQPGLPGIPGTPGEKGSIGGPGVPGEQGLTG 773
Query: 128 LPGPSSAPDLPGP--------------------------------SSAPDLPGPSSAPDL 155
PG PGP S P + G P
Sbjct: 774 PPGLQGIRGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGQGPPGSSGPPGIKGEKGFPGF 833
Query: 156 PGPSSAPDLPGPSS------APDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSA 206
PG D+PGP P L G S P LPG P +PG P S ++ G
Sbjct: 834 PGL----DMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQ 889
Query: 207 PDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDL------ 254
P PGP+ P LPG LPG P P G P +PG D+
Sbjct: 890 PGSPGPAGTPGLPGEKGDHGLPGSSGPRGDPGFKGDKGDVGLPGMPGSMEHVDMGSMKGQ 949
Query: 255 ---------------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
PG P G + P PGP P L G +P LPGP
Sbjct: 950 KGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLSGTPGSPGLPGP 1009
Query: 294 SSTVLGSYL 302
+V G L
Sbjct: 1010 KGSVGGMGL 1018
>gi|556297|gb|AAA50292.1| alpha-1 type IV collagen [Mus musculus]
Length = 1669
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 116/328 (35%), Gaps = 50/328 (15%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 83
P L G S P LPG P +PG P S ++ G P PGP+ P LPG L
Sbjct: 851 PGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGTPGLPGEKGDHGL 910
Query: 84 PG---PSSAPDLPGPSS---APDLPGPSSAPDL--------------------------- 110
PG P P G P +PG D+
Sbjct: 911 PGSSGPRGDPGFKGDKGDVGLPGMPGSMEHVDMGSMKGQKGDQGEKGQIGPTGDKGSRGD 970
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
PG P G + P PGP P L G +P LPGP + P PG P +
Sbjct: 971 PGTPGVPGKDGQAGHPGQPGPKGDPGLSGTPGSPGLPGPKGSVGGMGLPGSPGEKGVPGI 1030
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PG P PG A G S P + P PG L G +P G +
Sbjct: 1031 PGSQGVPGSPGEKGAKGEKGQSGLPGI----GIPGRPGDKGDQGLAGFPGSPGEKGEKGS 1086
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
PG P PGP +P G +P LPG LPG P + G + P PGP
Sbjct: 1087 AGTPG---MPGSPGPRGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGTPGP 1143
Query: 285 SSAPDLPG-PSSTVLGSYLGEAGHQKSP 311
+ G P S + GE G Q P
Sbjct: 1144 TGPAGQKGEPGSDGIPGSAGEKGEQGVP 1171
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 107/324 (33%), Gaps = 71/324 (21%)
Query: 28 DLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
D+PGP P L G S P LPG P +PG PG + G P
Sbjct: 837 DMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPG------FPGSKGEMGVMGTPGQP 890
Query: 82 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
PGP+ P LPG LPG P P G LPG +PG D+
Sbjct: 891 GSPGPAGTPGLPGEKGDHGLPGSSGPRGDPGFKGDKGDVGLPG------MPGSMEHVDM- 943
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS 195
S G GP+ G P +PG + P PGP P L G
Sbjct: 944 --GSMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLSGTP 1001
Query: 196 SAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---- 245
+P LPGP + P PG P +PG P PG A G S P +
Sbjct: 1002 GSPGLPGPKGSVGGMGLPGSPGEKGVPGIPGSQGVPGSPGEKGAKGEKGQSGLPGIGIPG 1061
Query: 246 ----------------------------------PGPSSAPDLPGPSSAPDLPGPSSAPD 271
PGP +P G +P LPG
Sbjct: 1062 RPGDKGDQGLAGFPGSPGEKGEKGSAGTPGMPGSPGPRGSPGNIGHPGSPGLPGEKGDKG 1121
Query: 272 LPGPSSAPDLPGPSSAPDLPGPSS 295
LPG P + G + P PGP+
Sbjct: 1122 LPGLDGVPGVKGEAGLPGTPGPTG 1145
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 111/320 (34%), Gaps = 66/320 (20%)
Query: 34 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAP 90
+P PGP PG P +PG A PG P LPGP LPG +P
Sbjct: 655 GSPGFPGPQGDRGFPGTPGRPGIPGEKGAVGQPG-IGFPGLPGPKGVDGLPGEIGRPGSP 713
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
PG + P PGP PG LPG P LPG P G P +PG
Sbjct: 714 GRPGFNGLPGNPGPQGQKGEPGIG----LPGLKGQPGLPGIPGTPGEKGSIGGPGVPGEQ 769
Query: 151 SAPDLPGPSSAPDLPGP--------------------------------SSAPDLPGPSS 178
PG PGP S P + G
Sbjct: 770 GLTGPPGLQGIRGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGEGPPGSSGPPGIKGEKG 829
Query: 179 APDLPGPSSAPDLPGPS------SAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--G 229
P PG D+PGP P L G S P LPG P +PG P S ++ G
Sbjct: 830 FPGFPG----LDMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMG 885
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
P PGP+ P LPG LPG S GP P G LPG
Sbjct: 886 TPGQPGSPGPAGTPGLPGEKGDHGLPGSS------GPRGDPGFKGDKGDVGLPG------ 933
Query: 290 LPGPSSTV-LGSYLGEAGHQ 308
+PG V +GS G+ G Q
Sbjct: 934 MPGSMEHVDMGSMKGQKGDQ 953
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 119/369 (32%), Gaps = 94/369 (25%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSA--------PDLPGPSSAPDLPGPSS---AP 72
P P PGP PG P +PG A P LPGP LPG +P
Sbjct: 654 PGSPGFPGPQGDRGFPGTPGRPGIPGEKGAVGQPGIGFPGLPGPKGVDGLPGEIGRPGSP 713
Query: 73 DLPGPSSAPDLPGPSSAPD-----LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 127
PG + P PGP LPG P LPG P G P +PG
Sbjct: 714 GRPGFNGLPGNPGPQGQKGEPGIGLPGLKGQPGLPGIPGTPGEKGSIGGPGVPGEQGLTG 773
Query: 128 LPGPSSAPDLPGP--------------------------------SSAPDLPGPSSAPDL 155
PG PGP S P + G P
Sbjct: 774 PPGLQGIRGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGEGPPGSSGPPGIKGEKGFPGF 833
Query: 156 PGPSSAPDLPGPSS------APDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSA 206
PG D+PGP P L G S P LPG P +PG P S ++ G
Sbjct: 834 PGL----DMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQ 889
Query: 207 PDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDL------ 254
P PGP+ P LPG LPG P P G P +PG D+
Sbjct: 890 PGSPGPAGTPGLPGEKGDHGLPGSSGPRGDPGFKGDKGDVGLPGMPGSMEHVDMGSMKGQ 949
Query: 255 ---------------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
PG P G + P PGP P L G +P LPGP
Sbjct: 950 KGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLSGTPGSPGLPGP 1009
Query: 294 SSTVLGSYL 302
+V G L
Sbjct: 1010 KGSVGGMGL 1018
>gi|291227105|ref|XP_002733527.1| PREDICTED: fibrillar collagen [Saccoglossus kowalevskii]
Length = 2341
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 91/269 (33%), Gaps = 12/269 (4%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P + GP PG P G G P GP A LPG P G
Sbjct: 1194 PGMSGPKGHAGWPGKDGKPGEQGRQGERGESGSPGGPGAQGPMGARGLPGERGRPGQSGE 1253
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
+ A LPGP PGP A PGP + GP + PG + GP+ L
Sbjct: 1254 AGAAGLPGPQG---FPGPRGA---PGPQGSNGATGPKGSQGNPGVAGMKGAQGPTG---L 1304
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
G S LPGP+ G P G G + PGPS G S
Sbjct: 1305 TGDSGPRGLPGPAGEDGRRGERGEPGSQGTPGPQGEMGAAGVRGFPGPSGPAGAKGESGE 1364
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
P PGP + G + GP G + P G P G + +P GP
Sbjct: 1365 PGRPGPIGSKGSSGNTGDSGEIGPQGG---KGTTGDPGRAGQQGMPGARGLTGSPGKEGP 1421
Query: 267 SSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
S P PG PGP+ A G S
Sbjct: 1422 SGRPGTPGEPGKDGDPGPAGARGARGESG 1450
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 90/262 (34%), Gaps = 15/262 (5%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
GPS LPG P + GP PG P G G P GP A
Sbjct: 1183 GPSGPRGLPG---IPGMSGPKGHAGWPGKDGKPGEQGRQGERGESGSPGGPGAQGPMGAR 1239
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
LPG P G + A LPGP PGP A PGP + GP + PG +
Sbjct: 1240 GLPGERGRPGQSGEAGAAGLPGPQG---FPGPRGA---PGPQGSNGATGPKGSQGNPGVA 1293
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
GP+ L G S LPGP+ G P G G + P
Sbjct: 1294 GMKGAQGPTG---LTGDSGPRGLPGPAGEDGRRGERGEPGSQGTPGPQGEMGAAGVRGFP 1350
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
GPS G S P PGP + G + GP G + P G P
Sbjct: 1351 GPSGPAGAKGESGEPGRPGPIGSKGSSGNTGDSGEIGPQGG---KGTTGDPGRAGQQGMP 1407
Query: 271 DLPGPSSAPDLPGPSSAPDLPG 292
G + +P GPS P PG
Sbjct: 1408 GARGLTGSPGKEGPSGRPGTPG 1429
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 96/276 (34%), Gaps = 24/276 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
LPG P G + A LPGP P PGP + GP + PG + G
Sbjct: 1241 LPGERGRPGQSGEAGAAGLPGPQGFPGPRGAPGPQGSNGATGPKGSQGNPGVAGMKGAQG 1300
Query: 86 PS-----SAPD-LPGPSSAPDLPGPSSAPD---LPGP------SSAPDLPGPSSAPDLPG 130
P+ S P LPGP+ G P PGP + PGPS G
Sbjct: 1301 PTGLTGDSGPRGLPGPAGEDGRRGERGEPGSQGTPGPQGEMGAAGVRGFPGPSGPAGAKG 1360
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
S P PGP + G + GP G + P G P G + +P
Sbjct: 1361 ESGEPGRPGPIGSKGSSGNTGDSGEIGPQGG---KGTTGDPGRAGQQGMPGARGLTGSPG 1417
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
GPS P PG PGP+ A G S GP GP+ G +
Sbjct: 1418 KEGPSGRPGTPGEPGKDGDPGPAGARGARGESGKDGDAGPVGPTGPRGPAGERGATGATG 1477
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
+P G + P LPG P PG GP+
Sbjct: 1478 SPGFVGQTGQPGLPGE---PGQPGEQGVQGEAGPAG 1510
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 98/272 (36%), Gaps = 18/272 (6%)
Query: 25 LEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 84
+ P PGP +P PGP L G + P PG S P GP +P + GP
Sbjct: 1114 MAPGTPGPRGSPGSPGPRG---LQGFAGPPGEPGESGPPGPSGPHGSPGMAGPPGDDGDR 1170
Query: 85 GPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
G P P GPS LPG P + GP PG P G G
Sbjct: 1171 GSDGQPGTPGPVGPSGPRGLPG---IPGMSGPKGHAGWPGKDGKPGEQGRQGERGESGSP 1227
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
P GP A LPG P G + A LPGP PGP A PGP +
Sbjct: 1228 GGPGAQGPMGARGLPGERGRPGQSGEAGAAGLPGPQG---FPGPRGA---PGPQGSNGAT 1281
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
GP + PG + GP+ L G S LPGP+ G P G
Sbjct: 1282 GPKGSQGNPGVAGMKGAQGPTG---LTGDSGPRGLPGPAGEDGRRGERGEPGSQGTPGPQ 1338
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
G + PGPS G S P PGP
Sbjct: 1339 GEMGAAGVRGFPGPSGPAGAKGESGEPGRPGP 1370
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 83/271 (30%), Gaps = 12/271 (4%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
G + PGPS G S P PGP + G + GP G + P
Sbjct: 1342 GAAGVRGFPGPSGPAGAKGESGEPGRPGPIGSKGSSGNTGDSGEIGPQGGK---GTTGDP 1398
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
G P G + +P GPS P PG PGP+ A G S GP
Sbjct: 1399 GRAGQQGMPGARGLTGSPGKEGPSGRPGTPGEPGKDGDPGPAGARGARGESGKDGDAGPV 1458
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
GP+ G + +P G + P LPG P PG GP+
Sbjct: 1459 GPTGPRGPAGERGATGATGSPGFVGQTGQPGLPGE---PGQPGEQGVQGEAGPAGQIGPR 1515
Query: 211 GPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
G P GP G L G PG P G G +
Sbjct: 1516 GERGQPGERGTAGPRGERGTRGEQGPAGLDGSKGERGHPGERGTPGPNGKKGDRGFQGAA 1575
Query: 268 S---APDLPGPSSAPDLPGPSSAPDLPGPSS 295
A GP GP LPGP+
Sbjct: 1576 GSDGAKGSSGPKGVRGEGGPQGLQGLPGPAG 1606
Score = 38.1 bits (87), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 87/245 (35%), Gaps = 25/245 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EP LPGP A G P G S GP AP G LPG S G
Sbjct: 1817 EPGLPGPQGAQGSRGSMGMPGQKGES------GPRGAPGPQGEDGKTGLPGISGERGPVG 1870
Query: 86 PSS--APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
PS P P P+ G S +PG P + G PGP+ + GP A
Sbjct: 1871 PSGPLGPQGPRGDQGPE--GVSGKDGIPGVQGRPGIKGDRGNTGSPGPAG---MSGPMGA 1925
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
PGPS GP+ P GP GP A GPS P + G AP G
Sbjct: 1926 ---PGPSGEAGPQGPTGDPGPSGPV------GPEGARGSRGPSGEPGIAG---APGDAGI 1973
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
A G P L G + +PG PGP+ GP +P L G
Sbjct: 1974 QGARGAKGHRGFPGLQGIPGSMGVPGEDGMTGPPGPNGPRGATGPRGSPGLNGKDGPMGQ 2033
Query: 264 PGPSS 268
PGP
Sbjct: 2034 PGPEG 2038
>gi|350420331|ref|XP_003492475.1| PREDICTED: collagen alpha-2(IV) chain-like, partial [Bombus
impatiens]
Length = 1867
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 116/290 (40%), Gaps = 45/290 (15%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
PG + P +PG AP PG +P PG S G P PG + P PG +
Sbjct: 682 TPGTPATPGIPGSPGAPGTPG---SPGTPGTSGTASTSGTPGKPGTPGTAGTPGTPGTAG 738
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P PG S PG SS P PG AP PG +P PG + P +PG AP PG
Sbjct: 739 TPGTPGIS---GNPGTSSVPTSPG---APHTPG---SPGTPGTPATPGIPGSPGAPGTPG 789
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
P G P +PG S P +PG APD PG + P P PG S +P
Sbjct: 790 SPGTPGTLGTPGTPGIPGNSGTPSIPGSPGAPDTPGATGTPGT------PATPGISGSPG 843
Query: 209 LPGPSSAPDLPGPSSA---------------------PDLPGPSSAPDLPGPSSAPDLPG 247
PG +P PG S PG P +PG S P +PG
Sbjct: 844 APGTPDSPGTPGTSGTASTSGTPGTPGTPGTPGTSGTSGTPGTPGTPGIPGNSGTPSIPG 903
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
APD PG + P P PG S +P PG +P PG S T
Sbjct: 904 SPGAPDTPGATGTPGT------PATPGISGSPGAPGTPDSPGTPGTSGTA 947
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 109/266 (40%), Gaps = 36/266 (13%)
Query: 45 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 104
P +PG P PG S AP G SS P G PG S G S P P
Sbjct: 305 PGIPGSVGTPITPGSSGAP---GTSSTPGTSGTPGTSGTPGTSGTASTSGTPSKPGTPDT 361
Query: 105 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 164
+ P PG S PG SS P P AP PG +P PG + P +PG AP
Sbjct: 362 AGTPGTPGIS---GNPGTSSVPASP---EAPHTPG---SPGAPGTPATPGIPGSPGAPGT 412
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PG P PG S P +PG S P +PG + AP+ P + P P + P +PG A
Sbjct: 413 PGSPGTPGTPGTSGTPGIPGNSGTPSIPGSTGAPETPDSTGTPGTP---ATPGIPGSPGA 469
Query: 225 PDLPGPSSAPDLPGPSSA------------------PDLPGPSSAPDLPGPSSAPDLPGP 266
P PG P G +S P +PG S P +PG APD P
Sbjct: 470 PGTPGSPGTPSTSGTASTSGTPGTPGTPGTPDTPGTPGIPGNSGTPSIPGSPGAPDTPDS 529
Query: 267 SSAPDLPGPSSAPDLPGPSSAPDLPG 292
+ P P + P +PG AP PG
Sbjct: 530 TGTPGTP---ATPGIPGSPGAPGTPG 552
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 104/262 (39%), Gaps = 45/262 (17%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P P PG +P PG S G P PG + P PG + P PG S
Sbjct: 692 PGSPGAPGTPGSPGTPGTSGTASTSGTPGKPGTPGTAGTPGTPGTAGTPGTPGIS---GN 748
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
PG SS P PG AP PG +P PG + P +PG AP PG P G
Sbjct: 749 PGTSSVPTSPG---APHTPG---SPGTPGTPATPGIPGSPGAPGTPGSPGTPGTLGTPGT 802
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSA--- 197
P +PG S P +PG APD PG + P PG S +P PG +P PG S
Sbjct: 803 PGIPGNSGTPSIPGSPGAPDTPGATGTPGTPATPGISGSPGAPGTPDSPGTPGTSGTAST 862
Query: 198 ---------------------------PDLPGPSSAPDLPGPSSAPDLPGPSSAPD---L 227
P +PG S P +PG APD PG + P
Sbjct: 863 SGTPGTPGTPGTPGTSGTSGTPGTPGTPGIPGNSGTPSIPGSPGAPDTPGATGTPGTPAT 922
Query: 228 PGPSSAPDLPGPSSAPDLPGPS 249
PG S +P PG +P PG S
Sbjct: 923 PGISGSPGAPGTPDSPGTPGTS 944
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 109/260 (41%), Gaps = 27/260 (10%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDL---------PGPSSAPDLPGPSSAPDLPGPSSAPDL 74
P +P +PG P PG S AP PG S P G +S P PD
Sbjct: 302 PGKPGIPGSVGTPITPGSSGAPGTSSTPGTSGTPGTSGTPGTSGTASTSGTPSKPGTPDT 361
Query: 75 PGPSSAPDL---PGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
G P + PG SS AP PG +P PG + P +PG AP PG
Sbjct: 362 AGTPGTPGISGNPGTSSVPASPEAPHTPG---SPGAPGTPATPGIPGSPGAPGTPGSPGT 418
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
P PG S P +PG S P +PG + AP+ P + P P + P +PG AP PG
Sbjct: 419 PGTPGTSGTPGIPGNSGTPSIPGSTGAPETPDSTGTPGTP---ATPGIPGSPGAPGTPGS 475
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
P G +S PG P P P +PG S P +PG APD P + P
Sbjct: 476 PGTPSTSGTASTSGTPGTPGTPGTPDTPGTPGIPGNSGTPSIPGSPGAPDTPDSTGTPGT 535
Query: 246 PGPSSAPDLPGPSSAPDLPG 265
P + P +PG AP PG
Sbjct: 536 P---ATPGIPGSPGAPGTPG 552
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 76/172 (44%), Gaps = 6/172 (3%)
Query: 22 ERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
P P PG + P +PG AP PG P PG S P +PG S P +PG + AP
Sbjct: 387 HTPGSPGAPGTPATPGIPGSPGAPGTPGSPGTPGTPGTSGTPGIPGNSGTPSIPGSTGAP 446
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
+ P + P P + P +PG AP PG P G +S PG P P
Sbjct: 447 ETPDSTGTPGTP---ATPGIPGSPGAPGTPGSPGTPSTSGTASTSGTPGTPGTPGTPDTP 503
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
P +PG S P +PG APD P + P P + P +PG AP PG
Sbjct: 504 GTPGIPGNSGTPSIPGSPGAPDTPDSTGTPGTP---ATPGIPGSPGAPGTPG 552
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 120/288 (41%), Gaps = 42/288 (14%)
Query: 38 LPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA----- 89
+PG S P +PG APD P G P PG S +P PG +P PG S
Sbjct: 1081 IPGNSGTPSIPGSPGAPDTPDSTGTPGTPATPGISGSPGAPGTPDSPGTPGTSGTASTSG 1140
Query: 90 -------------------------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
P +PG S P +PG APD P + P P +
Sbjct: 1141 TPGTPGTPGTPGTSGTSGTPGTPGTPGIPGNSGTPSIPGSPGAPDTPDSTGTPGTP---A 1197
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
P +PG +AP PG P PG PD+PG S P +PG APD PG + P P
Sbjct: 1198 TPGIPGSPAAPGTPGSPGTPGTPGTPGTPDIPGNSGTPSIPGSPGAPDTPGATGTPGTP- 1256
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
+ P + G AP PG G S P +PG S P +PG APD P + P
Sbjct: 1257 --ATPGISGSPGAPGTPGSPGTSGTSGTSGTPGIPGNSDTPSIPGSPGAPDTPDSTGTPG 1314
Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P + P +PG SAP PG PD PG S + G ++ PG
Sbjct: 1315 TP---ATPGIPGSPSAPGTPGLPGTPDTPGISGTSGITGTAATNGTPG 1359
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 119/283 (42%), Gaps = 42/283 (14%)
Query: 47 LPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA----- 98
+PG S P +PG APD P G P PG S +P PG +P PG S
Sbjct: 1081 IPGNSGTPSIPGSPGAPDTPDSTGTPGTPATPGISGSPGAPGTPDSPGTPGTSGTASTSG 1140
Query: 99 -------------------------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
P +PG S P +PG APD P + P P +
Sbjct: 1141 TPGTPGTPGTPGTSGTSGTPGTPGTPGIPGNSGTPSIPGSPGAPDTPDSTGTPGTP---A 1197
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
P +PG +AP PG P PG PD+PG S P +PG APD PG + P P
Sbjct: 1198 TPGIPGSPAAPGTPGSPGTPGTPGTPGTPDIPGNSGTPSIPGSPGAPDTPGATGTPGTP- 1256
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
+ P + G AP PG G S P +PG S P +PG APD P + P
Sbjct: 1257 --ATPGISGSPGAPGTPGSPGTSGTSGTSGTPGIPGNSDTPSIPGSPGAPDTPDSTGTPG 1314
Query: 254 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
P + P +PG SAP PG PD PG S + G ++T
Sbjct: 1315 TP---ATPGIPGSPSAPGTPGLPGTPDTPGISGTSGITGTAAT 1354
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 100/337 (29%), Positives = 120/337 (35%), Gaps = 93/337 (27%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 97
+PG S P +PG APD P + P P + P +PG AP PG P G +S
Sbjct: 508 IPGNSGTPSIPGSPGAPDTPDSTGTPGTP---ATPGIPGSPGAPGTPGSPGTPSTSGTAS 564
Query: 98 APD---------------------------LPGPSSAPDLPGPSSAPDLPGP-------- 122
+PG S P +PG APD PG
Sbjct: 565 TSGTPGTPGTPGTPGTSGTSGTPGTPGTPGIPGNSGTPSIPGSPGAPDTPGATGTPGTPG 624
Query: 123 ----------------SSAPDLPGPSSAPD---------------------------LPG 139
S P +PG APD PG
Sbjct: 625 TPGTPGTPGTPGIPGNSGTPSIPGSPGAPDTPGATGTPGTPGTPGTPGTPETPDSTGTPG 684
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
+ P +PG AP PG +P PG S G P PG + P PG + P
Sbjct: 685 TPATPGIPGSPGAPGTPG---SPGTPGTSGTASTSGTPGKPGTPGTAGTPGTPGTAGTPG 741
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
PG S PG SS P PG AP PG +P PG + P +PG AP PG
Sbjct: 742 TPGIS---GNPGTSSVPTSPG---APHTPG---SPGTPGTPATPGIPGSPGAPGTPGSPG 792
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
P G P +PG S P +PG APD PG + T
Sbjct: 793 TPGTLGTPGTPGIPGNSGTPSIPGSPGAPDTPGATGT 829
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 136/361 (37%), Gaps = 102/361 (28%)
Query: 29 LPGPSSAPDLPGPSSAPDLP------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-- 80
+PG S P +PG APD P G + P +PG AP PG +P PG S
Sbjct: 994 IPGNSGTPSIPGSPGAPDTPDSTGTPGTPATPGIPGSPGAPGTPG---SPGTPGTSGTAS 1050
Query: 81 ----------------------------PDLPGPSSAPDLPGPSSAPDLP---GPSSAPD 109
P +PG S P +PG APD P G P
Sbjct: 1051 TSGTPGTPGTPGTPGTSGTSGTPGTPGTPGIPGNSGTPSIPGSPGAPDTPDSTGTPGTPA 1110
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSA------------------------------PDLPG 139
PG S +P PG +P PG S P +PG
Sbjct: 1111 TPGISGSPGAPGTPDSPGTPGTSGTASTSGTPGTPGTPGTPGTSGTSGTPGTPGTPGIPG 1170
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
S P +PG APD P + P P + P +PG +AP PG P PG PD
Sbjct: 1171 NSGTPSIPGSPGAPDTPDSTGTPGTP---ATPGIPGSPAAPGTPGSPGTPGTPGTPGTPD 1227
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPD--------------------- 235
+PG S P +PG APD PG + P PG S +P
Sbjct: 1228 IPGNSGTPSIPGSPGAPDTPGATGTPGTPATPGISGSPGAPGTPGSPGTSGTSGTSGTPG 1287
Query: 236 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
+PG S P +PG APD P + P P + P +PG SAP PG PD PG S
Sbjct: 1288 IPGNSDTPSIPGSPGAPDTPDSTGTPGTP---ATPGIPGSPSAPGTPGLPGTPDTPGISG 1344
Query: 296 T 296
T
Sbjct: 1345 T 1345
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 112/394 (28%), Positives = 136/394 (34%), Gaps = 123/394 (31%)
Query: 18 STVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 77
S+V P P PG +P PG + P +PG AP PG P G P +PG
Sbjct: 752 SSVPTSPGAPHTPG---SPGTPGTPATPGIPGSPGAPGTPGSPGTPGTLGTPGTPGIPGN 808
Query: 78 SSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSA--------- 125
S P +PG APD PG + P PG S +P PG +P PG S
Sbjct: 809 SGTPSIPGSPGAPDTPGATGTPGTPATPGISGSPGAPGTPDSPGTPGTSGTASTSGTPGT 868
Query: 126 ---------------------PDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSA 161
P +PG S P +PG APD PG + P PG S +
Sbjct: 869 PGTPGTPGTSGTSGTPGTPGTPGIPGNSGTPSIPGSPGAPDTPGATGTPGTPATPGISGS 928
Query: 162 PDLPGPSSAPDLPGPSSA------------------------------------------ 179
P PG +P PG S
Sbjct: 929 PGAPGTPDSPGTPGTSGTASTSGTPGTPGTSGTPGTSGTPGTPGTPGTPGTPGTPGTPGT 988
Query: 180 ---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
P +PG S P +PG APD P + P P + P +PG AP PG +P
Sbjct: 989 PGTPGIPGNSGTPSIPGSPGAPDTPDSTGTPGTP---ATPGIPGSPGAPGTPG---SPGT 1042
Query: 237 PGPSSA------------------------------PDLPGPSSAPDLPGPSSAPDLP-- 264
PG S P +PG S P +PG APD P
Sbjct: 1043 PGTSGTASTSGTPGTPGTPGTPGTSGTSGTPGTPGTPGIPGNSGTPSIPGSPGAPDTPDS 1102
Query: 265 -GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
G P PG S +P PG +P PG S T
Sbjct: 1103 TGTPGTPATPGISGSPGAPGTPDSPGTPGTSGTA 1136
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 118/312 (37%), Gaps = 66/312 (21%)
Query: 23 RPLEPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
+P PD G P + PG SS P P AP PG +P PG + P +PG
Sbjct: 355 KPGTPDTAGTPGTPGISGNPGTSSVPASP---EAPHTPG---SPGAPGTPATPGIPGSPG 408
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
AP PG P PG S P +PG S P +PG + AP+ P + P P + P +PG
Sbjct: 409 APGTPGSPGTPGTPGTSGTPGIPGNSGTPSIPGSTGAPETPDSTGTPGTP---ATPGIPG 465
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
AP PG P G +S PG P P P +PG S P +PG APD
Sbjct: 466 SPGAPGTPGSPGTPSTSGTASTSGTPGTPGTPGTPDTPGTPGIPGNSGTPSIPGSPGAPD 525
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--------------- 244
P + P P + P +PG AP PG P G +S
Sbjct: 526 TPDSTGTPGTP---ATPGIPGSPGAPGTPGSPGTPSTSGTASTSGTPGTPGTPGTPGTSG 582
Query: 245 ------------LPGPSSAPDLPGPSSAPDLPGP------------------------SS 268
+PG S P +PG APD PG S
Sbjct: 583 TSGTPGTPGTPGIPGNSGTPSIPGSPGAPDTPGATGTPGTPGTPGTPGTPGTPGIPGNSG 642
Query: 269 APDLPGPSSAPD 280
P +PG APD
Sbjct: 643 TPSIPGSPGAPD 654
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 107/380 (28%), Positives = 128/380 (33%), Gaps = 123/380 (32%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P P +PG AP PG P PG S P +PG S P +PG + AP+ P + P
Sbjct: 398 PATPGIPGSPGAPGTPGSPGTPGTPGTSGTPGIPGNSGTPSIPGSTGAPETPDSTGTPGT 457
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------------------PDLPGPSSA 125
P + P +PG AP PG P G +S P +PG S
Sbjct: 458 P---ATPGIPGSPGAPGTPGSPGTPSTSGTASTSGTPGTPGTPGTPDTPGTPGIPGNSGT 514
Query: 126 PDLPGPSSAPDLP------GPSSAPDLPGPSSAPDLPGPSSAPD---------------- 163
P +PG APD P G + P +PG AP PG P
Sbjct: 515 PSIPGSPGAPDTPDSTGTPGTPATPGIPGSPGAPGTPGSPGTPSTSGTASTSGTPGTPGT 574
Query: 164 --------------------LPGPSSAPDLPGPSSAPDLPGP------------------ 185
+PG S P +PG APD PG
Sbjct: 575 PGTPGTSGTSGTPGTPGTPGIPGNSGTPSIPGSPGAPDTPGATGTPGTPGTPGTPGTPGT 634
Query: 186 ------SSAPDLPGPSSAPD---------------------------LPGPSSAPDLPGP 212
S P +PG APD PG + P +PG
Sbjct: 635 PGIPGNSGTPSIPGSPGAPDTPGATGTPGTPGTPGTPGTPETPDSTGTPGTPATPGIPGS 694
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
AP PG +P PG S G P PG + P PG + P PG S
Sbjct: 695 PGAPGTPG---SPGTPGTSGTASTSGTPGKPGTPGTAGTPGTPGTAGTPGTPGIS---GN 748
Query: 273 PGPSSAPDLPGPSSAPDLPG 292
PG SS P PG AP PG
Sbjct: 749 PGTSSVPTSPG---APHTPG 765
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 108/287 (37%), Gaps = 60/287 (20%)
Query: 18 STVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 77
S+V P P PG +P PG + P +PG AP PG P PG S P +PG
Sbjct: 377 SSVPASPEAPHTPG---SPGAPGTPATPGIPGSPGAPGTPGSPGTPGTPGTSGTPGIPGN 433
Query: 78 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 137
S P +PG + AP+ P + P P + P +PG AP PG P G +S
Sbjct: 434 SGTPSIPGSTGAPETPDSTGTPGTP---ATPGIPGSPGAPGTPGSPGTPSTSGTASTSGT 490
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
PG P P P +PG S P +PG APD P + P P + P +PG A
Sbjct: 491 PGTPGTPGTPDTPGTPGIPGNSGTPSIPGSPGAPDTPDSTGTPGTP---ATPGIPGSPGA 547
Query: 198 PDLPGPSSAPDLPGPSSAPD---------------------------LPGPSSAPDLPGP 230
P PG P G +S +PG S P +PG
Sbjct: 548 PGTPGSPGTPSTSGTASTSGTPGTPGTPGTPGTSGTSGTPGTPGTPGIPGNSGTPSIPGS 607
Query: 231 SSAPDLPGP------------------------SSAPDLPGPSSAPD 253
APD PG S P +PG APD
Sbjct: 608 PGAPDTPGATGTPGTPGTPGTPGTPGTPGIPGNSGTPSIPGSPGAPD 654
>gi|148690109|gb|EDL22056.1| procollagen, type IV, alpha 1, isoform CRA_a [Mus musculus]
Length = 1141
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 116/328 (35%), Gaps = 50/328 (15%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 83
P L G S P LPG P +PG P S ++ G P PGP+ P LPG L
Sbjct: 323 PGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGTPGLPGEKGDHGL 382
Query: 84 PG---PSSAPDLPGPSS---APDLPGPSSAPDL--------------------------- 110
PG P P G P +PG D+
Sbjct: 383 PGSSGPRGDPGFKGDKGDVGLPGMPGSMEHVDMGSMKGQKGDQGEKGQIGPTGDKGSRGD 442
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
PG P G + P PGP P L G +P LPGP + P PG P +
Sbjct: 443 PGTPGVPGKDGQAGHPGQPGPKGDPGLSGTPGSPGLPGPKGSVGGMGLPGSPGEKGVPGI 502
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PG P PG A G S P + P PG L G +P G +
Sbjct: 503 PGSQGVPGSPGEKGAKGEKGQSGLPGI----GIPGRPGDKGDQGLAGFPGSPGEKGEKGS 558
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
PG P PGP +P G +P LPG LPG P + G + P PGP
Sbjct: 559 AGTPG---MPGSPGPRGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGTPGP 615
Query: 285 SSAPDLPG-PSSTVLGSYLGEAGHQKSP 311
+ G P S + GE G Q P
Sbjct: 616 TGPAGQKGEPGSDGIPGSAGEKGEQGVP 643
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 107/324 (33%), Gaps = 71/324 (21%)
Query: 28 DLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
D+PGP P L G S P LPG P +PG PG + G P
Sbjct: 309 DMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPG------FPGSKGEMGVMGTPGQP 362
Query: 82 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
PGP+ P LPG LPG P P G LPG +PG D+
Sbjct: 363 GSPGPAGTPGLPGEKGDHGLPGSSGPRGDPGFKGDKGDVGLPG------MPGSMEHVDM- 415
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS 195
S G GP+ G P +PG + P PGP P L G
Sbjct: 416 --GSMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLSGTP 473
Query: 196 SAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---- 245
+P LPGP + P PG P +PG P PG A G S P +
Sbjct: 474 GSPGLPGPKGSVGGMGLPGSPGEKGVPGIPGSQGVPGSPGEKGAKGEKGQSGLPGIGIPG 533
Query: 246 ----------------------------------PGPSSAPDLPGPSSAPDLPGPSSAPD 271
PGP +P G +P LPG
Sbjct: 534 RPGDKGDQGLAGFPGSPGEKGEKGSAGTPGMPGSPGPRGSPGNIGHPGSPGLPGEKGDKG 593
Query: 272 LPGPSSAPDLPGPSSAPDLPGPSS 295
LPG P + G + P PGP+
Sbjct: 594 LPGLDGVPGVKGEAGLPGTPGPTG 617
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 108/320 (33%), Gaps = 66/320 (20%)
Query: 34 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAP 90
+P PGP PG P +PG A PG P LPGP LPG +P
Sbjct: 127 GSPGFPGPQGDRGFPGTPGRPGIPGEKGAVGQPG-IGFPGLPGPKGVDGLPGEIGRPGSP 185
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
PG + P PGP PG LPG P LPG P G P +PG
Sbjct: 186 GRPGFNGLPGNPGPQGQKGEPGIG----LPGLKGQPGLPGIPGTPGEKGSIGGPGVPGEQ 241
Query: 151 SAPDLPGPSSAPDLPGP--------------------------------SSAPDLPGPSS 178
PG PGP S P + G
Sbjct: 242 GLTGPPGLQGIRGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGQGPPGSSGPPGIKGEKG 301
Query: 179 APDLPGPSSAPDLPGPS------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
P PG D+PGP P L G S P LPG P +PG PG
Sbjct: 302 FPGFPG----LDMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPG------FPGSKG 351
Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPD 289
+ G P PGP+ P LPG LP GP P G LPG
Sbjct: 352 EMGVMGTPGQPGSPGPAGTPGLPGEKGDHGLPGSSGPRGDPGFKGDKGDVGLPG------ 405
Query: 290 LPGPSSTV-LGSYLGEAGHQ 308
+PG V +GS G+ G Q
Sbjct: 406 MPGSMEHVDMGSMKGQKGDQ 425
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 119/369 (32%), Gaps = 94/369 (25%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSA--------PDLPGPSSAPDLPGPSS---AP 72
P P PGP PG P +PG A P LPGP LPG +P
Sbjct: 126 PGSPGFPGPQGDRGFPGTPGRPGIPGEKGAVGQPGIGFPGLPGPKGVDGLPGEIGRPGSP 185
Query: 73 DLPGPSSAPDLPGPSSAPD-----LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 127
PG + P PGP LPG P LPG P G P +PG
Sbjct: 186 GRPGFNGLPGNPGPQGQKGEPGIGLPGLKGQPGLPGIPGTPGEKGSIGGPGVPGEQGLTG 245
Query: 128 LPGPSSAPDLPGP--------------------------------SSAPDLPGPSSAPDL 155
PG PGP S P + G P
Sbjct: 246 PPGLQGIRGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGQGPPGSSGPPGIKGEKGFPGF 305
Query: 156 PGPSSAPDLPGPSS------APDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSA 206
PG D+PGP P L G S P LPG P +PG P S ++ G
Sbjct: 306 PGL----DMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQ 361
Query: 207 PDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDL------ 254
P PGP+ P LPG LPG P P G P +PG D+
Sbjct: 362 PGSPGPAGTPGLPGEKGDHGLPGSSGPRGDPGFKGDKGDVGLPGMPGSMEHVDMGSMKGQ 421
Query: 255 ---------------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
PG P G + P PGP P L G +P LPGP
Sbjct: 422 KGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLSGTPGSPGLPGP 481
Query: 294 SSTVLGSYL 302
+V G L
Sbjct: 482 KGSVGGMGL 490
>gi|201860274|ref|NP_001128481.1| collagen alpha-1(IV) chain precursor [Rattus norvegicus]
Length = 1669
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 115/325 (35%), Gaps = 50/325 (15%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 83
P L G S P LPG P +PG P S ++ G P PGP+ AP LPG
Sbjct: 851 PGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGAPGLPGEKGDHGF 910
Query: 84 PG---PSSAPDLPGPSS---APDLPGPSSAPDL--------------------------- 110
PG P P G P +PG D+
Sbjct: 911 PGSSGPRGDPGFKGDKGDVGLPGMPGSMEHVDMGSMKGQKGDQGEKGQIGPTGDKGSRGD 970
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
PG P G + P PGP P L G +P LPGP + P PG P +
Sbjct: 971 PGTPGVPGKDGQAGHPGQPGPKGDPGLSGIPGSPGLPGPKGSVGGMGLPGSPGEKGVPGI 1030
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PG P PG A G S P + P PG L G +P G +
Sbjct: 1031 PGSQGVPGSPGEKGAKGEKGQSGLPGI----GIPGRPGDKGDQGLAGFPGSPGEKGEKGS 1086
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
PG P PGP +P G +P LPG LPG P + G + P PGP
Sbjct: 1087 AGTPG---MPGSPGPRGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGTPGP 1143
Query: 285 SSAPDLPG-PSSTVLGSYLGEAGHQ 308
+ G P S + GE G Q
Sbjct: 1144 TGPAGQKGEPGSDGIPGSAGEKGEQ 1168
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 107/324 (33%), Gaps = 71/324 (21%)
Query: 28 DLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
D+PGP P L G S P LPG P +PG PG + G P
Sbjct: 837 DMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPG------FPGSKGEMGVMGTPGQP 890
Query: 82 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
PGP+ AP LPG PG P P G LPG +PG D+
Sbjct: 891 GSPGPAGAPGLPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPG------MPGSMEHVDM- 943
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS 195
S G GP+ G P +PG + P PGP P L G
Sbjct: 944 --GSMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLSGIP 1001
Query: 196 SAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---- 245
+P LPGP + P PG P +PG P PG A G S P +
Sbjct: 1002 GSPGLPGPKGSVGGMGLPGSPGEKGVPGIPGSQGVPGSPGEKGAKGEKGQSGLPGIGIPG 1061
Query: 246 ----------------------------------PGPSSAPDLPGPSSAPDLPGPSSAPD 271
PGP +P G +P LPG
Sbjct: 1062 RPGDKGDQGLAGFPGSPGEKGEKGSAGTPGMPGSPGPRGSPGNIGHPGSPGLPGEKGDKG 1121
Query: 272 LPGPSSAPDLPGPSSAPDLPGPSS 295
LPG P + G + P PGP+
Sbjct: 1122 LPGLDGVPGVKGEAGLPGTPGPTG 1145
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 103/328 (31%), Positives = 116/328 (35%), Gaps = 66/328 (20%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPGP A LPG +P PGP PG P PG A PG P LPGP
Sbjct: 644 LPGPPGAAGLPG---SPGFPGPQGDRGFPGTPGRPGNPGEKGAVGQPG-IGFPGLPGPKG 699
Query: 89 APDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
LPG +P PG + P PGP PG LPG P LPG P
Sbjct: 700 VDGLPGEIGRPGSPGRPGFNGLPGNPGPQGQKGEPGIG----LPGLKGQPGLPGIPGTPG 755
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP----------------------------- 176
G P +PG PG PGP
Sbjct: 756 EKGSIGGPGVPGEQGLTGPPGLQGIRGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGQGP 815
Query: 177 ---SSAPDLPGPSSAPDLPGPSSAPDLPGPS------SAPDLPGPSSAPDLPGPSSAPDL 227
S P + G P PG D+PGP P L G S P LPG P +
Sbjct: 816 PGSSGPPGVKGEKGFPGFPG----LDMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGV 871
Query: 228 PG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDL 281
PG P S ++ G P PGP+ AP LPG P GP P G L
Sbjct: 872 PGFPGSKGEMGVMGTPGQPGSPGPAGAPGLPGEKGDHGFPGSSGPRGDPGFKGDKGDVGL 931
Query: 282 PGPSSAPDLPGPSSTV-LGSYLGEAGHQ 308
PG +PG V +GS G+ G Q
Sbjct: 932 PG------MPGSMEHVDMGSMKGQKGDQ 953
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 114/337 (33%), Gaps = 65/337 (19%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 72
D LP + RP P PG + P PGP PG LPG P LPG P
Sbjct: 700 VDGLPGEIG-RPGSPGRPGFNGLPGNPGPQGQKGEPGIG----LPGLKGQPGLPGIPGTP 754
Query: 73 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---------------------------- 104
G P +PG PG PGP
Sbjct: 755 GEKGSIGGPGVPGEQGLTGPPGLQGIRGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGQG 814
Query: 105 ----SSAPDLPGPSSAPDLPGPSSAPDLPGPSS------APDLPGPSSAPDLPGPSSAPD 154
S P + G P PG D+PGP P L G S P LPG P
Sbjct: 815 PPGSSGPPGVKGEKGFPGFPGL----DMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPG 870
Query: 155 LPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPD 208
+PG P S ++ G P PGP+ AP LPG PG P P G
Sbjct: 871 VPGFPGSKGEMGVMGTPGQPGSPGPAGAPGLPGEKGDHGFPGSSGPRGDPGFKGDKGDVG 930
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-- 266
LPG +PG D+ S G GP+ G P +PG
Sbjct: 931 LPG------MPGSMEHVDM---GSMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDG 981
Query: 267 -SSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL 302
+ P PGP P L G +P LPGP +V G L
Sbjct: 982 QAGHPGQPGPKGDPGLSGIPGSPGLPGPKGSVGGMGL 1018
>gi|440898342|gb|ELR49862.1| Collagen alpha-1(IV) chain, partial [Bos grunniens mutus]
Length = 1642
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 106/298 (35%), Gaps = 32/298 (10%)
Query: 27 PDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P L G S P LPG P +PGP + G P PGP+ P LPG
Sbjct: 824 PGLTGQSGLPGLPGQQGTPGQPGIPGPKGEMGVMGTPGQPGSPGPAGVPGLPGAKGDHGF 883
Query: 84 PG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
PG P P G LPG + D S G GP+ G
Sbjct: 884 PGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGEKGDQGEKGQTGPTGDKGSRGD 943
Query: 141 SSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSS---------------APDL 182
P +PG + P PGP P + G AP LPGP +
Sbjct: 944 PGTPGVPGKDGQAGHPGQPGPKGDPGVSGVPGAPGLPGPKGPTGGMGLPGMPGPKGVAGI 1003
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
PGP P LPG A G + P + PG L G +P G + +P
Sbjct: 1004 PGPQGVPGLPGDKGAKGEKGQAGLPGIGIPGRPGDKGDQGLAGFPGSPGEKGEKGSTGIP 1063
Query: 238 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
G P PGP +P G +P LPG LPG P + G + P PGP+
Sbjct: 1064 G---MPGSPGPKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPGKPGPTG 1118
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 101/311 (32%), Gaps = 60/311 (19%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGP-------- 68
V P +P PGP+ P LPG PG P P G LPG
Sbjct: 856 VMGTPGQPGSPGPAGVPGLPGAKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVD 915
Query: 69 -SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSS 124
S G GP+ G P +PG + P PGP P + G
Sbjct: 916 MGSMKGEKGDQGEKGQTGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGVSGVPG 975
Query: 125 APDLPGPSS---------------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----- 164
AP LPGP +PGP P LPG A G + P +
Sbjct: 976 APGLPGPKGPTGGMGLPGMPGPKGVAGIPGPQGVPGLPGDKGAKGEKGQAGLPGIGIPGR 1035
Query: 165 ------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
PG G + P +PG PGP +P G +P LPG
Sbjct: 1036 PGDKGDQGLAGFPGSPGEKGEKGSTGIPGMPGS------PGPKGSPGSVGYPGSPGLPGE 1089
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
LPG P + G + P PGP+ GP+ PG P G L
Sbjct: 1090 KGDKGLPGLDGIPGIKGEAGLPGKPGPT------GPAGQKGEPGSDGIPGSVGEKGESGL 1143
Query: 273 PGPSSAPDLPG 283
PG P PG
Sbjct: 1144 PG-RGFPGFPG 1153
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 81/222 (36%), Gaps = 35/222 (15%)
Query: 20 VTERPLEPDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 64
V+ P P LPGP +PGP P LPG A G + P
Sbjct: 970 VSGVPGAPGLPGPKGPTGGMGLPGMPGPKGVAGIPGPQGVPGLPGDKGAKGEKGQAGLPG 1029
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
+ P PG L G +P G + +PG P PGP +P G
Sbjct: 1030 I----GIPGRPGDKGDQGLAGFPGSPGEKGEKGSTGIPG---MPGSPGPKGSPGSVGYPG 1082
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
+P LPG LPG P + G + P PGP+ GP+ PG P G
Sbjct: 1083 SPGLPGEKGDKGLPGLDGIPGIKGEAGLPGKPGPT------GPAGQKGEPGSDGIPGSVG 1136
Query: 185 PSSAPDLPGPSSAPDLPG----PSSAPDL--PGPSSAPDLPG 220
LPG P PG S D+ PG + +P +PG
Sbjct: 1137 EKGESGLPG-RGFPGFPGSKGDKGSKGDVGFPGLAGSPGIPG 1177
>gi|355757610|gb|EHH61135.1| Collagen alpha-6(IV) chain, partial [Macaca fascicularis]
Length = 1666
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 114/310 (36%), Gaps = 40/310 (12%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 636 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGNKGKPGSPGLVHLPELPGFPGPR 692
Query: 70 SAPDLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPG 121
LPG + P LPG +P LPG A D+ G + L G + L G
Sbjct: 693 GEKGLPGFTGLPGKDGLPGTIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGDKGLLG 752
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
S P L G P L GP G +P PGP P PG S + G S P
Sbjct: 753 DSGLPGLKGVYGKPGLLGPK------GERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLP- 805
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 806 -----GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGNPG------LIGLKG 854
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSY 301
+P PG + P L GP G P +PG P +PG +PG +
Sbjct: 855 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGK----- 906
Query: 302 LGEAGHQKSP 311
+G +GH +P
Sbjct: 907 MGPSGHAGTP 916
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 105/285 (36%), Gaps = 35/285 (12%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 84
LPG LPG P G P P GPS P PG PGP + LP
Sbjct: 606 GLPGDKGKDGLPGQQGPPGSKGITLPCIIPGSYGPSGFPGTPG------FPGPKGSRGLP 659
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPS 141
G P G P PG P+LPG PGP LPG + P LPG
Sbjct: 660 GTPGQPGSSGNKGKPGSPGLVHLPELPG------FPGPRGEKGLPGFTGLPGKDGLPGTI 713
Query: 142 SAPDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 195
+P LPG A D+ G + L G + L G S P L G P L GP
Sbjct: 714 GSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGDKGLLGDSGLPGLKGVYGKPGLLGPKG 773
Query: 196 --SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
+P PGP P PG S + G S AP PG S P G PG
Sbjct: 774 ERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIV 833
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
LPG P PG L G +P PG + P L GP
Sbjct: 834 KKGLPGLKGLPGNPG------LIGLKGSPGSPGVAGLPALSGPKG 872
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 95/259 (36%), Gaps = 26/259 (10%)
Query: 27 PDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPS 78
P PGP LPG + P LPG +P LPG A D+ G + L G +
Sbjct: 686 PGFPGPRGEKGLPGFTGLPGKDGLPGTIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLT 745
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPS--- 132
L G S P L G P L GP +P PGP P PG S + G S
Sbjct: 746 GDKGLLGDSGLPGLKGVYGKPGLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLP 805
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
AP PG S P G PG LPG P PG L G +P P
Sbjct: 806 GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGNPG------LIGLKGSPGSP 859
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
G + P L GP G P +PG P +PG +PG + GPS
Sbjct: 860 GVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGK---MGPSGHA 913
Query: 253 DLPGPSSAPDLPGPSSAPD 271
PG PGP P
Sbjct: 914 GTPGEKGDRGNPGPVGIPG 932
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 89/247 (36%), Gaps = 18/247 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
V+ +P P G P L G S P +PG S + + G S LPG S P L G
Sbjct: 988 VSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSSG---LPGTSGLPGLKG 1044
Query: 77 PSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
+ PGP P G GP PG G S L G
Sbjct: 1045 DNGQTLEISGSPGPKGQPGESGFKGTKGRDGPIGNIGFPGNKGEDGKVGVSGDVGLHGAP 1104
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
P + G P LPG S GP P L GP P PG LPG P
Sbjct: 1105 GFPGVAGMRGEPGLPGSSGHQGAIGPLGPPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTP 1164
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
GPS +PGP+ LPGP PG AP PG G P L GP+
Sbjct: 1165 GPSIT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAGL 1217
Query: 252 PDLPGPS 258
P PG S
Sbjct: 1218 PGAPGIS 1224
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 68/193 (35%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG LPG + + G P +PG S + + G S LPG S
Sbjct: 985 IKGVSGKPGPPGFMGIRGLPGLKGSSGITG---FPGMPGESGSQGIRGSSG---LPGTSG 1038
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P L G + PGP P G GP PG G S
Sbjct: 1039 LPGLKGDNGQTLEISGSPGPKGQPGESGFKGTKGRDGPIGNIGFPGNKGEDGKVGVSGDV 1098
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
L G P + G P LPG S GP P L GP P PG LPG
Sbjct: 1099 GLHGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGPPGLIGPKGFPGFPGLHGLNGLPGTK 1158
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1159 GTHGTPGPSITGV 1171
>gi|402911081|ref|XP_003918171.1| PREDICTED: collagen alpha-6(IV) chain isoform 2 [Papio anubis]
Length = 1688
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 115/310 (37%), Gaps = 40/310 (12%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 658 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGNKGKPGSPGLVHLPELPGFPGPR 714
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 715 GEKGLPG---FPGLPGKDG---LPGTIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 768
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
L G S P L G P L GP +P PGP P PG S + G S P
Sbjct: 769 DKGLLGDSGLPGLKGVYGKPGLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLP- 827
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 828 -----GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGNPG------LIGLKG 876
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSY 301
+P PG + P L GP G P +PG P +PG +PG +
Sbjct: 877 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGK----- 928
Query: 302 LGEAGHQKSP 311
+G +GH +P
Sbjct: 929 MGPSGHAGTP 938
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 105/285 (36%), Gaps = 35/285 (12%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAP 81
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 628 GLPGDKGKDGLPGQQGPPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQP 687
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 688 GSSGNKGKPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGTI 735
Query: 142 SAPDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 195
+P LPG A D+ G + L G + L G S P L G P L GP
Sbjct: 736 GSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGDKGLLGDSGLPGLKGVYGKPGLLGPKG 795
Query: 196 --SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
+P PGP P PG S + G S AP PG S P G PG
Sbjct: 796 ERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIV 855
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
LPG P PG L G +P PG + P L GP
Sbjct: 856 KKGLPGLKGLPGNPG------LIGLKGSPGSPGVAGLPALSGPKG 894
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 111/300 (37%), Gaps = 36/300 (12%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPS 78
+ P P PGP LPG P LPG LPG +P LPG A D+ G
Sbjct: 701 LVHLPELPGFPGPRGEKGLPG---FPGLPGKDG---LPGTIGSPGLPGSKGATGDIFGAE 754
Query: 79 SA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGP 131
+ L G + L G S P L G P L GP +P PGP P PG
Sbjct: 755 NGAPGEQGLQGLTGDKGLLGDSGLPGLKGVYGKPGLLGPKGERGSPGTPGPVGQPGTPGS 814
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
S + G S P AP PG S P G PG LPG P
Sbjct: 815 SGPYGIKGKSGLP------GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGN 868
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
PG L G +P PG + P L GP G P +PG P +PG
Sbjct: 869 PG------LIGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGL 919
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL-GEAGHQKS 310
+PG + GPS PG PGP +PGP + +L G+ G Q S
Sbjct: 920 KGIPGSTGK---MGPSGHAGTPGEKGDRGNPGPVG---IPGPRRPMSNLWLKGDKGSQGS 973
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 89/247 (36%), Gaps = 18/247 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
V+ +P P G P L G S P +PG S + + G S LPG S P L G
Sbjct: 1010 VSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSSG---LPGTSGLPGLKG 1066
Query: 77 PSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
+ PGP P G GP PG G S L G
Sbjct: 1067 DNGQTLEISGSPGPKGQPGESGFKGTKGRDGPIGNIGFPGNKGEDGKVGVSGDVGLHGAP 1126
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
P + G P LPG S GP P L GP P PG LPG P
Sbjct: 1127 GFPGVAGMRGEPGLPGSSGHQGAIGPLGPPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTP 1186
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
GPS +PGP+ LPGP PG AP PG G P L GP+
Sbjct: 1187 GPSIT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAGL 1239
Query: 252 PDLPGPS 258
P PG S
Sbjct: 1240 PGAPGIS 1246
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 68/193 (35%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG LPG + + G P +PG S + + G S LPG S
Sbjct: 1007 IKGVSGKPGPPGFMGIRGLPGLKGSSGITG---FPGMPGESGSQGIRGSSG---LPGTSG 1060
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P L G + PGP P G GP PG G S
Sbjct: 1061 LPGLKGDNGQTLEISGSPGPKGQPGESGFKGTKGRDGPIGNIGFPGNKGEDGKVGVSGDV 1120
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
L G P + G P LPG S GP P L GP P PG LPG
Sbjct: 1121 GLHGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGPPGLIGPKGFPGFPGLHGLNGLPGTK 1180
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1181 GTHGTPGPSITGV 1193
>gi|296481578|tpg|DAA23693.1| TPA: collagen alpha-1(IV) chain [Bos taurus]
Length = 1669
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 107/298 (35%), Gaps = 32/298 (10%)
Query: 27 PDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P L G S P LPG P +PGP + G P PGP+ P LPG
Sbjct: 851 PGLTGQSGLPGLPGQQGTPGQPGIPGPKGEMGVMGTPGQPGSPGPAGVPGLPGAKGDHGF 910
Query: 84 PG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
PG P P G LPG + D S G GP+ G
Sbjct: 911 PGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGEKGDQGEKGQTGPTGDKGSRGD 970
Query: 141 SSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---------------DL 182
P +PG + P PGP P + G AP LPGP + +
Sbjct: 971 PGTPGVPGKDGQAGHPGQPGPKGDPGVSGIPGAPGLPGPKGSAGGMGLPGMPGPKGVAGI 1030
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
PGP P LPG A G + P + PG L G +P G + +P
Sbjct: 1031 PGPQGIPGLPGDKGAKGEKGQAGLPGIGIPGRPGDKGDQGLAGFPGSPGEKGEKGSTGIP 1090
Query: 238 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
G P PGP +P G +P LPG LPG P + G + P PGP+
Sbjct: 1091 G---MPGSPGPKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPGKPGPTG 1145
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 102/284 (35%), Gaps = 28/284 (9%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSA 80
P +P +PGP + G P PGP+ P LPG PG P P G
Sbjct: 869 PGQPGIPGPKGEMGVMGTPGQPGSPGPAGVPGLPGAKGDHGFPGSSGPRGDPGFKGDKGD 928
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDL 137
LPG + D S G GP+ G P +PG + P
Sbjct: 929 VGLPGKPGSMDKVDMGSMKGEKGDQGEKGQTGPTGDKGSRGDPGTPGVPGKDGQAGHPGQ 988
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAP---------------DLPGPSSAPDLPGPSSAPDL 182
PGP P + G AP LPGP + +PGP P LPG A
Sbjct: 989 PGPKGDPGVSGIPGAPGLPGPKGSAGGMGLPGMPGPKGVAGIPGPQGIPGLPGDKGAKGE 1048
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
G + P + P PG L G +P G + +PG P PGP +
Sbjct: 1049 KGQAGLPGI----GIPGRPGDKGDQGLAGFPGSPGEKGEKGSTGIPG---MPGSPGPKGS 1101
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
P G +P LPG LPG P + G + P PGP+
Sbjct: 1102 PGSVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPGKPGPTG 1145
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 111/329 (33%), Gaps = 63/329 (19%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGP-------- 68
V P +P PGP+ P LPG PG P P G LPG
Sbjct: 883 VMGTPGQPGSPGPAGVPGLPGAKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVD 942
Query: 69 -SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSS 124
S G GP+ G P +PG + P PGP P + G
Sbjct: 943 MGSMKGEKGDQGEKGQTGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGVSGIPG 1002
Query: 125 APDLPGPSSAP---------------DLPGPSSAPDLPGPSSAPDLPGPSSAPDL----- 164
AP LPGP + +PGP P LPG A G + P +
Sbjct: 1003 APGLPGPKGSAGGMGLPGMPGPKGVAGIPGPQGIPGLPGDKGAKGEKGQAGLPGIGIPGR 1062
Query: 165 ------------PGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDL 209
PG G + P + PGP +P G +P LPG L
Sbjct: 1063 PGDKGDQGLAGFPGSPGEKGEKGSTGIPGMPGSPGPKGSPGSVGYPGSPGLPGEKGDKGL 1122
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
PG P + G + P PGP+ GP+ PG P G LPG
Sbjct: 1123 PGLDGIPGIKGEAGLPGKPGPT------GPAGQKGEPGSDGIPGSVGEKGESGLPG-RGF 1175
Query: 270 PDLPG----PSSAPDL--PGPSSAPDLPG 292
P PG S D+ PG S +P +PG
Sbjct: 1176 PGFPGSKGDKGSKGDVGFPGLSGSPGIPG 1204
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 97/298 (32%), Gaps = 51/298 (17%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 87
LPG P +PG P G P +PG A PG PGP P GP
Sbjct: 738 LPGLKGLPGIPGIPGTPGEKGNVGGPGIPGEHGAIGPPGLQGLRGDPGP---PGFQGPKG 794
Query: 88 -------------------------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 122
P + G P PG D+PGP G
Sbjct: 795 APGVPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPG----LDMPGPKGD---KGS 847
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
P L G S P LPG P PG +PGP + G P PGP+ P L
Sbjct: 848 QGLPGLTGQSGLPGLPGQQGTPGQPG------IPGPKGEMGVMGTPGQPGSPGPAGVPGL 901
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
PG PG S GP P G LPG + D S G
Sbjct: 902 PGAKGDHGFPGSS------GPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGEKGDQGE 955
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
GP+ G P +PG + P PGP P + G AP LPGP +
Sbjct: 956 KGQTGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGVSGIPGAPGLPGPKGSA 1013
>gi|262073079|ref|NP_001159983.1| collagen alpha-1(IV) chain precursor [Bos taurus]
Length = 1669
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 107/298 (35%), Gaps = 32/298 (10%)
Query: 27 PDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P L G S P LPG P +PGP + G P PGP+ P LPG
Sbjct: 851 PGLTGQSGLPGLPGQQGTPGQPGIPGPKGEMGVMGTPGQPGSPGPAGVPGLPGAKGDHGF 910
Query: 84 PG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
PG P P G LPG + D S G GP+ G
Sbjct: 911 PGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGEKGDQGEKGQTGPTGDKGSRGD 970
Query: 141 SSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---------------DL 182
P +PG + P PGP P + G AP LPGP + +
Sbjct: 971 PGTPGVPGKDGQAGHPGQPGPKGDPGVSGIPGAPGLPGPKGSAGGMGLPGMPGPKGVAGI 1030
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
PGP P LPG A G + P + PG L G +P G + +P
Sbjct: 1031 PGPQGIPGLPGDKGAKGEKGQAGLPGIGIPGRPGDKGDQGLAGFPGSPGEKGEKGSTGIP 1090
Query: 238 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
G P PGP +P G +P LPG LPG P + G + P PGP+
Sbjct: 1091 G---MPGSPGPKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPGKPGPTG 1145
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 102/284 (35%), Gaps = 28/284 (9%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSA 80
P +P +PGP + G P PGP+ P LPG PG P P G
Sbjct: 869 PGQPGIPGPKGEMGVMGTPGQPGSPGPAGVPGLPGAKGDHGFPGSSGPRGDPGFKGDKGD 928
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDL 137
LPG + D S G GP+ G P +PG + P
Sbjct: 929 VGLPGKPGSMDKVDMGSMKGEKGDQGEKGQTGPTGDKGSRGDPGTPGVPGKDGQAGHPGQ 988
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAP---------------DLPGPSSAPDLPGPSSAPDL 182
PGP P + G AP LPGP + +PGP P LPG A
Sbjct: 989 PGPKGDPGVSGIPGAPGLPGPKGSAGGMGLPGMPGPKGVAGIPGPQGIPGLPGDKGAKGE 1048
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
G + P + P PG L G +P G + +PG P PGP +
Sbjct: 1049 KGQAGLPGI----GIPGRPGDKGDQGLAGFPGSPGEKGEKGSTGIPG---MPGSPGPKGS 1101
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
P G +P LPG LPG P + G + P PGP+
Sbjct: 1102 PGSVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPGKPGPTG 1145
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 111/329 (33%), Gaps = 63/329 (19%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGP-------- 68
V P +P PGP+ P LPG PG P P G LPG
Sbjct: 883 VMGTPGQPGSPGPAGVPGLPGAKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVD 942
Query: 69 -SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSS 124
S G GP+ G P +PG + P PGP P + G
Sbjct: 943 MGSMKGEKGDQGEKGQTGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGVSGIPG 1002
Query: 125 APDLPGPSSAP---------------DLPGPSSAPDLPGPSSAPDLPGPSSAPDL----- 164
AP LPGP + +PGP P LPG A G + P +
Sbjct: 1003 APGLPGPKGSAGGMGLPGMPGPKGVAGIPGPQGIPGLPGDKGAKGEKGQAGLPGIGIPGR 1062
Query: 165 ------------PGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDL 209
PG G + P + PGP +P G +P LPG L
Sbjct: 1063 PGDKGDQGLAGFPGSPGEKGEKGSTGIPGMPGSPGPKGSPGSVGYPGSPGLPGEKGDKGL 1122
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
PG P + G + P PGP+ GP+ PG P G LPG
Sbjct: 1123 PGLDGIPGIKGEAGLPGKPGPT------GPAGQKGEPGSDGIPGSVGEKGESGLPG-RGF 1175
Query: 270 PDLPG----PSSAPDL--PGPSSAPDLPG 292
P PG S D+ PG S +P +PG
Sbjct: 1176 PGFPGSKGDKGSKGDVGFPGLSGSPGIPG 1204
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 97/298 (32%), Gaps = 51/298 (17%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 87
LPG P +PG P G P +PG A PG PGP P GP
Sbjct: 738 LPGLKGLPGIPGIPGTPGEKGNVGGPGIPGEHGAIGPPGLQGLRGDPGP---PGFQGPKG 794
Query: 88 -------------------------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 122
P + G P PG D+PGP G
Sbjct: 795 APGVPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPG----LDMPGPKGD---KGS 847
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
P L G S P LPG P PG +PGP + G P PGP+ P L
Sbjct: 848 QGLPGLTGQSGLPGLPGQQGTPGQPG------IPGPKGEMGVMGTPGQPGSPGPAGVPGL 901
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
PG PG S GP P G LPG + D S G
Sbjct: 902 PGAKGDHGFPGSS------GPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGEKGDQGE 955
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
GP+ G P +PG + P PGP P + G AP LPGP +
Sbjct: 956 KGQTGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGVSGIPGAPGLPGPKGSA 1013
>gi|296478893|tpg|DAA21008.1| TPA: proteoglycan 4 [Bos taurus]
Length = 1445
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 114/223 (51%), Gaps = 17/223 (7%)
Query: 62 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 121
+P P P+S P P P+S P P P++ P P P+ P P P+ P P P+S+ + P
Sbjct: 691 SPKEPAPTS-PKEPAPTS-PKEPAPTTTPKEPAPTD-PKEPAPAE-PKEPAPTSSKE-PA 745
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
P++ P P++ P P P+ P P P+ P P P+S P P P++ P P+ P
Sbjct: 746 PTTTTKEPAPTTTPKEPAPTD-PKEPAPAE-PKEPAPTS-PKEPAPTTTTKEPAPAE-PK 801
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
P P+S P P P++ P P+ P P P+S P P P++ P P++ P P P+
Sbjct: 802 EPAPTS-PKEPAPTTTTKEPAPAE-PKEPAPTS-PKEPAPTTTTKEPAPTTTPKEPAPTD 858
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
P P P+ P P P+ P P P+S P+ PSS PD+P P
Sbjct: 859 -PKEPAPAE-PKEPAPAE-PKEPTPNS-PETLAPSS-PDIPAP 896
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 91/179 (50%), Gaps = 12/179 (6%)
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
+P P P+S P P P+S P P P++ P P P+ P P P+ P P P+S+ + P
Sbjct: 691 SPKEPAPTS-PKEPAPTS-PKEPAPTTTPKEPAPTD-PKEPAPAE-PKEPAPTSSKE-PA 745
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 226
P++ P P++ P P P+ P P P+ P P P+S P P P++ P P+ P
Sbjct: 746 PTTTTKEPAPTTTPKEPAPTD-PKEPAPAE-PKEPAPTS-PKEPAPTTTTKEPAPAE-PK 801
Query: 227 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
P P+S P P P++ P P+ P P P+S P P P++ P P++ P P P+
Sbjct: 802 EPAPTS-PKEPAPTTTTKEPAPAE-PKEPAPTS-PKEPAPTTTTKEPAPTTTPKEPAPT 857
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 92/180 (51%), Gaps = 13/180 (7%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P EP P P+S+ + P P++ P P++ P P P+ P P P+ P P P+S P
Sbjct: 730 PAEPKEPAPTSSKE-PAPTTTTKEPAPTTTPKEPAPTD-PKEPAPAE-PKEPAPTS-PKE 785
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
P P++ P P+ P P P+S P P P++ P P+ P P P+S P P P++
Sbjct: 786 PAPTTTTKEPAPAE-PKEPAPTS-PKEPAPTTTTKEPAPAE-PKEPAPTS-PKEPAPTTT 841
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
P P++ P P P+ P P P+ P P P+ P P P+S P+ PSS PD+P P
Sbjct: 842 TKEPAPTTTPKEPAPTD-PKEPAPAE-PKEPAPAE-PKEPTPNS-PETLAPSS-PDIPAP 896
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 17/162 (10%)
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+P P P+S P P P+S P P P++ P P P+ P P P+ P P P+S+ + P
Sbjct: 691 SPKEPAPTS-PKEPAPTS-PKEPAPTTTPKEPAPTD-PKEPAPAE-PKEPAPTSSKE-PA 745
Query: 203 PSSAPDLPGPSSAPDLPGPS-------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
P++ P P++ P P P+ + P P P+S P P P++ P P+ P P
Sbjct: 746 PTTTTKEPAPTTTPKEPAPTDPKEPAPAEPKEPAPTS-PKEPAPTTTTKEPAPAE-PKEP 803
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
P+S P P P++ P P+ P P P+S P P P++T
Sbjct: 804 APTS-PKEPAPTTTTKEPAPAE-PKEPAPTS-PKEPAPTTTT 842
>gi|109131880|ref|XP_001098348.1| PREDICTED: collagen alpha-6(IV) chain isoform 2 [Macaca mulatta]
Length = 1688
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 115/310 (37%), Gaps = 40/310 (12%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 658 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGNKGKPGSPGLVHLPELPGFPGPR 714
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 715 GEKGLPG---FPGLPGKDG---LPGTIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 768
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
L G S P L G P L GP +P PGP P PG S + G S P
Sbjct: 769 DKGLLGDSGLPGLKGVYGKPGLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLP- 827
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 828 -----GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGNPG------LIGLKG 876
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSY 301
+P PG + P L GP G P +PG P +PG +PG +
Sbjct: 877 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGK----- 928
Query: 302 LGEAGHQKSP 311
+G +GH +P
Sbjct: 929 MGPSGHAGTP 938
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 105/285 (36%), Gaps = 35/285 (12%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAP 81
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 628 GLPGDKGKDGLPGQQGPPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQP 687
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 688 GSSGNKGKPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGTI 735
Query: 142 SAPDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 195
+P LPG A D+ G + L G + L G S P L G P L GP
Sbjct: 736 GSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGDKGLLGDSGLPGLKGVYGKPGLLGPKG 795
Query: 196 --SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
+P PGP P PG S + G S AP PG S P G PG
Sbjct: 796 ERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIV 855
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
LPG P PG L G +P PG + P L GP
Sbjct: 856 KKGLPGLKGLPGNPG------LIGLKGSPGSPGVAGLPALSGPKG 894
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 89/247 (36%), Gaps = 18/247 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
V+ +P P G P L G S P +PG S + + G S LPG S P L G
Sbjct: 1010 VSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSSG---LPGTSGLPGLKG 1066
Query: 77 PSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
+ PGP P G GP PG G S L G
Sbjct: 1067 DNGQTLEISGSPGPKGQPGESGFKGTKGRDGPIGNIGFPGNKGEDGKVGVSGDVGLHGAP 1126
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
P + G P LPG S GP P L GP P PG LPG P
Sbjct: 1127 GFPGVAGMRGEPGLPGSSGHQGAIGPLGPPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTP 1186
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
GPS +PGP+ LPGP PG AP PG G P L GP+
Sbjct: 1187 GPSIT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAGL 1239
Query: 252 PDLPGPS 258
P PG S
Sbjct: 1240 PGAPGIS 1246
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 109/293 (37%), Gaps = 36/293 (12%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----P 81
P PGP LPG P LPG LPG +P LPG A D+ G +
Sbjct: 708 PGFPGPRGEKGLPG---FPGLPGKDG---LPGTIGSPGLPGSKGATGDIFGAENGAPGEQ 761
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLP 138
L G + L G S P L G P L GP +P PGP P PG S +
Sbjct: 762 GLQGLTGDKGLLGDSGLPGLKGVYGKPGLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIK 821
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G S P AP PG S P G PG LPG P PG
Sbjct: 822 GKSGLP------GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGNPG----- 870
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
L G +P PG + P L GP G P +PG P +PG +PG +
Sbjct: 871 -LIGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGST 926
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL-GEAGHQKS 310
GPS PG PGP +PGP + +L G+ G Q S
Sbjct: 927 GK---MGPSGHAGTPGEKGDRGNPGPVG---IPGPRRPMSNLWLKGDKGSQGS 973
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 68/193 (35%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG LPG + + G P +PG S + + G S LPG S
Sbjct: 1007 IKGVSGKPGPPGFMGIRGLPGLKGSSGITG---FPGMPGESGSQGIRGSSG---LPGTSG 1060
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P L G + PGP P G GP PG G S
Sbjct: 1061 LPGLKGDNGQTLEISGSPGPKGQPGESGFKGTKGRDGPIGNIGFPGNKGEDGKVGVSGDV 1120
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
L G P + G P LPG S GP P L GP P PG LPG
Sbjct: 1121 GLHGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGPPGLIGPKGFPGFPGLHGLNGLPGTK 1180
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1181 GTHGTPGPSITGV 1193
>gi|109131878|ref|XP_001098247.1| PREDICTED: collagen alpha-6(IV) chain isoform 1 [Macaca mulatta]
Length = 1675
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 115/310 (37%), Gaps = 40/310 (12%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 657 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGNKGKPGSPGLVHLPELPGFPGPR 713
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 714 GEKGLPG---FPGLPGKDG---LPGTIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 767
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
L G S P L G P L GP +P PGP P PG S + G S P
Sbjct: 768 DKGLLGDSGLPGLKGVYGKPGLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLP- 826
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 827 -----GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGNPG------LIGLKG 875
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSY 301
+P PG + P L GP G P +PG P +PG +PG +
Sbjct: 876 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGK----- 927
Query: 302 LGEAGHQKSP 311
+G +GH +P
Sbjct: 928 MGPSGHAGTP 937
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 105/285 (36%), Gaps = 35/285 (12%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAP 81
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 627 GLPGDKGKDGLPGQQGPPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQP 686
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 687 GSSGNKGKPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGTI 734
Query: 142 SAPDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 195
+P LPG A D+ G + L G + L G S P L G P L GP
Sbjct: 735 GSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGDKGLLGDSGLPGLKGVYGKPGLLGPKG 794
Query: 196 --SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
+P PGP P PG S + G S AP PG S P G PG
Sbjct: 795 ERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIV 854
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
LPG P PG L G +P PG + P L GP
Sbjct: 855 KKGLPGLKGLPGNPG------LIGLKGSPGSPGVAGLPALSGPKG 893
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 89/247 (36%), Gaps = 18/247 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
V+ +P P G P L G S P +PG S + + G S LPG S P L G
Sbjct: 1009 VSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSSG---LPGTSGLPGLKG 1065
Query: 77 PSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
+ PGP P G GP PG G S L G
Sbjct: 1066 DNGQTLEISGSPGPKGQPGESGFKGTKGRDGPIGNIGFPGNKGEDGKVGVSGDVGLHGAP 1125
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
P + G P LPG S GP P L GP P PG LPG P
Sbjct: 1126 GFPGVAGMRGEPGLPGSSGHQGAIGPLGPPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTP 1185
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
GPS +PGP+ LPGP PG AP PG G P L GP+
Sbjct: 1186 GPSIT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAGL 1238
Query: 252 PDLPGPS 258
P PG S
Sbjct: 1239 PGAPGIS 1245
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 109/293 (37%), Gaps = 36/293 (12%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----P 81
P PGP LPG P LPG LPG +P LPG A D+ G +
Sbjct: 707 PGFPGPRGEKGLPG---FPGLPGKDG---LPGTIGSPGLPGSKGATGDIFGAENGAPGEQ 760
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLP 138
L G + L G S P L G P L GP +P PGP P PG S +
Sbjct: 761 GLQGLTGDKGLLGDSGLPGLKGVYGKPGLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIK 820
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G S P AP PG S P G PG LPG P PG
Sbjct: 821 GKSGLP------GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGNPG----- 869
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
L G +P PG + P L GP G P +PG P +PG +PG +
Sbjct: 870 -LIGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGST 925
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL-GEAGHQKS 310
GPS PG PGP +PGP + +L G+ G Q S
Sbjct: 926 GK---MGPSGHAGTPGEKGDRGNPGPVG---IPGPRRPMSNLWLKGDKGSQGS 972
>gi|355705061|gb|EHH30986.1| Collagen alpha-6(IV) chain, partial [Macaca mulatta]
Length = 1684
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 115/310 (37%), Gaps = 40/310 (12%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 654 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSNGNKGKPGSPGLVHLPELPGFPGPR 710
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 711 GEKGLPG---FPGLPGKDG---LPGTIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 764
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
L G S P L G P L GP +P PGP P PG S + G S P
Sbjct: 765 DKGLLGDSGLPGLKGVYGKPGLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLP- 823
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 824 -----GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGNPG------LIGLKG 872
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSY 301
+P PG + P L GP G P +PG P +PG +PG +
Sbjct: 873 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGK----- 924
Query: 302 LGEAGHQKSP 311
+G +GH +P
Sbjct: 925 MGPSGHAGTP 934
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 105/285 (36%), Gaps = 35/285 (12%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAP 81
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 624 GLPGDKGKDGLPGQQGPPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQP 683
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 684 GSNGNKGKPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGTI 731
Query: 142 SAPDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 195
+P LPG A D+ G + L G + L G S P L G P L GP
Sbjct: 732 GSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGDKGLLGDSGLPGLKGVYGKPGLLGPKG 791
Query: 196 --SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
+P PGP P PG S + G S AP PG S P G PG
Sbjct: 792 ERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIV 851
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
LPG P PG L G +P PG + P L GP
Sbjct: 852 KKGLPGLKGLPGNPG------LIGLKGSPGSPGVAGLPALSGPKG 890
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 89/247 (36%), Gaps = 18/247 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
V+ +P P G P L G S P +PG S + + G S LPG S P L G
Sbjct: 1006 VSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSSG---LPGTSGLPGLKG 1062
Query: 77 PSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
+ PGP P G GP PG G S L G
Sbjct: 1063 DNGQTLEISGSPGPKGQPGESGFKGTKGRDGPIGNIGFPGNKGEDGKVGVSGDVGLHGAP 1122
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
P + G P LPG S GP P L GP P PG LPG P
Sbjct: 1123 GFPGVAGMRGEPGLPGSSGHQGAIGPLGPPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTP 1182
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
GPS +PGP+ LPGP PG AP PG G P L GP+
Sbjct: 1183 GPSIT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAGL 1235
Query: 252 PDLPGPS 258
P PG S
Sbjct: 1236 PGAPGIS 1242
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 109/293 (37%), Gaps = 36/293 (12%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----P 81
P PGP LPG P LPG LPG +P LPG A D+ G +
Sbjct: 704 PGFPGPRGEKGLPG---FPGLPGKDG---LPGTIGSPGLPGSKGATGDIFGAENGAPGEQ 757
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLP 138
L G + L G S P L G P L GP +P PGP P PG S +
Sbjct: 758 GLQGLTGDKGLLGDSGLPGLKGVYGKPGLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIK 817
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G S P AP PG S P G PG LPG P PG
Sbjct: 818 GKSGLP------GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGNPG----- 866
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
L G +P PG + P L GP G P +PG P +PG +PG +
Sbjct: 867 -LIGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGST 922
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL-GEAGHQKS 310
GPS PG PGP +PGP + +L G+ G Q S
Sbjct: 923 GK---MGPSGHAGTPGEKGDRGNPGPVG---IPGPRRPMSNLWLKGDKGSQGS 969
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 68/193 (35%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG LPG + + G P +PG S + + G S LPG S
Sbjct: 1003 IKGVSGKPGPPGFMGIRGLPGLKGSSGITG---FPGMPGESGSQGIRGSSG---LPGTSG 1056
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P L G + PGP P G GP PG G S
Sbjct: 1057 LPGLKGDNGQTLEISGSPGPKGQPGESGFKGTKGRDGPIGNIGFPGNKGEDGKVGVSGDV 1116
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
L G P + G P LPG S GP P L GP P PG LPG
Sbjct: 1117 GLHGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGPPGLIGPKGFPGFPGLHGLNGLPGTK 1176
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1177 GTHGTPGPSITGV 1189
>gi|402911079|ref|XP_003918170.1| PREDICTED: collagen alpha-6(IV) chain isoform 1 [Papio anubis]
Length = 1687
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 115/310 (37%), Gaps = 40/310 (12%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 657 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGNKGKPGSPGLVHLPELPGFPGPR 713
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 714 GEKGLPG---FPGLPGKDG---LPGTIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 767
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
L G S P L G P L GP +P PGP P PG S + G S P
Sbjct: 768 DKGLLGDSGLPGLKGVYGKPGLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLP- 826
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 827 -----GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGNPG------LIGLKG 875
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSY 301
+P PG + P L GP G P +PG P +PG +PG +
Sbjct: 876 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGK----- 927
Query: 302 LGEAGHQKSP 311
+G +GH +P
Sbjct: 928 MGPSGHAGTP 937
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 105/285 (36%), Gaps = 35/285 (12%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAP 81
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 627 GLPGDKGKDGLPGQQGPPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQP 686
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 687 GSSGNKGKPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGTI 734
Query: 142 SAPDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 195
+P LPG A D+ G + L G + L G S P L G P L GP
Sbjct: 735 GSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGDKGLLGDSGLPGLKGVYGKPGLLGPKG 794
Query: 196 --SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
+P PGP P PG S + G S AP PG S P G PG
Sbjct: 795 ERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIV 854
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
LPG P PG L G +P PG + P L GP
Sbjct: 855 KKGLPGLKGLPGNPG------LIGLKGSPGSPGVAGLPALSGPKG 893
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 89/247 (36%), Gaps = 18/247 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
V+ +P P G P L G S P +PG S + + G S LPG S P L G
Sbjct: 1009 VSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSSG---LPGTSGLPGLKG 1065
Query: 77 PSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
+ PGP P G GP PG G S L G
Sbjct: 1066 DNGQTLEISGSPGPKGQPGESGFKGTKGRDGPIGNIGFPGNKGEDGKVGVSGDVGLHGAP 1125
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
P + G P LPG S GP P L GP P PG LPG P
Sbjct: 1126 GFPGVAGMRGEPGLPGSSGHQGAIGPLGPPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTP 1185
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
GPS +PGP+ LPGP PG AP PG G P L GP+
Sbjct: 1186 GPSIT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAGL 1238
Query: 252 PDLPGPS 258
P PG S
Sbjct: 1239 PGAPGIS 1245
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 111/300 (37%), Gaps = 36/300 (12%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPS 78
+ P P PGP LPG P LPG LPG +P LPG A D+ G
Sbjct: 700 LVHLPELPGFPGPRGEKGLPG---FPGLPGKDG---LPGTIGSPGLPGSKGATGDIFGAE 753
Query: 79 SA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGP 131
+ L G + L G S P L G P L GP +P PGP P PG
Sbjct: 754 NGAPGEQGLQGLTGDKGLLGDSGLPGLKGVYGKPGLLGPKGERGSPGTPGPVGQPGTPGS 813
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
S + G S P AP PG S P G PG LPG P
Sbjct: 814 SGPYGIKGKSGLP------GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGN 867
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
PG L G +P PG + P L GP G P +PG P +PG
Sbjct: 868 PG------LIGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGL 918
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL-GEAGHQKS 310
+PG + GPS PG PGP +PGP + +L G+ G Q S
Sbjct: 919 KGIPGSTGK---MGPSGHAGTPGEKGDRGNPGPVG---IPGPRRPMSNLWLKGDKGSQGS 972
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 68/193 (35%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG LPG + + G P +PG S + + G S LPG S
Sbjct: 1006 IKGVSGKPGPPGFMGIRGLPGLKGSSGITG---FPGMPGESGSQGIRGSSG---LPGTSG 1059
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P L G + PGP P G GP PG G S
Sbjct: 1060 LPGLKGDNGQTLEISGSPGPKGQPGESGFKGTKGRDGPIGNIGFPGNKGEDGKVGVSGDV 1119
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
L G P + G P LPG S GP P L GP P PG LPG
Sbjct: 1120 GLHGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGPPGLIGPKGFPGFPGLHGLNGLPGTK 1179
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1180 GTHGTPGPSITGV 1192
>gi|109131876|ref|XP_001098448.1| PREDICTED: collagen alpha-6(IV) chain isoform 3 [Macaca mulatta]
Length = 1687
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 115/310 (37%), Gaps = 40/310 (12%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 657 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGNKGKPGSPGLVHLPELPGFPGPR 713
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 714 GEKGLPG---FPGLPGKDG---LPGTIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 767
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
L G S P L G P L GP +P PGP P PG S + G S P
Sbjct: 768 DKGLLGDSGLPGLKGVYGKPGLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLP- 826
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 827 -----GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGNPG------LIGLKG 875
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSY 301
+P PG + P L GP G P +PG P +PG +PG +
Sbjct: 876 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGK----- 927
Query: 302 LGEAGHQKSP 311
+G +GH +P
Sbjct: 928 MGPSGHAGTP 937
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 105/285 (36%), Gaps = 35/285 (12%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAP 81
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 627 GLPGDKGKDGLPGQQGPPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQP 686
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 687 GSSGNKGKPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGTI 734
Query: 142 SAPDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 195
+P LPG A D+ G + L G + L G S P L G P L GP
Sbjct: 735 GSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGDKGLLGDSGLPGLKGVYGKPGLLGPKG 794
Query: 196 --SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
+P PGP P PG S + G S AP PG S P G PG
Sbjct: 795 ERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIV 854
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
LPG P PG L G +P PG + P L GP
Sbjct: 855 KKGLPGLKGLPGNPG------LIGLKGSPGSPGVAGLPALSGPKG 893
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 89/247 (36%), Gaps = 18/247 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
V+ +P P G P L G S P +PG S + + G S LPG S P L G
Sbjct: 1009 VSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSSG---LPGTSGLPGLKG 1065
Query: 77 PSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
+ PGP P G GP PG G S L G
Sbjct: 1066 DNGQTLEISGSPGPKGQPGESGFKGTKGRDGPIGNIGFPGNKGEDGKVGVSGDVGLHGAP 1125
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
P + G P LPG S GP P L GP P PG LPG P
Sbjct: 1126 GFPGVAGMRGEPGLPGSSGHQGAIGPLGPPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTP 1185
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
GPS +PGP+ LPGP PG AP PG G P L GP+
Sbjct: 1186 GPSIT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAGL 1238
Query: 252 PDLPGPS 258
P PG S
Sbjct: 1239 PGAPGIS 1245
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 109/293 (37%), Gaps = 36/293 (12%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----P 81
P PGP LPG P LPG LPG +P LPG A D+ G +
Sbjct: 707 PGFPGPRGEKGLPG---FPGLPGKDG---LPGTIGSPGLPGSKGATGDIFGAENGAPGEQ 760
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLP 138
L G + L G S P L G P L GP +P PGP P PG S +
Sbjct: 761 GLQGLTGDKGLLGDSGLPGLKGVYGKPGLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIK 820
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G S P AP PG S P G PG LPG P PG
Sbjct: 821 GKSGLP------GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGNPG----- 869
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
L G +P PG + P L GP G P +PG P +PG +PG +
Sbjct: 870 -LIGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGST 925
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL-GEAGHQKS 310
GPS PG PGP +PGP + +L G+ G Q S
Sbjct: 926 GK---MGPSGHAGTPGEKGDRGNPGPVG---IPGPRRPMSNLWLKGDKGSQGS 972
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 68/193 (35%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG LPG + + G P +PG S + + G S LPG S
Sbjct: 1006 IKGVSGKPGPPGFMGIRGLPGLKGSSGITG---FPGMPGESGSQGIRGSSG---LPGTSG 1059
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P L G + PGP P G GP PG G S
Sbjct: 1060 LPGLKGDNGQTLEISGSPGPKGQPGESGFKGTKGRDGPIGNIGFPGNKGEDGKVGVSGDV 1119
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
L G P + G P LPG S GP P L GP P PG LPG
Sbjct: 1120 GLHGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGPPGLIGPKGFPGFPGLHGLNGLPGTK 1179
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1180 GTHGTPGPSITGV 1192
>gi|19115358|ref|NP_594446.1| SH3 domain-containing protein [Schizosaccharomyces pombe 972h-]
gi|74582121|sp|O42854.1|YFHH_SCHPO RecName: Full=SH3 domain-containing protein C23A1.17
gi|2879805|emb|CAA16991.1| WIP (Wiskott-Aldrich syndrome protein-Interacting Protein) homolog
(predicted) [Schizosaccharomyces pombe]
Length = 1611
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 96/158 (60%), Gaps = 21/158 (13%)
Query: 42 SSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPG 85
S AP +P PS+ AP +P PS+AP +P P+S P +P SS P +P
Sbjct: 1019 SKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPA 1078
Query: 86 PSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSA-PDLPGPSSAPDLPGPS-SAPDLPGPSS 142
PS AP +P PS P +P PS +AP +P PS A P +P PS AP +P PS +AP +P PS
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
Query: 143 APDLPGPS-SAPDLPGPSSAPDLPGPS-SAPDLPGPSS 178
AP +P PS +AP +P PS AP +P PS +AP +P PSS
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 96/158 (60%), Gaps = 21/158 (13%)
Query: 69 SSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPG 112
S AP +P PS+ AP +P PS+AP +P P+S P +P SS P +P
Sbjct: 1019 SKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPA 1078
Query: 113 PSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSA-PDLPGPSSAPDLPGPS-SAPDLPGPSS 169
PS AP +P PS P +P PS +AP +P PS A P +P PS AP +P PS +AP +P PS
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
Query: 170 APDLPGPS-SAPDLPGPSSAPDLPGPS-SAPDLPGPSS 205
AP +P PS +AP +P PS AP +P PS +AP +P PSS
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 96/158 (60%), Gaps = 21/158 (13%)
Query: 105 SSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPG 148
S AP +P PS+ AP +P PS+AP +P P+S P +P SS P +P
Sbjct: 1019 SKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPA 1078
Query: 149 PSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSA-PDLPGPSSAPDLPGPS-SAPDLPGPSS 205
PS AP +P PS P +P PS +AP +P PS A P +P PS AP +P PS +AP +P PS
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
Query: 206 APDLPGPS-SAPDLPGPSSAPDLPGPS-SAPDLPGPSS 241
AP +P PS +AP +P PS AP +P PS +AP +P PSS
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 96/158 (60%), Gaps = 21/158 (13%)
Query: 141 SSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPG 184
S AP +P PS+ AP +P PS+AP +P P+S P +P SS P +P
Sbjct: 1019 SKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPA 1078
Query: 185 PSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSA-PDLPGPSSAPDLPGPS-SAPDLPGPSS 241
PS AP +P PS P +P PS +AP +P PS A P +P PS AP +P PS +AP +P PS
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
Query: 242 APDLPGPS-SAPDLPGPSSAPDLPGPS-SAPDLPGPSS 277
AP +P PS +AP +P PS AP +P PS +AP +P PSS
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 86/143 (60%), Gaps = 20/143 (13%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPGPSSAPDLPGPSSAPD 73
+P PS+AP +P P+S P +P SS P +P PS AP +P PS P
Sbjct: 1034 IPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP 1093
Query: 74 LPGPS-SAPDLPGPSSA-PDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPS-SAPDLP 129
+P PS +AP +P PS A P +P PS AP +P PS +AP +P PS AP +P PS +AP +P
Sbjct: 1094 VPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVP 1153
Query: 130 GPSSAPDLPGPS-SAPDLPGPSS 151
PS AP +P PS +AP +P PSS
Sbjct: 1154 APSGAPPVPKPSVAAPPVPAPSS 1176
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 62/109 (56%), Gaps = 18/109 (16%)
Query: 204 SSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPG 247
S AP +P PS+ AP +P PS+AP +P P+S P +P SS P +P
Sbjct: 1019 SKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPA 1078
Query: 248 PSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSA-PDLPGPSSAPDLPGPS 294
PS AP +P PS P +P PS +AP +P PS A P +P PS AP +P PS
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPS 1127
>gi|149057575|gb|EDM08818.1| procollagen, type IV, alpha 1, isoform CRA_a [Rattus norvegicus]
Length = 1098
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 116/328 (35%), Gaps = 50/328 (15%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 83
P L G S P LPG P +PG P S ++ G P PGP+ AP LPG
Sbjct: 280 PGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGAPGLPGEKGDHGF 339
Query: 84 PG---PSSAPDLPGPSS---APDLPGPSSAPDL--------------------------- 110
PG P P G P +PG D+
Sbjct: 340 PGSSGPRGDPGFKGDKGDVGLPGMPGSMEHVDMGSMKGQKGDQGEKGQIGPTGDKGSRGD 399
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
PG P G + P PGP P L G +P LPGP + P PG P +
Sbjct: 400 PGTPGVPGKDGQAGHPGQPGPKGDPGLSGIPGSPGLPGPKGSVGGMGLPGSPGEKGVPGI 459
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PG P PG A G S P + P PG L G +P G +
Sbjct: 460 PGSQGVPGSPGEKGAKGEKGQSGLPGI----GIPGRPGDKGDQGLAGFPGSPGEKGEKGS 515
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
PG P PGP +P G +P LPG LPG P + G + P PGP
Sbjct: 516 AGTPG---MPGSPGPRGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGTPGP 572
Query: 285 SSAPDLPG-PSSTVLGSYLGEAGHQKSP 311
+ G P S + GE G Q P
Sbjct: 573 TGPAGQKGEPGSDGIPGSAGEKGEQGLP 600
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 107/324 (33%), Gaps = 71/324 (21%)
Query: 28 DLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
D+PGP P L G S P LPG P +PG PG + G P
Sbjct: 266 DMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPG------FPGSKGEMGVMGTPGQP 319
Query: 82 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
PGP+ AP LPG PG P P G LPG +PG D+
Sbjct: 320 GSPGPAGAPGLPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPG------MPGSMEHVDM- 372
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS 195
S G GP+ G P +PG + P PGP P L G
Sbjct: 373 --GSMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLSGIP 430
Query: 196 SAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---- 245
+P LPGP + P PG P +PG P PG A G S P +
Sbjct: 431 GSPGLPGPKGSVGGMGLPGSPGEKGVPGIPGSQGVPGSPGEKGAKGEKGQSGLPGIGIPG 490
Query: 246 ----------------------------------PGPSSAPDLPGPSSAPDLPGPSSAPD 271
PGP +P G +P LPG
Sbjct: 491 RPGDKGDQGLAGFPGSPGEKGEKGSAGTPGMPGSPGPRGSPGNIGHPGSPGLPGEKGDKG 550
Query: 272 LPGPSSAPDLPGPSSAPDLPGPSS 295
LPG P + G + P PGP+
Sbjct: 551 LPGLDGVPGVKGEAGLPGTPGPTG 574
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 106/313 (33%), Gaps = 71/313 (22%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPGP A LPG +P PGP LPG P PG PG + P PGP
Sbjct: 108 LPGPPGAAGLPG---SPGFPGPQGVDGLPGEIGRPGSPG------RPGFNGLPGNPGPQG 158
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
PG LPG P LPG P G P +PG PG PG
Sbjct: 159 QKGEPGIG----LPGLKGQPGLPGIPGTPGEKGSIGGPGVPGEQGLTGPPGLQGIRGDPG 214
Query: 149 P--------------------------------SSAPDLPGPSSAPDLPGPSSAPDLPGP 176
P S P + G P PG D+PGP
Sbjct: 215 PPGVQGPAGPPGVPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPG----LDMPGP 270
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
G P L G S P LPG P +PG PG + G P
Sbjct: 271 KGD---KGSQGLPGLTGQSGLPGLPGQQGTPGVPG------FPGSKGEMGVMGTPGQPGS 321
Query: 237 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
PGP+ AP LPG PG S GP P G LPG +PG
Sbjct: 322 PGPAGAPGLPGEKGDHGFPGSS------GPRGDPGFKGDKGDVGLPG------MPGSMEH 369
Query: 297 V-LGSYLGEAGHQ 308
V +GS G+ G Q
Sbjct: 370 VDMGSMKGQKGDQ 382
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 110/334 (32%), Gaps = 59/334 (17%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 72
D LP + RP P PG + P PGP PG LPG P LPG P
Sbjct: 129 VDGLPGEIG-RPGSPGRPGFNGLPGNPGPQGQKGEPGIG----LPGLKGQPGLPGIPGTP 183
Query: 73 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---------------------------- 104
G P +PG PG PGP
Sbjct: 184 GEKGSIGGPGVPGEQGLTGPPGLQGIRGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGQG 243
Query: 105 ----SSAPDLPGPSSAPDLPGPSSAPDLPGPSS------APDLPGPSSAPDLPGPSSAPD 154
S P + G P PG D+PGP P L G S P LPG P
Sbjct: 244 PPGSSGPPGVKGEKGFPGFPGL----DMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPG 299
Query: 155 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPG 211
+PG PG + G P PGP+ AP LPG PG P P G
Sbjct: 300 VPG------FPGSKGEMGVMGTPGQPGSPGPAGAPGLPGEKGDHGFPGSSGPRGDPGFKG 353
Query: 212 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SS 268
LPG + + S G GP+ G P +PG +
Sbjct: 354 DKGDVGLPGMPGSMEHVDMGSMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAG 413
Query: 269 APDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL 302
P PGP P L G +P LPGP +V G L
Sbjct: 414 HPGQPGPKGDPGLSGIPGSPGLPGPKGSVGGMGL 447
>gi|444706107|gb|ELW47467.1| Collagen alpha-1(IV) chain [Tupaia chinensis]
Length = 1559
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 84/239 (35%), Gaps = 30/239 (12%)
Query: 55 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 114
D+PGP G P L G S P LPG P LPG PGP + G
Sbjct: 833 DMPGPKGDK---GAQGLPGLTGQSGLPGLPGQQGTPGLPG------FPGPKGEMGVMGTP 883
Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
P PGP P LPG PG S GP P G LPG + D
Sbjct: 884 GQPGSPGPVGTPGLPGEKGDHGFPGSS------GPRGDPGFKGDKGDVGLPGKPGSMDKV 937
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP------------SSAPDLPGPS 222
S G GP+ G +P +PG P + G
Sbjct: 938 DMGSMKGQKGDQGEKGQVGPTGDKGSRGDPGSPGVPGKDGQPGQPGQQGPKGDPGISGTP 997
Query: 223 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
AP LPGP + G P PG AP +PGP P LPG A + G + P +
Sbjct: 998 GAPGLPGPKGSV---GGMGLPGTPGEKGAPGIPGPQGVPGLPGEKGAKGVKGQAGLPGI 1053
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 70/207 (33%), Gaps = 42/207 (20%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P L G S P LPG P LPG P + G P PGP P LPG
Sbjct: 847 PGLTGQSGLPGLPGQQGTPGLPGFPGPKGEMGVMGTPGQPGSPGPVGTPGLPGEKGDHGF 906
Query: 84 PG---PSSAPDLPGPSSAPDLPGP---------SSAPDLPGPSSAPDLPGPSS------- 124
PG P P G LPG S G GP+
Sbjct: 907 PGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQVGPTGDKGSRGD 966
Query: 125 --APDLPGP------------SSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
+P +PG P + G AP LPGP + P PG AP +
Sbjct: 967 PGSPGVPGKDGQPGQPGQQGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGAPGI 1026
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDL 191
PGP P LPG A + G + P +
Sbjct: 1027 PGPQGVPGLPGEKGAKGVKGQAGLPGI 1053
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 104/330 (31%), Gaps = 78/330 (23%)
Query: 29 LPGPSSAPDLPGPSSAP---------------DLPGPSSAPDLPGPSSAPDLPGPSSA-- 71
LPG P LPG P + GP + G P L GP +
Sbjct: 734 LPGLKGLPGLPGIPGTPGEKGNVGGPGVPGEHGVVGPPGLQGIRGDPGPPGLQGPVGSPG 793
Query: 72 ------------------------PDLPGPSSAPDLPGPSSAPDLPGPS------SAPDL 101
P + G P PG D+PGP P L
Sbjct: 794 APGLGPPGAMGPPGGQGPPGSSGPPGIKGEKGFPGFPG----LDMPGPKGDKGAQGLPGL 849
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
G S P LPG P LPG PGP + G P PGP P LPG
Sbjct: 850 TGQSGLPGLPGQQGTPGLPG------FPGPKGEMGVMGTPGQPGSPGPVGTPGLPGEKGD 903
Query: 162 PDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
P GP P G LPG + D S G GP+
Sbjct: 904 HGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQVGPTGDKGS 963
Query: 219 PGPSSAPDLPGP------------SSAPDLPGPSSAPDLPGPSSA------PDLPGPSSA 260
G +P +PG P + G AP LPGP + P PG A
Sbjct: 964 RGDPGSPGVPGKDGQPGQPGQQGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGA 1023
Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
P +PGP P LPG A + G + P +
Sbjct: 1024 PGIPGPQGVPGLPGEKGAKGVKGQAGLPGI 1053
>gi|410911224|ref|XP_003969090.1| PREDICTED: collagen alpha-2(VIII) chain-like [Takifugu rubripes]
Length = 743
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 102/284 (35%), Gaps = 28/284 (9%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P +PG P L G S P +PG PGP P LPG LPG P PG
Sbjct: 254 KPGIPGIRGPPGLKGNSGQPGIPGIGK----PGPKGLPGLPGLKGDHGLPGNQGQPGEPG 309
Query: 86 PSSAPDLPGP-----SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
LPGP S LPG AP GP P + G P PG P L GP
Sbjct: 310 APGLQGLPGPVGVGKSGVDGLPG---APGSIGPKGEPGVRGSPGFPGSPG-YGKPGLTGP 365
Query: 141 ------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
+ P LPG + GPS P G P L GP LPG L G
Sbjct: 366 KGDKGHAGLPGLPGDKGEEGMMGPSGEPGNDGQPGPPGLQGPMG---LPGKHGLTGLKGE 422
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
PG GPS P G PGP+ + PGP G P L
Sbjct: 423 LGPQGPPGLPGLRGDQGPSGVPGKNGMPGEKGFPGPNGSIGKPGPKGEAGHIGLPGNPGL 482
Query: 255 PGPSSAPDLPGPSSAPDLPGPSSAPDLP------GPSSAPDLPG 292
GPS PG P G S P L GP AP L G
Sbjct: 483 MGPSGPKGEPGFIGTPGPRGQSGIPGLQGPMGPMGPQGAPGLKG 526
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 99/351 (28%), Positives = 116/351 (33%), Gaps = 68/351 (19%)
Query: 1 MIAPFDKHVFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 60
M+ VF A P + ++P + GP P G D+P PGP
Sbjct: 67 MLLMLGAQVF--AGGYPPIPHMKYMQPMMKGPIGPPFREGKGHYVDMPPLMEVKGEPGPQ 124
Query: 61 SA--------------------PDLPGPSSA--------------PDLPGPSSAPDLP-- 84
P L G P LPG +
Sbjct: 125 GKPGLRGPSGPPGPQGKPGLGKPGLNGQQGPPGPPGFPGMGKPGLPGLPGKIGPKGMQGS 184
Query: 85 ----GPSSAPDLPGPSSAPDLPGP-----SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
GP P G + P LPGP + P LPG P + G GP+ P
Sbjct: 185 NGEVGPRGEPGPRGLTGQPGLPGPAGLSLNGKPGLPGMRGPPGMRGEPGIKGGQGPAGEP 244
Query: 136 DLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
L G + P +PG P L G S P +PG PGP P LPG LPG
Sbjct: 245 GLKGENGNGKPGIPGIRGPPGLKGNSGQPGIPGIGK----PGPKGLPGLPGLKGDHGLPG 300
Query: 194 PSSAPDLPGPSSAPDLPGP-----SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
P PG LPGP S LPG AP GP P + G P PG
Sbjct: 301 NQGQPGEPGAPGLQGLPGPVGVGKSGVDGLPG---APGSIGPKGEPGVRGSPGFPGSPG- 356
Query: 249 SSAPDLPGP------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
P L GP + P LPG + GPS P G P L GP
Sbjct: 357 YGKPGLTGPKGDKGHAGLPGLPGDKGEEGMMGPSGEPGNDGQPGPPGLQGP 407
>gi|402911085|ref|XP_003918173.1| PREDICTED: collagen alpha-6(IV) chain isoform 4 [Papio anubis]
Length = 1630
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 115/310 (37%), Gaps = 40/310 (12%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 657 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGNKGKPGSPGLVHLPELPGFPGPR 713
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 714 GEKGLPG---FPGLPGKDG---LPGTIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 767
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
L G S P L G P L GP +P PGP P PG S + G S P
Sbjct: 768 DKGLLGDSGLPGLKGVYGKPGLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLP- 826
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 827 -----GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGNPG------LIGLKG 875
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSY 301
+P PG + P L GP G P +PG P +PG +PG +
Sbjct: 876 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGK----- 927
Query: 302 LGEAGHQKSP 311
+G +GH +P
Sbjct: 928 MGPSGHAGTP 937
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 105/284 (36%), Gaps = 35/284 (12%)
Query: 29 LPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPD 82
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 628 LPGDKGKDGLPGQQGPPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQPG 687
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 688 SSGNKGKPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGTIG 735
Query: 143 APDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-- 195
+P LPG A D+ G + L G + L G S P L G P L GP
Sbjct: 736 SPGLPGSKGATGDIFGAENGAPGEQGLQGLTGDKGLLGDSGLPGLKGVYGKPGLLGPKGE 795
Query: 196 -SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
+P PGP P PG S + G S AP PG S P G PG
Sbjct: 796 RGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIVK 855
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
LPG P PG L G +P PG + P L GP
Sbjct: 856 KGLPGLKGLPGNPG------LIGLKGSPGSPGVAGLPALSGPKG 893
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 111/300 (37%), Gaps = 36/300 (12%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPS 78
+ P P PGP LPG P LPG LPG +P LPG A D+ G
Sbjct: 700 LVHLPELPGFPGPRGEKGLPG---FPGLPGKDG---LPGTIGSPGLPGSKGATGDIFGAE 753
Query: 79 SA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGP 131
+ L G + L G S P L G P L GP +P PGP P PG
Sbjct: 754 NGAPGEQGLQGLTGDKGLLGDSGLPGLKGVYGKPGLLGPKGERGSPGTPGPVGQPGTPGS 813
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
S + G S P AP PG S P G PG LPG P
Sbjct: 814 SGPYGIKGKSGLP------GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGN 867
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
PG L G +P PG + P L GP G P +PG P +PG
Sbjct: 868 PG------LIGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGL 918
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL-GEAGHQKS 310
+PG + GPS PG PGP +PGP + +L G+ G Q S
Sbjct: 919 KGIPGSTGK---MGPSGHAGTPGEKGDRGNPGPVG---IPGPRRPMSNLWLKGDKGSQGS 972
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 80/222 (36%), Gaps = 19/222 (8%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
V+ +P P G P L G S P +PG S + + G S LPG S P L G
Sbjct: 1009 VSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSSG---LPGTSGLPGLKG 1065
Query: 77 PSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
+ PGP P G GP PG G S L G
Sbjct: 1066 DNGQTLEISGSPGPKGQPGESGFKGTKGRDGPIGNIGFPGNKGEDGKVGVSGDVGLHGAP 1125
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPD 190
P + G P LPG S GP P L GP S +PGP+ LPGP
Sbjct: 1126 GFPGVAGMRGEPGLPGSSGHQGAIGPLGPPGLIGPKGPSITGVPGPAG---LPGPKGEKG 1182
Query: 191 LPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
PG AP PG G P L GP+ P PG S
Sbjct: 1183 YPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAGLPGAPGIS 1221
>gi|297304547|ref|XP_002806395.1| PREDICTED: collagen alpha-6(IV) chain [Macaca mulatta]
Length = 1630
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 115/310 (37%), Gaps = 40/310 (12%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 657 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGNKGKPGSPGLVHLPELPGFPGPR 713
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 714 GEKGLPG---FPGLPGKDG---LPGTIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 767
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
L G S P L G P L GP +P PGP P PG S + G S P
Sbjct: 768 DKGLLGDSGLPGLKGVYGKPGLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLP- 826
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 827 -----GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGNPG------LIGLKG 875
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSY 301
+P PG + P L GP G P +PG P +PG +PG +
Sbjct: 876 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGK----- 927
Query: 302 LGEAGHQKSP 311
+G +GH +P
Sbjct: 928 MGPSGHAGTP 937
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 105/284 (36%), Gaps = 35/284 (12%)
Query: 29 LPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPD 82
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 628 LPGDKGKDGLPGQQGPPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQPG 687
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 688 SSGNKGKPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGTIG 735
Query: 143 APDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-- 195
+P LPG A D+ G + L G + L G S P L G P L GP
Sbjct: 736 SPGLPGSKGATGDIFGAENGAPGEQGLQGLTGDKGLLGDSGLPGLKGVYGKPGLLGPKGE 795
Query: 196 -SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
+P PGP P PG S + G S AP PG S P G PG
Sbjct: 796 RGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIVK 855
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
LPG P PG L G +P PG + P L GP
Sbjct: 856 KGLPGLKGLPGNPG------LIGLKGSPGSPGVAGLPALSGPKG 893
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 109/293 (37%), Gaps = 36/293 (12%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----P 81
P PGP LPG P LPG LPG +P LPG A D+ G +
Sbjct: 707 PGFPGPRGEKGLPG---FPGLPGKDG---LPGTIGSPGLPGSKGATGDIFGAENGAPGEQ 760
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLP 138
L G + L G S P L G P L GP +P PGP P PG S +
Sbjct: 761 GLQGLTGDKGLLGDSGLPGLKGVYGKPGLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIK 820
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G S P AP PG S P G PG LPG P PG
Sbjct: 821 GKSGLP------GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGNPG----- 869
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
L G +P PG + P L GP G P +PG P +PG +PG +
Sbjct: 870 -LIGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGST 925
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL-GEAGHQKS 310
GPS PG PGP +PGP + +L G+ G Q S
Sbjct: 926 GK---MGPSGHAGTPGEKGDRGNPGPVG---IPGPRRPMSNLWLKGDKGSQGS 972
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 80/222 (36%), Gaps = 19/222 (8%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
V+ +P P G P L G S P +PG S + + G S LPG S P L G
Sbjct: 1009 VSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSSG---LPGTSGLPGLKG 1065
Query: 77 PSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
+ PGP P G GP PG G S L G
Sbjct: 1066 DNGQTLEISGSPGPKGQPGESGFKGTKGRDGPIGNIGFPGNKGEDGKVGVSGDVGLHGAP 1125
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPD 190
P + G P LPG S GP P L GP S +PGP+ LPGP
Sbjct: 1126 GFPGVAGMRGEPGLPGSSGHQGAIGPLGPPGLIGPKGPSITGVPGPAG---LPGPKGEKG 1182
Query: 191 LPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
PG AP PG G P L GP+ P PG S
Sbjct: 1183 YPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAGLPGAPGIS 1221
>gi|297304545|ref|XP_002806394.1| PREDICTED: collagen alpha-6(IV) chain [Macaca mulatta]
Length = 1663
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 115/310 (37%), Gaps = 40/310 (12%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 657 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGNKGKPGSPGLVHLPELPGFPGPR 713
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 714 GEKGLPG---FPGLPGKDG---LPGTIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 767
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
L G S P L G P L GP +P PGP P PG S + G S P
Sbjct: 768 DKGLLGDSGLPGLKGVYGKPGLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLP- 826
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 827 -----GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGNPG------LIGLKG 875
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSY 301
+P PG + P L GP G P +PG P +PG +PG +
Sbjct: 876 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGK----- 927
Query: 302 LGEAGHQKSP 311
+G +GH +P
Sbjct: 928 MGPSGHAGTP 937
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 105/284 (36%), Gaps = 35/284 (12%)
Query: 29 LPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPD 82
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 628 LPGDKGKDGLPGQQGPPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQPG 687
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 688 SSGNKGKPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGTIG 735
Query: 143 APDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-- 195
+P LPG A D+ G + L G + L G S P L G P L GP
Sbjct: 736 SPGLPGSKGATGDIFGAENGAPGEQGLQGLTGDKGLLGDSGLPGLKGVYGKPGLLGPKGE 795
Query: 196 -SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
+P PGP P PG S + G S AP PG S P G PG
Sbjct: 796 RGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIVK 855
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
LPG P PG L G +P PG + P L GP
Sbjct: 856 KGLPGLKGLPGNPG------LIGLKGSPGSPGVAGLPALSGPKG 893
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 109/293 (37%), Gaps = 36/293 (12%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----P 81
P PGP LPG P LPG LPG +P LPG A D+ G +
Sbjct: 707 PGFPGPRGEKGLPG---FPGLPGKDG---LPGTIGSPGLPGSKGATGDIFGAENGAPGEQ 760
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLP 138
L G + L G S P L G P L GP +P PGP P PG S +
Sbjct: 761 GLQGLTGDKGLLGDSGLPGLKGVYGKPGLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIK 820
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G S P AP PG S P G PG LPG P PG
Sbjct: 821 GKSGLP------GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGNPG----- 869
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
L G +P PG + P L GP G P +PG P +PG +PG +
Sbjct: 870 -LIGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGST 925
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL-GEAGHQKS 310
GPS PG PGP +PGP + +L G+ G Q S
Sbjct: 926 GK---MGPSGHAGTPGEKGDRGNPGPVG---IPGPRRPMSNLWLKGDKGSQGS 972
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 80/222 (36%), Gaps = 19/222 (8%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
V+ +P P G P L G S P +PG S + + G S LPG S P L G
Sbjct: 1009 VSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSSG---LPGTSGLPGLKG 1065
Query: 77 PSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
+ PGP P G GP PG G S L G
Sbjct: 1066 DNGQTLEISGSPGPKGQPGESGFKGTKGRDGPIGNIGFPGNKGEDGKVGVSGDVGLHGAP 1125
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPD 190
P + G P LPG S GP P L GP S +PGP+ LPGP
Sbjct: 1126 GFPGVAGMRGEPGLPGSSGHQGAIGPLGPPGLIGPKGPSITGVPGPAG---LPGPKGEKG 1182
Query: 191 LPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
PG AP PG G P L GP+ P PG S
Sbjct: 1183 YPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAGLPGAPGIS 1221
>gi|161086980|ref|NP_631887.2| chloride channel calcium activated 4 precursor [Mus musculus]
Length = 1044
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 83/151 (54%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 91
PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P
Sbjct: 882 PSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPG 941
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+
Sbjct: 942 LSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPST 1001
Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
P L PS+ P L PS+ P L S P L
Sbjct: 1002 PPGLSTPSTPPGLSTPSTPPGLGTKVSVPSL 1032
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 83/151 (54%)
Query: 41 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 100
PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P
Sbjct: 882 PSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPG 941
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+
Sbjct: 942 LSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPST 1001
Query: 161 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
P L PS+ P L PS+ P L S P L
Sbjct: 1002 PPGLSTPSTPPGLSTPSTPPGLGTKVSVPSL 1032
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 83/151 (54%)
Query: 50 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 109
PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P
Sbjct: 882 PSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPG 941
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+
Sbjct: 942 LSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPST 1001
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
P L PS+ P L PS+ P L S P L
Sbjct: 1002 PPGLSTPSTPPGLSTPSTPPGLGTKVSVPSL 1032
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 83/151 (54%)
Query: 59 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 118
PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P
Sbjct: 882 PSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPG 941
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+
Sbjct: 942 LSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPST 1001
Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
P L PS+ P L PS+ P L S P L
Sbjct: 1002 PPGLSTPSTPPGLSTPSTPPGLGTKVSVPSL 1032
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 83/151 (54%)
Query: 68 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 127
PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P
Sbjct: 882 PSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPG 941
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+
Sbjct: 942 LSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPST 1001
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
P L PS+ P L PS+ P L S P L
Sbjct: 1002 PPGLSTPSTPPGLSTPSTPPGLGTKVSVPSL 1032
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 83/151 (54%)
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P
Sbjct: 882 PSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPG 941
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+
Sbjct: 942 LSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPST 1001
Query: 197 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 227
P L PS+ P L PS+ P L S P L
Sbjct: 1002 PPGLSTPSTPPGLSTPSTPPGLGTKVSVPSL 1032
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 83/151 (54%)
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P
Sbjct: 882 PSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPG 941
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+
Sbjct: 942 LSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPST 1001
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
P L PS+ P L PS+ P L S P L
Sbjct: 1002 PPGLSTPSTPPGLSTPSTPPGLGTKVSVPSL 1032
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 83/151 (54%)
Query: 95 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 154
PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P
Sbjct: 882 PSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPG 941
Query: 155 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 214
L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+
Sbjct: 942 LSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPST 1001
Query: 215 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
P L PS+ P L PS+ P L S P L
Sbjct: 1002 PPGLSTPSTPPGLSTPSTPPGLGTKVSVPSL 1032
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 83/151 (54%)
Query: 104 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 163
PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P
Sbjct: 882 PSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPG 941
Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 223
L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+
Sbjct: 942 LSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPST 1001
Query: 224 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
P L PS+ P L PS+ P L S P L
Sbjct: 1002 PPGLSTPSTPPGLSTPSTPPGLGTKVSVPSL 1032
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 83/151 (54%)
Query: 113 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 172
PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P
Sbjct: 882 PSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPG 941
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+
Sbjct: 942 LSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPST 1001
Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
P L PS+ P L PS+ P L S P L
Sbjct: 1002 PPGLSTPSTPPGLSTPSTPPGLGTKVSVPSL 1032
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 83/151 (54%)
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P
Sbjct: 882 PSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPG 941
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+
Sbjct: 942 LSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPST 1001
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
P L PS+ P L PS+ P L S P L
Sbjct: 1002 PPGLSTPSTPPGLSTPSTPPGLGTKVSVPSL 1032
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 83/151 (54%)
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P
Sbjct: 882 PSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPG 941
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+
Sbjct: 942 LSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPST 1001
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
P L PS+ P L PS+ P L S P L
Sbjct: 1002 PPGLSTPSTPPGLSTPSTPPGLGTKVSVPSL 1032
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 83/151 (54%)
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P
Sbjct: 882 PSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPG 941
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+
Sbjct: 942 LSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPST 1001
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
P L PS+ P L PS+ P L S P L
Sbjct: 1002 PPGLSTPSTPPGLSTPSTPPGLGTKVSVPSL 1032
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 80/147 (54%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L P
Sbjct: 886 PGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTP 945
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
S+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L
Sbjct: 946 STPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGL 1005
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDL 173
PS+ P L PS+ P L S P L
Sbjct: 1006 STPSTPPGLSTPSTPPGLGTKVSVPSL 1032
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 78/138 (56%)
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P
Sbjct: 882 PSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPG 941
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+ P L PS+
Sbjct: 942 LSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPSTPPGLSTPST 1001
Query: 278 APDLPGPSSAPDLPGPSS 295
P L PS+ P L PS+
Sbjct: 1002 PPGLSTPSTPPGLSTPST 1019
>gi|402911083|ref|XP_003918172.1| PREDICTED: collagen alpha-6(IV) chain isoform 3 [Papio anubis]
Length = 1663
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 115/310 (37%), Gaps = 40/310 (12%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 657 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGNKGKPGSPGLVHLPELPGFPGPR 713
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 714 GEKGLPG---FPGLPGKDG---LPGTIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 767
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
L G S P L G P L GP +P PGP P PG S + G S P
Sbjct: 768 DKGLLGDSGLPGLKGVYGKPGLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIKGKSGLP- 826
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 827 -----GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGNPG------LIGLKG 875
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSY 301
+P PG + P L GP G P +PG P +PG +PG +
Sbjct: 876 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGK----- 927
Query: 302 LGEAGHQKSP 311
+G +GH +P
Sbjct: 928 MGPSGHAGTP 937
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 105/284 (36%), Gaps = 35/284 (12%)
Query: 29 LPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPD 82
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 628 LPGDKGKDGLPGQQGPPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQPG 687
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 688 SSGNKGKPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGTIG 735
Query: 143 APDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-- 195
+P LPG A D+ G + L G + L G S P L G P L GP
Sbjct: 736 SPGLPGSKGATGDIFGAENGAPGEQGLQGLTGDKGLLGDSGLPGLKGVYGKPGLLGPKGE 795
Query: 196 -SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
+P PGP P PG S + G S AP PG S P G PG
Sbjct: 796 RGSPGTPGPVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGEKGPPGSIVK 855
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
LPG P PG L G +P PG + P L GP
Sbjct: 856 KGLPGLKGLPGNPG------LIGLKGSPGSPGVAGLPALSGPKG 893
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 109/293 (37%), Gaps = 36/293 (12%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----P 81
P PGP LPG P LPG LPG +P LPG A D+ G +
Sbjct: 707 PGFPGPRGEKGLPG---FPGLPGKDG---LPGTIGSPGLPGSKGATGDIFGAENGAPGEQ 760
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLP 138
L G + L G S P L G P L GP +P PGP P PG S +
Sbjct: 761 GLQGLTGDKGLLGDSGLPGLKGVYGKPGLLGPKGERGSPGTPGPVGQPGTPGSSGPYGIK 820
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G S P AP PG S P G PG LPG P PG
Sbjct: 821 GKSGLP------GAPGFPGTSGHPGKKGTRGEKGPPGSIVKKGLPGLKGLPGNPG----- 869
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
L G +P PG + P L GP G P +PG P +PG +PG +
Sbjct: 870 -LIGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGST 925
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL-GEAGHQKS 310
GPS PG PGP +PGP + +L G+ G Q S
Sbjct: 926 GK---MGPSGHAGTPGEKGDRGNPGPVG---IPGPRRPMSNLWLKGDKGSQGS 972
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 80/222 (36%), Gaps = 19/222 (8%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
V+ +P P G P L G S P +PG S + + G S LPG S P L G
Sbjct: 1009 VSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSSG---LPGTSGLPGLKG 1065
Query: 77 PSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
+ PGP P G GP PG G S L G
Sbjct: 1066 DNGQTLEISGSPGPKGQPGESGFKGTKGRDGPIGNIGFPGNKGEDGKVGVSGDVGLHGAP 1125
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPD 190
P + G P LPG S GP P L GP S +PGP+ LPGP
Sbjct: 1126 GFPGVAGMRGEPGLPGSSGHQGAIGPLGPPGLIGPKGPSITGVPGPAG---LPGPKGEKG 1182
Query: 191 LPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
PG AP PG G P L GP+ P PG S
Sbjct: 1183 YPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAGLPGAPGIS 1221
>gi|392355911|ref|XP_003752170.1| PREDICTED: collagen alpha-6(IV) chain-like [Rattus norvegicus]
Length = 1575
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 115/327 (35%), Gaps = 32/327 (9%)
Query: 25 LEPDLPGPSSAPDLPGPSSAPDLPGPSS-------APDLP--GPSSAPDLPGPSSAPDLP 75
+EP LPG L G + G S AP++ G S P + GP +
Sbjct: 452 IEPGLPGLQGEQGLKGHQGIKGVKGDSGFCACEGGAPNIGPHGESGLPGIQGPIGLRGIK 511
Query: 76 GPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDL--PGPSSAPDL- 128
G P GP+ P L GP L G P + G A D PGP P L
Sbjct: 512 GTRGDPGSRGASGPTGTPGLFGPRGQTGLKGKKGEPTVSRGSKMAGDKGDPGPQGIPGLA 571
Query: 129 --PGPSSAPDLPG-PSSAPD----LPGPSSAPDLPGPSS--APDLPGPSSAPDLPGPSSA 179
PG P LPG P + D PG P LPG P P P LPGP
Sbjct: 572 GAPGKDGIPGLPGFPGTQGDDGSGFPGERGLPGLPGEKGHDGPTGPRGIGLPGLPGPRGL 631
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDL 236
P G P G A + P P GPS AP PG A LPG P
Sbjct: 632 PGDKGVDGLPGQQGLRGAKGVTLPCIIPGSYGPSGFPGAPGFPGSKGARGLPGIPGKPGT 691
Query: 237 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
G P PG P PG P G P PG PG + +P +PG S
Sbjct: 692 HGSKGEPGSPGLIHLPGFPG---FPGARGEKGLPGFPGLLGKHGYPGKAGSPGVPG-SKG 747
Query: 297 VLGSYLGEAGHQKSPKGLEPKPAQISF 323
V G G +GL+ P F
Sbjct: 748 VAGDIFGAENGASGEQGLQGLPGDKGF 774
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 95/267 (35%), Gaps = 25/267 (9%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDL--PGPSSAPDL---PGPSSAPDLP 93
GP+ P L GP L G P + G A D PGP P L PG P LP
Sbjct: 524 GPTGTPGLFGPRGQTGLKGKKGEPTVSRGSKMAGDKGDPGPQGIPGLAGAPGKDGIPGLP 583
Query: 94 G-PSSAPD----LPGPSSAPDLPGPSS--APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
G P + D PG P LPG P P P LPGP P G P
Sbjct: 584 GFPGTQGDDGSGFPGERGLPGLPGEKGHDGPTGPRGIGLPGLPGPRGLPGDKGVDGLPGQ 643
Query: 147 PGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
G A + P P GPS AP PG A LPG P G P PG
Sbjct: 644 QGLRGAKGVTLPCIIPGSYGPSGFPGAPGFPGSKGARGLPGIPGKPGTHGSKGEPGSPGL 703
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSSAPD 262
P PG P G P PG PG + +P +PG A D+ G +
Sbjct: 704 IHLPGFPG---FPGARGEKGLPGFPGLLGKHGYPGKAGSPGVPGSKGVAGDIFGAENGAS 760
Query: 263 LPGPSSAPDLPGPSSAP---DLPGPSS 286
G LPG P LPGP
Sbjct: 761 --GEQGLQGLPGDKGFPGDSGLPGPKG 785
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 79/232 (34%), Gaps = 19/232 (8%)
Query: 39 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--APDLPGPSSAPDLPGPSS--APDLPG 94
PGP P L G AP G P PG PG P LPG P P
Sbjct: 562 PGPQGIPGLAG---APGKDGIPGLPGFPGTQGDDGSGFPGERGLPGLPGEKGHDGPTGPR 618
Query: 95 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSS 151
P LPGP P G P G A + P P GPS AP PG
Sbjct: 619 GIGLPGLPGPRGLPGDKGVDGLPGQQGLRGAKGVTLPCIIPGSYGPSGFPGAPGFPGSKG 678
Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
A LPG P G P PG P PG P G P PG PG
Sbjct: 679 ARGLPGIPGKPGTHGSKGEPGSPGLIHLPGFPG---FPGARGEKGLPGFPGLLGKHGYPG 735
Query: 212 PSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSS 259
+ +P +PG A D+ G + G LPG P LPGP
Sbjct: 736 KAGSPGVPGSKGVAGDIFGAENGAS--GEQGLQGLPGDKGFPGDSGLPGPKG 785
>gi|344284671|ref|XP_003414088.1| PREDICTED: collagen alpha-1(IV) chain-like [Loxodonta africana]
Length = 1632
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 70/182 (38%), Gaps = 13/182 (7%)
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
PG P G + P PGP P L G AP LPGP + P PG P +
Sbjct: 934 PGTPGVPGKDGQAGHPGQPGPKGDPGLGGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 993
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PGP P LPG G + P + P PG L G +P G +
Sbjct: 994 PGPQGVPGLPGEKGTKGEKGQAGQPGV----GVPGRPGEKGDQGLAGFPGSPGEKGEKGS 1049
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
+PG P PGP P G +P LPG LPG P + G + P PGP
Sbjct: 1050 TGIPG---MPGTPGPKGLPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGRPGP 1106
Query: 285 SS 286
+
Sbjct: 1107 TG 1108
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 81/224 (36%), Gaps = 20/224 (8%)
Query: 66 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 119
PG P G + P PGP P L G AP LPGP + P PG P +
Sbjct: 934 PGTPGVPGKDGQAGHPGQPGPKGDPGLGGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 993
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
PGP P LPG G + P + G P G PG G +
Sbjct: 994 PGPQGVPGLPGEKGTKGEKGQAGQPGV-GVPGRPGEKGDQGLAGFPGSPGEKGEKGSTGI 1052
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
P +PG PGP P G +P LPG LPG P + G + P PGP
Sbjct: 1053 PGMPG------TPGPKGLPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGRPGP 1106
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
+ GP+ PG P G LPG P PG
Sbjct: 1107 T------GPAGQKGEPGSDGIPGSAGEKGESGLPG-RGFPGFPG 1143
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 74/224 (33%), Gaps = 36/224 (16%)
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDL------------ 146
D+PGP G P L G S P LPG P LPG P S ++
Sbjct: 800 DMPGPKGDK---GSQGLPGLTGQSGLPGLPGQQGTPGLPGFPGSKGEMGVMGTPGQPGPP 856
Query: 147 -----------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
G P GP P G LPG + D S G
Sbjct: 857 GPVGTPGLPGEKGDHGFPGSSGPRGDPGYKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQ 916
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA- 251
GP+ G P +PG + P PGP P L G AP LPGP +
Sbjct: 917 GEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLGGTPGAPGLPGPKGSV 976
Query: 252 -----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
P PG P +PGP P LPG G + P +
Sbjct: 977 GGMGLPGTPGEKGVPGIPGPQGVPGLPGEKGTKGEKGQAGQPGV 1020
>gi|331284120|ref|NP_001193562.1| proteoglycan 4 precursor [Bos taurus]
Length = 1195
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 114/223 (51%), Gaps = 17/223 (7%)
Query: 62 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 121
+P P P+S P P P+S P P P++ P P P+ P P P+ P P P+S+ + P
Sbjct: 441 SPKEPAPTS-PKEPAPTS-PKEPAPTTTPKEPAPTD-PKEPAPAE-PKEPAPTSSKE-PA 495
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
P++ P P++ P P P+ P P P+ P P P+S P P P++ P P+ P
Sbjct: 496 PTTTTKEPAPTTTPKEPAPTD-PKEPAPAE-PKEPAPTS-PKEPAPTTTTKEPAPAE-PK 551
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
P P+S P P P++ P P+ P P P+S P P P++ P P++ P P P+
Sbjct: 552 EPAPTS-PKEPAPTTTTKEPAPAE-PKEPAPTS-PKEPAPTTTTKEPAPTTTPKEPAPTD 608
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
P P P+ P P P+ P P P+S P+ PSS PD+P P
Sbjct: 609 -PKEPAPAE-PKEPAPAE-PKEPTPNS-PETLAPSS-PDIPAP 646
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 111/221 (50%), Gaps = 22/221 (9%)
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+P P P+S P P P+S P P P++ P P P+ P P P+ P P P+S+ + P
Sbjct: 441 SPKEPAPTS-PKEPAPTS-PKEPAPTTTPKEPAPTD-PKEPAPAE-PKEPAPTSSKE-PA 495
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
P++ P P++ P P P+ P P P+ P P P+S P P P++ P P+ P
Sbjct: 496 PTTTTKEPAPTTTPKEPAPTD-PKEPAPAE-PKEPAPTS-PKEPAPTTTTKEPAPAE-PK 551
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 258
P P+S P P P++ P P+ P P P+S P P P++ P P++ P P P+
Sbjct: 552 EPAPTS-PKEPAPTTTTKEPAPAE-PKEPAPTS-PKEPAPTTTTKEPAPTTTPKEPAPTD 608
Query: 259 ------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
+ P P P+ P P P+S P+ PSS PD+P P
Sbjct: 609 PKEPAPAEPKEPAPAE-PKEPTPNS-PETLAPSS-PDIPAP 646
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 92/180 (51%), Gaps = 13/180 (7%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P EP P P+S+ + P P++ P P++ P P P+ P P P+ P P P+S P
Sbjct: 480 PAEPKEPAPTSSKE-PAPTTTTKEPAPTTTPKEPAPTD-PKEPAPAE-PKEPAPTS-PKE 535
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
P P++ P P+ P P P+S P P P++ P P+ P P P+S P P P++
Sbjct: 536 PAPTTTTKEPAPAE-PKEPAPTS-PKEPAPTTTTKEPAPAE-PKEPAPTS-PKEPAPTTT 591
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
P P++ P P P+ P P P+ P P P+ P P P+S P+ PSS PD+P P
Sbjct: 592 TKEPAPTTTPKEPAPTD-PKEPAPAE-PKEPAPAE-PKEPTPNS-PETLAPSS-PDIPAP 646
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 25/244 (10%)
Query: 61 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
+ P P P++ P P P++ P P++ P P++ P P+ P P P++ +
Sbjct: 367 TTPKEPAPTTTPKEPAPTT--KEPEPTT--KEPAPTTTTKEPAPT-IPKEPAPTTPKE-- 419
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
P+ + ++P P P+S P P P+S P P P++ P P P+ P
Sbjct: 420 -PAPTTHKEPTPTTTPKEPAPTSPKEPAPTS-PKEPAPTS-PKEPAPTTTPKEPAPTD-P 475
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-------SAPDLPGPSSA 233
P P+ P P P+S+ + P P++ P P++ P P P+ + P P P+S
Sbjct: 476 KEPAPAE-PKEPAPTSSKE-PAPTTTTKEPAPTTTPKEPAPTDPKEPAPAEPKEPAPTS- 532
Query: 234 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
P P P++ P P+ P P P+S P P P++ P P+ P P P+S P P P
Sbjct: 533 PKEPAPTTTTKEPAPAE-PKEPAPTS-PKEPAPTTTTKEPAPAE-PKEPAPTS-PKEPAP 588
Query: 294 SSTV 297
++T
Sbjct: 589 TTTT 592
>gi|432949424|ref|XP_004084203.1| PREDICTED: collagen alpha-1(X) chain-like, partial [Oryzias
latipes]
Length = 479
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 97/255 (38%), Gaps = 15/255 (5%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 84
P GP+ A GPS P P G S AP PG +PG +P GP
Sbjct: 1 PGAQGPTGATGPMGPSGMPGKPGIGKSGAPGYPGEPGKTGMPGRDGSPGPMGPPGMKGHT 60
Query: 85 GP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-----GPSSAPDLPGPSSAPDL 137
GP AP PG + P +PGP GP+ P P G + P +PG P
Sbjct: 61 GPPGIGAPGKPGQNGTPGMPGPMGPKGPQGPAGQPGSPGMPGVGKTGEPGIPGSRGQPGT 120
Query: 138 PGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
PG + PGP + P PGP G PGP G AP G
Sbjct: 121 PGTTGQKGEPGPTGFTGHPGAPGPIGPAGPQGARGFQGEPGPVGPKGDTGMVGAPGPRGS 180
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 251
G + P +PG P +PG + A G P LPG + AP L G +
Sbjct: 181 KGEQGAQGFTGKPGMPGAVGPPGIPGHNGAQGPKGSQGHQGVPGLPGSNGAPGLKGHTGP 240
Query: 252 PDLPGPSSAPDLPGP 266
P PG S P PGP
Sbjct: 241 PGAPGKSGEPGRPGP 255
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 56/148 (37%), Gaps = 6/148 (4%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
EP +PG P PG + PGP+ P PGP G PGP
Sbjct: 108 EPGIPGSRGQPGTPGTTGQKGEPGPTGFTGHPGAPGPIGPAGPQGARGFQGEPGPVGPKG 167
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPG 139
G AP G G + P +PG P +PG + A G P LPG
Sbjct: 168 DTGMVGAPGPRGSKGEQGAQGFTGKPGMPGAVGPPGIPGHNGAQGPKGSQGHQGVPGLPG 227
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 167
+ AP L G + P PG S P PGP
Sbjct: 228 SNGAPGLKGHTGPPGAPGKSGEPGRPGP 255
>gi|375300302|gb|AFA46584.1| collagen alpha-1 IV chain precursor-like protein, partial
[Armillifer agkistrodontis]
Length = 348
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 103/275 (37%), Gaps = 16/275 (5%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E PG P GP P PG PG S P G S DL P +
Sbjct: 15 EKGFPGLPGKPGSVGPQGMPGAPGEKGERGFPGLSGVPGEKG--STGDLGPPGQPGPMGP 72
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
S+ LPGP L G P +PG P GPS LPGP P PG P
Sbjct: 73 QGSS-GLPGPKGEQGLKGEPGFPGIPG---IPGERGPSGLRGLPGPKGYPGRPGLEGIPG 128
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
PG P L G G + +P LPG P +PG S P G + P LPG
Sbjct: 129 NPGLDGLPGLKGERGEA---GETGSPGLPGLIGQPGIPG-SEGPK--GDTGLPGLPGQPG 182
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPD 262
LPG L GP PG +S G P L PG S +P LPG P
Sbjct: 183 YLGLPGEKGDKGLIGPKGERGFPGLTSQKGQKGEPGYPGLQGQPGDSGSPGLPGLKGEPG 242
Query: 263 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
LPG P PG P +PG LPG +
Sbjct: 243 LPG-FGIPGSPGEQGEPGIPGTPGLDGLPGEKGEI 276
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 90/231 (38%), Gaps = 13/231 (5%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
LPGP L G P +PG P GPS LPGP P PG P PG
Sbjct: 78 LPGPKGEQGLKGEPGFPGIPG---IPGERGPSGLRGLPGPKGYPGRPGLEGIPGNPGLDG 134
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
P L G G + +P LPG P +PG S P G + P LPG LPG
Sbjct: 135 LPGLKGERGEA---GETGSPGLPGLIGQPGIPG-SEGPK--GDTGLPGLPGQPGYLGLPG 188
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSS 232
L GP PG +S G P L PG S +P LPG P LPG
Sbjct: 189 EKGDKGLIGPKGERGFPGLTSQKGQKGEPGYPGLQGQPGDSGSPGLPGLKGEPGLPG-FG 247
Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
P PG P +PG LPG PG + G + A +PG
Sbjct: 248 IPGSPGEQGEPGIPGTPGLDGLPGEKGEIGFPGIAGIKGDRGETGAFGIPG 298
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 89/228 (39%), Gaps = 16/228 (7%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPGP L G P +PG P GPS LPGP P PG P PG
Sbjct: 78 LPGPKGEQGLKGEPGFPGIPG---IPGERGPSGLRGLPGPKGYPGRPGLEGIPGNPGLDG 134
Query: 89 APDLPGP------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
P L G + +P LPG P +PG S P G + P LPG LPG
Sbjct: 135 LPGLKGERGEAGETGSPGLPGLIGQPGIPG-SEGPK--GDTGLPGLPGQPGYLGLPGEKG 191
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPD 199
L GP PG +S G P L PG S +P LPG P LPG P
Sbjct: 192 DKGLIGPKGERGFPGLTSQKGQKGEPGYPGLQGQPGDSGSPGLPGLKGEPGLPG-FGIPG 250
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
PG P +PG LPG PG + G + A +PG
Sbjct: 251 SPGEQGEPGIPGTPGLDGLPGEKGEIGFPGIAGIKGDRGETGAFGIPG 298
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 88/225 (39%), Gaps = 15/225 (6%)
Query: 16 LPSTVTERPL--EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 73
LP E+ L EP PG P GPS LPGP P PG P PG P
Sbjct: 78 LPGPKGEQGLKGEPGFPGIPGIPGERGPSGLRGLPGPKGYPGRPGLEGIPGNPGLDGLPG 137
Query: 74 LPGP------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 127
L G + +P LPG P +PG S P G + P LPG LPG
Sbjct: 138 LKGERGEAGETGSPGLPGLIGQPGIPG-SEGPK--GDTGLPGLPGQPGYLGLPGEKGDKG 194
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
L GP PG +S G P L PG S +P LPG P LPG P PG
Sbjct: 195 LIGPKGERGFPGLTSQKGQKGEPGYPGLQGQPGDSGSPGLPGLKGEPGLPG-FGIPGSPG 253
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
P +PG LPG PG + G + A +PG
Sbjct: 254 EQGEPGIPGTPGLDGLPGEKGEIGFPGIAGIKGDRGETGAFGIPG 298
>gi|291393227|ref|XP_002712997.1| PREDICTED: alpha 2 type IV collagen [Oryctolagus cuniculus]
Length = 1878
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 86/244 (35%), Gaps = 22/244 (9%)
Query: 49 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAP---DLP 102
GP LPG PGP G A LPGP P LPGP+ AP LP
Sbjct: 876 GPPGLKGLPGDPGREGFPGPPGFVGPRGSKGATGLPGPDGRPGPVGLPGPAGAPGDRGLP 935
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
G PGP LPG LPG P G P +PG LPGPS
Sbjct: 936 GEVLGAQ-PGPRGDAGLPGQPGLKGLPGERGPPGFTGSQGMPGMPGLKGQLGLPGPSGQQ 994
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLP 219
L GP PG P PGP+ LPG LPG P +PGP L
Sbjct: 995 GLQGP------PGQHGFPGAPGPAGPLGLPGAPGLEGLPGDRGEPGDTGVPGPVGMKGLS 1048
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 279
G G P PG G S P PGP PG + G P
Sbjct: 1049 GDRGDAGFSGERGQPGNPG------FKGMSGMPGTPGPKGERGSPGMDGFQGMLGLKGRP 1102
Query: 280 DLPG 283
LPG
Sbjct: 1103 GLPG 1106
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 86/244 (35%), Gaps = 25/244 (10%)
Query: 40 GPSSAPDLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 93
G A LPGP P LPGP+ AP LPG PGP LPG LP
Sbjct: 903 GSKGATGLPGPDGRPGPVGLPGPAGAPGDRGLPGEVLGAQ-PGPRGDAGLPGQPGLKGLP 961
Query: 94 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 153
G P G P +PG LPGPS L GP PG P PGP+
Sbjct: 962 GERGPPGFTGSQGMPGMPGLKGQLGLPGPSGQQGLQGP------PGQHGFPGAPGPAGPL 1015
Query: 154 DLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
LPG LPG P +PGP L G G P PG
Sbjct: 1016 GLPGAPGLEGLPGDRGEPGDTGVPGPVGMKGLSGDRGDAGFSGERGQPGNPG------FK 1069
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
G S P PGP PG + G P LPG G P L G + P
Sbjct: 1070 GMSGMPGTPGPKGERGSPGMDGFQGMLGLKGRPGLPGTKGEAGFFG---IPGLKGLAGEP 1126
Query: 271 DLPG 274
+ G
Sbjct: 1127 GVKG 1130
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 69/203 (33%), Gaps = 18/203 (8%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PGP LPG LPG P G P +PG LPGPS L GP
Sbjct: 943 PGPRGDAGLPGQPGLKGLPGERGPPGFTGSQGMPGMPGLKGQLGLPGPSGQQGLQGP--- 999
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDL 146
PG P PGP+ LPG LPG P +PGP L G
Sbjct: 1000 ---PGQHGFPGAPGPAGPLGLPGAPGLEGLPGDRGEPGDTGVPGPVGMKGLSGDRGDAGF 1056
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
G P PG G S P PGP PG + G P LPG
Sbjct: 1057 SGERGQPGNPG------FKGMSGMPGTPGPKGERGSPGMDGFQGMLGLKGRPGLPGTKGE 1110
Query: 207 PDLPGPSSAPDLPGPSSAPDLPG 229
G P L G + P + G
Sbjct: 1111 AGFFG---IPGLKGLAGEPGVKG 1130
>gi|241669409|ref|XP_002399630.1| glycine rich secreted cement protein, putative [Ixodes scapularis]
gi|215506175|gb|EEC15669.1| glycine rich secreted cement protein, putative [Ixodes scapularis]
Length = 1711
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 92/274 (33%), Gaps = 20/274 (7%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P E G S P G P LPG AP PG P PG L G
Sbjct: 1047 PGEKGSEGLSGFPGAKGDRGYPGLPG---APGQPGRDGEPGFPG------LKGKDGNDGF 1097
Query: 84 PGPSSAPDLPGPSSAPDLPGPSS--AP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
PG G AP LPGP P PG L G P LPG G
Sbjct: 1098 PGAKGDRGNDGYPGAPGLPGPVGPVGPAGFPGLDGIRGLKGDRGYPGLPGEKGEKGFKGD 1157
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
P PG G P LPG PG AP L G PG AP L
Sbjct: 1158 EGTPGFPGVPGEKGTRGYDGTPGLPGEKGDRGFPG---APGLNGLDGERGFPGEPGAPGL 1214
Query: 201 PGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
GP G PG P LPG LPG PG SSA D+PGP
Sbjct: 1215 QGPPGRGGVGANGEKGDRGRPGADGFPGLPGLKGDAGLPGFPGERGPPGESSAGDMPGPK 1274
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
PG AP LPG P G P LPG
Sbjct: 1275 GDRGFPG---APGLPGRDGYPGPKGLDGFPGLPG 1305
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 74/217 (34%), Gaps = 16/217 (7%)
Query: 14 DYLPSTVTER-----PLEPDLPGPSS--AP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 65
D P +R P P LPGP P PG L G P LPG
Sbjct: 1095 DGFPGAKGDRGNDGYPGAPGLPGPVGPVGPAGFPGLDGIRGLKGDRGYPGLPGEKGEKGF 1154
Query: 66 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
G P PG G P LPG PG AP L G PG A
Sbjct: 1155 KGDEGTPGFPGVPGEKGTRGYDGTPGLPGEKGDRGFPG---APGLNGLDGERGFPGEPGA 1211
Query: 126 PDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
P L GP G PG P LPG LPG PG SSA D+P
Sbjct: 1212 PGLQGPPGRGGVGANGEKGDRGRPGADGFPGLPGLKGDAGLPGFPGERGPPGESSAGDMP 1271
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
GP PG AP LPG P G P LPG
Sbjct: 1272 GPKGDRGFPG---APGLPGRDGYPGPKGLDGFPGLPG 1305
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 92/307 (29%), Gaps = 47/307 (15%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSA--------------------------------- 53
P LPG P LPG LPG ++
Sbjct: 981 PGLPGVKGEPGLPGAPGEKGLPGFAAEKGERGFPGLPGPRGPPGQPGAPGLPGDKGDDGR 1040
Query: 54 ---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 110
P PG + L S P G P LPG P G P L G
Sbjct: 1041 DGFPGTPGEKGSEGL---SGFPGAKGDRGYPGLPGAPGQPGRDGEPGFPGLKGKDGNDGF 1097
Query: 111 PGPSSAPDLPGPSSAPDLPGPSS--AP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 167
PG G AP LPGP P PG L G P LPG G
Sbjct: 1098 PGAKGDRGNDGYPGAPGLPGPVGPVGPAGFPGLDGIRGLKGDRGYPGLPGEKGEKGFKGD 1157
Query: 168 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 227
P PG G P LPG PG AP L G PG AP L
Sbjct: 1158 EGTPGFPGVPGEKGTRGYDGTPGLPGEKGDRGFPG---APGLNGLDGERGFPGEPGAPGL 1214
Query: 228 PGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
GP G PG P LPG LPG PG SSA D+PGP
Sbjct: 1215 QGPPGRGGVGANGEKGDRGRPGADGFPGLPGLKGDAGLPGFPGERGPPGESSAGDMPGPK 1274
Query: 286 SAPDLPG 292
PG
Sbjct: 1275 GDRGFPG 1281
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 98/326 (30%), Gaps = 49/326 (15%)
Query: 13 ADYLPSTVTERPLE--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-------- 62
+D P E+ P PG P LPG P LPG LPG ++
Sbjct: 956 SDGFPGAAGEKGDAGFPGAPGFDGPPGLPGVKGEPGLPGAPGEKGLPGFAAEKGERGFPG 1015
Query: 63 ----------------------------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 94
P PG + L S P G P LPG
Sbjct: 1016 LPGPRGPPGQPGAPGLPGDKGDDGRDGFPGTPGEKGSEGL---SGFPGAKGDRGYPGLPG 1072
Query: 95 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--AP-DLPGPSS 151
P G P L G PG G AP LPGP P PG
Sbjct: 1073 APGQPGRDGEPGFPGLKGKDGNDGFPGAKGDRGNDGYPGAPGLPGPVGPVGPAGFPGLDG 1132
Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
L G P LPG G P PG G P LPG PG
Sbjct: 1133 IRGLKGDRGYPGLPGEKGEKGFKGDEGTPGFPGVPGEKGTRGYDGTPGLPGEKGDRGFPG 1192
Query: 212 PSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
AP L G PG AP L GP G PG P LPG
Sbjct: 1193 ---APGLNGLDGERGFPGEPGAPGLQGPPGRGGVGANGEKGDRGRPGADGFPGLPGLKGD 1249
Query: 270 PDLPGPSSAPDLPGPSSAPDLPGPSS 295
LPG PG SSA D+PGP
Sbjct: 1250 AGLPGFPGERGPPGESSAGDMPGPKG 1275
>gi|380016704|ref|XP_003692315.1| PREDICTED: collagen alpha-2(IV) chain-like [Apis florea]
Length = 918
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 107/308 (34%), Gaps = 52/308 (16%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---------------------APDLPGPSSAPD 64
E PG + +P + G S P PG AP + G
Sbjct: 418 EKGYPGQNGSPGIEGKSGLPGFPGLKGEMGFPGIPGPQGLPGPPGEIGAPGIQGAKGEAG 477
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
PG P S P LPGP +P +PG LPG P L GP P LPG
Sbjct: 478 EPGRDGLPGSIVGSIVPGLPGPQGSPGIPGEDG---LPGIKGEPGLIGP---PGLPGLQG 531
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
PG P L G S P PGP + GP P LPG P G G
Sbjct: 532 KNGPPGSPGPPGLQGLSGEPGSPGPQG---IDGPIGKPGLPGRDGQPGNKGDKGQQGEQG 588
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDL----------------PGPSSAPDLPGPSSAPDL- 227
LPG AP LPG + P L P + D+ ++ +
Sbjct: 589 SVGPRGLPGSIGAPGLPGIAGIPGLDGRSGLPGPPGPPGPPGSPGTTTDMLSTNNVLETI 648
Query: 228 --PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
PG S LPG P GPS G P +PG +P L GP P + G +
Sbjct: 649 GNPGVSGPRGLPGAPGLPGERGPSGERGPEGKIGLPGMPGKDGSPGLQGP---PGIRGQT 705
Query: 286 SAPDLPGP 293
P + GP
Sbjct: 706 GIPGVQGP 713
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 86/243 (35%), Gaps = 12/243 (4%)
Query: 42 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 101
S LP P P G G G + PG + +P + G S P
Sbjct: 380 SRFTGLPDPQGYPGQNGSKGEKGNRGDKGEQGQKGEAGEKGYPGQNGSPGIEGKSGLPGF 439
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGP 158
PG PG LPGP PG A G LPG S P LPGP
Sbjct: 440 PGLKGEMGFPGIPGPQGLPGPPGEIGAPGIQGAKGEAGEPGRDGLPGSIVGSIVPGLPGP 499
Query: 159 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
+P +PG LPG P L GP P LPG PG P L G S P
Sbjct: 500 QGSPGIPGEDG---LPGIKGEPGLIGP---PGLPGLQGKNGPPGSPGPPGLQGLSGEPGS 553
Query: 219 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 278
PGP + GP P LPG P G G LPG AP LPG +
Sbjct: 554 PGPQG---IDGPIGKPGLPGRDGQPGNKGDKGQQGEQGSVGPRGLPGSIGAPGLPGIAGI 610
Query: 279 PDL 281
P L
Sbjct: 611 PGL 613
>gi|410056847|ref|XP_521216.4| PREDICTED: collagen alpha-6(IV) chain [Pan troglodytes]
Length = 1630
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 87/248 (35%), Gaps = 12/248 (4%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
+ V+ +P P G P L G S PG G +P LPG S P L
Sbjct: 948 IIKGVSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLK 1007
Query: 76 GPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
G + PGP P G G PG G S LPG
Sbjct: 1008 GDNGQTVEISSSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGA 1067
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1068 PGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGT 1127
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
PGPS +PGP+ LPGP PG AP PG G P L GP+
Sbjct: 1128 PGPSIT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAG 1180
Query: 251 APDLPGPS 258
P PG S
Sbjct: 1181 LPGAPGIS 1188
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 107/296 (36%), Gaps = 35/296 (11%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 600 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGTKGEPGSPGLVHLPELPGFPGPR 656
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 657 GEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 710
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
G S P L G P L GP +P PG P PG S + G S P
Sbjct: 711 HKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLP- 769
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 770 -----GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPG------LVGLKG 818
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+P PG + P L GP G P +PG P +PG +PG + +
Sbjct: 819 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGKM 871
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 105/293 (35%), Gaps = 41/293 (13%)
Query: 29 LPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPD 82
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 571 LPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQPG 630
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 631 SSGTKGEPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMIG 678
Query: 143 APDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-- 195
+P LPG A D+ G + L G + G S P L G P L GP
Sbjct: 679 SPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGE 738
Query: 196 -SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDL---------PGPSSA 242
+P PG P PG S + G S AP PG S P PG
Sbjct: 739 RGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSIVK 798
Query: 243 PDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P L G +P PG + P L GP G P +PG
Sbjct: 799 KGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG 851
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 70/193 (36%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG LPG + + G P +PG S + + G +P LPG S
Sbjct: 949 IKGVSGKPGPPGFMGIRGLPGLKGSSGITG---FPGMPGESGSQGIRG---SPGLPGASG 1002
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P L G + PGP P G G PG G S
Sbjct: 1003 LPGLKGDNGQTVEISSSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDV 1062
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
LPG P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1063 GLPGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTK 1122
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1123 GTHGTPGPSITGV 1135
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 96/270 (35%), Gaps = 32/270 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----P 81
P PGP LPG P LPG LPG +P LPG A D+ G +
Sbjct: 650 PGFPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQ 703
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLP 138
L G + G S P L G P L GP +P PG P PG S +
Sbjct: 704 GLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIK 763
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G S P AP PG S P G PG LPG P PG
Sbjct: 764 GKSGLP------GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPG----- 812
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
L G +P PG + P L GP G P +PG P +PG +PG +
Sbjct: 813 -LVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGST 868
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
GPS PG PGP P
Sbjct: 869 GK---MGPSGRAGTPGEKGDRGNPGPVGIP 895
>gi|29549|emb|CAA68698.1| unnamed protein product [Homo sapiens]
Length = 1212
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 114/307 (37%), Gaps = 41/307 (13%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPS 69
A LP + L P LPG AP +PG P S ++ G P PGP AP LPG
Sbjct: 802 AQGLPGITGQSGL-PGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPWGAPGLPGEK 860
Query: 70 SAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLP---------------------GPS 105
PG P P L G LPG + D G
Sbjct: 861 GDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEK 920
Query: 106 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPS 159
+ PG P G + P PGP P + G AP LPGP + P PG
Sbjct: 921 GSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEK 980
Query: 160 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
P +PGP +P LPG A G + P + P L G + G +P
Sbjct: 981 GVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGIAGFPGSPGEK 1036
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 279
G + +PG +P L G + PG +P LPG LPG P + G + P
Sbjct: 1037 GEKGSIGIPGMPGSPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLP 1093
Query: 280 DLPGPSS 286
PGP+
Sbjct: 1094 GTPGPTG 1100
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 106/282 (37%), Gaps = 25/282 (8%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLP 84
D+PGP G P + G S P LPG AP +PG P S ++ G P P
Sbjct: 792 DMPGPKGDK---GAQGLPGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSP 848
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
GP AP LPG PG S GP P L G LPG + D S
Sbjct: 849 GPWGAPGLPGEKGDHGFPGSS------GPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMK 902
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLP 201
G GP G P +PG + P PGP P + G AP LP
Sbjct: 903 GQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLP 962
Query: 202 GPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
GP + P PG P +PGP +P LPG A G + P + P L
Sbjct: 963 GPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLR 1018
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
G + G +P G + +PG +P L G +V
Sbjct: 1019 GEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSV 1060
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 94/247 (38%), Gaps = 24/247 (9%)
Query: 57 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 110
PG P G + P PGP P + G AP LPGP + P PG P +
Sbjct: 926 PGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 985
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
PGP +P LPG A G + P + P L G + G +P G +
Sbjct: 986 PGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGIAGFPGSPGEKGEKGS 1041
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
+PG +P L G + PG +P LPG LPG P + G + P PGP
Sbjct: 1042 IGIPGMPGSPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGP 1098
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-----SAPDLPGPSSAPDLPGPS 285
+ GP+ PG P G P LPG A G PG +
Sbjct: 1099 T------GPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKGSKGEVGFPGLA 1152
Query: 286 SAPDLPG 292
+P +PG
Sbjct: 1153 GSPGIPG 1159
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 94/243 (38%), Gaps = 26/243 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PGP P + G AP LPGP LPG +PG +PGP +P
Sbjct: 940 QPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPG------IPGPQGSPG 993
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG A G + P + P L G + G +P G + +PG
Sbjct: 994 LPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPG 1049
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+P L G + PG +P LPG LPG P + G + P PGP+ G
Sbjct: 1050 SPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPT------G 1100
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P+ PG P G P LPG P PG A G PG + +P
Sbjct: 1101 PAGQKGEPGSDGIPGSAGEKGEPGLPG-RGFPGFPG---AKGDKGSKGEVGFPGLAGSPG 1156
Query: 263 LPG 265
+PG
Sbjct: 1157 IPG 1159
>gi|49117309|gb|AAH72650.1| Col4a1 protein [Mus musculus]
Length = 1562
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 116/328 (35%), Gaps = 50/328 (15%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 83
P L G S P LPG P +PG P S ++ G P PGP+ P LPG L
Sbjct: 851 PGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGTPGLPGEKGDHGL 910
Query: 84 PG---PSSAPDLPGPSS---APDLPGPSSAPDL--------------------------- 110
PG P P G P +PG D+
Sbjct: 911 PGSSGPRGDPGFKGDKGDVGLPGMPGSMEHVDMGSMKGQKGDQGEKGQIGPTGDKGSRGD 970
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
PG P G + P PGP P L G +P LPGP + P PG P +
Sbjct: 971 PGTPGVPGKDGQAGHPGQPGPKGDPGLSGTPGSPGLPGPKGSVGGMGLPGSPGEKGVPGI 1030
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PG P PG A G S P + P PG L G +P G +
Sbjct: 1031 PGSQGVPGSPGEKGAKGEKGQSGLPGI----GIPGRPGDKGDQGLAGFPGSPGEKGEKGS 1086
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
PG P PGP +P G +P LPG LPG P + G + P PGP
Sbjct: 1087 AGTPG---MPGSPGPRGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGTPGP 1143
Query: 285 SSAPDLPG-PSSTVLGSYLGEAGHQKSP 311
+ G P S + GE G Q P
Sbjct: 1144 TGPAGQKGEPGSDGIPGSAGEKGEQGVP 1171
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 110/324 (33%), Gaps = 71/324 (21%)
Query: 28 DLPGPSS------APDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPS 78
D+PGP P L G S P LPG P +PG P S ++ G P PGP+
Sbjct: 837 DMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPA 896
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
P LPG LPG S GP P G LPG +PG D+
Sbjct: 897 GTPGLPGEKGDHGLPGSS------GPRGDPGFKGDKGDVGLPG------MPGSMEHVDM- 943
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS 195
S G GP+ G P +PG + P PGP P L G
Sbjct: 944 --GSMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLSGTP 1001
Query: 196 SAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---- 245
+P LPGP + P PG P +PG P PG A G S P +
Sbjct: 1002 GSPGLPGPKGSVGGMGLPGSPGEKGVPGIPGSQGVPGSPGEKGAKGEKGQSGLPGIGIPG 1061
Query: 246 ----------------------------------PGPSSAPDLPGPSSAPDLPGPSSAPD 271
PGP +P G +P LPG
Sbjct: 1062 RPGDKGDQGLAGFPGSPGEKGEKGSAGTPGMPGSPGPRGSPGNIGHPGSPGLPGEKGDKG 1121
Query: 272 LPGPSSAPDLPGPSSAPDLPGPSS 295
LPG P + G + P PGP+
Sbjct: 1122 LPGLDGVPGVKGEAGLPGTPGPTG 1145
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 111/320 (34%), Gaps = 66/320 (20%)
Query: 34 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAP 90
+P PGP PG P +PG A PG P LPGP LPG +P
Sbjct: 655 GSPGFPGPQGDRGFPGTPGRPGIPGEKGAVGQPG-IGFPGLPGPKGVDGLPGEIGRPGSP 713
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
PG + P PGP PG LPG P LPG P G P +PG
Sbjct: 714 GRPGFNGLPGNPGPQGQKGEPGIG----LPGLKGQPGLPGIPGTPGEKGSIGGPGVPGEQ 769
Query: 151 SAPDLPGPSSAPDLPGP--------------------------------SSAPDLPGPSS 178
PG PGP S P + G
Sbjct: 770 GLTGPPGLQGIRGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGQGPPGSSGPPGIKGEKG 829
Query: 179 APDLPGPSSAPDLPGPS------SAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--G 229
P PG D+PGP P L G S P LPG P +PG P S ++ G
Sbjct: 830 FPGFPG----LDMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMG 885
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
P PGP+ P LPG LPG S GP P G LPG
Sbjct: 886 TPGQPGSPGPAGTPGLPGEKGDHGLPGSS------GPRGDPGFKGDKGDVGLPG------ 933
Query: 290 LPGPSSTV-LGSYLGEAGHQ 308
+PG V +GS G+ G Q
Sbjct: 934 MPGSMEHVDMGSMKGQKGDQ 953
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 114/337 (33%), Gaps = 65/337 (19%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 72
D LP + RP P PG + P PGP PG LPG P LPG P
Sbjct: 700 VDGLPGEIG-RPGSPGRPGFNGLPGNPGPQGQKGEPGIG----LPGLKGQPGLPGIPGTP 754
Query: 73 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---------------------------- 104
G P +PG PG PGP
Sbjct: 755 GEKGSIGGPGVPGEQGLTGPPGLQGIRGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGQG 814
Query: 105 ----SSAPDLPGPSSAPDLPGPSSAPDLPGPSS------APDLPGPSSAPDLPGPSSAPD 154
S P + G P PG D+PGP P L G S P LPG P
Sbjct: 815 PPGSSGPPGIKGEKGFPGFPGL----DMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPG 870
Query: 155 LPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPD 208
+PG P S ++ G P PGP+ P LPG LPG P P G
Sbjct: 871 VPGFPGSKGEMGVMGTPGQPGSPGPAGTPGLPGEKGDHGLPGSSGPRGDPGFKGDKGDVG 930
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-- 266
LPG +PG D+ S G GP+ G P +PG
Sbjct: 931 LPG------MPGSMEHVDM---GSMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDG 981
Query: 267 -SSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL 302
+ P PGP P L G +P LPGP +V G L
Sbjct: 982 QAGHPGQPGPKGDPGLSGTPGSPGLPGPKGSVGGMGL 1018
>gi|194209578|ref|XP_001915278.1| PREDICTED: protein piccolo-like [Equus caballus]
Length = 5117
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 102/246 (41%), Positives = 127/246 (51%), Gaps = 31/246 (12%)
Query: 66 PGPSS-APDLPGPSSAPDLP-GPSS------APDLPG--PSS---APDLPGPSSAPDLPG 112
PGP+ + PGP+ AP P GP+ A LP P++ A P P S PG
Sbjct: 281 PGPAKPSTQQPGPTKAPAQPPGPAKPSPTQPAAKLPAQPPATTKPATQQPRPKSPAQPPG 340
Query: 113 PSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSS-APDLPGPSS-APDLPGPSS-APDLPG 166
P+ +P PGP+ A PGP+ P PGP+ AP PGP+ P PGP+ A PG
Sbjct: 341 PAKSPAQQPGPAKAASQQPGPAKPPPQQPGPAKPAPQQPGPAKPPPQQPGPAKPASQQPG 400
Query: 167 PSS-APDLPGPSSA-PDLPGPSS-APDLPGPSSA-PDLPGPSSA-PDLPGPSS-APDLPG 220
P+ P PGP+ A P PGP+ P+ PGP A P PGP+ A P PGP+ AP PG
Sbjct: 401 PAKPPPQQPGPAKAPPQQPGPAKPPPEQPGPVKAPPQQPGPAKAPPQQPGPAKPAPQQPG 460
Query: 221 PSS-APDLPGPSS-APDLPGPSSA-PDLPGPSS-APDLPGPSS-APDLPGPSS-APDLPG 274
P+ P PGP+ P PGP A P PGP+ P PGP+ AP PGP+ P PG
Sbjct: 461 PAKPPPQQPGPAKPPPQQPGPVKAPPQQPGPAKPPPQQPGPAKPAPQQPGPAKPTPQQPG 520
Query: 275 PSSAPD 280
P+ D
Sbjct: 521 PAKVSD 526
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 126/244 (51%), Gaps = 31/244 (12%)
Query: 84 PGPSS-APDLPGPSSAPDLP-GPSS------APDLPG--PSS---APDLPGPSSAPDLPG 130
PGP+ + PGP+ AP P GP+ A LP P++ A P P S PG
Sbjct: 281 PGPAKPSTQQPGPTKAPAQPPGPAKPSPTQPAAKLPAQPPATTKPATQQPRPKSPAQPPG 340
Query: 131 PSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSS-APDLPGPSSAP-DLPGPSS-APDLPG 184
P+ +P PGP+ A PGP+ P PGP+ AP PGP+ P PGP+ A PG
Sbjct: 341 PAKSPAQQPGPAKAASQQPGPAKPPPQQPGPAKPAPQQPGPAKPPPQQPGPAKPASQQPG 400
Query: 185 PSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSS-APDLPG 238
P+ P PGP+ AP PGP+ P + PGP AP PGP+ AP PGP+ AP PG
Sbjct: 401 PAKPPPQQPGPAKAPPQQPGPAKPPPEQPGPVKAPPQQPGPAKAPPQQPGPAKPAPQQPG 460
Query: 239 PSS-APDLPGPSS-APDLPGPSSA-PDLPGPSS-APDLPGPSS-APDLPGPSS-APDLPG 292
P+ P PGP+ P PGP A P PGP+ P PGP+ AP PGP+ P PG
Sbjct: 461 PAKPPPQQPGPAKPPPQQPGPVKAPPQQPGPAKPPPQQPGPAKPAPQQPGPAKPTPQQPG 520
Query: 293 PSST 296
P+
Sbjct: 521 PAKV 524
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 27 PDLPGPSS-APDLPGPSS-APDLPGPSS-APDLPGPSS-APDLPGPSSA-PDLPGPSS-A 80
P PGP+ AP PGP+ P PGP+ A PGP+ P PGP+ A P PGP+
Sbjct: 366 PQQPGPAKPAPQQPGPAKPPPQQPGPAKPASQQPGPAKPPPQQPGPAKAPPQQPGPAKPP 425
Query: 81 PDLPGPSSA-PDLPGPSSA-PDLPGPSS-APDLPGPSS-APDLPGPSS-APDLPGPSSA- 134
P+ PGP A P PGP+ A P PGP+ AP PGP+ P PGP+ P PGP A
Sbjct: 426 PEQPGPVKAPPQQPGPAKAPPQQPGPAKPAPQQPGPAKPPPQQPGPAKPPPQQPGPVKAP 485
Query: 135 PDLPGPSS-APDLPGPSS-APDLPGPSS-APDLPGPSSAPD 172
P PGP+ P PGP+ AP PGP+ P PGP+ D
Sbjct: 486 PQQPGPAKPPPQQPGPAKPAPQQPGPAKPTPQQPGPAKVSD 526
>gi|1674440|gb|AAB19038.1| collagen type IV a6 chain [Homo sapiens]
Length = 1691
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 87/248 (35%), Gaps = 12/248 (4%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
+ V+ +P P G P L G S PG G +P LPG S P L
Sbjct: 1009 IIKGVSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLK 1068
Query: 76 GPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
G + PGP P G G PG G S LPG
Sbjct: 1069 GDNGQTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGKKGEDGKVGVSGDVGLPGA 1128
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1129 PGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGT 1188
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
PGPS +PGP+ LPGP PG AP PG G P L GP+
Sbjct: 1189 PGPSIT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAG 1241
Query: 251 APDLPGPS 258
P PG S
Sbjct: 1242 LPGAPGIS 1249
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 97/307 (31%), Positives = 109/307 (35%), Gaps = 41/307 (13%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 661 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPR 717
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 718 GEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 771
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPS---S 178
G S P L G P L GP +P PG P PG S + G S
Sbjct: 772 HKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPG 831
Query: 179 APDLPGPSSAPDL---------PGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPD 226
AP PG S P PG LPG P L G +P PG + P
Sbjct: 832 APGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPA 891
Query: 227 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
L GP G P +PG LPG S L G + GPS PG
Sbjct: 892 LSGPKGEKGSVGFVGFPGIPG------LPGISGTRGLKGIPGSTGKMGPSGRAGTPGEKG 945
Query: 287 APDLPGP 293
PGP
Sbjct: 946 DRGNPGP 952
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 105/294 (35%), Gaps = 41/294 (13%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAP 81
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 631 GLPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQP 690
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 691 GSSGSKGEPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMI 738
Query: 142 SAPDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 195
+P LPG A D+ G + L G + G S P L G P L GP
Sbjct: 739 GSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKG 798
Query: 196 --SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDL---------PGPSS 241
+P PG P PG S + G S AP PG S P PG
Sbjct: 799 ERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSIV 858
Query: 242 APDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P L G +P PG + P L GP G P +PG
Sbjct: 859 KKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG 912
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 100/277 (36%), Gaps = 32/277 (11%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EP PG P+LPG PGP LPG P LPG LPG +P LPG
Sbjct: 698 EPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPG 745
Query: 86 PSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDL 137
A D+ G + L G + G S P L G P L GP +P
Sbjct: 746 SKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGT 805
Query: 138 PGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
PG P PG S + G S AP PG S P G PG LPG
Sbjct: 806 PGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGL 865
Query: 195 S---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
P L G +P PG + P L GP G P +PG LPG S
Sbjct: 866 KGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG------LPGISGT 919
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
L G + GPS PG PGP P
Sbjct: 920 RGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIP 956
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 70/193 (36%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG LPG + + G P +PG S + + G +P LPG S
Sbjct: 1010 IKGVSGKPGPPGFMGIRGLPGLKGSSGITG---FPGMPGESGSQGIRG---SPGLPGASG 1063
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P L G + PGP P G G PG G S
Sbjct: 1064 LPGLKGDNGQTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGKKGEDGKVGVSGDV 1123
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
LPG P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1124 GLPGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTK 1183
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1184 GTHGTPGPSITGV 1196
>gi|1674441|gb|AAB19039.1| collagen type IV a6 chain [Homo sapiens]
Length = 1690
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 87/248 (35%), Gaps = 12/248 (4%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
+ V+ +P P G P L G S PG G +P LPG S P L
Sbjct: 1008 IIKGVSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLK 1067
Query: 76 GPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
G + PGP P G G PG G S LPG
Sbjct: 1068 GDNGQTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGKKGEDGKVGVSGDVGLPGA 1127
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1128 PGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGT 1187
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
PGPS +PGP+ LPGP PG AP PG G P L GP+
Sbjct: 1188 PGPSIT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAG 1240
Query: 251 APDLPGPS 258
P PG S
Sbjct: 1241 LPGAPGIS 1248
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 97/307 (31%), Positives = 109/307 (35%), Gaps = 41/307 (13%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 660 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPR 716
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 717 GEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 770
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPS---S 178
G S P L G P L GP +P PG P PG S + G S
Sbjct: 771 HKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPG 830
Query: 179 APDLPGPSSAPDL---------PGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPD 226
AP PG S P PG LPG P L G +P PG + P
Sbjct: 831 APGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPA 890
Query: 227 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
L GP G P +PG LPG S L G + GPS PG
Sbjct: 891 LSGPKGEKGSVGFVGFPGIPG------LPGISGTRGLKGIPGSTGKMGPSGRAGTPGEKG 944
Query: 287 APDLPGP 293
PGP
Sbjct: 945 DRGNPGP 951
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 105/294 (35%), Gaps = 41/294 (13%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAP 81
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 630 GLPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQP 689
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 690 GSSGSKGEPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMI 737
Query: 142 SAPDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 195
+P LPG A D+ G + L G + G S P L G P L GP
Sbjct: 738 GSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKG 797
Query: 196 --SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDL---------PGPSS 241
+P PG P PG S + G S AP PG S P PG
Sbjct: 798 ERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSIV 857
Query: 242 APDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P L G +P PG + P L GP G P +PG
Sbjct: 858 KKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG 911
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 100/277 (36%), Gaps = 32/277 (11%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EP PG P+LPG PGP LPG P LPG LPG +P LPG
Sbjct: 697 EPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPG 744
Query: 86 PSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDL 137
A D+ G + L G + G S P L G P L GP +P
Sbjct: 745 SKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGT 804
Query: 138 PGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
PG P PG S + G S AP PG S P G PG LPG
Sbjct: 805 PGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGL 864
Query: 195 S---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
P L G +P PG + P L GP G P +PG LPG S
Sbjct: 865 KGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG------LPGISGT 918
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
L G + GPS PG PGP P
Sbjct: 919 RGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIP 955
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 70/193 (36%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG LPG + + G P +PG S + + G +P LPG S
Sbjct: 1009 IKGVSGKPGPPGFMGIRGLPGLKGSSGITG---FPGMPGESGSQGIRG---SPGLPGASG 1062
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P L G + PGP P G G PG G S
Sbjct: 1063 LPGLKGDNGQTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGKKGEDGKVGVSGDV 1122
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
LPG P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1123 GLPGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTK 1182
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1183 GTHGTPGPSITGV 1195
>gi|387542762|gb|AFJ72008.1| collagen alpha-2(IV) chain preproprotein [Macaca mulatta]
Length = 1712
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 103/301 (34%), Gaps = 25/301 (8%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PGP +PG LPG P G P +PG P LPGPS P L GP
Sbjct: 781 PGPRGDAGVPGQPGFKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLSGPPGQ 840
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
PG AP GP P +PG P G PGP + G L G
Sbjct: 841 HGFPG---APGQEGPLGLPGIPGLEGLPGDRGDPGDIGAPGPVGMKGVSGDRGDAGLAGE 897
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SA 206
P PG +PG P L G +P + G P L G P G +
Sbjct: 898 RGHPGSPGFKGIDGMPG---TPGLKGERGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGI 954
Query: 207 PDLPGPSSAPDLPGPSS--------------APDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
P L G + P G D+ G G G P
Sbjct: 955 PGLKGLAGEPGFKGSRGDPGPPGPPPIILPGMKDIKGEKGDEGPMGLKGYLGAKGIQGMP 1014
Query: 253 DLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSTVLGSYLGEAGHQKS 310
+PG S P LPG P + G AP +PG P + G P T ++G G + +
Sbjct: 1015 GIPGLSGIPGLPGRPGHIKGVKGDIGAPGIPGLPGFPGVAGPPGITGFPGFIGSRGDKGA 1074
Query: 311 P 311
P
Sbjct: 1075 P 1075
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 85/260 (32%), Gaps = 30/260 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-- 81
P +PG P LPGPS P L PG P PG LPG LPG P
Sbjct: 814 PGMPGLKGQPGLPGPSGQPGLSGPPGQHGFPGAPGQEGPLGLPGIPGLEGLPGDRGDPGD 873
Query: 82 -DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
PGP + G L G P PG +PG P L G +P + G
Sbjct: 874 IGAPGPVGMKGVSGDRGDAGLAGERGHPGSPGFKGIDGMPG---TPGLKGERGSPGMDGF 930
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS------------- 187
P L G P PG G P L G + P G
Sbjct: 931 QGMPGLKG---RPGFPGSKGEAGFFG---IPGLKGLAGEPGFKGSRGDPGPPGPPPIILP 984
Query: 188 -APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDL 245
D+ G G G P +PG S P LPG P + G AP +
Sbjct: 985 GMKDIKGEKGDEGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGHIKGVKGDIGAPGI 1044
Query: 246 PGPSSAPDLPGPSSAPDLPG 265
PG P + GP PG
Sbjct: 1045 PGLPGFPGVAGPPGITGFPG 1064
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 77/219 (35%), Gaps = 10/219 (4%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
PGP P GP + G PGP P GP LPG PGP
Sbjct: 730 FPGP---PGFIGPRGSKGAVGLPGPDGPPGPIGLPGPDGPPGDRGLPGEVLGAQ-PGPRG 785
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
+PG LPG P G P +PG P LPGPS P L GP PG
Sbjct: 786 DAGVPGQPGFKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLSGPPGQHGFPG 845
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
AP GP P +PG P G PGP + G L G P
Sbjct: 846 ---APGQEGPLGLPGIPGLEGLPGDRGDPGDIGAPGPVGMKGVSGDRGDAGLAGERGHPG 902
Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
PG +PG P L G +P + G P L G
Sbjct: 903 SPGFKGIDGMPG---TPGLKGERGSPGMDGFQGMPGLKG 938
>gi|198416097|ref|XP_002120982.1| PREDICTED: similar to collagen, type IV, alpha 1 [Ciona intestinalis]
Length = 1831
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 103/295 (34%), Gaps = 24/295 (8%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD-- 73
LP + P LPG P G P +PG LPG + LPGP
Sbjct: 1163 LPGQKGAKSTLPGLPGVDGLPGKDGLDGEPGMPGKDGQVGLPGRNG---LPGPKGGRGNS 1219
Query: 74 ----LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
PG S GP+ PG P + G P + G LPG LP
Sbjct: 1220 GLMGFPGESGEKGNTGPAGERGFPGQQGLPGIGGLEGLPGVQGEKGRTGLPGRQGLDGLP 1279
Query: 130 GPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
G + P +PGP LPG P G P LPGP P L G GPS
Sbjct: 1280 GEAGLPGDSVPGPVG---LPGRQGLPGEEGMIGLPGLPGPRGLPGLKGEMGFLGPEGPSG 1336
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 245
PGP A + G A GP+ GP P LPG PGP+ P
Sbjct: 1337 RQGQPGPRGA-TVKGEIGATGPSGPAGESGPTGPPGLPGLPGLLGKKGEPGPTGEPGFNG 1395
Query: 246 ----PGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
PG LPG + P L G P PG P PG P L GP
Sbjct: 1396 FEGKPGAKGQTGLPGSTGLPGLAGFAGEQGEPGFPGMKGRPGEPGAQGLPGLEGP 1450
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 101/333 (30%), Gaps = 62/333 (18%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--------LPGP 77
E PG P + G P + G LPG LPG + P LPG
Sbjct: 1239 ERGFPGQQGLPGIGGLEGLPGVQGEKGRTGLPGRQGLDGLPGEAGLPGDSVPGPVGLPGR 1298
Query: 78 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------------ 125
P G P LPGP P L G GPS PGP A
Sbjct: 1299 QGLPGEEGMIGLPGLPGPRGLPGLKGEMGFLGPEGPSGRQGQPGPRGATVKGEIGATGPS 1358
Query: 126 -----------------------PDLPGPSSAPDL------PGPSSAPDLPGPSSAPDLP 156
PGP+ P PG LPG + P L
Sbjct: 1359 GPAGESGPTGPPGLPGLPGLLGKKGEPGPTGEPGFNGFEGKPGAKGQTGLPGSTGLPGLA 1418
Query: 157 G---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGP 212
G P PG P PG P L GP P G L G + P G
Sbjct: 1419 GFAGEQGEPGFPGMKGRPGEPGAQGLPGLEGP---PGEKGERGTTGLRGEDAQPIFREGE 1475
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---A 269
PGP PG PG G P LPG + PGP A
Sbjct: 1476 KGESGSPGPVGPRGFPGQVGRQGTPGTRGQKGEIGQEGIPGLPGLAGDRGEPGPQGLVGA 1535
Query: 270 PDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL 302
LPG LPG + P PGPS+ G ++
Sbjct: 1536 QGLPGEDG---LPGANGLPGTPGPSALFHGYFV 1565
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 94/316 (29%), Gaps = 53/316 (16%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
PG S GP+ PG P + G P + G LPG LPG +
Sbjct: 1224 FPGESGEKGNTGPAGERGFPGQQGLPGIGGLEGLPGVQGEKGRTGLPGRQGLDGLPGEAG 1283
Query: 89 APD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
P +PGP LPG P G P LPGP P L G GPS
Sbjct: 1284 LPGDSVPGPVG---LPGRQGLPGEEGMIGLPGLPGPRGLPGLKGEMGFLGPEGPSGRQGQ 1340
Query: 147 PGPSSA-----------------------------------PDLPGPSSAPDL------P 165
PGP A PGP+ P P
Sbjct: 1341 PGPRGATVKGEIGATGPSGPAGESGPTGPPGLPGLPGLLGKKGEPGPTGEPGFNGFEGKP 1400
Query: 166 GPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 222
G LPG + P L G P PG P PG P L GP P G
Sbjct: 1401 GAKGQTGLPGSTGLPGLAGFAGEQGEPGFPGMKGRPGEPGAQGLPGLEGP---PGEKGER 1457
Query: 223 SAPDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
L G + P G PGP PG PG G P L
Sbjct: 1458 GTTGLRGEDAQPIFREGEKGESGSPGPVGPRGFPGQVGRQGTPGTRGQKGEIGQEGIPGL 1517
Query: 282 PGPSSAPDLPGPSSTV 297
PG + PGP V
Sbjct: 1518 PGLAGDRGEPGPQGLV 1533
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 56/150 (37%), Gaps = 13/150 (8%)
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
LPG P LPG A S+ P LPG P G P +PG LPG +
Sbjct: 1154 LPGSRGYPGLPGQKGAK-----STLPGLPGVDGLPGKDGLDGEPGMPGKDGQVGLPGRNG 1208
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
LPGP G S PG S GP+ PG P + G P + G
Sbjct: 1209 ---LPGPKGGR---GNSGLMGFPGESGEKGNTGPAGERGFPGQQGLPGIGGLEGLPGVQG 1262
Query: 266 PSSAPDLPGPSSAPDLPGPSSAPD--LPGP 293
LPG LPG + P +PGP
Sbjct: 1263 EKGRTGLPGRQGLDGLPGEAGLPGDSVPGP 1292
Score = 38.1 bits (87), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 102/331 (30%), Gaps = 63/331 (19%)
Query: 16 LPST-VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 74
LP T + E PG P L G + +P G + P L G + P GP+ L
Sbjct: 950 LPGTDIVGMKGEQGSPGSEGYPGLQGVTGSP---GRTGLPGLDGSAGPPGKEGPTGPQGL 1006
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----- 129
G S PG P PG + LPG A PG AP GP P
Sbjct: 1007 QGRSGPMGFPGRKGEPGNPGLPGSDGLPG---AEGSPGEDGAPGFRGPLGQKGEPAEVAA 1063
Query: 130 -----------------GPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
GP+ L PG L G A G + LPG
Sbjct: 1064 HLLQPGEKGEQGDKGETGPAGLAGLYGYPGKKGEQGLVGEKGARGPRGLTGLDGLPGTQG 1123
Query: 170 APDLPG------------------PSSAPDLPGPSSAPDLPGPSSA----PDLPGPSSAP 207
PG LPG P LPG A P LPG P
Sbjct: 1124 EQGTPGSPGDLGLPGPEGPPGPQGEQGTIGLPGSRGYPGLPGQKGAKSTLPGLPGVDGLP 1183
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP------DLPGPSSAPDLPGPSSAP 261
G P +PG LPG + LPGP PG S GP+
Sbjct: 1184 GKDGLDGEPGMPGKDGQVGLPGRNG---LPGPKGGRGNSGLMGFPGESGEKGNTGPAGER 1240
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
PG P + G P + G LPG
Sbjct: 1241 GFPGQQGLPGIGGLEGLPGVQGEKGRTGLPG 1271
>gi|15991848|gb|AAA19569.2| A type IV collagen [Homo sapiens]
Length = 1691
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 87/248 (35%), Gaps = 12/248 (4%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
+ V+ +P P G P L G S PG G +P LPG S P L
Sbjct: 1009 IIKGVSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLK 1068
Query: 76 GPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
G + PGP P G G PG G S LPG
Sbjct: 1069 GDNGQTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGA 1128
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1129 PGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGT 1188
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
PGPS +PGP+ LPGP PG AP PG G P L GP+
Sbjct: 1189 PGPSIT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAG 1241
Query: 251 APDLPGPS 258
P PG S
Sbjct: 1242 LPGAPGIS 1249
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 107/296 (36%), Gaps = 35/296 (11%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 661 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPR 717
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 718 GEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 771
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
G S P L G P L GP +P PG P PG S + G S P
Sbjct: 772 HKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLP- 830
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 831 -----GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPG------LVGLKG 879
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+P PG + P L GP G P +PG P +PG +PG + +
Sbjct: 880 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGKM 932
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 105/294 (35%), Gaps = 41/294 (13%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAP 81
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 631 GLPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQP 690
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 691 GSSGSKGEPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMI 738
Query: 142 SAPDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 195
+P LPG A D+ G + L G + G S P L G P L GP
Sbjct: 739 GSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKG 798
Query: 196 --SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDL---------PGPSS 241
+P PG P PG S + G S AP PG S P PG
Sbjct: 799 ERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSIV 858
Query: 242 APDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P L G +P PG + P L GP G P +PG
Sbjct: 859 KKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG 912
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 70/193 (36%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG LPG + + G P +PG S + + G +P LPG S
Sbjct: 1010 IKGVSGKPGPPGFMGIRGLPGLKGSSGITG---FPGMPGESGSQGIRG---SPGLPGASG 1063
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P L G + PGP P G G PG G S
Sbjct: 1064 LPGLKGDNGQTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDV 1123
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
LPG P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1124 GLPGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTK 1183
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1184 GTHGTPGPSITGV 1196
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 98/277 (35%), Gaps = 32/277 (11%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPS 78
+ P P PGP LPG P LPG LPG +P LPG A D+ G
Sbjct: 704 LVHLPELPGFPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAE 757
Query: 79 SA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGP 131
+ L G + G S P L G P L GP +P PG P PG
Sbjct: 758 NGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGS 817
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
S + G S P AP PG S P G PG LPG P
Sbjct: 818 SGPYGIKGKSGLP------GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGN 871
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
PG L G +P PG + P L GP G P +PG P +PG
Sbjct: 872 PG------LVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGL 922
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
+PG + GPS PG PGP P
Sbjct: 923 KGIPGSTGK---MGPSGRAGTPGEKGDRGNPGPVGIP 956
>gi|148536823|ref|NP_001838.2| collagen alpha-6(IV) chain isoform A precursor [Homo sapiens]
gi|116241307|sp|Q14031.3|CO4A6_HUMAN RecName: Full=Collagen alpha-6(IV) chain; Flags: Precursor
gi|119623092|gb|EAX02687.1| collagen, type IV, alpha 6, isoform CRA_a [Homo sapiens]
Length = 1691
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 87/248 (35%), Gaps = 12/248 (4%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
+ V+ +P P G P L G S PG G +P LPG S P L
Sbjct: 1009 IIKGVSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLK 1068
Query: 76 GPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
G + PGP P G G PG G S LPG
Sbjct: 1069 GDNGQTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGA 1128
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1129 PGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGT 1188
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
PGPS +PGP+ LPGP PG AP PG G P L GP+
Sbjct: 1189 PGPSIT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAG 1241
Query: 251 APDLPGPS 258
P PG S
Sbjct: 1242 LPGAPGIS 1249
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 107/296 (36%), Gaps = 35/296 (11%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 661 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPR 717
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 718 GEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 771
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
G S P L G P L GP +P PG P PG S + G S P
Sbjct: 772 HKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLP- 830
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 831 -----GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPG------LVGLKG 879
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+P PG + P L GP G P +PG P +PG +PG + +
Sbjct: 880 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGKM 932
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 105/294 (35%), Gaps = 41/294 (13%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAP 81
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 631 GLPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQP 690
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 691 GSSGSKGEPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMI 738
Query: 142 SAPDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 195
+P LPG A D+ G + L G + G S P L G P L GP
Sbjct: 739 GSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKG 798
Query: 196 --SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDL---------PGPSS 241
+P PG P PG S + G S AP PG S P PG
Sbjct: 799 ERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSIV 858
Query: 242 APDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P L G +P PG + P L GP G P +PG
Sbjct: 859 KKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG 912
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 70/193 (36%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG LPG + + G P +PG S + + G +P LPG S
Sbjct: 1010 IKGVSGKPGPPGFMGIRGLPGLKGSSGITG---FPGMPGESGSQGIRG---SPGLPGASG 1063
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P L G + PGP P G G PG G S
Sbjct: 1064 LPGLKGDNGQTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDV 1123
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
LPG P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1124 GLPGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTK 1183
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1184 GTHGTPGPSITGV 1196
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 98/277 (35%), Gaps = 32/277 (11%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPS 78
+ P P PGP LPG P LPG LPG +P LPG A D+ G
Sbjct: 704 LVHLPELPGFPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAE 757
Query: 79 SA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGP 131
+ L G + G S P L G P L GP +P PG P PG
Sbjct: 758 NGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGS 817
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
S + G S P AP PG S P G PG LPG P
Sbjct: 818 SGPYGIKGKSGLP------GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGN 871
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
PG L G +P PG + P L GP G P +PG P +PG
Sbjct: 872 PG------LVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGL 922
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
+PG + GPS PG PGP P
Sbjct: 923 KGIPGSTGK---MGPSGRAGTPGEKGDRGNPGPVGIP 956
>gi|16357503|ref|NP_378667.1| collagen alpha-6(IV) chain isoform B precursor [Homo sapiens]
gi|119623093|gb|EAX02688.1| collagen, type IV, alpha 6, isoform CRA_b [Homo sapiens]
Length = 1690
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 87/248 (35%), Gaps = 12/248 (4%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
+ V+ +P P G P L G S PG G +P LPG S P L
Sbjct: 1008 IIKGVSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLK 1067
Query: 76 GPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
G + PGP P G G PG G S LPG
Sbjct: 1068 GDNGQTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGA 1127
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1128 PGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGT 1187
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
PGPS +PGP+ LPGP PG AP PG G P L GP+
Sbjct: 1188 PGPSIT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAG 1240
Query: 251 APDLPGPS 258
P PG S
Sbjct: 1241 LPGAPGIS 1248
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 107/296 (36%), Gaps = 35/296 (11%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 660 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPR 716
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 717 GEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 770
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
G S P L G P L GP +P PG P PG S + G S P
Sbjct: 771 HKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLP- 829
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 830 -----GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPG------LVGLKG 878
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+P PG + P L GP G P +PG P +PG +PG + +
Sbjct: 879 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGKM 931
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 105/294 (35%), Gaps = 41/294 (13%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAP 81
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 630 GLPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQP 689
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 690 GSSGSKGEPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMI 737
Query: 142 SAPDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 195
+P LPG A D+ G + L G + G S P L G P L GP
Sbjct: 738 GSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKG 797
Query: 196 --SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDL---------PGPSS 241
+P PG P PG S + G S AP PG S P PG
Sbjct: 798 ERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSIV 857
Query: 242 APDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P L G +P PG + P L GP G P +PG
Sbjct: 858 KKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG 911
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 70/193 (36%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG LPG + + G P +PG S + + G +P LPG S
Sbjct: 1009 IKGVSGKPGPPGFMGIRGLPGLKGSSGITG---FPGMPGESGSQGIRG---SPGLPGASG 1062
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P L G + PGP P G G PG G S
Sbjct: 1063 LPGLKGDNGQTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDV 1122
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
LPG P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1123 GLPGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTK 1182
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1183 GTHGTPGPSITGV 1195
Score = 44.7 bits (104), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 98/277 (35%), Gaps = 32/277 (11%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPS 78
+ P P PGP LPG P LPG LPG +P LPG A D+ G
Sbjct: 703 LVHLPELPGFPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAE 756
Query: 79 SA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGP 131
+ L G + G S P L G P L GP +P PG P PG
Sbjct: 757 NGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGS 816
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
S + G S P AP PG S P G PG LPG P
Sbjct: 817 SGPYGIKGKSGLP------GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGN 870
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
PG L G +P PG + P L GP G P +PG P +PG
Sbjct: 871 PG------LVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGL 921
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
+PG + GPS PG PGP P
Sbjct: 922 KGIPGSTGK---MGPSGRAGTPGEKGDRGNPGPVGIP 955
>gi|395527288|ref|XP_003765782.1| PREDICTED: collagen alpha-2(IV) chain [Sarcophilus harrisii]
Length = 1700
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 96/257 (37%), Gaps = 27/257 (10%)
Query: 27 PDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P L G + P L PGP P GP P G P PG S P + G S L
Sbjct: 1133 PGLKGQTGFPGLTGLPGPQGDPGRAGP---PGEKGDQGWPGSPGLSGFPGIRGISGLHGL 1189
Query: 84 PGPSSAPDLPGP--SSAPDLPG------PSSAPD-LPGPSSAPDLPGPSSAPDLPGPSSA 134
PG P PG P PG P+ +PGP AP G GPS +
Sbjct: 1190 PGTKGFPGSPGTDGYGNPGFPGLFGDKGERGEPNTIPGPLGAPGQKGERGTIGEQGPSGS 1249
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDL 191
P GP P PS+ LPG +P L GP P PGP+S P + G +P
Sbjct: 1250 P---GPQGLPGFTSPSNISGLPGDKGSPGLFGPQGYRGPPGAPGPTSFPGIKGEVGSPGF 1306
Query: 192 ---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
GP P PGP P + G P GP L G P G G
Sbjct: 1307 TGERGPKGWPGDPGPQGRPGVYG---LPGEKGPKGQQGLMGYHGIPGSIGDRGPKGPKGD 1363
Query: 249 SSAPDLPGPSSAPDLPG 265
P +PG +P +PG
Sbjct: 1364 RGFPGIPGAMGSPGIPG 1380
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 99/267 (37%), Gaps = 42/267 (15%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
+ G P L G + P L G LPGP P GP P G P PG S
Sbjct: 1126 IKGSQGLPGLKGQTGFPGLTG------LPGPQGDPGRAGP---PGEKGDQGWPGSPGLSG 1176
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLP------GPSSAPD-LPGPSSAPDLPG 166
P + G S LPG P PG P P G P+ +PGP AP G
Sbjct: 1177 FPGIRGISGLHGLPGTKGFPGSPGTDGYGNPGFPGLFGDKGERGEPNTIPGPLGAPGQKG 1236
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSS 223
GPS + PGP P PS+ LPG +P L GP P PGP+S
Sbjct: 1237 ERGTIGEQGPSGS---PGPQGLPGFTSPSNISGLPGDKGSPGLFGPQGYRGPPGAPGPTS 1293
Query: 224 APDLPGPSSAPDL---PGPSSAPDLPGPSSAPDL------PGPSSAPDLPG----PSSAP 270
P + G +P GP P PGP P + GP L G P S
Sbjct: 1294 FPGIKGEVGSPGFTGERGPKGWPGDPGPQGRPGVYGLPGEKGPKGQQGLMGYHGIPGSIG 1353
Query: 271 DL-----PGPSSAPDLPGPSSAPDLPG 292
D G P +PG +P +PG
Sbjct: 1354 DRGPKGPKGDRGFPGIPGAMGSPGIPG 1380
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 93/257 (36%), Gaps = 19/257 (7%)
Query: 22 ERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
ER +PGP AP G GPS + PGP P PS+ LPG +P
Sbjct: 1218 ERGEPNTIPGPLGAPGQKGERGTIGEQGPSGS---PGPQGLPGFTSPSNISGLPGDKGSP 1274
Query: 82 DLPGPSSA---PDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAP 135
L GP P PGP+S P + G +P GP P PGP P + G P
Sbjct: 1275 GLFGPQGYRGPPGAPGPTSFPGIKGEVGSPGFTGERGPKGWPGDPGPQGRPGVYG---LP 1331
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP----SSAPDL 191
GP L G P G G P +PG +P +PG ++ P +
Sbjct: 1332 GEKGPKGQQGLMGYHGIPGSIGDRGPKGPKGDRGFPGIPGAMGSPGIPGVPLRIATEPGV 1391
Query: 192 PGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
GP P + G PG LPG G S+ P G GP
Sbjct: 1392 AGPHGKRGPPGMQGEMGPQGPPGDPGLRGLPGKPGPQGRGGMSALPGFRGDEGPMGHQGP 1451
Query: 249 SSAPDLPGPSSAPDLPG 265
PG +P LPG
Sbjct: 1452 VGQEGEPGRPGSPGLPG 1468
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 88/248 (35%), Gaps = 23/248 (9%)
Query: 50 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 109
P + LPG +P G P LPG L G G + PGP
Sbjct: 673 PKGSQGLPGLPGSPGAKGQRGLPGLPGVDGFIGLKG------FQGDAGREGFPGPPGFVG 726
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGP 167
G A LPG +P G S P GP+ LPG + LPG P +PG
Sbjct: 727 PRGSKGATGLPGLDGSP---GSSGLPGSVGPAGQKGLPGEVLGAQTGLPGDPGLPGIPGL 783
Query: 168 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 227
GP PG P +PG P PGPS P LPGP PGP L
Sbjct: 784 KGEQGNRGPQGFRGSPG---MPGMPGLKGQPGFPGPSGQPGLPGPPGTHGFPGPQGQAGL 840
Query: 228 PGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
PG LPGPS LPG +PGP L G G PG
Sbjct: 841 PG------LPGPSGFAGLPGDRGDRGDIGVPGPVGMKGLDGDRGDTGFIGEQGRRGEPGF 894
Query: 285 SSAPDLPG 292
P LPG
Sbjct: 895 QGIPGLPG 902
>gi|466538|dbj|BAA04809.1| collagen [Homo sapiens]
Length = 1678
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 87/248 (35%), Gaps = 12/248 (4%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
+ V+ +P P G P L G S PG G +P LPG S P L
Sbjct: 1008 IIKGVSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLK 1067
Query: 76 GPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
G + PGP P G G PG G S LPG
Sbjct: 1068 GDNGQTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGA 1127
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1128 PGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGT 1187
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
PGPS +PGP+ LPGP PG AP PG G P L GP+
Sbjct: 1188 PGPSIT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAG 1240
Query: 251 APDLPGPS 258
P PG S
Sbjct: 1241 LPGAPGIS 1248
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 97/307 (31%), Positives = 109/307 (35%), Gaps = 41/307 (13%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 660 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPR 716
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 717 GEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 770
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPS---S 178
G S P L G P L GP +P PG P PG S + G S
Sbjct: 771 HKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPG 830
Query: 179 APDLPGPSSAPDL---------PGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPD 226
AP PG S P PG LPG P L G +P PG + P
Sbjct: 831 APGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPA 890
Query: 227 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
L GP G P +PG LPG S L G + GPS PG
Sbjct: 891 LSGPKGEKGSVGFVGFPGIPG------LPGISGTRGLKGIPGSTGKMGPSGRAGTPGEKG 944
Query: 287 APDLPGP 293
PGP
Sbjct: 945 DRGNPGP 951
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 105/294 (35%), Gaps = 41/294 (13%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAP 81
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 630 GLPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQP 689
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 690 GSSGSKGEPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMI 737
Query: 142 SAPDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 195
+P LPG A D+ G + L G + G S P L G P L GP
Sbjct: 738 GSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKG 797
Query: 196 --SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDL---------PGPSS 241
+P PG P PG S + G S AP PG S P PG
Sbjct: 798 ERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSIV 857
Query: 242 APDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P L G +P PG + P L GP G P +PG
Sbjct: 858 KKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG 911
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 100/277 (36%), Gaps = 32/277 (11%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EP PG P+LPG PGP LPG P LPG LPG +P LPG
Sbjct: 697 EPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPG 744
Query: 86 PSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDL 137
A D+ G + L G + G S P L G P L GP +P
Sbjct: 745 SKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGT 804
Query: 138 PGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
PG P PG S + G S AP PG S P G PG LPG
Sbjct: 805 PGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGL 864
Query: 195 S---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
P L G +P PG + P L GP G P +PG LPG S
Sbjct: 865 KGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG------LPGISGT 918
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
L G + GPS PG PGP P
Sbjct: 919 RGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIP 955
>gi|219130348|ref|XP_002185329.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403244|gb|EEC43198.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 380
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 128/306 (41%), Positives = 165/306 (53%), Gaps = 52/306 (16%)
Query: 27 PDLPGPS-------SAPDLPGPS-SAPDLPGPS-SAPDLPGPS-SAPDLPGPSSAPD--L 74
P + GPS +P GPS + P + GPS + P + GPS + P + GPS + D L
Sbjct: 75 PSMTGPSDSDDRRLKSPSSTGPSATGPSMTGPSATGPSMTGPSMTGPSMTGPSDSDDRRL 134
Query: 75 PGPSS-APDLPGPS-SAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPD--LPGPSS-APDL 128
PSS P L GPS + P + GPS + P + GPS + GPS + D L PSS P L
Sbjct: 135 RSPSSTGPSLTGPSATGPSMTGPSATGPSMTGPS----MTGPSDSDDRRLRSPSSTGPSL 190
Query: 129 PGPSSAPDLPGPS-SAPDLPGPS-SAPDLPGPSSAPD--LPGPSS-APDLPGPS-SAPDL 182
GPS L GPS + P + GPS + P + GPS + D L PSS P L GPS + P +
Sbjct: 191 TGPS----LTGPSATGPSMTGPSVTGPSMTGPSDSDDRRLRSPSSTGPSLTGPSGTGPSM 246
Query: 183 PGPS-SAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPD--LPGPSS-APDLPGPS-SAPDL 236
GPS + P + GPS + P + GPS + GPS + D L PSS P L GPS + P +
Sbjct: 247 TGPSATGPSVTGPSATGPSMTGPS----MTGPSDSDDRRLRSPSSTGPSLTGPSATGPSM 302
Query: 237 PGPS-SAPDLPGPSSAPDLPGPSSAPD--LPGPSS-APDLPGPS-SAPDLPGPS-SAPDL 290
GPS + P + GPS + GPS + D L PSS P L GPS + P GPS + P +
Sbjct: 303 TGPSVTGPSMTGPS----MTGPSDSDDRRLRSPSSTGPSLTGPSMTGPSATGPSVTGPSV 358
Query: 291 PGPSST 296
GPS T
Sbjct: 359 TGPSMT 364
>gi|326922791|ref|XP_003207628.1| PREDICTED: collagen alpha-1(XXVIII) chain-like [Meleagris
gallopavo]
Length = 1224
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 76/198 (38%), Gaps = 27/198 (13%)
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
GP + LPG LPGP LPG + P G PG P L G +
Sbjct: 438 KGPPGSRGLPGQG----LPGPKGEQGLPGETGVPGERGIGE----PGSKGEPGLSGLAGL 489
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
P LPG AP G P L GP AP + D G L GP+ AP GP
Sbjct: 490 PGLPGEDGAPGQKGEPGLPGLRGPEGAPGIGIQGEKGD-QGQRGIRGLTGPTGAP---GP 545
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--DLPGPSSAP 270
+ A PG +PGP +PGP LPG L GP P LPG
Sbjct: 546 AGAKGEPGVPGRLGMPGPPGRA-VPGPKGDIGLPG------LAGPIGEPGFGLPGAKGDR 598
Query: 271 DLPGPSSAPDLPGPSSAP 288
LPG LPGP A
Sbjct: 599 GLPG------LPGPYGAK 610
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 105/356 (29%), Gaps = 70/356 (19%)
Query: 7 KHVFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 66
+ V TE + E LPGP+ G P L G P L G +
Sbjct: 201 EKVLTEMCSQTTICKCEKGERGLPGPTGKKGRTGDDGTPGLKGAKGEPGLSGIPGRDGIE 260
Query: 67 GPSSAPDLPGPSSAPDLPGPS--SAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 123
G S G +PG P+ P GP A L GP GP P G
Sbjct: 261 GKSGYKGEKGERGECGIPGIKGDRGPEGPVGPKGARGLQGPQGQSGDQGPEGLPGSKGER 320
Query: 124 -----------SAPDLPGPSSAPDLPGPSSAPDLP--------GPSSAPDLPGPSSAP-- 162
+ LPGP L G P GP + G P
Sbjct: 321 GLPGPPGLPGETGIGLPGPKGDTGLTGRPGPVGPPGVGEPGVLGPQGPQGVQGERGLPGE 380
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPD-------------------------LPGPSS- 196
LPG GP LPG S + + GP
Sbjct: 381 GLPGAKGDRGFDGPKGPRGLPGISIKGEKGEFGPPGLPGPIGLPGIGIQGEKGVEGPKGP 440
Query: 197 -------APDLPGPSSAPDLPGPSSAP-----DLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
LPGP LPG + P PG P L G + P LPG AP
Sbjct: 441 PGSRGLPGQGLPGPKGEQGLPGETGVPGERGIGEPGSKGEPGLSGLAGLPGLPGEDGAPG 500
Query: 245 LPGPSSAPDLPGPSSAPDL--------PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G P L GP AP + G L GP+ AP G P +PG
Sbjct: 501 QKGEPGLPGLRGPEGAPGIGIQGEKGDQGQRGIRGLTGPTGAPGPAGAKGEPGVPG 556
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 70/184 (38%), Gaps = 21/184 (11%)
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
GP + LPG LPGP LPG + P G PG P L G +
Sbjct: 438 KGPPGSRGLPGQG----LPGPKGEQGLPGETGVPGERGIGE----PGSKGEPGLSGLAGL 489
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
P LPG AP G P L GP AP + D G L GP+ AP G
Sbjct: 490 PGLPGEDGAPGQKGEPGLPGLRGPEGAPGIGIQGEKGD-QGQRGIRGLTGPTGAPGPAGA 548
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--DLPGPSSAP 288
P +PG P PG + +PGP LPG L GP P LPG
Sbjct: 549 KGEPGVPGRLGMPGPPGRA----VPGPKGDIGLPG------LAGPIGEPGFGLPGAKGDR 598
Query: 289 DLPG 292
LPG
Sbjct: 599 GLPG 602
>gi|219669059|ref|YP_002459494.1| hypothetical protein Dhaf_3035 [Desulfitobacterium hafniense DCB-2]
gi|219539319|gb|ACL21058.1| hypothetical protein Dhaf_3035 [Desulfitobacterium hafniense DCB-2]
Length = 676
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 85/260 (32%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 91
PS +P PS P PS P P+ P PS P PS P PS
Sbjct: 125 PSDGKGVPVPSDGKGTPVPSDGKGTPVPNDGKGAPVPSDGKGTPVPSDGKGTPVPSDGKG 184
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
P PS P PS P PS P PS P PS P PS P PS
Sbjct: 185 TPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSD 244
Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
P PS P PS P PS P PS P PS P PS P
Sbjct: 245 GKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPV 304
Query: 212 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 271
PS P PS P PS P PS P PS P P P
Sbjct: 305 PSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGASAPGDGKSTPAPGDGKG 364
Query: 272 LPGPSSAPDLPGPSSAPDLP 291
P PS P PS P
Sbjct: 365 APVPSDGKGTPVPSDGKGTP 384
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 84/254 (33%)
Query: 41 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 100
PS +P PS P PS P P+ P PS P PS P PS
Sbjct: 125 PSDGKGVPVPSDGKGTPVPSDGKGTPVPNDGKGAPVPSDGKGTPVPSDGKGTPVPSDGKG 184
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
P PS P PS P PS P PS P PS P PS P PS
Sbjct: 185 TPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSD 244
Query: 161 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
P PS P PS P PS P PS P PS P PS P
Sbjct: 245 GKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPV 304
Query: 221 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 280
PS P PS P PS P PS P PS P P P
Sbjct: 305 PSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGASAPGDGKSTPAPGDGKG 364
Query: 281 LPGPSSAPDLPGPS 294
P PS P PS
Sbjct: 365 APVPSDGKGTPVPS 378
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 83/254 (32%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+P PS P PS P P+ P PS P PS P PS P PS
Sbjct: 131 VPVPSDGKGTPVPSDGKGTPVPNDGKGAPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSD 190
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P PS P PS P PS P PS P PS P PS P
Sbjct: 191 GKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPV 250
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
PS P PS P PS P PS P PS P PS P PS
Sbjct: 251 PSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKG 310
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
P PS P PS P PS P PS P P P P PS
Sbjct: 311 TPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGASAPGDGKSTPAPGDGKGAPVPSD 370
Query: 269 APDLPGPSSAPDLP 282
P PS P
Sbjct: 371 GKGTPVPSDGKGTP 384
>gi|116326001|ref|NP_082046.2| collagen alpha-1(XXIV) chain precursor [Mus musculus]
gi|341940379|sp|Q30D77.2|COOA1_MOUSE RecName: Full=Collagen alpha-1(XXIV) chain; Flags: Precursor
Length = 1733
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 101/300 (33%), Gaps = 35/300 (11%)
Query: 27 PDLPGPSSAPDLPGPSS----------APDLPGPSSAPDL--PGPSSAPDLPGPSSAPDL 74
P L G AP PGP A D G + + G P LPG + +P
Sbjct: 927 PGLVGARGAPGSPGPKGQRGPRGPDGLAGDQGGHGAKGEKGNQGKRGLPGLPGKAGSPGE 986
Query: 75 PGPSSAPDLPG-PSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
G P G P S+ D+ GP+ P LPG + P G P G S PG
Sbjct: 987 RGVQGKPGFQGLPGSSGDV-GPAGEPGPRGLPGIAGLPGEMGVEGPPGTEGDSGLQGEPG 1045
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
G + A PGP P PG L G PG S P G
Sbjct: 1046 AKGDGGPAGSAGATGEPGPRGEPGAPGEEG---LQGKDGLKGAPGGSGLPGEDGDKGEMG 1102
Query: 191 LPGPS------SAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPG 238
LPG + LPGP PG GP+ GP + G
Sbjct: 1103 LPGTAGPVGRPGQMGLPGPEGIVGTPGQRGRLGKKGDKGQVGPTGEAGSRGPPGSVGENG 1162
Query: 239 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVL 298
P A G L GP P +PG PGPS LPGP PG STVL
Sbjct: 1163 PKGARGTRGAVGPLGLMGPEGEPGIPGYRGHQGQPGPSG---LPGPKGEKGYPGEDSTVL 1219
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 80/254 (31%), Gaps = 16/254 (6%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP + LPGP PG G GP+ GP + GP A
Sbjct: 1112 RPGQMGLPGPEGIVGTPGQRGRLGKKGDKGQV---GPTGEAGSRGPPGSVGENGPKGARG 1168
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-------P 135
G L GP P +PG PGPS LPGP PG S P
Sbjct: 1169 TRGAVGPLGLMGPEGEPGIPGYRGHQGQPGPSG---LPGPKGEKGYPGEDSTVLGPPGPP 1225
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
PGP G G P L G + PG GP GP
Sbjct: 1226 GEPGPMGEQGETGEHGEEGYKGHMGVPGLRGATGQQGPPGEPGDQGGQGPKGERGSEGPQ 1285
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
+PGPS P +PG P PGP PG PG P G P P
Sbjct: 1286 GKRGVPGPSGKPGIPG---VPGFPGPKGLQGYPGVDGMSGYPGKPGLPGKQGLLGVPGSP 1342
Query: 256 GPSSAPDLPGPSSA 269
G + PGP
Sbjct: 1343 GRTGVAGSPGPQGG 1356
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 78/256 (30%), Gaps = 31/256 (12%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA----------------- 71
L GP P +PG PGPS LPGP PG S
Sbjct: 1178 LMGPEGEPGIPGYRGHQGQPGPSG---LPGPKGEKGYPGEDSTVLGPPGPPGEPGPMGEQ 1234
Query: 72 --------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 123
G P L G + PG GP GP +PGPS
Sbjct: 1235 GETGEHGEEGYKGHMGVPGLRGATGQQGPPGEPGDQGGQGPKGERGSEGPQGKRGVPGPS 1294
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
P +PG P PGP PG PG P G P PG + P
Sbjct: 1295 GKPGIPG---VPGFPGPKGLQGYPGVDGMSGYPGKPGLPGKQGLLGVPGSPGRTGVAGSP 1351
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
GP GP +P PGP LPG P G P G AP L G
Sbjct: 1352 GPQGGKGASGPPGSPGAPGPKGEQGLPGQPGVPGQRGHRGTPGDQGLRGAPGLKGQPGEH 1411
Query: 244 DLPGPSSAPDLPGPSS 259
G + PGP
Sbjct: 1412 GDQGLAGFQGFPGPRG 1427
>gi|17568913|ref|NP_510663.1| Protein LET-2, isoform b [Caenorhabditis elegans]
gi|351061153|emb|CCD68907.1| Protein LET-2, isoform b [Caenorhabditis elegans]
Length = 1759
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 107/300 (35%), Gaps = 49/300 (16%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+PG +P PG LPG P L G P PG LPG S P PG
Sbjct: 822 VPGQPGSPGFPGLKGDAGLPGLPGTPGLEGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKG 881
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
LPG +PG +P PG P +PG LPG L G AP G
Sbjct: 882 DAGLPG------VPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGAP---G 932
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPG---------------PSSAPDLPGPSSAPDLP- 192
S AP LPG P + G + P +PG P P +PG P +
Sbjct: 933 QSGAPGLPGAPGYPGMKGNAGIPGVPGFKGDGGLPGLPGLNGPKGEPGVPGMPGTPGMKG 992
Query: 193 -----------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--- 238
G S P + G LPG GP++ G + P PG
Sbjct: 993 NGGLPGLPGRDGLSGVPGMKGDRGFNGLPGEKGEA---GPAARDGQKGDAGLPGQPGLRG 1049
Query: 239 ---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPG 292
PS P +PG LPG P PG P +PG + AP PG P PG
Sbjct: 1050 PQGPSGLPGVPGFKGETGLPG-YGQPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPG 1108
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 113/311 (36%), Gaps = 53/311 (17%)
Query: 27 PDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +PGP P LPG + PG P PG P L G + P LPG P L
Sbjct: 794 PGIPGPKGDVGNPGLPGLNGQKGEPG-VGVPGQPGSPGFPGLKGDAGLPGLPG---TPGL 849
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGP 140
G P PG LPG S P PG + P +PG +P PG P +PG
Sbjct: 850 EGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKGDAGLPGVPGREGSPGFPGQDGLPGVPGM 909
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------- 193
LPG L G AP G S AP LPG P + G + P +PG
Sbjct: 910 KGEDGLPGLPGVTGLKGDLGAP---GQSGAPGLPGAPGYPGMKGNAGIPGVPGFKGDGGL 966
Query: 194 --------PSSAPDLPGPSSAPDLP------------GPSSAPDLPGPSSAPDLPG---- 229
P P +PG P + G S P + G LPG
Sbjct: 967 PGLPGLNGPKGEPGVPGMPGTPGMKGNGGLPGLPGRDGLSGVPGMKGDRGFNGLPGEKGE 1026
Query: 230 --PSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
P++ G + P PG PS P +PG LPG P PG P +
Sbjct: 1027 AGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLPG-YGQPGQPGEKGLPGI 1085
Query: 282 PGPSSAPDLPG 292
PG + PG
Sbjct: 1086 PGKAGRQGAPG 1096
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 94/259 (36%), Gaps = 34/259 (13%)
Query: 22 ERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------- 74
E + P PG P LPG PG PG P + G S P
Sbjct: 720 ENQVNPAPPGQPGLPGLPGTKGEGGYPGRPGEVGQPGFPGLPGMKGDSGLPGPPGLPGHP 779
Query: 75 -----PGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
G P LPG +PGP P LPG + PG P PG P
Sbjct: 780 GVPGDKGFGGVPGLPG------IPGPKGDVGNPGLPGLNGQKGEPG-VGVPGQPGSPGFP 832
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
L G + P LPG P L G P PG LPG S P PG LPG
Sbjct: 833 GLKGDAGLPGLPG---TPGLEGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKGDAGLPG-- 887
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
+PG +P PG P +PG LPG L G A PG S AP LP
Sbjct: 888 ----VPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGA---PGQSGAPGLP 940
Query: 247 GPSSAPDLPGPSSAPDLPG 265
G P + G + P +PG
Sbjct: 941 GAPGYPGMKGNAGIPGVPG 959
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 101/295 (34%), Gaps = 22/295 (7%)
Query: 26 EPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PG P +PG + AP PG P PG PG P G P
Sbjct: 1073 QPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPG 1132
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDL-- 137
G PG S AP L G P + G P +PG PG
Sbjct: 1133 QKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDKGQGGLPGIPGDRGMDGYPGQKGENGYPG 1192
Query: 138 ----------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
G + P PG +P PG P +PG PG LPG S
Sbjct: 1193 QPGLPGLGGEKGFAGTPGFPGLKGSPGYPGQDGLPGIPGLKGDSGFPGQPGQEGLPGLSG 1252
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
+ G P PG S GP AP L G P LPG L G AP L G
Sbjct: 1253 EKGMGGLPGMPGQPG-QSIAGPVGPPGAPGLQGKDGFPGLPGQKGESGLSGLPGAPGLKG 1311
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL 302
S P PG DL G + P G P +PG P +PG V G+ L
Sbjct: 1312 ESGMPGFPGAKG--DL-GANGIPGKRGEDGLPGVPGRDGQPGIPGLKGEVGGAGL 1363
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 74/214 (34%), Gaps = 23/214 (10%)
Query: 69 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 128
+ P PG +P PG P +PG PG LPG S + G P
Sbjct: 1206 AGTPGFPGLKGSPGYPGQDGLPGIPGLKGDSGFPGQPGQEGLPGLSGEKGMGGLPGMPGQ 1265
Query: 129 PGPS--------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
PG S AP L G P LPG L G AP L G S P PG
Sbjct: 1266 PGQSIAGPVGPPGAPGLQGKDGFPGLPGQKGESGLSGLPGAPGLKGESGMPGFPGAKG-- 1323
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
DL G + P G P +PG P +PG L G LPG P +PG
Sbjct: 1324 DL-GANGIPGKRGEDGLPGVPGRDGQPGIPG------LKGEVGGAGLPGQPGFPGIPG-- 1374
Query: 241 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
L G P PG PG P G
Sbjct: 1375 ----LKGEGGLPGFPGAKGEAGFPGTPGVPGYAG 1404
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 74/211 (35%), Gaps = 13/211 (6%)
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPS 141
GPS P +PG LPG P PG P +PG + AP PG P PG
Sbjct: 1052 GPSGLPGVPGFKGETGLPG-YGQPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMK 1110
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
PG P G P G PG S AP L G P + G LP
Sbjct: 1111 GESGYPGQDGLPGRDGLPGVPGQKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDKGQGGLP 1170
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
G P G P G + P PG G + P PG +P PG P
Sbjct: 1171 G---IPGDRGMDGYPGQKGENGYPGQPGLPGLGGEKGFAGTPGFPGLKGSPGYPGQDGLP 1227
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG L G S P PG P L G
Sbjct: 1228 GIPG------LKGDSGFPGQPGQEGLPGLSG 1252
>gi|732526|gb|AAA64312.1| alpha2(IV) collagen [Caenorhabditis elegans]
Length = 1795
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 107/300 (35%), Gaps = 49/300 (16%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+PG +P PG LPG P L G P PG LPG S P PG
Sbjct: 858 VPGQPGSPGFPGLKGDAGLPGLPGTPGLEGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKG 917
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
LPG +PG +P PG P +PG LPG L G AP G
Sbjct: 918 DAGLPG------VPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGAP---G 968
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPG---------------PSSAPDLPGPSSAPDLP- 192
S AP LPG P + G + P +PG P P +PG P +
Sbjct: 969 QSGAPGLPGAPGYPGMKGNAGIPGVPGFKGDGGLPGLPGLNGPKGEPGVPGMPGTPGMKG 1028
Query: 193 -----------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--- 238
G S P + G LPG GP++ G + P PG
Sbjct: 1029 NGGLPGLPGRDGLSGVPGMKGDRGFNGLPGEKGEA---GPAARDGQKGDAGLPGQPGLRG 1085
Query: 239 ---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPG 292
PS P +PG LPG P PG P +PG + AP PG P PG
Sbjct: 1086 PQGPSGLPGVPGFKGETGLPG-YGQPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPG 1144
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 113/311 (36%), Gaps = 53/311 (17%)
Query: 27 PDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +PGP P LPG + PG P PG P L G + P LPG P L
Sbjct: 830 PGIPGPKGDVGNPGLPGLNGQKGEPG-VGVPGQPGSPGFPGLKGDAGLPGLPG---TPGL 885
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGP 140
G P PG LPG S P PG + P +PG +P PG P +PG
Sbjct: 886 EGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKGDAGLPGVPGREGSPGFPGQDGLPGVPGM 945
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------- 193
LPG L G AP G S AP LPG P + G + P +PG
Sbjct: 946 KGEDGLPGLPGVTGLKGDLGAP---GQSGAPGLPGAPGYPGMKGNAGIPGVPGFKGDGGL 1002
Query: 194 --------PSSAPDLPGPSSAPDLP------------GPSSAPDLPGPSSAPDLPG---- 229
P P +PG P + G S P + G LPG
Sbjct: 1003 PGLPGLNGPKGEPGVPGMPGTPGMKGNGGLPGLPGRDGLSGVPGMKGDRGFNGLPGEKGE 1062
Query: 230 --PSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
P++ G + P PG PS P +PG LPG P PG P +
Sbjct: 1063 AGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLPG-YGQPGQPGEKGLPGI 1121
Query: 282 PGPSSAPDLPG 292
PG + PG
Sbjct: 1122 PGKAGRQGAPG 1132
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 94/259 (36%), Gaps = 34/259 (13%)
Query: 22 ERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------- 74
E + P PG P LPG PG PG P + G S P
Sbjct: 756 ENQVNPAPPGQPGLPGLPGTKGEGGYPGRPGEVGQPGFPGLPGMKGDSGLPGPPGLPGHP 815
Query: 75 -----PGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
G P LPG +PGP P LPG + PG P PG P
Sbjct: 816 GVPGDKGFGGVPGLPG------IPGPKGDVGNPGLPGLNGQKGEPG-VGVPGQPGSPGFP 868
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
L G + P LPG P L G P PG LPG S P PG LPG
Sbjct: 869 GLKGDAGLPGLPG---TPGLEGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKGDAGLPG-- 923
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
+PG +P PG P +PG LPG L G A PG S AP LP
Sbjct: 924 ----VPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGA---PGQSGAPGLP 976
Query: 247 GPSSAPDLPGPSSAPDLPG 265
G P + G + P +PG
Sbjct: 977 GAPGYPGMKGNAGIPGVPG 995
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 101/295 (34%), Gaps = 22/295 (7%)
Query: 26 EPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PG P +PG + AP PG P PG PG P G P
Sbjct: 1109 QPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPG 1168
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDL-- 137
G PG S AP L G P + G P +PG PG
Sbjct: 1169 QKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDKGQGGLPGIPGDRGMDGYPGQKGENGYPG 1228
Query: 138 ----------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
G + P PG +P PG P +PG PG LPG S
Sbjct: 1229 QPGLPGLGGEKGFAGTPGFPGLKGSPGYPGQDGLPGIPGLKGDSGFPGQPGQEGLPGLSG 1288
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
+ G P PG S GP AP L G P LPG L G AP L G
Sbjct: 1289 EKGMGGLPGMPGQPG-QSIAGPVGPPGAPGLQGKDGFPGLPGQKGESGLSGLPGAPGLKG 1347
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL 302
S P PG DL G + P G P +PG P +PG V G+ L
Sbjct: 1348 ESGMPGFPGAKG--DL-GANGIPGKRGEDGLPGVPGRDGQPGIPGLKGEVGGAGL 1399
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 99/301 (32%), Gaps = 38/301 (12%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPG-PSSAPDL-----PGP 77
P G AP PG P PG PG P LPG P DL PG
Sbjct: 1122 PGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPGQKGDLGQSGQPGL 1181
Query: 78 SSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDL------------PGP 122
S AP L G P + G P +PG PG G
Sbjct: 1182 SGAPGLDGQPGVPGIRGDKGQGGLPGIPGDRGMDGYPGQKGENGYPGQPGLPGLGGEKGF 1241
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
+ P PG +P PG P +PG PG LPG S + G P
Sbjct: 1242 AGTPGFPGLKGSPGYPGQDGLPGIPGLKGDSGFPGQPGQEGLPGLSGEKGMGGLPGMPGQ 1301
Query: 183 PGPS--------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--- 231
PG S AP L G P LPG L G AP L G S P PG
Sbjct: 1302 PGQSIAGPVGPPGAPGLQGKDGFPGLPGQKGESGLSGLPGAPGLKGESGMPGFPGAKGDL 1361
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
A +PG LPG P G P L G LPG P +PG LP
Sbjct: 1362 GANGIPGKRGEDGLPG---VPGRDGQPGIPGLKGEVGGAGLPGQPGFPGIPGLKGEGGLP 1418
Query: 292 G 292
G
Sbjct: 1419 G 1419
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 74/214 (34%), Gaps = 23/214 (10%)
Query: 69 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 128
+ P PG +P PG P +PG PG LPG S + G P
Sbjct: 1242 AGTPGFPGLKGSPGYPGQDGLPGIPGLKGDSGFPGQPGQEGLPGLSGEKGMGGLPGMPGQ 1301
Query: 129 PGPS--------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
PG S AP L G P LPG L G AP L G S P PG
Sbjct: 1302 PGQSIAGPVGPPGAPGLQGKDGFPGLPGQKGESGLSGLPGAPGLKGESGMPGFPGAKG-- 1359
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
DL G + P G P +PG P +PG L G LPG P +PG
Sbjct: 1360 DL-GANGIPGKRGEDGLPGVPGRDGQPGIPG------LKGEVGGAGLPGQPGFPGIPG-- 1410
Query: 241 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
L G P PG PG P G
Sbjct: 1411 ----LKGEGGLPGFPGAKGEAGFPGTPGVPGYAG 1440
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 60/147 (40%), Gaps = 10/147 (6%)
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
AP + GPS P LPGP P G S P LPG P L G AP G + P
Sbjct: 465 GAPGVSGPSGIPGLPGPKGEPGYRGTPGQSIPGLPGKDGKPGLDG---APGRKGENGLPG 521
Query: 137 LPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
+ GP S LPG PGP+ G + P PG + D G SA PG
Sbjct: 522 VRGPPGDSLNGLPGAPGQRGAPGPNGYDGRDGVNGLPGAPG--TKGDRGGTCSA-CAPGT 578
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGP 221
LPG S P G P +PGP
Sbjct: 579 KGEKGLPGYSGQPGPQGDRGLPGMPGP 605
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 74/211 (35%), Gaps = 13/211 (6%)
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPS 141
GPS P +PG LPG P PG P +PG + AP PG P PG
Sbjct: 1088 GPSGLPGVPGFKGETGLPG-YGQPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMK 1146
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
PG P G P G PG S AP L G P + G LP
Sbjct: 1147 GESGYPGQDGLPGRDGLPGVPGQKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDKGQGGLP 1206
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
G P G P G + P PG G + P PG +P PG P
Sbjct: 1207 G---IPGDRGMDGYPGQKGENGYPGQPGLPGLGGEKGFAGTPGFPGLKGSPGYPGQDGLP 1263
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG L G S P PG P L G
Sbjct: 1264 GIPG------LKGDSGFPGQPGQEGLPGLSG 1288
>gi|332226106|ref|XP_003262230.1| PREDICTED: collagen alpha-6(IV) chain isoform 2 [Nomascus leucogenys]
Length = 1688
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 87/248 (35%), Gaps = 12/248 (4%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
+ V+ +P P G P L G S PG G +P LPG S P L
Sbjct: 1006 ITKGVSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLK 1065
Query: 76 GPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
G + PGP P G G PG G S LPG
Sbjct: 1066 GDNGQTAEISGSPGPKGQPGESGFKGTKGKDGLIGNIGFPGNKGEDGKVGVSGDVGLPGA 1125
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1126 PGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGT 1185
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
PGPS +PGP+ LPGP PG AP PG G P L GP+
Sbjct: 1186 PGPSIT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDQGFPGLQGPAG 1238
Query: 251 APDLPGPS 258
P PG S
Sbjct: 1239 LPGAPGIS 1246
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 101/293 (34%), Gaps = 29/293 (9%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 658 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGNKGEPGSPGLVHLPELPGFPGPR 714
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 715 GEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 768
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
G S P L G P L GP G +P PG P PG S + G
Sbjct: 769 DKGFLGDSGLPGLKGVHGKPGLLGPK------GERGSPGTPGQVGQPGTPGSSGPYGIKG 822
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
S P AP PG S P G PG LPG P PG
Sbjct: 823 KSGLP------GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGLVGLKG 876
Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
PG LP PS G PG P +PG +PG + +
Sbjct: 877 SPGSPGVAGLPAPSGPKGEKGSVGFVGFPGIPGLPGIPGTRGLKGIPGSTGKM 929
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 93/263 (35%), Gaps = 32/263 (12%)
Query: 41 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 100
P P GPS P PG PGP + LPG P G P PG P+
Sbjct: 653 PCIIPGSYGPSGFPGTPG------FPGPKGSRGLPGTPGQPGSSGNKGEPGSPGLVHLPE 706
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPS 159
LPG PGP LPG P LPG LPG +P LPG A D+ G
Sbjct: 707 LPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAE 754
Query: 160 SA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGP 212
+ L G + G S P L G P L GP +P PG P PG
Sbjct: 755 NGAPGEQGLQGLTGDKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGS 814
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
S + G S P AP PG S P G PG LPG P
Sbjct: 815 SGPYGIKGKSGLP------GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGN 868
Query: 273 PGPSSAPDLPGPSSAPDLPGPSS 295
PG PG LP PS
Sbjct: 869 PGLVGLKGSPGSPGVAGLPAPSG 891
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 56/156 (35%), Gaps = 11/156 (7%)
Query: 156 PGPSSAPDLPGPSSAPDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
PGP P + GP P L G P LPGP G P G P
Sbjct: 264 PGPKGFPGISGPPGFPGLGTTGEKGEKGIPGLPGPRGPMGSEGVHGPPGQQGKKGTLGFP 323
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
G + + G LPGP D+ G S P PG P L G L GPS
Sbjct: 324 GLNGFQGIEGQKGDIGLPGPDVFIDIDGAVISGNPGDPGVPGLPGLKGDEGIQGLRGPSG 383
Query: 269 APDLPGPSSAPDLPGPSSAPDLPG----PSSTVLGS 300
P LP S P GP P L G P T +G+
Sbjct: 384 VPGLPALSGVPGALGPQGFPGLKGDQGNPGRTTIGA 419
Score = 38.1 bits (87), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 55/154 (35%), Gaps = 6/154 (3%)
Query: 57 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 116
PGP P + GP P PG + + G P LPGP G P G
Sbjct: 264 PGPKGFPGISGP---PGFPGLGTTGE-KGEKGIPGLPGPRGPMGSEGVHGPPGQQGKKGT 319
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLP 174
PG + + G LPGP D+ G S P PG P L G L
Sbjct: 320 LGFPGLNGFQGIEGQKGDIGLPGPDVFIDIDGAVISGNPGDPGVPGLPGLKGDEGIQGLR 379
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
GPS P LP S P GP P L G P
Sbjct: 380 GPSGVPGLPALSGVPGALGPQGFPGLKGDQGNPG 413
>gi|301786543|ref|XP_002928686.1| PREDICTED: collagen alpha-1(X) chain-like [Ailuropoda melanoleuca]
gi|281340789|gb|EFB16373.1| hypothetical protein PANDA_018678 [Ailuropoda melanoleuca]
Length = 674
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 80/200 (40%), Gaps = 16/200 (8%)
Query: 66 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
PG + AP PG P G AP + GP AP G P L G LPG A
Sbjct: 266 PGATGAPGQPG---IPGTKGHPGAPGIAGPPGAPSF-GKPGLPGLKGQRGPIGLPGSPGA 321
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
GP+ P PG + P GP +PG +PGP GP+ P G
Sbjct: 322 KGEQGPAGHPGQPGLTGPPGNIGPQGPKGMPGNQG---IPGPKGEMGPVGPAGHPGAKGE 378
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
+ L G P PG + GP P LPGP + GP P L GP+ A +
Sbjct: 379 RGSSGLDGKPGYPGEPGSN------GPKGNPGLPGPKGDAGVRGPPGLPGLVGPAGAKGM 432
Query: 246 PGPSSAPDLPGPSSAPDLPG 265
PG S GP AP +PG
Sbjct: 433 PGHSGE---TGPRGAPGIPG 449
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 77/194 (39%), Gaps = 14/194 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLPGP 77
T P +P +PG P PG + P P G P L G LPG A GP
Sbjct: 268 ATGAPGQPGIPGTKGHPGAPGIAGPPGAPSFGKPGLPGLKGQRGPIGLPGSPGAKGEQGP 327
Query: 78 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 137
+ P PG + P GP +PG +PGP GP+ P G + L
Sbjct: 328 AGHPGQPGLTGPPGNIGPQGPKGMPGNQG---IPGPKGEMGPVGPAGHPGAKGERGSSGL 384
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
G P PG + GP P LPGP + GP P L GP+ A +PG S
Sbjct: 385 DGKPGYPGEPGSN------GPKGNPGLPGPKGDAGVRGPPGLPGLVGPAGAKGMPGHSGE 438
Query: 198 PDLPGPSSAPDLPG 211
GP AP +PG
Sbjct: 439 ---TGPRGAPGIPG 449
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 110/314 (35%), Gaps = 64/314 (20%)
Query: 24 PLEPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLP--- 75
P +P GP+ AP LPG AP +PG AP G + AP PG P
Sbjct: 155 PGKPGQQGPAGAPGPRGLPGEKGAPGVPG---APGQKGEAGYGAPGRPGEKGLPGPQGPM 211
Query: 76 -----------GPSSAPDLPG--------------------------PSSAPDLPGPSSA 98
G + P PG PG + A
Sbjct: 212 GPPGPPGVGERGENGFPGQPGIKGDRGFPGERGPAGPPGPQGPPGERGPEGIGKPGATGA 271
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 158
P PG P G AP + GP AP G P L G LPG A GP
Sbjct: 272 PGQPG---IPGTKGHPGAPGIAGPPGAPSF-GKPGLPGLKGQRGPIGLPGSPGAKGEQGP 327
Query: 159 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
+ P PG + P GP +PG +PGP GP+ P G + L
Sbjct: 328 AGHPGQPGLTGPPGNIGPQGPKGMPGNQG---IPGPKGEMGPVGPAGHPGAKGERGSSGL 384
Query: 219 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 278
G P PG + GP P LPGP + GP P L GP+ A +PG S
Sbjct: 385 DGKPGYPGEPGSN------GPKGNPGLPGPKGDAGVRGPPGLPGLVGPAGAKGMPGHSGE 438
Query: 279 PDLPGPSSAPDLPG 292
GP AP +PG
Sbjct: 439 ---TGPRGAPGIPG 449
>gi|332226104|ref|XP_003262229.1| PREDICTED: collagen alpha-6(IV) chain isoform 1 [Nomascus leucogenys]
Length = 1687
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 87/248 (35%), Gaps = 12/248 (4%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
+ V+ +P P G P L G S PG G +P LPG S P L
Sbjct: 1005 ITKGVSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLK 1064
Query: 76 GPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
G + PGP P G G PG G S LPG
Sbjct: 1065 GDNGQTAEISGSPGPKGQPGESGFKGTKGKDGLIGNIGFPGNKGEDGKVGVSGDVGLPGA 1124
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1125 PGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGT 1184
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
PGPS +PGP+ LPGP PG AP PG G P L GP+
Sbjct: 1185 PGPSIT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDQGFPGLQGPAG 1237
Query: 251 APDLPGPS 258
P PG S
Sbjct: 1238 LPGAPGIS 1245
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 101/293 (34%), Gaps = 29/293 (9%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 657 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGNKGEPGSPGLVHLPELPGFPGPR 713
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 714 GEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 767
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
G S P L G P L GP G +P PG P PG S + G
Sbjct: 768 DKGFLGDSGLPGLKGVHGKPGLLGPK------GERGSPGTPGQVGQPGTPGSSGPYGIKG 821
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
S P AP PG S P G PG LPG P PG
Sbjct: 822 KSGLP------GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGLVGLKG 875
Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
PG LP PS G PG P +PG +PG + +
Sbjct: 876 SPGSPGVAGLPAPSGPKGEKGSVGFVGFPGIPGLPGIPGTRGLKGIPGSTGKM 928
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 93/263 (35%), Gaps = 32/263 (12%)
Query: 41 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 100
P P GPS P PG PGP + LPG P G P PG P+
Sbjct: 652 PCIIPGSYGPSGFPGTPG------FPGPKGSRGLPGTPGQPGSSGNKGEPGSPGLVHLPE 705
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPS 159
LPG PGP LPG P LPG LPG +P LPG A D+ G
Sbjct: 706 LPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAE 753
Query: 160 SA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGP 212
+ L G + G S P L G P L GP +P PG P PG
Sbjct: 754 NGAPGEQGLQGLTGDKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGS 813
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
S + G S P AP PG S P G PG LPG P
Sbjct: 814 SGPYGIKGKSGLP------GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGN 867
Query: 273 PGPSSAPDLPGPSSAPDLPGPSS 295
PG PG LP PS
Sbjct: 868 PGLVGLKGSPGSPGVAGLPAPSG 890
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 56/156 (35%), Gaps = 11/156 (7%)
Query: 156 PGPSSAPDLPGPSSAPDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
PGP P + GP P L G P LPGP G P G P
Sbjct: 263 PGPKGFPGISGPPGFPGLGTTGEKGEKGIPGLPGPRGPMGSEGVHGPPGQQGKKGTLGFP 322
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
G + + G LPGP D+ G S P PG P L G L GPS
Sbjct: 323 GLNGFQGIEGQKGDIGLPGPDVFIDIDGAVISGNPGDPGVPGLPGLKGDEGIQGLRGPSG 382
Query: 269 APDLPGPSSAPDLPGPSSAPDLPG----PSSTVLGS 300
P LP S P GP P L G P T +G+
Sbjct: 383 VPGLPALSGVPGALGPQGFPGLKGDQGNPGRTTIGA 418
>gi|953173|emb|CAA80537.1| a2(IV) collagen [Caenorhabditis elegans]
Length = 1759
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 107/300 (35%), Gaps = 49/300 (16%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+PG +P PG LPG P L G P PG LPG S P PG
Sbjct: 822 VPGQPGSPGFPGLKGDAGLPGLPGTPGLEGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKG 881
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
LPG +PG +P PG P +PG LPG L G AP G
Sbjct: 882 DAGLPG------VPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGAP---G 932
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPG---------------PSSAPDLPGPSSAPDLP- 192
S AP LPG P + G + P +PG P P +PG P +
Sbjct: 933 QSGAPGLPGAPGYPGMKGNAGIPGVPGFKGDGGLPGLPGLNGPKGEPGVPGMPGTPGMKG 992
Query: 193 -----------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--- 238
G S P + G LPG GP++ G + P PG
Sbjct: 993 NGGLPGLPGRDGLSGVPGMKGDRGFNGLPGEKGEA---GPAARDGQKGDAGLPGQPGLRG 1049
Query: 239 ---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPG 292
PS P +PG LPG P PG P +PG + AP PG P PG
Sbjct: 1050 PQGPSGLPGVPGFKGETGLPG-YGQPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPG 1108
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 113/311 (36%), Gaps = 53/311 (17%)
Query: 27 PDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +PGP P LPG + PG P PG P L G + P LPG P L
Sbjct: 794 PGIPGPKGDVGNPGLPGLNGQKGEPG-VGVPGQPGSPGFPGLKGDAGLPGLPG---TPGL 849
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGP 140
G P PG LPG S P PG + P +PG +P PG P +PG
Sbjct: 850 EGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKGDAGLPGVPGREGSPGFPGQDGLPGVPGM 909
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------- 193
LPG L G AP G S AP LPG P + G + P +PG
Sbjct: 910 KGEDGLPGLPGVTGLKGDLGAP---GQSGAPGLPGAPGYPGMKGNAGIPGVPGFKGDGGL 966
Query: 194 --------PSSAPDLPGPSSAPDLP------------GPSSAPDLPGPSSAPDLPG---- 229
P P +PG P + G S P + G LPG
Sbjct: 967 PGLPGLNGPKGEPGVPGMPGTPGMKGNGGLPGLPGRDGLSGVPGMKGDRGFNGLPGEKGE 1026
Query: 230 --PSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
P++ G + P PG PS P +PG LPG P PG P +
Sbjct: 1027 AGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLPG-YGQPGQPGEKGLPGI 1085
Query: 282 PGPSSAPDLPG 292
PG + PG
Sbjct: 1086 PGKAGRQGAPG 1096
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 94/259 (36%), Gaps = 34/259 (13%)
Query: 22 ERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------- 74
E + P PG P LPG PG PG P + G S P
Sbjct: 720 ENQVNPAPPGQPGLPGLPGTKGEGGYPGRPGEVGQPGFPGLPGMKGDSGLPGPPGLPGHP 779
Query: 75 -----PGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
G P LPG +PGP P LPG + PG P PG P
Sbjct: 780 GVPGDKGFGGVPGLPG------IPGPKGDVGNPGLPGLNGQKGEPG-VGVPGQPGSPGFP 832
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
L G + P LPG P L G P PG LPG S P PG LPG
Sbjct: 833 GLKGDAGLPGLPG---TPGLEGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKGDAGLPG-- 887
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
+PG +P PG P +PG LPG L G A PG S AP LP
Sbjct: 888 ----VPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGA---PGQSGAPGLP 940
Query: 247 GPSSAPDLPGPSSAPDLPG 265
G P + G + P +PG
Sbjct: 941 GAPGYPGMKGNAGIPGVPG 959
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 101/295 (34%), Gaps = 22/295 (7%)
Query: 26 EPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PG P +PG + AP PG P PG PG P G P
Sbjct: 1073 QPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPG 1132
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDL-- 137
G PG S AP L G P + G P +PG PG
Sbjct: 1133 QKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDKGQGGLPGIPGDRGMDGYPGQKGENGYPG 1192
Query: 138 ----------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
G + P PG +P PG P +PG PG LPG S
Sbjct: 1193 QPGLPGLGGEKGFAGTPGFPGLKGSPGYPGQDGLPGIPGLKGDSGFPGQPGQEGLPGLSG 1252
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
+ G P PG S GP AP L G P LPG L G AP L G
Sbjct: 1253 EKGMGGLPGMPGQPG-QSIAGPVGPPGAPGLQGKDGFPGLPGQKGESGLSGLPGAPGLKG 1311
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL 302
S P PG DL G + P G P +PG P +PG V G+ L
Sbjct: 1312 ESGMPGFPGAKG--DL-GANGIPGKRGEDGLPGVPGRDGQPGIPGLKGEVGGAGL 1363
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 74/214 (34%), Gaps = 23/214 (10%)
Query: 69 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 128
+ P PG +P PG P +PG PG LPG S + G P
Sbjct: 1206 AGTPGFPGLKGSPGYPGQDGLPGIPGLKGDSGFPGQPGQEGLPGLSGEKGMGGLPGMPGQ 1265
Query: 129 PGPS--------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
PG S AP L G P LPG L G AP L G S P PG
Sbjct: 1266 PGQSIAGPVGPPGAPGLQGKDGFPGLPGQKGESGLSGLPGAPGLKGESGMPGFPGAKG-- 1323
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
DL G + P G P +PG P +PG L G LPG P +PG
Sbjct: 1324 DL-GANGIPGKRGEDGLPGVPGRDGQPGIPG------LKGEVGGAGLPGQPGFPGIPG-- 1374
Query: 241 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
L G P PG PG P G
Sbjct: 1375 ----LKGEGGLPGFPGAKGEAGFPGTPGVPGYAG 1404
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 74/211 (35%), Gaps = 13/211 (6%)
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPS 141
GPS P +PG LPG P PG P +PG + AP PG P PG
Sbjct: 1052 GPSGLPGVPGFKGETGLPG-YGQPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMK 1110
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
PG P G P G PG S AP L G P + G LP
Sbjct: 1111 GESGYPGQDGLPGRDGLPGVPGQKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDKGQGGLP 1170
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
G P G P G + P PG G + P PG +P PG P
Sbjct: 1171 G---IPGDRGMDGYPGQKGENGYPGQPGLPGLGGEKGFAGTPGFPGLKGSPGYPGQDGLP 1227
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG L G S P PG P L G
Sbjct: 1228 GIPG------LKGDSGFPGQPGQEGLPGLSG 1252
>gi|426257737|ref|XP_004022479.1| PREDICTED: collagen alpha-6(IV) chain [Ovis aries]
Length = 1688
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 83/237 (35%), Gaps = 6/237 (2%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
L ++ RP P G P L G PG G S AP LPG S P L
Sbjct: 1006 LIKGLSGRPGPPGSTGLRGLPGLKGHPGITGFPGIRGESGSQGLSGAPGLPGASGLPGLK 1065
Query: 76 GPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
G PGP P PG GP PG G S LPG
Sbjct: 1066 GDQGQTLGISGSPGPKGQPGEPGFKGVKGKEGPVGDVGFPGNKGEDGKAGISGDAGLPGS 1125
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
P + G P LPG GP P L G P LPG LPG
Sbjct: 1126 LGLPGVAGMRGNPGLPGSPGHSGATGPLGPPGLIGTKGFPGLPGLHGLNGLPGTKGTRGT 1185
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
PGPS +PGP+ P G +P + G P + GP + PG A LPG
Sbjct: 1186 PGPSIT-GVPGPAGLPGPKGEKGSPGIGIGAPGKPGIRGPKGSQGFPGLQGAVGLPG 1241
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 77/202 (38%), Gaps = 30/202 (14%)
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
A PG P LPG GP P PGP P G P PGP P
Sbjct: 590 GAQGFPGEKGLPGLPGEKGHAGPTGPPGIGLPGAPGPRGLPGDKGVDGLPGQPGPRGVPG 649
Query: 191 L------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
+ PGP LPG AP PGP A LPG P L G P PG P+
Sbjct: 650 ITLPCIIPGPYGPSGLPG---APGFPGPKGARGLPGAPGQPGLRGNKGDPGSPGLVHLPE 706
Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST---VLGSY 301
LPG PGP LPG P LPG LPG +P LPG +LG+
Sbjct: 707 LPG------FPGPHGEKGLPG---FPGLPGKDG---LPGKVGSPGLPGSKGAPGDILGAE 754
Query: 302 LGEAGHQKSPKGLEPKPAQISF 323
G G Q GL+ P F
Sbjct: 755 NGAPGEQ----GLQGLPGDRGF 772
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 58/142 (40%), Gaps = 21/142 (14%)
Query: 36 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------PGPSSAPDLPGPSSAPDLPGPSSA 89
P PGP P G P PGP P + PGP LPG AP PGP A
Sbjct: 621 PGAPGPRGLPGDKGVDGLPGQPGPRGVPGITLPCIIPGPYGPSGLPG---APGFPGPKGA 677
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
LPG P L G P PG P+LPG PGP LPG P LPG
Sbjct: 678 RGLPGAPGQPGLRGNKGDPGSPGLVHLPELPG------FPGPHGEKGLPG---FPGLPGK 728
Query: 150 SSAPDLPGPSSAPDLPGPSSAP 171
LPG +P LPG AP
Sbjct: 729 DG---LPGKVGSPGLPGSKGAP 747
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 69/193 (35%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG + LPG P + G P + G S + L S AP LPG S
Sbjct: 1007 IKGLSGRPGPPGSTGLRGLPGLKGHPGITG---FPGIRGESGSQGL---SGAPGLPGASG 1060
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P L G PGP P PG GP PG G S
Sbjct: 1061 LPGLKGDQGQTLGISGSPGPKGQPGEPGFKGVKGKEGPVGDVGFPGNKGEDGKAGISGDA 1120
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
LPG P + G P LPG GP P L G P LPG LPG
Sbjct: 1121 GLPGSLGLPGVAGMRGNPGLPGSPGHSGATGPLGPPGLIGTKGFPGLPGLHGLNGLPGTK 1180
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1181 GTRGTPGPSITGV 1193
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 99/330 (30%), Positives = 109/330 (33%), Gaps = 80/330 (24%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------PGPSSAPDLPGPSSAPDLPGPSSA 80
P PGP P G P PGP P + PGP LPG AP PGP A
Sbjct: 621 PGAPGPRGLPGDKGVDGLPGQPGPRGVPGITLPCIIPGPYGPSGLPG---APGFPGPKGA 677
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
LPG P L G P PG P+LPG PGP LPG P LPG
Sbjct: 678 RGLPGAPGQPGLRGNKGDPGSPGLVHLPELPG------FPGPHGEKGLPG---FPGLPGK 728
Query: 141 SSAPDLPGPSSAPDLPGPSSAPD--------LPGPSSAPDLPG----------------- 175
LPG +P LPG AP PG LPG
Sbjct: 729 DG---LPGKVGSPGLPGSKGAPGDILGAENGAPGEQGLQGLPGDRGFPGDSGLPGLKGLL 785
Query: 176 -------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
P PG PGP L G P L GP P PG S P
Sbjct: 786 GKSGLLGPKGERGSPGIPGRVGQPGPPGPSGLFGIKGKPGLRGP---PGFPGISGHPGKK 842
Query: 229 GPSSAPDLPGPSSAP---------------------DLPGPSSAPDLPGPSSAPDLPGPS 267
GP LP + LPG + P LPG G +
Sbjct: 843 GPRGEIGLPASAGKRGLPGLKGLPGPPGPIGFLGNSGLPGATGLPGLPGLKGEKGSAGLT 902
Query: 268 SAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
P +PG P +PG S +PG + V
Sbjct: 903 GFPGIPG---LPGIPGASGLKGIPGSTGRV 929
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 125/467 (26%), Positives = 157/467 (33%), Gaps = 90/467 (19%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P + G P LPG GP P L G P LPG LPG PGP
Sbjct: 1129 PGVAGMRGNPGLPGSPGHSGATGPLGPPGLIGTKGFPGLPGLHGLNGLPGTKGTRGTPGP 1188
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPG------ 139
S +PGP+ P G +P + G P + GP + PG A LPG
Sbjct: 1189 SIT-GVPGPAGLPGPKGEKGSPGIGIGAPGKPGIRGPKGSQGFPGLQGAVGLPGALGLSL 1247
Query: 140 PSSAPDLPGPSSAPDLPG---------------PSSAPDLPGPSSAPDLP---GPSSAPD 181
PS PG P L G PSS PG S P +P GP
Sbjct: 1248 PSVIEGQPGDPGRPGLDGERGRPGPPGPPGPPGPSSDQGDPGDSGFPGIPGPQGPKGDQG 1307
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPD------------LPGPSSAPDLPGPSSAP---- 225
+PG S P G PG P + G + L GP AP
Sbjct: 1308 IPGFSGLPGELGLKGMRGEPGFMGTPGKVGPPGDPGLPGMKGKAGPRGLSGPRGAPGHTP 1367
Query: 226 ------------DLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA- 269
LPG P L PG L G P +PG LPGP A
Sbjct: 1368 IAEAIQAPPGPMGLPGIDGIPGLMGDPGVQGPVGLQGSKGLPGIPGKDGTNGLPGPPGAL 1427
Query: 270 -----PDLPGP---SSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQK---SPKGLEPKP 318
P L GP AP PGP +PG S V + + + ++ P G+
Sbjct: 1428 GDPGLPGLQGPPGFEGAPGKPGPFGRAGVPGQSLRVGYTLVKHSQSEQVPLCPSGMSQLW 1487
Query: 319 AQIS--FVLNIFANFHQTLRFLHFSCTSLVVTRATVVKLPLYILTVEDDTVILLFIETFI 376
S FV +Q L F SC T +P V + + +
Sbjct: 1488 VGYSLLFVEGQEKAHNQDLGFAG-SCLPRFST------MPFIYCNVNE-------VCHYA 1533
Query: 377 QLPQQAYTTNSFA--PMDPSKDDTVILLFIKTC--IQLPQQAYTTNS 419
+ ++Y ++ A PM P T I +I C + P QA +S
Sbjct: 1534 RRNDKSYWLSTTAPIPMMPV-GQTQIPQYISRCSVCEAPSQAIAVHS 1579
>gi|397497892|ref|XP_003819737.1| PREDICTED: collagen alpha-6(IV) chain isoform 2 [Pan paniscus]
Length = 1688
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 86/244 (35%), Gaps = 12/244 (4%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
V+ +P P G P L G S PG G +P LPG S P L G +
Sbjct: 1010 VSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLKGDNG 1069
Query: 80 AP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
PGP P G G PG G S LPG P
Sbjct: 1070 QTVEISSSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFP 1129
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
+ G P LPG S GP +P L GP P PG LPG PGPS
Sbjct: 1130 GVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTPGPS 1189
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
+PGP+ LPGP PG AP PG G P L GP+ P
Sbjct: 1190 IT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAGLPGA 1242
Query: 255 PGPS 258
PG S
Sbjct: 1243 PGIS 1246
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 106/289 (36%), Gaps = 35/289 (12%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPS---SAPDLPGPSSA 80
P LPGP LPG LPG P G P P GPS P PGP +
Sbjct: 621 PGLPGPRG---LPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGS 677
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
LPG P G P PG P+LPG PGP LPG P LPG
Sbjct: 678 RGLPGTPGQPGSSGTKGEPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGK 728
Query: 141 SSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPS 195
LPG +P LPG A D+ G + L G + G S P L G
Sbjct: 729 DG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVH 785
Query: 196 SAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPS 249
P L GP +P PG P PG S + G S AP PG S P G
Sbjct: 786 GKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTR 845
Query: 250 SAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
PG LPG P L G +P PG + P L GP
Sbjct: 846 GKKGPPGSIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKG 894
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 107/296 (36%), Gaps = 35/296 (11%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 658 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGTKGEPGSPGLVHLPELPGFPGPR 714
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 715 GEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 768
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
G S P L G P L GP +P PG P PG S + G S P
Sbjct: 769 HKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLP- 827
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 828 -----GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPG------LVGLKG 876
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+P PG + P L GP G P +PG P +PG +PG + +
Sbjct: 877 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGKM 929
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 70/193 (36%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG LPG + + G P +PG S + + G +P LPG S
Sbjct: 1007 IKGVSGKPGPPGFMGIRGLPGLKGSSGITG---FPGMPGESGSQGIRG---SPGLPGASG 1060
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P L G + PGP P G G PG G S
Sbjct: 1061 LPGLKGDNGQTVEISSSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDV 1120
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
LPG P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1121 GLPGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTK 1180
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1181 GTHGTPGPSITGV 1193
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 68/176 (38%), Gaps = 28/176 (15%)
Query: 118 DLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
PG P LPG P LPG + P LPGP LPG LPG P
Sbjct: 593 GFPGEKGLPGLPGEKGHLGPPGLPG-NGLPGLPGPRG---LPGDKGKDGLPGQQGLPGSK 648
Query: 175 G---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
G P P GPS P PG PGP + LPG P G P PG
Sbjct: 649 GITLPCIIPGSYGPSGFPGTPG------FPGPKGSRGLPGTPGQPGSSGTKGEPGSPGLV 702
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 287
P+LPG PGP LPG P LPG LPG +P LPG A
Sbjct: 703 HLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGA 746
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 99/277 (35%), Gaps = 32/277 (11%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPS 78
+ P P PGP LPG P LPG LPG +P LPG A D+ G
Sbjct: 701 LVHLPELPGFPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAE 754
Query: 79 SA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGP 131
+ L G + G S P L G P L GP +P PG P PG
Sbjct: 755 NGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGS 814
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
S + G S P AP PG S P G PG LPG P
Sbjct: 815 SGPYGIKGKSGLP------GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGN 868
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
PG L G +P PG + P L GP G P +PG P +PG
Sbjct: 869 PG------LVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGL 919
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
+PG + GPS+ PG PGP P
Sbjct: 920 KGIPGSTGK---MGPSARAGTPGEKGDRGNPGPVGIP 953
>gi|840708|dbj|BAA09334.1| trans-sialidase [Trypanosoma cruzi]
Length = 1060
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 116/291 (39%), Gaps = 48/291 (16%)
Query: 34 SAPDLPGPSSAPDLPGPSSAPDLP------GPSSAPDLPGPSSAPDLP------GPSSAP 81
SAP G S P PG SSA P G S P P S+A P G S P
Sbjct: 714 SAPGDNGAHSTPSTPGDSSAHSTPSTPADNGAHSTPSAPADSNAHSTPSTPADNGAHSTP 773
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP------GPSSAPDLPGPSSA- 134
P + A P S P G S P PG SSA P G S P P S+A
Sbjct: 774 STPADNGAHSTP---STPGDNGAHSTPSTPGDSSAHSTPSTPADNGAHSTPSAPADSNAH 830
Query: 135 --PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
P PG + A P SAP S P P SSA P SAP G S P P
Sbjct: 831 STPSTPGDNGAHSTP---SAPADSNAHSTPSTPADSSAHSTP---SAPGDNGAHSTPSAP 884
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSA---PDLPGPSSA---P 243
SSA P SAP G S P P G S P PG S+A P P SSA P
Sbjct: 885 ADSSAHSTP---SAPGDNGAHSTPSAPADNGAHSTPSAPGDSNAHSTPSTPADSSAHSTP 941
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLP 291
P SSA P SAP G S P P SSA P +PG SSA P
Sbjct: 942 STPADSSAHSTP---SAPGDNGAHSTPSAPADSSAHSTPSIPGDSSAHSTP 989
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 124/313 (39%), Gaps = 60/313 (19%)
Query: 31 GPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP--- 84
G S P P SSA P P SSA P SAP G S P PG SSA P
Sbjct: 684 GAHSTPSTPADSSAHSTPSTPADSSAHSTP---SAPGDNGAHSTPSTPGDSSAHSTPSTP 740
Query: 85 ---GPSSAPDLPGPSSAPDLP------GPSSAPDLP---GPSSAPDLP---GPSSAPDLP 129
G S P P S+A P G S P P G S P P G S P P
Sbjct: 741 ADNGAHSTPSAPADSNAHSTPSTPADNGAHSTPSTPADNGAHSTPSTPGDNGAHSTPSTP 800
Query: 130 GPSSAPDLP------GPSSAPDLPGPSSAPDLP------GPSSAPDLPGPSSA---PDLP 174
G SSA P G S P P S+A P G S P P S+A P P
Sbjct: 801 GDSSAHSTPSTPADNGAHSTPSAPADSNAHSTPSTPGDNGAHSTPSAPADSNAHSTPSTP 860
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPS 231
SSA P SAP G S P P SSA P SAP G S P P G
Sbjct: 861 ADSSAHSTP---SAPGDNGAHSTPSAPADSSAHSTP---SAPGDNGAHSTPSAPADNGAH 914
Query: 232 SAPDLPGPSSA---PDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
S P PG S+A P P SSA P P SSA P SAP G S P P S
Sbjct: 915 STPSAPGDSNAHSTPSTPADSSAHSTPSTPADSSAHSTP---SAPGDNGAHSTPSAPADS 971
Query: 286 SA---PDLPGPSS 295
SA P +PG SS
Sbjct: 972 SAHSTPSIPGDSS 984
>gi|354497989|ref|XP_003511099.1| PREDICTED: collagen alpha-1(IV) chain [Cricetulus griseus]
Length = 1623
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 102/306 (33%), Gaps = 61/306 (19%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P L G S P LPG P PG LPG + G P PGP+ P LPG
Sbjct: 805 PGLTGQSGLPGLPGQQGTPGFPG------LPGVKGEMGVMGTPGQPGSPGPAGTPGLPGE 858
Query: 87 SSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDL--------------------- 119
LPG P P G P +PG D+
Sbjct: 859 KGDHGLPGSSGPRGDPGFKGDKGDVGLPGMPGSMDHVDMGSMKGQKGDQGEKGQIGPTGD 918
Query: 120 ------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------------ 161
PG P G + P PGP P L G AP LPGP +
Sbjct: 919 KGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLSGTPGAPGLPGPKGSVGGMGMPGLPGQ 978
Query: 162 ---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
P +PG P L G A G S P + P PG L G +P
Sbjct: 979 KGVPGIPGQQGVPGLRGEKGAKGEKGQSGLPGI----GIPGRPGDKGDQGLTGFPGSPGE 1034
Query: 219 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 278
G + PG P PGP +P + G +P LPG LPG P + G
Sbjct: 1035 KGEKGSAGTPG---MPGSPGPKGSPGIIGHPGSPGLPGEKGDKGLPGLDGIPGVKGEVGL 1091
Query: 279 PDLPGP 284
P PGP
Sbjct: 1092 PGTPGP 1097
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 85/236 (36%), Gaps = 24/236 (10%)
Query: 55 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 114
D+PGP G P L G S P LPG P PG LPG + G
Sbjct: 791 DMPGPKGDK---GSQGLPGLTGQSGLPGLPGQQGTPGFPG------LPGVKGEMGVMGTP 841
Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
P PGP+ P LPG LPG S GP P G LPG + D
Sbjct: 842 GQPGSPGPAGTPGLPGEKGDHGLPGSS------GPRGDPGFKGDKGDVGLPGMPGSMDHV 895
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS 231
S G GP+ G P +PG + P PGP P L G
Sbjct: 896 DMGSMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLSGTP 955
Query: 232 SAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
AP LPGP + P LPG P +PG P L G A G S P +
Sbjct: 956 GAPGLPGPKGSVGGMGMPGLPGQKGVPGIPGQQGVPGLRGEKGAKGEKGQSGLPGI 1011
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 70/192 (36%), Gaps = 18/192 (9%)
Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 168
D+PGP G P L G S P LPG P PG LPG + G
Sbjct: 791 DMPGPKGDK---GSQGLPGLTGQSGLPGLPGQQGTPGFPG------LPGVKGEMGVMGTP 841
Query: 169 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
P PGP+ P LPG LPG S GP P G LPG + D
Sbjct: 842 GQPGSPGPAGTPGLPGEKGDHGLPGSS------GPRGDPGFKGDKGDVGLPGMPGSMDHV 895
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS 285
S G GP+ G P +PG + P PGP P L G
Sbjct: 896 DMGSMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLSGTP 955
Query: 286 SAPDLPGPSSTV 297
AP LPGP +V
Sbjct: 956 GAPGLPGPKGSV 967
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 101/357 (28%), Positives = 118/357 (33%), Gaps = 86/357 (24%)
Query: 21 TERPLEPDLPGPSSAPDLPGPSSAPD----LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
T + PG +P LPGP LPGP A LPG +P PGP PG
Sbjct: 568 TGEKGQAGFPGSPGSPGLPGPKGEAGKVVPLPGPPGAAGLPG---SPGFPGPQGDRGFPG 624
Query: 77 PSSAPDLPGPSSA-----------------PDLPGPSS---APDLPGPSSAPDLPGPSSA 116
P +PG A LPG + +P PG + P PGP
Sbjct: 625 TPGRPGIPGEKGAVGQPGIGFPGPPGPKGVDGLPGDTGLPGSPGRPGFNGLPGNPGPQGQ 684
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
PG LPG P LPG P G P PG PG PGP
Sbjct: 685 KGEPGIG----LPGLKGQPGLPGIPGTPGEKGNIGGPGFPGEHGIVGPPGLQGIRGDPGP 740
Query: 177 --------------------------------SSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
S P + G P PG D+PGP
Sbjct: 741 PGVQGPAGPPGVPGVGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGL----DMPGPK 796
Query: 205 S---APDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
+ LPG + P LPG P PG LPG + G P PGP+
Sbjct: 797 GDKGSQGLPGLTGQSGLPGLPGQQGTPGFPG------LPGVKGEMGVMGTPGQPGSPGPA 850
Query: 259 SAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSTV----LGSYLGEAGHQ 308
P LPG LP GP P G LPG ++ +GS G+ G Q
Sbjct: 851 GTPGLPGEKGDHGLPGSSGPRGDPGFKGDKGDVGLPGMPGSMDHVDMGSMKGQKGDQ 907
>gi|71000000|ref|XP_754717.1| cell surface protein [Aspergillus fumigatus Af293]
gi|66852354|gb|EAL92679.1| cell surface protein, putative [Aspergillus fumigatus Af293]
Length = 430
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 79/187 (42%), Gaps = 6/187 (3%)
Query: 97 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 156
S P +PG S P P P +PG S P P P +PG S P P P +P
Sbjct: 212 SQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVP 271
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
G P +PG SAP P P +PG S P P P +PG P +PG SAP
Sbjct: 272 G---QPSVPGQPSAPGQPSAPGQPSVPGQPSVPGQPSVPGQPSVPG---QPSVPGQPSAP 325
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 276
P P +PG S P P P +PG S P P P +PG S P+ P
Sbjct: 326 GQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSAPEQPSVPGQPSVPEQPSAP 385
Query: 277 SAPDLPG 283
P +PG
Sbjct: 386 EQPSVPG 392
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 85/197 (43%), Gaps = 15/197 (7%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +P +PG S P P P +PG S P P P +PG S P P P +
Sbjct: 211 PSQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSV 270
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
PG P +PG SAP P P +PG S P P P +PG P +PG SA
Sbjct: 271 PG---QPSVPGQPSAPGQPSAPGQPSVPGQPSVPGQPSVPGQPSVPG---QPSVPGQPSA 324
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
P P P +PG S P P P +PG P +PG SAP+ P +PG
Sbjct: 325 PGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPG---QPSVPGQPSAPE------QPSVPGQ 375
Query: 204 SSAPDLPGPSSAPDLPG 220
S P+ P P +PG
Sbjct: 376 PSVPEQPSAPEQPSVPG 392
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 84/196 (42%), Gaps = 15/196 (7%)
Query: 34 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 93
S P +PG S P P P +PG S P P P +PG S P P P +P
Sbjct: 212 SQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVP 271
Query: 94 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 153
G P +PG SAP P P +PG S P P P +PG P +PG SAP
Sbjct: 272 G---QPSVPGQPSAPGQPSAPGQPSVPGQPSVPGQPSVPGQPSVPG---QPSVPGQPSAP 325
Query: 154 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 213
P P +PG S P P P +PG P +PG SAP+ P +PG
Sbjct: 326 GQPSVPGQPSVPGQPSVPGQPSVPGQPSVPG---QPSVPGQPSAPE------QPSVPGQP 376
Query: 214 SAPDLPGPSSAPDLPG 229
S P+ P P +PG
Sbjct: 377 SVPEQPSAPEQPSVPG 392
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 84/196 (42%), Gaps = 15/196 (7%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
S P +PG S P P P +PG S P P P +PG S P P P +P
Sbjct: 212 SQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVP 271
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
G P +PG SAP P P +PG S P P P +PG P +PG SAP
Sbjct: 272 G---QPSVPGQPSAPGQPSAPGQPSVPGQPSVPGQPSVPGQPSVPG---QPSVPGQPSAP 325
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 222
P P +PG S P P P +PG P +PG SAP+ P +PG
Sbjct: 326 GQPSVPGQPSVPGQPSVPGQPSVPGQPSVPG---QPSVPGQPSAPE------QPSVPGQP 376
Query: 223 SAPDLPGPSSAPDLPG 238
S P+ P P +PG
Sbjct: 377 SVPEQPSAPEQPSVPG 392
>gi|17568911|ref|NP_510664.1| Protein LET-2, isoform a [Caenorhabditis elegans]
gi|351061152|emb|CCD68906.1| Protein LET-2, isoform a [Caenorhabditis elegans]
Length = 1758
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 107/300 (35%), Gaps = 49/300 (16%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+PG +P PG LPG P L G P PG LPG S P PG
Sbjct: 821 VPGQPGSPGFPGLKGDAGLPGLPGTPGLEGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKG 880
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
LPG +PG +P PG P +PG LPG L G AP G
Sbjct: 881 DAGLPG------VPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGAP---G 931
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPG---------------PSSAPDLPGPSSAPDLP- 192
S AP LPG P + G + P +PG P P +PG P +
Sbjct: 932 QSGAPGLPGAPGYPGMKGNAGIPGVPGFKGDGGLPGLPGLNGPKGEPGVPGMPGTPGMKG 991
Query: 193 -----------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--- 238
G S P + G LPG GP++ G + P PG
Sbjct: 992 NGGLPGLPGRDGLSGVPGMKGDRGFNGLPGEKGEA---GPAARDGQKGDAGLPGQPGLRG 1048
Query: 239 ---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPG 292
PS P +PG LPG P PG P +PG + AP PG P PG
Sbjct: 1049 PQGPSGLPGVPGFKGETGLPG-YGQPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPG 1107
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 113/311 (36%), Gaps = 53/311 (17%)
Query: 27 PDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +PGP P LPG + PG P PG P L G + P LPG P L
Sbjct: 793 PGIPGPKGDVGNPGLPGLNGQKGEPG-VGVPGQPGSPGFPGLKGDAGLPGLPG---TPGL 848
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGP 140
G P PG LPG S P PG + P +PG +P PG P +PG
Sbjct: 849 EGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKGDAGLPGVPGREGSPGFPGQDGLPGVPGM 908
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------- 193
LPG L G AP G S AP LPG P + G + P +PG
Sbjct: 909 KGEDGLPGLPGVTGLKGDLGAP---GQSGAPGLPGAPGYPGMKGNAGIPGVPGFKGDGGL 965
Query: 194 --------PSSAPDLPGPSSAPDLP------------GPSSAPDLPGPSSAPDLPG---- 229
P P +PG P + G S P + G LPG
Sbjct: 966 PGLPGLNGPKGEPGVPGMPGTPGMKGNGGLPGLPGRDGLSGVPGMKGDRGFNGLPGEKGE 1025
Query: 230 --PSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
P++ G + P PG PS P +PG LPG P PG P +
Sbjct: 1026 AGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLPG-YGQPGQPGEKGLPGI 1084
Query: 282 PGPSSAPDLPG 292
PG + PG
Sbjct: 1085 PGKAGRQGAPG 1095
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 94/259 (36%), Gaps = 34/259 (13%)
Query: 22 ERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------- 74
E + P PG P LPG PG PG P + G S P
Sbjct: 719 ENQVNPAPPGQPGLPGLPGTKGEGGYPGRPGEVGQPGFPGLPGMKGDSGLPGPPGLPGHP 778
Query: 75 -----PGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
G P LPG +PGP P LPG + PG P PG P
Sbjct: 779 GVPGDKGFGGVPGLPG------IPGPKGDVGNPGLPGLNGQKGEPG-VGVPGQPGSPGFP 831
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
L G + P LPG P L G P PG LPG S P PG LPG
Sbjct: 832 GLKGDAGLPGLPG---TPGLEGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKGDAGLPG-- 886
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
+PG +P PG P +PG LPG L G A PG S AP LP
Sbjct: 887 ----VPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGA---PGQSGAPGLP 939
Query: 247 GPSSAPDLPGPSSAPDLPG 265
G P + G + P +PG
Sbjct: 940 GAPGYPGMKGNAGIPGVPG 958
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 103/294 (35%), Gaps = 20/294 (6%)
Query: 26 EPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PG P +PG + AP PG P PG PG P G P
Sbjct: 1072 QPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPG 1131
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
G PG S AP L G P + G P +PG PG PG
Sbjct: 1132 QKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDKGQGGLPGIPGDRGMDGYPGQKGENGYPG 1191
Query: 140 PSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
P L G + P PG +P PG P +PG PG LPG S
Sbjct: 1192 QPGLPGLGGEKGFAGTPGFPGLKGSPGYPGQDGLPGIPGLKGDSGFPGQPGQEGLPGLSG 1251
Query: 197 APDLPGPSSAPDLPGPS--------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
+ G P PG S AP L G P LPG L G AP L G
Sbjct: 1252 EKGMGGLPGMPGQPGQSIAGPVGPPGAPGLQGKDGFPGLPGQKGESGLSGLPGAPGLKGE 1311
Query: 249 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL 302
S P PG DL G + P G P +PG P +PG V G+ L
Sbjct: 1312 SGMPGFPGAKG--DL-GANGIPGKRGEDGLPGVPGRDGQPGIPGLKGEVGGAGL 1362
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 99/301 (32%), Gaps = 38/301 (12%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPG-PSSAPDL-----PGP 77
P G AP PG P PG PG P LPG P DL PG
Sbjct: 1085 PGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPGQKGDLGQSGQPGL 1144
Query: 78 SSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDL------------PGP 122
S AP L G P + G P +PG PG G
Sbjct: 1145 SGAPGLDGQPGVPGIRGDKGQGGLPGIPGDRGMDGYPGQKGENGYPGQPGLPGLGGEKGF 1204
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
+ P PG +P PG P +PG PG LPG S + G P
Sbjct: 1205 AGTPGFPGLKGSPGYPGQDGLPGIPGLKGDSGFPGQPGQEGLPGLSGEKGMGGLPGMPGQ 1264
Query: 183 PGPS--------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--- 231
PG S AP L G P LPG L G AP L G S P PG
Sbjct: 1265 PGQSIAGPVGPPGAPGLQGKDGFPGLPGQKGESGLSGLPGAPGLKGESGMPGFPGAKGDL 1324
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
A +PG LPG P G P L G LPG P +PG LP
Sbjct: 1325 GANGIPGKRGEDGLPG---VPGRDGQPGIPGLKGEVGGAGLPGQPGFPGIPGLKGEGGLP 1381
Query: 292 G 292
G
Sbjct: 1382 G 1382
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 74/214 (34%), Gaps = 23/214 (10%)
Query: 69 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 128
+ P PG +P PG P +PG PG LPG S + G P
Sbjct: 1205 AGTPGFPGLKGSPGYPGQDGLPGIPGLKGDSGFPGQPGQEGLPGLSGEKGMGGLPGMPGQ 1264
Query: 129 PGPS--------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
PG S AP L G P LPG L G AP L G S P PG
Sbjct: 1265 PGQSIAGPVGPPGAPGLQGKDGFPGLPGQKGESGLSGLPGAPGLKGESGMPGFPGAKG-- 1322
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
DL G + P G P +PG P +PG L G LPG P +PG
Sbjct: 1323 DL-GANGIPGKRGEDGLPGVPGRDGQPGIPG------LKGEVGGAGLPGQPGFPGIPG-- 1373
Query: 241 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
L G P PG PG P G
Sbjct: 1374 ----LKGEGGLPGFPGAKGEAGFPGTPGVPGYAG 1403
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 74/211 (35%), Gaps = 13/211 (6%)
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPS 141
GPS P +PG LPG P PG P +PG + AP PG P PG
Sbjct: 1051 GPSGLPGVPGFKGETGLPG-YGQPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMK 1109
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
PG P G P G PG S AP L G P + G LP
Sbjct: 1110 GESGYPGQDGLPGRDGLPGVPGQKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDKGQGGLP 1169
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
G P G P G + P PG G + P PG +P PG P
Sbjct: 1170 G---IPGDRGMDGYPGQKGENGYPGQPGLPGLGGEKGFAGTPGFPGLKGSPGYPGQDGLP 1226
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG L G S P PG P L G
Sbjct: 1227 GIPG------LKGDSGFPGQPGQEGLPGLSG 1251
>gi|397497890|ref|XP_003819736.1| PREDICTED: collagen alpha-6(IV) chain isoform 1 [Pan paniscus]
Length = 1687
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 86/244 (35%), Gaps = 12/244 (4%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
V+ +P P G P L G S PG G +P LPG S P L G +
Sbjct: 1009 VSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLKGDNG 1068
Query: 80 AP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
PGP P G G PG G S LPG P
Sbjct: 1069 QTVEISSSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFP 1128
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
+ G P LPG S GP +P L GP P PG LPG PGPS
Sbjct: 1129 GVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTPGPS 1188
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
+PGP+ LPGP PG AP PG G P L GP+ P
Sbjct: 1189 IT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAGLPGA 1241
Query: 255 PGPS 258
PG S
Sbjct: 1242 PGIS 1245
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 106/289 (36%), Gaps = 35/289 (12%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPS---SAPDLPGPSSA 80
P LPGP LPG LPG P G P P GPS P PGP +
Sbjct: 620 PGLPGPRG---LPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGS 676
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
LPG P G P PG P+LPG PGP LPG P LPG
Sbjct: 677 RGLPGTPGQPGSSGTKGEPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGK 727
Query: 141 SSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPS 195
LPG +P LPG A D+ G + L G + G S P L G
Sbjct: 728 DG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVH 784
Query: 196 SAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPS 249
P L GP +P PG P PG S + G S AP PG S P G
Sbjct: 785 GKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTR 844
Query: 250 SAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
PG LPG P L G +P PG + P L GP
Sbjct: 845 GKKGPPGSIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKG 893
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 107/296 (36%), Gaps = 35/296 (11%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 657 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGTKGEPGSPGLVHLPELPGFPGPR 713
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 714 GEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 767
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
G S P L G P L GP +P PG P PG S + G S P
Sbjct: 768 HKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLP- 826
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 827 -----GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPG------LVGLKG 875
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+P PG + P L GP G P +PG P +PG +PG + +
Sbjct: 876 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGKM 928
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 70/193 (36%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG LPG + + G P +PG S + + G +P LPG S
Sbjct: 1006 IKGVSGKPGPPGFMGIRGLPGLKGSSGITG---FPGMPGESGSQGIRG---SPGLPGASG 1059
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P L G + PGP P G G PG G S
Sbjct: 1060 LPGLKGDNGQTVEISSSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDV 1119
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
LPG P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1120 GLPGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTK 1179
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1180 GTHGTPGPSITGV 1192
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 68/176 (38%), Gaps = 28/176 (15%)
Query: 118 DLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
PG P LPG P LPG + P LPGP LPG LPG P
Sbjct: 592 GFPGEKGLPGLPGEKGHLGPPGLPG-NGLPGLPGPRG---LPGDKGKDGLPGQQGLPGSK 647
Query: 175 G---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
G P P GPS P PG PGP + LPG P G P PG
Sbjct: 648 GITLPCIIPGSYGPSGFPGTPG------FPGPKGSRGLPGTPGQPGSSGTKGEPGSPGLV 701
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 287
P+LPG PGP LPG P LPG LPG +P LPG A
Sbjct: 702 HLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGA 745
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 99/277 (35%), Gaps = 32/277 (11%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPS 78
+ P P PGP LPG P LPG LPG +P LPG A D+ G
Sbjct: 700 LVHLPELPGFPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAE 753
Query: 79 SA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGP 131
+ L G + G S P L G P L GP +P PG P PG
Sbjct: 754 NGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGS 813
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
S + G S P AP PG S P G PG LPG P
Sbjct: 814 SGPYGIKGKSGLP------GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGN 867
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
PG L G +P PG + P L GP G P +PG P +PG
Sbjct: 868 PG------LVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGL 918
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
+PG + GPS+ PG PGP P
Sbjct: 919 KGIPGSTGK---MGPSARAGTPGEKGDRGNPGPVGIP 952
>gi|348522903|ref|XP_003448963.1| PREDICTED: collagen alpha-2(VIII) chain-like [Oreochromis
niloticus]
Length = 684
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 99/270 (36%), Gaps = 27/270 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
P LPG +P GP + PGPS PG P +PGP PG P G
Sbjct: 195 NPGLPGLRGSP---GPKGSIGPPGPSGI-GTPGLKGLPGVPGPKGDQGRPGDQGLPGDAG 250
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P LPGP PG P PGP PG P +PG ++ PGP+
Sbjct: 251 PPGLQGLPGPVGL-GKPGLDGLPGSPGPQGPKGEPGTRGTPGMPG-TNGYGKPGPNGLKG 308
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
G P LPG GP P L G P L GP LPG P G
Sbjct: 309 EKGHGGFPGLPGDKGEQGPIGPVGKPGLDGQPGPPGLQGPMG---LPGKHGIPGQKGELG 365
Query: 206 APDLP------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
P GPS P +PG +PGPS PGP GP P
Sbjct: 366 PRGPPGLPGLRGDQGPNGPSGKPGIPGEKG---IPGPSGLIGKPGPKGEAGYIGP---PG 419
Query: 254 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
PG + AP G S +PGP +PG
Sbjct: 420 NPGITGAPGPKGESGFMGVPGPRGQSGIPG 449
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 99/270 (36%), Gaps = 24/270 (8%)
Query: 33 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 92
+ P LPG +P GP + PGPS PG P +PGP PG P
Sbjct: 193 NGNPGLPGLRGSP---GPKGSIGPPGPSGI-GTPGLKGLPGVPGPKGDQGRPGDQGLPGD 248
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
GP LPGP PG P PGP PG P +PG ++ PGP+
Sbjct: 249 AGPPGLQGLPGPVGL-GKPGLDGLPGSPGPQGPKGEPGTRGTPGMPG-TNGYGKPGPNGL 306
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
G P LPG GP P L G P L GP LPG P G
Sbjct: 307 KGEKGHGGFPGLPGDKGEQGPIGPVGKPGLDGQPGPPGLQGPMG---LPGKHGIPGQKGE 363
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA--- 269
PG GP+ GPS P +PG +PGPS PGP
Sbjct: 364 LGPRGPPGLPGLRGDQGPN------GPSGKPGIPGEKG---IPGPSGLIGKPGPKGEAGY 414
Query: 270 ---PDLPGPSSAPDLPGPSSAPDLPGPSST 296
P PG + AP G S +PGP
Sbjct: 415 IGPPGNPGITGAPGPKGESGFMGVPGPRGQ 444
>gi|584868|sp|P17140.2|CO4A2_CAEEL RecName: Full=Collagen alpha-2(IV) chain; AltName: Full=Lethal
protein 2; Flags: Precursor
gi|953172|emb|CAA80536.1| a2(IV) collagen [Caenorhabditis elegans]
Length = 1758
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 107/300 (35%), Gaps = 49/300 (16%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+PG +P PG LPG P L G P PG LPG S P PG
Sbjct: 821 VPGQPGSPGFPGLKGDAGLPGLPGTPGLEGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKG 880
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
LPG +PG +P PG P +PG LPG L G AP G
Sbjct: 881 DAGLPG------VPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGAP---G 931
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPG---------------PSSAPDLPGPSSAPDLP- 192
S AP LPG P + G + P +PG P P +PG P +
Sbjct: 932 QSGAPGLPGAPGYPGMKGNAGIPGVPGFKGDGGLPGLPGLNGPKGEPGVPGMPGTPGMKG 991
Query: 193 -----------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--- 238
G S P + G LPG GP++ G + P PG
Sbjct: 992 NGGLPGLPGRDGLSGVPGMKGDRGFNGLPGEKGEA---GPAARDGQKGDAGLPGQPGLRG 1048
Query: 239 ---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPG 292
PS P +PG LPG P PG P +PG + AP PG P PG
Sbjct: 1049 PQGPSGLPGVPGFKGETGLPG-YGQPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPG 1107
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 113/311 (36%), Gaps = 53/311 (17%)
Query: 27 PDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +PGP P LPG + PG P PG P L G + P LPG P L
Sbjct: 793 PGIPGPKGDVGNPGLPGLNGQKGEPG-VGVPGQPGSPGFPGLKGDAGLPGLPG---TPGL 848
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGP 140
G P PG LPG S P PG + P +PG +P PG P +PG
Sbjct: 849 EGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKGDAGLPGVPGREGSPGFPGQDGLPGVPGM 908
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------- 193
LPG L G AP G S AP LPG P + G + P +PG
Sbjct: 909 KGEDGLPGLPGVTGLKGDLGAP---GQSGAPGLPGAPGYPGMKGNAGIPGVPGFKGDGGL 965
Query: 194 --------PSSAPDLPGPSSAPDLP------------GPSSAPDLPGPSSAPDLPG---- 229
P P +PG P + G S P + G LPG
Sbjct: 966 PGLPGLNGPKGEPGVPGMPGTPGMKGNGGLPGLPGRDGLSGVPGMKGDRGFNGLPGEKGE 1025
Query: 230 --PSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
P++ G + P PG PS P +PG LPG P PG P +
Sbjct: 1026 AGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLPG-YGQPGQPGEKGLPGI 1084
Query: 282 PGPSSAPDLPG 292
PG + PG
Sbjct: 1085 PGKAGRQGAPG 1095
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 94/259 (36%), Gaps = 34/259 (13%)
Query: 22 ERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------- 74
E + P PG P LPG PG PG P + G S P
Sbjct: 719 ENQVNPAPPGQPGLPGLPGTKGEGGYPGRPGEVGQPGFPGLPGMKGDSGLPGPPGLPGHP 778
Query: 75 -----PGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
G P LPG +PGP P LPG + PG P PG P
Sbjct: 779 GVPGDKGFGGVPGLPG------IPGPKGDVGNPGLPGLNGQKGEPG-VGVPGQPGSPGFP 831
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
L G + P LPG P L G P PG LPG S P PG LPG
Sbjct: 832 GLKGDAGLPGLPG---TPGLEGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKGDAGLPG-- 886
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
+PG +P PG P +PG LPG L G A PG S AP LP
Sbjct: 887 ----VPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGA---PGQSGAPGLP 939
Query: 247 GPSSAPDLPGPSSAPDLPG 265
G P + G + P +PG
Sbjct: 940 GAPGYPGMKGNAGIPGVPG 958
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 101/295 (34%), Gaps = 22/295 (7%)
Query: 26 EPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PG P +PG + AP PG P PG PG P G P
Sbjct: 1072 QPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPG 1131
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDL-- 137
G PG S AP L G P + G P +PG PG
Sbjct: 1132 QKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDKGQGGLPGIPGDRGMDGYPGQKGENGYPG 1191
Query: 138 ----------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
G + P PG +P PG P +PG PG LPG S
Sbjct: 1192 QPGLPGLGGEKGFAGTPGFPGLKGSPGYPGQDGLPGIPGLKGDSGFPGQPGQEGLPGLSG 1251
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
+ G P PG S GP AP L G P LPG L G AP L G
Sbjct: 1252 EKGMGGLPGMPGQPG-QSIAGPVGPPGAPGLQGKDGFPGLPGQKGESGLSGLPGAPGLKG 1310
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL 302
S P PG DL G + P G P +PG P +PG V G+ L
Sbjct: 1311 ESGMPGFPGAKG--DL-GANGIPGKRGEDGLPGVPGRDGQPGIPGLKGEVGGAGL 1362
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 99/301 (32%), Gaps = 38/301 (12%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPG-PSSAPDL-----PGP 77
P G AP PG P PG PG P LPG P DL PG
Sbjct: 1085 PGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPGQKGDLGQSGQPGL 1144
Query: 78 SSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDL------------PGP 122
S AP L G P + G P +PG PG G
Sbjct: 1145 SGAPGLDGQPGVPGIRGDKGQGGLPGIPGDRGMDGYPGQKGENGYPGQPGLPGLGGEKGF 1204
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
+ P PG +P PG P +PG PG LPG S + G P
Sbjct: 1205 AGTPGFPGLKGSPGYPGQDGLPGIPGLKGDSGFPGQPGQEGLPGLSGEKGMGGLPGMPGQ 1264
Query: 183 PGPS--------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--- 231
PG S AP L G P LPG L G AP L G S P PG
Sbjct: 1265 PGQSIAGPVGPPGAPGLQGKDGFPGLPGQKGESGLSGLPGAPGLKGESGMPGFPGAKGDL 1324
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
A +PG LPG P G P L G LPG P +PG LP
Sbjct: 1325 GANGIPGKRGEDGLPG---VPGRDGQPGIPGLKGEVGGAGLPGQPGFPGIPGLKGEGGLP 1381
Query: 292 G 292
G
Sbjct: 1382 G 1382
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 74/214 (34%), Gaps = 23/214 (10%)
Query: 69 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 128
+ P PG +P PG P +PG PG LPG S + G P
Sbjct: 1205 AGTPGFPGLKGSPGYPGQDGLPGIPGLKGDSGFPGQPGQEGLPGLSGEKGMGGLPGMPGQ 1264
Query: 129 PGPS--------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
PG S AP L G P LPG L G AP L G S P PG
Sbjct: 1265 PGQSIAGPVGPPGAPGLQGKDGFPGLPGQKGESGLSGLPGAPGLKGESGMPGFPGAKG-- 1322
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
DL G + P G P +PG P +PG L G LPG P +PG
Sbjct: 1323 DL-GANGIPGKRGEDGLPGVPGRDGQPGIPG------LKGEVGGAGLPGQPGFPGIPG-- 1373
Query: 241 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
L G P PG PG P G
Sbjct: 1374 ----LKGEGGLPGFPGAKGEAGFPGTPGVPGYAG 1403
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 74/211 (35%), Gaps = 13/211 (6%)
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPS 141
GPS P +PG LPG P PG P +PG + AP PG P PG
Sbjct: 1051 GPSGLPGVPGFKGETGLPG-YGQPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMK 1109
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
PG P G P G PG S AP L G P + G LP
Sbjct: 1110 GESGYPGQDGLPGRDGLPGVPGQKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDKGQGGLP 1169
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
G P G P G + P PG G + P PG +P PG P
Sbjct: 1170 G---IPGDRGMDGYPGQKGENGYPGQPGLPGLGGEKGFAGTPGFPGLKGSPGYPGQDGLP 1226
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG L G S P PG P L G
Sbjct: 1227 GIPG------LKGDSGFPGQPGQEGLPGLSG 1251
>gi|355701099|gb|EHH29120.1| hypothetical protein EGK_09458 [Macaca mulatta]
Length = 1712
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 102/301 (33%), Gaps = 25/301 (8%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PGP +PG LPG P G P +PG P LPG S P L GP
Sbjct: 781 PGPRGDAGVPGQPGFKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGASGQPGLSGPPGQ 840
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
PG AP GP P +PG P G PGP + G L G
Sbjct: 841 HGFPG---APGQEGPLGLPGIPGLEGLPGDRGDPGDIGAPGPVGMKGVSGDRGDAGLAGE 897
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SA 206
P PG +PG P L G +P + G P L G P G +
Sbjct: 898 RGHPGSPGFKGIDGMPG---TPGLKGERGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGI 954
Query: 207 PDLPGPSSAPDLPGPSS--------------APDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
P L G + P G D+ G G G P
Sbjct: 955 PGLKGLAGEPGFKGSRGDPGPPGPPPIILPGMKDIKGEKGDEGPMGLKGYLGAKGIQGMP 1014
Query: 253 DLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSTVLGSYLGEAGHQKS 310
+PG S P LPG P + G AP +PG P + G P T ++G G + +
Sbjct: 1015 GIPGLSGIPGLPGRPGHIKGVKGDIGAPGIPGLPGFPGVAGPPGITGFPGFIGSRGDKGA 1074
Query: 311 P 311
P
Sbjct: 1075 P 1075
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 84/260 (32%), Gaps = 30/260 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-- 81
P +PG P LPG S P L PG P PG LPG LPG P
Sbjct: 814 PGMPGLKGQPGLPGASGQPGLSGPPGQHGFPGAPGQEGPLGLPGIPGLEGLPGDRGDPGD 873
Query: 82 -DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
PGP + G L G P PG +PG P L G +P + G
Sbjct: 874 IGAPGPVGMKGVSGDRGDAGLAGERGHPGSPGFKGIDGMPG---TPGLKGERGSPGMDGF 930
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS------------- 187
P L G P PG G P L G + P G
Sbjct: 931 QGMPGLKG---RPGFPGSKGEAGFFG---IPGLKGLAGEPGFKGSRGDPGPPGPPPIILP 984
Query: 188 -APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDL 245
D+ G G G P +PG S P LPG P + G AP +
Sbjct: 985 GMKDIKGEKGDEGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGHIKGVKGDIGAPGI 1044
Query: 246 PGPSSAPDLPGPSSAPDLPG 265
PG P + GP PG
Sbjct: 1045 PGLPGFPGVAGPPGITGFPG 1064
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 82/240 (34%), Gaps = 10/240 (4%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
PGP P GP + G PGP P GP LPG PG
Sbjct: 727 REGFPGP---PGFIGPRGSKGAVGLPGPDGPPGPIGLPGPDGPPGDRGLPGEVLGAQ-PG 782
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P +PG LPG P G P +PG P LPG S P L GP
Sbjct: 783 PRGDAGVPGQPGFKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGASGQPGLSGPPGQHG 842
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
PG AP GP P +PG P G PGP + G L G
Sbjct: 843 FPG---APGQEGPLGLPGIPGLEGLPGDRGDPGDIGAPGPVGMKGVSGDRGDAGLAGERG 899
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
P PG +PG P L G +P + G P L G P G + +PG
Sbjct: 900 HPGSPGFKGIDGMPG---TPGLKGERGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGIPG 956
>gi|139949174|ref|NP_001077296.1| collagen alpha-1(X) chain precursor [Danio rerio]
gi|61740433|gb|AAX54479.1| collagen type X alpha 1 [Danio rerio]
Length = 655
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 99/258 (38%), Gaps = 31/258 (12%)
Query: 33 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 92
+ AP L G + AP L GP +PGPS +P P SA PGP+ P GP
Sbjct: 108 TGAPGLKGDTGAPGLQGPRG---MPGPSGSPG-PAGISATGKPGPAGLPGAMGPRGEQGF 163
Query: 93 PGPSSAPDLPGPSS--APDLPGPSS--APDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLP 147
G P LPG + GP+ P P GPS P PG LPG AP
Sbjct: 164 KGHPGIPGLPGQKGEMGVGVQGPAGERGPTGPVGPSGKPGAPGVG----LPGKPGAPGEA 219
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
G S +P G S GP G + AP + P PG + AP +PGP+
Sbjct: 220 GKSGSPGRDGES------GPMGPQGQKGQTGAPGV----GIPGKPGENGAPGMPGPT--- 266
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
GP + G AP +PG L G P PG + PG PG
Sbjct: 267 ---GPKGPQGVSGAPGAPGVPGYGKPGENGLKGDRGVPGSPGTTGQKGEPGAKGHTGYPG 323
Query: 266 PSSAPDLPGPSSAPDLPG 283
A GP A PG
Sbjct: 324 SPGAVGPAGPQGAKGFPG 341
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 91/234 (38%), Gaps = 28/234 (11%)
Query: 69 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 128
+ AP L G + AP L GP +PGPS +P P SA PGP+ P GP
Sbjct: 108 TGAPGLKGDTGAPGLQGPRG---MPGPSGSPG-PAGISATGKPGPAGLPGAMGPRGEQGF 163
Query: 129 PGPSSAPDLPGPSS--APDLPGPSS--APDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLP 183
G P LPG + GP+ P P GPS P PG LPG AP
Sbjct: 164 KGHPGIPGLPGQKGEMGVGVQGPAGERGPTGPVGPSGKPGAPGVG----LPGKPGAPGEA 219
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
G S +P G S GP G + AP + P PG + AP +PGP+
Sbjct: 220 GKSGSPGRDGES------GPMGPQGQKGQTGAPGV----GIPGKPGENGAPGMPGPTGPK 269
Query: 244 DLPGPSSAPDLPG-PSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G S AP PG P L G P PG + PG PG
Sbjct: 270 GPQGVSGAPGAPGVPGYGKPGENGLKGDRGVPGSPGTTGQKGEPGAKGHTGYPG 323
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 81/249 (32%), Gaps = 37/249 (14%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
GPS P PG LPG AP G S +P G S GP G + AP
Sbjct: 197 GPSGKPGAPGVG----LPGKPGAPGEAGKSGSPGRDGES------GPMGPQGQKGQTGAP 246
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAP----DLPGPSSAPD 145
+ P PG + AP +PGP+ G S AP PG P L G P
Sbjct: 247 GV----GIPGKPGENGAPGMPGPTGPKGPQGVSGAPGAPGVPGYGKPGENGLKGDRGVPG 302
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD------------LPG 193
PG + PG PG A GP A PG L G
Sbjct: 303 SPGTTGQKGEPGAKGHTGYPGSPGAVGPAGPQGAKGFPGERGQAGDKGEPGPMGPPGLKG 362
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSS 250
G PG A PGP A PG G + AP P GP
Sbjct: 363 HKGEQGAQGIEGKQGYPG---ATGQPGPRGATGAPGAKGELGHTGATGAPGTPGSVGPKG 419
Query: 251 APDLPGPSS 259
P PG +
Sbjct: 420 HPGYPGATG 428
>gi|76160814|gb|ABA39881.1| alpha 1 type XXIV collagen [Mus musculus]
gi|187952151|gb|AAI39135.1| Collagen, type XXIV, alpha 1 [Mus musculus]
Length = 1733
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 100/300 (33%), Gaps = 35/300 (11%)
Query: 27 PDLPGPSSAPDLPGPSS----------APDLPGPSSAPDL--PGPSSAPDLPGPSSAPDL 74
P L G AP PGP A D G + + G P LPG + +P
Sbjct: 927 PGLVGARGAPGSPGPKGQRGPRGPDGLAGDQGGHGAKGEKGNQGKRGLPGLPGKAGSPGE 986
Query: 75 PGPSSAPDLPG-PSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
G P G P S+ D+ GP+ P LPG + P G P G S PG
Sbjct: 987 RGVQGKPGFQGLPGSSGDV-GPAGEPGPRGLPGIAGLPGEMGVEGPPGTEGDSGLQGEPG 1045
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
G + A PGP P PG L G PG S P G
Sbjct: 1046 AKGDGGPAGSAGATGEPGPRGEPGAPGEEG---LQGKDGLKGAPGGSGLPGEDGDKGEMG 1102
Query: 191 LPGPS------SAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPG 238
LPG + LPGP PG GP GP + G
Sbjct: 1103 LPGTAGPVGRPGQMGLPGPEGIVGTPGQRGRLGKKGDKGQVGPMGEAGSRGPPGSVGENG 1162
Query: 239 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVL 298
P A G L GP P +PG PGPS LPGP PG STVL
Sbjct: 1163 PKGARGTRGAVGPLGLMGPEGEPGIPGYRGHQGQPGPSG---LPGPKGEKGYPGEDSTVL 1219
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 78/256 (30%), Gaps = 31/256 (12%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA----------------- 71
L GP P +PG PGPS LPGP PG S
Sbjct: 1178 LMGPEGEPGIPGYRGHQGQPGPSG---LPGPKGEKGYPGEDSTVLGPPGPPGEPGPMGEQ 1234
Query: 72 --------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 123
G P L G + PG GP GP +PGPS
Sbjct: 1235 GETGEHGEEGYKGHMGVPGLRGATGQQGPPGEPGDQGGQGPKGERGSEGPQGKRGVPGPS 1294
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
P +PG P PGP PG PG P G P PG + P
Sbjct: 1295 GKPGIPG---VPGFPGPKGLQGYPGVDGMSGYPGKPGLPGKQGLLGVPGSPGRTGVAGSP 1351
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
GP GP +P PGP LPG P G P G AP L G
Sbjct: 1352 GPQGGKGASGPPGSPGAPGPKGEQGLPGQPGVPGQRGHRGTPGDQGLRGAPGLKGQPGEH 1411
Query: 244 DLPGPSSAPDLPGPSS 259
G + PGP
Sbjct: 1412 GDQGLAGFQGFPGPRG 1427
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 79/254 (31%), Gaps = 16/254 (6%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP + LPGP PG G GP GP + GP A
Sbjct: 1112 RPGQMGLPGPEGIVGTPGQRGRLGKKGDKGQV---GPMGEAGSRGPPGSVGENGPKGARG 1168
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-------P 135
G L GP P +PG PGPS LPGP PG S P
Sbjct: 1169 TRGAVGPLGLMGPEGEPGIPGYRGHQGQPGPSG---LPGPKGEKGYPGEDSTVLGPPGPP 1225
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
PGP G G P L G + PG GP GP
Sbjct: 1226 GEPGPMGEQGETGEHGEEGYKGHMGVPGLRGATGQQGPPGEPGDQGGQGPKGERGSEGPQ 1285
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
+PGPS P +PG P PGP PG PG P G P P
Sbjct: 1286 GKRGVPGPSGKPGIPG---VPGFPGPKGLQGYPGVDGMSGYPGKPGLPGKQGLLGVPGSP 1342
Query: 256 GPSSAPDLPGPSSA 269
G + PGP
Sbjct: 1343 GRTGVAGSPGPQGG 1356
>gi|426397028|ref|XP_004064730.1| PREDICTED: collagen alpha-6(IV) chain isoform 1 [Gorilla gorilla
gorilla]
Length = 1687
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 86/248 (34%), Gaps = 12/248 (4%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
+ V+ P P G P L G S PG G +P LPG S P L
Sbjct: 1005 IIKGVSGNPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLK 1064
Query: 76 GPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
G + PGP P G G PG G S LPG
Sbjct: 1065 GDNGQTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGA 1124
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1125 PGFPGVAGMKGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGT 1184
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
PGPS +PGP+ LPGP PG AP PG G P L GP+
Sbjct: 1185 PGPSIT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAG 1237
Query: 251 APDLPGPS 258
P PG S
Sbjct: 1238 LPGAPGIS 1245
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 106/296 (35%), Gaps = 35/296 (11%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 72
Y PS P P PGP + LPG P PG S PG LP P
Sbjct: 657 GSYGPSGF---PGTPGFPGPKGSRGLPG---IPGQPGSSGTKGEPGSRGLVHLP---ELP 707
Query: 73 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PD 127
PGP LPG P LPG LPG +P LPG A D+ G +
Sbjct: 708 GFPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQG 761
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPG 184
L G + G S P L G P L GP +P PG P PG S + G
Sbjct: 762 LQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKG 821
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSS 241
S P AP PG S P G PG LPG P L G
Sbjct: 822 KSGLP------GAPGFPGTSGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGLVGLKG 875
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+P PG + P L GP G P +PG P +PG +PG + +
Sbjct: 876 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGKM 928
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 104/294 (35%), Gaps = 41/294 (13%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAP 81
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 627 GLPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPG---IP 683
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
PG S PG LP P PGP LPG P LPG LPG
Sbjct: 684 GQPGSSGTKGEPGSRGLVHLP---ELPGFPGPRGEKGLPG---FPGLPGKDG---LPGMI 734
Query: 142 SAPDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 195
+P LPG A D+ G + L G + G S P L G P L GP
Sbjct: 735 GSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKG 794
Query: 196 --SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDL---------PGPSS 241
+P PG P PG S + G S AP PG S P PG
Sbjct: 795 ERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGKKGPPGSIV 854
Query: 242 APDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P L G +P PG + P L GP G P +PG
Sbjct: 855 KKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG 908
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 59/177 (33%), Gaps = 4/177 (2%)
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----D 181
P G P L G S PG G +P LPG S P L G +
Sbjct: 1016 PGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLKGDNGQTVEISG 1075
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
PGP P G G PG G S LPG P + G
Sbjct: 1076 SPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFPGVAGMKG 1135
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVL 298
P LPG S GP +P L GP P PG LPG PGPS T +
Sbjct: 1136 EPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTPGPSITGV 1192
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 96/270 (35%), Gaps = 32/270 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----P 81
P PGP LPG P LPG LPG +P LPG A D+ G +
Sbjct: 707 PGFPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQ 760
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLP 138
L G + G S P L G P L GP +P PG P PG S +
Sbjct: 761 GLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIK 820
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G S P AP PG S P G PG LPG P PG
Sbjct: 821 GKSGLP------GAPGFPGTSGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPG----- 869
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
L G +P PG + P L GP G P +PG P +PG +PG +
Sbjct: 870 -LVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGST 925
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
GPS PG PGP P
Sbjct: 926 GK---MGPSGRAGTPGEKGDRGNPGPVGIP 952
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 58/164 (35%), Gaps = 11/164 (6%)
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
G + PGP P + GP P L G P LPGP G P G
Sbjct: 255 GKKGSKGEPGPKGFPGISGPPGFPGLGTTGEKGEKGIPGLPGPRGPMGSEGVQGPPGQQG 314
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSA 260
PG + + G LPGP D+ G S P PG P L G
Sbjct: 315 KKGTLGFPGLNGFQGIEGQKGDIGLPGPDVFIDIDGAVISGNPGDPGVPGLPGLKGDEGI 374
Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG----PSSTVLGS 300
+ GPS P LP S P GP P L G P T +G+
Sbjct: 375 QGVRGPSGVPGLPALSGVPGALGPQGFPGLKGDQGNPGRTTIGA 418
>gi|355754806|gb|EHH58707.1| hypothetical protein EGM_08620 [Macaca fascicularis]
Length = 1712
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 102/301 (33%), Gaps = 25/301 (8%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PGP +PG LPG P G P +PG P LPG S P L GP
Sbjct: 781 PGPRGDAGVPGQPGFKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGASGQPGLSGPPGQ 840
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
PG AP GP P +PG P G PGP + G L G
Sbjct: 841 HGFPG---APGQEGPLGLPGIPGLEGLPGDRGDPGDIGAPGPVGMKGVSGDRGDAGLAGE 897
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SA 206
P PG +PG P L G +P + G P L G P G +
Sbjct: 898 RGHPGSPGFKGIDGMPG---TPGLKGERGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGI 954
Query: 207 PDLPGPSSAPDLPGPSS--------------APDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
P L G + P G D+ G G G P
Sbjct: 955 PGLKGLAGEPGFKGSRGDPGPPGPPPIILPGMKDIKGEKGDEGPMGLKGYLGAKGIQGMP 1014
Query: 253 DLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSTVLGSYLGEAGHQKS 310
+PG S P LPG P + G AP +PG P + G P T ++G G + +
Sbjct: 1015 GIPGLSGIPGLPGRPGHIKGVKGDIGAPGIPGLPGFPGVAGPPGITGFPGFIGSRGDKGA 1074
Query: 311 P 311
P
Sbjct: 1075 P 1075
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 84/260 (32%), Gaps = 30/260 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-- 81
P +PG P LPG S P L PG P PG LPG LPG P
Sbjct: 814 PGMPGLKGQPGLPGASGQPGLSGPPGQHGFPGAPGQEGPLGLPGIPGLEGLPGDRGDPGD 873
Query: 82 -DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
PGP + G L G P PG +PG P L G +P + G
Sbjct: 874 IGAPGPVGMKGVSGDRGDAGLAGERGHPGSPGFKGIDGMPG---TPGLKGERGSPGMDGF 930
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS------------- 187
P L G P PG G P L G + P G
Sbjct: 931 QGMPGLKG---RPGFPGSKGEAGFFG---IPGLKGLAGEPGFKGSRGDPGPPGPPPIILP 984
Query: 188 -APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDL 245
D+ G G G P +PG S P LPG P + G AP +
Sbjct: 985 GMKDIKGEKGDEGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGHIKGVKGDIGAPGI 1044
Query: 246 PGPSSAPDLPGPSSAPDLPG 265
PG P + GP PG
Sbjct: 1045 PGLPGFPGVAGPPGITGFPG 1064
>gi|338729454|ref|XP_001492520.3| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-6(IV) chain-like
[Equus caballus]
Length = 1694
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 110/325 (33%), Gaps = 69/325 (21%)
Query: 18 STVTERPLEPDLPGPSSAPDLPGPSSAP--------------------DLPGPSSAPDLP 57
ST P + PGP PG + AP PG P LP
Sbjct: 554 STGLGMPGDQGDPGPQGL---PGETGAPGKDGIPGLPGLPGLLGDDGQGFPGEKGLPGLP 610
Query: 58 GPSS--------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 109
G LPG LPG LPG P LPG + +PGP
Sbjct: 611 GDKGHSGPTGPPGIGLPGSPGPRGLPGDQGLDGLPGQQGLPGLPGITLPCIIPGPYGPSG 670
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
PG P PGP A LPG P L G P PG P+LPG PGP
Sbjct: 671 FPG---TPGFPGPKGARGLPGTPGQPGLHGNKGEPGSPGLVHLPELPG------FPGPRG 721
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--------DLPGPSSAPDLPGP 221
LPG P LPG LPG +P LPG AP PG LPG
Sbjct: 722 EKGLPG---FPGLPGKDG---LPGKVGSPGLPGSKGAPGDIFGAEDGAPGEQGLQGLPGD 775
Query: 222 SSAP---DLPGPSSAPDL------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
P PGP G P +PG P LPG A L G P L
Sbjct: 776 RGFPGDSGFPGPKGLLGKSGLLGPKGERGRPGIPGLMGQPGLPG---AGGLFGIKGKPGL 832
Query: 273 PGPSSAPDLPGPSSAPDLPGPSSTV 297
PG AP PG S P GP
Sbjct: 833 PG---APGFPGTSGHPGKKGPRGET 854
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 108/309 (34%), Gaps = 50/309 (16%)
Query: 15 YLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSA 71
Y PS P P PGP A LPG P L G P PG P+LPG P
Sbjct: 666 YGPSGF---PGTPGFPGPKGARGLPGTPGQPGLHGNKGEPGSPGLVHLPELPGFPGPRGE 722
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--------DLPGPSSAPDLPGPS 123
LPG P LPG LPG +P LPG AP PG LPG
Sbjct: 723 KGLPG---FPGLPGKDG---LPGKVGSPGLPGSKGAPGDIFGAEDGAPGEQGLQGLPGDR 776
Query: 124 SAP---DLPGPSSAPDL------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
P PGP G P +PG P LPG A L G P LP
Sbjct: 777 GFPGDSGFPGPKGLLGKSGLLGPKGERGRPGIPGLMGQPGLPG---AGGLFGIKGKPGLP 833
Query: 175 GPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
G AP PG S P GP P G P L G AP L G LPG +
Sbjct: 834 G---APGFPGTSGHPGKKGPRGETGPPASAGKRGLPGLKGFPGAPGLIGFLGNSGLPGVT 890
Query: 232 SAP------------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 279
P L G P LPG A L G +P GPS PG
Sbjct: 891 GLPGLPGLKGGKGSVGLIGFPGMPGLPGIPGASGLKGVPGSPGRVGPSGRTGSPGEKGDR 950
Query: 280 DLPGPSSAP 288
PGP P
Sbjct: 951 GDPGPVGLP 959
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 70/193 (36%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G P LPGP+ LPG +P + G P +PG S + L + AP LPG S
Sbjct: 1013 IKGLIGRPGLPGPTGLRGLPGLKGSPGITG---FPGIPGESGSQGL---NGAPGLPGASG 1066
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P G PGP P G G PG G S
Sbjct: 1067 LPGSKGDHGQTLGISGTPGPKGQPGETGFEGVKGKAGLVGDVGFPGNKGEDGKVGLSGDV 1126
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
LPG P + G P LPG P GP P L G P LPG LPG
Sbjct: 1127 GLPGSPGLPGIAGMRGNPGLPGTPGHPGATGPLGPPGLVGIKGFPGLPGLHGLNGLPGTK 1186
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1187 GTHGTPGPSITGV 1199
>gi|344286326|ref|XP_003414910.1| PREDICTED: collagen alpha-6(IV) chain [Loxodonta africana]
Length = 1740
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 106/303 (34%), Gaps = 56/303 (18%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
LP +T L GPS P AP +PGP PG P + G P
Sbjct: 704 LPCIIT------GLYGPSGLP------GAPGVPGPKGIRGYPGTPGQPGVRGAKGEPGSA 751
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G P+LPG PGP LPG P LPG LPG +P LPGP AP
Sbjct: 752 GLVRLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGNVGSPGLPGPKGAP 799
Query: 136 --------DLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
PG LPG P PGP L G S G +P PG
Sbjct: 800 GDIFGAENGAPGEQGLQGLPGDRGFPGDSGFPGPKG---LLGKSGMLGAKGERGSPGAPG 856
Query: 185 PS---------------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
+ P LPG P L G G + P G P L G
Sbjct: 857 HTGKPGPRGPGGLSGIKGKPGLPGTVGFPGLAGRPGKKGSRGEAGHPGSTGKRGLPGLKG 916
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
+ L G + LPG + P LPGP G P +PG P +PG S
Sbjct: 917 LPGSAGLIGFLGSSGLPGATGLPGLPGPKGEKGSVGLIGFPGIPG---LPGIPGASGLKG 973
Query: 290 LPG 292
+PG
Sbjct: 974 IPG 976
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 103/297 (34%), Gaps = 47/297 (15%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAP 81
LPG LPG P PG P L GPS AP +PGP PG P
Sbjct: 680 GLPGDKGIDGLPGQQGLPGPPGITLPCIITGLYGPSGLPGAPGVPGPKGIRGYPGTPGQP 739
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
+ G P G P+LPG PGP LPG P LPG LPG
Sbjct: 740 GVRGAKGEPGSAGLVRLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGNV 787
Query: 142 SAPDLPGPSSAP--------DLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPD 190
+P LPGP AP PG LPG P PGP L G S
Sbjct: 788 GSPGLPGPKGAPGDIFGAENGAPGEQGLQGLPGDRGFPGDSGFPGPKG---LLGKSGMLG 844
Query: 191 LPGPSSAPDLPGPS---------------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 235
G +P PG + P LPG P L G G + P
Sbjct: 845 AKGERGSPGAPGHTGKPGPRGPGGLSGIKGKPGLPGTVGFPGLAGRPGKKGSRGEAGHPG 904
Query: 236 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G P L G + L G + LPG + P LPGP G P +PG
Sbjct: 905 STGKRGLPGLKGLPGSAGLIGFLGSSGLPGATGLPGLPGPKGEKGSVGLIGFPGIPG 961
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 109/300 (36%), Gaps = 39/300 (13%)
Query: 15 YLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSA 71
Y PS + P P +PGP PG P + G P G P+LPG P
Sbjct: 712 YGPSGL---PGAPGVPGPKGIRGYPGTPGQPGVRGAKGEPGSAGLVRLPELPGFPGPRGE 768
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 130
LPG P LPG LPG +P LPGP AP D+ G + PG LPG
Sbjct: 769 KGLPG---FPGLPGKDG---LPGNVGSPGLPGPKGAPGDIFGAENG--APGEQGLQGLPG 820
Query: 131 PSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---------------SAPD 172
P PGP L G S G +P PG + P
Sbjct: 821 DRGFPGDSGFPGPKG---LLGKSGMLGAKGERGSPGAPGHTGKPGPRGPGGLSGIKGKPG 877
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
LPG P L G G + P G P L G + L G + LPG +
Sbjct: 878 LPGTVGFPGLAGRPGKKGSRGEAGHPGSTGKRGLPGLKGLPGSAGLIGFLGSSGLPGATG 937
Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P LPGP G P +PG P +PG S +PG GP+ +P G
Sbjct: 938 LPGLPGPKGEKGSVGLIGFPGIPG---LPGIPGASGLKGIPGSPGRIGTSGPAGSPGEKG 994
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 113/316 (35%), Gaps = 46/316 (14%)
Query: 28 DLPGPSSAPDLPGPSSAPD------LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
LPG + P LPGP PG P +PG S +PG GP+ +P
Sbjct: 931 GLPGATGLPGLPGPKGEKGSVGLIGFPGIPGLPGIPGASGLKGIPGSPGRIGTSGPAGSP 990
Query: 82 DLPGPSSAPD---LPGP------------------SSAPDLPGP---SSAPDLPGPSSAP 117
G P +PGP + + PGP PGP+ P
Sbjct: 991 GEKGDRGNPGPVGIPGPRLPMLNLWFKGDKGSRGSAGSDGFPGPRGDKGEAGRPGPTGLP 1050
Query: 118 DLPGPSSAPD----LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS------APDLPG- 166
+PG +S+ PGPS + L G PG + P +PG + AP LPG
Sbjct: 1051 GVPGLASSIKGLVGRPGPSGSLGLRGLPGLKGAPGITGFPGMPGETGIRGLNGAPGLPGV 1110
Query: 167 ---PSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 222
P S D PG S P PGP P G GP PG G
Sbjct: 1111 AGLPGSKGD-PGQSLEIPGTPGPKGQPGERGFKGIKGKDGPIGDVGFPGNKGEDGKDGVP 1169
Query: 223 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
LPG P + G P LPG + GP P L GP P L G LP
Sbjct: 1170 GDIGLPGSPGFPGIAGLRGDPGLPGSPGHAGVTGPLGHPGLVGPKGFPGLSGLHGLNGLP 1229
Query: 283 GPSSAPDLPGPSSTVL 298
G A PGPS T +
Sbjct: 1230 GTKGAHGTPGPSITGV 1245
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 110/327 (33%), Gaps = 60/327 (18%)
Query: 19 TVTERPLEPDLPGPSSAPDLPGPSSAPDLPG-----------PSSAPDLPGPSSAPDLPG 67
T + RP P G PG + P G + PG LPG
Sbjct: 598 TQSTRPGMPGEQGDDGPQGHPGETGVPGKDGVPGLPGLPGPLGDAGQGFPGEKGFAGLPG 657
Query: 68 PSSAPDLPG--PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGP 122
L G P PGP LPG LPG P PG P L GP
Sbjct: 658 RKGQHGLTGLPGIGLPGSPGPRG---LPGDKGIDGLPGQQGLPGPPGITLPCIITGLYGP 714
Query: 123 S---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
S AP +PGP PG P + G P G P+LPG PGP
Sbjct: 715 SGLPGAPGVPGPKGIRGYPGTPGQPGVRGAKGEPGSAGLVRLPELPG------FPGPRGE 768
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 238
LPG P LPG LPG +P LPGP AP D+ G + PG LPG
Sbjct: 769 KGLPG---FPGLPGKDG---LPGNVGSPGLPGPKGAPGDIFGAENG--APGEQGLQGLPG 820
Query: 239 PSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---------------SAPD 280
P PGP L G S G +P PG + P
Sbjct: 821 DRGFPGDSGFPGPKG---LLGKSGMLGAKGERGSPGAPGHTGKPGPRGPGGLSGIKGKPG 877
Query: 281 LPGPSSAPDLPGPSSTVLGSYLGEAGH 307
LPG P L G GEAGH
Sbjct: 878 LPGTVGFPGLAGRPGKK--GSRGEAGH 902
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 114/335 (34%), Gaps = 69/335 (20%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPD--------LPGPSSAPDLPGPSSAPD---------LP 66
P + LPG +P LPGP AP PG LPG P L
Sbjct: 778 PGKDGLPGNVGSPGLPGPKGAPGDIFGAENGAPGEQGLQGLPGDRGFPGDSGFPGPKGLL 837
Query: 67 GPSSAPDLPGPSSAPDLPGPS---------------SAPDLPGPSSAPDLPGPSSAPDLP 111
G S G +P PG + P LPG P L G
Sbjct: 838 GKSGMLGAKGERGSPGAPGHTGKPGPRGPGGLSGIKGKPGLPGTVGFPGLAGRPGKKGSR 897
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP------DLP 165
G + P G P L G + L G + LPG + P LPGP P
Sbjct: 898 GEAGHPGSTGKRGLPGLKGLPGSAGLIGFLGSSGLPGATGLPGLPGPKGEKGSVGLIGFP 957
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGP---------- 212
G P +PG S +PG GP+ +P G P +PGP
Sbjct: 958 GIPGLPGIPGASGLKGIPGSPGRIGTSGPAGSPGEKGDRGNPGPVGIPGPRLPMLNLWFK 1017
Query: 213 --------SSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPD----LPGPSSAPDLPGP 257
+ + PGP PGP+ P +PG +S+ PGPS + L G
Sbjct: 1018 GDKGSRGSAGSDGFPGPRGDKGEAGRPGPTGLPGVPGLASSIKGLVGRPGPSGSLGLRGL 1077
Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
PG + P +PG + L G AP LPG
Sbjct: 1078 PGLKGAPGITGFPGMPGETGIRGLNG---APGLPG 1109
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 106/293 (36%), Gaps = 35/293 (11%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P LPG P L G G + P G P L G + L G + LPG
Sbjct: 875 KPGLPGTVGFPGLAGRPGKKGSRGEAGHPGSTGKRGLPGLKGLPGSAGLIGFLGSSGLPG 934
Query: 86 PSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
+ P LPGP L G P LPG A L G +P G S PG
Sbjct: 935 ATGLPGLPGPKGEKGSVGLIGFPGIPGLPGIPGASGLKGIPGSPGRIGTSGPAGSPGEKG 994
Query: 143 APDLPGPSS--APDLP-------------GPSSAPDLPGP---SSAPDLPGPSSAPDLPG 184
PGP P LP G + + PGP PGP+ P +PG
Sbjct: 995 DRGNPGPVGIPGPRLPMLNLWFKGDKGSRGSAGSDGFPGPRGDKGEAGRPGPTGLPGVPG 1054
Query: 185 PSSAPD----LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
+S+ PGPS + L G PG + P +PG + L G AP LPG +
Sbjct: 1055 LASSIKGLVGRPGPSGSLGLRGLPGLKGAPGITGFPGMPGETGIRGLNG---APGLPGVA 1111
Query: 241 SAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P G P + ++PG PGP P G GP PG
Sbjct: 1112 GLPGSKGDPGQSLEIPG------TPGPKGQPGERGFKGIKGKDGPIGDVGFPG 1158
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 64/179 (35%), Gaps = 8/179 (4%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P PGP P G GP PG G LPG P + G
Sbjct: 1127 PGTPGPKGQPGERGFKGIKGKDGPIGDVGFPGNKGEDGKDGVPGDIGLPGSPGFPGIAGL 1186
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
P LPG + GP P L GP P L G LPG A PGPS +
Sbjct: 1187 RGDPGLPGSPGHAGVTGPLGHPGLVGPKGFPGLSGLHGLNGLPGTKGAHGTPGPSIT-GV 1245
Query: 147 PGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
PGP+ LPGP PG AP PG G P + GP+ P PG S
Sbjct: 1246 PGPAG---LPGPKGEKGSPGIGIGAPGKPGVRGQ---KGGRGFPGVQGPAGLPGAPGIS 1298
>gi|426397030|ref|XP_004064731.1| PREDICTED: collagen alpha-6(IV) chain isoform 2 [Gorilla gorilla
gorilla]
Length = 1688
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 86/248 (34%), Gaps = 12/248 (4%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
+ V+ P P G P L G S PG G +P LPG S P L
Sbjct: 1006 IIKGVSGNPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLK 1065
Query: 76 GPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
G + PGP P G G PG G S LPG
Sbjct: 1066 GDNGQTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGA 1125
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1126 PGFPGVAGMKGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGT 1185
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
PGPS +PGP+ LPGP PG AP PG G P L GP+
Sbjct: 1186 PGPSIT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAG 1238
Query: 251 APDLPGPS 258
P PG S
Sbjct: 1239 LPGAPGIS 1246
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 106/296 (35%), Gaps = 35/296 (11%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 72
Y PS P P PGP + LPG P PG S PG LP P
Sbjct: 658 GSYGPSGF---PGTPGFPGPKGSRGLPG---IPGQPGSSGTKGEPGSRGLVHLP---ELP 708
Query: 73 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PD 127
PGP LPG P LPG LPG +P LPG A D+ G +
Sbjct: 709 GFPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQG 762
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPG 184
L G + G S P L G P L GP +P PG P PG S + G
Sbjct: 763 LQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKG 822
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSS 241
S P AP PG S P G PG LPG P L G
Sbjct: 823 KSGLP------GAPGFPGTSGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGLVGLKG 876
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+P PG + P L GP G P +PG P +PG +PG + +
Sbjct: 877 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGKM 929
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 104/293 (35%), Gaps = 41/293 (13%)
Query: 29 LPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPD 82
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 629 LPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPG---IPG 685
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
PG S PG LP P PGP LPG P LPG LPG
Sbjct: 686 QPGSSGTKGEPGSRGLVHLP---ELPGFPGPRGEKGLPG---FPGLPGKDG---LPGMIG 736
Query: 143 APDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-- 195
+P LPG A D+ G + L G + G S P L G P L GP
Sbjct: 737 SPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGE 796
Query: 196 -SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDL---------PGPSSA 242
+P PG P PG S + G S AP PG S P PG
Sbjct: 797 RGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGKKGPPGSIVK 856
Query: 243 PDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P L G +P PG + P L GP G P +PG
Sbjct: 857 KGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG 909
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 59/177 (33%), Gaps = 4/177 (2%)
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----D 181
P G P L G S PG G +P LPG S P L G +
Sbjct: 1017 PGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLKGDNGQTVEISG 1076
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
PGP P G G PG G S LPG P + G
Sbjct: 1077 SPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFPGVAGMKG 1136
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVL 298
P LPG S GP +P L GP P PG LPG PGPS T +
Sbjct: 1137 EPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTPGPSITGV 1193
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 96/270 (35%), Gaps = 32/270 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----P 81
P PGP LPG P LPG LPG +P LPG A D+ G +
Sbjct: 708 PGFPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQ 761
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLP 138
L G + G S P L G P L GP +P PG P PG S +
Sbjct: 762 GLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIK 821
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G S P AP PG S P G PG LPG P PG
Sbjct: 822 GKSGLP------GAPGFPGTSGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPG----- 870
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
L G +P PG + P L GP G P +PG P +PG +PG +
Sbjct: 871 -LVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGST 926
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
GPS PG PGP P
Sbjct: 927 GK---MGPSGRAGTPGEKGDRGNPGPVGIP 953
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 58/164 (35%), Gaps = 11/164 (6%)
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
G + PGP P + GP P L G P LPGP G P G
Sbjct: 256 GKKGSKGEPGPKGFPGISGPPGFPGLGTTGEKGEKGIPGLPGPRGPMGSEGVQGPPGQQG 315
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSA 260
PG + + G LPGP D+ G S P PG P L G
Sbjct: 316 KKGTLGFPGLNGFQGIEGQKGDIGLPGPDVFIDIDGAVISGNPGDPGVPGLPGLKGDEGI 375
Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG----PSSTVLGS 300
+ GPS P LP S P GP P L G P T +G+
Sbjct: 376 QGVRGPSGVPGLPALSGVPGALGPQGFPGLKGDQGNPGRTTIGA 419
>gi|324500440|gb|ADY40208.1| Collagen alpha-1(IV) chain, partial [Ascaris suum]
Length = 1759
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 97/279 (34%), Gaps = 28/279 (10%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------PSSAPDLPG 76
RP P + G A LPG P L GP L G +PG + P LPG
Sbjct: 1126 RPGIPGIKGERGADGLPG---LPGLQGPPGFDGLQGQKGHRGIPGDAGFNGRAGLPGLPG 1182
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
G P PGP A G + AP L G P LPG P PG AP
Sbjct: 1183 IKGERGQDGQHGYPGEPGPVGAHGESGLTGAPGLQG---EPGLPGRMGLPGQPGELGAPG 1239
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
PG AP L G G P LPG P + GP PG LPG
Sbjct: 1240 FPG---APGLEGIPGIRGERGDDGLPGLPGIDGIP-IQGPEGDAGYPGRDGNDGLPG--- 1292
Query: 197 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPD 253
LPG LPG G P PG + GP A LPGP P
Sbjct: 1293 ---LPGQRGDDGLPGLPGLIGERGDDGLPGYPGERGLRGIDGKRGPDGARGLPGP---PG 1346
Query: 254 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
L G AP G P PG P PG LPG
Sbjct: 1347 LDGYPGAPGERGMDGLPGFPGKDGIPGYPGERGEVGLPG 1385
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 90/266 (33%), Gaps = 22/266 (8%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P L G GP PG +PGP G + G P + G
Sbjct: 1076 PGLKGEPGDKGFDGPDGIDGYPGLPGMIGIPGPKGQTGDAGRNGERGFDGRPGIPGIKGE 1135
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
A LPG P L GP L G +PG + G + P LPG
Sbjct: 1136 RGADGLPG---LPGLQGPPGFDGLQGQKGHRGIPGDAG---FNGRAGLPGLPGIKGERGQ 1189
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
G P PGP A G + AP L G P LPG P PG AP PG A
Sbjct: 1190 DGQHGYPGEPGPVGAHGESGLTGAPGLQG---EPGLPGRMGLPGQPGELGAPGFPG---A 1243
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
P L G G P LPG P + GP PG LPG LPG
Sbjct: 1244 PGLEGIPGIRGERGDDGLPGLPGIDGIP-IQGPEGDAGYPGRDGNDGLPG------LPGQ 1296
Query: 267 SSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P L G LPG
Sbjct: 1297 RGDDGLPG---LPGLIGERGDDGLPG 1319
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 73/204 (35%), Gaps = 22/204 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EP LPG P PG AP PG AP L G G P LPG P + G
Sbjct: 1219 EPGLPGRMGLPGQPGELGAPGFPG---APGLEGIPGIRGERGDDGLPGLPGIDGIP-IQG 1274
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P PG LPG LPG LPG P L G LPG
Sbjct: 1275 PEGDAGYPGRDGNDGLPG------LPGQRGDDGLPG---LPGLIGERGDDGLPGYPGERG 1325
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
L G GP A LPGP P L G AP G P PG P PG
Sbjct: 1326 LRGIDGK---RGPDGARGLPGP---PGLDGYPGAPGERGMDGLPGFPGKDGIPGYPGERG 1379
Query: 206 APDLPGPSSAPDLPGPSSAPDLPG 229
LPG P + G P LPG
Sbjct: 1380 EVGLPG---LPGMRGEDGLPGLPG 1400
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 99/313 (31%), Gaps = 50/313 (15%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPD 73
+ E P PG P L G P LPG +PG P PG AP
Sbjct: 723 IKEIPGPDGFPGAPGLPGLRGDDGLPGLPGAPGIEGIPGQKGEDGSDGLPGAPGLDGAPG 782
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAP--------------DLPGPSSAPDLPGPSSAPDL 119
LPG LPG PG + P +PG + P G P L
Sbjct: 783 LPGMPGDDGLPGADGLRGQPGDAGLPGLPGLPGLPGEPGIGMPGQAGFPGPQGEDGLPGL 842
Query: 120 PGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
G P GP AP + PG S P LPG P L G + G G
Sbjct: 843 AGAEGFPGRQGPRGAPGVKGQPGESGYPGLPG---LPGLKGEKGLLGIDGKDGRVGKKGE 899
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-------------------- 216
LPG +PGP P G + PG P
Sbjct: 900 PGYAGLPGQKGEAGVPGPDGLPGPKGETGKQGFPGLEGPPGLPGIPGLRGEDGTIGFPGL 959
Query: 217 -DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 275
+PG P + G + PG P PG P LPG LPG P +PG
Sbjct: 960 RGMPGDDGVPGIDGYPGSRGEPGLDGLPGEPGRQGEPGLPGKMGLAGLPG---LPGMPGD 1016
Query: 276 SSAPDLPGPSSAP 288
S AP G P
Sbjct: 1017 SGAPGSKGLRGEP 1029
>gi|27807139|ref|NP_777059.1| collagen alpha-1(X) chain precursor [Bos taurus]
gi|115325|sp|P23206.1|COAA1_BOVIN RecName: Full=Collagen alpha-1(X) chain; Flags: Precursor
gi|264|emb|CAA37624.1| type X collagen [Bos taurus]
gi|227501|prf||1705182A collagen alpha1(X)
Length = 674
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 88/221 (39%), Gaps = 34/221 (15%)
Query: 60 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 119
P+ G AP +PG P +PG P PG + P PG P LPG L
Sbjct: 257 EQGPEGIGKPGAPGIPG---QPGIPGMKGQPGAPGTAGLPGAPG-FGKPGLPG------L 306
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
G LPG A GP+ P LPGPS GP P PG LPGP
Sbjct: 307 KGQRGPVGLPGSPGAKGEQGPAGHPGEAGLPGPSGNMGPQGPKGIPGNPG------LPGP 360
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 233
GP+ P G + L PG P L GP P LPGP P + G +
Sbjct: 361 KGEMGPVGPAGNPGAKGERGSSGLDGKPGYPGEPGLNGPKGNPGLPGPKGDPGIAG---S 417
Query: 234 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
P LPGP GP+ A +PG + GP P +PG
Sbjct: 418 PGLPGPV------GPAGAKGVPGHNGE---AGPRGVPGIPG 449
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 84/210 (40%), Gaps = 31/210 (14%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P PG P +PG P PG + P PG P LPG L G LPG
Sbjct: 265 KPGAPGIPGQPGIPGMKGQPGAPGTAGLPGAPG-FGKPGLPG------LKGQRGPVGLPG 317
Query: 86 PSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
A GP+ P LPGPS GP P PG LPGP GP+
Sbjct: 318 SPGAKGEQGPAGHPGEAGLPGPSGNMGPQGPKGIPGNPG------LPGPKGEMGPVGPAG 371
Query: 143 APDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
P G + L PG P L GP P LPGP P + G +P LPGP
Sbjct: 372 NPGAKGERGSSGLDGKPGYPGEPGLNGPKGNPGLPGPKGDPGIAG---SPGLPGPV---- 424
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
GP+ A +PG + GP P +PG
Sbjct: 425 --GPAGAKGVPGHNGE---AGPRGVPGIPG 449
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 82/203 (40%), Gaps = 31/203 (15%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +P +PG P PG + P PG P LPG L G LPG A
Sbjct: 272 PGQPGIPGMKGQPGAPGTAGLPGAPG-FGKPGLPG------LKGQRGPVGLPGSPGAKGE 324
Query: 84 PGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
GP+ P LPGPS GP P PG LPGP GP+ P G
Sbjct: 325 QGPAGHPGEAGLPGPSGNMGPQGPKGIPGNPG------LPGPKGEMGPVGPAGNPGAKGE 378
Query: 141 SSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
+ L PG P L GP P LPGP P + G +P LPGP GP+ A
Sbjct: 379 RGSSGLDGKPGYPGEPGLNGPKGNPGLPGPKGDPGIAG---SPGLPGPV------GPAGA 429
Query: 198 PDLPGPSSAPDLPGPSSAPDLPG 220
+PG + GP P +PG
Sbjct: 430 KGVPGHNGE---AGPRGVPGIPG 449
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 105/303 (34%), Gaps = 50/303 (16%)
Query: 34 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-----APDLPGPSSAPDLP---- 84
S P PGP PGP P G S P L G P PG P
Sbjct: 153 SVPGKPGPQGPTGEPGPRGFPGEKGTSGVPGLNGQKGEMGHCTPCRPGERGLPGPQGPTG 212
Query: 85 ----------GPSSAPDLPGPSSAPDLPGPSSA--------------PDLPGPSSAPDLP 120
G + P PG +PG A P+ G AP +P
Sbjct: 213 PPGPPGVGKRGENGLPGQPGLKGDQGVPGERGAAGPSGPQGPPGEQGPEGIGKPGAPGIP 272
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--APDLPGPSSAPDLPGPSSAPDLPGPSS 178
G P +PG P PG + P PG P L G LPG A GP+
Sbjct: 273 G---QPGIPGMKGQPGAPGTAGLPGAPGFGKPGLPGLKGQRGPVGLPGSPGAKGEQGPAG 329
Query: 179 AP---DLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PG 229
P LPGPS GP P LPGP GP+ P G + L PG
Sbjct: 330 HPGEAGLPGPSGNMGPQGPKGIPGNPGLPGPKGEMGPVGPAGNPGAKGERGSSGLDGKPG 389
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
P L GP P LPGP P + G P GP+ A +PG + GP P
Sbjct: 390 YPGEPGLNGPKGNPGLPGPKGDPGIAGSPGLPGPVGPAGAKGVPGHNGE---AGPRGVPG 446
Query: 290 LPG 292
+PG
Sbjct: 447 IPG 449
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 68/168 (40%), Gaps = 24/168 (14%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSS 79
+P P L G LPG A GP+ P LPGPS GP P PG
Sbjct: 300 KPGLPGLKGQRGPVGLPGSPGAKGEQGPAGHPGEAGLPGPSGNMGPQGPKGIPGNPG--- 356
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPD 136
LPGP GP+ P G + L PG P L GP P LPGP P
Sbjct: 357 ---LPGPKGEMGPVGPAGNPGAKGERGSSGLDGKPGYPGEPGLNGPKGNPGLPGPKGDPG 413
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
+ G +P LPGP GP+ A +PG + GP P +PG
Sbjct: 414 IAG---SPGLPGPV------GPAGAKGVPGHNGE---AGPRGVPGIPG 449
>gi|384939862|gb|AFI33536.1| collagen alpha-2(IV) chain preproprotein [Macaca mulatta]
Length = 1712
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 102/301 (33%), Gaps = 25/301 (8%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PGP +PG LPG P G P +PG P LPG S P L GP
Sbjct: 781 PGPRGDAGVPGQPGFKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGASGQPGLSGPPGQ 840
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
PG AP GP P +PG P G PGP + G L G
Sbjct: 841 HGFPG---APGQEGPLGLPGIPGLEGLPGDRGDPGDIGAPGPVGMKGVSGDRGDAGLAGE 897
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SA 206
P PG +PG P L G +P + G P L G P G +
Sbjct: 898 RGHPGSPGFKGIDGMPG---TPGLKGERGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGI 954
Query: 207 PDLPGPSSAPDLPGPSS--------------APDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
P L G + P G D+ G G G P
Sbjct: 955 PGLKGLAGEPGFKGSRGDPGPPGPPPIILPGMKDIKGEKGDEGPMGLKGYLGAKGIQGMP 1014
Query: 253 DLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSTVLGSYLGEAGHQKS 310
+PG S P LPG P + G AP +PG P + G P T ++G G + +
Sbjct: 1015 GIPGLSGIPGLPGRPGHIKGVKGDIGAPGIPGLPGFPGVAGPPGITGFPGFIGSRGDKGA 1074
Query: 311 P 311
P
Sbjct: 1075 P 1075
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 84/260 (32%), Gaps = 30/260 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-- 81
P +PG P LPG S P L PG P PG LPG LPG P
Sbjct: 814 PGMPGLKGQPGLPGASGQPGLSGPPGQHGFPGAPGQEGPLGLPGIPGLEGLPGDRGDPGD 873
Query: 82 -DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
PGP + G L G P PG +PG P L G +P + G
Sbjct: 874 IGAPGPVGMKGVSGDRGDAGLAGERGHPGSPGFKGIDGMPG---TPGLKGERGSPGMDGF 930
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS------------- 187
P L G P PG G P L G + P G
Sbjct: 931 QGMPGLKG---RPGFPGSKGEAGFFG---IPGLKGLAGEPGFKGSRGDPGPPGPPPIILP 984
Query: 188 -APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDL 245
D+ G G G P +PG S P LPG P + G AP +
Sbjct: 985 GMKDIKGEKGDEGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGHIKGVKGDIGAPGI 1044
Query: 246 PGPSSAPDLPGPSSAPDLPG 265
PG P + GP PG
Sbjct: 1045 PGLPGFPGVAGPPGITGFPG 1064
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 81/231 (35%), Gaps = 32/231 (13%)
Query: 16 LPSTVTERPLEPDL--PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 73
L E+ E D+ PG + + GP P L G + P L GP + PG P
Sbjct: 1117 LKGFFGEKGTEGDIGFPGITGVTGVQGP---PGLKGQTGFPGLTGPPGSQGEPGRIGLPG 1173
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------------------PSS 115
G P +PG P L G LPG P PG P
Sbjct: 1174 GKGDDGWPGIPGLPGFPGLRGIRGLHGLPGTKGFPGSPGADIHGDPGFPGPPGDRGDPGD 1233
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSS 169
A LPGP P G AP GP +P L G PS+ PG AP + G
Sbjct: 1234 ANTLPGPVGVPGQKGEQGAPGERGPPGSPGLQGFPGITPPSNISGAPGDKGAPGIFGLKG 1293
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
PGP + LPG PG AP PG GP P + G
Sbjct: 1294 YRGPPGPPGSAALPGSKGDAGNPG---APGTPGTKGWAGDSGPQGRPGVFG 1341
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 77/218 (35%), Gaps = 15/218 (6%)
Query: 76 GPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
G P +PG S P LPG P + G AP +PG P + GP PG +
Sbjct: 1009 GIQGMPGIPGLSGIPGLPGRPGHIKGVKGDIGAPGIPGLPGFPGVAGP------PGITGF 1062
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
P G PG + GP+ D +LPG P L G +PG
Sbjct: 1063 PGFIGSRGDKGAPGRAGLYGEIGPTG--DFGDIGDTINLPG---RPGLKGEQGTAGIPGL 1117
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
G PG + + GP P L G + P L GP + PG P
Sbjct: 1118 KGFFGEKGTEGDIGFPGITGVTGVQGP---PGLKGQTGFPGLTGPPGSQGEPGRIGLPGG 1174
Query: 255 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G P +PG P L G LPG P PG
Sbjct: 1175 KGDDGWPGIPGLPGFPGLRGIRGLHGLPGTKGFPGSPG 1212
>gi|293345032|ref|XP_002725921.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(X) chain [Rattus
norvegicus]
Length = 679
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 77/200 (38%), Gaps = 19/200 (9%)
Query: 21 TERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
T P P +PG P AP + GP AP G P L G LPG A
Sbjct: 266 TGSPGRPGIPGEKGHP------GAPGIAGPPGAPGF-GKQGLPGLRGQRGPAGLPGAPGA 318
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
GP+ P PG + +P GP +PG +PG L GP+ P G
Sbjct: 319 KGEQGPAGHPGEPGLTGSPGNMGPQGPKGIPGNHG---IPGTKGETGLVGPAGPPGARGA 375
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
P L G + P PG L GP P LPGP P + G L GP+ +
Sbjct: 376 RGPPGLDGKTGYPGDPG------LNGPKGNPGLPGPKGDPGVGGAPGLRGLVGPTGPKGV 429
Query: 201 PGPSSAPDLPGPSSAPDLPG 220
PG + GP P +PG
Sbjct: 430 PGHNGE---AGPRGEPGIPG 446
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 79/200 (39%), Gaps = 16/200 (8%)
Query: 48 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 107
PG + +P PG P G AP + GP AP G P L G LPG A
Sbjct: 263 PGATGSPGRPG---IPGEKGHPGAPGIAGPPGAPGF-GKQGLPGLRGQRGPAGLPGAPGA 318
Query: 108 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 167
GP+ P PG + +P GP +PG +PG L GP+ P G
Sbjct: 319 KGEQGPAGHPGEPGLTGSPGNMGPQGPKGIPGNHG---IPGTKGETGLVGPAGPPGARGA 375
Query: 168 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 227
P L G + P PG L GP P LPGP P + G L GP+ +
Sbjct: 376 RGPPGLDGKTGYPGDPG------LNGPKGNPGLPGPKGDPGVGGAPGLRGLVGPTGPKGV 429
Query: 228 PGPSSAPDLPGPSSAPDLPG 247
PG + GP P +PG
Sbjct: 430 PGHNGE---AGPRGEPGIPG 446
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 90/230 (39%), Gaps = 17/230 (7%)
Query: 39 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 98
PG + +P PG P G AP + GP AP G P L G LPG A
Sbjct: 263 PGATGSPGRPG---IPGEKGHPGAPGIAGPPGAPGF-GKQGLPGLRGQRGPAGLPGAPGA 318
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 158
GP+ P PG + +P GP +PG +PG L GP+ P G
Sbjct: 319 KGEQGPAGHPGEPGLTGSPGNMGPQGPKGIPGNHG---IPGTKGETGLVGPAGPPGARGA 375
Query: 159 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
P L G + P PG L GP P LPGP P + G L GP+ +
Sbjct: 376 RGPPGLDGKTGYPGDPG------LNGPKGNPGLPGPKGDPGVGGAPGLRGLVGPTGPKGV 429
Query: 219 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
PG + GP P +PG + P P + P + P PGP+
Sbjct: 430 PGHNGEA---GPRGEPGIPG-TRGPIGPRWAWGPPXRHSLNKPGAPGPAG 475
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 78/200 (39%), Gaps = 25/200 (12%)
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
PG + +P PG P G AP + GP AP G P L G GP+
Sbjct: 263 PGATGSPGRPG---IPGEKGHPGAPGIAGPPGAPGF-GKQGLPGLRGQR------GPAGL 312
Query: 162 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 221
P PG A GP+ P PG + +P GP +PG +PG L GP
Sbjct: 313 PGAPG---AKGEQGPAGHPGEPGLTGSPGNMGPQGPKGIPGNHG---IPGTKGETGLVGP 366
Query: 222 SSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 278
+ P G P L G + P L GP P LPGP P + G L GP+
Sbjct: 367 AGPPGARGARGPPGLDGKTGYPGDPGLNGPKGNPGLPGPKGDPGVGGAPGLRGLVGPTGP 426
Query: 279 PDLP------GPSSAPDLPG 292
+P GP P +PG
Sbjct: 427 KGVPGHNGEAGPRGEPGIPG 446
>gi|121705308|ref|XP_001270917.1| cell surface protein, putative [Aspergillus clavatus NRRL 1]
gi|119399063|gb|EAW09491.1| cell surface protein, putative [Aspergillus clavatus NRRL 1]
Length = 527
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 82/212 (38%), Gaps = 12/212 (5%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P +PG P +PG S P P P LPG P+ P P +PG S P P
Sbjct: 288 QPSVPG---QPSIPGQPSTPGQPSTPGQPSLPGQPGVPEQPSTPGQPSVPGQPSTPGQPS 344
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P PG S P P P PG S P P P PG SAP P P
Sbjct: 345 TPGQPSTPGQPSTPGQPSTPGQPSTPGQPSTPGQPSTPGQPSTPGQPSAPGQPSVPGQPS 404
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
PG P+ P P PG P PG S P PG P PG P+ P
Sbjct: 405 TPGQPGVPEQPSTPGQPSTPG---QPSTPGQPSVPGQPGVPEQPSTPGQPGVPEHPSTPG 461
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
P PG SS P P+ P PS++P P
Sbjct: 462 QPAAPGESSVPG------HPETPAPSASPAQP 487
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 81/211 (38%), Gaps = 12/211 (5%)
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
P +PG P +PG S P P P LPG P+ P P +PG S P P
Sbjct: 289 PSVPG---QPSIPGQPSTPGQPSTPGQPSLPGQPGVPEQPSTPGQPSVPGQPSTPGQPST 345
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
P PG S P P P PG S P P P PG SAP P P
Sbjct: 346 PGQPSTPGQPSTPGQPSTPGQPSTPGQPSTPGQPSTPGQPSTPGQPSAPGQPSVPGQPST 405
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
PG P+ P P PG P PG S P PG P PG P+ P
Sbjct: 406 PGQPGVPEQPSTPGQPSTPG---QPSTPGQPSVPGQPGVPEQPSTPGQPGVPEHPSTPGQ 462
Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
P PG SS P P+ P PS++P P
Sbjct: 463 PAAPGESSVPG------HPETPAPSASPAQP 487
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 80/211 (37%), Gaps = 12/211 (5%)
Query: 45 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 104
P +PG S P P P PG S P PG P PG S P P P PG
Sbjct: 289 PSVPGQPSIPGQPSTPGQPSTPGQPSLPGQPGVPEQPSTPGQPSVPGQPSTPGQPSTPGQ 348
Query: 105 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 164
S P P P PG S P P P PG S P P P +PG S P
Sbjct: 349 PSTPGQPSTPGQPSTPGQPSTPGQPSTPGQPSTPGQPSTPGQPSAPGQPSVPGQPSTPGQ 408
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PG P PG P PG P PG S P PG P PG P+ P
Sbjct: 409 PGVPEQPSTPG---QPSTPG---QPSTPGQPSVPGQPGVPEQPSTPGQPGVPEHPSTPGQ 462
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
P PG SS P P+ P PS++P P
Sbjct: 463 PAAPGESSVPG------HPETPAPSASPAQP 487
>gi|181331962|ref|NP_001116702.1| collagen alpha-5(IV) chain precursor [Danio rerio]
Length = 1659
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 63/155 (40%), Gaps = 15/155 (9%)
Query: 36 PDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 92
P PGP P PG PGP+ P PGP PGP P LPG AP
Sbjct: 1070 PGNPGPKGEPGTPG------FPGPAGLKGQPGFPGPQGLTGSPGPKGDPGLPGFQGAPGN 1123
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGP 149
PGP PGP+ PG P PG S P +PG + +PGP+ PG
Sbjct: 1124 PGPKGLDGAPGPAGLNGAPG---RPGDPGRSGLPGIPGDKGLAGRDGIPGPAGQKGEPGL 1180
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
P L G P PGP+ + PGP PG
Sbjct: 1181 PGQPGLKGAKGDPGFPGPAGSAGFPGPKGDAGFPG 1215
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 114/336 (33%), Gaps = 72/336 (21%)
Query: 26 EPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+ LPG P S ++ GP + PG AP PGP +PG S P PG
Sbjct: 880 QDGLPGLPGSKGEMGSMGPPGSKGNPGNPGAPGFPGPKGDDGVPGQSGNPGFPGLKGDKG 939
Query: 83 LPGPSSAPDL----------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---------- 122
G P + G S P GP + G S P LPG
Sbjct: 940 ETGIQGPPGITTSTSVLKGQKGESGVPGFSGPPGPKGITGISGDPGLPGQDGRPGLPGPP 999
Query: 123 -----SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---------------- 161
+ P +PG A L G LPG P + G S
Sbjct: 1000 GPKGDAGLPGIPGSPGATGLKGAMGEMGLPG---VPGVKGNSGQPGQPGQPGSPGGPGFP 1056
Query: 162 -------------PDLPGPS---SAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPG 202
P PGP P PGP+ P PGP PGP P LPG
Sbjct: 1057 GPKGEAGVPGYGLPGNPGPKGEPGTPGFPGPAGLKGQPGFPGPQGLTGSPGPKGDPGLPG 1116
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSS 259
AP PGP PGP+ PG P PG S P +PG + +PGP+
Sbjct: 1117 FQGAPGNPGPKGLDGAPGPAGLNGAPG---RPGDPGRSGLPGIPGDKGLAGRDGIPGPAG 1173
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
PG P L G P PGP+ + PGP
Sbjct: 1174 QKGEPGLPGQPGLKGAKGDPGFPGPAGSAGFPGPKG 1209
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 50/126 (39%), Gaps = 6/126 (4%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPD 82
+P PGP PGP P LPG AP PGP PGP + AP PG
Sbjct: 1093 QPGFPGPQGLTGSPGPKGDPGLPGFQGAPGNPGPKGLDGAPGPAGLNGAPGRPGDPGRSG 1152
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG L G P G P LPG P L G P PGP+ + PGP
Sbjct: 1153 LPGIPGDKGLAGRDGIPGPAGQKGEPGLPG---QPGLKGAKGDPGFPGPAGSAGFPGPKG 1209
Query: 143 APDLPG 148
PG
Sbjct: 1210 DAGFPG 1215
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 97/282 (34%), Gaps = 55/282 (19%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---------------SS 61
P T + G S P GP + G S P LPG +
Sbjct: 947 PGITTSTSVLKGQKGESGVPGFSGPPGPKGITGISGDPGLPGQDGRPGLPGPPGPKGDAG 1006
Query: 62 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---------------------D 100
P +PG A L G LPG P + G S P
Sbjct: 1007 LPGIPGSPGATGLKGAMGEMGLPG---VPGVKGNSGQPGQPGQPGSPGGPGFPGPKGEAG 1063
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPG 157
+PG P PGP P PG PGP+ P PGP PGP P LPG
Sbjct: 1064 VPG-YGLPGNPGPKGEPGTPG------FPGPAGLKGQPGFPGPQGLTGSPGPKGDPGLPG 1116
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSS 214
AP PGP PGP+ PG P PG S P +PG + +PGP+
Sbjct: 1117 FQGAPGNPGPKGLDGAPGPAGLNGAPG---RPGDPGRSGLPGIPGDKGLAGRDGIPGPAG 1173
Query: 215 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
PG P L G P PGP+ + PGP PG
Sbjct: 1174 QKGEPGLPGQPGLKGAKGDPGFPGPAGSAGFPGPKGDAGFPG 1215
>gi|1850097|dbj|BAA09791.1| a6(IV) collagen [Homo sapiens]
Length = 1600
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 86/244 (35%), Gaps = 12/244 (4%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
V+ +P P G P L G S PG G +P LPG S P L G +
Sbjct: 1008 VSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLKGDNG 1067
Query: 80 AP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
PGP P G G PG G S LPG P
Sbjct: 1068 QTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFP 1127
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
+ G P LPG S GP +P L GP P PG LPG PGPS
Sbjct: 1128 GVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTPGPS 1187
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
+PGP+ LPGP PG AP PG G P L GP+ P
Sbjct: 1188 IT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAGLPGA 1240
Query: 255 PGPS 258
PG S
Sbjct: 1241 PGIS 1244
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 97/307 (31%), Positives = 109/307 (35%), Gaps = 41/307 (13%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 656 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPR 712
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 713 GEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 766
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPS---S 178
G S P L G P L GP +P PG P PG S + G S
Sbjct: 767 HKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPG 826
Query: 179 APDLPGPSSAPDL---------PGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPD 226
AP PG S P PG LPG P L G +P PG + P
Sbjct: 827 APGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPA 886
Query: 227 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
L GP G P +PG LPG S L G + GPS PG
Sbjct: 887 LSGPKGEKGSVGFVGFPGIPG------LPGVSGTRGLKGIPGSTGKMGPSGRAGTPGEKG 940
Query: 287 APDLPGP 293
PGP
Sbjct: 941 DRGNPGP 947
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 103/285 (36%), Gaps = 35/285 (12%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAP 81
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 626 GLPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQP 685
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 686 GSSGSKGEPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMI 733
Query: 142 SAPDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 195
+P LPG A D+ G + L G + G S P L G P L GP
Sbjct: 734 GSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKG 793
Query: 196 --SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
+P PG P PG S + G S AP PG S P G PG
Sbjct: 794 ERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSIV 853
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
LPG P PG L G +P PG + P L GP
Sbjct: 854 KKGLPGLKGLPGNPG------LVGLKGSPGSPGVAGLPALSGPKG 892
Score = 44.7 bits (104), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 100/277 (36%), Gaps = 32/277 (11%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EP PG P+LPG PGP LPG P LPG LPG +P LPG
Sbjct: 693 EPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPG 740
Query: 86 PSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDL 137
A D+ G + L G + G S P L G P L GP +P
Sbjct: 741 SKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGT 800
Query: 138 PGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
PG P PG S + G S AP PG S P G PG LPG
Sbjct: 801 PGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGL 860
Query: 195 S---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
P L G +P PG + P L GP G P +PG LPG S
Sbjct: 861 KGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG------LPGVSGT 914
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
L G + GPS PG PGP P
Sbjct: 915 RGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIP 951
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 70/193 (36%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG LPG + + G P +PG S + + G +P LPG S
Sbjct: 1005 IKGVSGKPGPPGFMGIRGLPGLKGSSGITG---FPGMPGESGSQGIRG---SPGLPGASG 1058
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P L G + PGP P G G PG G S
Sbjct: 1059 LPGLKGDNGQTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDV 1118
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
LPG P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1119 GLPGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTK 1178
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1179 GTHGTPGPSITGV 1191
>gi|56565281|dbj|BAD77968.1| type 1 collagen alpha 1 [Paralichthys olivaceus]
Length = 1447
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 91/253 (35%), Gaps = 12/253 (4%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
G + A PG AP L GP + PG + LPG PG S PD G A
Sbjct: 484 GSAGAKGAPGERGAPGLLGPKGSTGEPGRTGEAGLPGAKGMTGSPG-SPGPD--GKMGAA 540
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 159
PG P PG A PG P G + PG GP AP G
Sbjct: 541 GAPGQDGRPGPPGSVGARGQPGVMGFPGPKGAAGEGGKPGERGVMGPTGPVGAPGKDGDV 600
Query: 160 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
A GPS G A PG LPGP A G LPG + A
Sbjct: 601 GAQGPSGPSGPAGERGEQGAAGGPGFQG---LPGPQGAVGETGKPGEQGLPGEAGATGPA 657
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 279
G PG AP + GP+ A PGPS G + AP PG P L G
Sbjct: 658 GARGDRGFPGERGAPGINGPAGARGSPGPSGNDGAKGDAGAPGAPGAQGPPGLQG----- 712
Query: 280 DLPGPSSAPDLPG 292
+PG + LPG
Sbjct: 713 -MPGERGSAGLPG 724
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 88/242 (36%), Gaps = 15/242 (6%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSS---APDLPGPSSAPDL 83
PG AP L GP + PG + LPG + +P PGP A PG P
Sbjct: 492 PGERGAPGLLGPKGSTGEPGRTGEAGLPGAKGMTGSPGSPGPDGKMGAAGAPGQDGRPGP 551
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
PG A PG P G + PG GP AP G A GPS
Sbjct: 552 PGSVGARGQPGVMGFPGPKGAAGEGGKPGERGVMGPTGPVGAPGKDGDVGAQGPSGPSGP 611
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
G A PG LPGP A G LPG + A G PG
Sbjct: 612 AGERGEQGAAGGPGFQG---LPGPQGAVGETGKPGEQGLPGEAGATGPAGARGDRGFPGE 668
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
AP + GP+ A PGPS G + AP PG P L G +PG + L
Sbjct: 669 RGAPGINGPAGARGSPGPSGNDGAKGDAGAPGAPGAQGPPGLQG------MPGERGSAGL 722
Query: 264 PG 265
PG
Sbjct: 723 PG 724
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 95/271 (35%), Gaps = 12/271 (4%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
EP G + P G + +P PGP A PG P PG A PG P
Sbjct: 509 EPGRTGEAGLPGAKGMTGSPGSPGPDGKMGAAGAPGQDGRPGPPGSVGARGQPGVMGFPG 568
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
G + PG GP AP G A GPS G A PG
Sbjct: 569 PKGAAGEGGKPGERGVMGPTGPVGAPGKDGDVGAQGPSGPSGPAGERGEQGAAGGPGFQG 628
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
LPGP A G LPG + A G PG AP + GP+ A PG
Sbjct: 629 ---LPGPQGAVGETGKPGEQGLPGEAGATGPAGARGDRGFPGERGAPGINGPAGARGSPG 685
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
PS G + AP PG P L G P G + P L G G AP
Sbjct: 686 PSGNDGAKGDAGAPGAPGAQGPPGLQG---MPGERGSAGLPGLRGDRGDQGAKGADGAPG 742
Query: 263 LPGP---SSAPDLPGPSSAPDLPGPSSAPDL 290
GP + A LPG + A G AP +
Sbjct: 743 KDGPRGMTGAIGLPGAAGATGDKGEPGAPGI 773
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 106/331 (32%), Gaps = 57/331 (17%)
Query: 21 TERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
T +P E LPG + A G PG AP + GP+ A PGPS G + A
Sbjct: 639 TGKPGEQGLPGEAGATGPAGARGDRGFPGERGAPGINGPAGARGSPGPSGNDGAKGDAGA 698
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDL 137
P PG P L G P G + P L G G AP GP + A L
Sbjct: 699 PGAPGAQGPPGLQG---MPGERGSAGLPGLRGDRGDQGAKGADGAPGKDGPRGMTGAIGL 755
Query: 138 PGPSSAPDLPGPSSAPDL------------------PGPSSAPDLPGPSSAPDLPGPSSA 179
PG + A G AP + PGP+ PG P G +
Sbjct: 756 PGAAGATGDKGEPGAPGIVGPAGARGGPGERGESGPPGPAGFAGPPGADGQPGAKGEAGD 815
Query: 180 PDLPG------------------------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 215
G P A GP A PG + PGPS
Sbjct: 816 NGAKGDAGPPGPSGPTGAAGPGGPVGNTGPKGARGPAGPPGATGFPGSAGRVGPPGPSGN 875
Query: 216 ------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGP 266
P G G + PG A LPGPS PG AP +PGP
Sbjct: 876 AGPAGPPGATGKEGQKGNRGETGPAGRPGEMGAAGLPGPSGEKGNPGAEGAPGSSGIPGP 935
Query: 267 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
G P G P LPGPS V
Sbjct: 936 QGINGGRGIVGLPGQRGERGFPGLPGPSGEV 966
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 75/212 (35%), Gaps = 6/212 (2%)
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
G + A PG AP L GP + PG + LPG PG S PD G A
Sbjct: 484 GSAGAKGAPGERGAPGLLGPKGSTGEPGRTGEAGLPGAKGMTGSPG-SPGPD--GKMGAA 540
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
PG P PG A PG P G + PG GP AP G
Sbjct: 541 GAPGQDGRPGPPGSVGARGQPGVMGFPGPKGAAGEGGKPGERGVMGPTGPVGAPGKDGDV 600
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
A GPS G A PG LPGP A G LPG + A
Sbjct: 601 GAQGPSGPSGPAGERGEQGAAGGPGFQG---LPGPQGAVGETGKPGEQGLPGEAGATGPA 657
Query: 265 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
G PG AP + GP+ A PGPS
Sbjct: 658 GARGDRGFPGERGAPGINGPAGARGSPGPSGN 689
>gi|426236903|ref|XP_004012404.1| PREDICTED: collagen alpha-1(IV) chain [Ovis aries]
Length = 1793
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 111/310 (35%), Gaps = 51/310 (16%)
Query: 28 DLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
D+PGP P L G S P LPG +P PG +PG S A + G P
Sbjct: 970 DMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGSPGQPG------IPGDSPAMGVMGTPGQP 1023
Query: 82 DLPGPSSAPDLPGPSSAPD-------------LPGPSSAPDLPGPSSAPDLPGPSSAPDL 128
PGP+ P LPG LPG + D S G
Sbjct: 1024 GSPGPAGVPGLPGAKGKERGDLGTRLHKGDVGLPGKPGSMDKVDMGSMKGEKGDQGEKGQ 1083
Query: 129 PGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------ 179
GP+ G P +PG + P PGP P + G AP LPGP +
Sbjct: 1084 TGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGVSGIPGAPGLPGPKGSTGGMGL 1143
Query: 180 ---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-----PGPSSAPDLPGPSSAP 225
+PG + P LPG A G + P + PG L G +P
Sbjct: 1144 PGMPGPKGVAGIPGLTGHPGLPGDKGAKGEKGQAGLPGIGIPGRPGEKGDQGLAGFPGSP 1203
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
G + +PG P PGP +P G +P LPG LPG P + G +
Sbjct: 1204 GEKGEKGSTGIPG---MPGAPGPKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEA 1260
Query: 286 SAPDLPGPSS 295
P PGP+
Sbjct: 1261 GLPGKPGPTG 1270
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 95/251 (37%), Gaps = 23/251 (9%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 83
PG P G + P PGP P + G AP LPGP + P +PGP +
Sbjct: 1096 PGTPGVPGKDGQAGHPGQPGPKGDPGVSGIPGAPGLPGPKGSTGGMGLPGMPGPKGVAGI 1155
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
PG + P LPG A G + P + P PG L G +P G +
Sbjct: 1156 PGLTGHPGLPGDKGAKGEKGQAGLPGI----GIPGRPGEKGDQGLAGFPGSPGEKGEKGS 1211
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
+PG P PGP +P G +P LPG LPG P + G + P PGP
Sbjct: 1212 TGIPG---MPGAPGPKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPGKPGP 1268
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
+ GP+ PG P G LPG P PG G P L
Sbjct: 1269 T------GPAGQKGEPGSDGIPGSVGEKGEAGLPG-RGFPGFPGSKGEKGSKGDVGFPGL 1321
Query: 264 PGPSSAPDLPG 274
G +P +PG
Sbjct: 1322 AG---SPGIPG 1329
>gi|130765193|gb|ABO32362.1| collagen alpha-1(X) chain precursor [Cervus nippon]
Length = 674
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 84/210 (40%), Gaps = 31/210 (14%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P PG P +PG PGP+ P PG P LPG L G LPG
Sbjct: 265 KPGAPGTPGQPGIPGMKGHSGAPGPAGLPGAPG-FGKPGLPG------LKGQRGPVGLPG 317
Query: 86 PSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
A GP+ P LPGPS GP P PG LPGP GP+
Sbjct: 318 SPGAKGEQGPAGHPGEAGLPGPSGNMGPQGPKGIPGNPG------LPGPKGEMGPVGPAG 371
Query: 143 APDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
P G + L PG P L GP P LPGP P + G +P LPGP
Sbjct: 372 NPGAKGERGSSGLDGKPGYPGEPGLNGPKGNPGLPGPKGDPGIAG---SPGLPGPV---- 424
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
GP+ A +PG + GP P +PG
Sbjct: 425 --GPAGAKGMPGHNGE---AGPRGVPGIPG 449
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 83/211 (39%), Gaps = 31/211 (14%)
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
P PG P +PG PGP+ P PG P LPG L G LP
Sbjct: 264 GKPGAPGTPGQPGIPGMKGHSGAPGPAGLPGAPG-FGKPGLPG------LKGQRGPVGLP 316
Query: 139 GPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
G A GP+ P LPGPS GP P PG LPGP GP+
Sbjct: 317 GSPGAKGEQGPAGHPGEAGLPGPSGNMGPQGPKGIPGNPG------LPGPKGEMGPVGPA 370
Query: 196 SAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
P G + L PG P L GP P LPGP P + G +P LPGP
Sbjct: 371 GNPGAKGERGSSGLDGKPGYPGEPGLNGPKGNPGLPGPKGDPGIAG---SPGLPGPV--- 424
Query: 253 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
GP+ A +PG + GP P +PG
Sbjct: 425 ---GPAGAKGMPGHNGE---AGPRGVPGIPG 449
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 82/203 (40%), Gaps = 31/203 (15%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +P +PG PGP+ P PG P LPG L G LPG A
Sbjct: 272 PGQPGIPGMKGHSGAPGPAGLPGAPG-FGKPGLPG------LKGQRGPVGLPGSPGAKGE 324
Query: 84 PGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
GP+ P LPGPS GP P PG LPGP GP+ P G
Sbjct: 325 QGPAGHPGEAGLPGPSGNMGPQGPKGIPGNPG------LPGPKGEMGPVGPAGNPGAKGE 378
Query: 141 SSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
+ L PG P L GP P LPGP P + G +P LPGP GP+ A
Sbjct: 379 RGSSGLDGKPGYPGEPGLNGPKGNPGLPGPKGDPGIAG---SPGLPGPV------GPAGA 429
Query: 198 PDLPGPSSAPDLPGPSSAPDLPG 220
+PG + GP P +PG
Sbjct: 430 KGMPGHNGE---AGPRGVPGIPG 449
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 68/168 (40%), Gaps = 24/168 (14%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSS 79
+P P L G LPG A GP+ P LPGPS GP P PG
Sbjct: 300 KPGLPGLKGQRGPVGLPGSPGAKGEQGPAGHPGEAGLPGPSGNMGPQGPKGIPGNPG--- 356
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPD 136
LPGP GP+ P G + L PG P L GP P LPGP P
Sbjct: 357 ---LPGPKGEMGPVGPAGNPGAKGERGSSGLDGKPGYPGEPGLNGPKGNPGLPGPKGDPG 413
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
+ G +P LPGP GP+ A +PG + GP P +PG
Sbjct: 414 IAG---SPGLPGPV------GPAGAKGMPGHNGE---AGPRGVPGIPG 449
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 98/359 (27%), Positives = 110/359 (30%), Gaps = 97/359 (27%)
Query: 19 TVTERPLEPDLPGPSSAPDLPGPS--------------------------SAPDLPGPSS 52
+ T +P P LPG L GP S P PGP
Sbjct: 103 SATGKPGLPGLPGKQGERGLNGPKGDIGPAGLPGPRGPPGPPGIPGPAGISVPGKPGPQG 162
Query: 53 APDLPGPSSAPDLPGPSSAPDLPGPSS-----APDLPGPSSAP----------------- 90
PGP P G P L G AP PG P
Sbjct: 163 PTGEPGPRGFPGEKGMQGVPGLNGQKGETGYCAPCRPGERGLPGPQGPTGPPGPPGVGKR 222
Query: 91 ---DLPGPSSAPDLPGPSSA--------------------------PDLPGPSSAPDLPG 121
LPG P L G P PG P +PG
Sbjct: 223 GDNGLPG---QPGLKGDQGVPGERGPAGPPGPQGPPGEQGPEGIGKPGAPGTPGQPGIPG 279
Query: 122 PSSAPDLPGPSSAPDLPGPSS--APDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGP 176
PGP+ P PG P L G LPG A GP+ P LPGP
Sbjct: 280 MKGHSGAPGPAGLPGAPGFGKPGLPGLKGQRGPVGLPGSPGAKGEQGPAGHPGEAGLPGP 339
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSA 233
S GP P PG LPGP GP+ P G + L PG
Sbjct: 340 SGNMGPQGPKGIPGNPG------LPGPKGEMGPVGPAGNPGAKGERGSSGLDGKPGYPGE 393
Query: 234 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P L GP P LPGP P + G P GP+ A +PG + GP P +PG
Sbjct: 394 PGLNGPKGNPGLPGPKGDPGIAGSPGLPGPVGPAGAKGMPGHNGE---AGPRGVPGIPG 449
>gi|296484185|tpg|DAA26300.1| TPA: collagen alpha-1(X) chain precursor [Bos taurus]
Length = 674
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 88/221 (39%), Gaps = 34/221 (15%)
Query: 60 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 119
P+ G AP +PG P +PG P PG + P PG P LPG L
Sbjct: 257 EQGPEGIGKPGAPGIPG---QPGIPGMKGQPGAPGTAGLPGAPG-FGKPGLPG------L 306
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
G LPG A GP+ P LPGPS GP P PG LPGP
Sbjct: 307 KGQRGPVGLPGSPGAKGEQGPAGHPGEAGLPGPSGNMGPQGPKGIPGNPG------LPGP 360
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 233
GP+ P G + L PG P L GP P LPGP P + G +
Sbjct: 361 KGEMGPVGPAGNPGAKGERGSSGLDGKPGYPGEPGLNGPKGNPGLPGPKGDPGIAG---S 417
Query: 234 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
P LPGP GP+ A +PG + GP P +PG
Sbjct: 418 PGLPGPV------GPAGAKGVPGHNGE---AGPRGVPGIPG 449
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 84/210 (40%), Gaps = 31/210 (14%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P PG P +PG P PG + P PG P LPG L G LPG
Sbjct: 265 KPGAPGIPGQPGIPGMKGQPGAPGTAGLPGAPG-FGKPGLPG------LKGQRGPVGLPG 317
Query: 86 PSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
A GP+ P LPGPS GP P PG LPGP GP+
Sbjct: 318 SPGAKGEQGPAGHPGEAGLPGPSGNMGPQGPKGIPGNPG------LPGPKGEMGPVGPAG 371
Query: 143 APDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
P G + L PG P L GP P LPGP P + G +P LPGP
Sbjct: 372 NPGAKGERGSSGLDGKPGYPGEPGLNGPKGNPGLPGPKGDPGIAG---SPGLPGPV---- 424
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
GP+ A +PG + GP P +PG
Sbjct: 425 --GPAGAKGVPGHNGE---AGPRGVPGIPG 449
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 82/203 (40%), Gaps = 31/203 (15%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +P +PG P PG + P PG P LPG L G LPG A
Sbjct: 272 PGQPGIPGMKGQPGAPGTAGLPGAPG-FGKPGLPG------LKGQRGPVGLPGSPGAKGE 324
Query: 84 PGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
GP+ P LPGPS GP P PG LPGP GP+ P G
Sbjct: 325 QGPAGHPGEAGLPGPSGNMGPQGPKGIPGNPG------LPGPKGEMGPVGPAGNPGAKGE 378
Query: 141 SSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
+ L PG P L GP P LPGP P + G +P LPGP GP+ A
Sbjct: 379 RGSSGLDGKPGYPGEPGLNGPKGNPGLPGPKGDPGIAG---SPGLPGPV------GPAGA 429
Query: 198 PDLPGPSSAPDLPGPSSAPDLPG 220
+PG + GP P +PG
Sbjct: 430 KGVPGHNGE---AGPRGVPGIPG 449
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 105/303 (34%), Gaps = 50/303 (16%)
Query: 34 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-----APDLPGPSSAPDLP---- 84
S P PGP PGP P G S P L G P PG P
Sbjct: 153 SVPGKPGPQGPTGEPGPRGFPGEKGTSGVPGLNGQKGEMGHCTPCRPGERGLPGPQGPTG 212
Query: 85 ----------GPSSAPDLPGPSSAPDLPGPSSA--------------PDLPGPSSAPDLP 120
G + P PG +PG A P+ G AP +P
Sbjct: 213 PPGPPGVGKRGENGLPGQPGLKGDQGVPGERGAAGPSGPQGPPGEQGPEGIGKPGAPGIP 272
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--APDLPGPSSAPDLPGPSSAPDLPGPSS 178
G P +PG P PG + P PG P L G LPG A GP+
Sbjct: 273 G---QPGIPGMKGQPGAPGTAGLPGAPGFGKPGLPGLKGQRGPVGLPGSPGAKGEQGPAG 329
Query: 179 AP---DLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PG 229
P LPGPS GP P LPGP GP+ P G + L PG
Sbjct: 330 HPGEAGLPGPSGNMGPQGPKGIPGNPGLPGPKGEMGPVGPAGNPGAKGERGSSGLDGKPG 389
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
P L GP P LPGP P + G P GP+ A +PG + GP P
Sbjct: 390 YPGEPGLNGPKGNPGLPGPKGDPGIAGSPGLPGPVGPAGAKGVPGHNGE---AGPRGVPG 446
Query: 290 LPG 292
+PG
Sbjct: 447 IPG 449
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 68/168 (40%), Gaps = 24/168 (14%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSS 79
+P P L G LPG A GP+ P LPGPS GP P PG
Sbjct: 300 KPGLPGLKGQRGPVGLPGSPGAKGEQGPAGHPGEAGLPGPSGNMGPQGPKGIPGNPG--- 356
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPD 136
LPGP GP+ P G + L PG P L GP P LPGP P
Sbjct: 357 ---LPGPKGEMGPVGPAGNPGAKGERGSSGLDGKPGYPGEPGLNGPKGNPGLPGPKGDPG 413
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
+ G +P LPGP GP+ A +PG + GP P +PG
Sbjct: 414 IAG---SPGLPGPV------GPAGAKGVPGHNGE---AGPRGVPGIPG 449
>gi|297710743|ref|XP_002832024.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-6(IV) chain [Pongo
abelii]
Length = 1694
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 86/248 (34%), Gaps = 12/248 (4%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
+ V+ +P P G P L G S PG G +P LPG S P L
Sbjct: 1012 IIKGVSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLK 1071
Query: 76 GPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
G + PGP P G G PG G S LPG
Sbjct: 1072 GDNGQTVEISGSPGPKGQPGESGLKGTKGRDGLIGNIGFPGNKGEDGKIGVSGDVGLPGA 1131
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
P + G P L G S GP +P L GP P PG LPG
Sbjct: 1132 PGFPGVAGMRGEPGLQGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGT 1191
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
PGPS +PGP+ LPGP PG AP PG G P L GP+
Sbjct: 1192 PGPSIT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAG 1244
Query: 251 APDLPGPS 258
P PG S
Sbjct: 1245 LPGAPGIS 1252
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 112/310 (36%), Gaps = 40/310 (12%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 664 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGTKGEPGSPGLVHLPELPGFPGPR 720
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G S L G +
Sbjct: 721 GEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAESGAPGEQGLQGLTG 774
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
G S P L G P L GP +P PG P PG S + G S P
Sbjct: 775 DKGFLGDSGLPGLKGVHGKPGLLGPKGEQGSPGTPGQVGQPGTPGSSGPYGIKGKSGLP- 833
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 834 -----GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPG------LVGLKG 882
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSY 301
+P PG + P L G G P +PG P +PG +PG +
Sbjct: 883 SPGSPGVAGLPALSGSKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSAGK----- 934
Query: 302 LGEAGHQKSP 311
+G +GH +P
Sbjct: 935 MGPSGHAGTP 944
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 92/257 (35%), Gaps = 35/257 (13%)
Query: 47 LPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 103
LPG P G P P GPS P PG PGP + LPG P G
Sbjct: 644 LPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPG------FPGPKGSRGLPGTPGQPGSSG 697
Query: 104 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 163
P PG P+LPG PGP LPG P LPG LPG +P
Sbjct: 698 TKGEPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPG 745
Query: 164 LPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---A 215
LPG A D+ G S L G + G S P L G P L GP +
Sbjct: 746 LPGSKGATGDIFGAESGAPGEQGLQGLTGDKGFLGDSGLPGLKGVHGKPGLLGPKGEQGS 805
Query: 216 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 275
P PG P PG S + G S P AP PG S P G PG
Sbjct: 806 PGTPGQVGQPGTPGSSGPYGIKGKSGLP------GAPGFPGISGHPGKKGTRGKKGPPGS 859
Query: 276 SSAPDLPGPSSAPDLPG 292
LPG P PG
Sbjct: 860 IVKKGLPGLKGLPGNPG 876
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 69/193 (35%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG LPG + + G P +PG S + + G +P LPG S
Sbjct: 1013 IKGVSGKPGPPGFMGIRGLPGLKGSSGITG---FPGMPGESGSQGIRG---SPGLPGASG 1066
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P L G + PGP P G G PG G S
Sbjct: 1067 LPGLKGDNGQTVEISGSPGPKGQPGESGLKGTKGRDGLIGNIGFPGNKGEDGKIGVSGDV 1126
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
LPG P + G P L G S GP +P L GP P PG LPG
Sbjct: 1127 GLPGAPGFPGVAGMRGEPGLQGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTK 1186
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1187 GTHGTPGPSITGV 1199
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 99/277 (35%), Gaps = 32/277 (11%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPS 78
+ P P PGP LPG P LPG LPG +P LPG A D+ G
Sbjct: 707 LVHLPELPGFPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAE 760
Query: 79 SA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGP 131
S L G + G S P L G P L GP +P PG P PG
Sbjct: 761 SGAPGEQGLQGLTGDKGFLGDSGLPGLKGVHGKPGLLGPKGEQGSPGTPGQVGQPGTPGS 820
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
S + G S P AP PG S P G PG LPG P
Sbjct: 821 SGPYGIKGKSGLP------GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGN 874
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
PG L G +P PG + P L G G P +PG P +PG
Sbjct: 875 PG------LVGLKGSPGSPGVAGLPALSGSKGEKGSVGFVGFPGIPG---LPGIPGTRGL 925
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
+PG SA + GPS PG PGP P
Sbjct: 926 KGIPG--SAGKM-GPSGHAGTPGEKGDRGNPGPVGIP 959
>gi|380795065|gb|AFE69408.1| collagen alpha-2(IV) chain preproprotein, partial [Macaca mulatta]
Length = 1688
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 102/301 (33%), Gaps = 25/301 (8%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PGP +PG LPG P G P +PG P LPG S P L GP
Sbjct: 757 PGPRGDAGVPGQPGFKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGASGQPGLSGPPGQ 816
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
PG AP GP P +PG P G PGP + G L G
Sbjct: 817 HGFPG---APGQEGPLGLPGIPGLEGLPGDRGDPGDIGAPGPVGMKGVSGDRGDAGLAGE 873
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SA 206
P PG +PG P L G +P + G P L G P G +
Sbjct: 874 RGHPGSPGFKGIDGMPG---TPGLKGERGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGI 930
Query: 207 PDLPGPSSAPDLPGPSS--------------APDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
P L G + P G D+ G G G P
Sbjct: 931 PGLKGLAGEPGFKGSRGDPGPPGPPPIILPGMKDIKGEKGDEGPMGLKGYLGAKGIQGMP 990
Query: 253 DLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSTVLGSYLGEAGHQKS 310
+PG S P LPG P + G AP +PG P + G P T ++G G + +
Sbjct: 991 GIPGLSGIPGLPGRPGHIKGVKGDIGAPGIPGLPGFPGVAGPPGITGFPGFIGSRGDKGA 1050
Query: 311 P 311
P
Sbjct: 1051 P 1051
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 84/260 (32%), Gaps = 30/260 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-- 81
P +PG P LPG S P L PG P PG LPG LPG P
Sbjct: 790 PGMPGLKGQPGLPGASGQPGLSGPPGQHGFPGAPGQEGPLGLPGIPGLEGLPGDRGDPGD 849
Query: 82 -DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
PGP + G L G P PG +PG P L G +P + G
Sbjct: 850 IGAPGPVGMKGVSGDRGDAGLAGERGHPGSPGFKGIDGMPG---TPGLKGERGSPGMDGF 906
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS------------- 187
P L G P PG G P L G + P G
Sbjct: 907 QGMPGLKG---RPGFPGSKGEAGFFG---IPGLKGLAGEPGFKGSRGDPGPPGPPPIILP 960
Query: 188 -APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDL 245
D+ G G G P +PG S P LPG P + G AP +
Sbjct: 961 GMKDIKGEKGDEGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGHIKGVKGDIGAPGI 1020
Query: 246 PGPSSAPDLPGPSSAPDLPG 265
PG P + GP PG
Sbjct: 1021 PGLPGFPGVAGPPGITGFPG 1040
>gi|449508319|ref|XP_002191828.2| PREDICTED: collagen alpha-1(XXIV) chain [Taeniopygia guttata]
Length = 2316
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 92/270 (34%), Gaps = 28/270 (10%)
Query: 26 EPDLPGP-SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 84
E PG ++ P LPGP P G PG G LPG
Sbjct: 1791 EKGYPGEDNTIPGLPGPIGEPGQSGERGDKGEPGDEGYKGYTG------LPGHRGPIGQQ 1844
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPS 141
GP P PG L G + G AP G + P PGP + PGP
Sbjct: 1845 GP---PGEPGELGEQGLKGERGSEGPTGKKGAPGQAGKAGVPGKPGPPGQTGIVGYPGPE 1901
Query: 142 SAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
P PG + PGP LPG + P GP P +PGP AP L G
Sbjct: 1902 GIPGNPGKTGLSGKPGPKGNKGNSGLPGLAGYPGARGPKGLPGMPGPMGAPGLKGEKGLL 1961
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDL--- 254
PG LPG +P GP+ A L G G PGP A D+
Sbjct: 1962 GHPGKRGKRGLPG---SPGDQGPAGATGLKGQIGEDGDQGLMGFQGFPGPKGPAGDIGLV 2018
Query: 255 -----PGPSSAPDLPGPSSAPDLPGPSSAP 279
GP+ GP + GP+ P
Sbjct: 2019 GILGPKGPTGQVGYIGPVGQEGIAGPTGRP 2048
>gi|323450255|gb|EGB06137.1| hypothetical protein AURANDRAFT_65843 [Aureococcus anophagefferens]
Length = 3712
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 147/244 (60%), Gaps = 24/244 (9%)
Query: 73 DLPGPSSA-PDLPGPSSAPDLPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-D 127
D P P++ D P P+++P + P++A D P P++A D P P++A D P P++A D
Sbjct: 3077 DAPAPTAGFVDAPAPTASP-VAAPTAATVDAPAPTAATVDAPAPTAATVDAPAPTAATVD 3135
Query: 128 LPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-D 181
P P++A D P P++A D P P++A D P P++A D P P++A D P P++A D
Sbjct: 3136 APAPTAATVDAPAPTAATVDAPAPTAATVDAPSPTAATVDAPAPTAATVDAPAPTAATVD 3195
Query: 182 LPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-D 235
P P++A D P P++A D P P++A D P P++A D P P++A D P P++A D
Sbjct: 3196 APAPTAATVDAPAPTAATVDAPAPTAATIDAPAPTAATVDAPAPTAATVDAPAPTTATVD 3255
Query: 236 LPGPSSAP-DLPGPSSAP-DLPGPSSAPDLPGPSSAP-DLPGPSSAP-DLPGPSSAP-DL 290
P P++A D P P++A D P P+++P + P++A D P P++A D P P++A D
Sbjct: 3256 APAPTAATVDAPAPTAATVDAPAPTASP-VAAPTAATVDAPAPTAATVDAPAPTAATVDA 3314
Query: 291 PGPS 294
P P+
Sbjct: 3315 PAPT 3318
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 142/234 (60%), Gaps = 23/234 (9%)
Query: 28 DLPGPSSAPDLPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-D 82
D P P+++P + P++A D P P++A D P P++A D P P++A D P P++A D
Sbjct: 3087 DAPAPTASP-VAAPTAATVDAPAPTAATVDAPAPTAATVDAPAPTAATVDAPAPTAATVD 3145
Query: 83 LPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-D 136
P P++A D P P++A D P P++A D P P++A D P P++A D P P++A D
Sbjct: 3146 APAPTAATVDAPAPTAATVDAPSPTAATVDAPAPTAATVDAPAPTAATVDAPAPTAATVD 3205
Query: 137 LPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-D 190
P P++A D P P++A D P P++A D P P++A D P P++A D P P++A D
Sbjct: 3206 APAPTAATVDAPAPTAATIDAPAPTAATVDAPAPTAATVDAPAPTTATVDAPAPTAATVD 3265
Query: 191 LPGPSSAP-DLPGPSSAPDLPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPS 240
P P++A D P P+++P + P++A D P P++A D P P++A D P P+
Sbjct: 3266 APAPTAATVDAPAPTASP-VAAPTAATVDAPAPTAATVDAPAPTAATVDAPAPT 3318
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 137/228 (60%), Gaps = 22/228 (9%)
Query: 91 DLPGPSSA-PDLPGPSSAPDLPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-D 145
D P P++ D P P+++P + P++A D P P++A D P P++A D P P++A D
Sbjct: 3077 DAPAPTAGFVDAPAPTASP-VAAPTAATVDAPAPTAATVDAPAPTAATVDAPAPTAATVD 3135
Query: 146 LPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-D 199
P P++A D P P++A D P P++A D P P++A D P P++A D P P++A D
Sbjct: 3136 APAPTAATVDAPAPTAATVDAPAPTAATVDAPSPTAATVDAPAPTAATVDAPAPTAATVD 3195
Query: 200 LPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-DLPGPSSAP-D 253
P P++A D P P++A D P P++A D P P++A D P P++A D P P++A D
Sbjct: 3196 APAPTAATVDAPAPTAATVDAPAPTAATIDAPAPTAATVDAPAPTAATVDAPAPTTATVD 3255
Query: 254 LPGPSSAP-DLPGPSSAP-DLPGPSSAPDLPGPSSAP-DLPGPSSTVL 298
P P++A D P P++A D P P+++P + P++A D P P++ +
Sbjct: 3256 APAPTAATVDAPAPTAATVDAPAPTASP-VAAPTAATVDAPAPTAATV 3302
>gi|326923363|ref|XP_003207906.1| PREDICTED: collagen alpha-1(IV) chain-like [Meleagris gallopavo]
Length = 1670
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 103/307 (33%), Gaps = 44/307 (14%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPD 82
+P +PG P LPGP + L G + A G P LPG P LPG +
Sbjct: 851 QPGVPGSVGLPGLPGPQGSVGLKGSAGAKGEMGVMGTPGLPGTPGPIGDRGLPGEKGSQG 910
Query: 83 LP---GPSSAPDLPGPSSAPDLPGPSSAPDL------------PGPSSAPDLPGPSSAPD 127
L GP P + G LPG + D PG LPG
Sbjct: 911 LKGVVGPQGDPGVKGDKGEAGLPGEPGSMDTMDMVSLKGQKGDPGEKGDLGLPGEKG--- 967
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---------------APDLPGPSSAPD 172
L G P +PG P PG PGP G P
Sbjct: 968 LRGEYGEPGIPGRDGEPGTPG------QPGPKGDQGPPGYPGDPGIPGQKGSVGEMGLPG 1021
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL--PGPSSAPDLPGPSSAPDLPGP 230
PG P +PG P PG G + P + PG PG +P L G
Sbjct: 1022 TPGEKGLPGIPGSPGTPGFPGQKGEKGDKGAAGFPGIGFPGSPGEKGEPGRIGSPGLSGD 1081
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
G P PGP +P + G P L G LPG S P L G P +
Sbjct: 1082 KGEKGNAGIPGMPGSPGPKGSPGMAGFPGNPGLHGAKGEKGLPGLSGIPGLKGEPGEPGV 1141
Query: 291 PGPSSTV 297
PGP+ ++
Sbjct: 1142 PGPAGSI 1148
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 76/216 (35%), Gaps = 5/216 (2%)
Query: 63 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL--PGPSSAPDLPGPSSAPDLP 120
P PG P +PG P PG G + P + PG PG +P L
Sbjct: 1020 PGTPGEKGLPGIPGSPGTPGFPGQKGEKGDKGAAGFPGIGFPGSPGEKGEPGRIGSPGLS 1079
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
G G P PGP +P + G P L G LPG S P L G P
Sbjct: 1080 GDKGEKGNAGIPGMPGSPGPKGSPGMAGFPGNPGLHGAKGEKGLPGLSGIPGLKGEPGEP 1139
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPG 238
+PGP+ + G +PG + A G P PG G P PG
Sbjct: 1140 GVPGPAGSIGQKGEPGYDGIPGTAGAKGEQGAPGKGFPGFPGAKGDKGAKGEVGFPGSPG 1199
Query: 239 PSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP 273
P L G PGP LPG P SA + P
Sbjct: 1200 IPGIPGLKGEQGYAGPPGPKGNQGLPGLPGSAIEGP 1235
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 76/216 (35%), Gaps = 5/216 (2%)
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL--PGPSSAPDLPGPSSAPDLP 138
P PG P +PG P PG G + P + PG PG +P L
Sbjct: 1020 PGTPGEKGLPGIPGSPGTPGFPGQKGEKGDKGAAGFPGIGFPGSPGEKGEPGRIGSPGLS 1079
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G G P PGP +P + G P L G LPG S P L G P
Sbjct: 1080 GDKGEKGNAGIPGMPGSPGPKGSPGMAGFPGNPGLHGAKGEKGLPGLSGIPGLKGEPGEP 1139
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPG 256
+PGP+ + G +PG + A G P PG G P PG
Sbjct: 1140 GVPGPAGSIGQKGEPGYDGIPGTAGAKGEQGAPGKGFPGFPGAKGDKGAKGEVGFPGSPG 1199
Query: 257 PSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP 291
P L G PGP LPG P SA + P
Sbjct: 1200 IPGIPGLKGEQGYAGPPGPKGNQGLPGLPGSAIEGP 1235
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 62/172 (36%), Gaps = 3/172 (1%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P E PG +P L G G P PGP +P + G P L G L
Sbjct: 1064 PGEKGEPGRIGSPGLSGDKGEKGNAGIPGMPGSPGPKGSPGMAGFPGNPGLHGAKGEKGL 1123
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPS 141
PG S P L G P +PGP+ + G +PG + A G P PG
Sbjct: 1124 PGLSGIPGLKGEPGEPGVPGPAGSIGQKGEPGYDGIPGTAGAKGEQGAPGKGFPGFPGAK 1183
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP 192
G P PG P L G PGP LPG P SA + P
Sbjct: 1184 GDKGAKGEVGFPGSPGIPGIPGLKGEQGYAGPPGPKGNQGLPGLPGSAIEGP 1235
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 99/303 (32%), Gaps = 68/303 (22%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLP 84
P LPG P L G P L G P LPGP P +PGP+ P G P L
Sbjct: 708 PGLPGTPGTPGLDGFPGTPGLQGQKGEPGVGLPGPKGLPGIPGPAGIPGEKGNPGLPGLR 767
Query: 85 GPSSAPDLPGPSSA---PDLPG-----------------------------PSSAPDLPG 112
G P +PG P LPG P P + G
Sbjct: 768 GEQGFPGVPGQQGFRGDPGLPGLQGLPGPQGSPGVGPPGLPGPAGQPGPEGPPGFPGIKG 827
Query: 113 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 172
P +PG D PGP G P +PG P LPGP + L G + A
Sbjct: 828 ERGFPGIPGL----DRPGPKGDK---GSQGQPGVPGSVGLPGLPGPQGSVGLKGSAGAKG 880
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPG 229
G P LPG PGP LPG + L G P P + G LPG
Sbjct: 881 EMGVMGTPGLPG------TPGPIGDRGLPGEKGSQGLKGVVGPQGDPGVKGDKGEAGLPG 934
Query: 230 PSSAPDL------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPG 274
+ D PG LPG L G P +PG P PG
Sbjct: 935 EPGSMDTMDMVSLKGQKGDPGEKGDLGLPGEKG---LRGEYGEPGIPGRDGEPGTPGQPG 991
Query: 275 PSS 277
P
Sbjct: 992 PKG 994
>gi|302836407|ref|XP_002949764.1| hypothetical protein VOLCADRAFT_90121 [Volvox carteri f.
nagariensis]
gi|300265123|gb|EFJ49316.1| hypothetical protein VOLCADRAFT_90121 [Volvox carteri f.
nagariensis]
Length = 672
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 95/274 (34%), Gaps = 3/274 (1%)
Query: 19 TVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 78
T ++P+ P+ P P P AP P P P +AP P P P
Sbjct: 218 TAPKQPMAPEQPKAPEQPTAPQQPKAPKQPKAPKQPKAPEQPTAPKQPKAPKLPKAPEQP 277
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
+AP P P P P+ P P P AP+ P P P AP+ P
Sbjct: 278 TAPKQPKAPKQPKAPKQPKGPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQP 337
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
P P AP+ P P P AP+ P P P AP+ P P
Sbjct: 338 TAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQPTAPKQP 397
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
P AP+ P P P AP+ P P P AP+ P +AP LP
Sbjct: 398 KAPKQPKAPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQP---TAPKLPKAP 454
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P P +AP P P P +AP P
Sbjct: 455 KQPKAPEQPTAPKQPKAPKQPKAPEQPTAPKQPK 488
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 93/273 (34%), Gaps = 3/273 (1%)
Query: 19 TVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 78
T ++P P P P P +AP P P P +AP P P P
Sbjct: 236 TAPQQPKAPKQPKAPKQPKAPEQPTAPKQPKAPKLPKAPEQPTAPKQPKAPKQPKAPKQP 295
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
P+ P P P AP+ P P P AP+ P P P AP+ P
Sbjct: 296 KGPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQP 355
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
P P AP+ P P P AP+ P P P AP+ P P
Sbjct: 356 TAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQPTAPKQP 415
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
P AP+ P P P AP+ P +AP LP P P +AP P
Sbjct: 416 KAPKQPKAPEQPTAPKQPKAPKQPKAPEQP---TAPKLPKAPKQPKAPEQPTAPKQPKAP 472
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
P P +AP P P P AP P
Sbjct: 473 KQPKAPEQPTAPKQPKAPEQPKAPRQPKAPKQP 505
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 93/269 (34%), Gaps = 6/269 (2%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +P P AP P P P +AP P P P +AP P P
Sbjct: 232 PEQPTAPQQPKAPKQPKAPKQPKAPEQPTAPKQPKAPKLPKAPEQPTAPKQPKAPKQPKA 291
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
P P+ P P P AP+ P P P AP+ P P P A
Sbjct: 292 PKQPKGPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKA 351
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
P+ P P P AP+ P P P AP+ P P P AP+ P
Sbjct: 352 PEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQPTA 411
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
P P AP+ P P P AP+ P +AP LP P P +AP
Sbjct: 412 PKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQP---TAPKLPKAPKQPKAPEQPTAPKQ 468
Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P P P +AP P AP+ P
Sbjct: 469 PKAPKQPKAPEQPTAPKQP---KAPEQPK 494
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 90/270 (33%), Gaps = 3/270 (1%)
Query: 22 ERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
E+P P P P P P+ P P P AP+ P P P AP
Sbjct: 275 EQPTAPKQPKAPKQPKAPKQPKGPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAP 334
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
+ P P P AP+ P P P AP+ P P P AP+ P
Sbjct: 335 EQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQPTAP 394
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
P P AP+ P P P AP+ P P P AP+ P +AP LP
Sbjct: 395 KQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQP---TAPKLP 451
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
P P +AP P P P +AP P P P AP P P
Sbjct: 452 KAPKQPKAPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPEQPKAPRQPKAPKQPLAPKQP 511
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
P AP P P P AP P
Sbjct: 512 KAPKQPLAPKQPKAPEQPTAPKQPKAPKQP 541
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 90/259 (34%), Gaps = 6/259 (2%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +P P AP+ P P P AP+ P P P AP+ P P
Sbjct: 304 PKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQPTAPKQPKA 363
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
P AP+ P P P AP+ P P P AP+ P P P A
Sbjct: 364 PKQPKAPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKA 423
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
P+ P P P AP+ P +AP LP P P +AP P P P
Sbjct: 424 PEQPTAPKQPKAPKQPKAPEQP---TAPKLPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQ 480
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
+AP P AP+ P P P AP P P P AP+ P P
Sbjct: 481 PTAPKQP---KAPEQPKAPRQPKAPKQPLAPKQPKAPKQPLAPKQPKAPEQPTAPKQPKA 537
Query: 264 PGPSSAPDLPGPSSAPDLP 282
P AP P P +P
Sbjct: 538 PKQPLAPKQPKAPKQPQIP 556
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 94/270 (34%), Gaps = 6/270 (2%)
Query: 22 ERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
++P P+ P P P AP+ P P P AP+ P P P AP
Sbjct: 293 KQPKGPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAP 352
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
+ P P P AP+ P P P AP+ P P P AP+ P
Sbjct: 353 EQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQPTAP 412
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
P P AP+ P P P AP+ P +AP LP P P +AP P
Sbjct: 413 KQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQP---TAPKLPKAPKQPKAPEQPTAPKQP 469
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
P P +AP P AP+ P P P AP P P P AP
Sbjct: 470 KAPKQPKAPEQPTAPKQP---KAPEQPKAPRQPKAPKQPLAPKQPKAPKQPLAPKQPKAP 526
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
+ P P P AP P P +P
Sbjct: 527 EQPTAPKQPKAPKQPLAPKQPKAPKQPQIP 556
>gi|344264489|ref|XP_003404324.1| PREDICTED: collagen alpha-1(X) chain-like [Loxodonta africana]
Length = 680
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 87/212 (41%), Gaps = 31/212 (14%)
Query: 66 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
PGP+ AP PG +PG P PG + AP PG P LPG L G
Sbjct: 266 PGPTGAPGQPG------IPGAKGHPGAPGIAGAPGAPG-FGKPGLPG------LKGQRGP 312
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
LPG A GP+ P PG + P GP +PG +PG GP
Sbjct: 313 VGLPGSPGAKGEQGPAGLPGEPGLTGPPGNMGPQGPKGIPGNHG---IPGAKGETGPAGP 369
Query: 186 SSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
+ P G P L PG + P L GP P LPGP + G +P L GP
Sbjct: 370 AGYPGAKGERGPPGLDGKPGYAGEPGLNGPKGDPGLPGPKGDSGVRG---SPGLLGPM-- 424
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
GP+ A +PG + PGP AP +PG
Sbjct: 425 ----GPAGAKGVPGLNGE---PGPRGAPGIPG 449
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P P L G LPG A GP+ P PG + P GP +PG
Sbjct: 300 KPGLPGLKGQRGPVGLPGSPGAKGEQGPAGLPGEPGLTGPPGNMGPQGPKGIPGNHG--- 356
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+PG GP+ P G P L PG + P L GP P LPGP + G
Sbjct: 357 IPGAKGETGPAGPAGYPGAKGERGPPGLDGKPGYAGEPGLNGPKGDPGLPGPKGDSGVRG 416
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
+P L GP GP+ A +PG + PGP AP +PG
Sbjct: 417 ---SPGLLGPM------GPAGAKGVPGLNGE---PGPRGAPGIPG 449
>gi|363736216|ref|XP_003641684.1| PREDICTED: collagen alpha-1(XXVIII) chain [Gallus gallus]
Length = 1212
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 103/347 (29%), Gaps = 82/347 (23%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E LPGP+ G P L G P L G + G S G PG
Sbjct: 228 ERGLPGPAGKKGRTGDDGTPGLKGAKGEPGLNGIPGRDGIEGKSGYKGEKGERGECGSPG 287
Query: 86 PS--SAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-----------SAPDLPGP 131
P+ P GP L GP P GP P G + LPGP
Sbjct: 288 TKGDKGPEGPIGPRGTRGLQGPQGQPGDQGPEGLPGSKGERGLPGPPGLPGETGIGLPGP 347
Query: 132 SSAPDLPG-----------------PSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSAPD 172
L G P + G P LPG GP A
Sbjct: 348 KGDTGLTGRPGPVGPPGVGEPGVLGPQGPQGVQGERGLPGEGLPGAKGDRGFDGPKGARG 407
Query: 173 LPGPSSAPD-------------------------LPGPSS--------APDLPGPSSAPD 199
LPG S + + GP LPGP
Sbjct: 408 LPGISIKGEKGEFGPPGLPGPIGLPGIGIQGEKGVEGPKGPPGSRGLPGQGLPGPKGEQG 467
Query: 200 LPGPSSAPDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
LPG + P PG P L G + P LPG AP G P L GP AP +
Sbjct: 468 LPGETGVPGERGIGEPGSKGEPGLSGLAGLPGLPGEDGAPGQKGEPGLPGLRGPEGAPGV 527
Query: 255 --------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
G L GP+ +PGP+ A PG +PGP
Sbjct: 528 GIQGEKGDQGQRGIRGLTGPTG---VPGPAGAKGEPGVPGRLGMPGP 571
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 96/298 (32%), Gaps = 54/298 (18%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-----------SAPDLPGPSSAPDLPGPSS 79
GP L GP P GP P G + LPGP L G
Sbjct: 299 GPRGTRGLQGPQGQPGDQGPEGLPGSKGERGLPGPPGLPGETGIGLPGPKGDTGLTGRPG 358
Query: 80 APDLP--------GPSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPD-- 127
P GP + G P LPG GP A LPG S +
Sbjct: 359 PVGPPGVGEPGVLGPQGPQGVQGERGLPGEGLPGAKGDRGFDGPKGARGLPGISIKGEKG 418
Query: 128 -----------------LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
+ G GP + LPG LPGP LPG +
Sbjct: 419 EFGPPGLPGPIGLPGIGIQGEKGVEGPKGPPGSRGLPGQG----LPGPKGEQGLPGETGV 474
Query: 171 PDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P PG P L G + P LPG AP G P L GP AP +
Sbjct: 475 PGERGIGEPGSKGEPGLSGLAGLPGLPGEDGAPGQKGEPGLPGLRGPEGAPGVGIQGEKG 534
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
D G L GP+ +PGP+ A PG +PGP +PGP LPG
Sbjct: 535 D-QGQRGIRGLTGPTG---VPGPAGAKGEPGVPGRLGMPGPPGRA-VPGPKGDIGLPG 587
Score = 38.1 bits (87), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 86/314 (27%), Gaps = 82/314 (26%)
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 141
LPGP+ G P L G P L G + G S G PG
Sbjct: 231 LPGPAGKKGRTGDDGTPGLKGAKGEPGLNGIPGRDGIEGKSGYKGEKGERGECGSPGTKG 290
Query: 142 -SAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-----------SAPDLPGPSSA 188
P+ P GP L GP P GP P G + LPGP
Sbjct: 291 DKGPEGPIGPRGTRGLQGPQGQPGDQGPEGLPGSKGERGLPGPPGLPGETGIGLPGPKGD 350
Query: 189 PDLPGPSS----------------------------APDLPGPSSAPDLPGPSSAPDLPG 220
L G LPG GP A LPG
Sbjct: 351 TGLTGRPGPVGPPGVGEPGVLGPQGPQGVQGERGLPGEGLPGAKGDRGFDGPKGARGLPG 410
Query: 221 PSSAPD-------------------------LPGPSS--------APDLPGPSSAPDLPG 247
S + + GP LPGP LPG
Sbjct: 411 ISIKGEKGEFGPPGLPGPIGLPGIGIQGEKGVEGPKGPPGSRGLPGQGLPGPKGEQGLPG 470
Query: 248 PSSAP-----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL 302
+ P PG P L G + P LPG AP G P L GP
Sbjct: 471 ETGVPGERGIGEPGSKGEPGLSGLAGLPGLPGEDGAPGQKGEPGLPGLRGPEGAPGVGIQ 530
Query: 303 GEAG--HQKSPKGL 314
GE G Q+ +GL
Sbjct: 531 GEKGDQGQRGIRGL 544
>gi|397497896|ref|XP_003819739.1| PREDICTED: collagen alpha-6(IV) chain isoform 4 [Pan paniscus]
Length = 1630
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 106/289 (36%), Gaps = 35/289 (12%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPS---SAPDLPGPSSA 80
P LPGP LPG LPG P G P P GPS P PGP +
Sbjct: 620 PGLPGPRG---LPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGS 676
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
LPG P G P PG P+LPG PGP LPG P LPG
Sbjct: 677 RGLPGTPGQPGSSGTKGEPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGK 727
Query: 141 SSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPS 195
LPG +P LPG A D+ G + L G + G S P L G
Sbjct: 728 DG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVH 784
Query: 196 SAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPS 249
P L GP +P PG P PG S + G S AP PG S P G
Sbjct: 785 GKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTR 844
Query: 250 SAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
PG LPG P L G +P PG + P L GP
Sbjct: 845 GKKGPPGSIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKG 893
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 107/296 (36%), Gaps = 35/296 (11%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 657 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGTKGEPGSPGLVHLPELPGFPGPR 713
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 714 GEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 767
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
G S P L G P L GP +P PG P PG S + G S P
Sbjct: 768 HKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLP- 826
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 827 -----GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPG------LVGLKG 875
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+P PG + P L GP G P +PG P +PG +PG + +
Sbjct: 876 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGKM 928
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 68/176 (38%), Gaps = 28/176 (15%)
Query: 118 DLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
PG P LPG P LPG + P LPGP LPG LPG P
Sbjct: 592 GFPGEKGLPGLPGEKGHLGPPGLPG-NGLPGLPGPRG---LPGDKGKDGLPGQQGLPGSK 647
Query: 175 G---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
G P P GPS P PG PGP + LPG P G P PG
Sbjct: 648 GITLPCIIPGSYGPSGFPGTPG------FPGPKGSRGLPGTPGQPGSSGTKGEPGSPGLV 701
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 287
P+LPG PGP LPG P LPG LPG +P LPG A
Sbjct: 702 HLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGA 745
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 99/277 (35%), Gaps = 32/277 (11%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPS 78
+ P P PGP LPG P LPG LPG +P LPG A D+ G
Sbjct: 700 LVHLPELPGFPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAE 753
Query: 79 SA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGP 131
+ L G + G S P L G P L GP +P PG P PG
Sbjct: 754 NGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGS 813
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
S + G S P AP PG S P G PG LPG P
Sbjct: 814 SGPYGIKGKSGLP------GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGN 867
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
PG L G +P PG + P L GP G P +PG P +PG
Sbjct: 868 PG------LVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGL 918
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
+PG + GPS+ PG PGP P
Sbjct: 919 KGIPGSTGK---MGPSARAGTPGEKGDRGNPGPVGIP 952
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 78/223 (34%), Gaps = 13/223 (5%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
+ V+ +P P G P L G S PG G +P LPG S P L
Sbjct: 1005 IIKGVSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLK 1064
Query: 76 GPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
G + PGP P G G PG G S LPG
Sbjct: 1065 GDNGQTVEISSSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGA 1124
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAP 189
P + G P LPG S GP +P L GP S +PGP+ LPGP
Sbjct: 1125 PGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGPSITGVPGPAG---LPGPKGEK 1181
Query: 190 DLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
PG AP PG G P L GP+ P PG S
Sbjct: 1182 GYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAGLPGAPGIS 1221
>gi|89894623|ref|YP_518110.1| hypothetical protein DSY1877 [Desulfitobacterium hafniense Y51]
gi|89334071|dbj|BAE83666.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 658
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 85/242 (35%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 91
PS +P PS P PS P PS P PS P PS P PS
Sbjct: 125 PSDGKGVPVPSDGKGTPVPSDGKGAPVPSDGKGAPVPSDGKGAPVPSDGKSTPVPSDGKS 184
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
P PS +P PS +P PS P PS P PS P PS P PS
Sbjct: 185 TPVPSDGKGVPVPSDGKGVPVPSDGKGTPVPSDGKGAPVPSDGKGAPVPSDGKGAPVPSD 244
Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
P PS P PS P P+ P PS P P+ P PS P
Sbjct: 245 GKGAPVPSDGKGTPVPSDRKGAPVPNDGKGAPVPSDGKGAPVPNDGKGAPVPSDGKGAPV 304
Query: 212 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 271
P+ P PS+ P PS P PS P PS P PS P PS
Sbjct: 305 PNDGKGAPVPSNGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKG 364
Query: 272 LP 273
P
Sbjct: 365 TP 366
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 83/236 (35%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+P PS P PS P PS P PS P PS P PS P PS
Sbjct: 131 VPVPSDGKGTPVPSDGKGAPVPSDGKGAPVPSDGKGAPVPSDGKSTPVPSDGKSTPVPSD 190
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
+P PS +P PS P PS P PS P PS P PS P
Sbjct: 191 GKGVPVPSDGKGVPVPSDGKGTPVPSDGKGAPVPSDGKGAPVPSDGKGAPVPSDGKGAPV 250
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
PS P PS P P+ P PS P P+ P PS P P+
Sbjct: 251 PSDGKGTPVPSDRKGAPVPNDGKGAPVPSDGKGAPVPNDGKGAPVPSDGKGAPVPNDGKG 310
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
P PS+ P PS P PS P PS P PS P PS P
Sbjct: 311 APVPSNGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTPVPSDGKGTP 366
>gi|397497894|ref|XP_003819738.1| PREDICTED: collagen alpha-6(IV) chain isoform 3 [Pan paniscus]
Length = 1663
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 106/289 (36%), Gaps = 35/289 (12%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPS---SAPDLPGPSSA 80
P LPGP LPG LPG P G P P GPS P PGP +
Sbjct: 620 PGLPGPRG---LPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGS 676
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
LPG P G P PG P+LPG PGP LPG P LPG
Sbjct: 677 RGLPGTPGQPGSSGTKGEPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGK 727
Query: 141 SSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPS 195
LPG +P LPG A D+ G + L G + G S P L G
Sbjct: 728 DG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVH 784
Query: 196 SAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPS 249
P L GP +P PG P PG S + G S AP PG S P G
Sbjct: 785 GKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTR 844
Query: 250 SAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
PG LPG P L G +P PG + P L GP
Sbjct: 845 GKKGPPGSIVKKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKG 893
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 107/296 (36%), Gaps = 35/296 (11%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 657 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGTKGEPGSPGLVHLPELPGFPGPR 713
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 714 GEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 767
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
G S P L G P L GP +P PG P PG S + G S P
Sbjct: 768 HKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLP- 826
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 827 -----GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPG------LVGLKG 875
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+P PG + P L GP G P +PG P +PG +PG + +
Sbjct: 876 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGKM 928
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 68/176 (38%), Gaps = 28/176 (15%)
Query: 118 DLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
PG P LPG P LPG + P LPGP LPG LPG P
Sbjct: 592 GFPGEKGLPGLPGEKGHLGPPGLPG-NGLPGLPGPRG---LPGDKGKDGLPGQQGLPGSK 647
Query: 175 G---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
G P P GPS P PG PGP + LPG P G P PG
Sbjct: 648 GITLPCIIPGSYGPSGFPGTPG------FPGPKGSRGLPGTPGQPGSSGTKGEPGSPGLV 701
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 287
P+LPG PGP LPG P LPG LPG +P LPG A
Sbjct: 702 HLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGA 745
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 97/270 (35%), Gaps = 32/270 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----P 81
P PGP LPG P LPG LPG +P LPG A D+ G +
Sbjct: 707 PGFPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQ 760
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLP 138
L G + G S P L G P L GP +P PG P PG S +
Sbjct: 761 GLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIK 820
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G S P AP PG S P G PG LPG P PG
Sbjct: 821 GKSGLP------GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPG----- 869
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
L G +P PG + P L GP G P +PG P +PG +PG +
Sbjct: 870 -LVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGST 925
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
GPS+ PG PGP P
Sbjct: 926 GK---MGPSARAGTPGEKGDRGNPGPVGIP 952
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 77/219 (35%), Gaps = 13/219 (5%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
V+ +P P G P L G S PG G +P LPG S P L G +
Sbjct: 1009 VSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLKGDNG 1068
Query: 80 AP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
PGP P G G PG G S LPG P
Sbjct: 1069 QTVEISSSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFP 1128
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPG 193
+ G P LPG S GP +P L GP S +PGP+ LPGP PG
Sbjct: 1129 GVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGPSITGVPGPAG---LPGPKGEKGYPG 1185
Query: 194 PS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
AP PG G P L GP+ P PG S
Sbjct: 1186 IGIGAPGKPGLRGQ---KGDRGFPGLQGPAGLPGAPGIS 1221
>gi|432855207|ref|XP_004068125.1| PREDICTED: collagen alpha-1(XXIV) chain-like [Oryzias latipes]
Length = 1250
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 73/215 (33%), Gaps = 3/215 (1%)
Query: 36 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 95
P GP + G + G + +P GP+ + GP PGP +P L G
Sbjct: 785 PGKQGPKGENGVAGSAGKKGARGLNGSPGAEGPTGS---LGPRGLMGYPGPDGSPGLTGL 841
Query: 96 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 155
P G L GP PGP PGPS PG P LPG AP +
Sbjct: 842 PGLPGKQGRQGQRGLVGPEGPAGRPGPRGETGFPGPSGENGSPGQKGEPGLPGDRGAPGM 901
Query: 156 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 215
G A G + P L G P G PGP GP P GP A
Sbjct: 902 KGMEGAVGDQGKTGDPGLKGQPGEPGDSGMLGLQGFPGPKGPNGDLGPRGYPGPKGPVGA 961
Query: 216 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
+ GP + GP P GP GP
Sbjct: 962 LGIAGPVGPDGMIGPIGKPGPQGPKGNSGEMGPQG 996
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 73/215 (33%), Gaps = 3/215 (1%)
Query: 45 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 104
P GP + G + G + +P GP+ + GP PGP +P L G
Sbjct: 785 PGKQGPKGENGVAGSAGKKGARGLNGSPGAEGPTGSL---GPRGLMGYPGPDGSPGLTGL 841
Query: 105 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 164
P G L GP PGP PGPS PG P LPG AP +
Sbjct: 842 PGLPGKQGRQGQRGLVGPEGPAGRPGPRGETGFPGPSGENGSPGQKGEPGLPGDRGAPGM 901
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
G A G + P L G P G PGP GP P GP A
Sbjct: 902 KGMEGAVGDQGKTGDPGLKGQPGEPGDSGMLGLQGFPGPKGPNGDLGPRGYPGPKGPVGA 961
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
+ GP + GP P GP GP
Sbjct: 962 LGIAGPVGPDGMIGPIGKPGPQGPKGNSGEMGPQG 996
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 73/215 (33%), Gaps = 3/215 (1%)
Query: 63 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 122
P GP + G + G + +P GP+ + GP PGP +P L G
Sbjct: 785 PGKQGPKGENGVAGSAGKKGARGLNGSPGAEGPTGSL---GPRGLMGYPGPDGSPGLTGL 841
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
P G L GP PGP PGPS PG P LPG AP +
Sbjct: 842 PGLPGKQGRQGQRGLVGPEGPAGRPGPRGETGFPGPSGENGSPGQKGEPGLPGDRGAPGM 901
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
G A G + P L G P G PGP GP P GP A
Sbjct: 902 KGMEGAVGDQGKTGDPGLKGQPGEPGDSGMLGLQGFPGPKGPNGDLGPRGYPGPKGPVGA 961
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
+ GP + GP P GP GP
Sbjct: 962 LGIAGPVGPDGMIGPIGKPGPQGPKGNSGEMGPQG 996
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 57/168 (33%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
PGP +P L G P G L GP PGP PGPS PG
Sbjct: 829 YPGPDGSPGLTGLPGLPGKQGRQGQRGLVGPEGPAGRPGPRGETGFPGPSGENGSPGQKG 888
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P LPG AP + G A G + P L G P G PGP G
Sbjct: 889 EPGLPGDRGAPGMKGMEGAVGDQGKTGDPGLKGQPGEPGDSGMLGLQGFPGPKGPNGDLG 948
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
P P GP A + GP + GP P GP GP
Sbjct: 949 PRGYPGPKGPVGALGIAGPVGPDGMIGPIGKPGPQGPKGNSGEMGPQG 996
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 46/127 (36%), Gaps = 3/127 (2%)
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
P GP + G + G + +P GP+ + GP PGP +P L G
Sbjct: 785 PGKQGPKGENGVAGSAGKKGARGLNGSPGAEGPTGSL---GPRGLMGYPGPDGSPGLTGL 841
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
P G L GP PGP PGPS PG P LPG AP +
Sbjct: 842 PGLPGKQGRQGQRGLVGPEGPAGRPGPRGETGFPGPSGENGSPGQKGEPGLPGDRGAPGM 901
Query: 291 PGPSSTV 297
G V
Sbjct: 902 KGMEGAV 908
>gi|383850275|ref|XP_003700721.1| PREDICTED: collagen alpha-1(IV) chain-like [Megachile rotundata]
Length = 1939
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 92/234 (39%), Gaps = 18/234 (7%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP+ P +PG P +PG P +P P PG P PG P +PG P
Sbjct: 853 RPVHPGMPGTPGTPGIPGTPGTPGIPPRPGHPGKPGKPPHPGHPGIPGTPGIPGTPGTPG 912
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
P P +PG +P PG P PG S P PG P PG P PG +
Sbjct: 913 FPPQPGHPGIPG---SPGYPGYPGTPGTPGAPSQPSHPGTPGTPAYPG---HPGTPGVPT 966
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
P PG S P PG +PG P +PG P G P +PG P PG
Sbjct: 967 QPGYPGTSPQPGHPG------IPGTPGTPGIPGTPGTPPQAGHPGTPGIPGHPVYPGYPG 1020
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
P PG P +PG AP PG S P PG P PG P PG
Sbjct: 1021 APGTPPQPGFPGTPGIPG---APGHPGAPSQPGYPG---HPAYPGSPEGPGTPG 1068
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 72/186 (38%), Gaps = 18/186 (9%)
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P +PG P P P +PG +P PG P PG S P PG P PG
Sbjct: 901 TPGIPGTPGTPGFPPQPGHPGIPG---SPGYPGYPGTPGTPGAPSQPSHPGTPGTPAYPG 957
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
P PG + P PG S P PG +PG P +PG P G P
Sbjct: 958 ---HPGTPGVPTQPGYPGTSPQPGHPG------IPGTPGTPGIPGTPGTPPQAGHPGTPG 1008
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
+PG P PG P PG P +PG AP PG S P PG P PG
Sbjct: 1009 IPGHPVYPGYPGAPGTPPQPGFPGTPGIPG---APGHPGAPSQPGYPG---HPAYPGSPE 1062
Query: 269 APDLPG 274
P PG
Sbjct: 1063 GPGTPG 1068
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 83/221 (37%), Gaps = 9/221 (4%)
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
P +PG P +PG P +P P PG P PG P +PG P P
Sbjct: 857 PGMPGTPGTPGIPGTPGTPGIPPRPGHPGKPGKPPHPGHPGIPGTPGIPGTPGTPGFPPQ 916
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
P +PG +P PG P PG S P PG P PG P PG + P
Sbjct: 917 PGHPGIPG---SPGYPGYPGTPGTPGAPSQPSHPGTPGTPAYPG---HPGTPGVPTQPGY 970
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
PG S P PG P PG P P + P PG P PG P PG
Sbjct: 971 PGTSPQPGHPGIPGTPGTPGIPGTPGTPPQAGHPGTPGIPGHPVYPG---YPGAPGTPPQ 1027
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P PG P PG AP PG P PG P PG
Sbjct: 1028 PGFPGTPGIPGAPGHPGAPSQPGYPGHPAYPGSPEGPGTPG 1068
>gi|50502|emb|CAA29946.1| unnamed protein product [Mus musculus]
Length = 1154
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 109/298 (36%), Gaps = 32/298 (10%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 83
P L G S P LPG P +PG P S ++ G P PGP+ P LPG L
Sbjct: 851 PGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGTPGLPGEKGDHGL 910
Query: 84 PG---PSSAPDLPGPSSAPDLPGP---------SSAPDLPGPSSAPDLPGPSSAPDLPGP 131
PG P P G LPG S G GP+ G
Sbjct: 911 PGSSGPRGDPGFKGDKGDVGLPGMPGSMEHVDMGSMKGQKGDQGEKGQIGPTGDKGSRGD 970
Query: 132 SSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 182
P +PG + P PGP P L G +P LPGP + P PG P +
Sbjct: 971 PGTPGVPGKDGHAGHPGQPGPKGDPGLSGTPGSPGLPGPKGSVGGMGLPGSPGEKGVPGI 1030
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
PG P PG A G S P + PG L G +P G + P
Sbjct: 1031 PGSQGVPGSPGEKGAKGEKGQSGLPGIGIPGRPGDKGDQGLAGFPGSPGEKGEKGSAGTP 1090
Query: 238 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
G P PGP +P G +P LPG LPG P + G + P PGP+
Sbjct: 1091 G---MPGSPGPRGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGTPGPTG 1145
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 111/320 (34%), Gaps = 66/320 (20%)
Query: 34 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 93
+P PGP PG P +PG A PG P LPGP LPG P +P
Sbjct: 655 GSPGFPGPQGDRGFPGTPGRPGIPGEKGAVGQPG-IGFPGLPGPKGVDGLPGEIGRPGIP 713
Query: 94 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 153
G PG + P PGP PG LPG P LPG P G P
Sbjct: 714 G------RPGFNGLPGNPGPQGQKGEPGIG----LPGLKGQPGLPGIPGTPGEKGSIGGP 763
Query: 154 DLPGPSSAPDLPGPSSAPDLPGP--------------------------------SSAPD 181
+PG PG PGP S P
Sbjct: 764 GVPGEQGLTGPPGLQGIRGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGQGPPGSSGPPG 823
Query: 182 LPGPSSAPDLPGPSSAPDLPGPS------SAPDLPGPSSAPDLPGPSSAPDLPG-PSSAP 234
+ G P PG D+PGP P L G S P LPG P +PG P S
Sbjct: 824 IKGEKGFPGFPG----LDMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKG 879
Query: 235 DLP--GPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPD 289
++ G P PGP+ P LPG LP GP P G LPG
Sbjct: 880 EMGVMGTPGQPGSPGPAGTPGLPGEKGDHGLPGSSGPRGDPGFKGDKGDVGLPG------ 933
Query: 290 LPGPSSTV-LGSYLGEAGHQ 308
+PG V +GS G+ G Q
Sbjct: 934 MPGSMEHVDMGSMKGQKGDQ 953
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 75/206 (36%), Gaps = 27/206 (13%)
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 159
D+PGP G P L G S P LPG P +PG PG + G
Sbjct: 837 DMPGPKGDK---GSQGLPGLTGQSGLPGLPGQQGTPGVPG------FPGSKGEMGVMGTP 887
Query: 160 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
P PGP+ P LPG LPG S GP P G LPG +P
Sbjct: 888 GQPGSPGPAGTPGLPGEKGDHGLPGSS------GPRGDPGFKGDKGDVGLPG------MP 935
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPS 276
G D+ S G GP+ G P +PG + P PGP
Sbjct: 936 GSMEHVDM---GSMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGHAGHPGQPGPK 992
Query: 277 SAPDLPGPSSAPDLPGPSSTVLGSYL 302
P L G +P LPGP +V G L
Sbjct: 993 GDPGLSGTPGSPGLPGPKGSVGGMGL 1018
>gi|116256354|ref|NP_001837.2| collagen alpha-2(IV) chain preproprotein [Homo sapiens]
gi|143811377|sp|P08572.4|CO4A2_HUMAN RecName: Full=Collagen alpha-2(IV) chain; Contains: RecName:
Full=Canstatin; Flags: Precursor
gi|119629516|gb|EAX09111.1| collagen, type IV, alpha 2, isoform CRA_a [Homo sapiens]
gi|119629517|gb|EAX09112.1| collagen, type IV, alpha 2, isoform CRA_a [Homo sapiens]
Length = 1712
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 66/182 (36%), Gaps = 6/182 (3%)
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
PGP +PG LPG P G P +PG P LPGPS P L GP
Sbjct: 781 PGPRGDAGVPGQPGLKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP--- 837
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
P L G AP GP P +PG P G PGP L G G
Sbjct: 838 PGLHGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGE 897
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
P PG +PG P L G +P + G P L G P G + +
Sbjct: 898 QGHPGSPGFKGIDGMPG---TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGI 954
Query: 273 PG 274
PG
Sbjct: 955 PG 956
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 89/273 (32%), Gaps = 24/273 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPG P G P +PG P LPGPS P L GP P L G AP GP
Sbjct: 798 LPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLG 854
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P +PG P G PGP L G G P PG +PG
Sbjct: 855 LPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGEQGHPGSPGFKGIDGMPG 914
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------ 202
P L G +P + G P L G P G + +PG PG
Sbjct: 915 ---TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGIPGLKGLAGEPGFKGSRG 971
Query: 203 -----------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSS 250
D+ G G G P +PG S P LPG P
Sbjct: 972 DPGPPGPPPVILPGMKDIKGEKGDEGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGH 1031
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
+ G P +PG P + GP PG
Sbjct: 1032 IKGVKGDIGVPGIPGLPGFPGVAGPPGITGFPG 1064
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 75/223 (33%), Gaps = 22/223 (9%)
Query: 31 GPSSAPDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
G A LPGP LPG PGP +PG LP
Sbjct: 741 GSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLGAQ-PGPRGDAGVPGQPGLKGLP 799
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G P G P +PG P LPGPS P L GP P L G AP GP P
Sbjct: 800 GDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLP 856
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
+PG P G PGP L G G P PG +PG
Sbjct: 857 GIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGEQGHPGSPGFKGIDGMPG-- 914
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
P L G +P + G P L G P G + +PG
Sbjct: 915 -TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGIPG 956
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 81/249 (32%), Gaps = 24/249 (9%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P LPGPS P L GP P L G AP GP P +PG P G PG
Sbjct: 822 QPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDTGAPG 878
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P L G G P PG +PG P L G +P + G P
Sbjct: 879 PVGMKGLSGDRGDAGFTGEQGHPGSPGFKGIDGMPG---TPGLKGDRGSPGMDGFQGMPG 935
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----------------PSSAPDLPGPSSA 188
L G P G + +PG PG D+ G
Sbjct: 936 LKGRPGFPGSKGEAGFFGIPGLKGLAGEPGFKGSRGDPGPPGPPPVILPGMKDIKGEKGD 995
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPG 247
G G P +PG S P LPG P + G P +PG P + G
Sbjct: 996 EGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGHIKGVKGDIGVPGIPGLPGFPGVAG 1055
Query: 248 PSSAPDLPG 256
P PG
Sbjct: 1056 PPGITGFPG 1064
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 59/178 (33%), Gaps = 19/178 (10%)
Query: 130 GPSSAPDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
G A LPGP LPG PGP +PG LP
Sbjct: 741 GSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLGAQ-PGPRGDAGVPGQPGLKGLP 799
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G P G P +PG P LPGPS P L GP P L G AP GP P
Sbjct: 800 GDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLP 856
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG P G PGP L G G P PG +PG
Sbjct: 857 GIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGEQGHPGSPGFKGIDGMPG 914
>gi|440891574|gb|ELR45179.1| Collagen alpha-6(IV) chain, partial [Bos grunniens mutus]
Length = 1656
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 77/202 (38%), Gaps = 30/202 (14%)
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
A PG P LPG GP P PGP P G P PGP P
Sbjct: 558 GAQGFPGEKGLPGLPGEKGHTGPTGPPGIGLPGAPGPRGLPGDKGVDGLPGQPGPRGVPG 617
Query: 191 L------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
+ PGP LPG AP PGP A LPG P L G P PG P+
Sbjct: 618 ITLPCIIPGPYGPSGLPG---APGFPGPKGARGLPGAPGQPGLRGNKGDPGSPGLVHLPE 674
Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST---VLGSY 301
L G PGP LPG P LPG LPG +P LPGP +LG+
Sbjct: 675 LSG------FPGPHGEKGLPG---FPGLPGKDG---LPGKVGSPGLPGPKGAPGDILGAE 722
Query: 302 LGEAGHQKSPKGLEPKPAQISF 323
G G Q GL+ P F
Sbjct: 723 NGAPGEQ----GLQGLPGDRGF 740
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 91/246 (36%), Gaps = 40/246 (16%)
Query: 18 STVTERPLEPDLPGPSSAPDLPGPSSAPDLPG-----------PSSAPDLPGPSSAPDLP 66
ST + P E PGP PG + AP G A PG P LP
Sbjct: 516 STRSGMPGEQGDPGPQGL---PGETGAPGKDGIPGLPGLPGLLGDGAQGFPGEKGLPGLP 572
Query: 67 GPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD------LPGPSSAPD 118
G GP P PGP P G P PGP P +PGP
Sbjct: 573 GEKGHTGPTGPPGIGLPGAPGPRGLPGDKGVDGLPGQPGPRGVPGITLPCIIPGPYGPSG 632
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
LPG AP PGP A LPG P L G P PG P+L G PGP
Sbjct: 633 LPG---APGFPGPKGARGLPGAPGQPGLRGNKGDPGSPGLVHLPELSG------FPGPHG 683
Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLP 237
LPG P LPG LPG +P LPGP AP D+ G + PG LP
Sbjct: 684 EKGLPG---FPGLPGKDG---LPGKVGSPGLPGPKGAPGDILGAENG--APGEQGLQGLP 735
Query: 238 GPSSAP 243
G P
Sbjct: 736 GDRGFP 741
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 78/226 (34%), Gaps = 9/226 (3%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------ 83
PG + LPG P + G P G +PG A LPG
Sbjct: 985 PGSTGLRGLPGLKGYPGIAGFQGIPGESGSQGLSGIPGLPGASGLPGLKGDQGQTLGISG 1044
Query: 84 -PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
PGP P G GP PG G S LPG P + G
Sbjct: 1045 SPGPKGQPGESGFKGVKGKDGPVGDVGFPGNKGEDGKVGISGDVGLPGSLGLPGVAGMRG 1104
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
P LPG P GP P L G P LPG LPG PGPS +PG
Sbjct: 1105 NPGLPGSPGHPGATGPLGPPGLIGTKGFPGLPGLHGLNGLPGTKGTHGTPGPSIT-GVPG 1163
Query: 203 PSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
P+ P G +P + G P + GP + PG A LPG
Sbjct: 1164 PAGLPGPKGEKGSPGIGIGAPGKPGIRGPKGSQGFPGLQGAAGLPG 1209
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 68/193 (35%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG + LPG P + G +PG S + L S P LPG S
Sbjct: 975 IKGLSGRPGPPGSTGLRGLPGLKGYPGIAGFQG---IPGESGSQGL---SGIPGLPGASG 1028
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P L G PGP P G GP PG G S
Sbjct: 1029 LPGLKGDQGQTLGISGSPGPKGQPGESGFKGVKGKDGPVGDVGFPGNKGEDGKVGISGDV 1088
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
LPG P + G P LPG P GP P L G P LPG LPG
Sbjct: 1089 GLPGSLGLPGVAGMRGNPGLPGSPGHPGATGPLGPPGLIGTKGFPGLPGLHGLNGLPGTK 1148
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1149 GTHGTPGPSITGV 1161
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 123/473 (26%), Positives = 156/473 (32%), Gaps = 102/473 (21%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P + G P LPG P GP P L G P LPG LPG PGP
Sbjct: 1097 PGVAGMRGNPGLPGSPGHPGATGPLGPPGLIGTKGFPGLPGLHGLNGLPGTKGTHGTPGP 1156
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPG------ 139
S +PGP+ P G +P + G P + GP + PG A LPG
Sbjct: 1157 SIT-GVPGPAGLPGPKGEKGSPGIGIGAPGKPGIRGPKGSQGFPGLQGAAGLPGALGLSL 1215
Query: 140 PSSAPDLPGPSSAPDL------------------------PGPSSAPDLPGPSSAPDLPG 175
PS PG P L PG P +PGP G
Sbjct: 1216 PSVIEGQPGDPGRPGLDGERGRPGPPGPPGPPGPASDQGDPGDPGFPGIPGPQ------G 1269
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD------------LPGPSSAPDLPGPSS 223
P +PG S P G PG P + G + L GP
Sbjct: 1270 PKGDQGIPGFSGLPGELGLKGMRGEPGFMGTPGKVGPPGDPGLPGMKGKAGPRGLSGPRG 1329
Query: 224 AP----------------DLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
AP LPG P L PG L G P +PG A LP
Sbjct: 1330 APGHTPIAEAIQAPPGPMGLPGIDGIPGLMGDPGVQGPVGLQGSKGLPGIPGKDGASGLP 1389
Query: 265 GPSSA------PDLPGP---SSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQK---SPK 312
GP A P L GP AP PGP +PG S V + + + ++ P
Sbjct: 1390 GPPGALGDPGLPGLQGPPGFEGAPGKPGPFGRAGVPGQSLRVGYTLVKHSQSEQVPLCPS 1449
Query: 313 GLEPKPAQIS--FVLNIFANFHQTLRFLHFSCTSLVVTRATVVKLPLYILTVEDDTVILL 370
G+ S FV +Q L F SC T +P + +
Sbjct: 1450 GMSQLWVGYSLLFVEGQEKAHNQDLGFAG-SCLPRFST------MPFIYCNINE------ 1496
Query: 371 FIETFIQLPQQAYTTNSFA--PMDPSKDDTVILLFIKTC--IQLPQQAYTTNS 419
+ + + ++Y ++ A PM P T I +I C + P QA +S
Sbjct: 1497 -VCHYARRNDKSYWLSTTAPIPMMPV-GQTQIPQYISRCSVCEAPSQAIAVHS 1547
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 111/290 (38%), Gaps = 27/290 (9%)
Query: 15 YLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSA 71
Y PS + P P PGP A LPG P L G P PG P+L PGP
Sbjct: 628 YGPSGL---PGAPGFPGPKGARGLPGAPGQPGLRGNKGDPGSPGLVHLPELSGFPGPHGE 684
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 130
LPG P LPG LPG +P LPGP AP D+ G + PG LPG
Sbjct: 685 KGLPG---FPGLPGKDG---LPGKVGSPGLPGPKGAPGDILGAENG--APGEQGLQGLPG 736
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
PG S P L G L GP PG PGP L G P
Sbjct: 737 DRG---FPGDSGLPGLKGLLGKSGLLGPKGERGSPGIPGRVGQPGPPGPSGLFGIKGKPG 793
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
L GP P PG S P GP LP G P L G P G LPG
Sbjct: 794 LRGP---PGFPGISGHPGKKGPRGEIGLPASAGKRGLPGLKGLPGPPGPIGFLGNSGLPG 850
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+ P LPG G + P +PG P +PG S +PG + V
Sbjct: 851 ATGLPGLPGLKGEKGSVGLTGFPGIPG---LPGIPGASGLKGIPGSTGRV 897
>gi|168278128|dbj|BAG11042.1| collagen alpha-2(IV) chain precursor [synthetic construct]
Length = 1712
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 66/182 (36%), Gaps = 6/182 (3%)
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
PGP +PG LPG P G P +PG P LPGPS P L GP
Sbjct: 781 PGPRGDAGVPGQPGLKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP--- 837
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
P L G AP GP P +PG P G PGP L G G
Sbjct: 838 PGLHGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGE 897
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
P PG +PG P L G +P + G P L G P G + +
Sbjct: 898 QGHPGSPGFKGIDGMPG---TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGI 954
Query: 273 PG 274
PG
Sbjct: 955 PG 956
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 89/273 (32%), Gaps = 24/273 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPG P G P +PG P LPGPS P L GP P L G AP GP
Sbjct: 798 LPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLG 854
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P +PG P G PGP L G G P PG +PG
Sbjct: 855 LPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGEQGHPGSPGFKGIDGMPG 914
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------ 202
P L G +P + G P L G P G + +PG PG
Sbjct: 915 ---TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGIPGLKGLAGEPGFKGSRG 971
Query: 203 -----------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSS 250
D+ G G G P +PG S P LPG P
Sbjct: 972 DPGPPGPPPVILPGMKDIKGEKGDEGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGH 1031
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
+ G P +PG P + GP PG
Sbjct: 1032 IKGVKGDIGVPGIPGLPGFPGVAGPPGITGFPG 1064
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 75/223 (33%), Gaps = 22/223 (9%)
Query: 31 GPSSAPDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
G A LPGP LPG PGP +PG LP
Sbjct: 741 GSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLGAQ-PGPRGDAGVPGQPGLKGLP 799
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G P G P +PG P LPGPS P L GP P L G AP GP P
Sbjct: 800 GDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLP 856
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
+PG P G PGP L G G P PG +PG
Sbjct: 857 GIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGEQGHPGSPGFKGIDGMPG-- 914
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
P L G +P + G P L G P G + +PG
Sbjct: 915 -TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGIPG 956
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 81/249 (32%), Gaps = 24/249 (9%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P LPGPS P L GP P L G AP GP P +PG P G PG
Sbjct: 822 QPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDTGAPG 878
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P L G G P PG +PG P L G +P + G P
Sbjct: 879 PVGMKGLSGDRGDAGFTGEQGHPGSPGFKGIDGMPG---TPGLKGDRGSPGMDGFQGMPG 935
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----------------PSSAPDLPGPSSA 188
L G P G + +PG PG D+ G
Sbjct: 936 LKGRPGFPGSKGEAGFFGIPGLKGLAGEPGFKGSRGDPGPPGPPPVILPGMKDIKGEKGD 995
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPG 247
G G P +PG S P LPG P + G P +PG P + G
Sbjct: 996 EGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGHIKGVKGDIGVPGIPGLPGFPGVAG 1055
Query: 248 PSSAPDLPG 256
P PG
Sbjct: 1056 PPGITGFPG 1064
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 59/178 (33%), Gaps = 19/178 (10%)
Query: 130 GPSSAPDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
G A LPGP LPG PGP +PG LP
Sbjct: 741 GSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLGAQ-PGPRGDAGVPGQPGLKGLP 799
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G P G P +PG P LPGPS P L GP P L G AP GP P
Sbjct: 800 GDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLP 856
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG P G PGP L G G P PG +PG
Sbjct: 857 GIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGEQGHPGSPGFKGIDGMPG 914
>gi|13435918|gb|AAH04800.1| Col4a6 protein [Mus musculus]
Length = 546
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 105/316 (33%), Gaps = 45/316 (14%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP L GP P PG LPG PG +S +PGP+ P G P
Sbjct: 10 RPGPSGLIGPKGFPGAPGLHGLNGLPGTKGTHGTPG-ASITGVPGPAGLPGPKGERGVPG 68
Query: 83 L----PGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGP---- 131
+ PG + G +P L GP+ P PG PS PG P L G
Sbjct: 69 IVIGDPGKQGSKGQKGDQGSPGLQGPAGTPGAPGISLPSVIAGQPGDPGRPGLDGERGRP 128
Query: 132 -----------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
SS PG S P +PG G P G S L G P
Sbjct: 129 GPPGPPGPPGPSSDQGDPGDSGFPGIPGLQG---FKGNQGLPGFSGLSGELGLKGMRGEP 185
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----------PGPSSAPDLPGP 230
L G PG P + G + GP AP PGP P + G
Sbjct: 186 GLMGTPGKIGQPGDPGFPGMKGKAGPRGFSGPQGAPGHTPIAEAMQVPPGPLGLPGIDGI 245
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGP---SSAPDL 281
PG + L G P +PG LPGPS P L GP AP
Sbjct: 246 PGLIGDPGSQGSVGLQGSKGLPGIPGKDGPSGLPGPSGILGDPGLPGLQGPPGFEGAPGN 305
Query: 282 PGPSSAPDLPGPSSTV 297
GP P +PG V
Sbjct: 306 QGPIGQPGMPGHGVRV 321
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 97/279 (34%), Gaps = 30/279 (10%)
Query: 18 STVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG- 76
+++T P LPGP +PG PG + G +P L GP+ P PG
Sbjct: 46 ASITGVPGPAGLPGPKGERGVPGIVIGD--PGKQGSKGQKGDQGSPGLQGPAGTPGAPGI 103
Query: 77 --PSSAPDLPGPSSAPDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDL 119
PS PG P L G SS PG S P +PG
Sbjct: 104 SLPSVIAGQPGDPGRPGLDGERGRPGPPGPPGPPGPSSDQGDPGDSGFPGIPGLQG---F 160
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
G P G S L G P L G PG P + G + GP A
Sbjct: 161 KGNQGLPGFSGLSGELGLKGMRGEPGLMGTPGKIGQPGDPGFPGMKGKAGPRGFSGPQGA 220
Query: 180 PDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
P + A + PGP P + G PG + L G P +PG LPG
Sbjct: 221 PGHTPIAEAMQVPPGPLGLPGIDGIPGLIGDPGSQGSVGLQGSKGLPGIPGKDGPSGLPG 280
Query: 239 PSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
PS P LPG P G AP GP P +PG
Sbjct: 281 PSGILGDPGLPGLQGPPGFEG---APGNQGPIGQPGMPG 316
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 82/218 (37%), Gaps = 10/218 (4%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
LPS + +P +P PG PGP P PGPSS PG S P +PG
Sbjct: 105 LPSVIAGQPGDPGRPGLDGERGRPGPPGPPGPPGPSSDQGDPGDSGFPGIPGLQG---FK 161
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G P G S L G P L G PG P + G + GP AP
Sbjct: 162 GNQGLPGFSGLSGELGLKGMRGEPGLMGTPGKIGQPGDPGFPGMKGKAGPRGFSGPQGAP 221
Query: 136 DLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
+ A + PGP P + G PG + L G P +PG LPGP
Sbjct: 222 GHTPIAEAMQVPPGPLGLPGIDGIPGLIGDPGSQGSVGLQGSKGLPGIPGKDGPSGLPGP 281
Query: 195 SSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
S P LPG P G AP GP P +PG
Sbjct: 282 SGILGDPGLPGLQGPPGFEG---APGNQGPIGQPGMPG 316
>gi|426375955|ref|XP_004054779.1| PREDICTED: collagen alpha-2(IV) chain [Gorilla gorilla gorilla]
Length = 1712
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 90/273 (32%), Gaps = 24/273 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPG P G P +PG P LPGPS P L GP P L G AP GP
Sbjct: 798 LPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLG 854
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P +PG P G PGP L G G P PG +PG
Sbjct: 855 LPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGERGHPGSPGFKGIDGMPG 914
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------ 202
P L G +P + G P L G P G + +PG PG
Sbjct: 915 ---TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGIPGLKGLAGEPGFKGSRG 971
Query: 203 -----------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSS 250
D+ G G G P +PG S P LPG P
Sbjct: 972 DPGPPGPPPVILPGMKDIKGEKGDEGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGH 1031
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
+ G AP +PG P + GP PG
Sbjct: 1032 IKGVKGDIGAPGIPGLPGFPGVAGPPGITGFPG 1064
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 66/182 (36%), Gaps = 6/182 (3%)
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
PGP +PG LPG P G P +PG P LPGPS P L GP
Sbjct: 781 PGPRGDAGVPGQPGLKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP--- 837
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
P L G AP GP P +PG P G PGP L G G
Sbjct: 838 PGLHGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGE 897
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
P PG +PG P L G +P + G P L G P G + +
Sbjct: 898 RGHPGSPGFKGIDGMPG---TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGI 954
Query: 273 PG 274
PG
Sbjct: 955 PG 956
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 77/230 (33%), Gaps = 25/230 (10%)
Query: 27 PDLPGP---SSAPDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDLPGP 68
P GP A LPGP LPG PGP +PG
Sbjct: 734 PGFTGPRGSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLGAQ-PGPRGDAGVPGQ 792
Query: 69 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 128
LPG P G P +PG P LPGPS P L GP P L G AP
Sbjct: 793 PGLKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQ 849
Query: 129 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
GP P +PG P G PGP L G G P PG
Sbjct: 850 EGPLGLPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGERGHPGSPGFKGI 909
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
+PG P L G +P + G P L G P G + +PG
Sbjct: 910 DGMPG---TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGIPG 956
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 82/249 (32%), Gaps = 24/249 (9%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P LPGPS P L GP P L G AP GP P +PG P G PG
Sbjct: 822 QPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDTGAPG 878
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P L G G P PG +PG P L G +P + G P
Sbjct: 879 PVGMKGLSGDRGDAGFTGERGHPGSPGFKGIDGMPG---TPGLKGDRGSPGMDGFQGMPG 935
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----------------PSSAPDLPGPSSA 188
L G P G + +PG PG D+ G
Sbjct: 936 LKGRPGFPGSKGEAGFFGIPGLKGLAGEPGFKGSRGDPGPPGPPPVILPGMKDIKGEKGD 995
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPG 247
G G P +PG S P LPG P + G AP +PG P + G
Sbjct: 996 EGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGHIKGVKGDIGAPGIPGLPGFPGVAG 1055
Query: 248 PSSAPDLPG 256
P PG
Sbjct: 1056 PPGITGFPG 1064
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 59/178 (33%), Gaps = 19/178 (10%)
Query: 130 GPSSAPDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
G A LPGP LPG PGP +PG LP
Sbjct: 741 GSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLGAQ-PGPRGDAGVPGQPGLKGLP 799
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G P G P +PG P LPGPS P L GP P L G AP GP P
Sbjct: 800 GDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLP 856
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG P G PGP L G G P PG +PG
Sbjct: 857 GIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGERGHPGSPGFKGIDGMPG 914
>gi|405951824|gb|EKC19703.1| Collagen alpha-2(I) chain [Crassostrea gigas]
Length = 1321
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 78/208 (37%), Gaps = 12/208 (5%)
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
GP P GPS AP +PG P + G + GPS LPG + PGP P
Sbjct: 172 GPLGLPGRKGPSGAPGMPG---IPGMKGHRGLNGINGPSGEQGLPGEKGSMGPPGPPGPP 228
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
L G P G G + LPG P + G +P +PG +PGP
Sbjct: 229 GLQGQRGIPGERGRDGDRGSNGLNGVDGLPGQVGPPGVIGNQGSPGIPG------IPGPK 282
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
PGP + L G +PGP G P G + PGP+ P P
Sbjct: 283 GEAGAPGPKGSAGLQGQRGESGVPGPQGDEGALGMDGMPGASGEKGSSGDPGPAGVPGFP 342
Query: 247 GPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
G +PG +P L G A PG
Sbjct: 343 GTRGPQGIPG---SPGLQGSKGASGQPG 367
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 92/259 (35%), Gaps = 19/259 (7%)
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPS 123
G S AP GPS A +PG G P PGP+ PG S +P G
Sbjct: 706 GISGAPGNRGPSGADGIPGRKGERGDRGILGIPGQPGPTGRDGPQGFPGKSGSPGSQGTP 765
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
+ G P PGP +PG P G GP+ G S LP
Sbjct: 766 GQDGITGMRGEPGSPGPRGQEGMPGNPGQPGQKGARGEDGAEGPTGPVGPLGNSGEVGLP 825
Query: 184 G-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
G P + + GP+ A LPG + G GP P G +P PGP
Sbjct: 826 GDPGTRGERGPMGPAGAVGLPGEAGKSGSDGAPGKQGPQGPPGNPGSVGNVGSPGNPGPD 885
Query: 241 SAPDL------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLP 291
AP + GP+ GPS P GP GPS L GPS AP P
Sbjct: 886 GAPGITGRTGEKGPAGEMGQSGPSGLPGFAGPPGVTGATGPSGERGLRGEKGPSGAPGAP 945
Query: 292 G----PSSTVLGSYLGEAG 306
G P S + GE G
Sbjct: 946 GVRGPPGSNGIQGNSGEKG 964
Score = 38.1 bits (87), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 86/244 (35%), Gaps = 30/244 (12%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPS 87
G S AP GPS A +PG G P PGP+ PG S +P G
Sbjct: 706 GISGAPGNRGPSGADGIPGRKGERGDRGILGIPGQPGPTGRDGPQGFPGKSGSPGSQGTP 765
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
+ G P PGP +PG P G GP+ G S LP
Sbjct: 766 GQDGITGMRGEPGSPGPRGQEGMPGNPGQPGQKGARGEDGAEGPTGPVGPLGNSGEVGLP 825
Query: 148 G-PSSAPDLP--GPSSAPDLPG---PSSAPDLPGPS---------------SAPDLPGPS 186
G P + + GP+ A LPG S + PG +P PGP
Sbjct: 826 GDPGTRGERGPMGPAGAVGLPGEAGKSGSDGAPGKQGPQGPPGNPGSVGNVGSPGNPGPD 885
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAP 243
AP + G + GP+ GPS P GP GPS L GPS AP
Sbjct: 886 GAPGITGRTGEK---GPAGEMGQSGPSGLPGFAGPPGVTGATGPSGERGLRGEKGPSGAP 942
Query: 244 DLPG 247
PG
Sbjct: 943 GAPG 946
>gi|242007447|ref|XP_002424551.1| collagen alpha-1, IV, chain precursor, putative [Pediculus humanus
corporis]
gi|212507994|gb|EEB11813.1| collagen alpha-1, IV, chain precursor, putative [Pediculus humanus
corporis]
Length = 2525
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 97/289 (33%), Gaps = 26/289 (8%)
Query: 24 PLEPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
P P LPG P L G P PG AP L G P G + P + P
Sbjct: 1801 PGRPGLPGSKGEPGLTSEKGQKGEPGFPGLRGAPGLKGADGFPGQKGDAGLPGIGRPGPK 1860
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--------- 131
D G P LPG P G + P L G L G P LPG
Sbjct: 1861 GD-KGADGIPGLPGMDGLPGQKGDTGFPGLLGQKGDKGLAGAPGLPGLPGADGRPGEPGP 1919
Query: 132 ---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
S AP LPG PG L G PG P PG PGP
Sbjct: 1920 PGLSGAPGLPGLKGDRGFPGREGLNGLKGERGPGGAPGVVGFPGTPGEKGDRGPPGP--V 1977
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
D+ G P LPG A PG LPG PGP+ PG G
Sbjct: 1978 IDVKGDKGEPGLPGLPGAVGEPGNQGIAGLPGAKGERGSPGPAGLRGPPGFVGERGFKGE 2037
Query: 249 SSAPDLPGPSSAPDL--PGPSSAPDLPGPS---SAPDLPGPSSAPDLPG 292
+ AP +PG P L G P L G + A PG P LPG
Sbjct: 2038 AGAPGVPG---LPGLTVKGEKGLPGLMGKNGRDGARGAPGEKGEPGLPG 2083
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 98/295 (33%), Gaps = 31/295 (10%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--- 79
RP P PG +PG PGP LPGP P + G + G +
Sbjct: 1701 RPGAPGFPGAKGDRGVPGIDGPKGFPGPRG---LPGPQGRPGVDGFNGMKGDKGEAGFAG 1757
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
AP LPG PG P G + +P L GP GP P PG LPG
Sbjct: 1758 APGLPGMDGEKGFPG---LPGQKGDTGSPGLVGPPGPVGQVGPKGEPGRPG------LPG 1808
Query: 140 PSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
P L G P PG AP L G P G + P + P D G
Sbjct: 1809 SKGEPGLTSEKGQKGEPGFPGLRGAPGLKGADGFPGQKGDAGLPGIGRPGPKGD-KGADG 1867
Query: 197 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP------------SSAPD 244
P LPG P G + P L G L G P LPG S AP
Sbjct: 1868 IPGLPGMDGLPGQKGDTGFPGLLGQKGDKGLAGAPGLPGLPGADGRPGEPGPPGLSGAPG 1927
Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLG 299
LPG PG L G PG P PG PGP V G
Sbjct: 1928 LPGLKGDRGFPGREGLNGLKGERGPGGAPGVVGFPGTPGEKGDRGPPGPVIDVKG 1982
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 89/262 (33%), Gaps = 31/262 (11%)
Query: 49 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 108
G P L G AP PG +PG PGP LPGP P + G +
Sbjct: 1691 GDKGKPGLGGRPGAPGFPGAKGDRGVPGIDGPKGFPGPRG---LPGPQGRPGVDGFNGMK 1747
Query: 109 DLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 165
G + AP LPG PG P G + +P L GP GP P P
Sbjct: 1748 GDKGEAGFAGAPGLPGMDGEKGFPG---LPGQKGDTGSPGLVGPPGPVGQVGPKGEPGRP 1804
Query: 166 GPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 222
G LPG P L G P PG AP L G P G + P + P
Sbjct: 1805 G------LPGSKGEPGLTSEKGQKGEPGFPGLRGAPGLKGADGFPGQKGDAGLPGIGRPG 1858
Query: 223 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP------- 275
D G P LPG P G + P L G L G P LPG
Sbjct: 1859 PKGD-KGADGIPGLPGMDGLPGQKGDTGFPGLLGQKGDKGLAGAPGLPGLPGADGRPGEP 1917
Query: 276 -----SSAPDLPGPSSAPDLPG 292
S AP LPG PG
Sbjct: 1918 GPPGLSGAPGLPGLKGDRGFPG 1939
>gi|294952112|ref|XP_002787225.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239902000|gb|EER19021.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 321
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 152/307 (49%), Gaps = 26/307 (8%)
Query: 5 FDKHVFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 64
F+K V + A P T T + P PS+ + P PS+ P+ P S+ P+ P S+ P+
Sbjct: 3 FNKGVASTASNGPVTSTAS----NGPVPSTTSNGPVPSTTPNGPVTSTTPNGPVTSTTPN 58
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
P S+ + P S+ P+ P S+ + P S+ P+ P S+ + P S+ + P S+
Sbjct: 59 GPVTSTTSNSPVTSTTPNGPVTSTTSNSPVTSTTPNGPVTSTTSNSPVTSTTSNSPVTST 118
Query: 125 APDLP----------------GP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
P+ P GP S+ + P S+ P+ P S+ P+ P S+ P+ P
Sbjct: 119 TPNGPVTSTTSNSTVTSTNPHGPVTSTTSNSPVTSTTPNSPVTSTTPNGPVTSTTPNGPV 178
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 226
S+ + P S+ P+ P S+ P+ P S+ + P S+ P+ P S+ P+ P S+ P+
Sbjct: 179 TSTTSNSPVTSTTPNGPVTSTTPNGPVTSTTSNSPVTSTTPNSPVTSTTPNGPVTSTTPN 238
Query: 227 LPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
GP ++ GP S+ P+ P PS+ P+ P S+ + P S+ P+ P S+A + P
Sbjct: 239 --GPVTSTTSNGPVTSTTPNGPVPSTTPNGPVTSTTSNGPVTSTTPNGPVTSTASNSPVT 296
Query: 285 SSAPDLP 291
S+ P+ P
Sbjct: 297 STTPNGP 303
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 140/267 (52%)
Query: 33 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 92
S+A + P S+A + P PS+ + P PS+ P+ P S+ P+ P S+ P+ P S+ +
Sbjct: 9 STASNGPVTSTASNGPVPSTTSNGPVPSTTPNGPVTSTTPNGPVTSTTPNGPVTSTTSNS 68
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
P S+ P+ P S+ + P S+ P+ P S+ + P S+ + P S+ P+ P S+
Sbjct: 69 PVTSTTPNGPVTSTTSNSPVTSTTPNGPVTSTTSNSPVTSTTSNSPVTSTTPNGPVTSTT 128
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
+ S+ P P S+ + P S+ P+ P S+ P+ P S+ P+ P S+ + P
Sbjct: 129 SNSTVTSTNPHGPVTSTTSNSPVTSTTPNSPVTSTTPNGPVTSTTPNGPVTSTTSNSPVT 188
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
S+ P+ P S+ P+ P S+ + P S+ P+ P S+ P+ P S+ P+ P S+ +
Sbjct: 189 STTPNGPVTSTTPNGPVTSTTSNSPVTSTTPNSPVTSTTPNGPVTSTTPNGPVTSTTSNG 248
Query: 273 PGPSSAPDLPGPSSAPDLPGPSSTVLG 299
P S+ P+ P PS+ P+ P S+T G
Sbjct: 249 PVTSTTPNGPVPSTTPNGPVTSTTSNG 275
>gi|56407146|gb|AAV87892.1| C protein immunoglobulin-A-binding beta antigen [Streptococcus
agalactiae]
Length = 315
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 95/251 (37%), Gaps = 6/251 (2%)
Query: 5 FDKHVFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 64
F K T A + T P PD P P P APD P +P P P+
Sbjct: 27 FSKMNATVAKFQKGLETNTPETPDTPKIPELPQAPDTPQAPDTPHVPESPKAPEAPRVPE 86
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
P P +P AP+ P +P P P+ P AP +P PD P
Sbjct: 87 SPKTPDTPHVPESPKAPEAPRVPESPKTPDTPHVPESPKAPEAPRVPESPKTPDTPHVPE 146
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
+P P P+ P AP +P P+ P P +P AP+ P +P P
Sbjct: 147 SPKAPEAPRVPESPKTPEAPHVPESPKTPEAPKTPDTPHVPESPKAPEAPRVPESPKTPD 206
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
P+ P AP +P P+ P P+ P AP +P P PD+P PD
Sbjct: 207 TPHVPESPKAPEAPRVPESPKTPEAPH---VPESPKTPEAPKIPEPPKTPDVPK---LPD 260
Query: 245 LPGPSSAPDLP 255
+P AP LP
Sbjct: 261 VPKLPDAPKLP 271
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 97/248 (39%), Gaps = 11/248 (4%)
Query: 1 MIAPFDKHVFTEADYLPST--VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 58
+A F K + T P T + E P PD P P +P AP+ P +P P
Sbjct: 33 TVAKFQKGLETNTPETPDTPKIPELPQAPDTPQAPDTPHVPESPKAPEAPRVPESPKTPD 92
Query: 59 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 118
P+ P AP +P PD P P+ P AP +P PD P +P
Sbjct: 93 TPHVPESPKAPEAPRVPESPKTPDTPH---VPESPKAPEAPRVPESPKTPDTPHVPESPK 149
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
P P+ P AP +P P+ P P +P AP+ P +P P
Sbjct: 150 APEAPRVPESPKTPEAPHVPESPKTPEAPKTPDTPHVPESPKAPEAPRVPESPKTPDTPH 209
Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
P+ P AP +P P+ P P+ P AP +P P PD+P PD+P
Sbjct: 210 VPESPKAPEAPRVPESPKTPEAPH---VPESPKTPEAPKIPEPPKTPDVPK---LPDVPK 263
Query: 239 PSSAPDLP 246
AP LP
Sbjct: 264 LPDAPKLP 271
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 96/241 (39%), Gaps = 12/241 (4%)
Query: 42 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 101
++ P+ P P+LP APD P P +P AP+ P +P P P+
Sbjct: 43 TNTPETPDTPKIPELP---QAPDTPQAPDTPHVPESPKAPEAPRVPESPKTPDTPHVPES 99
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
P AP +P PD P P+ P AP +P PD P +P P
Sbjct: 100 PKAPEAPRVPESPKTPDTPH---VPESPKAPEAPRVPESPKTPDTPHVPESPKAPEAPRV 156
Query: 162 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 221
P+ P AP +P P+ P P +P AP+ P +P P P+ P
Sbjct: 157 PESPKTPEAPHVPESPKTPEAPKTPDTPHVPESPKAPEAPRVPESPKTPDTPHVPESPKA 216
Query: 222 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
AP +P P+ P P+ P AP +P P PD+P PD+P AP L
Sbjct: 217 PEAPRVPESPKTPEAPH---VPESPKTPEAPKIPEPPKTPDVPK---LPDVPKLPDAPKL 270
Query: 282 P 282
P
Sbjct: 271 P 271
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 96/241 (39%), Gaps = 12/241 (4%)
Query: 51 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 110
++ P+ P P+LP APD P P +P AP+ P +P P P+
Sbjct: 43 TNTPETPDTPKIPELP---QAPDTPQAPDTPHVPESPKAPEAPRVPESPKTPDTPHVPES 99
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
P AP +P PD P P+ P AP +P PD P +P P
Sbjct: 100 PKAPEAPRVPESPKTPDTPH---VPESPKAPEAPRVPESPKTPDTPHVPESPKAPEAPRV 156
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
P+ P AP +P P+ P P +P AP+ P +P P P+ P
Sbjct: 157 PESPKTPEAPHVPESPKTPEAPKTPDTPHVPESPKAPEAPRVPESPKTPDTPHVPESPKA 216
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
AP +P P+ P P+ P AP +P P PD+P PD+P AP L
Sbjct: 217 PEAPRVPESPKTPEAPH---VPESPKTPEAPKIPEPPKTPDVPK---LPDVPKLPDAPKL 270
Query: 291 P 291
P
Sbjct: 271 P 271
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 85/219 (38%), Gaps = 9/219 (4%)
Query: 78 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 137
++ P+ P P+LP APD P P +P AP+ P +P P P+
Sbjct: 43 TNTPETPDTPKIPELP---QAPDTPQAPDTPHVPESPKAPEAPRVPESPKTPDTPHVPES 99
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
P AP +P PD P P+ P AP +P PD P +P P
Sbjct: 100 PKAPEAPRVPESPKTPDTPH---VPESPKAPEAPRVPESPKTPDTPHVPESPKAPEAPRV 156
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
P+ P AP +P P+ P P +P AP+ P +P P P+ P
Sbjct: 157 PESPKTPEAPHVPESPKTPEAPKTPDTPHVPESPKAPEAPRVPESPKTPDTPHVPESPKA 216
Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
AP +P P+ P P+ P AP +P P T
Sbjct: 217 PEAPRVPESPKTPEAPH---VPESPKTPEAPKIPEPPKT 252
>gi|114650645|ref|XP_001136859.1| PREDICTED: collagen alpha-2(IV) chain isoform 2 [Pan troglodytes]
Length = 1711
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 90/273 (32%), Gaps = 24/273 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPG P G P +PG P LPGPS P L GP P L G AP GP
Sbjct: 797 LPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLG 853
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P +PG P G PGP L G G P PG +PG
Sbjct: 854 LPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGERGHPGSPGFKGIDGMPG 913
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------ 202
P L G +P + G P L G P G + +PG PG
Sbjct: 914 ---TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGIPGLKGLAGEPGFKGSRG 970
Query: 203 -----------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSS 250
D+ G G G P +PG S P LPG P
Sbjct: 971 DPGPPGPPPVILPGMKDIKGEKGDEGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGH 1030
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
+ G AP +PG P + GP PG
Sbjct: 1031 IKGVKGDIGAPGIPGLPGFPGVAGPPGITGFPG 1063
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 66/182 (36%), Gaps = 6/182 (3%)
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
PGP +PG LPG P G P +PG P LPGPS P L GP
Sbjct: 780 PGPRGDAGVPGQPGLKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP--- 836
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
P L G AP GP P +PG P G PGP L G G
Sbjct: 837 PGLHGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGE 896
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
P PG +PG P L G +P + G P L G P G + +
Sbjct: 897 RGHPGSPGFKGIDGMPG---TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGI 953
Query: 273 PG 274
PG
Sbjct: 954 PG 955
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 75/223 (33%), Gaps = 22/223 (9%)
Query: 31 GPSSAPDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
G A LPGP LPG PGP +PG LP
Sbjct: 740 GSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLGAQ-PGPRGDAGVPGQPGLKGLP 798
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G P G P +PG P LPGPS P L GP P L G AP GP P
Sbjct: 799 GDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLP 855
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
+PG P G PGP L G G P PG +PG
Sbjct: 856 GIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGERGHPGSPGFKGIDGMPG-- 913
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
P L G +P + G P L G P G + +PG
Sbjct: 914 -TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGIPG 955
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 82/249 (32%), Gaps = 24/249 (9%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P LPGPS P L GP P L G AP GP P +PG P G PG
Sbjct: 821 QPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDTGAPG 877
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P L G G P PG +PG P L G +P + G P
Sbjct: 878 PVGMKGLSGDRGDAGFTGERGHPGSPGFKGIDGMPG---TPGLKGDRGSPGMDGFQGMPG 934
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----------------PSSAPDLPGPSSA 188
L G P G + +PG PG D+ G
Sbjct: 935 LKGRPGFPGSKGEAGFFGIPGLKGLAGEPGFKGSRGDPGPPGPPPVILPGMKDIKGEKGD 994
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPG 247
G G P +PG S P LPG P + G AP +PG P + G
Sbjct: 995 EGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGHIKGVKGDIGAPGIPGLPGFPGVAG 1054
Query: 248 PSSAPDLPG 256
P PG
Sbjct: 1055 PPGITGFPG 1063
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 59/178 (33%), Gaps = 19/178 (10%)
Query: 130 GPSSAPDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
G A LPGP LPG PGP +PG LP
Sbjct: 740 GSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLGAQ-PGPRGDAGVPGQPGLKGLP 798
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G P G P +PG P LPGPS P L GP P L G AP GP P
Sbjct: 799 GDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLP 855
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG P G PGP L G G P PG +PG
Sbjct: 856 GIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGERGHPGSPGFKGIDGMPG 913
>gi|402588679|gb|EJW82612.1| collagen alpha-6(IV) chain [Wuchereria bancrofti]
Length = 471
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 54/137 (39%), Gaps = 12/137 (8%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EP LPG P G + P +PG P LPG P L G P PG LPG
Sbjct: 4 EPGLPGYPGVPGAKGDAGLPGIPGAKGEPGLPG---LPGLRGKDGFPGPPGIVGLAGLPG 60
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
L G AP LPG P L G P PGP P +PG P L G
Sbjct: 61 AKGDVGLSGAPGAPGLPG---LPGLKGEPGLPGFPGPKGEPGIPGKPGFPGLQG------ 111
Query: 146 LPGPSSAPDLPGPSSAP 162
+ G AP PG AP
Sbjct: 112 IKGECGAPGAPGREGAP 128
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 54 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 113
P LPG P G + P +PG P LPG P L G P PG LPG
Sbjct: 5 PGLPGYPGVPGAKGDAGLPGIPGAKGEPGLPG---LPGLRGKDGFPGPPGIVGLAGLPGA 61
Query: 114 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 173
L G AP LPG P L G P PGP P +PG P L G +
Sbjct: 62 KGDVGLSGAPGAPGLPG---LPGLKGEPGLPGFPGPKGEPGIPGKPGFPGLQG------I 112
Query: 174 PGPSSAPDLPGPSSAP 189
G AP PG AP
Sbjct: 113 KGECGAPGAPGREGAP 128
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 158
P LPG P G + P +PG P LPG P L G P PG LPG
Sbjct: 5 PGLPGYPGVPGAKGDAGLPGIPGAKGEPGLPG---LPGLRGKDGFPGPPGIVGLAGLPGA 61
Query: 159 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
L G AP LPG P L G P PGP P +PG P L G +
Sbjct: 62 KGDVGLSGAPGAPGLPG---LPGLKGEPGLPGFPGPKGEPGIPGKPGFPGLQG------I 112
Query: 219 PGPSSAPDLPGPSSAP 234
G AP PG AP
Sbjct: 113 KGECGAPGAPGREGAP 128
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 108 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 167
P LPG P G + P +PG P LPG P L G P PG LPG
Sbjct: 5 PGLPGYPGVPGAKGDAGLPGIPGAKGEPGLPG---LPGLRGKDGFPGPPGIVGLAGLPGA 61
Query: 168 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 227
L G AP LPG P L G P PGP P +PG P L G +
Sbjct: 62 KGDVGLSGAPGAPGLPG---LPGLKGEPGLPGFPGPKGEPGIPGKPGFPGLQG------I 112
Query: 228 PGPSSAPDLPGPSSAP 243
G AP PG AP
Sbjct: 113 KGECGAPGAPGREGAP 128
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
P LPG P G + P +PG P LPG P L G P PG LPG
Sbjct: 5 PGLPGYPGVPGAKGDAGLPGIPGAKGEPGLPG---LPGLRGKDGFPGPPGIVGLAGLPGA 61
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
L G AP LPG P L G P PGP P +PG P L G +
Sbjct: 62 KGDVGLSGAPGAPGLPG---LPGLKGEPGLPGFPGPKGEPGIPGKPGFPGLQG------I 112
Query: 237 PGPSSAPDLPGPSSAP 252
G AP PG AP
Sbjct: 113 KGECGAPGAPGREGAP 128
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
P LPG P G + P +PG P LPG P L G P PG LPG
Sbjct: 5 PGLPGYPGVPGAKGDAGLPGIPGAKGEPGLPG---LPGLRGKDGFPGPPGIVGLAGLPGA 61
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
L G AP LPG P L G P PGP P +PG P L G +
Sbjct: 62 KGDVGLSGAPGAPGLPG---LPGLKGEPGLPGFPGPKGEPGIPGKPGFPGLQG------I 112
Query: 246 PGPSSAPDLPGPSSAP 261
G AP PG AP
Sbjct: 113 KGECGAPGAPGREGAP 128
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
P LPG P G + P +PG P LPG P L G P PG LPG
Sbjct: 5 PGLPGYPGVPGAKGDAGLPGIPGAKGEPGLPG---LPGLRGKDGFPGPPGIVGLAGLPGA 61
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
L G AP LPG P L G P PGP P +PG P L G +
Sbjct: 62 KGDVGLSGAPGAPGLPG---LPGLKGEPGLPGFPGPKGEPGIPGKPGFPGLQG------I 112
Query: 255 PGPSSAPDLPGPSSAP 270
G AP PG AP
Sbjct: 113 KGECGAPGAPGREGAP 128
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
P LPG P G + P +PG P LPG P L G P PG LPG
Sbjct: 5 PGLPGYPGVPGAKGDAGLPGIPGAKGEPGLPG---LPGLRGKDGFPGPPGIVGLAGLPGA 61
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
L G AP LPG P L G P PGP P +PG P L G +
Sbjct: 62 KGDVGLSGAPGAPGLPG---LPGLKGEPGLPGFPGPKGEPGIPGKPGFPGLQG------I 112
Query: 264 PGPSSAPDLPGPSSAP 279
G AP PG AP
Sbjct: 113 KGECGAPGAPGREGAP 128
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
P LPG P G + P +PG P LPG P L G P PG LPG
Sbjct: 5 PGLPGYPGVPGAKGDAGLPGIPGAKGEPGLPG---LPGLRGKDGFPGPPGIVGLAGLPGA 61
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
L G AP LPG P L G P PGP P +PG P L G +
Sbjct: 62 KGDVGLSGAPGAPGLPG---LPGLKGEPGLPGFPGPKGEPGIPGKPGFPGLQG------I 112
Query: 273 PGPSSAPDLPGPSSAP 288
G AP PG AP
Sbjct: 113 KGECGAPGAPGREGAP 128
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 47/122 (38%), Gaps = 6/122 (4%)
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
P LPG P G + P +PG P LPG P L G P PG LPG
Sbjct: 5 PGLPGYPGVPGAKGDAGLPGIPGAKGEPGLPG---LPGLRGKDGFPGPPGIVGLAGLPGA 61
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
L G AP LPG P L G P PGP P +PG P L G
Sbjct: 62 KGDVGLSGAPGAPGLPG---LPGLKGEPGLPGFPGPKGEPGIPGKPGFPGLQGIKGECGA 118
Query: 291 PG 292
PG
Sbjct: 119 PG 120
>gi|426397032|ref|XP_004064732.1| PREDICTED: collagen alpha-6(IV) chain isoform 3 [Gorilla gorilla
gorilla]
Length = 1663
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 106/296 (35%), Gaps = 35/296 (11%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 72
Y PS P P PGP + LPG P PG S PG LP P
Sbjct: 657 GSYGPSGF---PGTPGFPGPKGSRGLPG---IPGQPGSSGTKGEPGSRGLVHLP---ELP 707
Query: 73 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PD 127
PGP LPG P LPG LPG +P LPG A D+ G +
Sbjct: 708 GFPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQG 761
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPG 184
L G + G S P L G P L GP +P PG P PG S + G
Sbjct: 762 LQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKG 821
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSS 241
S P AP PG S P G PG LPG P L G
Sbjct: 822 KSGLP------GAPGFPGTSGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGLVGLKG 875
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+P PG + P L GP G P +PG P +PG +PG + +
Sbjct: 876 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGKM 928
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 104/293 (35%), Gaps = 41/293 (13%)
Query: 29 LPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPD 82
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 628 LPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPG---IPG 684
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
PG S PG LP P PGP LPG P LPG LPG
Sbjct: 685 QPGSSGTKGEPGSRGLVHLP---ELPGFPGPRGEKGLPG---FPGLPGKDG---LPGMIG 735
Query: 143 APDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-- 195
+P LPG A D+ G + L G + G S P L G P L GP
Sbjct: 736 SPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGE 795
Query: 196 -SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDL---------PGPSSA 242
+P PG P PG S + G S AP PG S P PG
Sbjct: 796 RGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGKKGPPGSIVK 855
Query: 243 PDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P L G +P PG + P L GP G P +PG
Sbjct: 856 KGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG 908
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 96/270 (35%), Gaps = 32/270 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----P 81
P PGP LPG P LPG LPG +P LPG A D+ G +
Sbjct: 707 PGFPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQ 760
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLP 138
L G + G S P L G P L GP +P PG P PG S +
Sbjct: 761 GLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIK 820
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G S P AP PG S P G PG LPG P PG
Sbjct: 821 GKSGLP------GAPGFPGTSGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPG----- 869
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
L G +P PG + P L GP G P +PG P +PG +PG +
Sbjct: 870 -LVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGST 925
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
GPS PG PGP P
Sbjct: 926 GK---MGPSGRAGTPGEKGDRGNPGPVGIP 952
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 58/164 (35%), Gaps = 11/164 (6%)
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
G + PGP P + GP P L G P LPGP G P G
Sbjct: 255 GKKGSKGEPGPKGFPGISGPPGFPGLGTTGEKGEKGIPGLPGPRGPMGSEGVQGPPGQQG 314
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSA 260
PG + + G LPGP D+ G S P PG P L G
Sbjct: 315 KKGTLGFPGLNGFQGIEGQKGDIGLPGPDVFIDIDGAVISGNPGDPGVPGLPGLKGDEGI 374
Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG----PSSTVLGS 300
+ GPS P LP S P GP P L G P T +G+
Sbjct: 375 QGVRGPSGVPGLPALSGVPGALGPQGFPGLKGDQGNPGRTTIGA 418
>gi|159127726|gb|EDP52841.1| cell surface protein, putative [Aspergillus fumigatus A1163]
Length = 404
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 72/169 (42%), Gaps = 6/169 (3%)
Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
S P +PG S P P P +PG S P P P +PG P +PG SAP P
Sbjct: 204 SQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPG---QPSVPGQPSAPGQP 260
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
P +PG S P P P +PG SAP P P +PG S P P P
Sbjct: 261 SAPGQPSVPGQPSVPGQPSVPGQPSVPGQPSAPGQPSAPGQPSVPGQPSVPGQPSVPGQP 320
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
+PG P +PG S P P P +PG S P+ P P +PG
Sbjct: 321 SVPG---QPSVPGQPSVPGQPSAPEQPSVPGQPSVPEQPSAPEQPSVPG 366
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 77/178 (43%), Gaps = 15/178 (8%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
S P +PG S P P P +PG S P P P +PG P +PG SAP P
Sbjct: 204 SQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPGQPSVPG---QPSVPGQPSAPGQP 260
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
P +PG S P P P +PG SAP P P +PG S P P P
Sbjct: 261 SAPGQPSVPGQPSVPGQPSVPGQPSVPGQPSAPGQPSAPGQPSVPGQPSVPGQPSVPGQP 320
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
+PG P +PG P +PG SAP+ P +PG S P+ P P +PG
Sbjct: 321 SVPG---QPSVPG---QPSVPGQPSAPE------QPSVPGQPSVPEQPSAPEQPSVPG 366
>gi|395816324|ref|XP_003781654.1| PREDICTED: collagen alpha-1(X) chain [Otolemur garnettii]
Length = 678
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 75/211 (35%), Gaps = 13/211 (6%)
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G S AP + GP P G P L G G A GP P PG + P
Sbjct: 281 GFSGAPGIAGPPGEPGY-GKPGLPGLKGQRGPAGFTGAPGAKGEQGPVGHPGEPGLTGPP 339
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
GP + G P G S GP LPG PG P PG
Sbjct: 340 GNMGPQGPKGIQGNYGIPGAKGES------GPIGPFGLPGAKGERGFPGLDGKPGFPG-- 391
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
P L GP P L GP + GP P GP A +PG + GP P +P
Sbjct: 392 -EPGLSGPKGNPGLMGPKGDSGVRGPPGLPGSIGPEGAKGVPGKNGEV---GPRGEPGIP 447
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
G PG S P G P LPGP+S
Sbjct: 448 GARGLIGPPGTSGFPGAKGDPGNPGLPGPAS 478
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 65/180 (36%), Gaps = 12/180 (6%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
P+ T P GP P PG + P GP + G P G S G
Sbjct: 311 PAGFTGAPGAKGEQGPVGHPGEPGLTGPPGNMGPQGPKGIQGNYGIPGAKGES------G 364
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
P LPG PG P PG P L GP P L GP + GP P
Sbjct: 365 PIGPFGLPGAKGERGFPGLDGKPGFPG---EPGLSGPKGNPGLMGPKGDSGVRGPPGLPG 421
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
GP A +PG + GP P +PG PG S P G P LPGP+S
Sbjct: 422 SIGPEGAKGVPGKNGE---VGPRGEPGIPGARGLIGPPGTSGFPGAKGDPGNPGLPGPAS 478
>gi|341877801|gb|EGT33736.1| CBN-EMB-9 protein [Caenorhabditis brenneri]
Length = 1759
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 107/311 (34%), Gaps = 35/311 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPGPSSA 71
P PG + LPG P L G + P +PG P PG +
Sbjct: 1214 PGAPGENGDNGLPGRDGQPGLRGENGQPGMPGLQGRDGQPGPVGPPGDDGYPGAPGQDTY 1273
Query: 72 --PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
P G + P L G S P L G P G P +PG PG P +
Sbjct: 1274 GPPGQAGQNGYPGLDGLSGGPGLNGEPGTPGQYGMPGLPGVPGEPGVTGYPGERGLPGID 1333
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
G +PG AP PG P L G PG AP PG + P G P
Sbjct: 1334 GKRGHDGIPG---APGNPGLDGVPGLEGDCGDDGYPG---APGAPGSNGYPGERGLPGVP 1387
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-----SSAPD 244
G S PG P + GP PG LPG LPGP + P
Sbjct: 1388 GQQGRSGDNGFPGQPGQPGIKGPRGDDGFPGRDGLDGLPGRPGFQGLPGPLAMEIRNPPG 1447
Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG----PSSTVLGS 300
LPG + PG P LPG + P PG + P PG P PG P +
Sbjct: 1448 LPGDNG---YPGEKGYPGLPGDNGLPGPPGKAGYPGSPGQDGYPGQPGLPGTPGNGGDQG 1504
Query: 301 YLGEAGHQKSP 311
+ GE G P
Sbjct: 1505 FQGERGRTGHP 1515
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 96/271 (35%), Gaps = 23/271 (8%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P G + P L G S P L + P PG P LPG +PG PG
Sbjct: 1276 PGQAGQNGYPGLDGLSGGPGL---NGEPGTPGQYGMPGLPG------VPGEPGVTGYPGE 1326
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
P + G +PG AP PG P L G PG AP PG + P
Sbjct: 1327 RGLPGIDGKRGHDGIPG---APGNPGLDGVPGLEGDCGDDGYPG---APGAPGSNGYPGE 1380
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--- 203
G P G S PG P + GP PG LPG LPGP
Sbjct: 1381 RGLPGVPGQQGRSGDNGFPGQPGQPGIKGPRGDDGFPGRDGLDGLPGRPGFQGLPGPLAM 1440
Query: 204 --SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
+ P LPG + PG P LPG + P PG + P PG P PG P
Sbjct: 1441 EIRNPPGLPGDNG---YPGEKGYPGLPGDNGLPGPPGKAGYPGSPGQDGYPGQPGLPGTP 1497
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G G + P LPG P PG
Sbjct: 1498 GNGGDQGFQGERGRTGHPGLPGTPGYPGSPG 1528
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 92/265 (34%), Gaps = 14/265 (5%)
Query: 15 YLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 74
Y P + P L G S P L G P G P +PG PG P +
Sbjct: 1273 YGPPGQAGQNGYPGLDGLSGGPGLNGEPGTPGQYGMPGLPGVPGEPGVTGYPGERGLPGI 1332
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
G +PG AP PG P L G PG AP PG + P G
Sbjct: 1333 DGKRGHDGIPG---APGNPGLDGVPGLEGDCGDDGYPG---APGAPGSNGYPGERGLPGV 1386
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-----SSAP 189
P G S PG P + GP PG LPG LPGP + P
Sbjct: 1387 PGQQGRSGDNGFPGQPGQPGIKGPRGDDGFPGRDGLDGLPGRPGFQGLPGPLAMEIRNPP 1446
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
LPG + PG P LPG + P PG + P PG P PG P G
Sbjct: 1447 GLPGDNG---YPGEKGYPGLPGDNGLPGPPGKAGYPGSPGQDGYPGQPGLPGTPGNGGDQ 1503
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPG 274
G + P LPG P PG
Sbjct: 1504 GFQGERGRTGHPGLPGTPGYPGSPG 1528
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 105/306 (34%), Gaps = 36/306 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +PG + P L G P L G + P PG PG P PG + L
Sbjct: 1166 PGVPGENGLPGLRGQDGLPGLKGENGVDGQPGYPGSPGQLGTPGDVGYPGAPGENGDNGL 1225
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPGPSSA--PDLPGPSSAP 126
PG P L G + P +PG P PG + P G + P
Sbjct: 1226 PGRDGQPGLRGENGQPGMPGLQGRDGQPGPVGPPGDDGYPGAPGQDTYGPPGQAGQNGYP 1285
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
L G S P L G P G P +PG PG P + G +PG
Sbjct: 1286 GLDGLSGGPGLNGEPGTPGQYGMPGLPGVPGEPGVTGYPGERGLPGIDGKRGHDGIPG-- 1343
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
AP PG P L G PG AP PG + P G P G S P
Sbjct: 1344 -APGNPGLDGVPGLEGDCGDDGYPG---APGAPGSNGYPGERGLPGVPGQQGRSGDNGFP 1399
Query: 247 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-----SSAPDLPGPSSTVLGSY 301
G P + GP PG LPG LPGP + P LPG + Y
Sbjct: 1400 GQPGQPGIKGPRGDDGFPGRDGLDGLPGRPGFQGLPGPLAMEIRNPPGLPGDN-----GY 1454
Query: 302 LGEAGH 307
GE G+
Sbjct: 1455 PGEKGY 1460
>gi|403289633|ref|XP_003935951.1| PREDICTED: collagen alpha-6(IV) chain [Saimiri boliviensis
boliviensis]
Length = 1666
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 105/291 (36%), Gaps = 32/291 (10%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPG 85
P PGP LPG P LPG LPG +P LPG A D+ G + PG
Sbjct: 686 PGFPGPRGEKGLPG---FPGLPGKDG---LPGIIGSPGLPGSKGATGDIFGAENG--APG 737
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSS 142
LPG G S P L G P L GP +P PG P PG S
Sbjct: 738 KQGLQGLPGDKG---FIGDSGLPGLKGLHGKPGLLGPKGEQGSPGTPGQVGEPGTPGSSG 794
Query: 143 APDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
+ G S AP G S G LPG LPG P PG
Sbjct: 795 PYGIKGKSGLPGAPGFQGTSGHRGRKGTRGEKGLPGSVMKKGLPGLKGLPGNPG------ 848
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
L G +P PG + P LPG G P +PG P +PG +PG +
Sbjct: 849 LVGLKGSPGSPGITGLPALPGLKGEKGSVGSLGFPGIPG---FPGIPGVRGLKGIPGSTG 905
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKS 310
L S P PG PGP P P S + + G+ G Q S
Sbjct: 906 KIGL---SGRPGTPGEKGDRGNPGPVGIPSPRHPVSNLW--FKGDKGSQGS 951
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 108/292 (36%), Gaps = 48/292 (16%)
Query: 47 LPGPSSAPDLPGPSSAPDLPG--PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG- 103
PG P LPG LPG P LPGP LPG LPG P G
Sbjct: 572 FPGEKGIPGLPGEKGQRGLPGLPGIGLPGLPGPRG---LPGDKGKDGLPGQQGTPGSKGI 628
Query: 104 --PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
P P GPS P PG PGP + LPG P G PG
Sbjct: 629 TLPCIFPGSYGPSGFPGTPG------FPGPKGSRGLPGTPGPPGSRGNKGERGSPGLVHL 682
Query: 162 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPG 220
P+LPG PGP LPG P LPG LPG +P LPG A D+ G
Sbjct: 683 PELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGIIGSPGLPGSKGATGDIFG 730
Query: 221 PSSAPDLPGPSSAPDLP------GPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPD 271
+ PG LP G S P L G P L GP +P PG P
Sbjct: 731 AENG--APGKQGLQGLPGDKGFIGDSGLPGLKGLHGKPGLLGPKGEQGSPGTPGQVGEPG 788
Query: 272 LPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGH--QKSPKGLEPKPAQI 321
PG S + G S P PG + G +GH +K +G + P +
Sbjct: 789 TPGSSGPYGIKGKSGLPGAPG--------FQGTSGHRGRKGTRGEKGLPGSV 832
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 113/351 (32%), Gaps = 75/351 (21%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
LP +V ++ L P L G P L G +P PG + P LPG G P +P
Sbjct: 828 LPGSVMKKGL-PGLKGLPGNPGLVGLKGSPGSPGITGLPALPGLKGEKGSVGSLGFPGIP 886
Query: 76 GPSSAPDLPGPSSAPDLPGP------SSAPDLPGPSSAPDLPGPSSAP------------ 117
G P +PG +PG S P PG PGP P
Sbjct: 887 G---FPGIPGVRGLKGIPGSTGKIGLSGRPGTPGEKGDRGNPGPVGIPSPRHPVSNLWFK 943
Query: 118 ------------DLPGPSS-------------------APDLPGPSSAPDLPGPSSAPDL 146
PGP + G S P PG + L
Sbjct: 944 GDKGSQGSAGSDGFPGPRGDKGEAGRPGPPGLPGVPGLPGTIKGVSGKPGPPGFTGIQGL 1003
Query: 147 PGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-------PSSAPDLPG 193
PG + P +PG S + + G +P LPG S P L G S +P L G
Sbjct: 1004 PGLKGSSGITGFPGMPGESGSQGIRG---SPGLPGASGLPGLKGDNGQTLEISGSPGLKG 1060
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------PSSAPDLPG 247
P G L G P G +PG P PG P LPG
Sbjct: 1061 PPGESGFKGAKGRGGLTGSIGIPGNKGKDGEVGVPGDVGLPGAPGFLGTIGIRGEPGLPG 1120
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVL 298
S GP P L GP P PG LPG PGPS T +
Sbjct: 1121 SSGHEGAIGPPGLPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTPGPSITGV 1171
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 61/176 (34%), Gaps = 14/176 (7%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------PSSA 80
P L GP G L G P G +PG P PG
Sbjct: 1056 PGLKGPPGESGFKGAKGRGGLTGSIGIPGNKGKDGEVGVPGDVGLPGAPGFLGTIGIRGE 1115
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
P LPG S GP P L GP P PG LPG PGPS +PGP
Sbjct: 1116 PGLPGSSGHEGAIGPPGLPGLIGPKGFPGFPGLHGLNGLPGTKGTHGTPGPSIT-GVPGP 1174
Query: 141 SSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
+ LPGP PG AP PG G P L GP+ P PG S
Sbjct: 1175 AG---LPGPKGEKGNPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAGLPGAPGIS 1224
>gi|397524286|ref|XP_003832131.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-2(IV) chain [Pan
paniscus]
Length = 1711
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 90/273 (32%), Gaps = 24/273 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPG P G P +PG P LPGPS P L GP P L G AP GP
Sbjct: 797 LPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLG 853
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P +PG P G PGP L G G P PG +PG
Sbjct: 854 LPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGERGHPGSPGFKGIDGMPG 913
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------ 202
P L G +P + G P L G P G + +PG PG
Sbjct: 914 ---TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGIPGLKGLAGEPGFKGSRG 970
Query: 203 -----------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSS 250
D+ G G G P +PG S P LPG P
Sbjct: 971 DPGPPGPPPVILPGMKDIKGEKGDEGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGH 1030
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
+ G AP +PG P + GP PG
Sbjct: 1031 IKGVKGDIGAPGIPGLPGFPGVAGPPGITGFPG 1063
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 66/182 (36%), Gaps = 6/182 (3%)
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
PGP +PG LPG P G P +PG P LPGPS P L GP
Sbjct: 780 PGPRGDAGVPGQPGLKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP--- 836
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
P L G AP GP P +PG P G PGP L G G
Sbjct: 837 PGLHGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGE 896
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
P PG +PG P L G +P + G P L G P G + +
Sbjct: 897 RGHPGSPGFKGIDGMPG---TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGI 953
Query: 273 PG 274
PG
Sbjct: 954 PG 955
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 75/223 (33%), Gaps = 22/223 (9%)
Query: 31 GPSSAPDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
G A LPGP LPG PGP +PG LP
Sbjct: 740 GSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLGAQ-PGPRGDAGVPGQPGLKGLP 798
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G P G P +PG P LPGPS P L GP P L G AP GP P
Sbjct: 799 GDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLP 855
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
+PG P G PGP L G G P PG +PG
Sbjct: 856 GIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGERGHPGSPGFKGIDGMPG-- 913
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
P L G +P + G P L G P G + +PG
Sbjct: 914 -TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGIPG 955
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 82/249 (32%), Gaps = 24/249 (9%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P LPGPS P L GP P L G AP GP P +PG P G PG
Sbjct: 821 QPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDTGAPG 877
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P L G G P PG +PG P L G +P + G P
Sbjct: 878 PVGMKGLSGDRGDAGFTGERGHPGSPGFKGIDGMPG---TPGLKGDRGSPGMDGFQGMPG 934
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----------------PSSAPDLPGPSSA 188
L G P G + +PG PG D+ G
Sbjct: 935 LKGRPGFPGSKGEAGFFGIPGLKGLAGEPGFKGSRGDPGPPGPPPVILPGMKDIKGEKGD 994
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPG 247
G G P +PG S P LPG P + G AP +PG P + G
Sbjct: 995 EGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGHIKGVKGDIGAPGIPGLPGFPGVAG 1054
Query: 248 PSSAPDLPG 256
P PG
Sbjct: 1055 PPGITGFPG 1063
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 59/178 (33%), Gaps = 19/178 (10%)
Query: 130 GPSSAPDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
G A LPGP LPG PGP +PG LP
Sbjct: 740 GSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLGAQ-PGPRGDAGVPGQPGLKGLP 798
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G P G P +PG P LPGPS P L GP P L G AP GP P
Sbjct: 799 GDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLP 855
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG P G PGP L G G P PG +PG
Sbjct: 856 GIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGERGHPGSPGFKGIDGMPG 913
>gi|410300676|gb|JAA28938.1| collagen, type IV, alpha 2 [Pan troglodytes]
gi|410338669|gb|JAA38281.1| collagen, type IV, alpha 2 [Pan troglodytes]
Length = 1711
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 90/273 (32%), Gaps = 24/273 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPG P G P +PG P LPGPS P L GP P L G AP GP
Sbjct: 797 LPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLG 853
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P +PG P G PGP L G G P PG +PG
Sbjct: 854 LPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGERGHPGSPGFKGIDGMPG 913
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------ 202
P L G +P + G P L G P G + +PG PG
Sbjct: 914 ---TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGIPGLKGLAGEPGFKGSRG 970
Query: 203 -----------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSS 250
D+ G G G P +PG S P LPG P
Sbjct: 971 DPGPPGPPPVILPGMKDIKGEKGDEGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGH 1030
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
+ G AP +PG P + GP PG
Sbjct: 1031 IKGVKGDIGAPGIPGLPGFPGVAGPPGITGFPG 1063
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 66/182 (36%), Gaps = 6/182 (3%)
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
PGP +PG LPG P G P +PG P LPGPS P L GP
Sbjct: 780 PGPRGDAGVPGQPGLKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP--- 836
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
P L G AP GP P +PG P G PGP L G G
Sbjct: 837 PGLHGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGE 896
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
P PG +PG P L G +P + G P L G P G + +
Sbjct: 897 RGHPGSPGFKGIDGMPG---TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGI 953
Query: 273 PG 274
PG
Sbjct: 954 PG 955
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 75/223 (33%), Gaps = 22/223 (9%)
Query: 31 GPSSAPDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
G A LPGP LPG PGP +PG LP
Sbjct: 740 GSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLGAQ-PGPRGDAGVPGQPGLKGLP 798
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G P G P +PG P LPGPS P L GP P L G AP GP P
Sbjct: 799 GDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLP 855
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
+PG P G PGP L G G P PG +PG
Sbjct: 856 GIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGERGHPGSPGFKGIDGMPG-- 913
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
P L G +P + G P L G P G + +PG
Sbjct: 914 -TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGIPG 955
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 82/249 (32%), Gaps = 24/249 (9%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P LPGPS P L GP P L G AP GP P +PG P G PG
Sbjct: 821 QPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDTGAPG 877
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P L G G P PG +PG P L G +P + G P
Sbjct: 878 PVGMKGLSGDRGDAGFTGERGHPGSPGFKGIDGMPG---TPGLKGDRGSPGMDGFQGMPG 934
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----------------PSSAPDLPGPSSA 188
L G P G + +PG PG D+ G
Sbjct: 935 LKGRPGFPGSKGEAGFFGIPGLKGLAGEPGFKGSRGDPGPPGPPPVILPGMKDIKGEKGD 994
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPG 247
G G P +PG S P LPG P + G AP +PG P + G
Sbjct: 995 EGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGHIKGVKGDIGAPGIPGLPGFPGVAG 1054
Query: 248 PSSAPDLPG 256
P PG
Sbjct: 1055 PPGITGFPG 1063
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 59/178 (33%), Gaps = 19/178 (10%)
Query: 130 GPSSAPDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
G A LPGP LPG PGP +PG LP
Sbjct: 740 GSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLGAQ-PGPRGDAGVPGQPGLKGLP 798
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G P G P +PG P LPGPS P L GP P L G AP GP P
Sbjct: 799 GDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLP 855
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG P G PGP L G G P PG +PG
Sbjct: 856 GIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGERGHPGSPGFKGIDGMPG 913
>gi|426397034|ref|XP_004064733.1| PREDICTED: collagen alpha-6(IV) chain isoform 4 [Gorilla gorilla
gorilla]
Length = 1630
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 106/296 (35%), Gaps = 35/296 (11%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 72
Y PS P P PGP + LPG P PG S PG LP P
Sbjct: 657 GSYGPSGF---PGTPGFPGPKGSRGLPG---IPGQPGSSGTKGEPGSRGLVHLP---ELP 707
Query: 73 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PD 127
PGP LPG P LPG LPG +P LPG A D+ G +
Sbjct: 708 GFPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQG 761
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPG 184
L G + G S P L G P L GP +P PG P PG S + G
Sbjct: 762 LQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKG 821
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSS 241
S P AP PG S P G PG LPG P L G
Sbjct: 822 KSGLP------GAPGFPGTSGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGLVGLKG 875
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+P PG + P L GP G P +PG P +PG +PG + +
Sbjct: 876 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGKM 928
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 104/293 (35%), Gaps = 41/293 (13%)
Query: 29 LPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPD 82
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 628 LPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPG---IPG 684
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
PG S PG LP P PGP LPG P LPG LPG
Sbjct: 685 QPGSSGTKGEPGSRGLVHLP---ELPGFPGPRGEKGLPG---FPGLPGKDG---LPGMIG 735
Query: 143 APDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-- 195
+P LPG A D+ G + L G + G S P L G P L GP
Sbjct: 736 SPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGE 795
Query: 196 -SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDL---------PGPSSA 242
+P PG P PG S + G S AP PG S P PG
Sbjct: 796 RGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGTSGHPGKKGTRGKKGPPGSIVK 855
Query: 243 PDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P L G +P PG + P L GP G P +PG
Sbjct: 856 KGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG 908
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 96/270 (35%), Gaps = 32/270 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----P 81
P PGP LPG P LPG LPG +P LPG A D+ G +
Sbjct: 707 PGFPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQ 760
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLP 138
L G + G S P L G P L GP +P PG P PG S +
Sbjct: 761 GLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIK 820
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G S P AP PG S P G PG LPG P PG
Sbjct: 821 GKSGLP------GAPGFPGTSGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPG----- 869
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
L G +P PG + P L GP G P +PG P +PG +PG +
Sbjct: 870 -LVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGST 925
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
GPS PG PGP P
Sbjct: 926 GK---MGPSGRAGTPGEKGDRGNPGPVGIP 952
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 76/219 (34%), Gaps = 13/219 (5%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
V+ P P G P L G S PG G +P LPG S P L G +
Sbjct: 1009 VSGNPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLKGDNG 1068
Query: 80 AP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
PGP P G G PG G S LPG P
Sbjct: 1069 QTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFP 1128
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPG 193
+ G P LPG S GP +P L GP S +PGP+ LPGP PG
Sbjct: 1129 GVAGMKGEPGLPGSSGHQGAIGPLGSPGLIGPKGPSITGVPGPAG---LPGPKGEKGYPG 1185
Query: 194 PS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
AP PG G P L GP+ P PG S
Sbjct: 1186 IGIGAPGKPGLRGQ---KGDRGFPGLQGPAGLPGAPGIS 1221
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 73/212 (34%), Gaps = 13/212 (6%)
Query: 45 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----D 100
P G P L G S PG G +P LPG S P L G +
Sbjct: 1016 PGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLKGDNGQTVEISG 1075
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
PGP P G G PG G S LPG P + G
Sbjct: 1076 SPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFPGVAGMKG 1135
Query: 161 APDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPD 217
P LPG S GP +P L GP S +PGP+ LPGP PG AP
Sbjct: 1136 EPGLPGSSGHQGAIGPLGSPGLIGPKGPSITGVPGPAG---LPGPKGEKGYPGIGIGAPG 1192
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
PG G P L GP+ P PG S
Sbjct: 1193 KPGLRGQ---KGDRGFPGLQGPAGLPGAPGIS 1221
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 58/164 (35%), Gaps = 11/164 (6%)
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
G + PGP P + GP P L G P LPGP G P G
Sbjct: 255 GKKGSKGEPGPKGFPGISGPPGFPGLGTTGEKGEKGIPGLPGPRGPMGSEGVQGPPGQQG 314
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSA 260
PG + + G LPGP D+ G S P PG P L G
Sbjct: 315 KKGTLGFPGLNGFQGIEGQKGDIGLPGPDVFIDIDGAVISGNPGDPGVPGLPGLKGDEGI 374
Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG----PSSTVLGS 300
+ GPS P LP S P GP P L G P T +G+
Sbjct: 375 QGVRGPSGVPGLPALSGVPGALGPQGFPGLKGDQGNPGRTTIGA 418
>gi|219521281|gb|AAI44670.1| COL4A6 protein [Homo sapiens]
Length = 1666
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 107/296 (36%), Gaps = 35/296 (11%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 660 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPR 716
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 717 GEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 770
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
G S P L G P L GP +P PG P PG S + G S P
Sbjct: 771 HKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLP- 829
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 830 -----GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPG------LVGLKG 878
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+P PG + P L GP G P +PG P +PG +PG + +
Sbjct: 879 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGKM 931
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 105/293 (35%), Gaps = 41/293 (13%)
Query: 29 LPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPD 82
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 631 LPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQPG 690
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 691 SSGSKGEPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMIG 738
Query: 143 APDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-- 195
+P LPG A D+ G + L G + G S P L G P L GP
Sbjct: 739 SPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGE 798
Query: 196 -SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDL---------PGPSSA 242
+P PG P PG S + G S AP PG S P PG
Sbjct: 799 RGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSIVK 858
Query: 243 PDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P L G +P PG + P L GP G P +PG
Sbjct: 859 KGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG 911
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 98/277 (35%), Gaps = 32/277 (11%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPS 78
+ P P PGP LPG P LPG LPG +P LPG A D+ G
Sbjct: 703 LVHLPELPGFPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAE 756
Query: 79 SA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGP 131
+ L G + G S P L G P L GP +P PG P PG
Sbjct: 757 NGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGS 816
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
S + G S P AP PG S P G PG LPG P
Sbjct: 817 SGPYGIKGKSGLP------GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGN 870
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
PG L G +P PG + P L GP G P +PG P +PG
Sbjct: 871 PG------LVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGL 921
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
+PG + GPS PG PGP P
Sbjct: 922 KGIPGSTGK---MGPSGRAGTPGEKGDRGNPGPVGIP 955
>gi|392355373|ref|XP_001053056.3| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(X) chain [Rattus
norvegicus]
Length = 618
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 70/182 (38%), Gaps = 16/182 (8%)
Query: 21 TERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
T P P +PG P AP + GP AP G P L G LPG A
Sbjct: 266 TGSPGRPGIPGEKGHP------GAPGIAGPPGAPGF-GKQGLPGLRGQRGPAGLPGAPGA 318
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
GP+ P PG + +P GP +PG +PG L GP+ P G
Sbjct: 319 KGEQGPAGHPGEPGLTGSPGNMGPQGPKGIPGNHG---IPGTKGETGLVGPAGPPGARGA 375
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
P L G + P PG L GP P LPGP P + G L GP+ +
Sbjct: 376 RGPPGLDGKTGYPGDPG------LNGPKGNPGLPGPKGDPGVGGAPGLRGLVGPTGPKGV 429
Query: 201 PG 202
PG
Sbjct: 430 PG 431
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 72/182 (39%), Gaps = 13/182 (7%)
Query: 39 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 98
PG + +P PG P G AP + GP AP G P L G LPG A
Sbjct: 263 PGATGSPGRPG---IPGEKGHPGAPGIAGPPGAPGF-GKQGLPGLRGQRGPAGLPGAPGA 318
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 158
GP+ P PG + +P GP +PG +PG L GP+ P G
Sbjct: 319 KGEQGPAGHPGEPGLTGSPGNMGPQGPKGIPGNHG---IPGTKGETGLVGPAGPPGARGA 375
Query: 159 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
P L G + P PG L GP P LPGP P + G L GP+ +
Sbjct: 376 RGPPGLDGKTGYPGDPG------LNGPKGNPGLPGPKGDPGVGGAPGLRGLVGPTGPKGV 429
Query: 219 PG 220
PG
Sbjct: 430 PG 431
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 76/191 (39%), Gaps = 22/191 (11%)
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
PG + +P PG P G AP + GP AP G P L G LPG A
Sbjct: 263 PGATGSPGRPG---IPGEKGHPGAPGIAGPPGAPGF-GKQGLPGLRGQRGPAGLPGAPGA 318
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
GP+ P PG + +P GP +PG +PG L GP+ P G
Sbjct: 319 KGEQGPAGHPGEPGLTGSPGNMGPQGPKGIPGNHG---IPGTKGETGLVGPAGPPGARGA 375
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
P L G + P PG L GP P LPGP P + G AP L G L
Sbjct: 376 RGPPGLDGKTGYPGDPG------LNGPKGNPGLPGPKGDPGVGG---APGLRG------L 420
Query: 255 PGPSSAPDLPG 265
GP+ +PG
Sbjct: 421 VGPTGPKGVPG 431
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 95/292 (32%), Gaps = 54/292 (18%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS------------ 70
+P + L G + PG AP PG + G + P PG
Sbjct: 154 KPGQQGLTGAPGSRGFPGEKGAPGAPGVNGQKGETGYGT-PGRPGERGLPGPQGPVGPPG 212
Query: 71 --APDLPGPSSAPDLPG--------------------------PSSAPDLPGPSSAPDLP 102
G + P PG PG + +P P
Sbjct: 213 SPGVGRRGENGFPGQPGIKGDRGFPGEAGPPGPPGPQGPPGKQGREGIGKPGATGSPGRP 272
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
G P G AP + GP AP G P L G LPG A GP+ P
Sbjct: 273 G---IPGEKGHPGAPGIAGPPGAPGF-GKQGLPGLRGQRGPAGLPGAPGAKGEQGPAGHP 328
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 222
PG + +P GP +PG +PG L GP+ P G P L G +
Sbjct: 329 GEPGLTGSPGNMGPQGPKGIPGNHG---IPGTKGETGLVGPAGPPGARGARGPPGLDGKT 385
Query: 223 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
P PG L GP P LPGP P + G L GP+ +PG
Sbjct: 386 GYPGDPG------LNGPKGNPGLPGPKGDPGVGGAPGLRGLVGPTGPKGVPG 431
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 95/295 (32%), Gaps = 54/295 (18%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--------- 79
+PG L G + PG AP PG + G + P PG
Sbjct: 151 VPGKPGQQGLTGAPGSRGFPGEKGAPGAPGVNGQKGETGYGT-PGRPGERGLPGPQGPVG 209
Query: 80 -----APDLPGPSSAPDLPG--------------------------PSSAPDLPGPSSAP 108
G + P PG PG + +P
Sbjct: 210 PPGSPGVGRRGENGFPGQPGIKGDRGFPGEAGPPGPPGPQGPPGKQGREGIGKPGATGSP 269
Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 168
PG P G AP + GP AP G P L G LPG A GP+
Sbjct: 270 GRPG---IPGEKGHPGAPGIAGPPGAPGF-GKQGLPGLRGQRGPAGLPGAPGAKGEQGPA 325
Query: 169 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
P PG + +P GP +PG +PG L GP+ P G P L
Sbjct: 326 GHPGEPGLTGSPGNMGPQGPKGIPGNHG---IPGTKGETGLVGPAGPPGARGARGPPGLD 382
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
G + P PG L GP P LPGP P + G L GP+ +PG
Sbjct: 383 GKTGYPGDPG------LNGPKGNPGLPGPKGDPGVGGAPGLRGLVGPTGPKGVPG 431
>gi|308482253|ref|XP_003103330.1| CRE-LET-2 protein [Caenorhabditis remanei]
gi|308260120|gb|EFP04073.1| CRE-LET-2 protein [Caenorhabditis remanei]
Length = 1293
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 81/216 (37%), Gaps = 26/216 (12%)
Query: 58 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 117
G + P PG +P PG P +PG L G S P PG P L G
Sbjct: 763 GFAGTPGFPGLKGSPGYPGQDGLPGIPG------LKGESGYPGQPGQEGLPGLSGEKGQS 816
Query: 118 DLPGPSSAPDLPGPS--------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
LPG P PG S AP L G P LPG L G AP L G +
Sbjct: 817 GLPG---LPGQPGQSIPGPVGPPGAPGLQGKDGFPGLPGQKGDSGLNGLPGAPGLKGDAG 873
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
P PG A PG + P G P +PG P +PG L G LPG
Sbjct: 874 LPGFPG---AKGDPGSNGIPGKRGEDGLPGVPGRDGQPGIPG------LKGELGGAGLPG 924
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
P LPG LPG A PG +P +PG
Sbjct: 925 QPGFPGLPGIKGEGGLPGFPGAKGEPGFPGSPGVPG 960
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 105/341 (30%), Gaps = 71/341 (20%)
Query: 5 FDKHVFTEADYLPSTVTERPLEPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSS 61
F +T + ER + PG S AP PG P PG PG
Sbjct: 620 FKGEGWTSRIWTTRKRLERRDFQESPGKSGRQGAPGSPGQDGLPGFPGLKGEAGYPGQDG 679
Query: 62 APDLPGPSSAPDLPGPSS------------------APDLPG------PSSAPDLPGPSS 97
LPG P +PG P +PG S P +PG
Sbjct: 680 ---LPGRDGLPGVPGMKGDLGTAGQPGLPGGPGLDGQPGVPGIRGDKGQSGLPGIPGDRG 736
Query: 98 APDLPGPSSAPDL------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
PG G + P PG +P PG P +PG
Sbjct: 737 MDGFPGQKGENGYPGQPGLPGLGGEKGFAGTPGFPGLKGSPGYPGQDGLPGIPG------ 790
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--------------LPGPSSAPDL 191
L G S P PG P L G LPG P L G P L
Sbjct: 791 LKGESGYPGQPGQEGLPGLSGEKGQSGLPGLPGQPGQSIPGPVGPPGAPGLQGKDGFPGL 850
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
PG L G AP L G + P PG A PG + P G P +PG
Sbjct: 851 PGQKGDSGLNGLPGAPGLKGDAGLPGFPG---AKGDPGSNGIPGKRGEDGLPGVPGRDGQ 907
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P +PG L G LPG P LPG LPG
Sbjct: 908 PGIPG------LKGELGGAGLPGQPGFPGLPGIKGEGGLPG 942
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 45/115 (39%), Gaps = 6/115 (5%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+PG AP PG LPG AP L G P PG LPG S P PG
Sbjct: 380 VPGQPGAPGFPGLKGDAGLPGLPGAPGLEGQRGFPGAPGLKGENGLPGLSGQPGYPGEKG 439
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
LPG +PG +P PG P +PG LPG L G S A
Sbjct: 440 DAGLPG------VPGREGSPGFPGQDGLPGVPGQKGEDGLPGLPGVTGLKGDSGA 488
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 98/314 (31%), Positives = 105/314 (33%), Gaps = 62/314 (19%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-----SSAPDLPGPSSAP---DLPGPS 78
P LPG P L G AP G + P + GP + P PGP AP G
Sbjct: 18 PGLPGKDGKPGLDG---APGRKGENGLPGVRGPPGDSLNGLPGSPGPRGAPGPKGYDGRD 74
Query: 79 SAPDLPG-PSSAPDLPGPSSA-----PDLPGPSSAPDLPGPSSAPDLPG----------- 121
LPG P S D G SA G S P PGP LPG
Sbjct: 75 GINGLPGAPGSKGDRGGTCSACAPGTKGEKGLSGYPGQPGPQGDRGLPGMPGPVGDAGDD 134
Query: 122 ----------------PSSAPDLPGPSSAPD----LPGPSSAPDLPGPSSAPDLPGPSSA 161
P LPG P PGP P L G + P PG
Sbjct: 135 GLPGPAGRPGSPGPPGQDGFPGLPGQKGEPTQLVLRPGPPGYPGLKGENGYPGQPGNDGL 194
Query: 162 PDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
P P GP+ P PG LPG S PG P LPG P P L
Sbjct: 195 PGAPGPVGPAGQPGYPGEKGDAGLPGLSGK---PGQDGLPGLPGNKGEAGYGQPGQ-PGL 250
Query: 219 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 278
PG LPG P PG P P P + + P P P LPG P G S
Sbjct: 251 PGTKGDSGLPG---LPGTPGLQGMPGEPAPENQVN-PAPPGQPGLPG---LPGTKGESGY 303
Query: 279 PDLPGPSSAPDLPG 292
P PG P PG
Sbjct: 304 PGRPGEVGQPGFPG 317
Score = 38.1 bits (87), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 84/232 (36%), Gaps = 31/232 (13%)
Query: 72 PDLPGPSSAPD----LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 127
P LPG P PGP P L G + P PG P PGP GP+ P
Sbjct: 155 PGLPGQKGEPTQLVLRPGPPGYPGLKGENGYPGQPGNDGLPGAPGPV------GPAGQPG 208
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
PG LPG S P G P LPG P P LPG LPG
Sbjct: 209 YPGEKGDAGLPGLSGKP---GQDGLPGLPGNKGEAGYGQPGQ-PGLPGTKGDSGLPG--- 261
Query: 188 APDLPGPSSAPDLPGPSSA--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
P PG P P P + P PG P LPG G S P PG P
Sbjct: 262 LPGTPGLQGMPGEPAPENQVNPAPPGQPGLPGLPGTK------GESGYPGRPGEVGQPGF 315
Query: 246 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
PG P + G S P PG +PG +PG P +PGP V
Sbjct: 316 PG---LPGMKGDSGLPGPPGLPGHAGVPGEKGFGGVPG---LPGVPGPKGEV 361
>gi|321474928|gb|EFX85892.1| hypothetical protein DAPPUDRAFT_313736 [Daphnia pulex]
Length = 474
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 109/301 (36%), Gaps = 34/301 (11%)
Query: 39 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 98
PGP G AP + G L GP G + A PG +P G + A
Sbjct: 141 PGPQGLKGEQGADGAPGVAG------LNGPVGEKGEAGSNGADGAPGAQGSPGKDGYNGA 194
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGP------ 149
P GP PG + +PGP A PG AP PGP P GP
Sbjct: 195 PGPVGPKGEIGAPGITIESKIPGPPGATGYPGKDGAPGAAGSPGPQGNPGTQGPVGPAGK 254
Query: 150 ---SSAPDLPGPSSAPDLPGPSSAP---DLPG-PSSAPDLPGPSSAPDLPGPSSAP---D 199
+ +P + GP P PG + AP LPG PS+ P GP PG + AP
Sbjct: 255 NGYAGSPGIAGPKGEPGKPGYNGAPGKDGLPGAPSTQPGPVGPQGPVGKPGYNGAPGKDG 314
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
GP AP G + AP GP PG P G P GP GP+
Sbjct: 315 AVGPVGAPGKDGLNGAPGATGPQGEQGKPGKDGYPGSAGAPGTPGAQGPQGIQGEQGPAG 374
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPA 319
P GP GP+ PG + P PGP V Q P G E KP
Sbjct: 375 TPGSIGPQGEIGPVGPAGPEGKPGQAGKPGYPGPVGPV---------GQVGPVGQEGKPG 425
Query: 320 Q 320
Q
Sbjct: 426 Q 426
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 92/242 (38%), Gaps = 10/242 (4%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E G + A PG +P G + AP GP PG + +PGP A PG
Sbjct: 167 EKGEAGSNGADGAPGAQGSPGKDGYNGAPGPVGPKGEIGAPGITIESKIPGPPGATGYPG 226
Query: 86 PSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPG 139
AP PGP P GP G + +P + GP P PG + AP LPG
Sbjct: 227 KDGAPGAAGSPGPQGNPGTQGPVGPAGKNGYAGSPGIAGPKGEPGKPGYNGAPGKDGLPG 286
Query: 140 -PSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
PS+ P GP PG + AP GP AP G + AP GP PG
Sbjct: 287 APSTQPGPVGPQGPVGKPGYNGAPGKDGAVGPVGAPGKDGLNGAPGATGPQGEQGKPGKD 346
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
P G P GP GP+ P GP GP+ PG + P P
Sbjct: 347 GYPGSAGAPGTPGAQGPQGIQGEQGPAGTPGSIGPQGEIGPVGPAGPEGKPGQAGKPGYP 406
Query: 256 GP 257
GP
Sbjct: 407 GP 408
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 77/198 (38%), Gaps = 10/198 (5%)
Query: 25 LEPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
+E +PGP A PG AP PGP P GP G + +P + GP P
Sbjct: 211 IESKIPGPPGATGYPGKDGAPGAAGSPGPQGNPGTQGPVGPAGKNGYAGSPGIAGPKGEP 270
Query: 82 DLPGPSSAP---DLPG-PSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSA 134
PG + AP LPG PS+ P GP PG + AP GP AP G + A
Sbjct: 271 GKPGYNGAPGKDGLPGAPSTQPGPVGPQGPVGKPGYNGAPGKDGAVGPVGAPGKDGLNGA 330
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
P GP PG P G P GP GP+ P GP GP
Sbjct: 331 PGATGPQGEQGKPGKDGYPGSAGAPGTPGAQGPQGIQGEQGPAGTPGSIGPQGEIGPVGP 390
Query: 195 SSAPDLPGPSSAPDLPGP 212
+ PG + P PGP
Sbjct: 391 AGPEGKPGQAGKPGYPGP 408
>gi|187957632|gb|AAI40856.1| COL4A6 protein [Homo sapiens]
Length = 1633
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 107/296 (36%), Gaps = 35/296 (11%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 660 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPR 716
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 717 GEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 770
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
G S P L G P L GP +P PG P PG S + G S P
Sbjct: 771 HKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLP- 829
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 830 -----GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPG------LVGLKG 878
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+P PG + P L GP G P +PG P +PG +PG + +
Sbjct: 879 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGKM 931
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 105/293 (35%), Gaps = 41/293 (13%)
Query: 29 LPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPD 82
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 631 LPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQPG 690
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 691 SSGSKGEPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMIG 738
Query: 143 APDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-- 195
+P LPG A D+ G + L G + G S P L G P L GP
Sbjct: 739 SPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGE 798
Query: 196 -SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDL---------PGPSSA 242
+P PG P PG S + G S AP PG S P PG
Sbjct: 799 RGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSIVK 858
Query: 243 PDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P L G +P PG + P L GP G P +PG
Sbjct: 859 KGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG 911
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 98/277 (35%), Gaps = 32/277 (11%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPS 78
+ P P PGP LPG P LPG LPG +P LPG A D+ G
Sbjct: 703 LVHLPELPGFPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAE 756
Query: 79 SA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGP 131
+ L G + G S P L G P L GP +P PG P PG
Sbjct: 757 NGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGS 816
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
S + G S P AP PG S P G PG LPG P
Sbjct: 817 SGPYGIKGKSGLP------GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGN 870
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
PG L G +P PG + P L GP G P +PG P +PG
Sbjct: 871 PG------LVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGL 921
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
+PG + GPS PG PGP P
Sbjct: 922 KGIPGSTGK---MGPSGRAGTPGEKGDRGNPGPVGIP 955
>gi|333991474|ref|YP_004524088.1| FHA domain-containing protein [Mycobacterium sp. JDM601]
gi|333487442|gb|AEF36834.1| FHA domain-containing protein [Mycobacterium sp. JDM601]
Length = 857
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 68/106 (64%), Gaps = 6/106 (5%)
Query: 46 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 105
++ PSS+ D+P PSS+ D P PSS+ ++ PS + + P PSSA D P PSSA D P PS
Sbjct: 618 EVAKPSSSADVPEPSSSADKPEPSSSAEVSKPSVSVEEPKPSSA-DEPKPSSA-DEPKPS 675
Query: 106 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
SA D P PSSA D P PSSA D P PSS + P SS+ D P S+
Sbjct: 676 SA-DEPKPSSA-DEPKPSSA-DEPKPSST-EKPKSSSSVDEPQRSA 717
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 68/106 (64%), Gaps = 6/106 (5%)
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
++ PSS+ D+P PSS+ D P PSS+ ++ PS + + P PSSA D P PSSA D P PS
Sbjct: 618 EVAKPSSSADVPEPSSSADKPEPSSSAEVSKPSVSVEEPKPSSA-DEPKPSSA-DEPKPS 675
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
SA D P PSSA D P PSSA D P PSS + P SS+ D P S+
Sbjct: 676 SA-DEPKPSSA-DEPKPSSA-DEPKPSST-EKPKSSSSVDEPQRSA 717
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 62/97 (63%), Gaps = 6/97 (6%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D+P PSS+ D P PSS+ ++ PS + + P PSSA D P PSSA D P PSSA D P PS
Sbjct: 627 DVPEPSSSADKPEPSSSAEVSKPSVSVEEPKPSSA-DEPKPSSA-DEPKPSSA-DEPKPS 683
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
SA D P PSSA D P PSS + P SS+ D P S+
Sbjct: 684 SA-DEPKPSSA-DEPKPSST-EKPKSSSSVDEPQRSA 717
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 53/79 (67%), Gaps = 4/79 (5%)
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 276
++ PSS+ D+P PSS+ D P PSS+ ++ PS + + P PSSA D P PSSA D P PS
Sbjct: 618 EVAKPSSSADVPEPSSSADKPEPSSSAEVSKPSVSVEEPKPSSA-DEPKPSSA-DEPKPS 675
Query: 277 SAPDLPGPSSAPDLPGPSS 295
SA D P PSSA D P PSS
Sbjct: 676 SA-DEPKPSSA-DEPKPSS 692
>gi|170031171|ref|XP_001843460.1| collagen alpha chain [Culex quinquefasciatus]
gi|167869236|gb|EDS32619.1| collagen alpha chain [Culex quinquefasciatus]
Length = 1839
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 80/232 (34%), Gaps = 21/232 (9%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
P G + P PGP L GP GP LPGP GP P
Sbjct: 906 GTPGFKGDTGQPGAPGPQGEIGLQGPE------GPRGFIGLPGPQGNNGKDGPQGTPGER 959
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
GP PGP+ AP + GP PGP P +PG LPG P +PG +
Sbjct: 960 GPPGENGNPGPTGAPGVIGPQGQTGEPGPVGEPGIPG------LPGMPGEPGVPGDTGKE 1013
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 222
GP P GP A L G PG +PG P L G P GP
Sbjct: 1014 GQVGPPGPPGKNGPPGAQGLSG------FPGERGMMGMPG---LPGLKGEIGVPGNSGPV 1064
Query: 223 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
PG PGP GP + L G L GP LPG
Sbjct: 1065 GDKGQPGEPGKEGPPGPEGRRGQTGPPGSVGLKGERGDMGLMGPIGRDGLPG 1116
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 69/220 (31%), Gaps = 15/220 (6%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
GPS GP + GP GP P G S G PGP+
Sbjct: 801 GPSGERGAIGPQGITGIEGPEGPKGFEGPRGEPGAMGLSGEKGKQGVQGFTGYPGPTGDK 860
Query: 91 DLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
G L G L G G G P G + P P
Sbjct: 861 GDKGSVGISGLTGDKGERGNTGLQGERGEVGPRGFRGPRGRRGADGTPGFKGDTGQPGAP 920
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
GP L GP GP LPGP GP P GP PGP+ AP
Sbjct: 921 GPQGEIGLQGPE------GPRGFIGLPGPQGNNGKDGPQGTPGERGPPGENGNPGPTGAP 974
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
+ GP PGP P +PG LPG P +PG
Sbjct: 975 GVIGPQGQTGEPGPVGEPGIPG------LPGMPGEPGVPG 1008
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 75/229 (32%), Gaps = 33/229 (14%)
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
P G + P PGP L GP GP LPGP GP P
Sbjct: 906 GTPGFKGDTGQPGAPGPQGEIGLQGPE------GPRGFIGLPGPQGNNGKDGPQGTPGER 959
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
GP PGP+ AP + GP PGP P +PG LPG P +PG +
Sbjct: 960 GPPGENGNPGPTGAPGVIGPQGQTGEPGPVGEPGIPG------LPGMPGEPGVPGDTGKE 1013
Query: 199 ---------------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
G S P G P LPG +PG S GP
Sbjct: 1014 GQVGPPGPPGKNGPPGAQGLSGFPGERGMMGMPGLPGLKGEIGVPGNS------GPVGDK 1067
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
PG PGP GP + L G L GP LPG
Sbjct: 1068 GQPGEPGKEGPPGPEGRRGQTGPPGSVGLKGERGDMGLMGPIGRDGLPG 1116
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 76/216 (35%), Gaps = 18/216 (8%)
Query: 26 EPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PGP L GP LPGP GP P GP PGP+ AP
Sbjct: 916 QPGAPGPQGEIGLQGPEGPRGFIGLPGPQGNNGKDGPQGTPGERGPPGENGNPGPTGAPG 975
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
+ GP PGP P +PG LPG P +PG + GP P GP
Sbjct: 976 VIGPQGQTGEPGPVGEPGIPG------LPGMPGEPGVPGDTGKEGQVGPPGPPGKNGPPG 1029
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
A L G PG +PG P L G P GP PG PG
Sbjct: 1030 AQGLSG------FPGERGMMGMPG---LPGLKGEIGVPGNSGPVGDKGQPGEPGKEGPPG 1080
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
P GP + L G L GP LPG
Sbjct: 1081 PEGRRGQTGPPGSVGLKGERGDMGLMGPIGRDGLPG 1116
>gi|440891573|gb|ELR45178.1| Collagen alpha-5(IV) chain, partial [Bos grunniens mutus]
Length = 1658
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 71/190 (37%), Gaps = 26/190 (13%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P++PDL G PG P + GP LPG P L G P L GP P L
Sbjct: 927 PMDPDLLGSKGEKGDPGLPGIPGVAGPKGYQGLPGDPGQPGLSGQPGLPGLAGPKGNPGL 986
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---------------APDLPGPSSAPDL 128
PG +PG + P L G PGP +P LPG
Sbjct: 987 PG------MPGLTGPPGLKGNMGDMGFPGPQGPKGSFGPPGVPGQPGSPGLPGQKGEKGD 1040
Query: 129 PGPSSA--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
PG S P LPGP P LPG P G LPG P PG P LPG
Sbjct: 1041 PGISGIGLPGLPGPKGEPGLPGYPGNPGTKGSMGETGLPG---LPGTPGAKGQPGLPGFP 1097
Query: 187 SAPDLPGPSS 196
P LPGP
Sbjct: 1098 GTPGLPGPKG 1107
>gi|194680449|ref|XP_001790185.1| PREDICTED: collagen alpha-5(IV) chain isoform 1 [Bos taurus]
Length = 1691
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 93/284 (32%), Gaps = 63/284 (22%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P++PDL G PG P + GP LPG P L G P L GP P L
Sbjct: 954 PMDPDLLGSKGEKGDPGLPGIPGVAGPKGYQGLPGDPGQPGLSGQPGLPGLAGPKGNPGL 1013
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---------------APDLPGPSSAPDL 128
PG +PG + P L G PGP +P LPG
Sbjct: 1014 PG------MPGLTGPPGLKGNMGDMGFPGPQGPKGSFGPPGVPGQPGSPGLPGQKGEKGD 1067
Query: 129 PGPSSA--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
PG S P LPG P LPG P G LPG P PG P LPG
Sbjct: 1068 PGISGIGLPGLPGAKGEPGLPGYPGNPGTKGSMGETGLPG---LPGTPGAKGQPGLPGFP 1124
Query: 187 SAPDLPGPSSAP------------------------------------DLPGPSSAPDLP 210
P LPGP +PGP+ P
Sbjct: 1125 GTPGLPGPKGISGPPGNPGLPGEPGPVGGGGRPGPPGPPGEKGKPGQDGIPGPAGQKGEP 1184
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
G +PGP P L G LPG P LPGP P
Sbjct: 1185 G-QPGFGIPGPRGLPGLSGQKGDEGLPGIPGNPGLPGPKGEPGF 1227
>gi|327267097|ref|XP_003218339.1| PREDICTED: collagen alpha-3(IV) chain-like [Anolis carolinensis]
Length = 1418
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 95/286 (33%), Gaps = 30/286 (10%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
P V P P L GP+ P L G + G P LPGP P L P PG
Sbjct: 440 PGMVIAIPGAPGLQGPAGRPGLQGVRGSVGSRGQRGDPGLPGPDGDPGLV-QIGFPGYPG 498
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSA 134
L G + P PG P LPG P + G P +PG PG
Sbjct: 499 LKGDKGLQGSTGPPGCPGTLGEPGLPG---RPGISGEKGEPGPFIPGAQGRLGSPGEEGM 555
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-- 192
P G P L GP P G A G +P +PG P G
Sbjct: 556 PGEKGERGFPGLQGP---PGQQGQDGADGPRGEPGSPGVPGEKGVPGKMGDCLVGLPGPP 612
Query: 193 ---------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
G P +PG P PG P +PGP PG P P
Sbjct: 613 GPCGVVGPPGGRGAIGAKGDPGIPG-LDIPGFPGQFGLPGIPGPQGNDGPPGNKGQPGRP 671
Query: 238 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
G P +PGP L GP P L G P +PG +P G
Sbjct: 672 G---VPGIPGPRGEMGLMGPVGNPGLSGVPGNPGIPGIRGSPGFSG 714
Score = 38.1 bits (87), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 79/228 (34%), Gaps = 24/228 (10%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPG-------PS 123
L G S + G P L G A GP G S +P LPG P
Sbjct: 350 LRGTSGERGMDGLPGEPGLKGTRGSVGAQGSDGPKGDRGPQGSSGSPGLPGEVGLSGPPG 409
Query: 124 SAPD-LPGPSSAPDLPGPSSAPDLPGPSSAPDL----PGPSSAPDLPGPSSAPDLPGPSS 178
P L G PGPS P GP P + PG AP L GP+ P L G
Sbjct: 410 YGPQGLKGSQGTQGDPGPSGLPGTSGPKGDPGMVIAIPG---APGLQGPAGRPGLQGVRG 466
Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
+ G P LPGP P L P PG L G + P PG P LPG
Sbjct: 467 SVGSRGQRGDPGLPGPDGDPGLV-QIGFPGYPGLKGDKGLQGSTGPPGCPGTLGEPGLPG 525
Query: 239 PSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
P + G P +PG PG P G P L GP
Sbjct: 526 ---RPGISGEKGEPGPFIPGAQGRLGSPGEEGMPGEKGERGFPGLQGP 570
>gi|340730046|ref|XP_003403300.1| PREDICTED: collagen alpha-2(IV) chain-like isoform 2 [Bombus
terrestris]
Length = 892
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 105/310 (33%), Gaps = 46/310 (14%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 80
P E PG +P G S P PGP P +PGP L G + A PG
Sbjct: 418 PGERGFPGQDGSPGSEGRSGLPGFPGPKGEIGFPGVPGPQGLQGLRGEAGALGPPGIQGQ 477
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
G LPG LPGP G LPG P GP P L G
Sbjct: 478 KGEAGEPGRDGLPGSMVGSILPGPPGPEGPRGSPGEDGLPGVKGEPGPVGPPGLPGLQGK 537
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
AP GP + PG P +PGP + G P LPG G
Sbjct: 538 DGAPGSLGPPGSQGSPGLPGEPGVPGPRG---IEGAIGKPGLPGLDGRSAEKGDRGHQGE 594
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS----------------------------- 231
GP LPG AP LPG + P L G
Sbjct: 595 QGPVGPRGLPGSVGAPGLPGVAGIPGLEGRPGPPGAPGPPGPAGPPGTISDMLNTNNILE 654
Query: 232 --SAPDLPGP---SSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPG 283
+P + GP S AP LPG P GP P +PG AP L GP P + G
Sbjct: 655 TIGSPGVSGPRGASGAPGLPGERGPPGERGPEGQMGLPGIPGKDGAPGLQGP---PGIRG 711
Query: 284 PSSAPDLPGP 293
+ P + GP
Sbjct: 712 QTGMPGVQGP 721
>gi|432092326|gb|ELK24946.1| Collagen alpha-1(IV) chain, partial [Myotis davidii]
Length = 1600
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 80/224 (35%), Gaps = 18/224 (8%)
Query: 28 DLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 84
D+PGP LPG + LPGP PG L G PG P P
Sbjct: 768 DMPGPKGDKGTQGLPGLTGQSGLPGPPGQQGTPGLPGFQGLKGEMGVMGTPG---QPGSP 824
Query: 85 GPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
GP+ P PG P GP P + G A LPG D + G
Sbjct: 825 GPAGTPGFPGEKGDHGFPGSVGPRGDPGVKGEKGAVGLPGKPGTVDKTDMDTMKGEKGDP 884
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA- 197
GPS G P LPG + P PGP P + G +P LPGP +
Sbjct: 885 GDKGQVGPSGDKGSQGDPGTPGLPGKDGQAGHPGQPGPKGDPGISGTPGSPGLPGPKGSV 944
Query: 198 -----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
P PG P +PG AP LPG A G + P +
Sbjct: 945 GGMGLPGSPGEKGVPGIPGSQGAPGLPGEKGAKGEKGQAGRPGI 988
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 108/327 (33%), Gaps = 72/327 (22%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPG AP LPG P G P + G A PG PGP P L GP
Sbjct: 669 LPGLKGAPGLPGTPGTPGEKGNIGGPGIRGEHGAIGPPGLQGIRGDPGP---PGLQGPKG 725
Query: 89 A--------------------------PDLPGPSSAPDLPGPSSAPDLPGPS------SA 116
A P + G P PG D+PGP
Sbjct: 726 APGVPGVGPPGLMGPPGRQGPPGSSGPPGVKGEKGFPGFPG----LDMPGPKGDKGTQGL 781
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPS------------SAPDLPGPSSAPDLPGPSSAPDL 164
P L G S P PG P LPG P PGP+ P PG
Sbjct: 782 PGLTGQSGLPGPPGQQGTPGLPGFQGLKGEMGVMGTPGQPGSPGPAGTPGFPGEKGDHGF 841
Query: 165 P---GPSSAPDLPGPSSAPDLPGPSSAPD------LPGPSSAP---DLPGPSSAPDLPGP 212
P GP P + G A LPG D + G P GPS G
Sbjct: 842 PGSVGPRGDPGVKGEKGAVGLPGKPGTVDKTDMDTMKGEKGDPGDKGQVGPSGDKGSQGD 901
Query: 213 SSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 263
P LPG + P PGP P + G +P LPGP + P PG P +
Sbjct: 902 PGTPGLPGKDGQAGHPGQPGPKGDPGISGTPGSPGLPGPKGSVGGMGLPGSPGEKGVPGI 961
Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDL 290
PG AP LPG A G + P +
Sbjct: 962 PGSQGAPGLPGEKGAKGEKGQAGRPGI 988
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 72/207 (34%), Gaps = 24/207 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSS------------APDLPGPSSAPDLPGPSSAPDL 74
P L G S P PG P LPG P PGP+ P PG
Sbjct: 782 PGLTGQSGLPGPPGQQGTPGLPGFQGLKGEMGVMGTPGQPGSPGPAGTPGFPGEKGDHGF 841
Query: 75 P---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
P GP P + G A LPG D + G GPS G
Sbjct: 842 PGSVGPRGDPGVKGEKGAVGLPGKPGTVDKTDMDTMKGEKGDPGDKGQVGPSGDKGSQGD 901
Query: 132 SSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 182
P LPG + P PGP P + G +P LPGP + P PG P +
Sbjct: 902 PGTPGLPGKDGQAGHPGQPGPKGDPGISGTPGSPGLPGPKGSVGGMGLPGSPGEKGVPGI 961
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDL 209
PG AP LPG A G + P +
Sbjct: 962 PGSQGAPGLPGEKGAKGEKGQAGRPGI 988
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 64/175 (36%), Gaps = 12/175 (6%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPG 76
V P +P PGP+ P PG PG P P + G A LPG D
Sbjct: 814 VMGTPGQPGSPGPAGTPGFPGEKGDHGFPGSVGPRGDPGVKGEKGAVGLPGKPGTVDKTD 873
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSS 133
+ G GPS G P LPG + P PGP P + G
Sbjct: 874 MDTMKGEKGDPGDKGQVGPSGDKGSQGDPGTPGLPGKDGQAGHPGQPGPKGDPGISGTPG 933
Query: 134 APDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
+P LPGP + P PG P +PG AP LPG A G + P +
Sbjct: 934 SPGLPGPKGSVGGMGLPGSPGEKGVPGIPGSQGAPGLPGEKGAKGEKGQAGRPGI 988
>gi|194680453|ref|XP_001790186.1| PREDICTED: collagen alpha-5(IV) chain isoform 2 [Bos taurus]
Length = 1685
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 93/284 (32%), Gaps = 63/284 (22%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P++PDL G PG P + GP LPG P L G P L GP P L
Sbjct: 954 PMDPDLLGSKGEKGDPGLPGIPGVAGPKGYQGLPGDPGQPGLSGQPGLPGLAGPKGNPGL 1013
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---------------APDLPGPSSAPDL 128
PG +PG + P L G PGP +P LPG
Sbjct: 1014 PG------MPGLTGPPGLKGNMGDMGFPGPQGPKGSFGPPGVPGQPGSPGLPGQKGEKGD 1067
Query: 129 PGPSSA--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
PG S P LPG P LPG P G LPG P PG P LPG
Sbjct: 1068 PGISGIGLPGLPGAKGEPGLPGYPGNPGTKGSMGETGLPG---LPGTPGAKGQPGLPGFP 1124
Query: 187 SAPDLPGPSSAP------------------------------------DLPGPSSAPDLP 210
P LPGP +PGP+ P
Sbjct: 1125 GTPGLPGPKGISGPPGNPGLPGEPGPVGGGGRPGPPGPPGEKGKPGQDGIPGPAGQKGEP 1184
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
G +PGP P L G LPG P LPGP P
Sbjct: 1185 G-QPGFGIPGPRGLPGLSGQKGDEGLPGIPGNPGLPGPKGEPGF 1227
>gi|149016264|gb|EDL75510.1| similar to procollagen, type IV, alpha 3 [Rattus norvegicus]
Length = 1618
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 80/242 (33%), Gaps = 26/242 (10%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
PG + P LPG + G P + G P + G PGP AP L G
Sbjct: 843 YPGTTGLPGLPGKPGSQGQRGNLGIPGVKGERGRPGVKGERGEKGKPGPPHAPHLKGDKG 902
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P L G P G P LPGP +PG P PGP G S P PG
Sbjct: 903 EPGLKGFVGNPGEKGNRGNPGLPGPKGLEGVPG---LPGSPGPRGD---TGSSGDPGRPG 956
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
P P G P G PG + P LPG +PGP PG S
Sbjct: 957 PQGLPGSMGNMGVPGPKGRKGTSGFPGVAGRPGLPG------IPGPQGDKGEPGYSEGAS 1010
Query: 209 L--------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
G LPGP GP AP PG P PGP L
Sbjct: 1011 PGPPGPKGDPGLPGDKGKKGERGLPGPPGHSGPAGPDGAPGSPGSPGHPGRPGPDGDSGL 1070
Query: 255 PG 256
G
Sbjct: 1071 KG 1072
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 80/242 (33%), Gaps = 26/242 (10%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
PG + P LPG + G P + G P + G PGP AP L G
Sbjct: 843 YPGTTGLPGLPGKPGSQGQRGNLGIPGVKGERGRPGVKGERGEKGKPGPPHAPHLKGDKG 902
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
P L G P G P LPGP +PG P PGP G S P PG
Sbjct: 903 EPGLKGFVGNPGEKGNRGNPGLPGPKGLEGVPG---LPGSPGPRGDT---GSSGDPGRPG 956
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
P P G P G PG + P LPG +PGP PG S
Sbjct: 957 PQGLPGSMGNMGVPGPKGRKGTSGFPGVAGRPGLPG------IPGPQGDKGEPGYSEGAS 1010
Query: 245 L--------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
G LPGP GP AP PG P PGP L
Sbjct: 1011 PGPPGPKGDPGLPGDKGKKGERGLPGPPGHSGPAGPDGAPGSPGSPGHPGRPGPDGDSGL 1070
Query: 291 PG 292
G
Sbjct: 1071 KG 1072
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 68/210 (32%), Gaps = 36/210 (17%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
+P ER P + G PGP AP L G P L G P G P LP
Sbjct: 867 IPGVKGERG-RPGVKGERGEKGKPGPPHAPHLKGDKGEPGLKGFVGNPGEKGNRGNPGLP 925
Query: 76 GPSSAPDLPG------------PSSAPDLPGPSSAPDLPGPSSAPDLPGP------SSAP 117
GP +PG S P PGP LPG +PGP S P
Sbjct: 926 GPKGLEGVPGLPGSPGPRGDTGSSGDPGRPGPQG---LPGSMGNMGVPGPKGRKGTSGFP 982
Query: 118 DLPGPSSAPDLPGPSSAPDLPGPSSAPDL--------------PGPSSAPDLPGPSSAPD 163
+ G P +PGP PG S G LPGP
Sbjct: 983 GVAGRPGLPGIPGPQGDKGEPGYSEGASPGPPGPKGDPGLPGDKGKKGERGLPGPPGHSG 1042
Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
GP AP PG P PGP L G
Sbjct: 1043 PAGPDGAPGSPGSPGHPGRPGPDGDSGLKG 1072
>gi|297492844|ref|XP_002699906.1| PREDICTED: collagen alpha-5(IV) chain isoform 1 [Bos taurus]
gi|296470939|tpg|DAA13054.1| TPA: type IV collagen alpha 5-like isoform 1 [Bos taurus]
Length = 1691
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 93/284 (32%), Gaps = 63/284 (22%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P++PDL G PG P + GP LPG P L G P L GP P L
Sbjct: 954 PMDPDLLGSKGEKGDPGLPGIPGVAGPKGYQGLPGDPGQPGLSGQPGLPGLAGPKGNPGL 1013
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---------------APDLPGPSSAPDL 128
PG +PG + P L G PGP +P LPG
Sbjct: 1014 PG------MPGLTGPPGLKGNMGDMGFPGPQGPKGSFGPPGVPGQPGSPGLPGQKGEKGD 1067
Query: 129 PGPSSA--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
PG S P LPG P LPG P G LPG P PG P LPG
Sbjct: 1068 PGISGIGLPGLPGAKGEPGLPGYPGNPGTKGSMGETGLPG---LPGTPGAKGQPGLPGFP 1124
Query: 187 SAPDLPGPSSAP------------------------------------DLPGPSSAPDLP 210
P LPGP +PGP+ P
Sbjct: 1125 GTPGLPGPKGISGPPGNPGLPGEPGPVGGGGRPGPPGPPGEKGKPGQDGIPGPAGQKGEP 1184
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
G +PGP P L G LPG P LPGP P
Sbjct: 1185 G-QPGFGIPGPRGLPGLSGQKGDEGLPGIPGNPGLPGPKGEPGF 1227
>gi|209364566|ref|NP_001129231.1| collagen alpha-3(IV) chain precursor [Rattus norvegicus]
Length = 1670
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 80/242 (33%), Gaps = 26/242 (10%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
PG + P LPG + G P + G P + G PGP AP L G
Sbjct: 895 YPGTTGLPGLPGKPGSQGQRGNLGIPGVKGERGRPGVKGERGEKGKPGPPHAPHLKGDKG 954
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P L G P G P LPGP +PG P PGP G S P PG
Sbjct: 955 EPGLKGFVGNPGEKGNRGNPGLPGPKGLEGVPG---LPGSPGPRGD---TGSSGDPGRPG 1008
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
P P G P G PG + P LPG +PGP PG S
Sbjct: 1009 PQGLPGSMGNMGVPGPKGRKGTSGFPGVAGRPGLPG------IPGPQGDKGEPGYSEGAS 1062
Query: 209 L--------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
G LPGP GP AP PG P PGP L
Sbjct: 1063 PGPPGPKGDPGLPGDKGKKGERGLPGPPGHSGPAGPDGAPGSPGSPGHPGRPGPDGDSGL 1122
Query: 255 PG 256
G
Sbjct: 1123 KG 1124
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 80/242 (33%), Gaps = 26/242 (10%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
PG + P LPG + G P + G P + G PGP AP L G
Sbjct: 895 YPGTTGLPGLPGKPGSQGQRGNLGIPGVKGERGRPGVKGERGEKGKPGPPHAPHLKGDKG 954
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
P L G P G P LPGP +PG P PGP G S P PG
Sbjct: 955 EPGLKGFVGNPGEKGNRGNPGLPGPKGLEGVPG---LPGSPGPRGDT---GSSGDPGRPG 1008
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
P P G P G PG + P LPG +PGP PG S
Sbjct: 1009 PQGLPGSMGNMGVPGPKGRKGTSGFPGVAGRPGLPG------IPGPQGDKGEPGYSEGAS 1062
Query: 245 L--------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
G LPGP GP AP PG P PGP L
Sbjct: 1063 PGPPGPKGDPGLPGDKGKKGERGLPGPPGHSGPAGPDGAPGSPGSPGHPGRPGPDGDSGL 1122
Query: 291 PG 292
G
Sbjct: 1123 KG 1124
Score = 38.1 bits (87), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 68/210 (32%), Gaps = 36/210 (17%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
+P ER P + G PGP AP L G P L G P G P LP
Sbjct: 919 IPGVKGERG-RPGVKGERGEKGKPGPPHAPHLKGDKGEPGLKGFVGNPGEKGNRGNPGLP 977
Query: 76 GPSSAPDLPG------------PSSAPDLPGPSSAPDLPGPSSAPDLPGP------SSAP 117
GP +PG S P PGP LPG +PGP S P
Sbjct: 978 GPKGLEGVPGLPGSPGPRGDTGSSGDPGRPGPQG---LPGSMGNMGVPGPKGRKGTSGFP 1034
Query: 118 DLPGPSSAPDLPGPSSAPDLPGPSSAPDL--------------PGPSSAPDLPGPSSAPD 163
+ G P +PGP PG S G LPGP
Sbjct: 1035 GVAGRPGLPGIPGPQGDKGEPGYSEGASPGPPGPKGDPGLPGDKGKKGERGLPGPPGHSG 1094
Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
GP AP PG P PGP L G
Sbjct: 1095 PAGPDGAPGSPGSPGHPGRPGPDGDSGLKG 1124
>gi|319996697|ref|NP_001188438.1| Col10a1 precursor [Oryzias latipes]
gi|283488095|gb|ADB24735.1| Col10a1 [Oryzias latipes]
Length = 643
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 111/322 (34%), Gaps = 55/322 (17%)
Query: 23 RPLEPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL--PGPS 78
+P P +PGP+ SA PGP+ P GP P L G P LPGP + PGP
Sbjct: 118 QPGSPGIPGPAGLSATGKPGPAGLPGSVGPRGEPGLKGHPGVPGLPGPKGDRGVGAPGPQ 177
Query: 79 -----------------------SAPDLPGPSSAPDLPGPSSAPDLPGPS---------- 105
P PG S P PG AP GP
Sbjct: 178 GETGAQGPMGPPGAPGAAGIGRPGKPGAPGESGKPGSPGLDGAPGPMGPQGPKGHTGAPG 237
Query: 106 -SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDL---PGPSSAPDLPGPS 159
P PG + AP LPG + GP+ AP PG P + G A PG +
Sbjct: 238 VGLPGKPGENGAPGLPGSAGPKGHQGPAGAPGSPGVPGYGKPGVNGEKGERGASGSPGAT 297
Query: 160 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
A GP+ G + GP PG P GP GP
Sbjct: 298 GAKGEQGPTGYTGATGATGPTGPTGPQGERGFPG---QPGAVGPKGDTGATGPQGLKGHK 354
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDLPGP------SSAPDLPGPSSAPDLPGPSSAPDLP 273
G A PG P GP + GP + AP PG AP +PGP+ P
Sbjct: 355 GDQGAQGFPGKQGYPGAAGPPGSRGATGPQGDKGHTGAPGTPG---APGIPGPAGPKGHP 411
Query: 274 GPSSAPDLPGPSSAPDLPGPSS 295
G P PG AP GPS
Sbjct: 412 GRQGEPGSPGSDGAPGPRGPSG 433
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 101/278 (36%), Gaps = 24/278 (8%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP +P PG S P PG AP GP GP PG P PG + AP
Sbjct: 199 RPGKPGAPGESGKPGSPGLDGAPGPMGPQ------GPKGHTGAPG-VGLPGKPGENGAPG 251
Query: 83 LPGPSSAPDLPGPSSAPDLPG--PSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDL 137
LPG + GP+ AP PG P + G A PG + A GP+
Sbjct: 252 LPGSAGPKGHQGPAGAPGSPGVPGYGKPGVNGEKGERGASGSPGATGAKGEQGPTGYTGA 311
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
G + GP PG P GP GP G A PG
Sbjct: 312 TGATGPTGPTGPQGERGFPG---QPGAVGPKGDTGATGPQGLKGHKGDQGAQGFPGKQGY 368
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
P GP + GP G + AP PG AP +PGP+ PG P PG
Sbjct: 369 PGAAGPPGSRGATGPQGDK---GHTGAPGTPG---APGIPGPAGPKGHPGRQGEPGSPGS 422
Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
AP GP S P GPS L G P PGP+
Sbjct: 423 DGAPGPRGP-SGPQ--GPSGPAGLKGHPGLPGAPGPAG 457
>gi|297492848|ref|XP_002699908.1| PREDICTED: collagen alpha-5(IV) chain isoform 3 [Bos taurus]
gi|296470941|tpg|DAA13056.1| TPA: type IV collagen alpha 5-like isoform 3 [Bos taurus]
Length = 1685
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 93/284 (32%), Gaps = 63/284 (22%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P++PDL G PG P + GP LPG P L G P L GP P L
Sbjct: 954 PMDPDLLGSKGEKGDPGLPGIPGVAGPKGYQGLPGDPGQPGLSGQPGLPGLAGPKGNPGL 1013
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---------------APDLPGPSSAPDL 128
PG +PG + P L G PGP +P LPG
Sbjct: 1014 PG------MPGLTGPPGLKGNMGDMGFPGPQGPKGSFGPPGVPGQPGSPGLPGQKGEKGD 1067
Query: 129 PGPSSA--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
PG S P LPG P LPG P G LPG P PG P LPG
Sbjct: 1068 PGISGIGLPGLPGAKGEPGLPGYPGNPGTKGSMGETGLPG---LPGTPGAKGQPGLPGFP 1124
Query: 187 SAPDLPGPSSAP------------------------------------DLPGPSSAPDLP 210
P LPGP +PGP+ P
Sbjct: 1125 GTPGLPGPKGISGPPGNPGLPGEPGPVGGGGRPGPPGPPGEKGKPGQDGIPGPAGQKGEP 1184
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
G +PGP P L G LPG P LPGP P
Sbjct: 1185 G-QPGFGIPGPRGLPGLSGQKGDEGLPGIPGNPGLPGPKGEPGF 1227
>gi|296470940|tpg|DAA13055.1| TPA: type IV collagen alpha 5-like isoform 2 [Bos taurus]
Length = 1688
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 93/284 (32%), Gaps = 63/284 (22%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P++PDL G PG P + GP LPG P L G P L GP P L
Sbjct: 954 PMDPDLLGSKGEKGDPGLPGIPGVAGPKGYQGLPGDPGQPGLSGQPGLPGLAGPKGNPGL 1013
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---------------APDLPGPSSAPDL 128
PG +PG + P L G PGP +P LPG
Sbjct: 1014 PG------MPGLTGPPGLKGNMGDMGFPGPQGPKGSFGPPGVPGQPGSPGLPGQKGEKGD 1067
Query: 129 PGPSSA--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
PG S P LPG P LPG P G LPG P PG P LPG
Sbjct: 1068 PGISGIGLPGLPGAKGEPGLPGYPGNPGTKGSMGETGLPG---LPGTPGAKGQPGLPGFP 1124
Query: 187 SAPDLPGPSSAP------------------------------------DLPGPSSAPDLP 210
P LPGP +PGP+ P
Sbjct: 1125 GTPGLPGPKGISGPPGNPGLPGEPGPVGGGGRPGPPGPPGEKGKPGQDGIPGPAGQKGEP 1184
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
G +PGP P L G LPG P LPGP P
Sbjct: 1185 G-QPGFGIPGPRGLPGLSGQKGDEGLPGIPGNPGLPGPKGEPGF 1227
>gi|291396813|ref|XP_002714770.1| PREDICTED: type X collagen alpha 1 [Oryctolagus cuniculus]
Length = 680
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 78/197 (39%), Gaps = 25/197 (12%)
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
P +PG P PG + AP PG P LPG L G LPG A GP
Sbjct: 275 PGIPGTKGHPGAPGIAGAPGAPG-FGKPGLPG------LKGQMGPTGLPGAPGAKGEQGP 327
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ P PG + P GP +PG LPGP GP+ P G P L
Sbjct: 328 AGHPGEPGLTGPPGNMGPQGPKGIPGNHG---LPGPKGEIGPVGPAGNPGARGARGPPGL 384
Query: 201 ---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
PG P L GP P LPGP + G +P LPGP GP A +PG
Sbjct: 385 DGKPGYPGEPGLNGPKGNPGLPGPKGDAGVRG---SPGLPGPV------GPVGAKGVPGH 435
Query: 258 SSAPDLPGPSSAPDLPG 274
GP AP +PG
Sbjct: 436 DGE---AGPRGAPGIPG 449
Score = 38.1 bits (87), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 60/153 (39%), Gaps = 21/153 (13%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P P L G LPG A GP+ P PG + P GP +PG
Sbjct: 300 KPGLPGLKGQMGPTGLPGAPGAKGEQGPAGHPGEPGLTGPPGNMGPQGPKGIPGNHG--- 356
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSS------ 133
LPGP GP+ P G P L PG P L GP P LPGP
Sbjct: 357 LPGPKGEIGPVGPAGNPGARGARGPPGLDGKPGYPGEPGLNGPKGNPGLPGPKGDAGVRG 416
Query: 134 APDLPGPSS---APDLPG------PSSAPDLPG 157
+P LPGP A +PG P AP +PG
Sbjct: 417 SPGLPGPVGPVGAKGVPGHDGEAGPRGAPGIPG 449
>gi|392343399|ref|XP_003754877.1| PREDICTED: collagen alpha-6(IV) chain-like [Rattus norvegicus]
Length = 1690
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 95/267 (35%), Gaps = 25/267 (9%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDL--PGPSSAPDL---PGPSSAPDLP 93
GP+ P L GP L G P + G A D PGP P L PG P LP
Sbjct: 524 GPTGTPGLFGPRGQTGLKGKKGEPTVSRGSKMAGDKGDPGPQGIPGLAGAPGKDGIPGLP 583
Query: 94 G-PSSAPD----LPGPSSAPDLPGPSS--APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
G P + D PG P LPG P P P LPGP P G P
Sbjct: 584 GFPGTQGDDGSGFPGERGLPGLPGEKGHDGPTGPRGIGLPGLPGPRGLPGDKGVDGLPGQ 643
Query: 147 PGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
G A + P P GPS AP PG A LPG P G P PG
Sbjct: 644 QGLRGAKGVTLPCIIPGSYGPSGFPGAPGFPGSKGARGLPGIPGKPGTHGSKGEPGSPGL 703
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSSAPD 262
P PG P G P PG PG + +P +PG A D+ G +
Sbjct: 704 IHLPGFPG---FPGARGEKGLPGFPGLLGKHGYPGKAGSPGVPGSKGVAGDIFGAENGAS 760
Query: 263 LPGPSSAPDLPGPSSAP---DLPGPSS 286
G LPG P LPGP
Sbjct: 761 --GEQGLQGLPGDKGFPGDSGLPGPKG 785
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 79/232 (34%), Gaps = 19/232 (8%)
Query: 39 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--APDLPGPSSAPDLPGPSS--APDLPG 94
PGP P L G AP G P PG PG P LPG P P
Sbjct: 562 PGPQGIPGLAG---APGKDGIPGLPGFPGTQGDDGSGFPGERGLPGLPGEKGHDGPTGPR 618
Query: 95 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSS 151
P LPGP P G P G A + P P GPS AP PG
Sbjct: 619 GIGLPGLPGPRGLPGDKGVDGLPGQQGLRGAKGVTLPCIIPGSYGPSGFPGAPGFPGSKG 678
Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
A LPG P G P PG P PG P G P PG PG
Sbjct: 679 ARGLPGIPGKPGTHGSKGEPGSPGLIHLPGFPG---FPGARGEKGLPGFPGLLGKHGYPG 735
Query: 212 PSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSS 259
+ +P +PG A D+ G + G LPG P LPGP
Sbjct: 736 KAGSPGVPGSKGVAGDIFGAENGAS--GEQGLQGLPGDKGFPGDSGLPGPKG 785
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 95/283 (33%), Gaps = 38/283 (13%)
Query: 36 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDL 92
P LPGP P G P G A + P P GPS AP PG A L
Sbjct: 623 PGLPGPRGLPGDKGVDGLPGQQGLRGAKGVTLPCIIPGSYGPSGFPGAPGFPGSKGARGL 682
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
PG P G P PG P PG P G P PG PG + +
Sbjct: 683 PGIPGKPGTHGSKGEPGSPGLIHLPGFPG---FPGARGEKGLPGFPGLLGKHGYPGKAGS 739
Query: 153 PDLPGPSS-APDL----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
P +PG A D+ G S L G PG S P G S + GP
Sbjct: 740 PGVPGSKGVAGDIFGAENGASGEQGLQGLPGDKGFPGDSGLPGPKGLSGKSGMLGPKGER 799
Query: 208 DLP------------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
P G LPG AP LPG S P G PG +
Sbjct: 800 GNPGTSGPPGQPGPSGSTDPFGIKGTSGLPG---APGLPGISGHPGKKGQRGDIGHPGST 856
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG LPGP L G +P L G + P +PG
Sbjct: 857 GKRGLPG---IKGLPGPQG---LAGFLGSPGLSGVTGLPGIPG 893
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 123/453 (27%), Positives = 153/453 (33%), Gaps = 81/453 (17%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP L GP P LPG LPG PG +S +PGP+ P G P
Sbjct: 1154 RPGPSGLIGPKGFPGLPGLHGLNGLPGTKGTHGTPG-ASITGVPGPAGLPGPKGEKGMPG 1212
Query: 83 L----PGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPG----- 130
+ PG G +P L GP+ P G PS PG P L G
Sbjct: 1213 IVIGDPGKQGLRGQKGDQGSPGLQGPAGTPGASGISLPSVIAGQPGDPGQPGLDGERGRP 1272
Query: 131 ----------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
PSS PG S P +PG L G P G S L G P
Sbjct: 1273 GLPGPPGPPGPSSDQGDPGDSGFPGIPGLQG---LKGNQGLPGFSGLSGDLGLKGMRGEP 1329
Query: 181 DLPG---------PSSAPDLPGPSSAPDLPGPSSAPDL----------PGPSSAPDLPGP 221
L G P + G + GP AP PGP P + G
Sbjct: 1330 GLMGTPGKIGPPGDPGFPGMKGKAGPRGFSGPQGAPGHTPIAEARHVPPGPLGLPGIDGI 1389
Query: 222 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSA 278
PG + L G P +PG LPGPS P LPG P G A
Sbjct: 1390 PGLTGDPGSQGSVGLQGSKGLPGIPGKDGPSGLPGPSGILGDPGLPGLQGPPGFEG---A 1446
Query: 279 PDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKS------PKGLEPKPAQIS--FVLNIFAN 330
P GP P +PG S V G L H +S P G+ S FV
Sbjct: 1447 PGNQGPIGQPGMPGHSVRV-GYTL--VKHSQSEHVPPCPIGMSQLWVGYSLLFVEGQEKA 1503
Query: 331 FHQTLRFLHFSCTSLVVTRATVVKLPLYILTVEDDTVILLFIETFIQLPQQAYTTNSFA- 389
+Q L F SC T +P + + + + + ++Y ++ A
Sbjct: 1504 HNQDLGFAG-SCLPRFST------MPFIYCNINE-------VCHYARRNDKSYWLSTTAP 1549
Query: 390 -PMDPSKDDTVILLFIKTC--IQLPQQAYTTNS 419
PM P +T I +I C + P QA +S
Sbjct: 1550 IPMMPV-GETQIPQYISRCSVCEAPSQAIAVHS 1581
>gi|340730044|ref|XP_003403299.1| PREDICTED: collagen alpha-2(IV) chain-like isoform 1 [Bombus
terrestris]
Length = 894
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 105/310 (33%), Gaps = 46/310 (14%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 80
P E PG +P G S P PGP P +PGP L G + A PG
Sbjct: 420 PGERGFPGQDGSPGSEGRSGLPGFPGPKGEIGFPGVPGPQGLQGLRGEAGALGPPGIQGQ 479
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
G LPG LPGP G LPG P GP P L G
Sbjct: 480 KGEAGEPGRDGLPGSMVGSILPGPPGPEGPRGSPGEDGLPGVKGEPGPVGPPGLPGLQGK 539
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
AP GP + PG P +PGP + G P LPG G
Sbjct: 540 DGAPGSLGPPGSQGSPGLPGEPGVPGPRG---IEGAIGKPGLPGLDGRSAEKGDRGHQGE 596
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS----------------------------- 231
GP LPG AP LPG + P L G
Sbjct: 597 QGPVGPRGLPGSVGAPGLPGVAGIPGLEGRPGPPGAPGPPGPAGPPGTISDMLNTNNILE 656
Query: 232 --SAPDLPGP---SSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPG 283
+P + GP S AP LPG P GP P +PG AP L GP P + G
Sbjct: 657 TIGSPGVSGPRGASGAPGLPGERGPPGERGPEGQMGLPGIPGKDGAPGLQGP---PGIRG 713
Query: 284 PSSAPDLPGP 293
+ P + GP
Sbjct: 714 QTGMPGVQGP 723
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 92/260 (35%), Gaps = 41/260 (15%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P EP +PGP + G P LPG G GP LPG AP L
Sbjct: 558 PGEPGVPGPRG---IEGAIGKPGLPGLDGRSAEKGDRGHQGEQGPVGPRGLPGSVGAPGL 614
Query: 84 PGPSSAPDLPG----------------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 127
PG + P L G P + D+ ++ + G G S AP
Sbjct: 615 PGVAGIPGLEGRPGPPGAPGPPGPAGPPGTISDMLNTNNILETIGSPGVSGPRGASGAPG 674
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-- 185
LPG P GP LPG +PG AP L GP P + G + P + GP
Sbjct: 675 LPGERGPPGERGPEGQMGLPG------IPGKDGAPGLQGP---PGIRGQTGMPGVQGPPG 725
Query: 186 -----SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
S ++ L + L GP P LPG + PG +PG
Sbjct: 726 RSIIESEIREICTSVLREKL--KTLTEGLRGP---PGLPGLARQ-GRPGRIGTQGIPGDP 779
Query: 241 SAPDLPGPSSAPDLPGPSSA 260
P LPG LPGP A
Sbjct: 780 GLPGLPGERGFVGLPGPQGA 799
>gi|392354102|ref|XP_225043.6| PREDICTED: collagen alpha-2(IV) chain [Rattus norvegicus]
Length = 1660
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 92/255 (36%), Gaps = 19/255 (7%)
Query: 46 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 105
DLPG +P L G +PG G PG + + G +P L G +
Sbjct: 1046 DLPG---SPGLKGERGVTGIPGLKGLFGEKGAEGDVGFPGITG---MAGAQGSPGLKGQT 1099
Query: 106 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 165
P L G PG P G P +PG P + G S LPG P P
Sbjct: 1100 GFPGLTGLQGPQGEPGRIGIPGDKGDFGWPGVPGRPGIPGIRGISGLHGLPGTKGFPGSP 1159
Query: 166 GPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--- 220
G + D PGP+ D A LPGP AP G P GP +P L G
Sbjct: 1160 GVDAHGDPGFPGPTG--DRGDRGEANTLPGPVGAPGQKGEQGIPGERGPVGSPGLQGFPG 1217
Query: 221 ---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
PS+ LPG AP + G PGP LPG G S A PG
Sbjct: 1218 ISPPSNISGLPGDVGAPGIFGLQGYQGPPGPPGPNALPGIKGD---EGSSGAAGFPGEKG 1274
Query: 278 APDLPGPSSAPDLPG 292
PGP P + G
Sbjct: 1275 WVGDPGPQGQPGVHG 1289
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 98/277 (35%), Gaps = 29/277 (10%)
Query: 27 PDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPD 82
P +PG S P LPG P G P PG P + GP + P G
Sbjct: 962 PGVPGLSGIPGLPGRPGFIKGAKGDIGVPGTPGLPGFPGVSGPPGITGFPGFTGSRGEKG 1021
Query: 83 LPGPSSAPDLPGPSS-------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
PG + GP+ DLPG G + P L G G P
Sbjct: 1022 TPGVAGVFGETGPTGDFGDIGDTVDLPGSPGLKGERGVTGIPGLKGLFGEKGAEGDVGFP 1081
Query: 136 DLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
+ G + A P L G + P L G PG P G P +PG P +
Sbjct: 1082 GITGMAGAQGSPGLKGQTGFPGLTGLQGPQGEPGRIGIPGDKGDFGWPGVPGRPGIPGIR 1141
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSS-------APDLPGPSSAPDLPGPSSAP 243
G S LPG P PG + D PGP+ A LPGP AP G P
Sbjct: 1142 GISGLHGLPGTKGFPGSPGVDAHGDPGFPGPTGDRGDRGEANTLPGPVGAPGQKGEQGIP 1201
Query: 244 DLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPG 274
GP +P L G PS+ LPG AP + G
Sbjct: 1202 GERGPVGSPGLQGFPGISPPSNISGLPGDVGAPGIFG 1238
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 91/253 (35%), Gaps = 24/253 (9%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
DLPG +P L G +PG G PG + + G +P L G +
Sbjct: 1046 DLPG---SPGLKGERGVTGIPGLKGLFGEKGAEGDVGFPGITG---MAGAQGSPGLKGQT 1099
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
P L G PG P G P +PG P + G S LPG P P
Sbjct: 1100 GFPGLTGLQGPQGEPGRIGIPGDKGDFGWPGVPGRPGIPGIRGISGLHGLPGTKGFPGSP 1159
Query: 148 GPSSAPD--LPGPSS-------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG----- 193
G + D PGP+ A LPGP AP G P GP +P L G
Sbjct: 1160 GVDAHGDPGFPGPTGDRGDRGEANTLPGPVGAPGQKGEQGIPGERGPVGSPGLQGFPGIS 1219
Query: 194 -PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
PS+ LPG AP + G PGP LPG G S A PG
Sbjct: 1220 PPSNISGLPGDVGAPGIFGLQGYQGPPGPPGPNALPGIKGD---EGSSGAAGFPGEKGWV 1276
Query: 253 DLPGPSSAPDLPG 265
PGP P + G
Sbjct: 1277 GDPGPQGQPGVHG 1289
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 100/289 (34%), Gaps = 25/289 (8%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
L E+ E D+ P + G +P L G + P L G PG P
Sbjct: 1065 LKGLFGEKGAEGDVGFPGIT-GMAGAQGSPGLKGQTGFPGLTGLQGPQGEPGRIGIPGDK 1123
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G P +PG P + G S LPG P PG + D P PGP+
Sbjct: 1124 GDFGWPGVPGRPGIPGIRGISGLHGLPGTKGFPGSPGVDAHGD-------PGFPGPTG-- 1174
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAP 189
D A LPGP AP G P GP +P L G PS+ LPG AP
Sbjct: 1175 DRGDRGEANTLPGPVGAPGQKGEQGIPGERGPVGSPGLQGFPGISPPSNISGLPGDVGAP 1234
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
+ G PGP LPG G S A PG PGP P + G
Sbjct: 1235 GIFGLQGYQGPPGPPGPNALPGIKGD---EGSSGAAGFPGEKGWVGDPGPQGQPGVHGLP 1291
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPS------SAPDLPGPSSAPDLPG 292
G GPS A GP P PG +P +PG
Sbjct: 1292 GEKGPKGEQGFMGNTGPSGAVGDRGPKGPKGDQGFPGAPGSMGSPGIPG 1340
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 110/325 (33%), Gaps = 42/325 (12%)
Query: 12 EADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSSAPDLPGPS 69
+ D+ V RP P + G S LPG P PG + D PGP+ D
Sbjct: 1123 KGDFGWPGVPGRPGIPGIRGISGLHGLPGTKGFPGSPGVDAHGDPGFPGPTG--DRGDRG 1180
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPS 123
A LPGP AP G P GP +P L G PS+ LPG AP + G
Sbjct: 1181 EANTLPGPVGAPGQKGEQGIPGERGPVGSPGLQGFPGISPPSNISGLPGDVGAPGIFGLQ 1240
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
PGP LPG G S A PG PGP P + G
Sbjct: 1241 GYQGPPGPPGPNALPGIKGD---EGSSGAAGFPGEKGWVGDPGPQGQPGVHGLPGEKGPK 1297
Query: 184 GPSSAPDLPGPSSAPDLPGPS------SAPDLPGPSSAPDLPG----PSSAPDLPGPSSA 233
G GPS A GP P PG +P +PG + P GP
Sbjct: 1298 GEQGFMGNTGPSGAVGDRGPKGPKGDQGFPGAPGSMGSPGIPGIPQKIAVQPGTMGPQGR 1357
Query: 234 PDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 278
LPG AP GP + S+ P G GP
Sbjct: 1358 RGLPGALGEMGPQGPPGDPGFRGAPGKAGPQGRGGV---SAVPGFRGDQGPMGHQGPIGQ 1414
Query: 279 PDLPGPSSAPDLPG-PSSTVLGSYL 302
PG +P LPG P +V YL
Sbjct: 1415 EGEPGRPGSPGLPGMPGRSVSIGYL 1439
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 81/234 (34%), Gaps = 17/234 (7%)
Query: 65 LPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 123
L G P +PG S P LPG P G P PG P + GP PG +
Sbjct: 955 LKGIQGMPGVPGLSGIPGLPGRPGFIKGAKGDIGVPGTPGLPGFPGVSGP------PGIT 1008
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
P G PG + GP+ D DLPG +P L G +P
Sbjct: 1009 GFPGFTGSRGEKGTPGVAGVFGETGPTG--DFGDIGDTVDLPG---SPGLKGERGVTGIP 1063
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
G G PG + + G +P L G + P L G PG P
Sbjct: 1064 GLKGLFGEKGAEGDVGFPGITG---MAGAQGSPGLKGQTGFPGLTGLQGPQGEPGRIGIP 1120
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSS 295
G P +PG P + G S LPG P PG + D PGP+
Sbjct: 1121 GDKGDFGWPGVPGRPGIPGIRGISGLHGLPGTKGFPGSPGVDAHGDPGFPGPTG 1174
>gi|350416747|ref|XP_003491083.1| PREDICTED: collagen alpha-1(XXIV) chain-like isoform 2 [Bombus
impatiens]
Length = 892
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 107/313 (34%), Gaps = 52/313 (16%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 80
P E PG +P G S P PGP P +PGP L G + A PG
Sbjct: 418 PGERGSPGQDGSPGSEGRSGLPGFPGPKGEIGFPGVPGPQGLQGLRGEAGAQGSPGIQGQ 477
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
G LPG LPGP PG LPG P GP P L G
Sbjct: 478 KGEAGEPGRDGLPGSMVGSILPGPPGPEGPPGSPGEDGLPGVKGEPGPVGPPGLPGLQGK 537
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSA 197
AP GP PG +P LPG AP + G P LPG G
Sbjct: 538 DGAPGSLGP------PGLQGSPGLPGEPGAPGPRGIEGAIGKPGLPGLDGRSAEKGDRGQ 591
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-------------------------- 231
GP LPG AP LPG + P L G
Sbjct: 592 QGEQGPVGPRGLPGSVGAPGLPGVAGIPGLEGRPGPPGAPGPPGPAGPPGTISDMLSTNN 651
Query: 232 -----SAPDLPGP---SSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPD 280
+P + GP S AP LPG P GP P +PG AP L GP P
Sbjct: 652 VLETIGSPGVSGPRGASGAPGLPGERGPPGERGPEGQMGLPGMPGKDGAPGLQGP---PG 708
Query: 281 LPGPSSAPDLPGP 293
+ G + P + GP
Sbjct: 709 IRGQTGMPGVQGP 721
>gi|350416745|ref|XP_003491082.1| PREDICTED: collagen alpha-1(XXIV) chain-like isoform 1 [Bombus
impatiens]
Length = 894
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 107/313 (34%), Gaps = 52/313 (16%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 80
P E PG +P G S P PGP P +PGP L G + A PG
Sbjct: 420 PGERGSPGQDGSPGSEGRSGLPGFPGPKGEIGFPGVPGPQGLQGLRGEAGAQGSPGIQGQ 479
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
G LPG LPGP PG LPG P GP P L G
Sbjct: 480 KGEAGEPGRDGLPGSMVGSILPGPPGPEGPPGSPGEDGLPGVKGEPGPVGPPGLPGLQGK 539
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSA 197
AP GP PG +P LPG AP + G P LPG G
Sbjct: 540 DGAPGSLGP------PGLQGSPGLPGEPGAPGPRGIEGAIGKPGLPGLDGRSAEKGDRGQ 593
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-------------------------- 231
GP LPG AP LPG + P L G
Sbjct: 594 QGEQGPVGPRGLPGSVGAPGLPGVAGIPGLEGRPGPPGAPGPPGPAGPPGTISDMLSTNN 653
Query: 232 -----SAPDLPGP---SSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPD 280
+P + GP S AP LPG P GP P +PG AP L GP P
Sbjct: 654 VLETIGSPGVSGPRGASGAPGLPGERGPPGERGPEGQMGLPGMPGKDGAPGLQGP---PG 710
Query: 281 LPGPSSAPDLPGP 293
+ G + P + GP
Sbjct: 711 IRGQTGMPGVQGP 723
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 109/311 (35%), Gaps = 61/311 (19%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPG 94
L G AP GP PG +P LPG AP + G P LPG G
Sbjct: 536 LQGKDGAPGSLGP------PGLQGSPGLPGEPGAPGPRGIEGAIGKPGLPGLDGRSAEKG 589
Query: 95 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---------------------- 132
GP LPG AP LPG + P L G
Sbjct: 590 DRGQQGEQGPVGPRGLPGSVGAPGLPGVAGIPGLEGRPGPPGAPGPPGPAGPPGTISDML 649
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
S ++ +P + GP A S AP LPG P GP LPG +P
Sbjct: 650 STNNVLETIGSPGVSGPRGA------SGAPGLPGERGPPGERGPEGQMGLPG------MP 697
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-------SSAPDLPGPSSAPDLPGPSSAPDL 245
G AP L GP P + G + P + GP S ++ L + L
Sbjct: 698 GKDGAPGLQGP---PGIRGQTGMPGVQGPPGRSIIESEIREICTSVLRERLK--TLTEGL 752
Query: 246 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV-LGSYLGE 304
GP P LPG + PG +PG P LPG LPGP + L GE
Sbjct: 753 RGP---PGLPGLARQ-GRPGRIGTQGIPGDPGLPGLPGERGFVGLPGPQGAIGLQGSPGE 808
Query: 305 AGHQKSPKGLE 315
G +K KG E
Sbjct: 809 RG-EKGDKGQE 818
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 93/271 (34%), Gaps = 53/271 (19%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P EP PGP + G P LPG G GP LPG AP L
Sbjct: 558 PGEPGAPGPRG---IEGAIGKPGLPGLDGRSAEKGDRGQQGEQGPVGPRGLPGSVGAPGL 614
Query: 84 PGPSSAPDLPGPS----------------------SAPDLPGPSSAPDLPGPSSAPDLPG 121
PG + P L G S ++ +P + GP A
Sbjct: 615 PGVAGIPGLEGRPGPPGAPGPPGPAGPPGTISDMLSTNNVLETIGSPGVSGPRGA----- 669
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
S AP LPG P GP LPG +PG AP L GP P + G + P
Sbjct: 670 -SGAPGLPGERGPPGERGPEGQMGLPG------MPGKDGAPGLQGP---PGIRGQTGMPG 719
Query: 182 LPGP-------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
+ GP S ++ L + L GP P LPG + PG
Sbjct: 720 VQGPPGRSIIESEIREICTSVLRERL--KTLTEGLRGP---PGLPGLARQ-GRPGRIGTQ 773
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
+PG P LPG LPGP A L G
Sbjct: 774 GIPGDPGLPGLPGERGFVGLPGPQGAIGLQG 804
>gi|426234501|ref|XP_004011234.1| PREDICTED: collagen alpha-1(X) chain [Ovis aries]
Length = 674
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 80/207 (38%), Gaps = 25/207 (12%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P PG P +PG P PG + P PG P LPG GP P PG
Sbjct: 265 KPGAPGTPGQPGVPGMKGHPGAPGIAGLPGAPG-FGKPGLPGLKGQ---RGPVGLPGSPG 320
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
G LPGPS GP P PG LPGP GP+ P
Sbjct: 321 AKGEQGPAGHPGGAGLPGPSGNMGPQGPKGIPGDPG------LPGPKGEMGPVGPAGNPG 374
Query: 146 LPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
G + L PG P L GP P LPGP P + G +P LPGP G
Sbjct: 375 AKGERGSSGLDGKPGYPGEPGLNGPKGNPGLPGPKGDPGIAG---SPGLPGPV------G 425
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPG 229
P+ A +PG + GP P +PG
Sbjct: 426 PAGAKGVPGHNGE---AGPRGVPGIPG 449
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 79/208 (37%), Gaps = 25/208 (12%)
Query: 52 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 111
P PG P +PG P PG + P PG P LPG GP P P
Sbjct: 264 GKPGAPGTPGQPGVPGMKGHPGAPGIAGLPGAPG-FGKPGLPGLKGQR---GPVGLPGSP 319
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
G G LPGPS GP P PG LPGP GP+ P
Sbjct: 320 GAKGEQGPAGHPGGAGLPGPSGNMGPQGPKGIPGDPG------LPGPKGEMGPVGPAGNP 373
Query: 172 DLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
G + L PG P L GP P LPGP P + G +P LPGP
Sbjct: 374 GAKGERGSSGLDGKPGYPGEPGLNGPKGNPGLPGPKGDPGIAG---SPGLPGPV------ 424
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
GP+ A +PG + GP P +PG
Sbjct: 425 GPAGAKGVPGHNGE---AGPRGVPGIPG 449
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 73/191 (38%), Gaps = 34/191 (17%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGP 77
P +P +PG P PG + P PG P LPG P P PG G
Sbjct: 272 PGQPGVPGMKGHPGAPGIAGLPGAPG-FGKPGLPGLKGQRGPVGLPGSPGAKGEQGPAGH 330
Query: 78 SSAPDLPGPSSA------------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGP 122
LPGPS P LPGP GP+ P G + L PG
Sbjct: 331 PGGAGLPGPSGNMGPQGPKGIPGDPGLPGPKGEMGPVGPAGNPGAKGERGSSGLDGKPGY 390
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
P L GP P LPGP P + G +P LPGP GP+ A +PG +
Sbjct: 391 PGEPGLNGPKGNPGLPGPKGDPGIAG---SPGLPGPV------GPAGAKGVPGHNGE--- 438
Query: 183 PGPSSAPDLPG 193
GP P +PG
Sbjct: 439 AGPRGVPGIPG 449
>gi|392333710|ref|XP_001076134.3| PREDICTED: collagen alpha-2(IV) chain [Rattus norvegicus]
Length = 1708
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 92/255 (36%), Gaps = 19/255 (7%)
Query: 46 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 105
DLPG +P L G +PG G PG + + G +P L G +
Sbjct: 1094 DLPG---SPGLKGERGVTGIPGLKGLFGEKGAEGDVGFPGITG---MAGAQGSPGLKGQT 1147
Query: 106 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 165
P L G PG P G P +PG P + G S LPG P P
Sbjct: 1148 GFPGLTGLQGPQGEPGRIGIPGDKGDFGWPGVPGRPGIPGIRGISGLHGLPGTKGFPGSP 1207
Query: 166 GPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--- 220
G + D PGP+ D A LPGP AP G P GP +P L G
Sbjct: 1208 GVDAHGDPGFPGPTG--DRGDRGEANTLPGPVGAPGQKGEQGIPGERGPVGSPGLQGFPG 1265
Query: 221 ---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
PS+ LPG AP + G PGP LPG G S A PG
Sbjct: 1266 ISPPSNISGLPGDVGAPGIFGLQGYQGPPGPPGPNALPGIKGD---EGSSGAAGFPGEKG 1322
Query: 278 APDLPGPSSAPDLPG 292
PGP P + G
Sbjct: 1323 WVGDPGPQGQPGVHG 1337
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 98/277 (35%), Gaps = 29/277 (10%)
Query: 27 PDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPD 82
P +PG S P LPG P G P PG P + GP + P G
Sbjct: 1010 PGVPGLSGIPGLPGRPGFIKGAKGDIGVPGTPGLPGFPGVSGPPGITGFPGFTGSRGEKG 1069
Query: 83 LPGPSSAPDLPGPSS-------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
PG + GP+ DLPG G + P L G G P
Sbjct: 1070 TPGVAGVFGETGPTGDFGDIGDTVDLPGSPGLKGERGVTGIPGLKGLFGEKGAEGDVGFP 1129
Query: 136 DLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
+ G + A P L G + P L G PG P G P +PG P +
Sbjct: 1130 GITGMAGAQGSPGLKGQTGFPGLTGLQGPQGEPGRIGIPGDKGDFGWPGVPGRPGIPGIR 1189
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSS-------APDLPGPSSAPDLPGPSSAP 243
G S LPG P PG + D PGP+ A LPGP AP G P
Sbjct: 1190 GISGLHGLPGTKGFPGSPGVDAHGDPGFPGPTGDRGDRGEANTLPGPVGAPGQKGEQGIP 1249
Query: 244 DLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPG 274
GP +P L G PS+ LPG AP + G
Sbjct: 1250 GERGPVGSPGLQGFPGISPPSNISGLPGDVGAPGIFG 1286
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 91/253 (35%), Gaps = 24/253 (9%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
DLPG +P L G +PG G PG + + G +P L G +
Sbjct: 1094 DLPG---SPGLKGERGVTGIPGLKGLFGEKGAEGDVGFPGITG---MAGAQGSPGLKGQT 1147
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
P L G PG P G P +PG P + G S LPG P P
Sbjct: 1148 GFPGLTGLQGPQGEPGRIGIPGDKGDFGWPGVPGRPGIPGIRGISGLHGLPGTKGFPGSP 1207
Query: 148 GPSSAPD--LPGPSS-------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG----- 193
G + D PGP+ A LPGP AP G P GP +P L G
Sbjct: 1208 GVDAHGDPGFPGPTGDRGDRGEANTLPGPVGAPGQKGEQGIPGERGPVGSPGLQGFPGIS 1267
Query: 194 -PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
PS+ LPG AP + G PGP LPG G S A PG
Sbjct: 1268 PPSNISGLPGDVGAPGIFGLQGYQGPPGPPGPNALPGIKGD---EGSSGAAGFPGEKGWV 1324
Query: 253 DLPGPSSAPDLPG 265
PGP P + G
Sbjct: 1325 GDPGPQGQPGVHG 1337
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 100/289 (34%), Gaps = 25/289 (8%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
L E+ E D+ P + G +P L G + P L G PG P
Sbjct: 1113 LKGLFGEKGAEGDVGFPGIT-GMAGAQGSPGLKGQTGFPGLTGLQGPQGEPGRIGIPGDK 1171
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G P +PG P + G S LPG P PG + D P PGP+
Sbjct: 1172 GDFGWPGVPGRPGIPGIRGISGLHGLPGTKGFPGSPGVDAHGD-------PGFPGPTG-- 1222
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAP 189
D A LPGP AP G P GP +P L G PS+ LPG AP
Sbjct: 1223 DRGDRGEANTLPGPVGAPGQKGEQGIPGERGPVGSPGLQGFPGISPPSNISGLPGDVGAP 1282
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
+ G PGP LPG G S A PG PGP P + G
Sbjct: 1283 GIFGLQGYQGPPGPPGPNALPGIKGD---EGSSGAAGFPGEKGWVGDPGPQGQPGVHGLP 1339
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPS------SAPDLPGPSSAPDLPG 292
G GPS A GP P PG +P +PG
Sbjct: 1340 GEKGPKGEQGFMGNTGPSGAVGDRGPKGPKGDQGFPGAPGSMGSPGIPG 1388
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 110/325 (33%), Gaps = 42/325 (12%)
Query: 12 EADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSSAPDLPGPS 69
+ D+ V RP P + G S LPG P PG + D PGP+ D
Sbjct: 1171 KGDFGWPGVPGRPGIPGIRGISGLHGLPGTKGFPGSPGVDAHGDPGFPGPTG--DRGDRG 1228
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPS 123
A LPGP AP G P GP +P L G PS+ LPG AP + G
Sbjct: 1229 EANTLPGPVGAPGQKGEQGIPGERGPVGSPGLQGFPGISPPSNISGLPGDVGAPGIFGLQ 1288
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
PGP LPG G S A PG PGP P + G
Sbjct: 1289 GYQGPPGPPGPNALPGIKGD---EGSSGAAGFPGEKGWVGDPGPQGQPGVHGLPGEKGPK 1345
Query: 184 GPSSAPDLPGPSSAPDLPGPS------SAPDLPGPSSAPDLPG----PSSAPDLPGPSSA 233
G GPS A GP P PG +P +PG + P GP
Sbjct: 1346 GEQGFMGNTGPSGAVGDRGPKGPKGDQGFPGAPGSMGSPGIPGIPQKIAVQPGTMGPQGR 1405
Query: 234 PDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 278
LPG AP GP + S+ P G GP
Sbjct: 1406 RGLPGALGEMGPQGPPGDPGFRGAPGKAGPQGRGGV---SAVPGFRGDQGPMGHQGPIGQ 1462
Query: 279 PDLPGPSSAPDLPG-PSSTVLGSYL 302
PG +P LPG P +V YL
Sbjct: 1463 EGEPGRPGSPGLPGMPGRSVSIGYL 1487
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 81/234 (34%), Gaps = 17/234 (7%)
Query: 65 LPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 123
L G P +PG S P LPG P G P PG P + GP PG +
Sbjct: 1003 LKGIQGMPGVPGLSGIPGLPGRPGFIKGAKGDIGVPGTPGLPGFPGVSGP------PGIT 1056
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
P G PG + GP+ D DLPG +P L G +P
Sbjct: 1057 GFPGFTGSRGEKGTPGVAGVFGETGPTG--DFGDIGDTVDLPG---SPGLKGERGVTGIP 1111
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
G G PG + + G +P L G + P L G PG P
Sbjct: 1112 GLKGLFGEKGAEGDVGFPGITG---MAGAQGSPGLKGQTGFPGLTGLQGPQGEPGRIGIP 1168
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSS 295
G P +PG P + G S LPG P PG + D PGP+
Sbjct: 1169 GDKGDFGWPGVPGRPGIPGIRGISGLHGLPGTKGFPGSPGVDAHGDPGFPGPTG 1222
>gi|149057578|gb|EDM08821.1| procollagen, type IV, alpha 2 (predicted) [Rattus norvegicus]
Length = 1695
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 92/255 (36%), Gaps = 19/255 (7%)
Query: 46 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 105
DLPG +P L G +PG G PG + + G +P L G +
Sbjct: 1081 DLPG---SPGLKGERGVTGIPGLKGLFGEKGAEGDVGFPGITG---MAGAQGSPGLKGQT 1134
Query: 106 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 165
P L G PG P G P +PG P + G S LPG P P
Sbjct: 1135 GFPGLTGLQGPQGEPGRIGIPGDKGDFGWPGVPGRPGIPGIRGISGLHGLPGTKGFPGSP 1194
Query: 166 GPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--- 220
G + D PGP+ D A LPGP AP G P GP +P L G
Sbjct: 1195 GVDAHGDPGFPGPTG--DRGDRGEANTLPGPVGAPGQKGEQGIPGERGPVGSPGLQGFPG 1252
Query: 221 ---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
PS+ LPG AP + G PGP LPG G S A PG
Sbjct: 1253 ISPPSNISGLPGDVGAPGIFGLQGYQGPPGPPGPNALPGIKGD---EGSSGAAGFPGEKG 1309
Query: 278 APDLPGPSSAPDLPG 292
PGP P + G
Sbjct: 1310 WVGDPGPQGQPGVHG 1324
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 98/277 (35%), Gaps = 29/277 (10%)
Query: 27 PDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPD 82
P +PG S P LPG P G P PG P + GP + P G
Sbjct: 997 PGVPGLSGIPGLPGRPGFIKGAKGDIGVPGTPGLPGFPGVSGPPGITGFPGFTGSRGEKG 1056
Query: 83 LPGPSSAPDLPGPSS-------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
PG + GP+ DLPG G + P L G G P
Sbjct: 1057 TPGVAGVFGETGPTGDFGDIGDTVDLPGSPGLKGERGVTGIPGLKGLFGEKGAEGDVGFP 1116
Query: 136 DLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
+ G + A P L G + P L G PG P G P +PG P +
Sbjct: 1117 GITGMAGAQGSPGLKGQTGFPGLTGLQGPQGEPGRIGIPGDKGDFGWPGVPGRPGIPGIR 1176
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSS-------APDLPGPSSAPDLPGPSSAP 243
G S LPG P PG + D PGP+ A LPGP AP G P
Sbjct: 1177 GISGLHGLPGTKGFPGSPGVDAHGDPGFPGPTGDRGDRGEANTLPGPVGAPGQKGEQGIP 1236
Query: 244 DLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPG 274
GP +P L G PS+ LPG AP + G
Sbjct: 1237 GERGPVGSPGLQGFPGISPPSNISGLPGDVGAPGIFG 1273
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 91/253 (35%), Gaps = 24/253 (9%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
DLPG +P L G +PG G PG + + G +P L G +
Sbjct: 1081 DLPG---SPGLKGERGVTGIPGLKGLFGEKGAEGDVGFPGITG---MAGAQGSPGLKGQT 1134
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
P L G PG P G P +PG P + G S LPG P P
Sbjct: 1135 GFPGLTGLQGPQGEPGRIGIPGDKGDFGWPGVPGRPGIPGIRGISGLHGLPGTKGFPGSP 1194
Query: 148 GPSSAPD--LPGPSS-------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG----- 193
G + D PGP+ A LPGP AP G P GP +P L G
Sbjct: 1195 GVDAHGDPGFPGPTGDRGDRGEANTLPGPVGAPGQKGEQGIPGERGPVGSPGLQGFPGIS 1254
Query: 194 -PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
PS+ LPG AP + G PGP LPG G S A PG
Sbjct: 1255 PPSNISGLPGDVGAPGIFGLQGYQGPPGPPGPNALPGIKGD---EGSSGAAGFPGEKGWV 1311
Query: 253 DLPGPSSAPDLPG 265
PGP P + G
Sbjct: 1312 GDPGPQGQPGVHG 1324
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 100/289 (34%), Gaps = 25/289 (8%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
L E+ E D+ P + G +P L G + P L G PG P
Sbjct: 1100 LKGLFGEKGAEGDVGFPGIT-GMAGAQGSPGLKGQTGFPGLTGLQGPQGEPGRIGIPGDK 1158
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G P +PG P + G S LPG P PG + D P PGP+
Sbjct: 1159 GDFGWPGVPGRPGIPGIRGISGLHGLPGTKGFPGSPGVDAHGD-------PGFPGPTG-- 1209
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAP 189
D A LPGP AP G P GP +P L G PS+ LPG AP
Sbjct: 1210 DRGDRGEANTLPGPVGAPGQKGEQGIPGERGPVGSPGLQGFPGISPPSNISGLPGDVGAP 1269
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
+ G PGP LPG G S A PG PGP P + G
Sbjct: 1270 GIFGLQGYQGPPGPPGPNALPGIKGD---EGSSGAAGFPGEKGWVGDPGPQGQPGVHGLP 1326
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPS------SAPDLPGPSSAPDLPG 292
G GPS A GP P PG +P +PG
Sbjct: 1327 GEKGPKGEQGFMGNTGPSGAVGDRGPKGPKGDQGFPGAPGSMGSPGIPG 1375
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 110/325 (33%), Gaps = 42/325 (12%)
Query: 12 EADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSSAPDLPGPS 69
+ D+ V RP P + G S LPG P PG + D PGP+ D
Sbjct: 1158 KGDFGWPGVPGRPGIPGIRGISGLHGLPGTKGFPGSPGVDAHGDPGFPGPTG--DRGDRG 1215
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPS 123
A LPGP AP G P GP +P L G PS+ LPG AP + G
Sbjct: 1216 EANTLPGPVGAPGQKGEQGIPGERGPVGSPGLQGFPGISPPSNISGLPGDVGAPGIFGLQ 1275
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
PGP LPG G S A PG PGP P + G
Sbjct: 1276 GYQGPPGPPGPNALPGIKGD---EGSSGAAGFPGEKGWVGDPGPQGQPGVHGLPGEKGPK 1332
Query: 184 GPSSAPDLPGPSSAPDLPGPS------SAPDLPGPSSAPDLPG----PSSAPDLPGPSSA 233
G GPS A GP P PG +P +PG + P GP
Sbjct: 1333 GEQGFMGNTGPSGAVGDRGPKGPKGDQGFPGAPGSMGSPGIPGIPQKIAVQPGTMGPQGR 1392
Query: 234 PDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 278
LPG AP GP + S+ P G GP
Sbjct: 1393 RGLPGALGEMGPQGPPGDPGFRGAPGKAGPQGRGGV---SAVPGFRGDQGPMGHQGPIGQ 1449
Query: 279 PDLPGPSSAPDLPG-PSSTVLGSYL 302
PG +P LPG P +V YL
Sbjct: 1450 EGEPGRPGSPGLPGMPGRSVSIGYL 1474
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 81/234 (34%), Gaps = 17/234 (7%)
Query: 65 LPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 123
L G P +PG S P LPG P G P PG P + GP PG +
Sbjct: 990 LKGIQGMPGVPGLSGIPGLPGRPGFIKGAKGDIGVPGTPGLPGFPGVSGP------PGIT 1043
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
P G PG + GP+ D DLPG +P L G +P
Sbjct: 1044 GFPGFTGSRGEKGTPGVAGVFGETGPTG--DFGDIGDTVDLPG---SPGLKGERGVTGIP 1098
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
G G PG + + G +P L G + P L G PG P
Sbjct: 1099 GLKGLFGEKGAEGDVGFPGITG---MAGAQGSPGLKGQTGFPGLTGLQGPQGEPGRIGIP 1155
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSS 295
G P +PG P + G S LPG P PG + D PGP+
Sbjct: 1156 GDKGDFGWPGVPGRPGIPGIRGISGLHGLPGTKGFPGSPGVDAHGDPGFPGPTG 1209
>gi|391341640|ref|XP_003745135.1| PREDICTED: collagen alpha-1(II) chain-like [Metaseiulus
occidentalis]
Length = 1484
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 85/263 (32%), Gaps = 30/263 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P PGP L G +P +PGP PG GP GP PGP
Sbjct: 427 PGFPGPRGPQGLAG---SPGVPGPKGVAGNPGDQGHKGDSGPKGEAGALGPRG---FPGP 480
Query: 87 SSAPDLPGPSSAP------------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
G + A PGP LPGP P G GP
Sbjct: 481 QGVAGKRGKTGAQGPPGPIGPQGERGTPGPRG---LPGPDGLPGQKGEQGIAGSLGPMGP 537
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDL 191
G + P LPG PG P LPG P LPG PG L
Sbjct: 538 KGSTGDNGKPGLPGLQGLRGTPG---LPGLPGKDGVPGVRGLPGADGKTGEPGQQGLQGL 594
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
PGP+ P + G P L G A GP GP LPG P L GP
Sbjct: 595 PGPTGLPGMKGEQGEPGLDGKPGAQGPQGPRGDTGKEGPMGMVGLPGKPGEPGLRGP--- 651
Query: 252 PDLPGPSSAPDLPGPSSAPDLPG 274
P L G LPG P PG
Sbjct: 652 PGLQGSRGFQGLPGIVGNPGAPG 674
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 87/262 (33%), Gaps = 18/262 (6%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
G + P PGP L G +P +PGP PG GP GP
Sbjct: 422 GAAGIPGFPGPRGPQGLAG---SPGVPGPKGVAGNPGDQGHKGDSGPKGEAGALGPRG-- 476
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
PGP G + A PGP G LPGP P G GP
Sbjct: 477 -FPGPQGVAGKRGKTGAQGPPGPIGPQGERGTPGPRGLPGPDGLPGQKGEQGIAGSLGPM 535
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
G + P LPG PG P LPG P + G LPG P
Sbjct: 536 GPKGSTGDNGKPGLPGLQGLRGTPG---LPGLPGKDGVPGVRG------LPGADGKTGEP 586
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
G LPGP+ P + G P L G A GP GP LPG P
Sbjct: 587 GQQGLQGLPGPTGLPGMKGEQGEPGLDGKPGAQGPQGPRGDTGKEGPMGMVGLPGKPGEP 646
Query: 271 DLPGPSSAPDLPGPSSAPDLPG 292
L GP P L G LPG
Sbjct: 647 GLRGP---PGLQGSRGFQGLPG 665
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 93/275 (33%), Gaps = 27/275 (9%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E PGP LPGP P G GP G + P LPG L G
Sbjct: 504 ERGTPGPRG---LPGPDGLPGQKGEQGIAGSLGPMGPKGSTGDNGKPGLPG------LQG 554
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P LPG LPG P + G LPG PG LPGP+ P
Sbjct: 555 LRGTPGLPG------LPGKDGVPGVRG------LPGADGKTGEPGQQGLQGLPGPTGLPG 602
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
+ G P L G A GP GP LPG P L GP P L G
Sbjct: 603 MKGEQGEPGLDGKPGAQGPQGPRGDTGKEGPMGMVGLPGKPGEPGLRGP---PGLQGSRG 659
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
LPG P PG P + GP AP G G + + GP PG
Sbjct: 660 FQGLPGIVGNPGAPGKDGGPGVQGPPGAPGATGSRGERGFQGETGKQGIQGPPGERGDPG 719
Query: 266 PS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
P+ A + G A GP LPG +
Sbjct: 720 PAGQDGARGVTGEKGAKGHQGPPGLVGLPGRRGDI 754
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 93/284 (32%), Gaps = 30/284 (10%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---- 86
GP + L GP +PG + P GP PG + G + P PGP
Sbjct: 377 GPKGSAGLQGPRGESGIPGSTGEPGPTGPPGKDGAPGDKGSRGDSGAAGIPGFPGPRGPQ 436
Query: 87 --SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
+ +P +PGP PG GP GP PGP G + A
Sbjct: 437 GLAGSPGVPGPKGVAGNPGDQGHKGDSGPKGEAGALGPRG---FPGPQGVAGKRGKTGAQ 493
Query: 145 ------------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
PGP LPGP P G GP G + P LP
Sbjct: 494 GPPGPIGPQGERGTPGPRG---LPGPDGLPGQKGEQGIAGSLGPMGPKGSTGDNGKPGLP 550
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
G PG P LPG P LPG PG LPGP+ P + G
Sbjct: 551 GLQGLRGTPG---LPGLPGKDGVPGVRGLPGADGKTGEPGQQGLQGLPGPTGLPGMKGEQ 607
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
P L G A GP GP LPG P L GP
Sbjct: 608 GEPGLDGKPGAQGPQGPRGDTGKEGPMGMVGLPGKPGEPGLRGP 651
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 82/240 (34%), Gaps = 18/240 (7%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
LPGP P G GP G + P LPG PG P LPG
Sbjct: 513 LPGPDGLPGQKGEQGIAGSLGPMGPKGSTGDNGKPGLPGLQGLRGTPG---LPGLPGKDG 569
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
P + G LPG PG LPGP+ P + G P L G A G
Sbjct: 570 VPGVRG------LPGADGKTGEPGQQGLQGLPGPTGLPGMKGEQGEPGLDGKPGAQGPQG 623
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
P GP LPG P L GP P L G LPG P PG P
Sbjct: 624 PRGDTGKEGPMGMVGLPGKPGEPGLRGP---PGLQGSRGFQGLPGIVGNPGAPGKDGGPG 680
Query: 254 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST-----VLGSYLGEAGHQ 308
+ GP AP G G + + GP PGP+ V G G GHQ
Sbjct: 681 VQGPPGAPGATGSRGERGFQGETGKQGIQGPPGERGDPGPAGQDGARGVTGEK-GAKGHQ 739
>gi|348517851|ref|XP_003446446.1| PREDICTED: collagen alpha-1(I) chain-like isoform 1 [Oreochromis
niloticus]
gi|359804080|dbj|BAL40987.1| collagen type I alpha 1 [Oreochromis niloticus]
Length = 1447
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 79/213 (37%), Gaps = 18/213 (8%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
GP+ +P G LPGP A G +PG + AP G PG AP
Sbjct: 619 GPAGSPGFQG------LPGPQGAVGETGKPGEQGVPGEAGAPGPAGARGDRGFPGERGAP 672
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 159
GP+ A PG S G + AP PG P L G +PG A LPG
Sbjct: 673 GAIGPAGARGSPGASGNDGAKGDAGAPGTPGAQGPPGLQG------MPGERGAAGLPGLR 726
Query: 160 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
GP A PG L GP LPGP+ +P G A GPS A P
Sbjct: 727 GNRGDQGPKGADGTPGKDGPRGLTGPIG---LPGPAGSPGDKGEPGAQGPVGPSGARGPP 783
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
G PGP+ GP A PG P
Sbjct: 784 GERGEAGPPGPAG---FAGPPGADGQPGAKGEP 813
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 77/208 (37%), Gaps = 15/208 (7%)
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
GP+ +P G LPGP A G +PG + AP G PG AP
Sbjct: 619 GPAGSPGFQG------LPGPQGAVGETGKPGEQGVPGEAGAPGPAGARGDRGFPGERGAP 672
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
GP+ A PG S G + AP PG P L G +PG A LPG
Sbjct: 673 GAIGPAGARGSPGASGNDGAKGDAGAPGTPGAQGPPGLQG------MPGERGAAGLPGLR 726
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
GP A PG L GP LPGP+ +P G A GPS A P
Sbjct: 727 GNRGDQGPKGADGTPGKDGPRGLTGPIG---LPGPAGSPGDKGEPGAQGPVGPSGARGPP 783
Query: 265 GPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G PGP+ PG P G
Sbjct: 784 GERGEAGPPGPAGFAGPPGADGQPGAKG 811
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 73/197 (37%), Gaps = 12/197 (6%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPGP A G +PG + AP G PG AP GP+ A PG S
Sbjct: 629 LPGPQGAVGETGKPGEQGVPGEAGAPGPAGARGDRGFPGERGAPGAIGPAGARGSPGASG 688
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
G + AP PG P L G +PG A LPG GP A PG
Sbjct: 689 NDGAKGDAGAPGTPGAQGPPGLQG------MPGERGAAGLPGLRGNRGDQGPKGADGTPG 742
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
L GP LPGP+ +P G A GPS A PG PGP+
Sbjct: 743 KDGPRGLTGPIG---LPGPAGSPGDKGEPGAQGPVGPSGARGPPGERGEAGPPGPAG--- 796
Query: 209 LPGPSSAPDLPGPSSAP 225
GP A PG P
Sbjct: 797 FAGPPGADGQPGAKGEP 813
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 71/187 (37%), Gaps = 12/187 (6%)
Query: 21 TERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
T +P E +PG + AP G PG AP GP+ A PG S G + A
Sbjct: 639 TGKPGEQGVPGEAGAPGPAGARGDRGFPGERGAPGAIGPAGARGSPGASGNDGAKGDAGA 698
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
P PG P L G +PG A LPG GP A PG L GP
Sbjct: 699 PGTPGAQGPPGLQG------MPGERGAAGLPGLRGNRGDQGPKGADGTPGKDGPRGLTGP 752
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
LPGP+ +P G A GPS A PG PGP+ GP A
Sbjct: 753 IG---LPGPAGSPGDKGEPGAQGPVGPSGARGPPGERGEAGPPGPAG---FAGPPGADGQ 806
Query: 201 PGPSSAP 207
PG P
Sbjct: 807 PGAKGEP 813
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 101/298 (33%), Gaps = 48/298 (16%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG P GP+ G AP L GP A PG + P LPG PG
Sbjct: 474 PGGRGFPGSDGPAGPKGATGERGAPGLVGPKGATGEPGRTGEPGLPGAKGMTGSPGNPGP 533
Query: 90 PDLPGPSSAP---------------------DLPGPSSA---PDLPGPSSAPDLPGPSSA 125
GPS AP PGP A PG GP+ A
Sbjct: 534 DGKIGPSGAPGQDGRPGPPGPGGARGQPGVMGFPGPKGAAGEAGKPGERGTMGPTGPAGA 593
Query: 126 PDLPG------------PSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSA 170
P G P+ GP+ +P LPGP A G +PG + A
Sbjct: 594 PGKDGDVGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPQGAVGETGKPGEQGVPGEAGA 653
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
P G PG AP GP+ A PG S G + AP PG P L G
Sbjct: 654 PGPAGARGDRGFPGERGAPGAIGPAGARGSPGASGNDGAKGDAGAPGTPGAQGPPGLQG- 712
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
+PG A LPG GP A PG L GP LPGP+ +P
Sbjct: 713 -----MPGERGAAGLPGLRGNRGDQGPKGADGTPGKDGPRGLTGPIG---LPGPAGSP 762
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 98/272 (36%), Gaps = 18/272 (6%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E GP+ +P G LPGP A G +PG + AP G PG
Sbjct: 614 ERGEQGPAGSPGFQG------LPGPQGAVGETGKPGEQGVPGEAGAPGPAGARGDRGFPG 667
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
AP GP+ A PG S G + AP PG P L G +PG A
Sbjct: 668 ERGAPGAIGPAGARGSPGASGNDGAKGDAGAPGTPGAQGPPGLQG------MPGERGAAG 721
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
LPG GP A PG L GP LPGP+ +P G A GPS
Sbjct: 722 LPGLRGNRGDQGPKGADGTPGKDGPRGLTGPIG---LPGPAGSPGDKGEPGAQGPVGPSG 778
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
A PG PGP+ PG P G G S P GP+ AP G
Sbjct: 779 ARGPPGERGEAGPPGPAGFAGPPGADGQPGAKGEPGDNGAKGDSGPPGPAGPTGAPGPQG 838
Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
P GP A GP A PG + V
Sbjct: 839 PVGNT---GPKGARGPAGPPGATGFPGAAGRV 867
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 107/318 (33%), Gaps = 48/318 (15%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---- 72
P T P L GP A PG + P LPG PG GPS AP
Sbjct: 488 PKGATGERGAPGLVGPKGATGEPGRTGEPGLPGAKGMTGSPGNPGPDGKIGPSGAPGQDG 547
Query: 73 -----------------DLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPG--------- 103
PGP A PG GP+ AP G
Sbjct: 548 RPGPPGPGGARGQPGVMGFPGPKGAAGEAGKPGERGTMGPTGPAGAPGKDGDVGAQGPPG 607
Query: 104 ---PSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
P+ GP+ +P LPGP A G +PG + AP G PG
Sbjct: 608 PAGPAGERGEQGPAGSPGFQGLPGPQGAVGETGKPGEQGVPGEAGAPGPAGARGDRGFPG 667
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
AP GP+ A PG S G + AP PG P L G +PG A
Sbjct: 668 ERGAPGAIGPAGARGSPGASGNDGAKGDAGAPGTPGAQGPPGLQG------MPGERGAAG 721
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
LPG GP A PG L GP LPGP+ +P G A GPS
Sbjct: 722 LPGLRGNRGDQGPKGADGTPGKDGPRGLTGPIG---LPGPAGSPGDKGEPGAQGPVGPSG 778
Query: 278 APDLPGPSSAPDLPGPSS 295
A PG PGP+
Sbjct: 779 ARGPPGERGEAGPPGPAG 796
>gi|326925846|ref|XP_003209119.1| PREDICTED: hypothetical protein LOC100539562 [Meleagris gallopavo]
Length = 1522
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 105/315 (33%), Gaps = 40/315 (12%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPG 85
LPG + P PG + + + GP P LPG P + G PGP+ G
Sbjct: 749 LPGNNGQPGFPGQTGSKGIQGPQGFPGLPGTQGPMGISGVKGEEGNAGPPGPNGECGDMG 808
Query: 86 PSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSS------APDLPGPSSAPD 136
LPG + ++ G P PG + G AP PG S AP
Sbjct: 809 VKGERGLPGDGGSINIRLEKGQKGEPGFPGENGFRGERGEKGNTGFRGAPGFPGNSGAPG 868
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
LPG L G + PGP + + G LPG LPG P L GP
Sbjct: 869 LPGDHGDIGLMGFPGSRGFPGPKGSTGITGFKG---LPGDQGDVGLPGMPGNPGLTGPKG 925
Query: 197 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS------------SAPD 244
G PG P PG P PG P PG +
Sbjct: 926 PKGFCGFPGEKGSPGIQGQPGRPGSKGEPGYPG---IPGFPGATGPPGLPGEPGEKGKHG 982
Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGE 304
+ GP L G LPG LPG L G + PG S T Y GE
Sbjct: 983 ILGPPGLQGLTGSQGRKGLPG------LPGLDGLHGLKGQKGSAGAPGQSETGRPGYSGE 1036
Query: 305 AGHQKSPKGLEPKPA 319
G PKG +P
Sbjct: 1037 PG----PKGERGEPG 1047
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 96/275 (34%), Gaps = 17/275 (6%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P E G G AP PG S AP LPG L G + PGP + +
Sbjct: 837 PGENGFRGERGEKGNTGFRGAPGFPGNSGAPGLPGDHGDIGLMGFPGSRGFPGPKGSTGI 896
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G LPG LPG P L GP G PG P PG
Sbjct: 897 TGFKG---LPGDQGDVGLPGMPGNPGLTGPKGPKGFCGFPGEKGSPGIQGQPGRPGSKGE 953
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
P PG P PG + P LPG G P L G + + G P LPG
Sbjct: 954 PGYPG---IPGFPGATGPPGLPGEPGEKGKHGILGPPGLQGLTGSQ---GRKGLPGLPGL 1007
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
L G + PG S PG S P G P PG S P PG P
Sbjct: 1008 DGLHGLKGQKGSAGAPGQSET-GRPGYSGEPGPKGERGEPGWPG-ISIPGTPGERGFPGF 1065
Query: 264 PGPS-----SAPDLPGPSSA-PDLPGPSSAPDLPG 292
PG S P P PSSA P LPG P L G
Sbjct: 1066 PGRRGPVGPSGPRGPSPSSAPPGLPGDQGPPGLDG 1100
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 101/306 (33%), Gaps = 44/306 (14%)
Query: 33 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA--PDLPGPSSAPDLPGPSSA---PDLPGPS 87
P + G + AP PG +PG ++ P +PG P PG A P +PG
Sbjct: 592 ERGPTIDGKNGAPGPPGIDGQKGVPGDATYGPPGIPGNRGLPGPPGAQGARGDPGIPGLQ 651
Query: 88 SAPDLPGPSSAPDLPGPSSA---------------PDLPGPSS---APDLPGPSSAPDLP 129
P PG A GP LPGP+ LPG P
Sbjct: 652 GHPGTPGFPGAKGFRGPEGDIGAPGCPGTPGPPCDTRLPGPAGLRGVIGLPGSQGLPGYK 711
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPD------------LPGPSSAPDLPGPSSAPDLPGPS 177
G L GP L G + LPG + P PG + + + GP
Sbjct: 712 GQKGDRGLAGPPGIKGLKGSPGSQGPPGPPGSRGLPGLPGNNGQPGFPGQTGSKGIQGPQ 771
Query: 178 SAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPS 231
P LPG P + G PGP+ G LPG + ++ G
Sbjct: 772 GFPGLPGTQGPMGISGVKGEEGNAGPPGPNGECGDMGVKGERGLPGDGGSINIRLEKGQK 831
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
P PG + G G AP PG S AP LPG L G + P
Sbjct: 832 GEPGFPGENG---FRGERGEKGNTGFRGAPGFPGNSGAPGLPGDHGDIGLMGFPGSRGFP 888
Query: 292 GPSSTV 297
GP +
Sbjct: 889 GPKGST 894
>gi|208609645|dbj|BAG72200.1| collagen type I alpha 1 [Carassius auratus]
Length = 1448
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 98/284 (34%), Gaps = 24/284 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
L GP A PG + +PG + AP G PG AP GP+ A PG +
Sbjct: 630 LTGPQGATGEPGKAGEQGVPGEAGAPGPSGSRGDRGFPGERGAPGPAGPAGARGSPGSAG 689
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
G + AP PG P L G +PG + LPG G PG
Sbjct: 690 NDGAKGDAGAPGAPGAQGPPGLQG------MPGERGSAGLPGLKGDRGDQGAKGTDGAPG 743
Query: 149 PSSAPDL---------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
+ G + AP L GP+ A PG PGP+ G
Sbjct: 744 KDGIRGMTGPIGPPGPAGAPGDKGETGAPGLVGPNGARGPPGERGETGAPGPAG---FAG 800
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
P A LPG P G PGP+ A PGP GP A GP A
Sbjct: 801 PPGADGLPGAKGEPGDNGAKGDAGAPGPAGATGAPGPQGPVGSTGPKGARGAAGPPGATG 860
Query: 254 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
PG + PGP+ GPS AP G GP+
Sbjct: 861 FPGAAGRVGPPGPAGNAGPAGPSGAPGKEGQKGNRGETGPAGRT 904
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 77/211 (36%), Gaps = 3/211 (1%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
G + AP L GP+ A PG PGP+ GP A LPG P G
Sbjct: 767 GETGAPGLVGPNGARGPPGERGETGAPGPAG---FAGPPGADGLPGAKGEPGDNGAKGDA 823
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
PGP+ A PGP GP A GP A PG + PGP+ GPS
Sbjct: 824 GAPGPAGATGAPGPQGPVGSTGPKGARGAAGPPGATGFPGAAGRVGPPGPAGNAGPAGPS 883
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
AP G GP+ G + P PG P G + PGP+
Sbjct: 884 GAPGKEGQKGNRGETGPAGRTGEVGAAGPPGAPGEKGNPGAEGAPGSAGTPGPAGIAGQR 943
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
G P G P LPG S P GPS
Sbjct: 944 GIVGLPGQRGERGFPGLPGQSGEPGKQGPSG 974
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 77/211 (36%), Gaps = 3/211 (1%)
Query: 58 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 117
G + AP L GP+ A PG PGP+ GP A LPG P G
Sbjct: 767 GETGAPGLVGPNGARGPPGERGETGAPGPAG---FAGPPGADGLPGAKGEPGDNGAKGDA 823
Query: 118 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 177
PGP+ A PGP GP A GP A PG + PGP+ GPS
Sbjct: 824 GAPGPAGATGAPGPQGPVGSTGPKGARGAAGPPGATGFPGAAGRVGPPGPAGNAGPAGPS 883
Query: 178 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
AP G GP+ G + P PG P G + PGP+
Sbjct: 884 GAPGKEGQKGNRGETGPAGRTGEVGAAGPPGAPGEKGNPGAEGAPGSAGTPGPAGIAGQR 943
Query: 238 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
G P G P LPG S P GPS
Sbjct: 944 GIVGLPGQRGERGFPGLPGQSGEPGKQGPSG 974
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 77/211 (36%), Gaps = 3/211 (1%)
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
G + AP L GP+ A PG PGP+ GP A LPG P G
Sbjct: 767 GETGAPGLVGPNGARGPPGERGETGAPGPAG---FAGPPGADGLPGAKGEPGDNGAKGDA 823
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
PGP+ A PGP GP A GP A PG + PGP+ GPS
Sbjct: 824 GAPGPAGATGAPGPQGPVGSTGPKGARGAAGPPGATGFPGAAGRVGPPGPAGNAGPAGPS 883
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
AP G GP+ G + P PG P G + PGP+
Sbjct: 884 GAPGKEGQKGNRGETGPAGRTGEVGAAGPPGAPGEKGNPGAEGAPGSAGTPGPAGIAGQR 943
Query: 265 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
G P G P LPG S P GPS
Sbjct: 944 GIVGLPGQRGERGFPGLPGQSGEPGKQGPSG 974
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 67/189 (35%), Gaps = 3/189 (1%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E PGP+ GP A LPG P G PGP+ A PGP G
Sbjct: 789 ETGAPGPAG---FAGPPGADGLPGAKGEPGDNGAKGDAGAPGPAGATGAPGPQGPVGSTG 845
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P A GP A PG + PGP+ GPS AP G GP+
Sbjct: 846 PKGARGAAGPPGATGFPGAAGRVGPPGPAGNAGPAGPSGAPGKEGQKGNRGETGPAGRTG 905
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
G + P PG P G + PGP+ G P G P LPG S
Sbjct: 906 EVGAAGPPGAPGEKGNPGAEGAPGSAGTPGPAGIAGQRGIVGLPGQRGERGFPGLPGQSG 965
Query: 206 APDLPGPSS 214
P GPS
Sbjct: 966 EPGKQGPSG 974
>gi|348517853|ref|XP_003446447.1| PREDICTED: collagen alpha-1(I) chain-like isoform 2 [Oreochromis
niloticus]
Length = 1451
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 79/213 (37%), Gaps = 18/213 (8%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
GP+ +P G LPGP A G +PG + AP G PG AP
Sbjct: 623 GPAGSPGFQG------LPGPQGAVGETGKPGEQGVPGEAGAPGPAGARGDRGFPGERGAP 676
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 159
GP+ A PG S G + AP PG P L G +PG A LPG
Sbjct: 677 GAIGPAGARGSPGASGNDGAKGDAGAPGTPGAQGPPGLQG------MPGERGAAGLPGLR 730
Query: 160 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
GP A PG L GP LPGP+ +P G A GPS A P
Sbjct: 731 GNRGDQGPKGADGTPGKDGPRGLTGPIG---LPGPAGSPGDKGEPGAQGPVGPSGARGPP 787
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
G PGP+ GP A PG P
Sbjct: 788 GERGEAGPPGPAG---FAGPPGADGQPGAKGEP 817
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 77/208 (37%), Gaps = 15/208 (7%)
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
GP+ +P G LPGP A G +PG + AP G PG AP
Sbjct: 623 GPAGSPGFQG------LPGPQGAVGETGKPGEQGVPGEAGAPGPAGARGDRGFPGERGAP 676
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
GP+ A PG S G + AP PG P L G +PG A LPG
Sbjct: 677 GAIGPAGARGSPGASGNDGAKGDAGAPGTPGAQGPPGLQG------MPGERGAAGLPGLR 730
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
GP A PG L GP LPGP+ +P G A GPS A P
Sbjct: 731 GNRGDQGPKGADGTPGKDGPRGLTGPIG---LPGPAGSPGDKGEPGAQGPVGPSGARGPP 787
Query: 265 GPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G PGP+ PG P G
Sbjct: 788 GERGEAGPPGPAGFAGPPGADGQPGAKG 815
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 73/197 (37%), Gaps = 12/197 (6%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPGP A G +PG + AP G PG AP GP+ A PG S
Sbjct: 633 LPGPQGAVGETGKPGEQGVPGEAGAPGPAGARGDRGFPGERGAPGAIGPAGARGSPGASG 692
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
G + AP PG P L G +PG A LPG GP A PG
Sbjct: 693 NDGAKGDAGAPGTPGAQGPPGLQG------MPGERGAAGLPGLRGNRGDQGPKGADGTPG 746
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
L GP LPGP+ +P G A GPS A PG PGP+
Sbjct: 747 KDGPRGLTGPIG---LPGPAGSPGDKGEPGAQGPVGPSGARGPPGERGEAGPPGPAG--- 800
Query: 209 LPGPSSAPDLPGPSSAP 225
GP A PG P
Sbjct: 801 FAGPPGADGQPGAKGEP 817
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 71/187 (37%), Gaps = 12/187 (6%)
Query: 21 TERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
T +P E +PG + AP G PG AP GP+ A PG S G + A
Sbjct: 643 TGKPGEQGVPGEAGAPGPAGARGDRGFPGERGAPGAIGPAGARGSPGASGNDGAKGDAGA 702
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
P PG P L G +PG A LPG GP A PG L GP
Sbjct: 703 PGTPGAQGPPGLQG------MPGERGAAGLPGLRGNRGDQGPKGADGTPGKDGPRGLTGP 756
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
LPGP+ +P G A GPS A PG PGP+ GP A
Sbjct: 757 IG---LPGPAGSPGDKGEPGAQGPVGPSGARGPPGERGEAGPPGPAG---FAGPPGADGQ 810
Query: 201 PGPSSAP 207
PG P
Sbjct: 811 PGAKGEP 817
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 101/298 (33%), Gaps = 48/298 (16%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG P GP+ G AP L GP A PG + P LPG PG
Sbjct: 478 PGGRGFPGSDGPAGPKGATGERGAPGLVGPKGATGEPGRTGEPGLPGAKGMTGSPGNPGP 537
Query: 90 PDLPGPSSAP---------------------DLPGPSSA---PDLPGPSSAPDLPGPSSA 125
GPS AP PGP A PG GP+ A
Sbjct: 538 DGKIGPSGAPGQDGRPGPPGPGGARGQPGVMGFPGPKGAAGEAGKPGERGTMGPTGPAGA 597
Query: 126 PDLPG------------PSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSA 170
P G P+ GP+ +P LPGP A G +PG + A
Sbjct: 598 PGKDGDVGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPQGAVGETGKPGEQGVPGEAGA 657
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
P G PG AP GP+ A PG S G + AP PG P L G
Sbjct: 658 PGPAGARGDRGFPGERGAPGAIGPAGARGSPGASGNDGAKGDAGAPGTPGAQGPPGLQG- 716
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
+PG A LPG GP A PG L GP LPGP+ +P
Sbjct: 717 -----MPGERGAAGLPGLRGNRGDQGPKGADGTPGKDGPRGLTGPIG---LPGPAGSP 766
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 98/272 (36%), Gaps = 18/272 (6%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E GP+ +P G LPGP A G +PG + AP G PG
Sbjct: 618 ERGEQGPAGSPGFQG------LPGPQGAVGETGKPGEQGVPGEAGAPGPAGARGDRGFPG 671
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
AP GP+ A PG S G + AP PG P L G +PG A
Sbjct: 672 ERGAPGAIGPAGARGSPGASGNDGAKGDAGAPGTPGAQGPPGLQG------MPGERGAAG 725
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
LPG GP A PG L GP LPGP+ +P G A GPS
Sbjct: 726 LPGLRGNRGDQGPKGADGTPGKDGPRGLTGPIG---LPGPAGSPGDKGEPGAQGPVGPSG 782
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
A PG PGP+ PG P G G S P GP+ AP G
Sbjct: 783 ARGPPGERGEAGPPGPAGFAGPPGADGQPGAKGEPGDNGAKGDSGPPGPAGPTGAPGPQG 842
Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
P GP A GP A PG + V
Sbjct: 843 PVGNT---GPKGARGPAGPPGATGFPGAAGRV 871
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 107/318 (33%), Gaps = 48/318 (15%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---- 72
P T P L GP A PG + P LPG PG GPS AP
Sbjct: 492 PKGATGERGAPGLVGPKGATGEPGRTGEPGLPGAKGMTGSPGNPGPDGKIGPSGAPGQDG 551
Query: 73 -----------------DLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPG--------- 103
PGP A PG GP+ AP G
Sbjct: 552 RPGPPGPGGARGQPGVMGFPGPKGAAGEAGKPGERGTMGPTGPAGAPGKDGDVGAQGPPG 611
Query: 104 ---PSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
P+ GP+ +P LPGP A G +PG + AP G PG
Sbjct: 612 PAGPAGERGEQGPAGSPGFQGLPGPQGAVGETGKPGEQGVPGEAGAPGPAGARGDRGFPG 671
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
AP GP+ A PG S G + AP PG P L G +PG A
Sbjct: 672 ERGAPGAIGPAGARGSPGASGNDGAKGDAGAPGTPGAQGPPGLQG------MPGERGAAG 725
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
LPG GP A PG L GP LPGP+ +P G A GPS
Sbjct: 726 LPGLRGNRGDQGPKGADGTPGKDGPRGLTGPIG---LPGPAGSPGDKGEPGAQGPVGPSG 782
Query: 278 APDLPGPSSAPDLPGPSS 295
A PG PGP+
Sbjct: 783 ARGPPGERGEAGPPGPAG 800
>gi|6753480|ref|NP_034055.1| collagen alpha-1(X) chain precursor [Mus musculus]
gi|1168725|sp|Q05306.1|COAA1_MOUSE RecName: Full=Collagen alpha-1(X) chain; Flags: Precursor
gi|50481|emb|CAA47763.1| alpha 1 (X) collagen chain [Mus musculus]
gi|148672943|gb|EDL04890.1| procollagen, type X, alpha 1 [Mus musculus]
gi|162317770|gb|AAI56193.1| Collagen, type X, alpha 1 [synthetic construct]
gi|162318716|gb|AAI56931.1| Collagen, type X, alpha 1 [synthetic construct]
Length = 680
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 78/206 (37%), Gaps = 28/206 (13%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +P +PG P AP + GP AP G P L G LPG A
Sbjct: 272 PGQPGIPGEKGHP------GAPGIAGPPGAPGF-GKQGLPGLRGQRGPAGLPGAPGAKGE 324
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
GP+ P PG +P GP +PG +PG L GP+ P G
Sbjct: 325 RGPAGHPGEPGLPGSPGNMGPQGPKGIPGNHG---IPGAKGEIGLVGPAGPPGARGARGP 381
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
P L G + P PG L GP P LPG P + G P L GP GP
Sbjct: 382 PGLDGKTGYPGEPG------LNGPKGNPGLPGQKGDPGVGG---TPGLRGPV------GP 426
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPG 229
A +PG + GP P +PG
Sbjct: 427 VGAKGVPGHNGE---AGPRGEPGIPG 449
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 76/203 (37%), Gaps = 28/203 (13%)
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
P +PG P AP + GP AP G P L G LPG A GP
Sbjct: 275 PGIPGEKGHP------GAPGIAGPPGAPGF-GKQGLPGLRGQRGPAGLPGAPGAKGERGP 327
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
+ P PG +P GP +PG +PG L GP+ P G P L
Sbjct: 328 AGHPGEPGLPGSPGNMGPQGPKGIPGNHG---IPGAKGEIGLVGPAGPPGARGARGPPGL 384
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
G + P PG L GP P LPG P + G P L GP GP A
Sbjct: 385 DGKTGYPGEPG------LNGPKGNPGLPGQKGDPGVGG---TPGLRGPV------GPVGA 429
Query: 252 PDLPGPSSAPDLPGPSSAPDLPG 274
+PG + GP P +PG
Sbjct: 430 KGVPGHNGE---AGPRGEPGIPG 449
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 72/194 (37%), Gaps = 19/194 (9%)
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 158
P +PG P AP + GP AP G P L G LPG A GP
Sbjct: 275 PGIPGEKGHP------GAPGIAGPPGAPGF-GKQGLPGLRGQRGPAGLPGAPGAKGERGP 327
Query: 159 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
+ P PG +P GP +PG +PG L GP+ P G P L
Sbjct: 328 AGHPGEPGLPGSPGNMGPQGPKGIPGNHG---IPGAKGEIGLVGPAGPPGARGARGPPGL 384
Query: 219 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 278
G + P PG L GP P LPG P + G GP A +PG +
Sbjct: 385 DGKTGYPGEPG------LNGPKGNPGLPGQKGDPGVGGTPGLRGPVGPVGAKGVPGHNGE 438
Query: 279 PDLPGPSSAPDLPG 292
GP P +PG
Sbjct: 439 ---AGPRGEPGIPG 449
>gi|268322308|emb|CBH32885.1| alpha 1 type IV collagen [Haliotis tuberculata]
Length = 1777
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 96/284 (33%), Gaps = 16/284 (5%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 72
L V R L P +PG AP G P +PG S P G LPG A
Sbjct: 728 LKGEVGIRGL-PGIPGLDGAPGFEGELGLDGLPGMPGLSGIPGRKGDDGVAGLPGGQGAR 786
Query: 73 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
G P LPG P PG G P L GP P L P G +
Sbjct: 787 ---GSKGYPGLPGDEGLPGQPGLKGLVGDDGLPGLPGLQGPRGEPGLTPRQGIPGERGIA 843
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
P PG A LPG P PGP P G P LPG L G LP
Sbjct: 844 GIPGEPGVGGAVGLPG---QPGTPGPDGYPGTLGEDGLPGLPGSPGLKGLSGEPGGRGLP 900
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
G + G +P L G LPG P GP P PG L G P
Sbjct: 901 GLPGLQGMQGFPGSPGLRGIRGDEGLPG---IPGFAGPKGQPGFPGIRG---LDGEDGLP 954
Query: 253 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
PG + LPG + G + P PG LPG S
Sbjct: 955 GQPGEAGLDGLPGRPGLAGMKGVNGLPGSPGTDGLTGLPGASGA 998
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 103/307 (33%), Gaps = 38/307 (12%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--------------- 67
RP PG LPG S L G + PG P PG
Sbjct: 1219 RPGADGFPGARGEDGLPGLSGPTGLRGENGLQGRPGLDGEPGQPGFDGGPGLPGLNGEDA 1278
Query: 68 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGP 122
P+ P PG P P P LPG P PG SA LPG P +PG
Sbjct: 1279 PAGRPGPPGVDGIPGTPALPGLPGLPGEDGFPGRPGLQGPKGESAFSLPGLKGLPGVPGL 1338
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP------GPSSAPDLPGP 176
P LPG P PG + G ++ P LPG P G S P +PG
Sbjct: 1339 DGLPGLPGDRGRPGQPGLPGLMGMKGDTALPGLPGVDGRDGEPGRVGEDGESGQPGIPGV 1398
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLP-GPSS 232
G + P G P LPG S P PG P PGP LP P
Sbjct: 1399 RGRRGDDGSNGFPGRTGERGDPGLPGEIGQSGRPGSPGLKGYPGDPGPIDIARLPDSPRG 1458
Query: 233 APDLPGPSSAPDLPGPSSA------PDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPS 285
G S P GP P L G PG P SA D P P +PG
Sbjct: 1459 DKGGRGESGRPGFEGPRGREGDDGLPGLNGLRGTDGFPGTPGSAGDQGAPGQ-PGIPGID 1517
Query: 286 SAPDLPG 292
P LPG
Sbjct: 1518 GMPGLPG 1524
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 103/290 (35%), Gaps = 22/290 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
+T R P G + P PG A LPG P PGP P G P LPG
Sbjct: 830 LTPRQGIPGERGIAGIPGEPGVGGAVGLPG---QPGTPGPDGYPGTLGEDGLPGLPGSPG 886
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
L G LPG + G +P L G LPG P GP P PG
Sbjct: 887 LKGLSGEPGGRGLPGLPGLQGMQGFPGSPGLRGIRGDEGLPG---IPGFAGPKGQPGFPG 943
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
L G P PG + LPG + G + P PG LPG S A
Sbjct: 944 IRG---LDGEDGLPGQPGEAGLDGLPGRPGLAGMKGVNGLPGSPGTDGLTGLPGASGAKG 1000
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPD--------LPGPSSAPDLPGPSS 250
G + P LPG P G S P L G P + D + G LPG S
Sbjct: 1001 EVGNAGLPGLPGLPGQPGPKGFSGEPGLNGLPGAKGDTAAFGFKGVKGQRGLDGLPGLSG 1060
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSTV 297
P LPG L G P PG LPG S P +PGP +
Sbjct: 1061 QPGLPGRQGLSGLKG-ERGPSYPGEIGREGLPGLSGLPGPDGVPGPKGRI 1109
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 94/270 (34%), Gaps = 27/270 (10%)
Query: 48 PGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------- 94
PGPS P PG LPG S L G + PG P PG
Sbjct: 1214 PGPSGRPGADGFPGARGEDGLPGLSGPTGLRGENGLQGRPGLDGEPGQPGFDGGPGLPGL 1273
Query: 95 -PSSAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPS 150
AP PGP +PG + P LPG PG P L GP SA LPG
Sbjct: 1274 NGEDAPAGRPGPPGVDGIPGTPALPGLPGLPGEDGFPG---RPGLQGPKGESAFSLPGLK 1330
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
P +PG P LPG P PG + G ++ P LPG PG
Sbjct: 1331 GLPGVPGLDGLPGLPGDRGRPGQPGLPGLMGMKGDTALPGLPGVDGRDGEPGRVGE---D 1387
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS 267
G S P +PG G + P G P LPG S P PG P PGP
Sbjct: 1388 GESGQPGIPGVRGRRGDDGSNGFPGRTGERGDPGLPGEIGQSGRPGSPGLKGYPGDPGPI 1447
Query: 268 SAPDLP-GPSSAPDLPGPSSAPDLPGPSST 296
LP P G S P GP
Sbjct: 1448 DIARLPDSPRGDKGGRGESGRPGFEGPRGR 1477
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 98/285 (34%), Gaps = 12/285 (4%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P L GP P L P G + P PG A LPG P PGP P G
Sbjct: 819 PGLQGPRGEPGLTPRQGIPGERGIAGIPGEPGVGGAVGLPG---QPGTPGPDGYPGTLGE 875
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
P LPG L G LPG + G +P L G LPG P
Sbjct: 876 DGLPGLPGSPGLKGLSGEPGGRGLPGLPGLQGMQGFPGSPGLRGIRGDEGLPG---IPGF 932
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
GP P PG L G P PG + LPG + G + P PG
Sbjct: 933 AGPKGQPGFPGIRG---LDGEDGLPGQPGEAGLDGLPGRPGLAGMKGVNGLPGSPGTDGL 989
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
LPG S A G + P LPG P G S P L G A + G
Sbjct: 990 TGLPGASGAKGEVGNAGLPGLPGLPGQPGPKGFSGEPGLNGLPGAKGDTAAFGFKGVKGQ 1049
Query: 267 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSP 311
LPG S P LPG L G SY GE G + P
Sbjct: 1050 RGLDGLPGLSGQPGLPGRQGLSGLKGERGP---SYPGEIGREGLP 1091
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 107/323 (33%), Gaps = 46/323 (14%)
Query: 11 TEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 70
T A +R L+ LPG S P LPG L G P PG LPG S
Sbjct: 1038 TAAFGFKGVKGQRGLD-GLPGLSGQPGLPGRQGLSGLKG-ERGPSYPGEIGREGLPGLSG 1095
Query: 71 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
LPGP P G +PG P PG G P L G LPG
Sbjct: 1096 ---LPGPDGVPGPKGRIGEMGIPGLDGLPGDPGLQGRDGNDGLPGLPGLKGQRGLDGLPG 1152
Query: 131 PSSAPD------LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------------PSSAPD 172
+ LPG P L G LPG PG
Sbjct: 1153 LNGEQGGLGVDGLPGTPGLPGLTGDRGQEGLPGIDGELGQPGDDGLSGLPGLPGLPGMKG 1212
Query: 173 LPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--------- 220
PGPS P PG LPG S L G + PG P PG
Sbjct: 1213 SPGPSGRPGADGFPGARGEDGLPGLSGPTGLRGENGLQGRPGLDGEPGQPGFDGGPGLPG 1272
Query: 221 --PSSAP-DLPGPSSAPDLPGPSSAPDLPG-PS-----SAPDLPGPS--SAPDLPGPSSA 269
AP PGP +PG + P LPG P P L GP SA LPG
Sbjct: 1273 LNGEDAPAGRPGPPGVDGIPGTPALPGLPGLPGEDGFPGRPGLQGPKGESAFSLPGLKGL 1332
Query: 270 PDLPGPSSAPDLPGPSSAPDLPG 292
P +PG P LPG P PG
Sbjct: 1333 PGVPGLDGLPGLPGDRGRPGQPG 1355
>gi|300810921|gb|ADK35755.1| collagen type I alpha 1 [Ctenopharyngodon idella]
Length = 1448
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 86/248 (34%), Gaps = 24/248 (9%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
LPGP A PG S +PG + AP G PG AP GP+ A PG +
Sbjct: 630 LPGPQGATGEPGKSGEQGVPGEAGAPGPAGSRGDRGFPGERGAPGPAGPAGARGSPGSAG 689
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
G + AP PG P L G +PG A LPG G PG
Sbjct: 690 NDGAKGDAGAPGAPGAQGPPGLQG------MPGERGAAGLPGLKGDRGDQGAKGTDGAPG 743
Query: 185 PSSAPDL---------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
+ G + AP L GP+ A PG PGP+ G
Sbjct: 744 KDGIRGMTGPIGPPGPAGAPGDKGETGAPGLVGPTGARGPPGERGETGAPGPAG---FAG 800
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
P A LPG G PGP+ A PGP GP A GP A
Sbjct: 801 PPGADGLPGAKGEAGDNGAKGDAGSPGPAGATGAPGPQGPVGATGPKGARGAAGPPGATG 860
Query: 290 LPGPSSTV 297
PG + V
Sbjct: 861 FPGAAGRV 868
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 84/243 (34%), Gaps = 24/243 (9%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
LPGP A PG S +PG + AP G PG AP GP+ A PG +
Sbjct: 630 LPGPQGATGEPGKSGEQGVPGEAGAPGPAGSRGDRGFPGERGAPGPAGPAGARGSPGSAG 689
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
G + AP PG P L G +PG A LPG G PG
Sbjct: 690 NDGAKGDAGAPGAPGAQGPPGLQG------MPGERGAAGLPGLKGDRGDQGAKGTDGAPG 743
Query: 167 PSSAPDL---------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
+ G + AP L GP+ A PG PGP+ G
Sbjct: 744 KDGIRGMTGPIGPPGPAGAPGDKGETGAPGLVGPTGARGPPGERGETGAPGPAG---FAG 800
Query: 212 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 271
P A LPG G PGP+ A PGP GP A GP A
Sbjct: 801 PPGADGLPGAKGEAGDNGAKGDAGSPGPAGATGAPGPQGPVGATGPKGARGAAGPPGATG 860
Query: 272 LPG 274
PG
Sbjct: 861 FPG 863
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 84/243 (34%), Gaps = 24/243 (9%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
LPGP A PG S +PG + AP G PG AP GP+ A PG +
Sbjct: 630 LPGPQGATGEPGKSGEQGVPGEAGAPGPAGSRGDRGFPGERGAPGPAGPAGARGSPGSAG 689
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
G + AP PG P L G +PG A LPG G PG
Sbjct: 690 NDGAKGDAGAPGAPGAQGPPGLQG------MPGERGAAGLPGLKGDRGDQGAKGTDGAPG 743
Query: 176 PSSAPDL---------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
+ G + AP L GP+ A PG PGP+ G
Sbjct: 744 KDGIRGMTGPIGPPGPAGAPGDKGETGAPGLVGPTGARGPPGERGETGAPGPAG---FAG 800
Query: 221 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 280
P A LPG G PGP+ A PGP GP A GP A
Sbjct: 801 PPGADGLPGAKGEAGDNGAKGDAGSPGPAGATGAPGPQGPVGATGPKGARGAAGPPGATG 860
Query: 281 LPG 283
PG
Sbjct: 861 FPG 863
>gi|71988210|ref|NP_001022663.1| Protein EMB-9, isoform b [Caenorhabditis elegans]
gi|42733226|emb|CAE52901.2| Protein EMB-9, isoform b [Caenorhabditis elegans]
Length = 1502
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 76/214 (35%), Gaps = 8/214 (3%)
Query: 36 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 95
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1064 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1117
Query: 96 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 155
+ P G P G S PG P + GP PG LPG L
Sbjct: 1118 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1177
Query: 156 PGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 213
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1178 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1237
Query: 214 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
P G G + P LPG P PG
Sbjct: 1238 GMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1271
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 76/214 (35%), Gaps = 8/214 (3%)
Query: 54 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 113
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1064 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1117
Query: 114 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 173
+ P G P G S PG P + GP PG LPG L
Sbjct: 1118 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1177
Query: 174 PGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1178 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1237
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
P G G + P LPG P PG
Sbjct: 1238 GMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1271
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 76/214 (35%), Gaps = 8/214 (3%)
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1064 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1117
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
+ P G P G S PG P + GP PG LPG L
Sbjct: 1118 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1177
Query: 192 PGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1178 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1237
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
P G G + P LPG P PG
Sbjct: 1238 GMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1271
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 78/216 (36%), Gaps = 9/216 (4%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
LP ER L P L G LPG AP +PG P L G PG AP P
Sbjct: 1063 LPGYPGERGL-PGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAP 1115
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G + P G P G S PG P + GP PG LPG
Sbjct: 1116 GSNGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGRE 1175
Query: 136 DLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
LPGP + + PG PG P LPG + PG + P PG P PG
Sbjct: 1176 GLPGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPG 1235
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
S P G G + P LPG P PG
Sbjct: 1236 LSGMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1271
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 97/296 (32%), Gaps = 47/296 (15%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDL--PGPSSA 80
P + G P +PG + P L G P L G + PG P SA L PG
Sbjct: 897 PGQQGREGEKGYPGIPGENGLPGLRGQDGQPGLKGENGLDGQPGYPGSAGQLGTPGDVGY 956
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-------------------PSS-APDLP 120
P PG + G P L G S P PG P + D+
Sbjct: 957 PGAPGENGDNGNQGRDGQPGLRGESGQPGQPGLPGRDGQPGPVGPPGDDGYPGAPGQDIY 1016
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------------PDLPGPS 168
GP PG + PG P PG + P PG P PG
Sbjct: 1017 GP------PGQAGQDGYPGLDGLPGAPGLNGEPGSPGQYGMPGLPGGPGESGLPGYPGER 1070
Query: 169 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
P L G LPG AP +PG P L G PG AP PG + P
Sbjct: 1071 GLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGSNGYPGER 1124
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
G P G S PG P + GP PG LPG LPGP
Sbjct: 1125 GLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGLPGP 1180
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 65/181 (35%), Gaps = 8/181 (4%)
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1064 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1117
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
+ P G P G S PG P + GP PG LPG L
Sbjct: 1118 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1177
Query: 237 PGPSS--APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1178 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1237
Query: 295 S 295
Sbjct: 1238 G 1238
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 71/205 (34%), Gaps = 11/205 (5%)
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1064 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1117
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
+ P G P G S PG P + GP PG LPG L
Sbjct: 1118 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1177
Query: 210 PGPSS--APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
PGP + + PG PG P LPG + PG + P PG PGP
Sbjct: 1178 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDG---YPGPP 1234
Query: 268 SAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG G + PG
Sbjct: 1235 GLSGMPGHGGDQGFQGAAGRTGNPG 1259
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 53/146 (36%), Gaps = 9/146 (6%)
Query: 114 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 173
+ P L G S P LPG +PG P L G PG P PG
Sbjct: 849 TGMPGLKGESGLPGLPGRQGNDGIPG---QPGLEGECGEDGFPGSPGQPGYPGQQG---R 902
Query: 174 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDL--PGPSSAPDLPGP 230
G P +PG + P L G P L G + PG P SA L PG P PG
Sbjct: 903 EGEKGYPGIPGENGLPGLRGQDGQPGLKGENGLDGQPGYPGSAGQLGTPGDVGYPGAPGE 962
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ G P L G S P PG
Sbjct: 963 NGDNGNQGRDGQPGLRGESGQPGQPG 988
>gi|327261153|ref|XP_003215396.1| PREDICTED: collagen alpha-1(IV) chain-like [Anolis carolinensis]
Length = 1678
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 86/256 (33%), Gaps = 22/256 (8%)
Query: 63 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 122
P + G P L G LPG + D + G PG S PG
Sbjct: 920 PGVSGLRGDPGLKGEKGEDGLPGKPGSMDHVDMENMKGQKGDQGDRGQPGLSGQRGTPGD 979
Query: 123 SSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 173
P +PG P LP GP PG P LPG + P G L
Sbjct: 980 PGTPGMPGKDGDPGLPGEAGPKGDAGSPGYQGEPGLPGHKGSIGEMGLPGQSGEKGVQGL 1039
Query: 174 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL--PGPSSAPDLPGPSSAPDLPGPS 231
PG + P +PG G + P + P + D PG + +P PG G +
Sbjct: 1040 PGEAGRPGIPGEKGLKGEKGQAGFPGIGFPGAPGDKGDPGRTGSPGFPGEKGEKGALGIA 1099
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
P PG P PG AP PG PG P PG PG A LP
Sbjct: 1100 GIPGSPGIKGQPGFPGSPGAPGSPGEKGEQGFPG---VPGFPGSKGQKGDPGSQGAAGLP 1156
Query: 292 GPSSTVLGSYLGEAGH 307
G GEAG+
Sbjct: 1157 GER--------GEAGY 1164
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 83/247 (33%), Gaps = 17/247 (6%)
Query: 36 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 95
P + G P L G LPG + D + G PG S PG
Sbjct: 920 PGVSGLRGDPGLKGEKGEDGLPGKPGSMDHVDMENMKGQKGDQGDRGQPGLSGQRGTPGD 979
Query: 96 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGP 149
P +PG P LPG + GP PG P LPG + P G
Sbjct: 980 PGTPGMPGKDGDPGLPGEA------GPKGDAGSPGYQGEPGLPGHKGSIGEMGLPGQSGE 1033
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL--PGPSSAPDLPGPSSAP 207
LPG + P +PG G + P + P + D PG + +P PG
Sbjct: 1034 KGVQGLPGEAGRPGIPGEKGLKGEKGQAGFPGIGFPGAPGDKGDPGRTGSPGFPGEKGEK 1093
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
G + P PG P PG AP PG PG P PG PG
Sbjct: 1094 GALGIAGIPGSPGIKGQPGFPGSPGAPGSPGEKGEQGFPG---VPGFPGSKGQKGDPGSQ 1150
Query: 268 SAPDLPG 274
A LPG
Sbjct: 1151 GAAGLPG 1157
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 89/271 (32%), Gaps = 21/271 (7%)
Query: 33 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 92
A + G P +PG D+PGP PG P LPG LPG
Sbjct: 828 KGASGIKGERGYPGVPGL----DMPGPQGEKGAPG---LPGLPGLQGVRGLPGEQGQEGR 880
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
PG P + G PG P G G P + G P L G
Sbjct: 881 PG---TPGIKGEMGVMGTPGFQGPPGPIGSPGPSGEKGDKGFPGVSGLRGDPGLKGEKGE 937
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-- 210
LPG + D + G PG S PG P +PG P LP
Sbjct: 938 DGLPGKPGSMDHVDMENMKGQKGDQGDRGQPGLSGQRGTPGDPGTPGMPGKDGDPGLPGE 997
Query: 211 -GPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
GP PG P LPG + P G LPG + P +PG
Sbjct: 998 AGPKGDAGSPGYQGEPGLPGHKGSIGEMGLPGQSGEKGVQGLPGEAGRPGIPGEKGLKGE 1057
Query: 264 PGPSSAPDLPGPSSAPDL--PGPSSAPDLPG 292
G + P + P + D PG + +P PG
Sbjct: 1058 KGQAGFPGIGFPGAPGDKGDPGRTGSPGFPG 1088
>gi|73532751|ref|NP_001026988.1| collagen alpha-4(IV) chain [Canis lupus familiaris]
gi|32816561|gb|AAP88582.1| collagen type IV alpha 4 chain [Canis lupus familiaris]
Length = 1688
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 86/251 (34%), Gaps = 21/251 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
LPGP P GPS P G S P GP+ P PG G + +PG
Sbjct: 763 LPGP---PGKRGPSGVPGSKGHRGDSGRPGFAGPAGKPGSPGLKGPRGREGSAGFQGIPG 819
Query: 86 P------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
P AP +PG P PG AP G PGP+ LPG P G
Sbjct: 820 PPGHSCKRGAPGIPGQPGLPGAPGSPGAPGWKGQRGDVGPPGPAGMKGLPGVPGRPGAEG 879
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
P P +PGP LPG LPGP LPG P PG P G +
Sbjct: 880 PLGFPGVPGPLGDDGLPG------LPGPKGPQGLPG---FPGFPGERGKPGSEGRPGSKG 930
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
PG P G G P G + G + P PG P G
Sbjct: 931 EPGEDGRPGFFGDQGVKGAKGARGPPGDEGEMAVFSQKGKTGEPGPPGDDGFPGEEGDKG 990
Query: 260 APDLPGPSSAP 270
P +PG P
Sbjct: 991 NPGMPGRRGEP 1001
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 74/221 (33%), Gaps = 15/221 (6%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P P L GP G P PG S PG P LPG +P PG
Sbjct: 796 KPGSPGLKGPRGREGSAGFQGIPGPPGHSCKRGAPGIPGQPGLPGAPGSPGAPGWKGQRG 855
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
GP PGP+ LPG P GP P +PGP LPG LPGP
Sbjct: 856 DVGP------PGPAGMKGLPGVPGRPGAEGPLGFPGVPGPLGDDGLPG------LPGPKG 903
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
LPG P PG P G + PG P G G P G
Sbjct: 904 PQGLPG---FPGFPGERGKPGSEGRPGSKGEPGEDGRPGFFGDQGVKGAKGARGPPGDEG 960
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
+ G + P PG P G P +PG P
Sbjct: 961 EMAVFSQKGKTGEPGPPGDDGFPGEEGDKGNPGMPGRRGEP 1001
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 94/269 (34%), Gaps = 37/269 (13%)
Query: 43 SAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-----PDLPG 94
AP L GP PG S ++PGP P G P G + P PG
Sbjct: 692 GAPGLRCLDGPKGQRGKPGMS---EIPGP---PGFRGDMGDPGFEGEKGSSLLGPPGFPG 745
Query: 95 PSSAPDLPGPSS--APDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGP 149
A G A LPGP P GPS P G S P GP+ P PG
Sbjct: 746 SRGANGQKGMMGDIAYGLPGP---PGKRGPSGVPGSKGHRGDSGRPGFAGPAGKPGSPGL 802
Query: 150 SSAPDLPGPSSAPDLPGP------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
G + +PGP AP +PG P PG AP G PGP
Sbjct: 803 KGPRGREGSAGFQGIPGPPGHSCKRGAPGIPGQPGLPGAPGSPGAPGWKGQRGDVGPPGP 862
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
+ LPG P GP P +PGP LPG LPGP LPG P
Sbjct: 863 AGMKGLPGVPGRPGAEGPLGFPGVPGPLGDDGLPG------LPGPKGPQGLPG---FPGF 913
Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
PG P G + PG P G
Sbjct: 914 PGERGKPGSEGRPGSKGEPGEDGRPGFFG 942
>gi|410969050|ref|XP_003991010.1| PREDICTED: collagen alpha-1(III) chain [Felis catus]
Length = 1466
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 105/282 (37%), Gaps = 30/282 (10%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E LPGP P + GP+ P PG G + G + AP L G +
Sbjct: 238 RPGERGLPGP---PGMKGPAGMPGFPGMKGHRGFDGRNGE---KGETGAPGLKGENG--- 288
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG + AP GP A PG P LPG + A G + PGP P G
Sbjct: 289 LPGENGAPGPMGPRGA---PGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPG 345
Query: 143 APDLPGP------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
+P G PGP PGP P G GP+ P
Sbjct: 346 SPGAKGEVGPAGSPGSSGSPGQRGEPGPQGHAGAPGPPGPPGTNGSPGGKGEMGPAGIPG 405
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
PG A PGPS PG A PG + A PGP G + +P +PGP
Sbjct: 406 APGLIGARGPPGPSGTNGAPGQRGAAGEPGKNGAKGEPGPRGE---RGEAGSPGIPGPKG 462
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G +P PG + P G AP GP+ A LPG
Sbjct: 463 E---DGKDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPG 501
>gi|395854622|ref|XP_003799781.1| PREDICTED: collagen alpha-6(IV) chain [Otolemur garnettii]
Length = 1688
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 95/268 (35%), Gaps = 39/268 (14%)
Query: 63 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 122
P PG S P PG + + G P LPGP G P G +P PG
Sbjct: 267 PGFPGVSGQPGFPGFGTTGE-KGEKGIPGLPGPRGPMGSEGVHGPPGKQGKKGSPGFPGL 325
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
++ P + G + LPGP D G + P PG P LPG + G +P +
Sbjct: 326 NALPGIKGEKGSIGLPGPDIFVDTDG-AVIPGYPGDRGVPGLPGLRGNEGIKGLRGSPGV 384
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APD-LPGP------------------- 221
PG S P +PG P LPG PG + PD LPG
Sbjct: 385 PGLPSLPGVPGALGPPGLPGLKGDRGNPGRRTIGPDGLPGKDSWPGPPGPPGPPGPALDS 444
Query: 222 ----SSAPDLP------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 271
S P +P GP P L G L GP LPGP
Sbjct: 445 EILHSKEPGIPGLRGERGPRGNPGLKGVKGDSGLCACDGGVTNTGPPGERGLPGPQGLIG 504
Query: 272 LPGPSSAP------DLPGPSSAPDLPGP 293
LPG A + GP+ AP L GP
Sbjct: 505 LPGLKGARGDPGSLGMQGPAGAPGLFGP 532
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 98/317 (30%), Gaps = 44/317 (13%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSA 80
P P L G +P LPG + +P LPGP+ G P +PG + P L G S +
Sbjct: 866 PGSPGLIGLLGSPGLPGGTGSPGLPGPNGVKGSIGMIGFPGVPGLAGIPGTRGLKGISGS 925
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPD---------LPGPSSAPDLPGPSSAPDLPG- 130
P GPS PG PGP P L G GP +P G
Sbjct: 926 PGKVGPSGQAGSPGEKGDRGDPGPVGTPILRPPMPNLWLKGDKGFQGTAGPDGSPGRKGD 985
Query: 131 ------------------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 172
P + LPG +P G P L G PG
Sbjct: 986 KGKAGYPGPPGLPGTPGFPGTIKGLPGRPGSPGSTGLRGLPGLKGSQGITGFPGMKGQTG 1045
Query: 173 LPGPSSAPDLPGPSSAP-------------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
G P PG S P + GP G A G P
Sbjct: 1046 SQGLRGTPGRPGTSGLPGSKGDPGERVEISGVSGPKGQRGESGFKGAKGKDGLVGDVGFP 1105
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 279
G G S LPGP + G A PGPS P GP L GP P
Sbjct: 1106 GKKGENGKVGVSGDVGLPGPPGLRGIAGMRGAAGNPGPSGRPGASGPVGPSGLIGPKGFP 1165
Query: 280 DLPGPSSAPDLPGPSST 296
PG LPG T
Sbjct: 1166 GFPGLHGLNGLPGTKGT 1182
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 82/254 (32%), Gaps = 18/254 (7%)
Query: 19 TVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 78
T+ P P PG + LPG L G PG G P PG S
Sbjct: 1006 TIKGLPGRPGSPGSTGLRGLPG------LKGSQGITGFPGMKGQTGSQGLRGTPGRPGTS 1059
Query: 79 SAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 137
P G P ++ G S GP G A G PG
Sbjct: 1060 GLPGSKGDPGERVEISGVS------GPKGQRGESGFKGAKGKDGLVGDVGFPGKKGENGK 1113
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
G S LPGP + G A PGPS P GP L GP P PG
Sbjct: 1114 VGVSGDVGLPGPPGLRGIAGMRGAAGNPGPSGRPGASGPVGPSGLIGPKGFPGFPGLHGL 1173
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----PGPSSAPDLPGPSSAPD 253
LPG PG +S +PG + P G + + PG G P
Sbjct: 1174 NGLPGTKGTHGTPG-ASITGVPGSAGVPGPKGDKGSTGIAIGNPGKPGLKGQKGGRGFPG 1232
Query: 254 LPGPSSAPDLPGPS 267
L GP+ P PG S
Sbjct: 1233 LQGPAGLPGAPGIS 1246
Score = 38.1 bits (87), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 101/301 (33%), Gaps = 53/301 (17%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPS 69
Y PS P P PGP A LPG P G PG + P PGP
Sbjct: 658 GTYGPSGF---PGTPGFPGPKGARGLPGSPGKPGSRGNKGETGSPGLAPLPGLPGFPGPR 714
Query: 70 SAPDLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPG-PSSAPDLPGPSSAPDLPGPSS 124
PG P L G +P LPG AP D+ G S AP G P G
Sbjct: 715 GEKGFPGYLGLPGKDGLSGKVGSPGLPGSKGAPGDIFGFESGAPGEQGLQGLPGDRGFHG 774
Query: 125 APDLPGPS---SAPDLPGPS---SAPDLPGPS---------------------------- 150
LPGP L GP +P PG
Sbjct: 775 DLGLPGPQGMLGKAGLLGPKGELGSPGTPGHMGQPGPPGSGGLYGTKGKPGIPGIPGPPG 834
Query: 151 --SAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
P GP LPG P L G +P L G +P LPG + +P LPGP+
Sbjct: 835 TIGHPGKKGPRGEEGLRSLPGRKGLPGLKGLPGSPGLIGLLGSPGLPGGTGSPGLPGPNG 894
Query: 206 APDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
G P +PG + P L G S +P GPS PG PGP P
Sbjct: 895 VKGSIGMIGFPGVPGLAGIPGTRGLKGISGSPGKVGPSGQAGSPGEKGDRGDPGPVGTPI 954
Query: 263 L 263
L
Sbjct: 955 L 955
>gi|47229954|emb|CAG10368.1| unnamed protein product [Tetraodon nigroviridis]
Length = 610
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 92/220 (41%), Gaps = 26/220 (11%)
Query: 49 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
G + AP L GP AP PG PGP+ SAP PGP+ P GP P L G
Sbjct: 72 GDTGAPGLQGPRGAPGSPGS------PGPAGLSAPGKPGPAGIPGAMGPQGEPGLKGHPG 125
Query: 107 APDLPGPSS--APDLPGPS--SAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
P L GP +PGP + P+ GP+ AP LPG P PGPS PG S +
Sbjct: 126 IPGLQGPKGDRGVGVPGPQGHTGPEGAMGPTGAPGLPGIGK-PGKPGPSGE---PGKSGS 181
Query: 162 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 221
P G + GP PG P PG + AP LPG GP+ A
Sbjct: 182 PGRDGATGPMGPMGPKGHTGAPG-VGLPGKPGDNGAPGLPGSMGPKGQQGPAGA------ 234
Query: 222 SSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
+ AP +PG A G P PG + A GP+
Sbjct: 235 TGAPGVPGYGKPGANGEKGERGIPGSPGATGAKGEQGPTG 274
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 92/220 (41%), Gaps = 26/220 (11%)
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
G + AP L GP AP PG PGP+ SAP PGP+ P GP P L G
Sbjct: 72 GDTGAPGLQGPRGAPGSPGS------PGPAGLSAPGKPGPAGIPGAMGPQGEPGLKGHPG 125
Query: 134 APDLPGPSS--APDLPGPS--SAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
P L GP +PGP + P+ GP+ AP LPG P PGPS PG S +
Sbjct: 126 IPGLQGPKGDRGVGVPGPQGHTGPEGAMGPTGAPGLPGIGK-PGKPGPSGE---PGKSGS 181
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
P G + GP PG P PG + AP LPG GP+ A
Sbjct: 182 PGRDGATGPMGPMGPKGHTGAPG-VGLPGKPGDNGAPGLPGSMGPKGQQGPAGA------ 234
Query: 249 SSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
+ AP +PG A G P PG + A GP+
Sbjct: 235 TGAPGVPGYGKPGANGEKGERGIPGSPGATGAKGEQGPTG 274
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 92/220 (41%), Gaps = 26/220 (11%)
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
G + AP L GP AP PG PGP+ SAP PGP+ P GP P L G
Sbjct: 72 GDTGAPGLQGPRGAPGSPGS------PGPAGLSAPGKPGPAGIPGAMGPQGEPGLKGHPG 125
Query: 143 APDLPGPSS--APDLPGPS--SAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
P L GP +PGP + P+ GP+ AP LPG P PGPS P G S +
Sbjct: 126 IPGLQGPKGDRGVGVPGPQGHTGPEGAMGPTGAPGLPGIGK-PGKPGPSGEP---GKSGS 181
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
P G + GP PG P PG + AP LPG GP+ A
Sbjct: 182 PGRDGATGPMGPMGPKGHTGAPG-VGLPGKPGDNGAPGLPGSMGPKGQQGPAGA------ 234
Query: 258 SSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
+ AP +PG A G P PG + A GP+
Sbjct: 235 TGAPGVPGYGKPGANGEKGERGIPGSPGATGAKGEQGPTG 274
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 105/357 (29%), Positives = 127/357 (35%), Gaps = 96/357 (26%)
Query: 31 GPSSAPDLPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
G + AP L GP AP PG SAP PGP+ P GP P L G P L G
Sbjct: 72 GDTGAPGLQGPRGAPGSPGSPGPAGLSAPGKPGPAGIPGAMGPQGEPGLKGHPGIPGLQG 131
Query: 86 PSS--APDLPGPS--SAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDL------------ 128
P +PGP + P+ GP+ AP LPG P PGPS P
Sbjct: 132 PKGDRGVGVPGPQGHTGPEGAMGPTGAPGLPGIGK-PGKPGPSGEPGKSGSPGRDGATGP 190
Query: 129 ------PGPSSAPDL-----PGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPS--SAPD 172
G + AP + PG + AP LPG P G + AP +PG A
Sbjct: 191 MGPMGPKGHTGAPGVGLPGKPGDNGAPGLPGSMGPKGQQGPAGATGAPGVPGYGKPGANG 250
Query: 173 LPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPS------------------------- 204
G P PG + A GP + A GP+
Sbjct: 251 EKGERGIPGSPGATGAKGEQGPTGYTGATGATGPTGPAGPQGARGFPGGPGPAGAKGDTG 310
Query: 205 -SAPDLP----------------------GPSSAPDLPGPSSAPD---LPGPSSAPDLPG 238
+ P P GP+ A GP LPG S AP +PG
Sbjct: 311 ATGPQGPKGNKGDQGPQGFTGKQGYTGPAGPAGARGETGPQGEKGHMGLPGMSGAPGIPG 370
Query: 239 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
P+ G + P PG AP GP + P GP+ AP L G P PGP+
Sbjct: 371 PAGPKGHTGRAGEPGTPGSDGAPGARGP-TGPQ--GPAGAPGLKGHPGLPGAPGPAG 424
>gi|149029108|gb|EDL84402.1| procollagen, type I, alpha 2 [Rattus norvegicus]
Length = 669
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 100/284 (35%), Gaps = 38/284 (13%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E + GP A PG P G L G P G P PG + P
Sbjct: 158 RPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAQGVKGEPGAPGENGTP- 216
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---------------------- 120
G + A LPG PGP+ A G S P P
Sbjct: 217 --GQAGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGEL 273
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
GP P GP+ GP LPG S PG A L G A LPG + AP
Sbjct: 274 GPVGNPGPAGPA------GPRGEAGLPGLSGPVGPPGNPGANGLTGAKGATGLPGVAGAP 327
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
LPGP +PGP A GP PGP+ + G + PG + A PGPS
Sbjct: 328 GLPGPRG---IPGPVGAAGATGPRGLVGEPGPAGS---KGETGNKGEPGSAGAQGPPGPS 381
Query: 241 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
G P GP+ P L G + LPG + GP
Sbjct: 382 GEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLPGADGRAGVMGP 425
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 101/301 (33%), Gaps = 44/301 (14%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EP PG + GP+ P G P PG + GP A PG P G
Sbjct: 125 EPGEPGQTGPAGSRGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKG 184
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
L G P G P PG + PG + A LPG PGP+ A
Sbjct: 185 IRGHNGLDGLKGQPGAQGVKGEPGAPGENGT---PGQAGARGLPGERGRVGAPGPAGARG 241
Query: 146 LPGPSSAPDLP----------------------------------GPSSAPDLPGPSSAP 171
G S P P GP LPG S
Sbjct: 242 SDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEAGLPGLSGPV 300
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
PG A L G A LPG + AP LPGP +PGP A GP PGP+
Sbjct: 301 GPPGNPGANGLTGAKGATGLPGVAGAPGLPGPRG---IPGPVGAAGATGPRGLVGEPGPA 357
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
+ G + PG + A PGPS G P GP+ P L G + LP
Sbjct: 358 GS---KGETGNKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLP 414
Query: 292 G 292
G
Sbjct: 415 G 415
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 107/294 (36%), Gaps = 37/294 (12%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
GP+ P PG + GP+ P G P PG + GP A PG P
Sbjct: 121 GPAGEPGEPGQTGPAGSRGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLP 180
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
G L G P G P PG + PG + A LPG PGP+
Sbjct: 181 GFKGIRGHNGLDGLKGQPGAQGVKGEPGAPGENGT---PGQAGARGLPGERGRVGAPGPA 237
Query: 151 SAPDLPGPSSAPDLP-GPSSAPDLP------------GPSSAPDLPGPSSAPDLPGPSSA 197
A G S P P GP + P GP P GP+ GP
Sbjct: 238 GARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPA------GPRGE 290
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
LPG S PG A L G A LPG + AP LPGP +PGP A GP
Sbjct: 291 AGLPGLSGPVGPPGNPGANGLTGAKGATGLPGVAGAPGLPGPRG---IPGPVGAAGATGP 347
Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSP 311
PGP+ + G + PG + A PGPS GE G + SP
Sbjct: 348 RGLVGEPGPAGS---KGETGNKGEPGSAGAQGPPGPS--------GEEGKRGSP 390
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 113/401 (28%), Positives = 143/401 (35%), Gaps = 71/401 (17%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----------------- 66
P E PG + A LPG PGP+ A G S P P
Sbjct: 210 PGENGTPGQAGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPG 268
Query: 67 -----GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 121
GP P GP+ GP LPG S PG A L G A LPG
Sbjct: 269 PKGELGPVGNPGPAGPA------GPRGEAGLPGLSGPVGPPGNPGANGLTGAKGATGLPG 322
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
+ AP LPGP +PGP A GP PGP+ + G + PG + A
Sbjct: 323 VAGAPGLPGPRG---IPGPVGAAGATGPRGLVGEPGPAGS---KGETGNKGEPGSAGAQG 376
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
PGPS G P GP+ P L G + LPG + GP GP+
Sbjct: 377 PPGPSGEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLPGADGRAGVMGPPGNRGSTGPAG 436
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSTVL 298
+ GP+ PG P L GP P PG GP P + PGP
Sbjct: 437 ---VRGPNGDAGRPG---EPGLMGPRGLPGSPGNVGPAGKEGPVGLPGIDGRPGPIGPA- 489
Query: 299 GSYLGEAGHQ-----KSPKGLEPKPAQISFV-----LNIF--ANFHQTLRFLHFSCTSLV 346
GEAG+ K P G P + L +F A ++ L L S S
Sbjct: 490 -GPRGEAGNIGFPGPKGPSGELQVPTATMVLRALLDLRVFKVAKVNRALLVLQASRVS-- 546
Query: 347 VTRATVVKLPLYILTVEDDTV-------ILLFIETFIQLPQ 380
V ++PL L ++ V ++L ++ +PQ
Sbjct: 547 ----RVPQVPLEKLASQEKGVFPVNSVSLVLLVQEENVVPQ 583
>gi|392347136|ref|XP_003749739.1| PREDICTED: collagen alpha-2(I) chain-like isoform 2 [Rattus
norvegicus]
Length = 1395
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 104/278 (37%), Gaps = 21/278 (7%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E LPG S PG A L G A LPG + AP LPGP +PGP A G
Sbjct: 290 EAGLPGLSGPVGPPGNPGANGLTGAKGATGLPGVAGAPGLPGPRG---IPGPVGAAGATG 346
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P PGP+ + G + PG + A PGPS G P GP+ P
Sbjct: 347 PRGLVGEPGPAGSK---GETGNKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPAGPPG 403
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
L G + LPG + GP GP+ + GP+ PG P L GP
Sbjct: 404 LRGSPGSRGLPGADGRAGVMGPPGNRGSTGPAG---VRGPNGDAGRPG---EPGLMGPRG 457
Query: 206 APDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P PG GP P + PGP G + PGP GPS P
Sbjct: 458 LPGSPGNVGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPK------GPSGDPG 511
Query: 263 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGS 300
PG P L G AP G + A PGP G
Sbjct: 512 KPGEKGHPGLAGARGAPGPDGNNGAQGPPGPQGVQGGK 549
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 103/278 (37%), Gaps = 27/278 (9%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
L G A LPG + AP LPGP +PGP A GP PGP+ + G +
Sbjct: 311 LTGAKGATGLPGVAGAPGLPGPRG---IPGPVGAAGATGPRGLVGEPGPAGSK---GETG 364
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
PG + A PGPS G P GP+ P L G + LPG + G
Sbjct: 365 NKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLPGADGRAGVMG 424
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
P GP+ + GP+ PG P L GP P PG GP P
Sbjct: 425 PPGNRGSTGPAG---VRGPNGDAGRPG---EPGLMGPRGLPGSPGNVGPAGKEGPVGLPG 478
Query: 209 L---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
+ PGP G + PGP GPS P PG P L G AP G
Sbjct: 479 IDGRPGPIGPAGPRGEAGNIGFPGPK------GPSGDPGKPGEKGHPGLAGARGAPGPDG 532
Query: 266 PSSAPDLPGPSSAPDLP------GPSSAPDLPGPSSTV 297
+ A PGP GP LPGPS T
Sbjct: 533 NNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGTA 570
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 100/284 (35%), Gaps = 38/284 (13%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E + GP A PG P G L G P G P PG +
Sbjct: 158 RPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAQGVKGEPGAPGENG--- 214
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---------------------- 120
PG + A LPG PGP+ A G S P P
Sbjct: 215 TPGQAGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGEL 273
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
GP P GP+ GP LPG S PG A L G A LPG + AP
Sbjct: 274 GPVGNPGPAGPA------GPRGEAGLPGLSGPVGPPGNPGANGLTGAKGATGLPGVAGAP 327
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
LPGP +PGP A GP PGP+ + G + PG + A PGPS
Sbjct: 328 GLPGPRG---IPGPVGAAGATGPRGLVGEPGPAGS---KGETGNKGEPGSAGAQGPPGPS 381
Query: 241 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
G P GP+ P L G + LPG + GP
Sbjct: 382 GEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLPGADGRAGVMGP 425
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 96/256 (37%), Gaps = 21/256 (8%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
GP LPG S PG A L G A LPG + AP LPGP +PGP A
Sbjct: 286 GPRGEAGLPGLSGPVGPPGNPGANGLTGAKGATGLPGVAGAPGLPGPRG---IPGPVGAA 342
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 159
GP PGP+ + G + PG + A PGPS G P GP+
Sbjct: 343 GATGPRGLVGEPGPAGSK---GETGNKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPA 399
Query: 160 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
P L G + LPG + GP GP+ + GP+ PG P L
Sbjct: 400 GPPGLRGSPGSRGLPGADGRAGVMGPPGNRGSTGPAG---VRGPNGDAGRPG---EPGLM 453
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 276
GP P PG GP P + PGP G + PGP GPS
Sbjct: 454 GPRGLPGSPGNVGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPK------GPS 507
Query: 277 SAPDLPGPSSAPDLPG 292
P PG P L G
Sbjct: 508 GDPGKPGEKGHPGLAG 523
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 101/301 (33%), Gaps = 44/301 (14%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EP PG + GP+ P G P PG + GP A PG P G
Sbjct: 125 EPGEPGQTGPAGSRGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKG 184
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
L G P G P PG + PG + A LPG PGP+ A
Sbjct: 185 IRGHNGLDGLKGQPGAQGVKGEPGAPGENG---TPGQAGARGLPGERGRVGAPGPAGARG 241
Query: 146 LPGPSSAPDLP----------------------------------GPSSAPDLPGPSSAP 171
G S P P GP LPG S
Sbjct: 242 SDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEAGLPGLSGPV 300
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
PG A L G A LPG + AP LPGP +PGP A GP PGP+
Sbjct: 301 GPPGNPGANGLTGAKGATGLPGVAGAPGLPGPRG---IPGPVGAAGATGPRGLVGEPGPA 357
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
+ G + PG + A PGPS G P GP+ P L G + LP
Sbjct: 358 GS---KGETGNKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLP 414
Query: 292 G 292
G
Sbjct: 415 G 415
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 104/285 (36%), Gaps = 25/285 (8%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
GP A PGP GP+ P PG + GP+ P G P PG
Sbjct: 106 GPPGAVGAPGPQG---FQGPAGEPGEPGQTGPAGSRGPAGPPGKAGEDGHPGKPGRPGER 162
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
+ GP A PG P G L G P G P PG + PG +
Sbjct: 163 GVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAQGVKGEPGAPGENG---TPGQA 219
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----GPSSAPDLPGPSSAPDLPGPSSA 206
A LPG PGP+ A G S P P G + P PG GP
Sbjct: 220 GARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGN 278
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
P GP+ GP LPG S PG A L G A LPG + AP LPGP
Sbjct: 279 PGPAGPA------GPRGEAGLPGLSGPVGPPGNPGANGLTGAKGATGLPGVAGAPGLPGP 332
Query: 267 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSP 311
+PGP A GP PGP+ + GE G++ P
Sbjct: 333 RG---IPGPVGAAGATGPRGLVGEPGPAGS-----KGETGNKGEP 369
Score = 38.1 bits (87), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 99/273 (36%), Gaps = 41/273 (15%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----------------- 66
P E PG + A LPG PGP+ A G S P P
Sbjct: 210 PGENGTPGQAGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPG 268
Query: 67 -----GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 121
GP P GP+ GP LPG S PG A L G A LPG
Sbjct: 269 PKGELGPVGNPGPAGPA------GPRGEAGLPGLSGPVGPPGNPGANGLTGAKGATGLPG 322
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
+ AP LPGP +PGP A GP PGP+ + G + PG + A
Sbjct: 323 VAGAPGLPGPRG---IPGPVGAAGATGPRGLVGEPGPAGS---KGETGNKGEPGSAGAQG 376
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
PGPS G P GP+ P L G + LPG + GP GP+
Sbjct: 377 PPGPSGEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLPGADGRAGVMGPPGNRGSTGPAG 436
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
+ GP+ PG P L GP P PG
Sbjct: 437 ---VRGPNGDAGRPG---EPGLMGPRGLPGSPG 463
>gi|332226110|ref|XP_003262232.1| PREDICTED: collagen alpha-6(IV) chain isoform 4 [Nomascus
leucogenys]
Length = 1630
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 101/293 (34%), Gaps = 29/293 (9%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 657 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGNKGEPGSPGLVHLPELPGFPGPR 713
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 714 GEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 767
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
G S P L G P L GP G +P PG P PG S + G
Sbjct: 768 DKGFLGDSGLPGLKGVHGKPGLLGPK------GERGSPGTPGQVGQPGTPGSSGPYGIKG 821
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
S P AP PG S P G PG LPG P PG
Sbjct: 822 KSGLP------GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGLVGLKG 875
Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
PG LP PS G PG P +PG +PG + +
Sbjct: 876 SPGSPGVAGLPAPSGPKGEKGSVGFVGFPGIPGLPGIPGTRGLKGIPGSTGKM 928
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 93/263 (35%), Gaps = 32/263 (12%)
Query: 41 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 100
P P GPS P PG PGP + LPG P G P PG P+
Sbjct: 652 PCIIPGSYGPSGFPGTPG------FPGPKGSRGLPGTPGQPGSSGNKGEPGSPGLVHLPE 705
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPS 159
LPG PGP LPG P LPG LPG +P LPG A D+ G
Sbjct: 706 LPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAE 753
Query: 160 SA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGP 212
+ L G + G S P L G P L GP +P PG P PG
Sbjct: 754 NGAPGEQGLQGLTGDKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGS 813
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
S + G S P AP PG S P G PG LPG P
Sbjct: 814 SGPYGIKGKSGLP------GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGN 867
Query: 273 PGPSSAPDLPGPSSAPDLPGPSS 295
PG PG LP PS
Sbjct: 868 PGLVGLKGSPGSPGVAGLPAPSG 890
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 78/223 (34%), Gaps = 13/223 (5%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
+ V+ +P P G P L G S PG G +P LPG S P L
Sbjct: 1005 ITKGVSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLK 1064
Query: 76 GPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
G + PGP P G G PG G S LPG
Sbjct: 1065 GDNGQTAEISGSPGPKGQPGESGFKGTKGKDGLIGNIGFPGNKGEDGKVGVSGDVGLPGA 1124
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAP 189
P + G P LPG S GP +P L GP S +PGP+ LPGP
Sbjct: 1125 PGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGPSITGVPGPAG---LPGPKGEK 1181
Query: 190 DLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
PG AP PG G P L GP+ P PG S
Sbjct: 1182 GYPGIGIGAPGKPGLRGQ---KGDQGFPGLQGPAGLPGAPGIS 1221
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 56/156 (35%), Gaps = 11/156 (7%)
Query: 156 PGPSSAPDLPGPSSAPDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
PGP P + GP P L G P LPGP G P G P
Sbjct: 263 PGPKGFPGISGPPGFPGLGTTGEKGEKGIPGLPGPRGPMGSEGVHGPPGQQGKKGTLGFP 322
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
G + + G LPGP D+ G S P PG P L G L GPS
Sbjct: 323 GLNGFQGIEGQKGDIGLPGPDVFIDIDGAVISGNPGDPGVPGLPGLKGDEGIQGLRGPSG 382
Query: 269 APDLPGPSSAPDLPGPSSAPDLPG----PSSTVLGS 300
P LP S P GP P L G P T +G+
Sbjct: 383 VPGLPALSGVPGALGPQGFPGLKGDQGNPGRTTIGA 418
>gi|338715332|ref|XP_001496642.3| PREDICTED: collagen alpha-2(IV) chain [Equus caballus]
Length = 1701
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 94/270 (34%), Gaps = 22/270 (8%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLP------GPSSAPDLPGPSSAPDLPGPSSAP- 90
+PG S A PG P PG P P G A LPGP P L G
Sbjct: 695 IPGFSGADGPPGLKGLPGDPGREGYPGPPGFVGPRGSKGAVGLPGPDGQPGLTGLPGPVG 754
Query: 91 -----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
LPG + PGP LPG PG P G P +PG P
Sbjct: 755 PPGDRGLPGEALGA-YPGPQGDAGLPGQPGLKGPPGERGPPGFRGSQGMPGMPGLKGQPG 813
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
PGPS LPGP PG AP GP P PG P G +PGP
Sbjct: 814 FPGPSGQAGLPGPPGQHGFPG---APGQQGPLGLPGAPGFGGLPGDRGDPGDTGVPGPVG 870
Query: 206 APDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
+PG P L G +P G + P +PGP PG L G P
Sbjct: 871 MKGVPGDRGDPGLLGDRGHPGSPGFKGVAGMPGIPGPKGGRGSPGMDGFQGLLGLKGRPG 930
Query: 263 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG G P L G + P + G
Sbjct: 931 LPGSKGEAGFFG---VPGLKGLAGEPGVKG 957
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 70/201 (34%), Gaps = 12/201 (5%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
PGP LPG PG P G P +PG P PGPS LPGP
Sbjct: 769 YPGPQGDAGLPGQPGLKGPPGERGPPGFRGSQGMPGMPGLKGQPGFPGPSGQAGLPGPPG 828
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
PG AP GP P PG P G +PGP +PG P L G
Sbjct: 829 QHGFPG---APGQQGPLGLPGAPGFGGLPGDRGDPGDTGVPGPVGMKGVPGDRGDPGLLG 885
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
P PG G + P +PGP PG L G P LPG
Sbjct: 886 DRGHPGSPG------FKGVAGMPGIPGPKGGRGSPGMDGFQGLLGLKGRPGLPGSKGEAG 939
Query: 209 LPGPSSAPDLPGPSSAPDLPG 229
G P L G + P + G
Sbjct: 940 FFG---VPGLKGLAGEPGVKG 957
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 80/210 (38%), Gaps = 25/210 (11%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
DLPG +P L G PG G PG + A + GP P L G +
Sbjct: 1087 DLPG---SPGLKGERGLTGTPGLKGFFGEKGTEGEVGFPGITGAVGVQGP---PGLKGQT 1140
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
P L G PG P G S P +PG P PG + G S LP
Sbjct: 1141 GFPGLTGLHGPQGEPGRVGRPGDKGDSGWPGVPG---LPGFPG------IRGISGLHGLP 1191
Query: 148 GPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
G +P PG P PGP A D P A LPGP+ AP G AP GP
Sbjct: 1192 GTKGSPGSPGADIHGDPGFPGP--AGDRGDPGEANTLPGPAGAPGQKGERGAPGERGPVG 1249
Query: 206 APDLPG------PSSAPDLPGPSSAPDLPG 229
+P L G PS+ PG AP + G
Sbjct: 1250 SPGLRGFPGITPPSNISGSPGDKGAPGIFG 1279
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 60/148 (40%), Gaps = 10/148 (6%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P L G + P L G PG P G S P +PG P + G S LPG
Sbjct: 1134 PGLKGQTGFPGLTGLHGPQGEPGRVGRPGDKGDSGWPGVPGLPGFPGIRGISGLHGLPGT 1193
Query: 87 SSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
+P PG P PGP A D P A LPGP+ AP G AP GP +P
Sbjct: 1194 KGSPGSPGADIHGDPGFPGP--AGDRGDPGEANTLPGPAGAPGQKGERGAPGERGPVGSP 1251
Query: 145 DLPG------PSSAPDLPGPSSAPDLPG 166
L G PS+ PG AP + G
Sbjct: 1252 GLRGFPGITPPSNISGSPGDKGAPGIFG 1279
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 56/156 (35%), Gaps = 15/156 (9%)
Query: 26 EPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSS 79
+P PGPS LPGP P PG LPG LPG P +PGP
Sbjct: 811 QPGFPGPSGQAGLPGPPGQHGFPGAPGQQGPLGLPGAPGFGGLPGDRGDPGDTGVPGPVG 870
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+PG P L G P PG G + P +PGP PG L G
Sbjct: 871 MKGVPGDRGDPGLLGDRGHPGSPG------FKGVAGMPGIPGPKGGRGSPGMDGFQGLLG 924
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
P LPG G P L G + P + G
Sbjct: 925 LKGRPGLPGSKGEAGFFG---VPGLKGLAGEPGVKG 957
>gi|49794|emb|CAA79736.1| alpha-1 type-x collagen [Mus musculus]
Length = 680
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 76/199 (38%), Gaps = 23/199 (11%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
P +P +PG P PG + P P G P L G LPG A GP+ P
Sbjct: 272 PGQPGIPGEKGHPGSPGIAGPPGAPGFGKQGLPGLRGQRGPAGLPGAPGAKGERGPAGHP 331
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
PG +P GP +PG +PG L GP+ P G P L G +
Sbjct: 332 GEPGLPGSPGNMGPQGPKGIPGNHG---IPGAKGEIGLVGPAGPPGARGARGPPGLDGKT 388
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
P PG L GP P LPG P + G P L GP GP A +P
Sbjct: 389 GYPGEPG------LNGPKGNPGLPGQKGDPGVGG---TPGLRGPV------GPVGAKGVP 433
Query: 202 GPSSAPDLPGPSSAPDLPG 220
G + GP P +PG
Sbjct: 434 GHNGE---AGPRGEPGIPG 449
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 74/196 (37%), Gaps = 23/196 (11%)
Query: 81 PDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
P +PG P PG + P PG P L G LPG A GP+ P P
Sbjct: 275 PGIPGEKGHPGSPGIAGPPGAPGFGKQGLPGLRGQRGPAGLPGAPGAKGERGPAGHPGEP 334
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G +P GP +PG +PG L GP+ P G P L G + P
Sbjct: 335 GLPGSPGNMGPQGPKGIPGNHG---IPGAKGEIGLVGPAGPPGARGARGPPGLDGKTGYP 391
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
PG L GP P LPG P + G P L GP GP A +PG +
Sbjct: 392 GEPG------LNGPKGNPGLPGQKGDPGVGG---TPGLRGPV------GPVGAKGVPGHN 436
Query: 259 SAPDLPGPSSAPDLPG 274
GP P +PG
Sbjct: 437 GE---AGPRGEPGIPG 449
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 70/187 (37%), Gaps = 14/187 (7%)
Query: 108 PDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 165
P +PG P PG + P PG P L G LPG A GP+ P P
Sbjct: 275 PGIPGEKGHPGSPGIAGPPGAPGFGKQGLPGLRGQRGPAGLPGAPGAKGERGPAGHPGEP 334
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
G +P GP +PG +PG L GP+ P G P L G + P
Sbjct: 335 GLPGSPGNMGPQGPKGIPGNHG---IPGAKGEIGLVGPAGPPGARGARGPPGLDGKTGYP 391
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
PG L GP P LPG P + G GP A +PG + GP
Sbjct: 392 GEPG------LNGPKGNPGLPGQKGDPGVGGTPGLRGPVGPVGAKGVPGHNGE---AGPR 442
Query: 286 SAPDLPG 292
P +PG
Sbjct: 443 GEPGIPG 449
>gi|449275136|gb|EMC84098.1| Collagen alpha-1(IV) chain, partial [Columba livia]
Length = 1630
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 87/231 (37%), Gaps = 18/231 (7%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
LPG LPG +P PG G AP PG PG PG +
Sbjct: 977 LPGTPGEKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIG----FPGSPGEKGEPGRTG 1032
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
+P L G G P PGP +P + G +P G LPG S P L G
Sbjct: 1033 SPGLAGDKGEKGSAGIPGMPGAPGPKGSPGMAGFPGSPGRHGEKGEKGLPGLSGIPGLKG 1092
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSS 232
P +PGP+ + G +PG + A LPG P PG + G
Sbjct: 1093 EPGEPGIPGPAGSIGQKGEPGYDGIPGAAGAKGEQGLPG-RGLPGFPGAKGDKGVKGEVG 1151
Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP 282
P PG +P +PG P GP PGP + LPG P SA + P
Sbjct: 1152 FPGSPG---SPGIPGLKGEPGYAGP------PGPKGSQGLPGLPGSAMEGP 1193
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 72/182 (39%), Gaps = 14/182 (7%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P E PG + +P L G G P PGP +P + G +P G L
Sbjct: 1022 PGEKGEPGRTGSPGLAGDKGEKGSAGIPGMPGAPGPKGSPGMAGFPGSPGRHGEKGEKGL 1081
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGP 140
PG S P L G P +PGP+ + G +PG + A LPG P PG
Sbjct: 1082 PGLSGIPGLKGEPGEPGIPGPAGSIGQKGEPGYDGIPGAAGAKGEQGLPG-RGLPGFPGA 1140
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPD 199
+ G P PG +P +PG P GP PGP + LPG P SA +
Sbjct: 1141 KGDKGVKGEVGFPGSPG---SPGIPGLKGEPGYAGP------PGPKGSQGLPGLPGSAME 1191
Query: 200 LP 201
P
Sbjct: 1192 GP 1193
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 102/321 (31%), Gaps = 65/321 (20%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P +PG P LPGP L G + A G P LPG PGP LPG
Sbjct: 809 QPGVPGSVGLPGLPGPQGDVGLKGSAGAKGEMGVMGTPGLPG------TPGPVGDRGLPG 862
Query: 86 PSSAPDLPG---PSSAPDLPGPSSAPDLPG-PSSAPDL-----------------PGPSS 124
+ G P P + G LPG P + ++ G +
Sbjct: 863 EKGSQGFKGVVGPQGDPGVKGDKGEAGLPGKPGTMDNMDMVSLKGQKGDQGEKGDHGATG 922
Query: 125 APDLPGPSSAPDLPGPSSAPDLPG---------------------------PSSAPDLPG 157
L G P +PG P PG P PG
Sbjct: 923 EKGLQGEYGDPGIPGKDGEPGTPGHPGPKGDQGPPGYPGDPGLPGQKGSVGEMGLPGTPG 982
Query: 158 PSSAPDLPGPSSAPDLPGPSS------APDLPGPS-----SAPDLPGPSSAPDLPGPSSA 206
P +PG P PG AP PG PG + +P L G
Sbjct: 983 EKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIGFPGSPGEKGEPGRTGSPGLAGDKGE 1042
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
G P PGP +P + G +P G LPG S P L G P +PGP
Sbjct: 1043 KGSAGIPGMPGAPGPKGSPGMAGFPGSPGRHGEKGEKGLPGLSGIPGLKGEPGEPGIPGP 1102
Query: 267 SSAPDLPGPSSAPDLPGPSSA 287
+ + G +PG + A
Sbjct: 1103 AGSIGQKGEPGYDGIPGAAGA 1123
>gi|149032945|gb|EDL87786.1| rCG20008 [Rattus norvegicus]
Length = 465
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 77/201 (38%), Gaps = 19/201 (9%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
T P P +PG P AP + GP AP G P L G LPG
Sbjct: 265 ATGSPGRPGIPGEKGHP------GAPGIAGPPGAPGF-GKQGLPGLRGQRGPAGLPGAPG 317
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
A GP+ P PG + +P GP +PG +PG L GP+ P G
Sbjct: 318 AKGEQGPAGHPGEPGLTGSPGNMGPQGPKGIPGNHG---IPGTKGETGLVGPAGPPGARG 374
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
P L G + P PG L GP P LPGP P + G L GP+
Sbjct: 375 ARGPPGLDGKTGYPGDPG------LNGPKGNPGLPGPKGDPGVGGAPGLRGLVGPTGPKG 428
Query: 200 LPGPSSAPDLPGPSSAPDLPG 220
+PG + GP P +PG
Sbjct: 429 VPGHNGE---AGPRGEPGIPG 446
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 79/200 (39%), Gaps = 16/200 (8%)
Query: 39 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 98
PG + +P PG P G AP + GP AP G P L G LPG A
Sbjct: 263 PGATGSPGRPG---IPGEKGHPGAPGIAGPPGAPGF-GKQGLPGLRGQRGPAGLPGAPGA 318
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 158
GP+ P PG + +P GP +PG +PG L GP+ P G
Sbjct: 319 KGEQGPAGHPGEPGLTGSPGNMGPQGPKGIPGNHG---IPGTKGETGLVGPAGPPGARGA 375
Query: 159 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
P L G + P PG L GP P LPGP P + G L GP+ +
Sbjct: 376 RGPPGLDGKTGYPGDPG------LNGPKGNPGLPGPKGDPGVGGAPGLRGLVGPTGPKGV 429
Query: 219 PGPSSAPDLPGPSSAPDLPG 238
PG + GP P +PG
Sbjct: 430 PGHNGE---AGPRGEPGIPG 446
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 79/200 (39%), Gaps = 16/200 (8%)
Query: 48 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 107
PG + +P PG P G AP + GP AP G P L G LPG A
Sbjct: 263 PGATGSPGRPG---IPGEKGHPGAPGIAGPPGAPGF-GKQGLPGLRGQRGPAGLPGAPGA 318
Query: 108 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 167
GP+ P PG + +P GP +PG +PG L GP+ P G
Sbjct: 319 KGEQGPAGHPGEPGLTGSPGNMGPQGPKGIPGNHG---IPGTKGETGLVGPAGPPGARGA 375
Query: 168 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 227
P L G + P PG L GP P LPGP P + G L GP+ +
Sbjct: 376 RGPPGLDGKTGYPGDPG------LNGPKGNPGLPGPKGDPGVGGAPGLRGLVGPTGPKGV 429
Query: 228 PGPSSAPDLPGPSSAPDLPG 247
PG + GP P +PG
Sbjct: 430 PGHNGE---AGPRGEPGIPG 446
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 79/200 (39%), Gaps = 16/200 (8%)
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
PG + +P PG P G AP + GP AP G P L G LPG A
Sbjct: 263 PGATGSPGRPG---IPGEKGHPGAPGIAGPPGAPGF-GKQGLPGLRGQRGPAGLPGAPGA 318
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
GP+ P PG + +P GP +PG +PG L GP+ P G
Sbjct: 319 KGEQGPAGHPGEPGLTGSPGNMGPQGPKGIPGNHG---IPGTKGETGLVGPAGPPGARGA 375
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
P L G + P PG L GP P LPGP P + G L GP+ +
Sbjct: 376 RGPPGLDGKTGYPGDPG------LNGPKGNPGLPGPKGDPGVGGAPGLRGLVGPTGPKGV 429
Query: 264 PGPSSAPDLPGPSSAPDLPG 283
PG + GP P +PG
Sbjct: 430 PGHNGE---AGPRGEPGIPG 446
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 79/200 (39%), Gaps = 16/200 (8%)
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
PG + +P PG P G AP + GP AP G P L G LPG A
Sbjct: 263 PGATGSPGRPG---IPGEKGHPGAPGIAGPPGAPGF-GKQGLPGLRGQRGPAGLPGAPGA 318
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
GP+ P PG + +P GP +PG +PG L GP+ P G
Sbjct: 319 KGEQGPAGHPGEPGLTGSPGNMGPQGPKGIPGNHG---IPGTKGETGLVGPAGPPGARGA 375
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
P L G + P PG L GP P LPGP P + G L GP+ +
Sbjct: 376 RGPPGLDGKTGYPGDPG------LNGPKGNPGLPGPKGDPGVGGAPGLRGLVGPTGPKGV 429
Query: 273 PGPSSAPDLPGPSSAPDLPG 292
PG + GP P +PG
Sbjct: 430 PGHNGE---AGPRGEPGIPG 446
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 69/176 (39%), Gaps = 13/176 (7%)
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
PG + +P PG P G AP + GP AP G P L G LPG A
Sbjct: 263 PGATGSPGRPG---IPGEKGHPGAPGIAGPPGAPGF-GKQGLPGLRGQRGPAGLPGAPGA 318
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
GP+ P PG + +P GP +PG +PG L GP+ P G
Sbjct: 319 KGEQGPAGHPGEPGLTGSPGNMGPQGPKGIPGNHG---IPGTKGETGLVGPAGPPGARGA 375
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
P L G + P PG L GP P LPGP P + G L GP+
Sbjct: 376 RGPPGLDGKTGYPGDPG------LNGPKGNPGLPGPKGDPGVGGAPGLRGLVGPTG 425
>gi|154685229|ref|YP_001420390.1| GXT repeat-containing collagen-like protein [Bacillus
amyloliquefaciens FZB42]
gi|154351080|gb|ABS73159.1| collagen like triple helix protein with GXT repeats [Bacillus
amyloliquefaciens FZB42]
Length = 665
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 73/219 (33%), Gaps = 53/219 (24%)
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--------- 117
GP+ GP+ A GP+ A GP+ A GP+ A GP+
Sbjct: 309 GPTGVTGATGPTGATGATGPTGATGATGPTGATGATGPTGATGATGPTGVTGATGPTGAT 368
Query: 118 ----------------------------------------DLPGPSSAPDLPGPSSAPDL 137
D+ G + A GP+
Sbjct: 369 GATGPTGATGATGPTGATGATGPTGATGATGATGPTGITGDI-GSTGATGATGPTGVTGA 427
Query: 138 PGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
GP+ A + GP+ A GP+ A GP+ A GP+ A GP+ A GP
Sbjct: 428 TGPTGATGITGPTGATGDTGATGPTGATGDTGPTGATGATGPTGATGDTGPTGATGATGP 487
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 233
+ GP+ GP+ A GP+ A GP+ A
Sbjct: 488 TGVTGATGPTGVTGDTGPTGATGDTGPTGATGATGPTGA 526
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 73/219 (33%), Gaps = 53/219 (24%)
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--------- 126
GP+ GP+ A GP+ A GP+ A GP+ A GP+
Sbjct: 309 GPTGVTGATGPTGATGATGPTGATGATGPTGATGATGPTGATGATGPTGVTGATGPTGAT 368
Query: 127 ----------------------------------------DLPGPSSAPDLPGPSSAPDL 146
D+ G + A GP+
Sbjct: 369 GATGPTGATGATGPTGATGATGPTGATGATGATGPTGITGDI-GSTGATGATGPTGVTGA 427
Query: 147 PGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
GP+ A + GP+ A GP+ A GP+ A GP+ A GP+ A GP
Sbjct: 428 TGPTGATGITGPTGATGDTGATGPTGATGDTGPTGATGATGPTGATGDTGPTGATGATGP 487
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
+ GP+ GP+ A GP+ A GP+ A
Sbjct: 488 TGVTGATGPTGVTGDTGPTGATGDTGPTGATGATGPTGA 526
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 72/217 (33%), Gaps = 53/217 (24%)
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--------- 180
GP+ GP+ A GP+ A GP+ A GP+ A GP+
Sbjct: 309 GPTGVTGATGPTGATGATGPTGATGATGPTGATGATGPTGATGATGPTGVTGATGPTGAT 368
Query: 181 ----------------------------------------DLPGPSSAPDLPGPSSAPDL 200
D+ G + A GP+
Sbjct: 369 GATGPTGATGATGPTGATGATGPTGATGATGATGPTGITGDI-GSTGATGATGPTGVTGA 427
Query: 201 PGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
GP+ A + GP+ A GP+ A GP+ A GP+ A GP+ A GP
Sbjct: 428 TGPTGATGITGPTGATGDTGATGPTGATGDTGPTGATGATGPTGATGDTGPTGATGATGP 487
Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
+ GP+ GP+ A GP+ A GP+
Sbjct: 488 TGVTGATGPTGVTGDTGPTGATGDTGPTGATGATGPT 524
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
GP+ A G + A GP+ A GP+ GP+ A GP+ GP+ A
Sbjct: 165 GPTGATGATGSTGATGATGPTGATGDTGPTGVTGATGPTGATGATGPTGVTGDIGPTGAT 224
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPS 114
GP+ A GP+ A GP+
Sbjct: 225 GATGPTGATGATGPTGATGATGPT 248
>gi|359320882|ref|XP_003639449.1| PREDICTED: collagen alpha-1(X) chain-like [Canis lupus familiaris]
Length = 676
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 83/215 (38%), Gaps = 28/215 (13%)
Query: 60 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 119
+ P PG P +PG P PG + +P PG P LPG L G L
Sbjct: 265 TGKPGAPGAPGQPGIPGTKGHPGAPGIAGSPGAPG-FGKPGLPG------LKGQRGPIGL 317
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
PG A GP+ P PG + P GP +PG +PGP GP+
Sbjct: 318 PGSPGAKGEQGPAGHPGEPGLTGPPGNMGPQGPKGIPGNQG---IPGPKGEMGPVGPAGH 374
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
P G + L G P PG S GP LPGP L G +P LPGP
Sbjct: 375 PGAKGERGSSGLDGKPGYPGEPGSS------GPKGNSGLPGPKGDAGLRG---SPGLPGP 425
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
GP+ A PG + GP AP +PG
Sbjct: 426 V------GPAGAKGTPGHNGE---TGPRGAPGIPG 451
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 79/209 (37%), Gaps = 22/209 (10%)
Query: 21 TERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
T +P P PG P G AP + G AP G P L G LPG A
Sbjct: 265 TGKPGAPGAPGQPGIPGTKGHPGAPGIAGSPGAPGF-GKPGLPGLKGQRGPIGLPGSPGA 323
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
GP+ P PG + P GP +PG +PGP GP+ P G
Sbjct: 324 KGEQGPAGHPGEPGLTGPPGNMGPQGPKGIPGNQG---IPGPKGEMGPVGPAGHPGAKGE 380
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ L G P PG S GP LPGP L G +P LPGP
Sbjct: 381 RGSSGLDGKPGYPGEPGSS------GPKGNSGLPGPKGDAGLRG---SPGLPGPV----- 426
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
GP+ A PG + GP AP +PG
Sbjct: 427 -GPAGAKGTPGHNGE---TGPRGAPGIPG 451
>gi|332226108|ref|XP_003262231.1| PREDICTED: collagen alpha-6(IV) chain isoform 3 [Nomascus
leucogenys]
Length = 1663
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 101/293 (34%), Gaps = 29/293 (9%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 657 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGNKGEPGSPGLVHLPELPGFPGPR 713
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 714 GEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 767
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
G S P L G P L GP G +P PG P PG S + G
Sbjct: 768 DKGFLGDSGLPGLKGVHGKPGLLGPK------GERGSPGTPGQVGQPGTPGSSGPYGIKG 821
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
S P AP PG S P G PG LPG P PG
Sbjct: 822 KSGLP------GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGLVGLKG 875
Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
PG LP PS G PG P +PG +PG + +
Sbjct: 876 SPGSPGVAGLPAPSGPKGEKGSVGFVGFPGIPGLPGIPGTRGLKGIPGSTGKM 928
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 93/263 (35%), Gaps = 32/263 (12%)
Query: 41 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 100
P P GPS P PG PGP + LPG P G P PG P+
Sbjct: 652 PCIIPGSYGPSGFPGTPG------FPGPKGSRGLPGTPGQPGSSGNKGEPGSPGLVHLPE 705
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPS 159
LPG PGP LPG P LPG LPG +P LPG A D+ G
Sbjct: 706 LPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAE 753
Query: 160 SA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGP 212
+ L G + G S P L G P L GP +P PG P PG
Sbjct: 754 NGAPGEQGLQGLTGDKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGS 813
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
S + G S P AP PG S P G PG LPG P
Sbjct: 814 SGPYGIKGKSGLP------GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGN 867
Query: 273 PGPSSAPDLPGPSSAPDLPGPSS 295
PG PG LP PS
Sbjct: 868 PGLVGLKGSPGSPGVAGLPAPSG 890
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 56/156 (35%), Gaps = 11/156 (7%)
Query: 156 PGPSSAPDLPGPSSAPDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
PGP P + GP P L G P LPGP G P G P
Sbjct: 263 PGPKGFPGISGPPGFPGLGTTGEKGEKGIPGLPGPRGPMGSEGVHGPPGQQGKKGTLGFP 322
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
G + + G LPGP D+ G S P PG P L G L GPS
Sbjct: 323 GLNGFQGIEGQKGDIGLPGPDVFIDIDGAVISGNPGDPGVPGLPGLKGDEGIQGLRGPSG 382
Query: 269 APDLPGPSSAPDLPGPSSAPDLPG----PSSTVLGS 300
P LP S P GP P L G P T +G+
Sbjct: 383 VPGLPALSGVPGALGPQGFPGLKGDQGNPGRTTIGA 418
>gi|20380052|gb|AAH28178.1| COL3A1 protein [Homo sapiens]
Length = 1163
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 105/276 (38%), Gaps = 18/276 (6%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E LPGP P + GP+ P PG G + G + AP L G +
Sbjct: 238 RPGERGLPGP---PGIKGPAGIPGFPGMKGHRGFDGRNGEK---GETGAPGLKGENG--- 288
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG + AP GP AP G P LPG + A G + PGP P G
Sbjct: 289 LPGENGAPGPMGPRGAP---GERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPG 345
Query: 143 APDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
+P G PG + AP PGP GP P + G GP+ P
Sbjct: 346 SPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPG 405
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPG 256
PG A PGP+ A PG PG + A PGP +PG A G
Sbjct: 406 APGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDG 465
Query: 257 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+P PG + P G AP GP+ +PG
Sbjct: 466 KDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 55/145 (37%), Gaps = 18/145 (12%)
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
GP+ P PG A PGP+ A PG PG + A PGP G
Sbjct: 399 GPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPR------GERGEA 452
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
+PG A G +P PG + P G AP GP+ GP+ P GP+
Sbjct: 453 GIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPA------GPNGIPGEKGPA 506
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPG 229
PGP+ GP A PG
Sbjct: 507 GERGAPGPA------GPRGAAGEPG 525
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 55/145 (37%), Gaps = 18/145 (12%)
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
GP+ P PG A PGP+ A PG PG + A PGP G
Sbjct: 399 GPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPR------GERGEA 452
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
+PG A G +P PG + P G AP GP+ GP+ P GP+
Sbjct: 453 GIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPA------GPNGIPGEKGPA 506
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPG 256
PGP+ GP A PG
Sbjct: 507 GERGAPGPA------GPRGAAGEPG 525
>gi|126310355|ref|XP_001373089.1| PREDICTED: collagen alpha-1(IX) chain-like [Monodelphis domestica]
Length = 1052
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 91/257 (35%), Gaps = 17/257 (6%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSA 89
GP GP LPGP LPG +PG P S + P D+ G
Sbjct: 645 GPKGDRGAQGPRGINGLPGPKGENGLPGVDGRDGIPGMPGSKGEPGKPGPPGDI-GRQGL 703
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
P LPG PG G S AP +PG PG GP LPG
Sbjct: 704 PGLPGT------PGAKGVAGEKGNSGAPGVPGLMGNSGKPGQQGPQGEVGPRGPRGLPGS 757
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
GP +P GP +P LPG LPGP+ P L G + GP
Sbjct: 758 RGELGPSGPPGSPGKLGPLGSPGLPG------LPGPAGLPGLKGDRGSVGESGPKGEQGR 811
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
G G LPGP + PG P L GP + LPG + PGP
Sbjct: 812 VGEEGEAGGKGELGDIGLPGPKGSVGNPG---EPGLRGPEGSRGLPGVEGSRGPPGPRGM 868
Query: 270 PDLPGPSSAPDLPGPSS 286
G + P + GP+
Sbjct: 869 QGERGATGLPGIQGPAG 885
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 101/301 (33%), Gaps = 44/301 (14%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------------PSSAPDLPGP 77
PGP + G A G PGP P PG P GP
Sbjct: 596 PGPQGLRGITGIVGAKGDKGARGLDGEPGPQGLPGAPGDQGQRGPLGETGPKGDRGAQGP 655
Query: 78 SSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
LPGP LPG +PG P S + P D+ G P LPG A
Sbjct: 656 RGINGLPGPKGENGLPGVDGRDGIPGMPGSKGEPGKPGPPGDI-GRQGLPGLPGTPGAKG 714
Query: 137 L---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
+ G S AP +PG PG GP LPG GP +P G
Sbjct: 715 VAGEKGNSGAPGVPGLMGNSGKPGQQGPQGEVGPRGPRGLPGSRGELGPSGPPGSPGKLG 774
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP------------------D 235
P +P LPG LPGP+ P L G + GP
Sbjct: 775 PLGSPGLPG------LPGPAGLPGLKGDRGSVGESGPKGEQGRVGEEGEAGGKGELGDIG 828
Query: 236 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
LPGP + PG P L GP + LPG + PGP G + P + GP+
Sbjct: 829 LPGPKGSVGNPG---EPGLRGPEGSRGLPGVEGSRGPPGPRGMQGERGATGLPGIQGPAG 885
Query: 296 T 296
Sbjct: 886 R 886
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 88/267 (32%), Gaps = 17/267 (6%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGP 86
PG S P LPG G P G G A PGP + G
Sbjct: 548 PGRSGYPGLPGLRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGPQGLRGITGI 607
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSA 143
A G PGP P PG GP GP LPGP
Sbjct: 608 VGAKGDKGARGLDGEPGPQGLPGAPGDQGQRGPLGETGPKGDRGAQGPRGINGLPGPKGE 667
Query: 144 PDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPD 199
LPG +PG P S + P D+ G P LPG A + G S AP
Sbjct: 668 NGLPGVDGRDGIPGMPGSKGEPGKPGPPGDI-GRQGLPGLPGTPGAKGVAGEKGNSGAPG 726
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
+PG PG GP LPG GP +P GP +P LPG
Sbjct: 727 VPGLMGNSGKPGQQGPQGEVGPRGPRGLPGSRGELGPSGPPGSPGKLGPLGSPGLPG--- 783
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSS 286
LPGP+ P L G + GP
Sbjct: 784 ---LPGPAGLPGLKGDRGSVGESGPKG 807
>gi|268573586|ref|XP_002641770.1| C. briggsae CBR-EMB-9 protein [Caenorhabditis briggsae]
Length = 1759
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 91/268 (33%), Gaps = 23/268 (8%)
Query: 42 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA--- 98
+ P L G S P LPG LPG AP L G PG P PG
Sbjct: 1106 TGMPGLKGESGLPGLPGRQGQDGLPG---APGLEGECGEQGFPGAPGQPGYPGQQGREGE 1162
Query: 99 ---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSA 152
P +PG + L G P L G + PG AP PG P PG +
Sbjct: 1163 KGYPGMPGENGLSGLRGQDGLPGLKGENGLDGQPGYPGAPGQLGTPGDVGYPGAPGENGD 1222
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-----DLPGPSSAP 207
L G P L G P +PG GP P G AP PG +
Sbjct: 1223 NGLQGRDGQPGLRGEPGQPGMPGLQGRDGQTGPIGPPGDDGYPGAPGQDTYGQPGQAGQD 1282
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLP 264
PG P PG + P PG P LPG P PG + G LP
Sbjct: 1283 GYPGLDGLPGSPGLNGEPGTPGQYGMPGLPGMPGEPGQTGYPGERGLVGIDGKRGHDGLP 1342
Query: 265 GPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G AP L G P + G LPG
Sbjct: 1343 G---APGLDGVIGVPGVEGDCGEDGLPG 1367
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 92/273 (33%), Gaps = 18/273 (6%)
Query: 14 DYLPSTVTERPL--EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 71
D LP E L +P PG PG P PG + L G P L G
Sbjct: 1181 DGLPGLKGENGLDGQPGYPGAPGQLGTPGDVGYPGAPGENGDNGLQGRDGQPGLRGEPGQ 1240
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
P +PG GP P G P PG + PG + PG P PG
Sbjct: 1241 PGMPGLQGRDGQTGPIGPP---GDDGYPGAPGQDTY-GQPGQAGQDGYPGLDGLPGSPGL 1296
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
+ P PG P LPG +PG PG + G LPG AP L
Sbjct: 1297 NGEPGTPGQYGMPGLPG------MPGEPGQTGYPGERGLVGIDGKRGHDGLPG---APGL 1347
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
G P + G LPG P PG + P G P G S PG
Sbjct: 1348 DGVIGVPGVEGDCGEDGLPG---LPGAPGSNGYPGERGLPGVPGQQGRSGDNGYPGQPGQ 1404
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
P L GP PG +PG LPGP
Sbjct: 1405 PGLKGPRGDDGYPGRDGLDGMPGRGGPQGLPGP 1437
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 95/276 (34%), Gaps = 22/276 (7%)
Query: 18 STVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-----PGPSSAP 72
+ + R +P L G P +PG GP P G AP PG +
Sbjct: 1223 NGLQGRDGQPGLRGEPGQPGMPGLQGRDGQTGPIGPPGDDGYPGAPGQDTYGQPGQAGQD 1282
Query: 73 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
PG P PG + P PG P LPG +PG PG + G
Sbjct: 1283 GYPGLDGLPGSPGLNGEPGTPGQYGMPGLPG------MPGEPGQTGYPGERGLVGIDGKR 1336
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
LPG AP L G P + G LPG P PG + P G P
Sbjct: 1337 GHDGLPG---APGLDGVIGVPGVEGDCGEDGLPG---LPGAPGSNGYPGERGLPGVPGQQ 1390
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL--PGPSS 250
G S PG P L GP PG +PG LPGP + PG S
Sbjct: 1391 GRSGDNGYPGQPGQPGLKGPRGDDGYPGRDGLDGMPGRGGPQGLPGPLAMEIRNPPGLSG 1450
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
PG P LPG + LPGP PG S
Sbjct: 1451 DNGYPGEKGYPGLPGDNG---LPGPPGKAGYPGASG 1483
Score = 38.1 bits (87), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 104/316 (32%), Gaps = 59/316 (18%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLP---- 66
P+ +T P EP +PG PGP G P P PG P +
Sbjct: 502 PAGMTGLPGEPGMPGRIGMDGYPGPPGNNGERGEDCGYCPDGLPGNPGDVGYPGMNGYPG 561
Query: 67 --------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----------PSSA 107
G P LPG AP G + +P LPG P + G P+
Sbjct: 562 PPGPNGDHGDCGMPGLPGKPGAPGADGINGSPGLPGIPGYPGMKGEDGEIIGPMENPAGI 621
Query: 108 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 167
P L G P LPG LPG LPG PG P L G G
Sbjct: 622 PGLKGDRGLPGLPGRQGNDGLPG------LPGSPGQDGFPGLRGEPGLSGIDGKRGRQGS 675
Query: 168 SSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP----SSAPDLPGP 221
P L GP S P PG G + P LPG +P P + PG
Sbjct: 676 LGIPGLQGPQGDSYPGQPGTPGFKGEAGANGLPGLPGAQGPRGIPAPLRIVNQVAGQPGV 735
Query: 222 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
P LPG A LPG LPGP GP P PG LPG
Sbjct: 736 DGMPGLPGDRGADGLPG------LPGPV------GPDGYPGTPGERGMDGLPG------F 777
Query: 282 PGPSSAPDLPGPSSTV 297
PG P + G V
Sbjct: 778 PGLHGEPGMRGQQGEV 793
>gi|359320778|ref|XP_532042.4| PREDICTED: collagen alpha-1(XXVII) chain [Canis lupus familiaris]
Length = 1878
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 70/206 (33%), Gaps = 9/206 (4%)
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGP 149
PG S L G LPG S P G PGP+ P PGP +P G
Sbjct: 702 PGLSPGKALDGAKGDVGLPGLSGNPGPVGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGY 761
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
LPGP P G LPG P G P +PG PG P
Sbjct: 762 PGRQGLPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGRPG---FPGD 818
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGP 266
G P L G LPGP P L G A PGP L G P L G
Sbjct: 819 FGERGPPGLDGNPGELGLPGPRGVPGLIGDMGALGPIGYPGPKGVKGLMGNVGQPGLKGD 878
Query: 267 SSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG S P G + LPG
Sbjct: 879 KGEQGVPGVSGDPGFQGDKGSQGLPG 904
>gi|358340745|dbj|GAA31679.2| collagen alpha-1(IV) chain [Clonorchis sinensis]
Length = 1720
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 91/271 (33%), Gaps = 44/271 (16%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 91
P P +PGP P PGP+ P L G L GP PG P G
Sbjct: 489 PDGRPGIPGPKGFPGQPGPAGLPGLDGAPGQKGLVGPQGKDGQPG---FPGEKGEKGERG 545
Query: 92 LPGPSSAPDLPGP-----SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSA 143
GP PGP ++ P+ P +PG GP P +PGP
Sbjct: 546 SDGPRGMKGEPGPVEFVNATVPEA--PRGEIGMPGRMGVLGETGPKGYPGPKGIPGPKGL 603
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----PSSAPDLP---GPSSAPDLPGPS 195
PGP+ LPG P PG P +PG +P LP GP A PG
Sbjct: 604 RGEPGPAG---LPGFHGTPGKPGQRGEPGIPGRVFDARKGSPGLPGRDGPKGAKGEPGED 660
Query: 196 S-----------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
PGP PG P PG G P +PG P
Sbjct: 661 GEHIYLDQLYEYVKGEPGPKG---YPGEKGLPGFPGEQG---REGEKGLPGMPGKQGKPG 714
Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 275
PGP +PGP P GP PGP
Sbjct: 715 YPGPVG---MPGPDGDPGYAGPKGVKGQPGP 742
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 96/276 (34%), Gaps = 24/276 (8%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
GP P LPG + GP GP PGP P G P PGP +P
Sbjct: 918 GPKGEPGLPGRIGPKGVTGPPGEDGAAGPRGDTGDPGPVGPPGFRGSKGIPGKPGPKGSP 977
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGP-----SSAPDLPGPSS 151
PG L G P + G P PG A +PGP G
Sbjct: 978 GQPG-RIGEALKGEKGFPGIKGIKGQPGKQGDPGIMGAKGVPGPRGFGTKGHKGEKGFKG 1036
Query: 152 APDLPGPSSAPDLPGP-SSAPDL--PGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSS 205
P + GP P L G A D+ PGP P LPG P G P PGP
Sbjct: 1037 EPGIQGPKGLPGLDGKQGRAGDMGPPGPVGEKGDPGLPGSVGRPGRNGAVGEPGEPGPRG 1096
Query: 206 APDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLP------GPSSAPDLPGPSSAPDLPG 256
L GPS +PG + A +PG A P GP L G P + G
Sbjct: 1097 PKGLSGPSGEKGPKGMPGITFAEPIPGTKGAKGEPGFVGQKGPKGVQGLRGNDGVPGIRG 1156
Query: 257 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
PS L G P + G P GP +P L G
Sbjct: 1157 PSGPAGLKGIKGFPGVKGLKGIPGPRGPDGSPGLKG 1192
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 69/196 (35%), Gaps = 35/196 (17%)
Query: 13 ADYLPSTVTERPL-EPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGP 68
+++ +TV E P E +PG GP P +PGP PGP+ LPG
Sbjct: 559 VEFVNATVPEAPRGEIGMPGRMGVLGETGPKGYPGPKGIPGPKGLRGEPGPAG---LPGF 615
Query: 69 SSAPDLPGPSSAPDLPG-----PSSAPDLP---GPSSAPDLPGPSS-----------APD 109
P PG P +PG +P LP GP A PG
Sbjct: 616 HGTPGKPGQRGEPGIPGRVFDARKGSPGLPGRDGPKGAKGEPGEDGEHIYLDQLYEYVKG 675
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
PGP PG P PG G P +PG P PGP +PGP
Sbjct: 676 EPGPKG---YPGEKGLPGFPGEQG---REGEKGLPGMPGKQGKPGYPGPVG---MPGPDG 726
Query: 170 APDLPGPSSAPDLPGP 185
P GP PGP
Sbjct: 727 DPGYAGPKGVKGQPGP 742
Score = 38.5 bits (88), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 102/331 (30%), Gaps = 67/331 (20%)
Query: 26 EPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLP------GPSSAPDLPG 76
EP PGP L GPS +PG + A +PG A P GP L G
Sbjct: 1088 EPGEPGPRGPKGLSGPSGEKGPKGMPGITFAEPIPGTKGAKGEPGFVGQKGPKGVQGLRG 1147
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
P + GPS L G P + G P GP +P L G P G
Sbjct: 1148 NDGVPGIRGPSGPAGLKGIKGFPGVKGLKGIPGPRGPDGSPGLKGNRGPPGEKGNLGPEG 1207
Query: 137 LPGPSSAP-----------------DLPGPSSAPDLPGPSSAP---DLPGPSSAP--DLP 174
LPG P LPGP G + P PGP P DLP
Sbjct: 1208 LPGDRGEPGDRGLSVQSPVGEKGEAGLPGPMGPQGAKGEAGKPGDRGDPGPQGDPGADLP 1267
Query: 175 G-------------------------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
G + P PG + P + GP PGP
Sbjct: 1268 GAPGEKGLPGPPGPPGIRGPPGPKGLKGTFPGRPGATGLPGVEGPKGFQGEPGPKG---Y 1324
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP------SSAPDLPGPSSAPDLPGPSSAPDL 263
PG P + G L G P PG P PG G L
Sbjct: 1325 PGSIGRPGMKGMQGEKGLRGLDGKPGRPGKPGEKGMRGQPGRPGEKGREGQKGDMGPVGL 1384
Query: 264 PGPSSAPDL--PGPSSAPDLPGPSSAPDLPG 292
PGP P + PG PGP+ P PG
Sbjct: 1385 PGPEGIPGIGEPGLEGEKGYPGPAGRPGEPG 1415
>gi|47226958|emb|CAG05850.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1438
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 75/234 (32%), Gaps = 18/234 (7%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
LPG G P L G G + P PG LPGP G
Sbjct: 864 LPGEKGVRGFEGMPGKPGLEGIKGDKGSIGRTGQPGRPGEKGVSGLPGPEGKRGFDGRPG 923
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPD 163
+ GP P G + +PG S P +PG LPG G +P
Sbjct: 924 EGGMQGPPGTPGQKGEAGVDGIPGSSGDRGDPGVPGRG----LPGQPGVNGTKGEKGSPG 979
Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-----PGPSSAPDLPGPSSAPDL 218
PG P +PG +PG + G P + G P PG + L
Sbjct: 980 FPGTPGHPGVPGTKGDKGIPGTAGPQGETGERGLPGISLEGPKGERGQPGQPGEPGSQGL 1039
Query: 219 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
PGP GP G P PG S G + P PGPS P +
Sbjct: 1040 PGPPGVQGRHGPKGE---TGEQGIPGFPGESGQ---KGETGVPGFPGPSGLPGI 1087
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 84/245 (34%), Gaps = 29/245 (11%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
RP E + GP P G + +PG S P +PG LPG G
Sbjct: 921 RPGEGGMQGPPGTPGQKGEAGVDGIPGSSGDRGDPGVPGRG----LPGQPGVNGTKGEKG 976
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-----PGPSSAPDLPGPSSA 134
+P PG P +PG +PG + G P + G P PG +
Sbjct: 977 SPGFPGTPGHPGVPGTKGDKGIPGTAGPQGETGERGLPGISLEGPKGERGQPGQPGEPGS 1036
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
LPGP GP G P PG S G + P PGPS LPG
Sbjct: 1037 QGLPGPPGVQGRHGPKGE---TGEQGIPGFPGESGQ---KGETGVPGFPGPSG---LPGI 1087
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
G P PG P GP + + G + +P PG LPGP
Sbjct: 1088 DGQKGEQGQQGVPGFPGNDGPPGPLGPHTF--IKGEAGSPGNPG------LPGPQGPAGF 1139
Query: 255 PGPSS 259
PGP
Sbjct: 1140 PGPKG 1144
>gi|301096410|ref|XP_002897302.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262107186|gb|EEY65238.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 412
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 124/232 (53%), Gaps = 21/232 (9%)
Query: 33 SSAPDLPGP-SSAPDLPGP-SSAPDLPGP-SSAPDLPGP-SSAPDLPGP-SSAPDLPGP- 86
+S PD P P +S PD P P +S PD P +S PD P P +S PD P P +S PD P P
Sbjct: 113 TSLPDTPCPVTSLPDTPCPVTSLPDTPCSVTSLPDTPCPVTSLPDTPCPVTSLPDTPCPL 172
Query: 87 SSAPDLPGP-SSAPDLPGPS-SAPDLPGP-SSAPDLPGPSSA-PDLPGP-SSAPDLPGP- 140
+S PD P P +S P+ P P S PD P P +S PD P P +A D P P +S PD P P
Sbjct: 173 TSLPDTPCPVTSLPETPCPVMSLPDTPCPVTSLPDTPCPVTALLDTPCPVTSLPDTPCPV 232
Query: 141 SSAPDLPGP-SSAPDLPGP-SSAPD---LPGP-SSAPDLPGPSSAPDLPGPSSAPDLPGP 194
+S PD P P +S PD P P +S PD P P +S PD P+ P P +A P P
Sbjct: 233 TSLPDTPCPVTSLPDTPCPITSKPDAETTPCPVTSKPDTVAPTPCPVTSLPDTAAPTPCP 292
Query: 195 -SSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAP 243
+S P+ P+ P P +S P+ P+ A P P +S P+ P+S P
Sbjct: 293 VTSLPETTAPTPCPVTSLPETSLPETSAPTPAATTPCPVTSLPETEAPTSTP 344
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 116/219 (52%), Gaps = 20/219 (9%)
Query: 27 PDLPGP-SSAPDLPGP-SSAPDLPGP-SSAPDLPGP-SSAPDLPGP-SSAPDLPGP-SSA 80
PD P P +S PD P +S PD P P +S PD P P +S PD P P +S PD P P +S
Sbjct: 126 PDTPCPVTSLPDTPCSVTSLPDTPCPVTSLPDTPCPVTSLPDTPCPLTSLPDTPCPVTSL 185
Query: 81 PDLPGPS-SAPDLPGP-SSAPDLPGPSSA-PDLPGP-SSAPDLPGP-SSAPDLPGP-SSA 134
P+ P P S PD P P +S PD P P +A D P P +S PD P P +S PD P P +S
Sbjct: 186 PETPCPVMSLPDTPCPVTSLPDTPCPVTALLDTPCPVTSLPDTPCPVTSLPDTPCPVTSL 245
Query: 135 PDLPGP-SSAPD---LPGP-SSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSA 188
PD P P +S PD P P +S PD P+ P P +A P P +S P+ P+
Sbjct: 246 PDTPCPITSKPDAETTPCPVTSKPDTVAPTPCPVTSLPDTAAPTPCPVTSLPETTAPTPC 305
Query: 189 PDLPGP-SSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAP 225
P P +S P+ P+ A P P +S P+ P+S P
Sbjct: 306 PVTSLPETSLPETSAPTPAATTPCPVTSLPETEAPTSTP 344
>gi|47229446|emb|CAF99434.1| unnamed protein product [Tetraodon nigroviridis]
Length = 641
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 113/323 (34%), Gaps = 42/323 (13%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P +PG P L G S P LPG PG P +PG LPG P PG
Sbjct: 195 KPGIPGIRGPPGLKGSSGQPGLPGIGK----PGLKGLPGIPGLKGDQGLPGNQGQPGEPG 250
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLPGP--- 140
LPGP PG P PGP PG +P PG P L GP
Sbjct: 251 APGLQGLPGPVGI-GKPGVDGQPGAPGPFGPKGEPGVRGSPGFPGSPGYGKPGLIGPKGD 309
Query: 141 ------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
+ GP+ P G P L GP LPG L G
Sbjct: 310 KGHGGLPGLPGDKGEEGMMGPAGEPGNNGQPGPPGLQGPMG---LPGKHGLQGLKGELGP 366
Query: 189 PDLP------GPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
P G A +PG + P LPGP+ + PGP G P L GP
Sbjct: 367 QGPPGLPGLRGDQGASGIPGKNGIPGEKGLPGPNGSIGKPGPKGEAGHIGLPGNPGLMGP 426
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLG 299
S PG P G S P L GP GP PGP L GP
Sbjct: 427 SGPKGEPGFIGTPGPRGQSGIPGLQGPM------GPMGPQGAPGPKGESGLIGPPGIAKQ 480
Query: 300 SYLGEAGHQKSPKGLEPKPAQIS 322
GE G Q P+G +P PA ++
Sbjct: 481 GEKGEMGPQ-GPQG-KPGPAGLN 501
>gi|392347134|ref|XP_003749738.1| PREDICTED: collagen alpha-2(I) chain-like isoform 1 [Rattus
norvegicus]
Length = 1372
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 104/278 (37%), Gaps = 21/278 (7%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E LPG S PG A L G A LPG + AP LPGP +PGP A G
Sbjct: 290 EAGLPGLSGPVGPPGNPGANGLTGAKGATGLPGVAGAPGLPGPRG---IPGPVGAAGATG 346
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P PGP+ + G + PG + A PGPS G P GP+ P
Sbjct: 347 PRGLVGEPGPAGSK---GETGNKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPAGPPG 403
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
L G + LPG + GP GP+ + GP+ PG P L GP
Sbjct: 404 LRGSPGSRGLPGADGRAGVMGPPGNRGSTGPAG---VRGPNGDAGRPG---EPGLMGPRG 457
Query: 206 APDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P PG GP P + PGP G + PGP GPS P
Sbjct: 458 LPGSPGNVGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPK------GPSGDPG 511
Query: 263 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGS 300
PG P L G AP G + A PGP G
Sbjct: 512 KPGEKGHPGLAGARGAPGPDGNNGAQGPPGPQGVQGGK 549
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 103/278 (37%), Gaps = 27/278 (9%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
L G A LPG + AP LPGP +PGP A GP PGP+ + G +
Sbjct: 311 LTGAKGATGLPGVAGAPGLPGPRG---IPGPVGAAGATGPRGLVGEPGPAGSK---GETG 364
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
PG + A PGPS G P GP+ P L G + LPG + G
Sbjct: 365 NKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLPGADGRAGVMG 424
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
P GP+ + GP+ PG P L GP P PG GP P
Sbjct: 425 PPGNRGSTGPAG---VRGPNGDAGRPG---EPGLMGPRGLPGSPGNVGPAGKEGPVGLPG 478
Query: 209 L---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
+ PGP G + PGP GPS P PG P L G AP G
Sbjct: 479 IDGRPGPIGPAGPRGEAGNIGFPGPK------GPSGDPGKPGEKGHPGLAGARGAPGPDG 532
Query: 266 PSSAPDLPGPSSAPDLP------GPSSAPDLPGPSSTV 297
+ A PGP GP LPGPS T
Sbjct: 533 NNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGTA 570
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 100/284 (35%), Gaps = 38/284 (13%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E + GP A PG P G L G P G P PG +
Sbjct: 158 RPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAQGVKGEPGAPGENG--- 214
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---------------------- 120
PG + A LPG PGP+ A G S P P
Sbjct: 215 TPGQAGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGEL 273
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
GP P GP+ GP LPG S PG A L G A LPG + AP
Sbjct: 274 GPVGNPGPAGPA------GPRGEAGLPGLSGPVGPPGNPGANGLTGAKGATGLPGVAGAP 327
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
LPGP +PGP A GP PGP+ + G + PG + A PGPS
Sbjct: 328 GLPGPRG---IPGPVGAAGATGPRGLVGEPGPAGS---KGETGNKGEPGSAGAQGPPGPS 381
Query: 241 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
G P GP+ P L G + LPG + GP
Sbjct: 382 GEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLPGADGRAGVMGP 425
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 96/256 (37%), Gaps = 21/256 (8%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
GP LPG S PG A L G A LPG + AP LPGP +PGP A
Sbjct: 286 GPRGEAGLPGLSGPVGPPGNPGANGLTGAKGATGLPGVAGAPGLPGPRG---IPGPVGAA 342
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 159
GP PGP+ + G + PG + A PGPS G P GP+
Sbjct: 343 GATGPRGLVGEPGPAGSK---GETGNKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPA 399
Query: 160 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
P L G + LPG + GP GP+ + GP+ PG P L
Sbjct: 400 GPPGLRGSPGSRGLPGADGRAGVMGPPGNRGSTGPAG---VRGPNGDAGRPG---EPGLM 453
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 276
GP P PG GP P + PGP G + PGP GPS
Sbjct: 454 GPRGLPGSPGNVGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPK------GPS 507
Query: 277 SAPDLPGPSSAPDLPG 292
P PG P L G
Sbjct: 508 GDPGKPGEKGHPGLAG 523
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 101/301 (33%), Gaps = 44/301 (14%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EP PG + GP+ P G P PG + GP A PG P G
Sbjct: 125 EPGEPGQTGPAGSRGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKG 184
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
L G P G P PG + PG + A LPG PGP+ A
Sbjct: 185 IRGHNGLDGLKGQPGAQGVKGEPGAPGENG---TPGQAGARGLPGERGRVGAPGPAGARG 241
Query: 146 LPGPSSAPDLP----------------------------------GPSSAPDLPGPSSAP 171
G S P P GP LPG S
Sbjct: 242 SDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEAGLPGLSGPV 300
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
PG A L G A LPG + AP LPGP +PGP A GP PGP+
Sbjct: 301 GPPGNPGANGLTGAKGATGLPGVAGAPGLPGPRG---IPGPVGAAGATGPRGLVGEPGPA 357
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
+ G + PG + A PGPS G P GP+ P L G + LP
Sbjct: 358 GS---KGETGNKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLP 414
Query: 292 G 292
G
Sbjct: 415 G 415
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 107/309 (34%), Gaps = 52/309 (16%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
GP A PGP GP+ P PG + GP+ P G P PG
Sbjct: 106 GPPGAVGAPGPQG---FQGPAGEPGEPGQTGPAGSRGPAGPPGKAGEDGHPGKPGRPGER 162
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
+ GP A PG P G L G P G P PG + PG +
Sbjct: 163 GVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAQGVKGEPGAPGENG---TPGQA 219
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----------------------GPSSA 188
A LPG PGP+ A G S P P GP
Sbjct: 220 GARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGN 278
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
P GP+ GP LPG S PG A L G A LPG + AP LPGP
Sbjct: 279 PGPAGPA------GPRGEAGLPGLSGPVGPPGNPGANGLTGAKGATGLPGVAGAPGLPGP 332
Query: 249 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSTVLGSYL 302
+PGP A GP PGP+ + PG + A PGPS
Sbjct: 333 RG---IPGPVGAAGATGPRGLVGEPGPAGSKGETGNKGEPGSAGAQGPPGPS-------- 381
Query: 303 GEAGHQKSP 311
GE G + SP
Sbjct: 382 GEEGKRGSP 390
>gi|16758080|ref|NP_445808.1| collagen alpha-2(I) chain precursor [Rattus norvegicus]
gi|19855071|sp|P02466.3|CO1A2_RAT RecName: Full=Collagen alpha-2(I) chain; AltName: Full=Alpha-2 type
I collagen; Flags: Precursor
gi|5305687|gb|AAD41775.1|AF121217_1 pro-alpha-2(I) collagen [Rattus norvegicus]
Length = 1372
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 104/278 (37%), Gaps = 21/278 (7%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E LPG S PG A L G A LPG + AP LPGP +PGP A G
Sbjct: 290 EAGLPGLSGPVGPPGNPGANGLTGAKGATGLPGVAGAPGLPGPRG---IPGPVGAAGATG 346
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P PGP+ + G + PG + A PGPS G P GP+ P
Sbjct: 347 PRGLVGEPGPAGSK---GETGNKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPAGPPG 403
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
L G + LPG + GP GP+ + GP+ PG P L GP
Sbjct: 404 LRGSPGSRGLPGADGRAGVMGPPGNRGSTGPAG---VRGPNGDAGRPG---EPGLMGPRG 457
Query: 206 APDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P PG GP P + PGP G + PGP GPS P
Sbjct: 458 LPGSPGNVGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPK------GPSGDPG 511
Query: 263 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGS 300
PG P L G AP G + A PGP G
Sbjct: 512 KPGEKGHPGLAGARGAPGPDGNNGAQGPPGPQGVQGGK 549
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 103/278 (37%), Gaps = 27/278 (9%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
L G A LPG + AP LPGP +PGP A GP PGP+ + G +
Sbjct: 311 LTGAKGATGLPGVAGAPGLPGPRG---IPGPVGAAGATGPRGLVGEPGPAGSK---GETG 364
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
PG + A PGPS G P GP+ P L G + LPG + G
Sbjct: 365 NKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLPGADGRAGVMG 424
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
P GP+ + GP+ PG P L GP P PG GP P
Sbjct: 425 PPGNRGSTGPAG---VRGPNGDAGRPG---EPGLMGPRGLPGSPGNVGPAGKEGPVGLPG 478
Query: 209 L---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
+ PGP G + PGP GPS P PG P L G AP G
Sbjct: 479 IDGRPGPIGPAGPRGEAGNIGFPGPK------GPSGDPGKPGEKGHPGLAGARGAPGPDG 532
Query: 266 PSSAPDLPGPSSAPDLP------GPSSAPDLPGPSSTV 297
+ A PGP GP LPGPS T
Sbjct: 533 NNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGTA 570
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 100/284 (35%), Gaps = 38/284 (13%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E + GP A PG P G L G P G P PG +
Sbjct: 158 RPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAQGVKGEPGAPGENG--- 214
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---------------------- 120
PG + A LPG PGP+ A G S P P
Sbjct: 215 TPGQAGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGEL 273
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
GP P GP+ GP LPG S PG A L G A LPG + AP
Sbjct: 274 GPVGNPGPAGPA------GPRGEAGLPGLSGPVGPPGNPGANGLTGAKGATGLPGVAGAP 327
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
LPGP +PGP A GP PGP+ + G + PG + A PGPS
Sbjct: 328 GLPGPRG---IPGPVGAAGATGPRGLVGEPGPAGS---KGETGNKGEPGSAGAQGPPGPS 381
Query: 241 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
G P GP+ P L G + LPG + GP
Sbjct: 382 GEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLPGADGRAGVMGP 425
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 96/256 (37%), Gaps = 21/256 (8%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
GP LPG S PG A L G A LPG + AP LPGP +PGP A
Sbjct: 286 GPRGEAGLPGLSGPVGPPGNPGANGLTGAKGATGLPGVAGAPGLPGPRG---IPGPVGAA 342
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 159
GP PGP+ + G + PG + A PGPS G P GP+
Sbjct: 343 GATGPRGLVGEPGPAGSK---GETGNKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPA 399
Query: 160 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
P L G + LPG + GP GP+ + GP+ PG P L
Sbjct: 400 GPPGLRGSPGSRGLPGADGRAGVMGPPGNRGSTGPAG---VRGPNGDAGRPG---EPGLM 453
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 276
GP P PG GP P + PGP G + PGP GPS
Sbjct: 454 GPRGLPGSPGNVGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPK------GPS 507
Query: 277 SAPDLPGPSSAPDLPG 292
P PG P L G
Sbjct: 508 GDPGKPGEKGHPGLAG 523
Score = 41.6 bits (96), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 101/301 (33%), Gaps = 44/301 (14%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EP PG + GP+ P G P PG + GP A PG P G
Sbjct: 125 EPGEPGQTGPAGSRGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKG 184
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
L G P G P PG + PG + A LPG PGP+ A
Sbjct: 185 IRGHNGLDGLKGQPGAQGVKGEPGAPGENG---TPGQAGARGLPGERGRVGAPGPAGARG 241
Query: 146 LPGPSSAPDLP----------------------------------GPSSAPDLPGPSSAP 171
G S P P GP LPG S
Sbjct: 242 SDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEAGLPGLSGPV 300
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
PG A L G A LPG + AP LPGP +PGP A GP PGP+
Sbjct: 301 GPPGNPGANGLTGAKGATGLPGVAGAPGLPGPRG---IPGPVGAAGATGPRGLVGEPGPA 357
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
+ G + PG + A PGPS G P GP+ P L G + LP
Sbjct: 358 GS---KGETGNKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLP 414
Query: 292 G 292
G
Sbjct: 415 G 415
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 107/309 (34%), Gaps = 52/309 (16%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
GP A PGP GP+ P PG + GP+ P G P PG
Sbjct: 106 GPPGAVGAPGPQG---FQGPAGEPGEPGQTGPAGSRGPAGPPGKAGEDGHPGKPGRPGER 162
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
+ GP A PG P G L G P G P PG + PG +
Sbjct: 163 GVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAQGVKGEPGAPGENG---TPGQA 219
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----------------------GPSSA 188
A LPG PGP+ A G S P P GP
Sbjct: 220 GARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGN 278
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
P GP+ GP LPG S PG A L G A LPG + AP LPGP
Sbjct: 279 PGPAGPA------GPRGEAGLPGLSGPVGPPGNPGANGLTGAKGATGLPGVAGAPGLPGP 332
Query: 249 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSTVLGSYL 302
+PGP A GP PGP+ + PG + A PGPS
Sbjct: 333 RG---IPGPVGAAGATGPRGLVGEPGPAGSKGETGNKGEPGSAGAQGPPGPS-------- 381
Query: 303 GEAGHQKSP 311
GE G + SP
Sbjct: 382 GEEGKRGSP 390
>gi|453232015|ref|NP_001022662.2| Protein EMB-9, isoform a [Caenorhabditis elegans]
gi|413002798|emb|CAA81584.5| Protein EMB-9, isoform a [Caenorhabditis elegans]
Length = 1759
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 76/214 (35%), Gaps = 8/214 (3%)
Query: 36 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 95
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1321 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1374
Query: 96 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 155
+ P G P G S PG P + GP PG LPG L
Sbjct: 1375 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1434
Query: 156 PGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 213
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1435 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1494
Query: 214 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
P G G + P LPG P PG
Sbjct: 1495 GMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1528
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 76/214 (35%), Gaps = 8/214 (3%)
Query: 54 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 113
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1321 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1374
Query: 114 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 173
+ P G P G S PG P + GP PG LPG L
Sbjct: 1375 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1434
Query: 174 PGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1435 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1494
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
P G G + P LPG P PG
Sbjct: 1495 GMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1528
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 76/214 (35%), Gaps = 8/214 (3%)
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1321 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1374
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
+ P G P G S PG P + GP PG LPG L
Sbjct: 1375 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1434
Query: 192 PGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1435 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1494
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
P G G + P LPG P PG
Sbjct: 1495 GMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1528
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 78/216 (36%), Gaps = 9/216 (4%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
LP ER L P L G LPG AP +PG P L G PG AP P
Sbjct: 1320 LPGYPGERGL-PGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAP 1372
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G + P G P G S PG P + GP PG LPG
Sbjct: 1373 GSNGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGRE 1432
Query: 136 DLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
LPGP + + PG PG P LPG + PG + P PG P PG
Sbjct: 1433 GLPGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPG 1492
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
S P G G + P LPG P PG
Sbjct: 1493 LSGMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1528
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 97/296 (32%), Gaps = 47/296 (15%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDL--PGPSSA 80
P + G P +PG + P L G P L G + PG P SA L PG
Sbjct: 1154 PGQQGREGEKGYPGIPGENGLPGLRGQDGQPGLKGENGLDGQPGYPGSAGQLGTPGDVGY 1213
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-------------------PSS-APDLP 120
P PG + G P L G S P PG P + D+
Sbjct: 1214 PGAPGENGDNGNQGRDGQPGLRGESGQPGQPGLPGRDGQPGPVGPPGDDGYPGAPGQDIY 1273
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------------PDLPGPS 168
GP PG + PG P PG + P PG P PG
Sbjct: 1274 GP------PGQAGQDGYPGLDGLPGAPGLNGEPGSPGQYGMPGLPGGPGESGLPGYPGER 1327
Query: 169 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
P L G LPG AP +PG P L G PG AP PG + P
Sbjct: 1328 GLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGSNGYPGER 1381
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
G P G S PG P + GP PG LPG LPGP
Sbjct: 1382 GLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGLPGP 1437
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 65/182 (35%), Gaps = 8/182 (4%)
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1321 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1374
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
+ P G P G S PG P + GP PG LPG L
Sbjct: 1375 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1434
Query: 237 PGPSS--APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1435 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1494
Query: 295 ST 296
Sbjct: 1495 GM 1496
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 71/205 (34%), Gaps = 11/205 (5%)
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1321 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1374
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
+ P G P G S PG P + GP PG LPG L
Sbjct: 1375 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1434
Query: 210 PGPSS--APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
PGP + + PG PG P LPG + PG + P PG PGP
Sbjct: 1435 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDG---YPGPP 1491
Query: 268 SAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG G + PG
Sbjct: 1492 GLSGMPGHGGDQGFQGAAGRTGNPG 1516
Score = 38.1 bits (87), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 53/146 (36%), Gaps = 9/146 (6%)
Query: 114 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 173
+ P L G S P LPG +PG P L G PG P PG
Sbjct: 1106 TGMPGLKGESGLPGLPGRQGNDGIPG---QPGLEGECGEDGFPGSPGQPGYPGQQG---R 1159
Query: 174 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDL--PGPSSAPDLPGP 230
G P +PG + P L G P L G + PG P SA L PG P PG
Sbjct: 1160 EGEKGYPGIPGENGLPGLRGQDGQPGLKGENGLDGQPGYPGSAGQLGTPGDVGYPGAPGE 1219
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ G P L G S P PG
Sbjct: 1220 NGDNGNQGRDGQPGLRGESGQPGQPG 1245
Score = 38.1 bits (87), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 53/146 (36%), Gaps = 9/146 (6%)
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
+ P L G S P LPG +PG P L G PG P PG
Sbjct: 1106 TGMPGLKGESGLPGLPGRQGNDGIPG---QPGLEGECGEDGFPGSPGQPGYPGQQG---R 1159
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDL--PGPSSAPDLPGP 248
G P +PG + P L G P L G + PG P SA L PG P PG
Sbjct: 1160 EGEKGYPGIPGENGLPGLRGQDGQPGLKGENGLDGQPGYPGSAGQLGTPGDVGYPGAPGE 1219
Query: 249 SSAPDLPGPSSAPDLPGPSSAPDLPG 274
+ G P L G S P PG
Sbjct: 1220 NGDNGNQGRDGQPGLRGESGQPGQPG 1245
>gi|205831680|sp|P17139.4|CO4A1_CAEEL RecName: Full=Collagen alpha-1(IV) chain; Flags: Precursor
Length = 1759
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 76/214 (35%), Gaps = 8/214 (3%)
Query: 36 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 95
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1321 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1374
Query: 96 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 155
+ P G P G S PG P + GP PG LPG L
Sbjct: 1375 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1434
Query: 156 PGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 213
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1435 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1494
Query: 214 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
P G G + P LPG P PG
Sbjct: 1495 GMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1528
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 76/214 (35%), Gaps = 8/214 (3%)
Query: 54 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 113
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1321 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1374
Query: 114 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 173
+ P G P G S PG P + GP PG LPG L
Sbjct: 1375 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1434
Query: 174 PGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1435 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1494
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
P G G + P LPG P PG
Sbjct: 1495 GMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1528
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 76/214 (35%), Gaps = 8/214 (3%)
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1321 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1374
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
+ P G P G S PG P + GP PG LPG L
Sbjct: 1375 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1434
Query: 192 PGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1435 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1494
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
P G G + P LPG P PG
Sbjct: 1495 GMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1528
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 78/216 (36%), Gaps = 9/216 (4%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
LP ER L P L G LPG AP +PG P L G PG AP P
Sbjct: 1320 LPGYPGERGL-PGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAP 1372
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G + P G P G S PG P + GP PG LPG
Sbjct: 1373 GSNGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGRE 1432
Query: 136 DLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
LPGP + + PG PG P LPG + PG + P PG P PG
Sbjct: 1433 GLPGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPG 1492
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
S P G G + P LPG P PG
Sbjct: 1493 LSGMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1528
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 97/296 (32%), Gaps = 47/296 (15%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDL--PGPSSA 80
P + G P +PG + P L G P L G + PG P SA L PG
Sbjct: 1154 PGQQGREGEKGYPGIPGENGLPGLRGQDGQPGLKGENGLDGQPGYPGSAGQLGTPGDVGY 1213
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-------------------PSS-APDLP 120
P PG + G P L G S P PG P + D+
Sbjct: 1214 PGAPGENGDNGNQGRDGQPGLRGESGQPGQPGLPGRDGQPGPVGPPGDDGYPGAPGQDIY 1273
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------------PDLPGPS 168
GP PG + PG P PG + P PG P PG
Sbjct: 1274 GP------PGQAGQDGYPGLDGLPGAPGLNGEPGSPGQYGMPGLPGGPGESGLPGYPGER 1327
Query: 169 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
P L G LPG AP +PG P L G PG AP PG + P
Sbjct: 1328 GLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGSNGYPGER 1381
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
G P G S PG P + GP PG LPG LPGP
Sbjct: 1382 GLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGLPGP 1437
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 65/182 (35%), Gaps = 8/182 (4%)
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1321 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1374
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
+ P G P G S PG P + GP PG LPG L
Sbjct: 1375 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1434
Query: 237 PGPSS--APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1435 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1494
Query: 295 ST 296
Sbjct: 1495 GM 1496
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 71/205 (34%), Gaps = 11/205 (5%)
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1321 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1374
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
+ P G P G S PG P + GP PG LPG L
Sbjct: 1375 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1434
Query: 210 PGPSS--APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
PGP + + PG PG P LPG + PG + P PG PGP
Sbjct: 1435 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDG---YPGPP 1491
Query: 268 SAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG G + PG
Sbjct: 1492 GLSGMPGHGGDQGFQGAAGRTGNPG 1516
>gi|348563739|ref|XP_003467664.1| PREDICTED: collagen alpha-6(IV) chain-like [Cavia porcellus]
Length = 1662
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 95/280 (33%), Gaps = 43/280 (15%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
GP P LPGP PG PG A GP+ +P GP P + G P
Sbjct: 463 GPRGEPGLPGPQGVRGFPGLKGTRGDPGSEGAQ---GPAGSPGSFGPQGLPGVKGKKGEP 519
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--APDLPGPSSAPDLP- 147
S P G PG AP G S P LPG PG P LP
Sbjct: 520 TFSMESGMPGEKGDRGLQGFPGIKGAPGKDGISGLPGLPGLQGDGGKGFPGEKGLPGLPG 579
Query: 148 -----GPSSAPDL--------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
GP+ P + G P G +P + P P GPS
Sbjct: 580 GKGHSGPTGPPGIGLPGLPGPQGPPGEKGIDGFPGQQGLRGSPGITLPCIIPGSYGPSGL 639
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
P +PG LPGP LPG P PG PG S LP P GP
Sbjct: 640 PGIPG------LPGPKGVRGLPG---TPGQPGSHGNKGEPGSSGLLHLP---ELPGFSGP 687
Query: 249 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
LPG PG + L G + +P LPG AP
Sbjct: 688 RGEKGLPG------FPGLAGKDGLAGKAGSPGLPGSKGAP 721
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 83/221 (37%), Gaps = 20/221 (9%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS + P P LPGP LPG P G P G P+LPG P
Sbjct: 632 GSYGPSGL---PGIPGLPGPKGVRGLPGTPGQPGSHGNKGEPGSSGLLHLPELPGFSGPR 688
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DL----PGPSSAPDLPGPSS 124
LPG PG + L G + +P LPG AP D+ G S A L G
Sbjct: 689 GEKGLPG------FPGLAGKDGLAGKAGSPGLPGSKGAPGDILAAENGASGAQGLQGLPG 742
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
+PG S P G P L GP +PG PGP + L G L G
Sbjct: 743 DRGVPGDSGPPGPKGLHGQPGLLGPKGDQGIPGTPGQVGQPGPPGSSGLHGIKGKSGLLG 802
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
AP LPG S P G LPG + LPG P
Sbjct: 803 ---APGLPGISGYPGKKGQKGEKGLPGSTRKRGLPGMKGLP 840
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 97/256 (37%), Gaps = 33/256 (12%)
Query: 63 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG----PSSAPD 118
P G +P + P P GPS P +PG LPGP LPG P S +
Sbjct: 613 PGQQGLRGSPGITLPCIIPGSYGPSGLPGIPG------LPGPKGVRGLPGTPGQPGSHGN 666
Query: 119 L--PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
PG S LP P GP LPG PG + L G + +P LPG
Sbjct: 667 KGEPGSSGLLHLP---ELPGFSGPRGEKGLPG------FPGLAGKDGLAGKAGSPGLPGS 717
Query: 177 SSAP-DL----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
AP D+ G S A L G +PG S P G P L GP +PG
Sbjct: 718 KGAPGDILAAENGASGAQGLQGLPGDRGVPGDSGPPGPKGLHGQPGLLGPKGDQGIPGTP 777
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
PGP + L G L G AP LPG S P G LPG + LP
Sbjct: 778 GQVGQPGPPGSSGLHGIKGKSGLLG---APGLPGISGYPGKKGQKGEKGLPGSTRKRGLP 834
Query: 292 G----PSSTVLGSYLG 303
G P S L +LG
Sbjct: 835 GMKGLPGSLGLTGFLG 850
>gi|395732594|ref|XP_002812713.2| PREDICTED: collagen alpha-1(III) chain isoform 1 [Pongo abelii]
Length = 1394
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 105/276 (38%), Gaps = 18/276 (6%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E LPGP P + GP+ P PG G + G + AP L G +
Sbjct: 238 RPGERGLPGP---PGIKGPAGIPGFPGMKGHRGFDGRNGEK---GETGAPGLKGENG--- 288
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG + AP GP AP G P LPG + A G + PGP P G
Sbjct: 289 LPGENGAPGPMGPRGAP---GERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPG 345
Query: 143 APDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
+P G PG + AP PGP GP P + G GP+ P
Sbjct: 346 SPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPG 405
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPG 256
PG A PGP+ A PG PG + A PGP +PG A G
Sbjct: 406 APGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDG 465
Query: 257 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+P PG + P G AP GP+ +PG
Sbjct: 466 KDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501
Score = 38.1 bits (87), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 55/145 (37%), Gaps = 18/145 (12%)
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
GP+ P PG A PGP+ A PG PG + A PGP G
Sbjct: 399 GPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPR------GERGEA 452
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
+PG A G +P PG + P G AP GP+ GP+ P GP+
Sbjct: 453 GIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPA------GPNGIPGEKGPA 506
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPG 229
PGP+ GP A PG
Sbjct: 507 GERGAPGPA------GPRGAAGEPG 525
>gi|6676|emb|CAA40299.1| alpha1(IV) collagen [Caenorhabditis elegans]
Length = 1758
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 76/214 (35%), Gaps = 8/214 (3%)
Query: 36 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 95
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1320 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1373
Query: 96 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 155
+ P G P G S PG P + GP PG LPG L
Sbjct: 1374 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1433
Query: 156 PGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 213
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1434 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1493
Query: 214 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
P G G + P LPG P PG
Sbjct: 1494 GMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1527
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 76/214 (35%), Gaps = 8/214 (3%)
Query: 54 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 113
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1320 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1373
Query: 114 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 173
+ P G P G S PG P + GP PG LPG L
Sbjct: 1374 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1433
Query: 174 PGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1434 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1493
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
P G G + P LPG P PG
Sbjct: 1494 GMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1527
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 76/214 (35%), Gaps = 8/214 (3%)
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1320 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1373
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
+ P G P G S PG P + GP PG LPG L
Sbjct: 1374 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1433
Query: 192 PGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1434 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1493
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
P G G + P LPG P PG
Sbjct: 1494 GMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1527
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 78/216 (36%), Gaps = 9/216 (4%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
LP ER L P L G LPG AP +PG P L G PG AP P
Sbjct: 1319 LPGYPGERGL-PGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAP 1371
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G + P G P G S PG P + GP PG LPG
Sbjct: 1372 GSNGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGRE 1431
Query: 136 DLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
LPGP + + PG PG P LPG + PG + P PG P PG
Sbjct: 1432 GLPGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPG 1491
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
S P G G + P LPG P PG
Sbjct: 1492 LSGMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1527
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 97/296 (32%), Gaps = 47/296 (15%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDL--PGPSSA 80
P + G P +PG + P L G P L G + PG P SA L PG
Sbjct: 1153 PGQQGREGEKGYPGIPGENGLPGLRGQDGQPGLKGENGLDGQPGYPGSAGQLGTPGDVGY 1212
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-------------------PSS-APDLP 120
P PG + G P L G S P PG P + D+
Sbjct: 1213 PGAPGENGDNGNQGRDGQPGLRGESGQPGQPGLPGRDGQPGPVGPPGDDGYPGAPGQDIY 1272
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------------PDLPGPS 168
GP PG + PG P PG + P PG P PG
Sbjct: 1273 GP------PGQAGQDGYPGLDGLPGAPGLNGEPGSPGQYGMPGLPGGPGESGLPGYPGER 1326
Query: 169 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
P L G LPG AP +PG P L G PG AP PG + P
Sbjct: 1327 GLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGSNGYPGER 1380
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
G P G S PG P + GP PG LPG LPGP
Sbjct: 1381 GLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGLPGP 1436
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 65/182 (35%), Gaps = 8/182 (4%)
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1320 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1373
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
+ P G P G S PG P + GP PG LPG L
Sbjct: 1374 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1433
Query: 237 PGPSS--APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1434 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1493
Query: 295 ST 296
Sbjct: 1494 GM 1495
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 71/205 (34%), Gaps = 11/205 (5%)
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1320 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1373
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
+ P G P G S PG P + GP PG LPG L
Sbjct: 1374 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1433
Query: 210 PGPSS--APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
PGP + + PG PG P LPG + PG + P PG PGP
Sbjct: 1434 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDG---YPGPP 1490
Query: 268 SAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG G + PG
Sbjct: 1491 GLSGMPGHGGDQGFQGAAGRTGNPG 1515
>gi|449483545|ref|XP_002190448.2| PREDICTED: collagen alpha-1(IV) chain [Taeniopygia guttata]
Length = 1653
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 84/233 (36%), Gaps = 21/233 (9%)
Query: 63 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 122
P PG P +PG P PG G AP PG PG PG
Sbjct: 1003 PGTPGEKGLPGVPGSPGTPGFPGQKGE---KGDKGAPGFPGIG----FPGAPGEKGEPGR 1055
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
+ +P + G G P PGP +P + G P G LPG S P L
Sbjct: 1056 TGSPGVSGDKGEKGSAGIPGMPGAPGPKGSPGMAGFPGNPGRHGEKGEKGLPGLSGIPGL 1115
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGP 239
G P +PGP+ G +PG + A LPG LPG A G
Sbjct: 1116 KGEPGEPGVPGPAGTIGQKGEPGYDGIPGAAGAKGEQGLPGRG----LPGFPGAKGDKGA 1171
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP 291
PG +P +PG P GP PGP + LPG P SA + P
Sbjct: 1172 KGEVGFPGSPGSPGIPGLKGEPGYAGP------PGPKGSQGLPGLPGSAIEGP 1218
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 98/320 (30%), Gaps = 60/320 (18%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
P +P +PG P LPGP A L G P + G P PGP PG +
Sbjct: 833 PGQPGVPGSVGLPGLPGPQGAVGLKGSTGPKGEMGVMGTPGLPGTPGPVGDRGFPGEKGS 892
Query: 81 PDLPG---PSSAPDLPGPSSAPDLPGPSSAPDL-----------------PGPSSAPDLP 120
G P P + G LPG D+ G + +
Sbjct: 893 QGFKGVIGPQGEPGVKGDKGEAGLPGKPGEMDMDMVSLKGQKGDQGEKGDHGAAGEKGIR 952
Query: 121 GPSSAPDLPGPSSAPDLPG---------------------------PSSAPDLPGPSSAP 153
G P +PG P PG P PG P
Sbjct: 953 GDYGEPGIPGRDGEPGTPGQPGPKGDQGPPGYPGDPGVPGQKGSVGEMGLPGTPGEKGLP 1012
Query: 154 DLPGPSSAPDLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
+PG P PG AP PG PG PG + +P + G
Sbjct: 1013 GVPGSPGTPGFPGQKGEKGDKGAPGFPGIG----FPGAPGEKGEPGRTGSPGVSGDKGEK 1068
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
G P PGP +P + G P G LPG S P L G P +PGP+
Sbjct: 1069 GSAGIPGMPGAPGPKGSPGMAGFPGNPGRHGEKGEKGLPGLSGIPGLKGEPGEPGVPGPA 1128
Query: 268 SAPDLPGPSSAPDLPGPSSA 287
G +PG + A
Sbjct: 1129 GTIGQKGEPGYDGIPGAAGA 1148
>gi|226437587|ref|NP_034062.3| collagen alpha-2(IV) chain preproprotein [Mus musculus]
gi|126302536|sp|P08122.4|CO4A2_MOUSE RecName: Full=Collagen alpha-2(IV) chain; Contains: RecName:
Full=Canstatin; Flags: Precursor
gi|148690112|gb|EDL22059.1| procollagen, type IV, alpha 2, isoform CRA_a [Mus musculus]
gi|187951841|gb|AAI38041.1| Collagen, type IV, alpha 2 [Mus musculus]
Length = 1707
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 91/282 (32%), Gaps = 24/282 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPG LPG + AP G P +PG P PGPS P GP PG
Sbjct: 784 LPGQPGLKGLPGETGAPGFRGSQGMPGMPGLKGQPGFPGPSGQPGQSGPPGQHGFPG--- 840
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P GP P PG P G P +PGP L G + G P PG
Sbjct: 841 TPGREGPLGQPGSPGLGGLPGDRGEPGDPGVPGPVGMKGLSGDRGDAGMSGERGHPGSPG 900
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
+PG P G +P + G L G P G + +PG P
Sbjct: 901 FKGMAGMPG---IPGQKGDRGSPGMDGFQGMLGLKGRQGFPGTKGEAGFFGVPGLKGLPG 957
Query: 209 LPGPSS-----------------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
PG D+ G G L G P +PG S
Sbjct: 958 EPGVKGNRGDRGPPGPPPLILPGMKDIKGEKGDEGPMGLKGYLGLKGIQGMPGVPGVSGF 1017
Query: 252 PDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P LPG P + G P PG P + GP PG
Sbjct: 1018 PGLPGRPGFIKGVKGDIGVPGTPGLPGFPGVSGPPGITGFPG 1059
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 96/258 (37%), Gaps = 25/258 (9%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
DLPG +P L G +PG G + PG + + G +P L G +
Sbjct: 1093 DLPG---SPGLKGERGITGIPGLKGFFGEKGAAGDIGFPGITG---MAGAQGSPGLKGQT 1146
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
P L G PG P G P +PG P + G S LPG P P
Sbjct: 1147 GFPGLTGLQGPQGEPGRIGIPGDKGDFGWPGVPGLPGFPGIRGISGLHGLPGTKGFPGSP 1206
Query: 148 GPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--- 202
G + D PGP+ D A LPGP P G P GP+ +P L G
Sbjct: 1207 GVDAHGDPGFPGPTG--DRGDRGEANTLPGPVGVPGQKGERGTPGERGPAGSPGLQGFPG 1264
Query: 203 ---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPG 256
PS+ PG AP + G L G P PGP++ P + G S A PG
Sbjct: 1265 ISPPSNISGSPGDVGAPGIFG------LQGYQGPPGPPGPNALPGIKGDEGSSGAAGFPG 1318
Query: 257 PSSAPDLPGPSSAPDLPG 274
PGP P + G
Sbjct: 1319 QKGWVGDPGPQGQPGVLG 1336
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 83/234 (35%), Gaps = 17/234 (7%)
Query: 65 LPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 123
L G P +PG S P LPG P + G P PG P + GP PG +
Sbjct: 1002 LKGIQGMPGVPGVSGFPGLPGRPGFIKGVKGDIGVPGTPGLPGFPGVSGP------PGIT 1055
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
P G PG + GP+ D DLPG +P L G +P
Sbjct: 1056 GFPGFTGSRGEKGTPGVAGVFGETGPTG--DFGDIGDTVDLPG---SPGLKGERGITGIP 1110
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
G G + PG + + G +P L G + P L G PG P
Sbjct: 1111 GLKGFFGEKGAAGDIGFPGITG---MAGAQGSPGLKGQTGFPGLTGLQGPQGEPGRIGIP 1167
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSS 295
G P +PG P + G S LPG P PG + D PGP+
Sbjct: 1168 GDKGDFGWPGVPGLPGFPGIRGISGLHGLPGTKGFPGSPGVDAHGDPGFPGPTG 1221
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 97/279 (34%), Gaps = 35/279 (12%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+ G +P L G + P L G PG P G P +PG P + G S
Sbjct: 1133 MAGAQGSPGLKGQTGFPGLTGLQGPQGEPGRIGIPGDKGDFGWPGVPGLPGFPGIRGISG 1192
Query: 89 APDLPGPSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
LPG P PG + D PGP+ D A LPGP P G P
Sbjct: 1193 LHGLPGTKGFPGSPGVDAHGDPGFPGPTG--DRGDRGEANTLPGPVGVPGQKGERGTPGE 1250
Query: 147 PGPSSAPDLPG------PSSAPDLPGPSSAPDLPG------------PSSAPDLP---GP 185
GP+ +P L G PS+ PG AP + G P++ P + G
Sbjct: 1251 RGPAGSPGLQGFPGISPPSNISGSPGDVGAPGIFGLQGYQGPPGPPGPNALPGIKGDEGS 1310
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS----- 240
S A PG PGP P + G G GPS A GP
Sbjct: 1311 SGAAGFPGQKGWVGDPGPQGQPGVLGLPGEKGPKGEQGFMGNTGPSGAVGDRGPKGPKGD 1370
Query: 241 -SAPDLPGPSSAPDLPG----PSSAPDLPGPSSAPDLPG 274
P PG +P +PG + P GP LPG
Sbjct: 1371 QGFPGAPGSMGSPGIPGIPQKIAVQPGTLGPQGRRGLPG 1409
>gi|354483744|ref|XP_003504052.1| PREDICTED: collagen alpha-1(X) chain [Cricetulus griseus]
Length = 680
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 80/206 (38%), Gaps = 28/206 (13%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +P +PG P PG + P PG P LPG L G LPG A
Sbjct: 272 PGQPGIPGEKGHPGAPGIAGPPGAPG-FGKPGLPG------LRGQRGPAGLPGAPGAKGE 324
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
GP+ P G + +P GP +PG P G + GP A GP
Sbjct: 325 QGPAGHPGEAGLTGSPGNMGPQGPKGIPGNHGVPGAKGEAGPIGPVGPPGARGARGP--- 381
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
P L G + P PG L GP P LPGP P + G AP L GP GP
Sbjct: 382 PGLDGKTGYPGEPG------LNGPKGNPGLPGPKGDPGVGG---APGLQGPV------GP 426
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPG 229
+ A +PG + GP P PG
Sbjct: 427 TGAKGMPGHNGE---AGPRGEPGKPG 449
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 78/203 (38%), Gaps = 28/203 (13%)
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
P +PG P PG + P PG P LPG L G LPG A GP
Sbjct: 275 PGIPGEKGHPGAPGIAGPPGAPG-FGKPGLPG------LRGQRGPAGLPGAPGAKGEQGP 327
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
+ P G + +P GP +PG P G + GP A GP P L
Sbjct: 328 AGHPGEAGLTGSPGNMGPQGPKGIPGNHGVPGAKGEAGPIGPVGPPGARGARGP---PGL 384
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
G + P PG L GP P LPGP P + G AP L GP GP+ A
Sbjct: 385 DGKTGYPGEPG------LNGPKGNPGLPGPKGDPGVGG---APGLQGPV------GPTGA 429
Query: 252 PDLPGPSSAPDLPGPSSAPDLPG 274
+PG + GP P PG
Sbjct: 430 KGMPGHNGE---AGPRGEPGKPG 449
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 61/162 (37%), Gaps = 12/162 (7%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P P L G LPG A GP+ P G + +P GP +PG P
Sbjct: 300 KPGLPGLRGQRGPAGLPGAPGAKGEQGPAGHPGEAGLTGSPGNMGPQGPKGIPGNHGVPG 359
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
G + GP A GP G P L GP P LPGP P + G
Sbjct: 360 AKGEAGPIGPVGPPGARGARGPPGLDGKTGYPGEPGLNGPKGNPGLPGPKGDPGVGG--- 416
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
AP L GP GP+ A +PG + GP P PG
Sbjct: 417 APGLQGPV------GPTGAKGMPGHNGE---AGPRGEPGKPG 449
>gi|10179324|dbj|BAB13674.1| type IV collagen alpha 6 chain [Mus musculus]
Length = 1691
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 106/316 (33%), Gaps = 45/316 (14%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP L GP P PG LPG PG +S +PGP+ P G P
Sbjct: 1155 RPGPSGLIGPKGFPGAPGLHGLNGLPGTKGTHGTPG-ASITGVPGPAGLPGPKGERGVPG 1213
Query: 83 L----PGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPG----- 130
+ PG + G +P L GP+ P PG PS PG P L G
Sbjct: 1214 IVIGDPGKQGSKGQKGDQGSPGLQGPAGTPGAPGISLPSVIAGQPGDPGRPGLDGERGRP 1273
Query: 131 ----------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
PSS PG S P +PG G P G S L G P
Sbjct: 1274 GPPGPPGPPGPSSDQGDPGDSGFPGIPGLQG---FKGNQGLPGFSGLSGELGLKGMRGEP 1330
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----------PGPSSAPDLPGP 230
L G PG P + G + GP AP PGP P + G
Sbjct: 1331 GLMGTPGKIGQPGDPGFPGMKGKAGPRGFSGPQGAPGHTPIAEAMQVPPGPLGLPGIDGI 1390
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGP---SSAPDL 281
PG + L G P +PG LPGPS P L GP AP
Sbjct: 1391 PGLIGDPGSQGSVGLQGSKGLPGIPGKDGPSGLPGPSGILGDPGLPGLQGPPGFEGAPGN 1450
Query: 282 PGPSSAPDLPGPSSTV 297
GP P +PG V
Sbjct: 1451 QGPIGQPGMPGHGVRV 1466
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 108/316 (34%), Gaps = 51/316 (16%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PG + G + P LPG S + PGPS L GP P PG
Sbjct: 1122 DPGFPGSPGLQGISGMNGDPGLPGSSGHLGSIGRPGPSG---LIGPKGFPGAPGLHGLNG 1178
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----PGPSSAPDLPGPSSAPDLP 138
LPG PG +S +PGP+ P G P + PG + G +P L
Sbjct: 1179 LPGTKGTHGTPG-ASITGVPGPAGLPGPKGERGVPGIVIGDPGKQGSKGQKGDQGSPGLQ 1237
Query: 139 GPSSAPDLPG---PSSAPDLPGPSSAPDLPG---------------PSSAPDLPGPSSAP 180
GP+ P PG PS PG P L G PSS PG S P
Sbjct: 1238 GPAGTPGAPGISLPSVIAGQPGDPGRPGLDGERGRPGPPGPPGPPGPSSDQGDPGDSGFP 1297
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
+PG G P G S L G P L G PG P + G +
Sbjct: 1298 GIPGLQG---FKGNQGLPGFSGLSGELGLKGMRGEPGLMGTPGKIGQPGDPGFPGMKGKA 1354
Query: 241 SAPDLPGPSSAP----------------DLPGPSSAPDL---PGPSSAPDLPGPSSAPDL 281
GP AP LPG P L PG + L G P +
Sbjct: 1355 GPRGFSGPQGAPGHTPIAEAMQVPPGPLGLPGIDGIPGLIGDPGSQGSVGLQGSKGLPGI 1414
Query: 282 PGPSSAPDLPGPSSTV 297
PG LPGPS +
Sbjct: 1415 PGKDGPSGLPGPSGIL 1430
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 89/250 (35%), Gaps = 21/250 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+ G + P PG LPG + + G P +PG S + L G S L G +
Sbjct: 1010 IKGLNGRPGSPGSMGRRGLPGLKGSLGIAG---FPGMPGKSGSQGLTGTSG---LLGATG 1063
Query: 89 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
P L G PGP P G G PG G + P
Sbjct: 1064 IPGLKGDQGQTLGISGSPGPKGQPGELGFKGVKGKDGLVGDRGYPGNKGDGGKVGITGDP 1123
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
PG + G + P LPG S + PGPS L GP P PG LP
Sbjct: 1124 GFPGSPGLQGISGMNGDPGLPGSSGHLGSIGRPGPSG---LIGPKGFPGAPGLHGLNGLP 1180
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----PGPSSAPDLPGPSSAPDLPGP 257
G PG +S +PGP+ P G P + PG + G +P L GP
Sbjct: 1181 GTKGTHGTPG-ASITGVPGPAGLPGPKGERGVPGIVIGDPGKQGSKGQKGDQGSPGLQGP 1239
Query: 258 SSAPDLPGPS 267
+ P PG S
Sbjct: 1240 AGTPGAPGIS 1249
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 98/279 (35%), Gaps = 30/279 (10%)
Query: 18 STVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG- 76
+++T P LPGP +PG PG + G +P L GP+ P PG
Sbjct: 1191 ASITGVPGPAGLPGPKGERGVPGIVIGD--PGKQGSKGQKGDQGSPGLQGPAGTPGAPGI 1248
Query: 77 --PSSAPDLPGPSSAPDLPG---------------PSSAPDLPGPSSAPDLPGPSSAPDL 119
PS PG P L G PSS PG S P +PG
Sbjct: 1249 SLPSVIAGQPGDPGRPGLDGERGRPGPPGPPGPPGPSSDQGDPGDSGFPGIPGLQG---F 1305
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
G P G S L G P L G PG P + G + GP A
Sbjct: 1306 KGNQGLPGFSGLSGELGLKGMRGEPGLMGTPGKIGQPGDPGFPGMKGKAGPRGFSGPQGA 1365
Query: 180 PDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
P + A + PGP P + G PG + L G P +PG LPG
Sbjct: 1366 PGHTPIAEAMQVPPGPLGLPGIDGIPGLIGDPGSQGSVGLQGSKGLPGIPGKDGPSGLPG 1425
Query: 239 PSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
PS P LPG P G AP GP P +PG
Sbjct: 1426 PSGILGDPGLPGLQGPPGFEG---APGNQGPIGQPGMPG 1461
>gi|242011585|ref|XP_002426529.1| collagen alpha-1 precursor, putative [Pediculus humanus corporis]
gi|212510655|gb|EEB13791.1| collagen alpha-1 precursor, putative [Pediculus humanus corporis]
Length = 1732
Score = 46.2 bits (108), Expect = 0.034, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 58/177 (32%), Gaps = 13/177 (7%)
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
+PG G P GP+ P PG + P G + G P L
Sbjct: 1277 VPGQKGEKGERGYDGQPGTEGPTGPAGSPGFPGEAGPPGPIGLTGPQGPRGEPGPPGLSF 1336
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
PG AP G P + S P LPGP + L G LPG P
Sbjct: 1337 TGLGDGQPGIPGAPGEKGEKGEPGI----SLPGLPGPPGSEGLQGFEGEKGLPGQKGEPG 1392
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
GP GP+ P PG + PGP PG + GP+ PG
Sbjct: 1393 ERGPE------GPAGLPGRPGNNGLYGAPGPKGDRGEPGLPGSDGKRGPTGLTGPPG 1443
Score = 41.6 bits (96), Expect = 0.78, Method: Composition-based stats.
Identities = 49/162 (30%), Positives = 56/162 (34%), Gaps = 7/162 (4%)
Query: 5 FDKHVFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 64
+D TE P+ P E PGP GP P PG S G P
Sbjct: 1289 YDGQPGTEGPTGPAGSPGFPGEAGPPGPIGLTGPQGPRGEPGPPGLSFTGLGDGQPGIPG 1348
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
PG PG S P LPGP + L G LPG P GP GP+
Sbjct: 1349 APGEKGEKGEPG-ISLPGLPGPPGSEGLQGFEGEKGLPGQKGEPGERGPE------GPAG 1401
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
P PG + PGP PG + GP+ PG
Sbjct: 1402 LPGRPGNNGLYGAPGPKGDRGEPGLPGSDGKRGPTGLTGPPG 1443
>gi|667031|emb|CAA46237.1| alpha1 (X) collagen [Mus musculus]
Length = 629
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 78/206 (37%), Gaps = 28/206 (13%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +P +PG P AP + GP AP G P G LPG A
Sbjct: 221 PGQPGIPGEKGHP------GAPGIAGPPGAPGF-GKQGLPGFRGQRGPAGLPGAPGAKGE 273
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
GP+ P PG +P GP +PG +PG L GP+ P G
Sbjct: 274 RGPAGHPGEPGLPGSPGNMGPQGPKGIPGNHG---IPGAKGEIGLVGPAGPPGARGARGP 330
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
P L G + P PG L GP P LPG P + G +P L GP GP
Sbjct: 331 PGLDGKTGYPGEPG------LNGPKGNPGLPGQKGDPGVGG---SPGLRGPV------GP 375
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPG 229
A +PG + GP P +PG
Sbjct: 376 VGAKGVPGHNGE---AGPRGEPGIPG 398
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 76/203 (37%), Gaps = 28/203 (13%)
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
P +PG P AP + GP AP G P G LPG A GP
Sbjct: 224 PGIPGEKGHP------GAPGIAGPPGAPGF-GKQGLPGFRGQRGPAGLPGAPGAKGERGP 276
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
+ P PG +P GP +PG +PG L GP+ P G P L
Sbjct: 277 AGHPGEPGLPGSPGNMGPQGPKGIPGNHG---IPGAKGEIGLVGPAGPPGARGARGPPGL 333
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
G + P PG L GP P LPG P + G +P L GP GP A
Sbjct: 334 DGKTGYPGEPG------LNGPKGNPGLPGQKGDPGVGG---SPGLRGPV------GPVGA 378
Query: 252 PDLPGPSSAPDLPGPSSAPDLPG 274
+PG + GP P +PG
Sbjct: 379 KGVPGHNGE---AGPRGEPGIPG 398
>gi|30076|emb|CAA29076.1| unnamed protein product [Homo sapiens]
Length = 1043
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 84/260 (32%), Gaps = 23/260 (8%)
Query: 57 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 116
PGP +PG LPG P G P +PG P LPGPS P L GP
Sbjct: 781 PGPRGDAGVPGQPGLKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP--- 837
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
P L G AP GP P +PG P G PGP L G G
Sbjct: 838 PGLHGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGE 897
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
P PG +PG P L G +P + G P L G P G + +
Sbjct: 898 QGHPGSPGFKGIDGMPG---TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGI 954
Query: 237 PGPSSAPDLPG-----------------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 279
PG PG D+ G G G P
Sbjct: 955 PGLKGLAGEPGFKGSRGDPGPPGPPPVILPGMKDIKGEKGDEGPMGLKGYLGAKGIQGMP 1014
Query: 280 DLPGPSSAPDLPGPSSTVLG 299
+PG S P LPG + G
Sbjct: 1015 GIPGLSGIPGLPGRPGHIKG 1034
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 60/165 (36%), Gaps = 6/165 (3%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPG P G P +PG P LPGPS P L GP P L G AP GP
Sbjct: 798 LPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLG 854
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P +PG P G PGP L G G P PG +PG
Sbjct: 855 LPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGEQGHPGSPGFKGIDGMPG 914
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
P L G +P + G P L G P G + +PG
Sbjct: 915 ---TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGIPG 956
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 63/179 (35%), Gaps = 9/179 (5%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--- 86
PGP +PG LPG P G P +PG P LPGPS P L GP
Sbjct: 781 PGPRGDAGVPGQPGLKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGPPGL 840
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSA 143
P PG LPG LPG P PGP L G G
Sbjct: 841 HGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGEQGH 900
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
P PG +PG P L G +P + G P L G P G + +PG
Sbjct: 901 PGSPGFKGIDGMPG---TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGIPG 956
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 75/223 (33%), Gaps = 22/223 (9%)
Query: 76 GPSSAPDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
G A LPGP LPG PGP +PG LP
Sbjct: 741 GSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLGAQ-PGPRGDAGVPGQPGLKGLP 799
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
G P G P +PG P LPGPS P L GP P L G AP GP P
Sbjct: 800 GDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLP 856
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
+PG P G PGP L G G P PG +PG
Sbjct: 857 GIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGEQGHPGSPGFKGIDGMPG-- 914
Query: 241 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
P L G +P + G P L G P G + +PG
Sbjct: 915 -TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGIPG 956
>gi|328712197|ref|XP_001944912.2| PREDICTED: collagen alpha-2(IV) chain-like [Acyrthosiphon pisum]
Length = 1650
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 118/305 (38%), Gaps = 59/305 (19%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P PG P PS P PG S P PG AP +PG +P PSS P PG
Sbjct: 390 PGKPGSLGYPSYQQPSPYPSAPGSSGLPGTPGTPGAPGIPGAPGSPSYNIPSSYPSGPG- 448
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPS-----SAPDLPGPSSAPDLPGPSSAPDLPGPS 141
P LPG +P PG AP LPG S S P PG +P PG +P LPG
Sbjct: 449 --TPGLPGSPGSPGQPG---APGLPGSSPYPKPSYPVAPGTPVSPGSPG---SPGLPGQP 500
Query: 142 SAPDLPGPSSAPD-----------------------LPGPSSAPDLPGPSSAPDLPGPSS 178
AP LPG S P PG S P P SA PG
Sbjct: 501 GAPGLPGSSPYPKPSYPAAPGTPGSPGSPGSPGLPGKPG-SYVPQSSYPESA--YPGTPG 557
Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSS-----------APDLPGPSSAPDLPGPSSAPDL 227
P PG P PG S P +P P PG P LPG +P L
Sbjct: 558 QPGQPGTPGLPGKPGASVIPSIPSYEKPQPTYQKPNVGYPGSPGQPGTPGLPG---SPGL 614
Query: 228 PGPSSAPDLPGPSSA-PDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
PG S P P P+SA P PG S +P LPG P LPG P PSS
Sbjct: 615 PGTISYPK-PTPTSAYPVGPGQSGYPGSPGLPGQPGTPGLPGSVYQPSYQKPSSVNQYGN 673
Query: 284 PSSAP 288
PS P
Sbjct: 674 PSLYP 678
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 124/314 (39%), Gaps = 65/314 (20%)
Query: 45 PDLPG-PSS--APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 101
P LPG P S P PS P PG S P PG AP +PG +P PSS P
Sbjct: 387 PGLPGKPGSLGYPSYQQPSPYPSAPGSSGLPGTPGTPGAPGIPGAPGSPSYNIPSSYPSG 446
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-----SAPDLPGPSSAPDLPGPSSAPDLP 156
PG P LPG +P PG AP LPG S S P PG +P PG +P LP
Sbjct: 447 PG---TPGLPGSPGSPGQPG---APGLPGSSPYPKPSYPVAPGTPVSPGSPG---SPGLP 497
Query: 157 GPSSAPDLPGPSSAPD-----------------------LPG----PSSAPD--LPGPSS 187
G AP LPG S P PG SS P+ PG
Sbjct: 498 GQPGAPGLPGSSPYPKPSYPAAPGTPGSPGSPGSPGLPGKPGSYVPQSSYPESAYPGTPG 557
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSS-----------APDLPGPSSAPDLPGPSSAPDL 236
P PG P PG S P +P P PG P LPG +P L
Sbjct: 558 QPGQPGTPGLPGKPGASVIPSIPSYEKPQPTYQKPNVGYPGSPGQPGTPGLPG---SPGL 614
Query: 237 PGPSSAPDLPGPSSA-PDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
PG S P P P+SA P PG S +P LPG P LPG P PSS
Sbjct: 615 PGTISYPK-PTPTSAYPVGPGQSGYPGSPGLPGQPGTPGLPGSVYQPSYQKPSSVNQYGN 673
Query: 293 PSSTVLGSYLGEAG 306
PS + SY G G
Sbjct: 674 PSLYPVSSYPGSQG 687
>gi|432110195|gb|ELK33969.1| Collagen alpha-6(IV) chain [Myotis davidii]
Length = 1255
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 78/217 (35%), Gaps = 21/217 (9%)
Query: 26 EPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
E PG LPG P LPGP LPG S G +P PG P
Sbjct: 403 EIGAPGEQGLQGLPGDRGFPGDSGLPGPKG---LPGKSGLLGPKGEQGSPGTPGHVGQPG 459
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPG 139
+PG P + G P LPG AP PG S P GP P G P L G
Sbjct: 460 IPGTVGLPSVKG---KPGLPG---APGFPGTSGHPGKKGPKGETGPPASTGKRGLPGLKG 513
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
+P L G LPG + P LPGP G P +PG LPG A
Sbjct: 514 LPGSPGLIGFLGNSGLPGDTGLPGLPGPKGEKGSVGLIGFPGMPG------LPGIFGANG 567
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
L G GPS PG PGP P L
Sbjct: 568 LKGIPGLAGKMGPSGRAGSPGEKGDRGDPGPVGIPSL 604
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 109/323 (33%), Gaps = 69/323 (21%)
Query: 18 STVTERPLEPDLPGP---SSAPDLPGP--------------SSAPDLPGPSSAPDLPGPS 60
ST + +P E PGP S +PG + PG P LPG
Sbjct: 257 STRSGKPGEQGDPGPQGLSGETGIPGKDGLPGLLGLPGFPGDAGQGFPGEKGFPGLPGEK 316
Query: 61 S-----------------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 103
L G LPG + LPGP P GP LPG
Sbjct: 317 GHSGSPGPPGIGLPGSPGPRGLSGDKGIDGLPGKTG---LPGP---PGFTGPRGDKGLPG 370
Query: 104 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--------DLPGPSSAPDLPGPSSAP-- 153
P LPG LPG P LPG P PG LPG P
Sbjct: 371 ---FPGLPGKDG---LPGKVGNPGLPGSKGVPGDIFGAEIGAPGEQGLQGLPGDRGFPGD 424
Query: 154 -DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
LPGP LPG S G +P PG P +PG P + G P LPG
Sbjct: 425 SGLPGPKG---LPGKSGLLGPKGEQGSPGTPGHVGQPGIPGTVGLPSVKG---KPGLPG- 477
Query: 213 SSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
AP PG S P GP P G P L G +P L G LPG +
Sbjct: 478 --APGFPGTSGHPGKKGPKGETGPPASTGKRGLPGLKGLPGSPGLIGFLGNSGLPGDTGL 535
Query: 270 PDLPGPSSAPDLPGPSSAPDLPG 292
P LPGP G P +PG
Sbjct: 536 PGLPGPKGEKGSVGLIGFPGMPG 558
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 73/198 (36%), Gaps = 18/198 (9%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P + LPGP LPG S G +P PG P +PG P + G P L
Sbjct: 422 PGDSGLPGPKG---LPGKSGLLGPKGEQGSPGTPGHVGQPGIPGTVGLPSVKG---KPGL 475
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
PG AP PG S P GP P G P L G +P L G LPG
Sbjct: 476 PG---APGFPGTSGHPGKKGPKGETGPPASTGKRGLPGLKGLPGSPGLIGFLGNSGLPGD 532
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ P LPGP G P +PG LPG A L G GPS
Sbjct: 533 TGLPGLPGPKGEKGSVGLIGFPGMPG------LPGIFGANGLKGIPGLAGKMGPSGRAGS 586
Query: 201 PGPSSAPDLPGPSSAPDL 218
PG PGP P L
Sbjct: 587 PGEKGDRGDPGPVGIPSL 604
>gi|308501333|ref|XP_003112851.1| CRE-EMB-9 protein [Caenorhabditis remanei]
gi|308265152|gb|EFP09105.1| CRE-EMB-9 protein [Caenorhabditis remanei]
Length = 1804
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 84/237 (35%), Gaps = 16/237 (6%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EP PG P LPG +PG PG + G LPG AP L G
Sbjct: 1327 EPGTPGQYGMPGLPG------VPGEPGQTGYPGERGLTGIDGKRGHDGLPGQPGAPGLDG 1380
Query: 86 -PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
P + D G AP PG + P G P G S PG P L G
Sbjct: 1381 VPGTEGDCGDDGYPGAPGQPGSNGYPGERGLPGVPGQQGRSGENGFPGQPGIPGLKGSRG 1440
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPD 199
PG +PG +PGP A + P+ AP PG P LPG +
Sbjct: 1441 DDGFPGRDGLDGVPGRPGFAGMPGP-MAMLVRNPTGAPGDNGYPGEKGYPGLPGDNG--- 1496
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
LPGP PG S PGP PGPS G LPG P PG
Sbjct: 1497 LPGPPGKAGYPGASGQDGYPGPPGLNGQPGPSGDSGFQGERGRAGLPGLPGTPGFPG 1553
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 83/236 (35%), Gaps = 16/236 (6%)
Query: 54 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG- 112
P PG P LPG +PG PG + G LPG AP L G
Sbjct: 1328 PGTPGQYGMPGLPG------VPGEPGQTGYPGERGLTGIDGKRGHDGLPGQPGAPGLDGV 1381
Query: 113 PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
P + D G AP PG + P G P G S PG P L G
Sbjct: 1382 PGTEGDCGDDGYPGAPGQPGSNGYPGERGLPGVPGQQGRSGENGFPGQPGIPGLKGSRGD 1441
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDL 227
PG +PG +PGP A + P+ AP PG P LPG + L
Sbjct: 1442 DGFPGRDGLDGVPGRPGFAGMPGPM-AMLVRNPTGAPGDNGYPGEKGYPGLPGDNG---L 1497
Query: 228 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
PGP PG S PGP PGPS G LPG P PG
Sbjct: 1498 PGPPGKAGYPGASGQDGYPGPPGLNGQPGPSGDSGFQGERGRAGLPGLPGTPGFPG 1553
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 83/236 (35%), Gaps = 16/236 (6%)
Query: 63 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG- 121
P PG P LPG +PG PG + G LPG AP L G
Sbjct: 1328 PGTPGQYGMPGLPG------VPGEPGQTGYPGERGLTGIDGKRGHDGLPGQPGAPGLDGV 1381
Query: 122 PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
P + D G AP PG + P G P G S PG P L G
Sbjct: 1382 PGTEGDCGDDGYPGAPGQPGSNGYPGERGLPGVPGQQGRSGENGFPGQPGIPGLKGSRGD 1441
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDL 236
PG +PG +PGP A + P+ AP PG P LPG + L
Sbjct: 1442 DGFPGRDGLDGVPGRPGFAGMPGPM-AMLVRNPTGAPGDNGYPGEKGYPGLPGDNG---L 1497
Query: 237 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
PGP PG S PGP PGPS G LPG P PG
Sbjct: 1498 PGPPGKAGYPGASGQDGYPGPPGLNGQPGPSGDSGFQGERGRAGLPGLPGTPGFPG 1553
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 54/146 (36%), Gaps = 9/146 (6%)
Query: 33 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 92
+ P L G S P LPG +PG AP L G PG P PG
Sbjct: 1134 TGMPGLKGESGQPGLPGRQGNDGIPG---APGLEGECGDEGFPGAPGQPGYPGQQG---R 1187
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGP 149
G P +PG + P L G P L G + P PG PG P PG
Sbjct: 1188 EGEKGYPGMPGENGLPGLRGQDGLPGLKGENGLDGQPGYPGSPGQLGSPGDVGYPGSPGE 1247
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPG 175
+ LPG P L G + P +PG
Sbjct: 1248 NGDNGLPGRDGQPGLRGENGQPGMPG 1273
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 54/146 (36%), Gaps = 9/146 (6%)
Query: 42 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 101
+ P L G S P LPG +PG AP L G PG P PG
Sbjct: 1134 TGMPGLKGESGQPGLPGRQGNDGIPG---APGLEGECGDEGFPGAPGQPGYPGQQG---R 1187
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGP 158
G P +PG + P L G P L G + P PG PG P PG
Sbjct: 1188 EGEKGYPGMPGENGLPGLRGQDGLPGLKGENGLDGQPGYPGSPGQLGSPGDVGYPGSPGE 1247
Query: 159 SSAPDLPGPSSAPDLPGPSSAPDLPG 184
+ LPG P L G + P +PG
Sbjct: 1248 NGDNGLPGRDGQPGLRGENGQPGMPG 1273
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 54/146 (36%), Gaps = 9/146 (6%)
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
+ P L G S P LPG +PG AP L G PG P PG
Sbjct: 1134 TGMPGLKGESGQPGLPGRQGNDGIPG---APGLEGECGDEGFPGAPGQPGYPGQQG---R 1187
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGP 239
G P +PG + P L G P L G + P PG PG P PG
Sbjct: 1188 EGEKGYPGMPGENGLPGLRGQDGLPGLKGENGLDGQPGYPGSPGQLGSPGDVGYPGSPGE 1247
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPG 265
+ LPG P L G + P +PG
Sbjct: 1248 NGDNGLPGRDGQPGLRGENGQPGMPG 1273
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 103/337 (30%), Gaps = 68/337 (20%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------ 80
P L G S P LPG +PG AP L G PG P PG
Sbjct: 1137 PGLKGESGQPGLPGRQGNDGIPG---APGLEGECGDEGFPGAPGQPGYPGQQGREGEKGY 1193
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 137
P +PG + P L G P L G + P PG PG P PG + L
Sbjct: 1194 PGMPGENGLPGLRGQDGLPGLKGENGLDGQPGYPGSPGQLGSPGDVGYPGSPGENGDNGL 1253
Query: 138 PGPSSAPDLPGPSSAPDLPG---------------------------------------- 157
PG P L G + P +PG
Sbjct: 1254 PGRDGQPGLRGENGQPGMPGLQGRDGQPGPIGPPGDDGYPGAPGQDTYGPPGQSGQDGYP 1313
Query: 158 ----------PSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPS 204
+ P PG P LPG P PG + G LPG
Sbjct: 1314 GLDGLPGGPGLNGEPGTPGQYGMPGLPGVPGEPGQTGYPGERGLTGIDGKRGHDGLPGQP 1373
Query: 205 SAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
AP L G P + D G AP PG + P G P G S PG P
Sbjct: 1374 GAPGLDGVPGTEGDCGDDGYPGAPGQPGSNGYPGERGLPGVPGQQGRSGENGFPGQPGIP 1433
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVL 298
L G PG +PG +PGP + ++
Sbjct: 1434 GLKGSRGDDGFPGRDGLDGVPGRPGFAGMPGPMAMLV 1470
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 67/191 (35%), Gaps = 10/191 (5%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +P PG P G PG AP PG + P G P G S
Sbjct: 1370 PGQPGAPGLDGVPGTEGDCGDDGYPG---APGQPGSNGYPGERGLPGVPGQQGRSGENGF 1426
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGP 140
PG P L G PG +PG +PGP A + P+ AP PG
Sbjct: 1427 PGQPGIPGLKGSRGDDGFPGRDGLDGVPGRPGFAGMPGPM-AMLVRNPTGAPGDNGYPGE 1485
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
P LPG + LPGP PG S PGP PGPS G L
Sbjct: 1486 KGYPGLPGDNG---LPGPPGKAGYPGASGQDGYPGPPGLNGQPGPSGDSGFQGERGRAGL 1542
Query: 201 PGPSSAPDLPG 211
PG P PG
Sbjct: 1543 PGLPGTPGFPG 1553
>gi|58891004|gb|AAW83043.1| collagen type X alpha 1, partial [Canis lupus familiaris]
Length = 623
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 83/215 (38%), Gaps = 28/215 (13%)
Query: 60 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 119
+ P PG P +PG P PG + +P PG P LPG L G L
Sbjct: 212 TGKPGAPGAPGQPGIPGTKGHPGAPGIAGSPGAPG-FGKPGLPG------LKGQRGPIGL 264
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
PG A GP+ P PG + P GP +PG +PGP GP+
Sbjct: 265 PGSPGAKGEQGPAGHPGEPGLTGPPGNMGPQGPKGIPGNQG---IPGPKGEMGPVGPAGH 321
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
P G + L G P PG S GP LPGP L G +P LPGP
Sbjct: 322 PGAKGERGSSGLDGKPGYPGEPGSS------GPKGNSGLPGPKGDAGLRG---SPGLPGP 372
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
GP+ A PG + GP AP +PG
Sbjct: 373 V------GPAGAKGTPGHNGE---TGPRGAPGIPG 398
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 79/209 (37%), Gaps = 22/209 (10%)
Query: 21 TERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
T +P P PG P G AP + G AP G P L G LPG A
Sbjct: 212 TGKPGAPGAPGQPGIPGTKGHPGAPGIAGSPGAPGF-GKPGLPGLKGQRGPIGLPGSPGA 270
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
GP+ P PG + P GP +PG +PGP GP+ P G
Sbjct: 271 KGEQGPAGHPGEPGLTGPPGNMGPQGPKGIPGNQG---IPGPKGEMGPVGPAGHPGAKGE 327
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ L G P PG S GP LPGP L G +P LPGP
Sbjct: 328 RGSSGLDGKPGYPGEPGSS------GPKGNSGLPGPKGDAGLRG---SPGLPGPV----- 373
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
GP+ A PG + GP AP +PG
Sbjct: 374 -GPAGAKGTPGHNGE---TGPRGAPGIPG 398
>gi|321465372|gb|EFX76374.1| hypothetical protein DAPPUDRAFT_322423 [Daphnia pulex]
Length = 412
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 68/185 (36%), Gaps = 32/185 (17%)
Query: 1 MIAPFDKHVFTEADYLPSTVTERPLE--PDLPGPSSAPDLPGPSSAPDL----------- 47
+A D + E ER LE P L GP+ A GP+ AP +
Sbjct: 25 QVAYGDNYELEEIQ----RQWERFLEYLPWLRGPAGAQGPQGPAGAPGVVDYSDKYIAGP 80
Query: 48 ------------PGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDL 92
G PG + AP PG AP G + A G + AP
Sbjct: 81 PGAPGPQGYAGPKGEKGNTGAPGYTGAPGPQGKPGDDGAPGAQGLTGARGNDGATGAPGA 140
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
PG S A PG + P L G A G + AP PGP PG + ++PGP A
Sbjct: 141 PGYSGAKGEPGANGGPGLNGAPGARGKDGYNGAPGAPGPKGETGAPGVTVQSNVPGPVGA 200
Query: 153 PDLPG 157
P PG
Sbjct: 201 PGYPG 205
>gi|194222400|ref|XP_001917655.1| PREDICTED: collagen alpha-1(III) chain [Equus caballus]
Length = 1466
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 109/315 (34%), Gaps = 63/315 (20%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------PGPSSAPDLPGPSSAPDLPG 76
RP E LPGP P + GP+ P PG G + AP L G + LPG
Sbjct: 238 RPGERGLPGP---PGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENG---LPG 291
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--------------------- 115
+ AP GP AP G P LPG + + G
Sbjct: 292 ENGAPGPMGPRGAP---GERGRPGLPGAAGSRGNDGARGSDGQPGPPGPPGTAGFPGSPG 348
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP------------------GPSSAPDLPG 157
A GP+ +P G PGP P GP+ P PG
Sbjct: 349 AKGEVGPAGSPGSSGAPGQRGEPGPQGNAGAPGPPGPPGASGSPGGKGEMGPAGIPGAPG 408
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
A PGPS A PG PG + A PG A G + +P +PG A
Sbjct: 409 LIGARGPPGPSGANGAPGQRGPAGEPGKNGAKGEPG---ARGERGEAGSPGIPG---AKG 462
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
G +P PG + P G AP GP+ LPG A PG +P GP
Sbjct: 463 EDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGLPGEKGA---PGDRGSPGPAGPRG 519
Query: 278 APDLPGPSSAPDLPG 292
A PG P PG
Sbjct: 520 AAGEPGRDGVPGGPG 534
>gi|109659989|gb|ABG36940.1| type II collagen alpha 1A [Myxine glutinosa]
Length = 738
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 62/175 (35%), Gaps = 25/175 (14%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 72
LP ER P LPGPS P GP S LPG AP + GP G +
Sbjct: 242 LPGQRGERGF-PGLPGPSGEPGKQGPHGSSGERGLPGSVGAPGMVGPQGEQGRDGNAGQD 300
Query: 73 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------------P 120
PG AP GP GPS P PG AP GP+ D P
Sbjct: 301 GAPGRDGAP---GPKGERGESGPSGQPGAPGQPGAPGHIGPAGKNDARGETGPQGPSGAP 357
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
GP+ +PGP GP G A + G L G +P + G
Sbjct: 358 GPAGTRGIPGPQ------GPRGEKGEHGEQGARGMKGHRGFTGLQGLPGSPGMHG 406
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 46/126 (36%), Gaps = 12/126 (9%)
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPG 229
L G LPG PG LPGPS P GP S LPG AP + G
Sbjct: 233 LAGQRGTVGLPGQRGERGFPG------LPGPSGEPGKQGPHGSSGERGLPGSVGAPGMVG 286
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
P G + PG A PGP GPS P PG AP GP+ D
Sbjct: 287 PQGEQGRDGNAGQDGAPGRDGA---PGPKGERGESGPSGQPGAPGQPGAPGHIGPAGKND 343
Query: 290 LPGPSS 295
G +
Sbjct: 344 ARGETG 349
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 65/192 (33%), Gaps = 27/192 (14%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPG 130
L G LPG PG LPGPS P GP S LPG AP + G
Sbjct: 233 LAGQRGTVGLPGQRGERGFPG------LPGPSGEPGKQGPHGSSGERGLPGSVGAPGMVG 286
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP------G 184
P G + PG AP GP GPS P PG P P G
Sbjct: 287 PQGEQGRDGNAGQDGAPGRDGAP---GPKGERGESGPSGQPGAPG---QPGAPGHIGPAG 340
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
+ A GP PGP+ +PGP GP G A + G
Sbjct: 341 KNDARGETGPQGPSGAPGPAGTRGIPGPQ------GPRGEKGEHGEQGARGMKGHRGFTG 394
Query: 245 LPGPSSAPDLPG 256
L G +P + G
Sbjct: 395 LQGLPGSPGMHG 406
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 43/118 (36%), Gaps = 12/118 (10%)
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPG 238
L G LPG PG LPGPS P GP S LPG AP + G
Sbjct: 233 LAGQRGTVGLPGQRGERGFPG------LPGPSGEPGKQGPHGSSGERGLPGSVGAPGMVG 286
Query: 239 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
P G + PG A PGP GPS P PG AP GP+
Sbjct: 287 PQGEQGRDGNAGQDGAPGRDGA---PGPKGERGESGPSGQPGAPGQPGAPGHIGPAGK 341
>gi|402867397|ref|XP_003897839.1| PREDICTED: collagen alpha-1(IX) chain isoform 1 [Papio anubis]
Length = 921
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 79/233 (33%), Gaps = 15/233 (6%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG S P LPG G P G G GP A L G +
Sbjct: 417 PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGI 476
Query: 90 PDLPGPSSAPDL---PGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G A L PGP P PG P GP G P LPGP
Sbjct: 477 VGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGERGAQGARGIPGLPGPKGD 536
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
LPG +PG +PG P PGP L G P +PG G
Sbjct: 537 TGLPGVDGRDGIPG------MPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGS 590
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ AP PGP PG P GP LPG S +L GP +P LPG
Sbjct: 591 TGAPGKPGPMGNSGKPGQQGPPGEVGPRGPRGLPG--SRGEL-GPVGSPGLPG 640
>gi|344287255|ref|XP_003415369.1| PREDICTED: collagen alpha-2(IX) chain-like [Loxodonta africana]
Length = 750
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 68/192 (35%), Gaps = 9/192 (4%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSS 79
RP P G + P PG P G P LPG S P PGP G
Sbjct: 387 RPGNPGHQGLAGVPGQPGTKGGPGDKGEPGQPGLPGFSGPPGKEGEPGPQGEIGPQGIMG 446
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
G PGP G +P +PGP P + G +P GP + PG
Sbjct: 447 QKGDQGERGPVGQPGPQGRQGPKGEQGSPGIPGPQGLPGIKGEKGSPGKTGPRGSVGDPG 506
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
+ P G PGP + G P PGPS PGP P LPGP
Sbjct: 507 VAGLPGEKGEKGESGEPGPKGQQGVRG---EPGYPGPSGDAGAPGPQGYPGLPGPRG--- 560
Query: 200 LPGPSSAPDLPG 211
L G P LPG
Sbjct: 561 LAGDRGIPGLPG 572
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 78/230 (33%), Gaps = 12/230 (5%)
Query: 74 LPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
+ GP A P + G P PG + G P G + P PG P G
Sbjct: 354 ITGPKGATGPPGIDGKDGTPGTPGMKGSVGQAGRPGNPGHQGLAGVPGQPGTKGGPGDKG 413
Query: 131 PSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
P LPG S P PGP G G PGP G
Sbjct: 414 EPGQPGLPGFSGPPGKEGEPGPQGEIGPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQG 473
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
+P +PGP P + G +P GP + PG + P G PGP + G
Sbjct: 474 SPGIPGPQGLPGIKGEKGSPGKTGPRGSVGDPGVAGLPGEKGEKGESGEPGPKGQQGVRG 533
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
P PGPS PGP P LPGP L G P LPG
Sbjct: 534 ---EPGYPGPSGDAGAPGPQGYPGLPGPRG---LAGDRGIPGLPGRQGVA 577
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 78/225 (34%), Gaps = 12/225 (5%)
Query: 56 LPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 112
+ GP A P + G P PG + G P G + P PG P G
Sbjct: 354 ITGPKGATGPPGIDGKDGTPGTPGMKGSVGQAGRPGNPGHQGLAGVPGQPGTKGGPGDKG 413
Query: 113 PSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
P LPG S P PGP G G PGP G
Sbjct: 414 EPGQPGLPGFSGPPGKEGEPGPQGEIGPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQG 473
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
+P +PGP P + G +P GP + PG + P G PGP + G
Sbjct: 474 SPGIPGPQGLPGIKGEKGSPGKTGPRGSVGDPGVAGLPGEKGEKGESGEPGPKGQQGVRG 533
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
P PGPS PGP P LPGP L G P LPG
Sbjct: 534 ---EPGYPGPSGDAGAPGPQGYPGLPGPRG---LAGDRGIPGLPG 572
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 74/215 (34%), Gaps = 9/215 (4%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P + G P PG + G P G + P PG P G P LPG
Sbjct: 364 PGIDGKDGTPGTPGMKGSVGQAGRPGNPGHQGLAGVPGQPGTKGGPGDKGEPGQPGLPGF 423
Query: 87 SSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
S P PGP G G PGP G +P +PGP
Sbjct: 424 SGPPGKEGEPGPQGEIGPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQGSPGIPGPQGL 483
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
P + G +P GP + PG + P G PGP + G P PGP
Sbjct: 484 PGIKGEKGSPGKTGPRGSVGDPGVAGLPGEKGEKGESGEPGPKGQQGVRG---EPGYPGP 540
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
S PGP P LPGP L G P LPG
Sbjct: 541 SGDAGAPGPQGYPGLPGPRG---LAGDRGIPGLPG 572
>gi|348530964|ref|XP_003452980.1| PREDICTED: collagen alpha-1(IV) chain-like [Oreochromis niloticus]
Length = 1702
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 92/311 (29%), Gaps = 43/311 (13%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +P LPGP G P PG P LPG P G L GPS
Sbjct: 1123 PGKPGLPGPKGDQGSSGYQGQPGRPGDKGTPGLPGFVGEPGQDGRPGETGLQGPSGPKGD 1182
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---- 139
G S +PG + PG + PGP G +P PG P +PG
Sbjct: 1183 KGDSGRDGIPGSTGERGQPG-MAGIGFPGPPGELGSKGDKGSPGFPGNPGIPGVPGVKGD 1241
Query: 140 ----------------PSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
S L GP PG + P PGP+ P G
Sbjct: 1242 KGFPGPQGPQGQPGEQGPSGFSLEGPKGDRGGTGQPGEAGIPGQPGPAGFPGRDGQKGEK 1301
Query: 181 ---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
L G + G S P LPG P L GP L G + P G +
Sbjct: 1302 GDQGLQGFQGESGIKGDSGLPGLPGAPGLPGLDGPKGEVGLQGVTGFPGQKGEAGDLGYR 1361
Query: 238 GPSSAPDLPGPSSAP----------------DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
G + PG PG P GPS P G
Sbjct: 1362 GEAGDRGFPGEKGNEGPPGPPGPQMFIKGDIGFPGNQGLPGPQGPSGLPGQKGDRGVTGF 1421
Query: 282 PGPSSAPDLPG 292
PGP PG
Sbjct: 1422 PGPKGEEGFPG 1432
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 84/257 (32%), Gaps = 37/257 (14%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPG-PSSAPD-------------------- 55
P T ER + P LPG P +PG P LPG P D
Sbjct: 992 PGTSGERGI-PGLPGD---PGMPGKDGEPGLPGKPGDKGDSGEPGEPGGMGPPGPKGGTG 1047
Query: 56 ---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDL 110
+PGPS + G P PG G + P PG P G + P
Sbjct: 1048 EMGVPGPSGPKGVKGDLGTPGHPGFRGTDGEKGETGLPGEPGIGIPGFPGQKGQTGEPGF 1107
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
GP+ G P PG LPGP G P PG P LPG
Sbjct: 1108 QGPAGDKGQKGQEGMPGKPG------LPGPKGDQGSSGYQGQPGRPGDKGTPGLPGFVGE 1161
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
P G L GPS G S +PG + PG + PGP G
Sbjct: 1162 PGQDGRPGETGLQGPSGPKGDKGDSGRDGIPGSTGERGQPG-MAGIGFPGPPGELGSKGD 1220
Query: 231 SSAPDLPGPSSAPDLPG 247
+P PG P +PG
Sbjct: 1221 KGSPGFPGNPGIPGVPG 1237
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 89/269 (33%), Gaps = 20/269 (7%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EP L G P + GP PG S D+ G P G P LPG
Sbjct: 952 EPGLKGDRGEPGVQGP------PGNMSDVDMEHMKGVKGDKGDIGTPGTSGERGIPGLPG 1005
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P +PG P LPG P G S P PG P G + +PGPS
Sbjct: 1006 D---PGMPGKDGEPGLPG---KPGDKGDSGEPGEPGGMGPPGPKGGTGEMGVPGPSGPKG 1059
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPGP 203
+ G P PG G + P PG P G + P GP+ G
Sbjct: 1060 VKGDLGTPGHPGFRGTDGEKGETGLPGEPGIGIPGFPGQKGQTGEPGFQGPAGDKGQKGQ 1119
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
P PG LPGP G P PG P LPG P G L
Sbjct: 1120 EGMPGKPG------LPGPKGDQGSSGYQGQPGRPGDKGTPGLPGFVGEPGQDGRPGETGL 1173
Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
GPS G S +PG + PG
Sbjct: 1174 QGPSGPKGDKGDSGRDGIPGSTGERGQPG 1202
>gi|440898341|gb|ELR49861.1| Collagen alpha-2(IV) chain, partial [Bos grunniens mutus]
Length = 1685
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 68/177 (38%), Gaps = 10/177 (5%)
Query: 37 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 96
DLPG +P L G +PG G PG + + GP P G
Sbjct: 1071 DLPG---SPGLKGERGTTGIPGQKGFFGERGTEGDIGFPGITGLAGVQGP---PGFKGQK 1124
Query: 97 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 156
P L G PG + AP + G S P PG P L G S LPG P P
Sbjct: 1125 GFPGLTGLQGPQGDPGRAGAPGIKGDSGWPGNPGLPGLPGLRGISGLHGLPGSKGFPGSP 1184
Query: 157 GP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
G P PGP+ PG + LPGP+ AP G AP GP +P L G
Sbjct: 1185 GADVHGDPGFPGPAGDKGDPGEPNT--LPGPTGAPGQKGERGAPGERGPIGSPGLQG 1239
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 61/149 (40%), Gaps = 9/149 (6%)
Query: 22 ERPLEPDL--PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
ER E D+ PG + + GP P G P L G PG + AP + G S
Sbjct: 1096 ERGTEGDIGFPGITGLAGVQGP---PGFKGQKGFPGLTGLQGPQGDPGRAGAPGIKGDSG 1152
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDL 137
P PG P L G S LPG P PG P PGP+ PG + L
Sbjct: 1153 WPGNPGLPGLPGLRGISGLHGLPGSKGFPGSPGADVHGDPGFPGPAGDKGDPGEPNT--L 1210
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
PGP+ AP G AP GP +P L G
Sbjct: 1211 PGPTGAPGQKGERGAPGERGPIGSPGLQG 1239
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 66/181 (36%), Gaps = 16/181 (8%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P P L G +PG G PG + + GP P G P L
Sbjct: 1073 PGSPGLKGERGTTGIPGQKGFFGERGTEGDIGFPGITGLAGVQGP---PGFKGQKGFPGL 1129
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G PG + AP + G S P PG P LPG L G S LPG
Sbjct: 1130 TGLQGPQGDPGRAGAPGIKGDSGWPGNPG---LPGLPG------LRGISGLHGLPGSKGF 1180
Query: 144 PDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
P PG P PGP A D P LPGP+ AP G AP GP +P L
Sbjct: 1181 PGSPGADVHGDPGFPGP--AGDKGDPGEPNTLPGPTGAPGQKGERGAPGERGPIGSPGLQ 1238
Query: 202 G 202
G
Sbjct: 1239 G 1239
>gi|176866126|ref|NP_444415.2| collagen, type IV, alpha 6 precursor [Mus musculus]
Length = 1691
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 105/316 (33%), Gaps = 45/316 (14%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP L GP P PG LPG PG +S +PGP+ P G P
Sbjct: 1155 RPGPSGLIGPKGFPGAPGLHGLNGLPGTKGTHGTPG-ASITGVPGPAGLPGPKGERGVPG 1213
Query: 83 L----PGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGP---- 131
+ PG + G +P L GP+ P PG PS PG P L G
Sbjct: 1214 IVIGDPGKQGSKGQKGDQGSPGLQGPAGTPGAPGISLPSVIAGQPGDPGRPGLDGERGRP 1273
Query: 132 -----------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
SS PG S P +PG G P G S L G P
Sbjct: 1274 GPPGPPGPPGPSSDQGDPGDSGFPGIPGLQG---FKGNQGLPGFSGLSGELGLKGMRGEP 1330
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----------PGPSSAPDLPGP 230
L G PG P + G + GP AP PGP P + G
Sbjct: 1331 GLMGTPGKIGQPGDPGFPGMKGKAGPRGFSGPQGAPGHTPIAEAMQVPPGPLGLPGIDGI 1390
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGP---SSAPDL 281
PG + L G P +PG LPGPS P L GP AP
Sbjct: 1391 PGLIGDPGSQGSVGLQGSKGLPGIPGKDGPSGLPGPSGILGDPGLPGLQGPPGFEGAPGN 1450
Query: 282 PGPSSAPDLPGPSSTV 297
GP P +PG V
Sbjct: 1451 QGPIGQPGMPGHGVRV 1466
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 108/316 (34%), Gaps = 51/316 (16%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PG + G + P LPG S + PGPS L GP P PG
Sbjct: 1122 DPGFPGSPGLQGISGMNGDPGLPGSSGHLGSIGRPGPSG---LIGPKGFPGAPGLHGLNG 1178
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----PGPSSAPDLPGPSSAPDLP 138
LPG PG +S +PGP+ P G P + PG + G +P L
Sbjct: 1179 LPGTKGTHGTPG-ASITGVPGPAGLPGPKGERGVPGIVIGDPGKQGSKGQKGDQGSPGLQ 1237
Query: 139 GPSSAPDLPG---PSSAPDLPGPSSAPDLPG---------------PSSAPDLPGPSSAP 180
GP+ P PG PS PG P L G PSS PG S P
Sbjct: 1238 GPAGTPGAPGISLPSVIAGQPGDPGRPGLDGERGRPGPPGPPGPPGPSSDQGDPGDSGFP 1297
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
+PG G P G S L G P L G PG P + G +
Sbjct: 1298 GIPGLQG---FKGNQGLPGFSGLSGELGLKGMRGEPGLMGTPGKIGQPGDPGFPGMKGKA 1354
Query: 241 SAPDLPGPSSAP----------------DLPGPSSAPDL---PGPSSAPDLPGPSSAPDL 281
GP AP LPG P L PG + L G P +
Sbjct: 1355 GPRGFSGPQGAPGHTPIAEAMQVPPGPLGLPGIDGIPGLIGDPGSQGSVGLQGSKGLPGI 1414
Query: 282 PGPSSAPDLPGPSSTV 297
PG LPGPS +
Sbjct: 1415 PGKDGPSGLPGPSGIL 1430
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 89/250 (35%), Gaps = 21/250 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+ G + P PG LPG + + G P +PG S + L G S L G +
Sbjct: 1010 IKGLNGRPGSPGSMGRRGLPGLKGSLGIAG---FPGMPGKSGSQGLTGTSG---LLGATG 1063
Query: 89 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
P L G PGP P G G PG G + P
Sbjct: 1064 IPGLKGDQGQTLGISGSPGPKGQPGELGFKGVKGKDGLVGDRGYPGNKGDGGKVGITGDP 1123
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
PG + G + P LPG S + PGPS L GP P PG LP
Sbjct: 1124 GFPGSPGLQGISGMNGDPGLPGSSGHLGSIGRPGPSG---LIGPKGFPGAPGLHGLNGLP 1180
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----PGPSSAPDLPGPSSAPDLPGP 257
G PG +S +PGP+ P G P + PG + G +P L GP
Sbjct: 1181 GTKGTHGTPG-ASITGVPGPAGLPGPKGERGVPGIVIGDPGKQGSKGQKGDQGSPGLQGP 1239
Query: 258 SSAPDLPGPS 267
+ P PG S
Sbjct: 1240 AGTPGAPGIS 1249
Score = 38.1 bits (87), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 97/279 (34%), Gaps = 30/279 (10%)
Query: 18 STVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG- 76
+++T P LPGP +PG PG + G +P L GP+ P PG
Sbjct: 1191 ASITGVPGPAGLPGPKGERGVPGIVIGD--PGKQGSKGQKGDQGSPGLQGPAGTPGAPGI 1248
Query: 77 --PSSAPDLPGPSSAPDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDL 119
PS PG P L G SS PG S P +PG
Sbjct: 1249 SLPSVIAGQPGDPGRPGLDGERGRPGPPGPPGPPGPSSDQGDPGDSGFPGIPGLQG---F 1305
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
G P G S L G P L G PG P + G + GP A
Sbjct: 1306 KGNQGLPGFSGLSGELGLKGMRGEPGLMGTPGKIGQPGDPGFPGMKGKAGPRGFSGPQGA 1365
Query: 180 PDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
P + A + PGP P + G PG + L G P +PG LPG
Sbjct: 1366 PGHTPIAEAMQVPPGPLGLPGIDGIPGLIGDPGSQGSVGLQGSKGLPGIPGKDGPSGLPG 1425
Query: 239 PSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
PS P LPG P G AP GP P +PG
Sbjct: 1426 PSGILGDPGLPGLQGPPGFEG---APGNQGPIGQPGMPG 1461
>gi|556299|gb|AAA50293.1| alpha-2 type IV collagen [Mus musculus]
Length = 1707
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 91/282 (32%), Gaps = 24/282 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPG LPG + AP G P +PG P PGPS P GP PG
Sbjct: 784 LPGQPGLKGLPGETGAPGFRGSQGMPGMPGLKGQPGFPGPSGQPGQSGPPGQHAFPG--- 840
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P GP P PG P G P +PGP L G + G P PG
Sbjct: 841 TPGREGPLGQPGSPGLGGLPGDRGEPGDPGVPGPVGMKGLSGDRGDAGMSGERGHPGSPG 900
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
+PG P G +P + G L G P G + +PG P
Sbjct: 901 FKGMAGMPG---IPGQKGDRGSPGMDGFQGMLGLKGRQGFPGTKGEAGFFGVPGLKGLPG 957
Query: 209 LPGPSS-----------------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
PG D+ G G L G P +PG S
Sbjct: 958 EPGVKGNRGDRGPPGPPPLILPGMKDIKGEKGDEGPMGLKGYLGLKGIQGMPGVPGVSGF 1017
Query: 252 PDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P LPG P + G P PG P + GP PG
Sbjct: 1018 PGLPGRPGFIKGVKGDIGVPGTPGLPGFPGVSGPPGITGFPG 1059
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 96/258 (37%), Gaps = 25/258 (9%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
DLPG +P L G +PG G + PG + + G +P L G +
Sbjct: 1093 DLPG---SPGLKGERGITGIPGLKGFFGEKGAAGDIGFPGITG---MAGAQGSPGLKGQT 1146
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
P L G PG P G P +PG P + G S LPG P P
Sbjct: 1147 GFPGLTGLQGPQGEPGRIGIPGDKGDFGWPGVPGLPGFPGIRGISGLHGLPGTKGFPGSP 1206
Query: 148 GPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--- 202
G + D PGP+ D A LPGP P G P GP+ +P L G
Sbjct: 1207 GVDAHGDPGFPGPTG--DRGDRGEANTLPGPVGVPGQKGERGTPGERGPAGSPGLQGFPG 1264
Query: 203 ---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPG 256
PS+ PG AP + G L G P PGP++ P + G S A PG
Sbjct: 1265 ISPPSNISGSPGDVGAPGIFG------LQGYQGPPGPPGPNALPGIKGDEGSSGAAGFPG 1318
Query: 257 PSSAPDLPGPSSAPDLPG 274
PGP P + G
Sbjct: 1319 QKGWVGDPGPQGQPGVLG 1336
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 83/234 (35%), Gaps = 17/234 (7%)
Query: 65 LPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 123
L G P +PG S P LPG P + G P PG P + GP PG +
Sbjct: 1002 LKGIQGMPGVPGVSGFPGLPGRPGFIKGVKGDIGVPGTPGLPGFPGVSGP------PGIT 1055
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
P G PG + GP+ D DLPG +P L G +P
Sbjct: 1056 GFPGFTGSRGEKGTPGVAGVFGETGPTG--DFGDIGDTVDLPG---SPGLKGERGITGIP 1110
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
G G + PG + + G +P L G + P L G PG P
Sbjct: 1111 GLKGFFGEKGAAGDIGFPGITG---MAGAQGSPGLKGQTGFPGLTGLQGPQGEPGRIGIP 1167
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSS 295
G P +PG P + G S LPG P PG + D PGP+
Sbjct: 1168 GDKGDFGWPGVPGLPGFPGIRGISGLHGLPGTKGFPGSPGVDAHGDPGFPGPTG 1221
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 97/279 (34%), Gaps = 35/279 (12%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+ G +P L G + P L G PG P G P +PG P + G S
Sbjct: 1133 MAGAQGSPGLKGQTGFPGLTGLQGPQGEPGRIGIPGDKGDFGWPGVPGLPGFPGIRGISG 1192
Query: 89 APDLPGPSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
LPG P PG + D PGP+ D A LPGP P G P
Sbjct: 1193 LHGLPGTKGFPGSPGVDAHGDPGFPGPTG--DRGDRGEANTLPGPVGVPGQKGERGTPGE 1250
Query: 147 PGPSSAPDLPG------PSSAPDLPGPSSAPDLPG------------PSSAPDLP---GP 185
GP+ +P L G PS+ PG AP + G P++ P + G
Sbjct: 1251 RGPAGSPGLQGFPGISPPSNISGSPGDVGAPGIFGLQGYQGPPGPPGPNALPGIKGDEGS 1310
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS----- 240
S A PG PGP P + G G GPS A GP
Sbjct: 1311 SGAAGFPGQKGWVGDPGPQGQPGVLGLPGEKGPKGEQGFMGNTGPSGAVGDRGPKGPKGD 1370
Query: 241 -SAPDLPGPSSAPDLPG----PSSAPDLPGPSSAPDLPG 274
P PG +P +PG + P GP LPG
Sbjct: 1371 QGFPGAPGSMGSPGIPGIPQKIAVQPGTLGPQGRRGLPG 1409
>gi|469548|gb|AAB60258.1| collagen type IV A5 chain, partial [Canis lupus familiaris]
Length = 754
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 71/195 (36%), Gaps = 35/195 (17%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
DL G PG P + GP LPG P PG S P LPGPS GP
Sbjct: 34 DLLGSKGEKGDPGLPGIPGVSGPKGYQGLPGD---PGQPGLSGQPGLPGPS------GPK 84
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPGPS 132
P LPG P L GP P L G PGP P LPG
Sbjct: 85 GNPGLPG---KPGLTGP---PGLKGSIGDMGFPGPQGVKGSPGPPGVPGQPGSPGLPGQK 138
Query: 133 SAPDLPGPSSA--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
PG S P LPGP LPG P + G LPG P PG P
Sbjct: 139 GEKGDPGVSGIGLPGLPGPKGEAGLPGYPGNPGIKGSMGDTGLPG---LPGTPGAKGQPG 195
Query: 191 LPGPSSAPDLPGPSS 205
LPG P LPGP
Sbjct: 196 LPGFPGTPGLPGPKG 210
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 70/192 (36%), Gaps = 38/192 (19%)
Query: 55 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 114
DL G PG P + GP LPG P PG S P LPGPS GP
Sbjct: 34 DLLGSKGEKGDPGLPGIPGVSGPKGYQGLPGD---PGQPGLSGQPGLPGPS------GPK 84
Query: 115 SAPDLPGPSSAPDLPGP----SSAPDL--PGPSSAP---------------DLPGPSSAP 153
P LPG P L GP S D+ PGP LPG
Sbjct: 85 GNPGLPG---KPGLTGPPGLKGSIGDMGFPGPQGVKGSPGPPGVPGQPGSPGLPGQKGEK 141
Query: 154 DLPGPSSA--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
PG S P LPGP LPG P + G LPG P PG P LPG
Sbjct: 142 GDPGVSGIGLPGLPGPKGEAGLPGYPGNPGIKGSMGDTGLPG---LPGTPGAKGQPGLPG 198
Query: 212 PSSAPDLPGPSS 223
P LPGP
Sbjct: 199 FPGTPGLPGPKG 210
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 58/161 (36%), Gaps = 23/161 (14%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
P P +P PG S P LPGPS PG P L GP P L G PG
Sbjct: 56 PKGYQGLPGDPGQPGLSGQPGLPGPSGPKGNPGLPGKPGLTGP---PGLKGSIGDMGFPG 112
Query: 77 PSSA---------------PDLPGPSSAPDLPGPSSA--PDLPGPSSAPDLPGPSSAPDL 119
P P LPG PG S P LPGP LPG P +
Sbjct: 113 PQGVKGSPGPPGVPGQPGSPGLPGQKGEKGDPGVSGIGLPGLPGPKGEAGLPGYPGNPGI 172
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
G LPG P PG P LPG P LPGP
Sbjct: 173 KGSMGDTGLPG---LPGTPGAKGQPGLPGFPGTPGLPGPKG 210
>gi|194672167|ref|XP_585435.4| PREDICTED: collagen alpha-2(IV) chain, partial [Bos taurus]
gi|297481333|ref|XP_002692057.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-2(IV) chain, partial
[Bos taurus]
gi|296481569|tpg|DAA23684.1| TPA: collagen, type IV, alpha 2 [Bos taurus]
Length = 1683
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 68/177 (38%), Gaps = 10/177 (5%)
Query: 37 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 96
DLPG +P L G +PG G PG + + GP P G
Sbjct: 1069 DLPG---SPGLKGERGTTGIPGQKGFFGERGTEGDIGFPGITGLAGVQGP---PGFKGQK 1122
Query: 97 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 156
P L G PG + AP + G S P PG P L G S LPG P P
Sbjct: 1123 GFPGLTGLQGPQGDPGRAGAPGIKGDSGWPGNPGLPGLPGLRGISGLHGLPGSKGFPGSP 1182
Query: 157 GP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
G P PGP+ PG + LPGP+ AP G AP GP +P L G
Sbjct: 1183 GADVHGDPGFPGPAGDKGDPGEPNT--LPGPTGAPGQKGERGAPGERGPIGSPGLQG 1237
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 61/149 (40%), Gaps = 9/149 (6%)
Query: 22 ERPLEPDL--PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
ER E D+ PG + + GP P G P L G PG + AP + G S
Sbjct: 1094 ERGTEGDIGFPGITGLAGVQGP---PGFKGQKGFPGLTGLQGPQGDPGRAGAPGIKGDSG 1150
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDL 137
P PG P L G S LPG P PG P PGP+ PG + L
Sbjct: 1151 WPGNPGLPGLPGLRGISGLHGLPGSKGFPGSPGADVHGDPGFPGPAGDKGDPGEPNT--L 1208
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
PGP+ AP G AP GP +P L G
Sbjct: 1209 PGPTGAPGQKGERGAPGERGPIGSPGLQG 1237
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 67/181 (37%), Gaps = 16/181 (8%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P P L G +PG G PG + + GP P G P L
Sbjct: 1071 PGSPGLKGERGTTGIPGQKGFFGERGTEGDIGFPGITGLAGVQGP---PGFKGQKGFPGL 1127
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G PG + AP + G S P PG P LPG L G S LPG
Sbjct: 1128 TGLQGPQGDPGRAGAPGIKGDSGWPGNPG---LPGLPG------LRGISGLHGLPGSKGF 1178
Query: 144 PDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
P PG P PGP+ PG + LPGP+ AP G AP GP +P L
Sbjct: 1179 PGSPGADVHGDPGFPGPAGDKGDPGEPNT--LPGPTGAPGQKGERGAPGERGPIGSPGLQ 1236
Query: 202 G 202
G
Sbjct: 1237 G 1237
>gi|355561827|gb|EHH18459.1| hypothetical protein EGK_15062 [Macaca mulatta]
Length = 913
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 79/233 (33%), Gaps = 15/233 (6%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG S P LPG G P G G GP A L G +
Sbjct: 409 PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGI 468
Query: 90 PDLPGPSSAPDL---PGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G A L PGP P PG P GP G P LPGP
Sbjct: 469 VGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGERGAQGARGIPGLPGPKGD 528
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
LPG +PG +PG P PGP L G P +PG G
Sbjct: 529 TGLPGVDGRDGIPG------MPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGS 582
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ AP PGP PG P GP LPG S +L GP +P LPG
Sbjct: 583 TGAPGKPGPMGNSGKPGQQGPPGEVGPRGPRGLPG--SRGEL-GPVGSPGLPG 632
>gi|350595876|ref|XP_003360461.2| PREDICTED: collagen alpha-6(IV) chain-like, partial [Sus scrofa]
Length = 1579
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 103/273 (37%), Gaps = 30/273 (10%)
Query: 35 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 94
A LPG P L G P PG P+LPG PGP LPG P LPG
Sbjct: 568 AHGLPGTPGQPGLRGNKGEPGNPGSVHLPELPG------FPGPRGEKGLPG---FPGLPG 618
Query: 95 PSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPS 150
PG +P LPGP AP D+ G S PG LPG P LPGP
Sbjct: 619 KDG---FPGKVGSPGLPGPKGAPGDIIGAESG--APGEQGLQGLPGDRGFPGDAGLPGPK 673
Query: 151 SAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
G P PG PGP L G P LPG AP PG S P
Sbjct: 674 GLLGKSGLLGPKGERGSPGTPGHTGQPGPPGPGGLFGIKGKPGLPG---APGFPGTSGHP 730
Query: 208 DLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
GP P G P L G +P L G P PG + P LPGP
Sbjct: 731 GKRGPRGEIGPPASAGKRGLPGLKGLPGSPGLIGFLGNPGSPGATGLPGLPGPKGEKGSV 790
Query: 265 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
G P +PG P +PG S +PG + V
Sbjct: 791 GLIGFPGIPG---LPGIPGASGLKGIPGSAGRV 820
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 71/193 (36%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG + LPG +P + + P +PG S + L S AP LPG S
Sbjct: 898 IKGLSGIPGPPGSTGLRGLPGLKGSPGI---TGFPGVPGQSGSQGL---SGAPGLPGASG 951
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P L G PGP P G GP PG G A
Sbjct: 952 LPGLKGDQGQTLGISGSPGPKGQPGESGFKGVKGKDGPVGDVGFPGNKGEDGNAGIPGAV 1011
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
LPG P + G P LPG P GP P L G P LPG LPG
Sbjct: 1012 GLPGSPGLPGVAGMRGNPGLPGSPGHPGASGPLGPPGLVGTKGFPGLPGLHGLNGLPGTK 1071
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1072 GTHGTPGPSITGV 1084
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 69/189 (36%), Gaps = 17/189 (8%)
Query: 39 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-------PGPSSAPD 91
PG + P +PG S + L S AP LPG A LPG PGP P
Sbjct: 923 PGITGFPGVPGQSGSQGL---SGAPGLPG---ASGLPGLKGDQGQTLGISGSPGPKGQPG 976
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
G GP PG G A LPG P + G P LPG
Sbjct: 977 ESGFKGVKGKDGPVGDVGFPGNKGEDGNAGIPGAVGLPGSPGLPGVAGMRGNPGLPGSPG 1036
Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
P GP P L G P LPG LPG PGPS +PGP+ LPG
Sbjct: 1037 HPGASGPLGPPGLVGTKGFPGLPGLHGLNGLPGTKGTHGTPGPSIT-GVPGPAG---LPG 1092
Query: 212 PSSAPDLPG 220
P PG
Sbjct: 1093 PKGEKGSPG 1101
>gi|355748689|gb|EHH53172.1| hypothetical protein EGM_13753 [Macaca fascicularis]
Length = 913
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 79/233 (33%), Gaps = 15/233 (6%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG S P LPG G P G G GP A L G +
Sbjct: 409 PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGI 468
Query: 90 PDLPGPSSAPDL---PGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G A L PGP P PG P GP G P LPGP
Sbjct: 469 VGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGERGAQGARGIPGLPGPKGD 528
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
LPG +PG +PG P PGP L G P +PG G
Sbjct: 529 TGLPGVDGRDGIPG------MPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGS 582
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ AP PGP PG P GP LPG S +L GP +P LPG
Sbjct: 583 TGAPGKPGPMGNSGKPGQQGPPGEVGPRGPRGLPG--SRGEL-GPVGSPGLPG 632
>gi|350399883|ref|XP_003485670.1| PREDICTED: hypothetical protein LOC100743696 [Bombus impatiens]
Length = 2763
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 94/267 (35%), Gaps = 33/267 (12%)
Query: 31 GPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
GP + + GP PG S P GP +PG + G AP PG
Sbjct: 1655 GPKGSQGIQGPRGETGRPGQPGESGPQ--GPQGKDGIPGEKGSTGAAGLVGAPGFPGARG 1712
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P +PG P +PG A +PG S G S A G S P G P G
Sbjct: 1713 QPGIPGN---PGVPG---AKGMPGLSGERGFKGDSGAK---GDSGTPGPRGLPGPPGNEG 1763
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAP 207
+ GP GP+ PG AP LPG PD P GP GP
Sbjct: 1764 KRGKRGMRGPIGTS---GPAGERGAPG---APGLPG----PDGPMGPKGQSGDRGPIGPM 1813
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
L G + P PG PG L G AP PG + G P GP+
Sbjct: 1814 GLRGANGDPGRPGS------PGLQGTRGLMGRPGAPGKPGNPGDRGIQGADGKPGEQGPA 1867
Query: 268 SAPDLPGPSSAPDLPGPSSAPDLPGPS 294
LPGP LPG P PG +
Sbjct: 1868 GLQGLPGPIG---LPGEKGYPGEPGKA 1891
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 96/273 (35%), Gaps = 30/273 (10%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLP 84
P PG P PG +P + G A GP + + GP PG S P
Sbjct: 1627 PGQPGTVGKPGSPGFPGSPGVKGDQGAQ---GPKGSQGIQGPRGETGRPGQPGESGPQ-- 1681
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
GP +PG + G AP PG P +PG P +PG A +PG S
Sbjct: 1682 GPQGKDGIPGEKGSTGAAGLVGAPGFPGARGQPGIPGN---PGVPG---AKGMPGLSGER 1735
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
G S A G S P G P G + GP GP+ PG
Sbjct: 1736 GFKGDSGAK---GDSGTPGPRGLPGPPGNEGKRGKRGMRGPIGTS---GPAGERGAPG-- 1787
Query: 205 SAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSA 260
AP LPG PD P GP GP L G + P PG L G A
Sbjct: 1788 -APGLPG----PDGPMGPKGQSGDRGPIGPMGLRGANGDPGRPGSPGLQGTRGLMGRPGA 1842
Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
P PG + G P GP+ LPGP
Sbjct: 1843 PGKPGNPGDRGIQGADGKPGEQGPAGLQGLPGP 1875
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 87/258 (33%), Gaps = 47/258 (18%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
P T RP +P GP GP +PG + G AP PG P +PG
Sbjct: 1665 PRGETGRPGQPGESGPQ------GPQGKDGIPGEKGSTGAAGLVGAPGFPGARGQPGIPG 1718
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---------------DLPGPSSAPDLPG 121
P +PG A +PG S G S A G + G
Sbjct: 1719 N---PGVPG---AKGMPGLSGERGFKGDSGAKGDSGTPGPRGLPGPPGNEGKRGKRGMRG 1772
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAP 180
P GP+ PG AP LPG PD P GP GP L G + P
Sbjct: 1773 PIGTS---GPAGERGAPG---APGLPG----PDGPMGPKGQSGDRGPIGPMGLRGANGDP 1822
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
PG PG L G AP PG + G P GP+ LPGP
Sbjct: 1823 GRPGS------PGLQGTRGLMGRPGAPGKPGNPGDRGIQGADGKPGEQGPAGLQGLPGPI 1876
Query: 241 SAPDLPGPSSAPDLPGPS 258
LPG P PG +
Sbjct: 1877 G---LPGEKGYPGEPGKA 1891
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 72/203 (35%), Gaps = 16/203 (7%)
Query: 58 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 117
GP P +PG P + G P L G + G + +PGP GP+
Sbjct: 1547 GPRGLPGMPG---LPGVKGHRGFPGLDGAKGEQGVSGEKGSMGVPGPMGHVGPMGPAGPR 1603
Query: 118 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 177
G P PG + GP P PG P PG +P + G A GP
Sbjct: 1604 GERGREGPPGPPGIRGVDGIAGP---PGQPGTVGKPGSPGFPGSPGVKGDQGAQ---GPK 1657
Query: 178 SAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 235
+ + GP PG S P GP +PG + G AP PG P
Sbjct: 1658 GSQGIQGPRGETGRPGQPGESGPQ--GPQGKDGIPGEKGSTGAAGLVGAPGFPGARGQPG 1715
Query: 236 LPGPSSAPDLPGPSSAPDLPGPS 258
+PG P +PG P L G
Sbjct: 1716 IPGN---PGVPGAKGMPGLSGER 1735
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 92/267 (34%), Gaps = 25/267 (9%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPG P + G P L G + G + +PGP GP+ G
Sbjct: 1551 LPGMPGLPGVKGHRGFPGLDGAKGEQGVSGEKGSMGVPGPMGHVGPMGPAGPRGERGREG 1610
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P PG + GP P PG P PG +P + G A GP + + G
Sbjct: 1611 PPGPPGIRGVDGIAGP---PGQPGTVGKPGSPGFPGSPGVKGDQGAQ---GPKGSQGIQG 1664
Query: 149 PSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
P PG S P GP +PG + G AP PG P +PG
Sbjct: 1665 PRGETGRPGQPGESGPQ--GPQGKDGIPGEKGSTGAAGLVGAPGFPGARGQPGIPGN--- 1719
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
P +PG P L G G S A G S P G P G + GP
Sbjct: 1720 PGVPGAKGMPGLSGERG---FKGDSGA---KGDSGTPGPRGLPGPPGNEGKRGKRGMRGP 1773
Query: 267 SSAPDLPGPSSAPDLPGPSSAPDLPGP 293
GP+ PG AP LPGP
Sbjct: 1774 IGT---SGPAGERGAPG---APGLPGP 1794
>gi|148682813|gb|EDL14760.1| procollagen, type IV, alpha 6, isoform CRA_a [Mus musculus]
Length = 1689
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 106/316 (33%), Gaps = 45/316 (14%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP L GP P PG LPG PG +S +PGP+ P G P
Sbjct: 1153 RPGPSGLIGPKGFPGAPGLHGLNGLPGTKGTHGTPG-ASITGVPGPAGLPGPKGERGVPG 1211
Query: 83 L----PGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPG----- 130
+ PG + G +P L GP+ P PG PS PG P L G
Sbjct: 1212 IVIGDPGKQGSKGQKGDQGSPGLQGPAGTPGAPGISLPSVIAGQPGDPGRPGLDGERGRP 1271
Query: 131 ----------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
PSS PG S P +PG G P G S L G P
Sbjct: 1272 GPPGPPGPPGPSSDQGDPGDSGFPGIPGLQG---FKGNQGLPGFSGLSGELGLKGMRGEP 1328
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----------PGPSSAPDLPGP 230
L G PG P + G + GP AP PGP P + G
Sbjct: 1329 GLMGTPGKIGQPGDPGFPGMKGKAGPRGFSGPQGAPGHTPIAEAMQVPPGPLGLPGIDGI 1388
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGP---SSAPDL 281
PG + L G P +PG LPGPS P L GP AP
Sbjct: 1389 PGLIGDPGSQGSVGLQGSKGLPGIPGKDGPSGLPGPSGILGDPGLPGLQGPPGFEGAPGN 1448
Query: 282 PGPSSAPDLPGPSSTV 297
GP P +PG V
Sbjct: 1449 QGPIGQPGMPGHGVRV 1464
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 108/316 (34%), Gaps = 51/316 (16%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PG + G + P LPG S + PGPS L GP P PG
Sbjct: 1120 DPGFPGSPGLQGISGMNGDPGLPGSSGHLGSIGRPGPSG---LIGPKGFPGAPGLHGLNG 1176
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----PGPSSAPDLPGPSSAPDLP 138
LPG PG +S +PGP+ P G P + PG + G +P L
Sbjct: 1177 LPGTKGTHGTPG-ASITGVPGPAGLPGPKGERGVPGIVIGDPGKQGSKGQKGDQGSPGLQ 1235
Query: 139 GPSSAPDLPG---PSSAPDLPGPSSAPDLPG---------------PSSAPDLPGPSSAP 180
GP+ P PG PS PG P L G PSS PG S P
Sbjct: 1236 GPAGTPGAPGISLPSVIAGQPGDPGRPGLDGERGRPGPPGPPGPPGPSSDQGDPGDSGFP 1295
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
+PG G P G S L G P L G PG P + G +
Sbjct: 1296 GIPGLQG---FKGNQGLPGFSGLSGELGLKGMRGEPGLMGTPGKIGQPGDPGFPGMKGKA 1352
Query: 241 SAPDLPGPSSAP----------------DLPGPSSAPDL---PGPSSAPDLPGPSSAPDL 281
GP AP LPG P L PG + L G P +
Sbjct: 1353 GPRGFSGPQGAPGHTPIAEAMQVPPGPLGLPGIDGIPGLIGDPGSQGSVGLQGSKGLPGI 1412
Query: 282 PGPSSAPDLPGPSSTV 297
PG LPGPS +
Sbjct: 1413 PGKDGPSGLPGPSGIL 1428
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 89/250 (35%), Gaps = 21/250 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+ G + P PG LPG + + G P +PG S + L G S L G +
Sbjct: 1008 IKGLNGRPGSPGSMGRRGLPGLKGSLGIAG---FPGMPGKSGSQGLTGTSG---LLGATG 1061
Query: 89 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
P L G PGP P G G PG G + P
Sbjct: 1062 IPGLKGDQGQTLGISGSPGPKGQPGELGFKGVKGKDGLVGDRGYPGNKGDGGKVGITGDP 1121
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
PG + G + P LPG S + PGPS L GP P PG LP
Sbjct: 1122 GFPGSPGLQGISGMNGDPGLPGSSGHLGSIGRPGPSG---LIGPKGFPGAPGLHGLNGLP 1178
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----PGPSSAPDLPGPSSAPDLPGP 257
G PG +S +PGP+ P G P + PG + G +P L GP
Sbjct: 1179 GTKGTHGTPG-ASITGVPGPAGLPGPKGERGVPGIVIGDPGKQGSKGQKGDQGSPGLQGP 1237
Query: 258 SSAPDLPGPS 267
+ P PG S
Sbjct: 1238 AGTPGAPGIS 1247
>gi|109071662|ref|XP_001111640.1| PREDICTED: collagen alpha-1(IX) chain-like isoform 2 [Macaca
mulatta]
Length = 921
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 79/233 (33%), Gaps = 15/233 (6%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG S P LPG G P G G GP A L G +
Sbjct: 417 PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGI 476
Query: 90 PDLPGPSSAPDL---PGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G A L PGP P PG P GP G P LPGP
Sbjct: 477 VGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGERGAQGARGIPGLPGPKGD 536
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
LPG +PG +PG P PGP L G P +PG G
Sbjct: 537 TGLPGVDGRDGIPG------MPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGS 590
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ AP PGP PG P GP LPG S +L GP +P LPG
Sbjct: 591 TGAPGKPGPMGNSGKPGQQGPPGEVGPRGPRGLPG--SRGEL-GPVGSPGLPG 640
>gi|50978940|ref|NP_001003187.1| collagen alpha-2(I) chain precursor [Canis lupus familiaris]
gi|8134352|sp|O46392.2|CO1A2_CANFA RecName: Full=Collagen alpha-2(I) chain; AltName: Full=Alpha-2 type
I collagen; Flags: Precursor
gi|3386334|gb|AAC64485.1| type I procollagen pro-alpha 2 chain [Canis lupus familiaris]
Length = 1366
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 103/276 (37%), Gaps = 18/276 (6%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
GP LPG S PG A L G A LPG + AP LPGP +PGP A
Sbjct: 280 GPRGEVGLPGVSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRG---IPGPVGAA 336
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
G PGP+ + G S PG + A PGPS GP+ GPS
Sbjct: 337 GATGARGIVGEPGPAGSK---GESGNKGEPGSAGAQGPPGPSGEEGKRGPNGEAGSAGPS 393
Query: 151 SAPDL---PGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPS 204
P L PG P GP+ PGP A + GP+ PG P L GP
Sbjct: 394 GPPGLRGSPGSRGLPGADGPAGVMGPPGPRGATGPAGVRGPNGDSGRPG---EPGLMGPR 450
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
P PG GP LPG P GP+ A PG P GP+ P
Sbjct: 451 GFPGAPGNVGPAGKEGPMG---LPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKN 507
Query: 265 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGS 300
G L G AP G + A PGP G
Sbjct: 508 GDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGK 543
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 102/275 (37%), Gaps = 24/275 (8%)
Query: 35 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 94
A L G A LPG + AP LPGP +PGP A G PGP+ + G
Sbjct: 302 ANGLTGAKGAAGLPGVAGAPGLPGPRG---IPGPVGAAGATGARGIVGEPGPAGSK---G 355
Query: 95 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSS 151
S PG + A PGPS GP+ GPS P L PG P GP+
Sbjct: 356 ESGNKGEPGSAGAQGPPGPSGEEGKRGPNGEAGSAGPSGPPGLRGSPGSRGLPGADGPAG 415
Query: 152 APDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
PGP A + GP+ PG P L GP P PG GP
Sbjct: 416 VMGPPGPRGATGPAGVRGPNGDSGRPG---EPGLMGPRGFPGAPGNVGPAGKEGPMG--- 469
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
LPG P GP+ A PG P GP+ P G L G AP G +
Sbjct: 470 LPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNG 529
Query: 269 APDLPGPSSAPDLP------GPSSAPDLPGPSSTV 297
A PGP GP LPGP+ T
Sbjct: 530 AQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPAGTA 564
>gi|148682815|gb|EDL14762.1| procollagen, type IV, alpha 6, isoform CRA_c [Mus musculus]
Length = 1238
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 117/447 (26%), Positives = 151/447 (33%), Gaps = 69/447 (15%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP L GP P PG LPG PG +S +PGP+ P G P
Sbjct: 702 RPGPSGLIGPKGFPGAPGLHGLNGLPGTKGTHGTPG-ASITGVPGPAGLPGPKGERGVPG 760
Query: 83 L----PGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPG----- 130
+ PG + G +P L GP+ P PG PS PG P L G
Sbjct: 761 IVIGDPGKQGSKGQKGDQGSPGLQGPAGTPGAPGISLPSVIAGQPGDPGRPGLDGERGRP 820
Query: 131 ----------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
PSS PG S P +PG G P G S L G P
Sbjct: 821 GPPGPPGPPGPSSDQGDPGDSGFPGIPGLQG---FKGNQGLPGFSGLSGELGLKGMRGEP 877
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----------PGPSSAPDLPGP 230
L G PG P + G + GP AP PGP P + G
Sbjct: 878 GLMGTPGKIGQPGDPGFPGMKGKAGPRGFSGPQGAPGHTPIAEAMQVPPGPLGLPGIDGI 937
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGP---SSAPDL 281
PG + L G P +PG LPGPS P L GP AP
Sbjct: 938 PGLIGDPGSQGSVGLQGSKGLPGIPGKDGPSGLPGPSGILGDPGLPGLQGPPGFEGAPGN 997
Query: 282 PGPSSAPDLPGPSSTVLGSYLGEAGHQK---SPKGLEPKPAQIS--FVLNIFANFHQTLR 336
GP P +PG V + + + ++ P G+ S FV +Q L
Sbjct: 998 QGPIGQPGMPGHGVRVGYTLVKHSQSEQVPLCPTGMSRLWVGYSLLFVEGQEKAHNQDLG 1057
Query: 337 FLHFSCTSLVVTRATVVKLPLYILTVEDDTVILLFIETFIQLPQQAYTTNSFA--PMDPS 394
F SC T +P + + + + + ++Y ++ A PM P
Sbjct: 1058 FAG-SCLPRFST------MPFIYCNINE-------VCHYARRNDKSYWLSTTAPIPMMPV 1103
Query: 395 KDDTVILLFIKTC--IQLPQQAYTTNS 419
T I +I C + P QA +S
Sbjct: 1104 -GQTQIPQYISRCSVCEAPSQAIAVHS 1129
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 108/316 (34%), Gaps = 51/316 (16%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PG + G + P LPG S + PGPS L GP P PG
Sbjct: 669 DPGFPGSPGLQGISGMNGDPGLPGSSGHLGSIGRPGPSG---LIGPKGFPGAPGLHGLNG 725
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----PGPSSAPDLPGPSSAPDLP 138
LPG PG +S +PGP+ P G P + PG + G +P L
Sbjct: 726 LPGTKGTHGTPG-ASITGVPGPAGLPGPKGERGVPGIVIGDPGKQGSKGQKGDQGSPGLQ 784
Query: 139 GPSSAPDLPG---PSSAPDLPGPSSAPDLPG---------------PSSAPDLPGPSSAP 180
GP+ P PG PS PG P L G PSS PG S P
Sbjct: 785 GPAGTPGAPGISLPSVIAGQPGDPGRPGLDGERGRPGPPGPPGPPGPSSDQGDPGDSGFP 844
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
+PG G P G S L G P L G PG P + G +
Sbjct: 845 GIPGLQG---FKGNQGLPGFSGLSGELGLKGMRGEPGLMGTPGKIGQPGDPGFPGMKGKA 901
Query: 241 SAPDLPGPSSAP----------------DLPGPSSAPDL---PGPSSAPDLPGPSSAPDL 281
GP AP LPG P L PG + L G P +
Sbjct: 902 GPRGFSGPQGAPGHTPIAEAMQVPPGPLGLPGIDGIPGLIGDPGSQGSVGLQGSKGLPGI 961
Query: 282 PGPSSAPDLPGPSSTV 297
PG LPGPS +
Sbjct: 962 PGKDGPSGLPGPSGIL 977
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 89/250 (35%), Gaps = 21/250 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+ G + P PG LPG + + G P +PG S + L G S L G +
Sbjct: 557 IKGLNGRPGSPGSMGRRGLPGLKGSLGIAG---FPGMPGKSGSQGLTGTSG---LLGATG 610
Query: 89 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
P L G PGP P G G PG G + P
Sbjct: 611 IPGLKGDQGQTLGISGSPGPKGQPGELGFKGVKGKDGLVGDRGYPGNKGDGGKVGITGDP 670
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
PG + G + P LPG S + PGPS L GP P PG LP
Sbjct: 671 GFPGSPGLQGISGMNGDPGLPGSSGHLGSIGRPGPSG---LIGPKGFPGAPGLHGLNGLP 727
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----PGPSSAPDLPGPSSAPDLPGP 257
G PG +S +PGP+ P G P + PG + G +P L GP
Sbjct: 728 GTKGTHGTPG-ASITGVPGPAGLPGPKGERGVPGIVIGDPGKQGSKGQKGDQGSPGLQGP 786
Query: 258 SSAPDLPGPS 267
+ P PG S
Sbjct: 787 AGTPGAPGIS 796
>gi|354506837|ref|XP_003515466.1| PREDICTED: collagen alpha-1(III) chain-like isoform 1 [Cricetulus
griseus]
gi|354506839|ref|XP_003515467.1| PREDICTED: collagen alpha-1(III) chain-like isoform 2 [Cricetulus
griseus]
Length = 1466
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 107/300 (35%), Gaps = 48/300 (16%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E LPGP P + GPS P PG G + G + AP L G +
Sbjct: 240 RPGERGLPGP---PGIKGPSGMPGFPGMKGHRGFDGRNGE---KGETGAPGLKGENG--- 290
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS------------------- 123
LPG + AP GP A PG P LPG + A G
Sbjct: 291 LPGDNGAPGPMGPRGA---PGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPG 347
Query: 124 --SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
A GP+ +P G PGP GP P G GP+ P
Sbjct: 348 SPGAKGEVGPAGSPGSNGSPGQRGEPGPQGHAGAQGPPGPPGNNGSPGGKGEMGPAGIPG 407
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 240
PG A PGP+ PG PG + A PG A G + +P +PGP
Sbjct: 408 APGLMGARGPPGPAGTNGAPGQRGPSGEPGKNGAKGEPG---ARGERGEAGSPGIPGPKG 464
Query: 241 -----SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
+P PG + P G AP GP+ GP+ P GP+ PGP+
Sbjct: 465 EDGKDGSPGEPGANGLPGTAGERGAPGFRGPA------GPNGIPGEKGPAGERGAPGPAG 518
>gi|406606893|emb|CCH41747.1| putative secreted protein [Wickerhamomyces ciferrii]
Length = 687
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 89/179 (49%), Positives = 93/179 (51%), Gaps = 1/179 (0%)
Query: 21 TERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
T P+ P PSS P PSS P PSS P PSS P PSS PGPSS
Sbjct: 464 TYCPITSGAPAPSSEAPAPKPSSEVPAPKPSSEAPAPKPSSEAPKPAPSSGAPAPGPSSE 523
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
P PSS PGPSS P PSS AP GPSS P PSS P PSS PG
Sbjct: 524 APKPAPSSGAPAPGPSSEAPKPAPSSGAPAPAGPSSEAPAPAPSSGAPAPAPSSEAPAPG 583
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
+SA PG S+AP GPSSA PG S+AP GPSSA PG SSA PG SSAP
Sbjct: 584 TTSAAPAPGSSAAPAPEGPSSAAPAPGSSAAPAPEGPSSAAPAPGSSSAAPAPGSSSAP 642
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 90/170 (52%), Gaps = 1/170 (0%)
Query: 48 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 107
P PSS P PSS P PSS P PSS P PSS PGPSS P PSS
Sbjct: 473 PAPSSEAPAPKPSSEVPAPKPSSEAPAPKPSSEAPKPAPSSGAPAPGPSSEAPKPAPSSG 532
Query: 108 PDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
PGPSS P PSS AP GPSS P PSS P PSS PG +SA PG
Sbjct: 533 APAPGPSSEAPKPAPSSGAPAPAGPSSEAPAPAPSSGAPAPAPSSEAPAPGTTSAAPAPG 592
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
S+AP GPSSA PG S+AP GPSSA PG SSA PG SSAP
Sbjct: 593 SSAAPAPEGPSSAAPAPGSSAAPAPEGPSSAAPAPGSSSAAPAPGSSSAP 642
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 90/170 (52%), Gaps = 1/170 (0%)
Query: 66 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
P PSS P PSS P PSS P PSS P PSS PGPSS P PSS
Sbjct: 473 PAPSSEAPAPKPSSEVPAPKPSSEAPAPKPSSEAPKPAPSSGAPAPGPSSEAPKPAPSSG 532
Query: 126 PDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
PGPSS P PSS AP GPSS P PSS P PSS PG +SA PG
Sbjct: 533 APAPGPSSEAPKPAPSSGAPAPAGPSSEAPAPAPSSGAPAPAPSSEAPAPGTTSAAPAPG 592
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
S+AP GPSSA PG S+AP GPSSA PG SSA PG SSAP
Sbjct: 593 SSAAPAPEGPSSAAPAPGSSAAPAPEGPSSAAPAPGSSSAAPAPGSSSAP 642
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 90/170 (52%), Gaps = 1/170 (0%)
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
P PSS P PSS P PSS P PSS P PSS PGPSS P PSS
Sbjct: 473 PAPSSEAPAPKPSSEVPAPKPSSEAPAPKPSSEAPKPAPSSGAPAPGPSSEAPKPAPSSG 532
Query: 144 PDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
PGPSS P PSS AP GPSS P PSS P PSS PG +SA PG
Sbjct: 533 APAPGPSSEAPKPAPSSGAPAPAGPSSEAPAPAPSSGAPAPAPSSEAPAPGTTSAAPAPG 592
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
S+AP GPSSA PG S+AP GPSSA PG SSA PG SSAP
Sbjct: 593 SSAAPAPEGPSSAAPAPGSSAAPAPEGPSSAAPAPGSSSAAPAPGSSSAP 642
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 90/170 (52%), Gaps = 1/170 (0%)
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
P PSS P PSS P PSS P PSS P PSS PGPSS P PSS
Sbjct: 473 PAPSSEAPAPKPSSEVPAPKPSSEAPAPKPSSEAPKPAPSSGAPAPGPSSEAPKPAPSSG 532
Query: 162 PDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
PGPSS P PSS AP GPSS P PSS P PSS PG +SA PG
Sbjct: 533 APAPGPSSEAPKPAPSSGAPAPAGPSSEAPAPAPSSGAPAPAPSSEAPAPGTTSAAPAPG 592
Query: 221 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
S+AP GPSSA PG S+AP GPSSA PG SSA PG SSAP
Sbjct: 593 SSAAPAPEGPSSAAPAPGSSAAPAPEGPSSAAPAPGSSSAAPAPGSSSAP 642
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 90/170 (52%), Gaps = 1/170 (0%)
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
P PSS P PSS P PSS P PSS P PSS PGPSS P PSS
Sbjct: 473 PAPSSEAPAPKPSSEVPAPKPSSEAPAPKPSSEAPKPAPSSGAPAPGPSSEAPKPAPSSG 532
Query: 171 PDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
PGPSS P PSS AP GPSS P PSS P PSS PG +SA PG
Sbjct: 533 APAPGPSSEAPKPAPSSGAPAPAGPSSEAPAPAPSSGAPAPAPSSEAPAPGTTSAAPAPG 592
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 279
S+AP GPSSA PG S+AP GPSSA PG SSA PG SSAP
Sbjct: 593 SSAAPAPEGPSSAAPAPGSSAAPAPEGPSSAAPAPGSSSAAPAPGSSSAP 642
>gi|56711254|ref|NP_114474.1| collagen alpha-1(III) chain precursor [Rattus norvegicus]
gi|83301602|sp|P13941.3|CO3A1_RAT RecName: Full=Collagen alpha-1(III) chain; Flags: Precursor
gi|56268836|gb|AAH87039.1| Collagen, type III, alpha 1 [Rattus norvegicus]
gi|149046235|gb|EDL99128.1| procollagen, type III, alpha 1 [Rattus norvegicus]
Length = 1463
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 110/290 (37%), Gaps = 39/290 (13%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E LPGP P + GP+ P PG G + G + AP L G +
Sbjct: 237 RPGERGLPGP---PGIKGPAGIPGFPGMKGHRGFDGRNGEK---GETGAPGLKGENG--- 287
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---------- 132
LPG + AP GP AP G P LPG + A G + PGP
Sbjct: 288 LPGDNGAPGPMGPRGAP---GERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPG 344
Query: 133 --SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
A GP+ +P G PGP GP P G GP+ P
Sbjct: 345 SPGAKGEVGPAGSPGSNGSPGQRGEPGPQGHAGAQGPPGPPGNNGSPGGKGEMGPAGIPG 404
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 249
PG A PGP+ A PG PG + A PG A G + +P +PGP
Sbjct: 405 APGLLGARGPPGPAGANGAPGQRGPSGEPGKNGAKGEPG---ARGERGEAGSPGIPGPKG 461
Query: 250 -----SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
+P PG + P PG AP GP+ GP+ AP GP+
Sbjct: 462 EDGKDGSPGEPGANGVPGNPGERGAPGFRGPA------GPNGAPGEKGPA 505
>gi|431838732|gb|ELK00662.1| Collagen alpha-1(X) chain [Pteropus alecto]
Length = 680
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 63/160 (39%), Gaps = 10/160 (6%)
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
PG + AP PG P G AP + GP AP G P L G LPG A
Sbjct: 266 PGAAGAPGQPG---IPGTKGHPGAPGIAGPPGAPGF-GKPGLPGLKGQRGPVGLPGSPGA 321
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
GP+ P PG + P GP +PG +PGP GP+ P G
Sbjct: 322 KGEQGPAGHPGEPGLTGPPGNMGPQGPKGIPGNHG---IPGPKGETGPFGPAGLPGAKGE 378
Query: 195 SSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
A L PG P L GP P LPGP P + GP
Sbjct: 379 RGASGLDGKPGYPGEPGLSGPKGNPGLPGPKGDPGVEGPR 418
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 62/157 (39%), Gaps = 13/157 (8%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +P +PG P PG + P PG P LPG L G LPG A
Sbjct: 272 PGQPGIPGTKGHPGAPGIAGPPGAPG-FGKPGLPG------LKGQRGPVGLPGSPGAKGE 324
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
GP+ P PG + P GP +PG +PGP GP+ P G A
Sbjct: 325 QGPAGHPGEPGLTGPPGNMGPQGPKGIPGNHG---IPGPKGETGPFGPAGLPGAKGERGA 381
Query: 144 PDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 177
L PG P L GP P LPGP P + GP
Sbjct: 382 SGLDGKPGYPGEPGLSGPKGNPGLPGPKGDPGVEGPR 418
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 92/274 (33%), Gaps = 42/274 (15%)
Query: 19 TVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP--- 75
+V+ +P + PG PG AP +PG + G AP PG P
Sbjct: 153 SVSGKPGQQGSPGAPGPRGFPGEKGAPGVPGINGQKGETG-YGAPGRPGERGLPGPQGPM 211
Query: 76 -----------GPSSAPDLPGPSSAPDLPGPS-----------------SAPDLPGPSSA 107
G + P PG PG PG + A
Sbjct: 212 GPPGPPGMGKRGENGFPGQPGIKGDRGFPGERGSIGPPGPQGPPGERGPEGIGKPGAAGA 271
Query: 108 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 167
P PG P G AP + GP AP G P L G LPG A GP
Sbjct: 272 PGQPG---IPGTKGHPGAPGIAGPPGAPGF-GKPGLPGLKGQRGPVGLPGSPGAKGEQGP 327
Query: 168 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 227
+ P PG + P GP +PG +PGP GP+ P G A L
Sbjct: 328 AGHPGEPGLTGPPGNMGPQGPKGIPGNHG---IPGPKGETGPFGPAGLPGAKGERGASGL 384
Query: 228 ---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
PG P L GP P LPGP P + GP
Sbjct: 385 DGKPGYPGEPGLSGPKGNPGLPGPKGDPGVEGPR 418
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 61/160 (38%), Gaps = 13/160 (8%)
Query: 145 DLPGPSSA-----PDLPGPSSAPDLPGPSSAPDLPGPSS--APDLPGPSSAPDLPGPSSA 197
+ P +A P +PG P PG + P PG P L G LPG A
Sbjct: 262 GIGKPGAAGAPGQPGIPGTKGHPGAPGIAGPPGAPGFGKPGLPGLKGQRGPVGLPGSPGA 321
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
GP+ P PG + P GP +PG +PGP GP+ P G
Sbjct: 322 KGEQGPAGHPGEPGLTGPPGNMGPQGPKGIPGNHG---IPGPKGETGPFGPAGLPGAKGE 378
Query: 258 SSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
A L PG P L GP P LPGP P + GP
Sbjct: 379 RGASGLDGKPGYPGEPGLSGPKGNPGLPGPKGDPGVEGPR 418
>gi|194880935|ref|XP_001974608.1| GG20998 [Drosophila erecta]
gi|190657795|gb|EDV55008.1| GG20998 [Drosophila erecta]
Length = 517
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 122/219 (55%), Gaps = 3/219 (1%)
Query: 35 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 94
AP P+ P ++ P+ P ++ P++P ++ P+ P ++ P+ P ++ P+ P
Sbjct: 236 APVTTT---TPEAPVTTTTPEAPVTTTTPEVPVTTTTPEAPVTTTTPEAPVTTTTPEAPV 292
Query: 95 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 154
++ P+ P ++ P+ P ++ P+ P ++ P+ P ++ P+ P ++ P+ P ++ P+
Sbjct: 293 TTTTPEAPVTTTTPEAPVTTTTPEAPVTTTTPEAPVTTTTPEAPVTTTTPEAPVTTTTPE 352
Query: 155 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 214
P ++ P++P ++ P+ P ++ P+ P ++ P+ P ++ P++P ++ P+ P ++
Sbjct: 353 APVTTTTPEVPVTTTTPEAPVTTTTPEAPVTTTTPEAPITTTTPEVPVTTTTPEAPVTTT 412
Query: 215 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
P+ P ++ P+ P ++ P+ P ++ P+ P ++ P+
Sbjct: 413 TPEAPVTTTTPEAPVTTTTPEAPVTTTTPEAPVTTTTPE 451
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 122/219 (55%), Gaps = 3/219 (1%)
Query: 53 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 112
AP P+ P ++ P+ P ++ P++P ++ P+ P ++ P+ P ++ P+ P
Sbjct: 236 APVTTT---TPEAPVTTTTPEAPVTTTTPEVPVTTTTPEAPVTTTTPEAPVTTTTPEAPV 292
Query: 113 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 172
++ P+ P ++ P+ P ++ P+ P ++ P+ P ++ P+ P ++ P+ P ++ P+
Sbjct: 293 TTTTPEAPVTTTTPEAPVTTTTPEAPVTTTTPEAPVTTTTPEAPVTTTTPEAPVTTTTPE 352
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
P ++ P++P ++ P+ P ++ P+ P ++ P+ P ++ P++P ++ P+ P ++
Sbjct: 353 APVTTTTPEVPVTTTTPEAPVTTTTPEAPVTTTTPEAPITTTTPEVPVTTTTPEAPVTTT 412
Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 271
P+ P ++ P+ P ++ P+ P ++ P+ P ++ P+
Sbjct: 413 TPEAPVTTTTPEAPVTTTTPEAPVTTTTPEAPVTTTTPE 451
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 122/219 (55%), Gaps = 3/219 (1%)
Query: 62 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 121
AP P+ P ++ P+ P ++ P++P ++ P+ P ++ P+ P ++ P+ P
Sbjct: 236 APVTTT---TPEAPVTTTTPEAPVTTTTPEVPVTTTTPEAPVTTTTPEAPVTTTTPEAPV 292
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
++ P+ P ++ P+ P ++ P+ P ++ P+ P ++ P+ P ++ P+ P ++ P+
Sbjct: 293 TTTTPEAPVTTTTPEAPVTTTTPEAPVTTTTPEAPVTTTTPEAPVTTTTPEAPVTTTTPE 352
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
P ++ P++P ++ P+ P ++ P+ P ++ P+ P ++ P++P ++ P+ P ++
Sbjct: 353 APVTTTTPEVPVTTTTPEAPVTTTTPEAPVTTTTPEAPITTTTPEVPVTTTTPEAPVTTT 412
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 280
P+ P ++ P+ P ++ P+ P ++ P+ P ++ P+
Sbjct: 413 TPEAPVTTTTPEAPVTTTTPEAPVTTTTPEAPVTTTTPE 451
>gi|307181545|gb|EFN69107.1| Collagen alpha-1(I) chain [Camponotus floridanus]
Length = 1490
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 77/197 (39%), Gaps = 20/197 (10%)
Query: 27 PDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSA 80
P L G P L G P L PG + +P L G + A + G S A P L GP
Sbjct: 870 PGLKGDRGYPGLKGEQGNPGLSGSPGEAGSPGLIGLTGAKGIRGESGARGEPGLMGPPGI 929
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
P GP+ +P G AP LPG A DL P PGP P LPG + G
Sbjct: 930 PGHVGPAGSPGNIGSPGAPGLPGAKGDAGDL----GRPGNPGPIGNPGLPG------MDG 979
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
PGP L GP L G P LPG + G AP G P
Sbjct: 980 NKGESGSPGPQGLDGLQGPQG---LSGERGLPGLPGSPGSIGNRGLHGAPGETGQPGKPG 1036
Query: 200 LPGPSSAPDLPGPSSAP 216
GP +P L GP +P
Sbjct: 1037 TEGPPGSPGLVGPPGSP 1053
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 76/198 (38%), Gaps = 23/198 (11%)
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
PGP PG + P GP LPG P G P L G P L G
Sbjct: 831 PGPPGFIGEPGAAGKPGDTGPQGLQGLPG---FPGQQGLIGLPGLKGDRGYPGLKGEQGN 887
Query: 162 PDL---PGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 215
P L PG + +P L G + A + G S A P L GP P GP+ +P G A
Sbjct: 888 PGLSGSPGEAGSPGLIGLTGAKGIRGESGARGEPGLMGPPGIPGHVGPAGSPGNIGSPGA 947
Query: 216 PDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
P LPG A DL P PGP P LPG + G PGP L G
Sbjct: 948 PGLPGAKGDAGDL----GRPGNPGPIGNPGLPG------MDGNKGESGSPGPQGLDGLQG 997
Query: 275 PSSAPDLPGPSSAPDLPG 292
P L G P LPG
Sbjct: 998 PQG---LSGERGLPGLPG 1012
Score = 41.6 bits (96), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 92/287 (32%), Gaps = 45/287 (15%)
Query: 48 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 107
PG +P PG P LPG G +P PGP+ LPG P + G
Sbjct: 258 PGSPGSPGAPGSRGLPGLPGKDGINGEDGEIGSPGSPGPAGLRGLPGMPGLPGIKGHRGF 317
Query: 108 PDLPGPSSAPDLPGPSSAPDLPGPSS--APDLP-GPSSAPDLPGPSSAPDLPGPSSA--- 161
P L G + G + PGP P P GP G S P L GP
Sbjct: 318 PGLDGAKGEQGVSGEKGSTGAPGPMGPIGPMGPAGPRGERGREGSSGPPGLRGPDGIIGP 377
Query: 162 PDLP------------------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
P P GP + L GP PG P GP A
Sbjct: 378 PGQPGAVGKPGPPGFPGIPGSKGDQGSQGPKGSQGLQGPRGESGRPG---QPGETGPQGA 434
Query: 198 PDL---PGPSSAPDLPGPSSAPDLPGP------SSAPDLPGPSSAPDLPGPSSAPDLPGP 248
PG A GP P PGP S P +PG A LPG G
Sbjct: 435 QGKDGSPGEKGATGAIGPVGLPGFPGPRGQLGESGNPGIPGAKGASGLPGERGFKGDSGV 494
Query: 249 SSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PGP P P G + GP A PG AP + G
Sbjct: 495 KGDTGMPGPRGLPGAPGNEGKRGKRGMRGPIGATGPPGERGAPGMRG 541
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 96/273 (35%), Gaps = 44/273 (16%)
Query: 39 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 98
PGP PG + P GP LPG P G P L G P L G
Sbjct: 831 PGPPGFIGEPGAAGKPGDTGPQGLQGLPG---FPGQQGLIGLPGLKGDRGYPGLKGEQGN 887
Query: 99 PDL---PGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 152
P L PG + +P L G + A + G S A P L GP P GP+ +P G A
Sbjct: 888 PGLSGSPGEAGSPGLIGLTGAKGIRGESGARGEPGLMGPPGIPGHVGPAGSPGNIGSPGA 947
Query: 153 PDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
P LPG A DL P PGP P LPG + G PGP L G
Sbjct: 948 PGLPGAKGDAGDL----GRPGNPGPIGNPGLPG------MDGNKGESGSPGPQGLDGLQG 997
Query: 212 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 271
P L G P LPG + G AP G P GP +P L GP +P
Sbjct: 998 PQG---LSGERGLPGLPGSPGSIGNRGLHGAPGETGQPGKPGTEGPPGSPGLVGPPGSPG 1054
Query: 272 LPGPSSA---------------------PDLPG 283
G P +PG
Sbjct: 1055 HVGEIGPEGPIGKPGPPGIGGRPGDKGPPGIPG 1087
>gi|281342748|gb|EFB18332.1| hypothetical protein PANDA_015150 [Ailuropoda melanoleuca]
Length = 1346
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 71/192 (36%), Gaps = 35/192 (18%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
DL G PG P + GP LPG P PG S P LPGPS GP
Sbjct: 614 DLLGSKGEKGDPGLPGIPGVSGPKGYQGLPG---DPGQPGLSGQPGLPGPS------GPK 664
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPGPS 132
P LPG P L GP P L G PGP P LPG
Sbjct: 665 GNPGLPG---KPGLTGP---PGLKGSIGDMGFPGPQGVKGSPGPPGVPGQPGSPGLPGQK 718
Query: 133 SAPDLPGPSSA--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
PG S P LPGP P LPG P + G LPG P PG P
Sbjct: 719 GEKGDPGVSGIGLPGLPGPKGEPGLPGYPGNPGIKGSRGDTGLPG---LPGTPGAKGQPG 775
Query: 191 LPGPSSAPDLPG 202
LPG P LPG
Sbjct: 776 LPGFPGTPGLPG 787
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 58/158 (36%), Gaps = 23/158 (14%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
P P +P PG S P LPGPS PG P L GP P L G PG
Sbjct: 636 PKGYQGLPGDPGQPGLSGQPGLPGPSGPKGNPGLPGKPGLTGP---PGLKGSIGDMGFPG 692
Query: 77 PSSA---------------PDLPGPSSAPDLPGPSSA--PDLPGPSSAPDLPGPSSAPDL 119
P P LPG PG S P LPGP P LPG P +
Sbjct: 693 PQGVKGSPGPPGVPGQPGSPGLPGQKGEKGDPGVSGIGLPGLPGPKGEPGLPGYPGNPGI 752
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
G LPG P PG P LPG P LPG
Sbjct: 753 KGSRGDTGLPG---LPGTPGAKGQPGLPGFPGTPGLPG 787
>gi|348563737|ref|XP_003467663.1| PREDICTED: collagen alpha-5(IV) chain-like [Cavia porcellus]
Length = 1605
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 66/179 (36%), Gaps = 29/179 (16%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EP LPG P + GP LPG P L G P LPGP P LPG P L G
Sbjct: 882 EPGLPG---VPGVSGPKGYQGLPGDPGQPGLSGQPGLPGLPGPKGDPGLPG---QPGLIG 935
Query: 86 PSSAPDLPGPSSAPDLPGPSSA---------------PDLPGPSSAPDLPGPSSA--PDL 128
P+ L G PGP P LPG PG S P +
Sbjct: 936 PTG---LKGNIGDMGFPGPQGVEGLPGPPGVPGQPGSPGLPGQKGDKGDPGISGIGLPGV 992
Query: 129 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
GP P PG P + G LPG P PG P LPG P LPGP
Sbjct: 993 AGPKGEPGQPGIPGNPGIKGSMGVTGLPG---LPGTPGAKGQPGLPGFPGTPGLPGPKG 1048
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 66/183 (36%), Gaps = 29/183 (15%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
G P LPG P + GP LPG P L G P LPGP P LPG P
Sbjct: 878 GEKGEPGLPG---VPGVSGPKGYQGLPGDPGQPGLSGQPGLPGLPGPKGDPGLPG---QP 931
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPGPSSAPDLPGPSSA- 134
L GP+ L G PGP P LPG PG S
Sbjct: 932 GLIGPTG---LKGNIGDMGFPGPQGVEGLPGPPGVPGQPGSPGLPGQKGDKGDPGISGIG 988
Query: 135 -PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
P + GP P PG P + G LPG P PG P LPG P LPG
Sbjct: 989 LPGVAGPKGEPGQPGIPGNPGIKGSMGVTGLPG---LPGTPGAKGQPGLPGFPGTPGLPG 1045
Query: 194 PSS 196
P
Sbjct: 1046 PKG 1048
>gi|301780420|ref|XP_002925629.1| PREDICTED: collagen alpha-5(IV) chain-like [Ailuropoda melanoleuca]
Length = 1691
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 71/192 (36%), Gaps = 35/192 (18%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
DL G PG P + GP LPG P PG S P LPGPS GP
Sbjct: 958 DLLGSKGEKGDPGLPGIPGVSGPKGYQGLPG---DPGQPGLSGQPGLPGPS------GPK 1008
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPGPS 132
P LPG P L GP P L G PGP P LPG
Sbjct: 1009 GNPGLPG---KPGLTGP---PGLKGSIGDMGFPGPQGVKGSPGPPGVPGQPGSPGLPGQK 1062
Query: 133 SAPDLPGPSSA--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
PG S P LPGP P LPG P + G LPG P PG P
Sbjct: 1063 GEKGDPGVSGIGLPGLPGPKGEPGLPGYPGNPGIKGSRGDTGLPG---LPGTPGAKGQPG 1119
Query: 191 LPGPSSAPDLPG 202
LPG P LPG
Sbjct: 1120 LPGFPGTPGLPG 1131
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 58/158 (36%), Gaps = 23/158 (14%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
P P +P PG S P LPGPS PG P L GP P L G PG
Sbjct: 980 PKGYQGLPGDPGQPGLSGQPGLPGPSGPKGNPGLPGKPGLTGP---PGLKGSIGDMGFPG 1036
Query: 77 PSSA---------------PDLPGPSSAPDLPGPSSA--PDLPGPSSAPDLPGPSSAPDL 119
P P LPG PG S P LPGP P LPG P +
Sbjct: 1037 PQGVKGSPGPPGVPGQPGSPGLPGQKGEKGDPGVSGIGLPGLPGPKGEPGLPGYPGNPGI 1096
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
G LPG P PG P LPG P LPG
Sbjct: 1097 KGSRGDTGLPG---LPGTPGAKGQPGLPGFPGTPGLPG 1131
>gi|345326409|ref|XP_001509910.2| PREDICTED: collagen alpha-1(XXIV) chain, partial [Ornithorhynchus
anatinus]
Length = 1206
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 76/235 (32%), Gaps = 20/235 (8%)
Query: 58 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 117
G P PG P G GP+ GP GP A GP+
Sbjct: 973 GSEGTPGNPGERGRPGRKGEKGQM---GPAGEVGSTGPPGQLGEGGPKGARGTRGPAGPL 1029
Query: 118 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 177
GP P +PG PGPS LPGP PG S GP A PGP
Sbjct: 1030 GSMGPEGEPGIPGYGGHQGQPGPSG---LPGPKGEKGFPGEDSGSR--GPPGALGEPGPI 1084
Query: 178 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
G G +PG A GP P PG P L G +
Sbjct: 1085 GERGDRGDHGDEGYKGHRG---VPGHRGAIGQQGP---PGEPGDLGQPGLKGERGSQGPK 1138
Query: 238 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G A PG +P L GP PG P PG P PG + P PG
Sbjct: 1139 GKKGASGPPGKRGSPGLAGP------PGQKGTPGYPGAEGLPGNPGKAGLPGSPG 1187
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 71/215 (33%), Gaps = 11/215 (5%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P E PG GP+ GP GP A GP+ GP P +
Sbjct: 981 PGERGRPGRKGEKGQMGPAGEVGSTGPPGQLGEGGPKGARGTRGPAGPLGSMGPEGEPGI 1040
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
PG PGPS LPGP PG S GP A PGP G
Sbjct: 1041 PGYGGHQGQPGPSG---LPGPKGEKGFPGEDSGSR--GPPGALGEPGPIGERGDRGDHGD 1095
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
G +PG A GP P PG P L G + G A PG
Sbjct: 1096 EGYKGHRG---VPGHRGAIGQQGP---PGEPGDLGQPGLKGERGSQGPKGKKGASGPPGK 1149
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
+P L GP PG A LPG LPG
Sbjct: 1150 RGSPGLAGPPGQKGTPGYPGAEGLPGNPGKAGLPG 1184
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 73/226 (32%), Gaps = 14/226 (6%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
G P PG P G GP+ GP GP A GP+
Sbjct: 973 GSEGTPGNPGERGRPGRKGEKGQM---GPAGEVGSTGPPGQLGEGGPKGARGTRGPAGPL 1029
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
GP P +PG PGPS LPGP PG S GP A PGP
Sbjct: 1030 GSMGPEGEPGIPGYGGHQGQPGPSG---LPGPKGEKGFPGEDSGSR--GPPGALGEPGPI 1084
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
G G +PG A GP P PG P L G +
Sbjct: 1085 GERGDRGDHGDEGYKGHRG---VPGHRGAIGQQGP---PGEPGDLGQPGLKGERGSQGPK 1138
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
G A PG +P L GP PG A LPG LPG
Sbjct: 1139 GKKGASGPPGKRGSPGLAGPPGQKGTPGYPGAEGLPGNPGKAGLPG 1184
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 73/226 (32%), Gaps = 14/226 (6%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
G P PG P G GP+ GP GP A GP+
Sbjct: 973 GSEGTPGNPGERGRPGRKGEKGQM---GPAGEVGSTGPPGQLGEGGPKGARGTRGPAGPL 1029
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 159
GP P +PG PGPS LPGP PG S GP A PGP
Sbjct: 1030 GSMGPEGEPGIPGYGGHQGQPGPSG---LPGPKGEKGFPGEDSGSR--GPPGALGEPGPI 1084
Query: 160 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
G G +PG A GP P PG P L G +
Sbjct: 1085 GERGDRGDHGDEGYKGHRG---VPGHRGAIGQQGP---PGEPGDLGQPGLKGERGSQGPK 1138
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
G A PG +P L GP PG A LPG LPG
Sbjct: 1139 GKKGASGPPGKRGSPGLAGPPGQKGTPGYPGAEGLPGNPGKAGLPG 1184
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 73/226 (32%), Gaps = 14/226 (6%)
Query: 49 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 108
G P PG P G GP+ GP GP A GP+
Sbjct: 973 GSEGTPGNPGERGRPGRKGEKGQM---GPAGEVGSTGPPGQLGEGGPKGARGTRGPAGPL 1029
Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 168
GP P +PG PGPS LPGP PG S GP A PGP
Sbjct: 1030 GSMGPEGEPGIPGYGGHQGQPGPSG---LPGPKGEKGFPGEDSGSR--GPPGALGEPGPI 1084
Query: 169 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
G G +PG A GP P PG P L G +
Sbjct: 1085 GERGDRGDHGDEGYKGHRG---VPGHRGAIGQQGP---PGEPGDLGQPGLKGERGSQGPK 1138
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
G A PG +P L GP PG A LPG LPG
Sbjct: 1139 GKKGASGPPGKRGSPGLAGPPGQKGTPGYPGAEGLPGNPGKAGLPG 1184
>gi|50950201|ref|NP_001002979.1| collagen alpha-5(IV) chain precursor [Canis lupus familiaris]
gi|62512176|sp|Q28247.2|CO4A5_CANFA RecName: Full=Collagen alpha-5(IV) chain; Flags: Precursor
gi|46372001|gb|AAO33458.2|AF470624_1 type IV collagen alpha 5 [Canis lupus familiaris]
Length = 1691
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 71/195 (36%), Gaps = 35/195 (17%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
DL G PG P + GP LPG P PG S P LPGPS GP
Sbjct: 958 DLLGSKGEKGDPGLPGIPGVSGPKGYQGLPG---DPGQPGLSGQPGLPGPS------GPK 1008
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPGPS 132
P LPG P L GP P L G PGP P LPG
Sbjct: 1009 GNPGLPG---KPGLTGP---PGLKGSIGDMGFPGPQGVKGSPGPPGVPGQPGSPGLPGQK 1062
Query: 133 SAPDLPGPSSA--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
PG S P LPGP LPG P + G LPG P PG P
Sbjct: 1063 GEKGDPGVSGIGLPGLPGPKGEAGLPGYPGNPGIKGSMGDTGLPG---LPGTPGAKGQPG 1119
Query: 191 LPGPSSAPDLPGPSS 205
LPG P LPGP
Sbjct: 1120 LPGFPGTPGLPGPKG 1134
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 58/161 (36%), Gaps = 23/161 (14%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
P P +P PG S P LPGPS PG P L GP P L G PG
Sbjct: 980 PKGYQGLPGDPGQPGLSGQPGLPGPSGPKGNPGLPGKPGLTGP---PGLKGSIGDMGFPG 1036
Query: 77 PSSA---------------PDLPGPSSAPDLPGPSSA--PDLPGPSSAPDLPGPSSAPDL 119
P P LPG PG S P LPGP LPG P +
Sbjct: 1037 PQGVKGSPGPPGVPGQPGSPGLPGQKGEKGDPGVSGIGLPGLPGPKGEAGLPGYPGNPGI 1096
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
G LPG P PG P LPG P LPGP
Sbjct: 1097 KGSMGDTGLPG---LPGTPGAKGQPGLPGFPGTPGLPGPKG 1134
>gi|397509824|ref|XP_003825312.1| PREDICTED: collagen alpha-1(III) chain [Pan paniscus]
Length = 1466
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 105/276 (38%), Gaps = 18/276 (6%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E LPGP P + GP+ P PG G + G + AP L G +
Sbjct: 238 RPGERGLPGP---PGIKGPAGIPGFPGMKGHRGFDGRNGEK---GETGAPGLKGENG--- 288
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG + AP GP AP G P LPG + A G + PGP P G
Sbjct: 289 LPGENGAPGPMGPRGAP---GERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPG 345
Query: 143 APDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
+P G PG + AP PGP GP P + G GP+ P
Sbjct: 346 SPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPG 405
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPG 256
PG A PGP+ A PG PG + A PGP +PG A G
Sbjct: 406 APGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDG 465
Query: 257 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+P PG + P G AP GP+ +PG
Sbjct: 466 KDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501
>gi|350590051|ref|XP_003131140.3| PREDICTED: collagen alpha-2(IV) chain [Sus scrofa]
Length = 1739
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 78/206 (37%), Gaps = 30/206 (14%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
DLPG +P L G +PG G PG + + GP P L G +
Sbjct: 1125 DLPG---SPGLKGERGTAGVPGLKGFFGEKGTVGDVGFPGITGLAGVQGP---PGLKGQT 1178
Query: 88 SAPDLPG-------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
P L G P A +PG PG P LPG + G S LPG
Sbjct: 1179 GFPGLTGLQGPQGDPGRA-GVPGAKGELGWPGNVGLPGLPG------IRGISGLHGLPGT 1231
Query: 141 SSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
P PG P PGP A D P A LPGP+ AP G AP GP P
Sbjct: 1232 KGFPGSPGADVHGDPGFPGP--AGDRGDPGEANTLPGPAGAPGQKGERGAPGERGPVGNP 1289
Query: 199 DLPG------PSSAPDLPGPSSAPDL 218
L G PS+ LPG + AP +
Sbjct: 1290 GLQGFPGITPPSNVSGLPGDTGAPGI 1315
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 99/288 (34%), Gaps = 38/288 (13%)
Query: 24 PLEPDLPGPSSAPDLPG-PSSAPDLPGPSSAP--------------------DLPGPSSA 62
P P +PG S P LPG P G + AP PG + +
Sbjct: 1036 PGMPGIPGLSGVPGLPGKPGHVKGAKGDTGAPAPGVPGSPGFPGLPGPPGIIGFPGFTGS 1095
Query: 63 PDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 121
G L G A D DLPG +P L G +PG G
Sbjct: 1096 RGDKGSPGRAGLYGEIGATGDFGDIGDTIDLPG---SPGLKGERGTAGVPGLKGFFGEKG 1152
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
PG + + GP P L G + P L G PG + P G P
Sbjct: 1153 TVGDVGFPGITGLAGVQGP---PGLKGQTGFPGLTGLQGPQGDPGRAGVPGAKGELGWPG 1209
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGP 239
G P + G S LPG P PG P PGP A D P A LPGP
Sbjct: 1210 NVGLPGLPGIRGISGLHGLPGTKGFPGSPGADVHGDPGFPGP--AGDRGDPGEANTLPGP 1267
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDL 281
+ AP G AP GP P L G PS+ LPG + AP +
Sbjct: 1268 AGAPGQKGERGAPGERGPVGNPGLQGFPGITPPSNVSGLPGDTGAPGI 1315
>gi|27461187|gb|AAL83712.1| type IV collagen alpha 5 chain [Canis lupus familiaris]
Length = 1684
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 71/195 (36%), Gaps = 35/195 (17%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
DL G PG P + GP LPG P PG S P LPGPS GP
Sbjct: 958 DLLGSKGEKGDPGLPGIPGVSGPKGYQGLPG---DPGQPGLSGQPGLPGPS------GPK 1008
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPGPS 132
P LPG P L GP P L G PGP P LPG
Sbjct: 1009 GNPGLPG---KPGLTGP---PGLKGSIGDMGFPGPQGVKGSPGPPGVPGQPGSPGLPGQK 1062
Query: 133 SAPDLPGPSSA--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
PG S P LPGP LPG P + G LPG P PG P
Sbjct: 1063 GEKGDPGVSGIGLPGLPGPKGEAGLPGYPGNPGIKGSMGDTGLPG---LPGTPGAKGQPG 1119
Query: 191 LPGPSSAPDLPGPSS 205
LPG P LPGP
Sbjct: 1120 LPGFPGTPGLPGPKG 1134
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 58/161 (36%), Gaps = 23/161 (14%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
P P +P PG S P LPGPS PG P L GP P L G PG
Sbjct: 980 PKGYQGLPGDPGQPGLSGQPGLPGPSGPKGNPGLPGKPGLTGP---PGLKGSIGDMGFPG 1036
Query: 77 PSSA---------------PDLPGPSSAPDLPGPSSA--PDLPGPSSAPDLPGPSSAPDL 119
P P LPG PG S P LPGP LPG P +
Sbjct: 1037 PQGVKGSPGPPGVPGQPGSPGLPGQKGEKGDPGVSGIGLPGLPGPKGEAGLPGYPGNPGI 1096
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
G LPG P PG P LPG P LPGP
Sbjct: 1097 KGSMGDTGLPG---LPGTPGAKGQPGLPGFPGTPGLPGPKG 1134
>gi|281351911|gb|EFB27495.1| hypothetical protein PANDA_007210 [Ailuropoda melanoleuca]
Length = 1440
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 105/282 (37%), Gaps = 30/282 (10%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E LPGP P + GP+ P PG G + G + AP L G +
Sbjct: 212 RPGERGLPGP---PGMKGPAGMPGFPGMKGHRGFDGRNGE---KGDTGAPGLKGENG--- 262
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG + AP GP A PG P LPG + A G + PGP P G
Sbjct: 263 LPGENGAPGPMGPRGA---PGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPG 319
Query: 143 APDLPGP------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
+P G PGP PGP P G GP+ P
Sbjct: 320 SPGAKGEVGPAGSPGSSGSPGQRGEPGPQGHAGAPGPPGPPGSNGSPGGKGEMGPAGIPG 379
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
PG A PGP+ PG A PG + A PGP G + +P +PGP
Sbjct: 380 APGLIGARGPPGPAGTNGAPGQRGAAGEPGKNGAKGEPGPRGE---RGEAGSPGIPGPKG 436
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G +P PG + P G AP GP+ A LPG
Sbjct: 437 E---DGKDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPG 475
>gi|124056490|sp|P02461.4|CO3A1_HUMAN RecName: Full=Collagen alpha-1(III) chain; Flags: Precursor
gi|62988777|gb|AAY24164.1| unknown [Homo sapiens]
gi|270048012|gb|ACZ58371.1| collagen, type III, alpha 1 [Homo sapiens]
Length = 1466
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 105/276 (38%), Gaps = 18/276 (6%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E LPGP P + GP+ P PG G + G + AP L G +
Sbjct: 238 RPGERGLPGP---PGIKGPAGIPGFPGMKGHRGFDGRNGEK---GETGAPGLKGENG--- 288
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG + AP GP AP G P LPG + A G + PGP P G
Sbjct: 289 LPGENGAPGPMGPRGAP---GERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPG 345
Query: 143 APDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
+P G PG + AP PGP GP P + G GP+ P
Sbjct: 346 SPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPG 405
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPG 256
PG A PGP+ A PG PG + A PGP +PG A G
Sbjct: 406 APGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDG 465
Query: 257 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+P PG + P G AP GP+ +PG
Sbjct: 466 KDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501
>gi|4502951|ref|NP_000081.1| collagen alpha-1(III) chain preproprotein [Homo sapiens]
gi|114582176|ref|XP_001163809.1| PREDICTED: collagen alpha-1(III) chain isoform 10 [Pan troglodytes]
gi|30058|emb|CAA32583.1| prepro-alpha-1 type 3 collagen [Homo sapiens]
gi|16197601|gb|AAL13167.1| type III preprocollagen alpha 1 chain [Homo sapiens]
gi|119631315|gb|EAX10910.1| collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV,
autosomal dominant), isoform CRA_b [Homo sapiens]
gi|119631316|gb|EAX10911.1| collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV,
autosomal dominant), isoform CRA_b [Homo sapiens]
gi|168277510|dbj|BAG10733.1| collagen alpha-1(III) chain precursor [synthetic construct]
Length = 1466
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 105/276 (38%), Gaps = 18/276 (6%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E LPGP P + GP+ P PG G + G + AP L G +
Sbjct: 238 RPGERGLPGP---PGIKGPAGIPGFPGMKGHRGFDGRNGEK---GETGAPGLKGENG--- 288
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG + AP GP AP G P LPG + A G + PGP P G
Sbjct: 289 LPGENGAPGPMGPRGAP---GERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPG 345
Query: 143 APDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
+P G PG + AP PGP GP P + G GP+ P
Sbjct: 346 SPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPG 405
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPG 256
PG A PGP+ A PG PG + A PGP +PG A G
Sbjct: 406 APGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDG 465
Query: 257 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+P PG + P G AP GP+ +PG
Sbjct: 466 KDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501
>gi|327275855|ref|XP_003222687.1| PREDICTED: collagen alpha-1(I) chain-like [Anolis carolinensis]
Length = 1450
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 97/277 (35%), Gaps = 30/277 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E GP+ AP G LPGP+ AP G +PG AP G PG
Sbjct: 616 ERGEQGPAGAPGFQG------LPGPAGAPGESGKPGEQGVPGDVGAPGPSGARGERGFPG 669
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
GP+ GP A PG A G AP GP +PG A
Sbjct: 670 ERGVQGPAGPA------GPRGANGAPGNDGAKGDAGAPGAPGNQGPPGLQGMPGERGAAG 723
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--------------SSAPDLP-GPSSAPD 190
LPG PGP PG L GP + P P GP+ A
Sbjct: 724 LPGAKGDRGDPGPKGVDGAPGKDGVRGLTGPIGPPGPAGATGDKGEAGPSGPAGPTGARG 783
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
PG P GP+ PG P G S G + AP GP+ A PGP+
Sbjct: 784 APGDRGEPGPAGPAGFAGPPGADGQPGAKGESGDAGAKGDAGAP---GPAGATGPPGPAG 840
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 287
A PGP + GP A PG + PGPS
Sbjct: 841 AVGAPGPKGSRGSAGPPGATGFPGAAGRVGPPGPSGN 877
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 96/273 (35%), Gaps = 30/273 (10%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P E PGP+ A PG S P PG P + G + +P PGP GP+
Sbjct: 494 PGERGSPGPAGAKGSPGESGRPGEPG---LPGVKGLTGSPGSPGPDGKTGPTGPAGQDGR 550
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAP----- 135
PGP+ P G + PGP A P PG AP G AP G + A
Sbjct: 551 PGPAGPPGARGQAGVMGFPGPKGAAGEPGKPGERGAPGAVGAVGAPGKDGETGAQGPPGP 610
Query: 136 -------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
GP+ AP G LPGP+ AP G +PG AP G
Sbjct: 611 TGPAGERGEQGPAGAPGFQG------LPGPAGAPGESGKPGEQGVPGDVGAPGPSGARGE 664
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
PG GP+ GP A PG A G AP GP +PG
Sbjct: 665 RGFPGERGVQGPAGPA------GPRGANGAPGNDGAKGDAGAPGAPGNQGPPGLQGMPGE 718
Query: 249 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
A LPG PGP PG L
Sbjct: 719 RGAAGLPGAKGDRGDPGPKGVDGAPGKDGVRGL 751
>gi|322792823|gb|EFZ16656.1| hypothetical protein SINV_06590 [Solenopsis invicta]
Length = 1695
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 83/255 (32%), Gaps = 21/255 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
L GP P +PG LPG +P LPG P + G P G P + G
Sbjct: 599 LVGPQGKPGIPG------LPGADGSPGLPGNPGTPGMKGEQGPPGSQGSIGFPGVRGVKG 652
Query: 89 APDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
GPS G PG P + GP P L G GP
Sbjct: 653 DEGQRGPSGDRGEKGERGMEGEKGDPGAKGEPGVTGPQGIPGLEGLEGPKGFEGPRGETG 712
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPG 202
L G G P PG P G + GPS G S +PG
Sbjct: 713 LAGLLGEK---GKMGIPGYPGYPGNPGEKGDKGQLGVQGPSGDKGERGNSGLQGERGVPG 769
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P G A LPGP PGP+ + GP P + GP PGPS P
Sbjct: 770 PRGFRGTRGRRGAEGLPGPKGDTGQPGPAGSSGEVGP---PGVEGPRG---FPGPSGLPG 823
Query: 263 LPGPSSAPDLPGPSS 277
L G P PG
Sbjct: 824 LDGKDGIPGPPGERG 838
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 74/240 (30%), Gaps = 27/240 (11%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P P LPG +P LPG P + G P G P + G GPS
Sbjct: 605 KPGIPGLPGADGSPGLPGNPGTPGMKGEQGPPGSQGSIGFPGVRGVKGDEGQRGPSGDRG 664
Query: 83 LPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------PGPSS 133
G PG P + GP P L G GP L G
Sbjct: 665 EKGERGMEGEKGDPGAKGEPGVTGPQGIPGLEGLEGPKGFEGPRGETGLAGLLGEKGKMG 724
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------------PSSAPD 181
P PG P G + GPS G S G A
Sbjct: 725 IPGYPGYPGNPGEKGDKGQLGVQGPSGDKGERGNSGLQGERGVPGPRGFRGTRGRRGAEG 784
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
LPGP PGP+ + GP P + GP PGPS P L G P PG
Sbjct: 785 LPGPKGDTGQPGPAGSSGEVGP---PGVEGPRG---FPGPSGLPGLDGKDGIPGPPGERG 838
>gi|115326|sp|P08125.4|COAA1_CHICK RecName: Full=Collagen alpha-1(X) chain; Flags: Precursor
Length = 674
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 71/177 (40%), Gaps = 21/177 (11%)
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
GP+ P GP+ GP LPG + LPGP D+ GP PG
Sbjct: 319 GPAGVPGELGPAGPQGNMGPQGLKGLPGENG---LPGPKG--DM-GPVGPAGFPGAKGER 372
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
LPG P PG LPGP P LPG G + P LPGP GP
Sbjct: 373 GLPGLDGKPGYPGEQG---LPGPKGHPGLPGQKGDT---GHAGHPGLPGPV------GPQ 420
Query: 241 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+PG + P GPS +PG PG AP G + AP LPGP+ V
Sbjct: 421 GVKGVPGINGEPGPRGPSG---IPGVRGPIGPPGMPGAPGAKGEAGAPGLPGPAGIV 474
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 82/218 (37%), Gaps = 35/218 (16%)
Query: 47 LPGPSSAPDLPG--PSSAPDLPGPSSAPDL------------PGPSSAPDLPGPSSAPDL 92
LPGP+ P PG P LPG GP+ P GP+
Sbjct: 276 LPGPAGLPGSPGLPGFGKPGLPGMKGHRGPEGPPGFPGPKGDQGPAGVPGELGPAGPQGN 335
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
GP LPG + LPGP D+ GP PG LPG P PG
Sbjct: 336 MGPQGLKGLPGENG---LPGPKG--DM-GPVGPAGFPGAKGERGLPGLDGKPGYPGEQG- 388
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
LPGP P LPG G + P LPGP GP +PG + P GP
Sbjct: 389 --LPGPKGHPGLPGQKGD---TGHAGHPGLPGPV------GPQGVKGVPGINGEPGPRGP 437
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
S +PG PG AP G + AP LPGP+
Sbjct: 438 SG---IPGVRGPIGPPGMPGAPGAKGEAGAPGLPGPAG 472
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 58/155 (37%), Gaps = 30/155 (19%)
Query: 12 EADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 71
+ + P + P E LPGP D+ GP PG LPG P PG
Sbjct: 333 QGNMGPQGLKGLPGENGLPGPKG--DM-GPVGPAGFPGAKGERGLPGLDGKPGYPGEQG- 388
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
LPGP P LPG G + P LPGP GP +PG + P GP
Sbjct: 389 --LPGPKGHPGLPGQKGDT---GHAGHPGLPGPV------GPQGVKGVPGINGEPGPRGP 437
Query: 132 SSAPDL---------------PGPSSAPDLPGPSS 151
S P + G + AP LPGP+
Sbjct: 438 SGIPGVRGPIGPPGMPGAPGAKGEAGAPGLPGPAG 472
>gi|327283159|ref|XP_003226309.1| PREDICTED: collagen alpha-1(XXVIII) chain-like [Anolis
carolinensis]
Length = 1076
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 47/124 (37%), Gaps = 5/124 (4%)
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
+PGP LPG + AP G PG P G + P LPG AP G
Sbjct: 482 VPGPKGDQGLPGETGAPGERGLGE----PGAKGEPGSSGLAGLPGLPGEDGAPGQKGEPG 537
Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P L GP AP + D G L GP+ G P +PG P LPG
Sbjct: 538 LPGLRGPEGAPGIGIQGEKGD-QGQRGIRGLSGPTGILGPAGAKGEPGVPGRLGMPGLPG 596
Query: 293 PSST 296
+ T
Sbjct: 597 RAIT 600
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 51/131 (38%), Gaps = 14/131 (10%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+PGP LPG + AP G PG P G + P LPG AP G
Sbjct: 482 VPGPKGDQGLPGETGAPGERGLGE----PGAKGEPGSSGLAGLPGLPGEDGAPGQKGEPG 537
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
P L GP AP + D G L GP+ + GP+ A PG +PG
Sbjct: 538 LPGLRGPEGAPGIGIQGEKGD-QGQRGIRGLSGPTG---ILGPAGAKGEPG------VPG 587
Query: 230 PSSAPDLPGPS 240
P LPG +
Sbjct: 588 RLGMPGLPGRA 598
>gi|410906875|ref|XP_003966917.1| PREDICTED: collagen alpha-2(IV) chain-like [Takifugu rubripes]
Length = 1699
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 65/186 (34%), Gaps = 6/186 (3%)
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPD 145
P PG + P PGP P LPG P LPG A PG P PG P
Sbjct: 977 KGEPGTPGSNGLPGFPGPRGLPGLPGRQGVPGLPGFAEQAKGQPGQPGFPGRPG---NPG 1033
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPS 204
PGP + G + L G AP LPG PG P D P G
Sbjct: 1034 YPGPKGEAGIMGFPGSSGLRGDDGAPGLPGEPGGYGRPGSKGQPGDFYAYPGGPGAKGER 1093
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDL 263
P PG PG + P PG PG P + G + P PGP P
Sbjct: 1094 GDPGFPGGRGNDGAPGDNGFPGSPGFPGVKGGPGEGGLPGVTGENGGPVGFPGPKGQPGF 1153
Query: 264 PGPSSA 269
PG A
Sbjct: 1154 PGRRGA 1159
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 73/196 (37%), Gaps = 38/196 (19%)
Query: 105 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD------LPGPSSAPDLPGPSSAPDLPGP 158
+ P G P + G P LPGP P +PG P +PG P PGP
Sbjct: 587 AGTPGFRGEPGEPGIYGLPGQPGLPGPRGQPGEVLPCSIPGEIGNPGIPG---IPGRPGP 643
Query: 159 SSAPDLPGPSSAPDLPGPS-------------------SAPDLPGPSSAPDLPG-PSSAP 198
P PG S P L G S+P PG P +PG P +
Sbjct: 644 KGQPGFPGGSGRPGLDGTKGERGDPGFGGQPGPQGCTLSSPGFPGQRGDPGVPGIPGQSF 703
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
D GPS LPG A LPG D+ G +S PG +P PG P PG S
Sbjct: 704 D--GPSGKDGLPGIPGAKGLPG-----DVLGATSGN--PGRDGSPGFPGDKGLPGTPGTS 754
Query: 259 SAPDLPGPSSAPDLPG 274
P G S P L G
Sbjct: 755 GLPGGDGRSGVPGLKG 770
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 50/144 (34%), Gaps = 3/144 (2%)
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
P PG + P PGP P LPG P LPG A G P PG P
Sbjct: 977 KGEPGTPGSNGLPGFPGPRGLPGLPGRQGVPGLPG--FAEQAKGQPGQPGFPGRPGNPGY 1034
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSS 259
PGP + G + L G AP LPG PG P D P G
Sbjct: 1035 PGPKGEAGIMGFPGSSGLRGDDGAPGLPGEPGGYGRPGSKGQPGDFYAYPGGPGAKGERG 1094
Query: 260 APDLPGPSSAPDLPGPSSAPDLPG 283
P PG PG + P PG
Sbjct: 1095 DPGFPGGRGNDGAPGDNGFPGSPG 1118
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 46/135 (34%), Gaps = 3/135 (2%)
Query: 159 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
P PG + P PGP P LPG P LPG A G P PG P
Sbjct: 977 KGEPGTPGSNGLPGFPGPRGLPGLPGRQGVPGLPG--FAEQAKGQPGQPGFPGRPGNPGY 1034
Query: 219 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSS 277
PGP + G + L G AP LPG PG P D P G
Sbjct: 1035 PGPKGEAGIMGFPGSSGLRGDDGAPGLPGEPGGYGRPGSKGQPGDFYAYPGGPGAKGERG 1094
Query: 278 APDLPGPSSAPDLPG 292
P PG PG
Sbjct: 1095 DPGFPGGRGNDGAPG 1109
>gi|345788853|ref|XP_534183.3| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-2(IV) chain [Canis
lupus familiaris]
Length = 1857
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 71/200 (35%), Gaps = 13/200 (6%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
+ P P L G PG G PG + P + GP P G +
Sbjct: 1241 IINLPGSPGLKGERGIAGAPGLKGFFGEKGTEGEVGFPGITGVPGVQGP---PGPKGQTG 1297
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
P L G PG + P G P +PG P + G S LPG P PG
Sbjct: 1298 FPGLTGLQGPQGDPGRAGVPGNKGDYGWPGIPGSPGFPGIRGISGLHGLPGTKGLPGTPG 1357
Query: 140 P--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---- 193
P PGP A D P A PGP AP G P GP +P L G
Sbjct: 1358 ADIHGDPGFPGP--AGDRGDPGEANIRPGPIGAPGQKGERGDPGGRGPIGSPGLQGFPGI 1415
Query: 194 --PSSAPDLPGPSSAPDLPG 211
PS+ LPG AP + G
Sbjct: 1416 TPPSNMSGLPGDKGAPGIFG 1435
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 69/197 (35%), Gaps = 15/197 (7%)
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
PGP LPG PG P G +PG P PG S P LPGPS
Sbjct: 926 PGPRGDAGLPGHPGLKGPPGERGPPGFRGSQGMLRMPGLKGQPGFPGLSGQPGLPGPSGQ 985
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDL 200
PG AP GP G S LPG P +PGP L G P L
Sbjct: 986 HGXPG---APAGRGPWGCQ---GASGRGGLPGDRGDPGDTGVPGPVGMKGLSGDRGDPGL 1039
Query: 201 ---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
GP +P G S P +PG PG + G P LPG G
Sbjct: 1040 LGERGPPGSPGFKGMSGMPGIPGQKGGRGSPGMDGFQGMVGLKGRPGLPGNKGEAGFFG- 1098
Query: 258 SSAPDLPGPSSAPDLPG 274
P L G + P + G
Sbjct: 1099 --IPGLKGLAGEPGVKG 1113
>gi|426353686|ref|XP_004044316.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(IX) chain [Gorilla
gorilla gorilla]
Length = 871
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 78/233 (33%), Gaps = 15/233 (6%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG S P LPG G P G G GP A L G +
Sbjct: 417 PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGI 476
Query: 90 PDLPGPSSAPDL---PGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G A L PGP P PG P GP G P LPGP
Sbjct: 477 VGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGPKGD 536
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
LPG +PG +PG P PGP L G P +PG G
Sbjct: 537 TGLPGVDGRDGIPG------MPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGS 590
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ AP PG PG P GP LPG S +L GP +P LPG
Sbjct: 591 TGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLPG--SRGEL-GPVGSPGLPG 640
>gi|301760031|ref|XP_002915835.1| PREDICTED: collagen alpha-1(XXVII) chain-like [Ailuropoda
melanoleuca]
Length = 1854
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 72/220 (32%), Gaps = 18/220 (8%)
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGP 149
PG S L G LPG S P G PGP+ P PGP +P G
Sbjct: 672 PGLSPGKALDGVKGDVGLPGLSGNPGPLGRKGYKGYPGPAGHPGEQGQPGPEGSPGAKGY 731
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
LPGP P G LPG P G P +PG PG P
Sbjct: 732 PGRQGLPGPVGDPGPKGSRGYIGLPGLFGFPGSDGERGLPGVPGKRGKMGRPG---FPGD 788
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDL------------PGPSSAPDLPGPSSAPDLPGP 257
G P L G LPGP P L PGP L G P L G
Sbjct: 789 FGERGPPGLDGNPGELGLPGPRGVPGLIGDMGALGPIGYPGPKGVKGLMGNMGEPGLKGD 848
Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+PG S G + LPG A PGP V
Sbjct: 849 KGEQGVPGVSGDTGFQGDKGSQGLPGFPGARGKPGPLGKV 888
>gi|359063347|ref|XP_002685685.2| PREDICTED: collagen alpha-4(IV) chain [Bos taurus]
Length = 1635
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 84/257 (32%), Gaps = 36/257 (14%)
Query: 36 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------- 85
P LPG S P PG + L G + P GP+ P PG G
Sbjct: 816 PGLPGKSGLPGAPG---SKGLRGDAGRPGTAGPAGMPGFPGLQGPKGREGNAGFPGIPGP 872
Query: 86 -----PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
AP +PG P PG AP G GP+ LPG P PG
Sbjct: 873 PGHSCERGAPGIPGQPGLPGAPGSPGAPGWKGQRGDMGPLGPAGMKGLPG---VPGWPGA 929
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSA 197
P LPG +PGP+ LPG LPGP LPG P PG
Sbjct: 930 DGTPGLPG------VPGPTGDDGLPG------LPGPKGPQGLPGFLGFPGERGKPGQDGH 977
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
P G PG L G A PG D+ PGPS PG
Sbjct: 978 PGRKGEHGEKGWPGFLGDRGLKGVKGARGPPGYEGETDIISKKGETGEPGPSGDGGFPGE 1037
Query: 258 SSAPDLPGPSSAPDLPG 274
+ PG PG
Sbjct: 1038 NGDKGHPGMQGRRGEPG 1054
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 81/251 (32%), Gaps = 33/251 (13%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------------P 68
P + LPG + L G + P GP+ P PG G
Sbjct: 819 PGKSGLPGAPGSKGLRGDAGRPGTAGPAGMPGFPGLQGPKGREGNAGFPGIPGPPGHSCE 878
Query: 69 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 128
AP +PG P PG AP G GP+ LPG P PG P L
Sbjct: 879 RGAPGIPGQPGLPGAPGSPGAPGWKGQRGDMGPLGPAGMKGLPG---VPGWPGADGTPGL 935
Query: 129 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGP 185
PG +PGP+ LPG LPGP LPG P PG P G
Sbjct: 936 PG------VPGPTGDDGLPG------LPGPKGPQGLPGFLGFPGERGKPGQDGHPGRKGE 983
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
PG L G A PG D+ PGPS PG +
Sbjct: 984 HGEKGWPGFLGDRGLKGVKGARGPPGYEGETDIISKKGETGEPGPSGDGGFPGENGDKGH 1043
Query: 246 PGPSSAPDLPG 256
PG PG
Sbjct: 1044 PGMQGRRGEPG 1054
>gi|351711761|gb|EHB14680.1| Collagen alpha-1(III) chain [Heterocephalus glaber]
Length = 1292
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 102/288 (35%), Gaps = 39/288 (13%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E PG + LPGP P + GP+ P PG G + G + AP L G
Sbjct: 206 ESGRPGRTGERGLPGP---PGIKGPAGMPGFPGVKGHRGFDGRNGE---KGETGAPGLKG 259
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS------------- 132
+ LPG + AP GP A PG P LPG + G
Sbjct: 260 ENG---LPGENGAPGPMGPRGA---PGERGRPGLPGAAGTRGNDGARGSDGQPGPPGPPG 313
Query: 133 --------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
A GP+ +P G A PGP GP P G G
Sbjct: 314 TAGFPGSPGAKGEVGPAGSPGSSGAPGARGEPGPQGHAGAQGPPGPPGNNGSPGGKGEMG 373
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
P+ P PG A GP PG +P PG + A PG A G + +P
Sbjct: 374 PAGIPGAPGLMGARGPAGPPGTNGAPGQRGSPGEPGKNGAKGEPG---ARGERGEAGSPG 430
Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG + D G +P PG + P G AP GP+ P L G
Sbjct: 431 IPG-TKGED--GKDGSPGEPGANGVPGAAGERGAPGFRGPAGPPGLAG 475
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 101/288 (35%), Gaps = 43/288 (14%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
P ER LPGP P + GP+ P PG G + G + AP L G
Sbjct: 210 PGRTGER----GLPGP---PGIKGPAGMPGFPGVKGHRGFDGRNGE---KGETGAPGLKG 259
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS------------- 123
+ LPG + AP GP A PG P LPG + G
Sbjct: 260 ENG---LPGENGAPGPMGPRGA---PGERGRPGLPGAAGTRGNDGARGSDGQPGPPGPPG 313
Query: 124 --------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
A GP+ +P G A PGP GP P G G
Sbjct: 314 TAGFPGSPGAKGEVGPAGSPGSSGAPGARGEPGPQGHAGAQGPPGPPGNNGSPGGKGEMG 373
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 235
P+ P PG A GP PG +P PG + A PG A G + +P
Sbjct: 374 PAGIPGAPGLMGARGPAGPPGTNGAPGQRGSPGEPGKNGAKGEPG---ARGERGEAGSPG 430
Query: 236 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
+PG + D G +P PG + P G AP GP+ P L G
Sbjct: 431 IPG-TKGED--GKDGSPGEPGANGVPGAAGERGAPGFRGPAGPPGLAG 475
>gi|345325148|ref|XP_001514905.2| PREDICTED: collagen alpha-2(IV) chain-like [Ornithorhynchus anatinus]
Length = 1686
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 91/270 (33%), Gaps = 25/270 (9%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
G AP L G S G G + G P + G S +P + G
Sbjct: 1078 GVKGAPGLAGVSGVKGYVGQKGHEGDSGLQGISGMKGTQGPPGIRGQSGSPGMAGSPGHH 1137
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPG 148
PG + G + P LPG S L G S LPG P PG P G
Sbjct: 1138 GDPGRNGFQGEKGDTGRPGLPGFSGVSGLRGISGLDGLPGTKGFPGSPGGDDFGDPGFLG 1197
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
PS PG + PGPS A G + GP + LPG +PGP S +
Sbjct: 1198 PSGDKGEPGDHNPK--PGPSGAVGPKGERGLTGIRGPMGSRGLPG------IPGPFSVTN 1249
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP------GPSSAPD 262
+ G PG P + G P GP P PGP P GP
Sbjct: 1250 ISG------FPGDRGDPGIFGTKGYPGQRGPPGVPASPGPKGEDGNPGLFGESGPKGWGG 1303
Query: 263 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
PGP P + G P GP L G
Sbjct: 1304 DPGPQGKPGVYG---IPGTKGPKGEQGLMG 1330
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 81/236 (34%), Gaps = 11/236 (4%)
Query: 92 LPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
L G P +PG S P LPG PS G + PG PG + P + G
Sbjct: 981 LKGGQGMPGVPGASGVPGLPGQPSQVKGDKGETGVRGHPGEQG---YPGAAGIPGIRGFP 1037
Query: 151 SAPDLPGPSSAPDLPG----PSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGP 203
P + G + G S DL +LPG AP L G S G
Sbjct: 1038 GFPGIRGDKGNIGIKGFEGESGSVGDLGDKGDTINLPGSRGVKGAPGLAGVSGVKGYVGQ 1097
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
G + G P + G S +P + G PG + G + P L
Sbjct: 1098 KGHEGDSGLQGISGMKGTQGPPGIRGQSGSPGMAGSPGHHGDPGRNGFQGEKGDTGRPGL 1157
Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPA 319
PG S L G S LPG P PG +LG +G + P PKP
Sbjct: 1158 PGFSGVSGLRGISGLDGLPGTKGFPGSPGGDDFGDPGFLGPSGDKGEPGDHNPKPG 1213
>gi|170029346|ref|XP_001842554.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167881657|gb|EDS45040.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 1452
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 51/155 (32%), Gaps = 6/155 (3%)
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
G P LPG G PGP P GP G L GP
Sbjct: 527 GSKGEPGLPGDRGYKGESGIKGESGTPGPRGLPGAAGPEGKRGKRGMKGPTGLAGPQGER 586
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
LPG P LPGP A + G PGP G + P PG L GP+
Sbjct: 587 GLPG---IPGLPGPDGAQGIKGQRGDRGAPGPQGTK---GSTGDPGSPGQPGIQGLRGPA 640
Query: 268 SAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL 302
G + AP GP A P + V YL
Sbjct: 641 GRSGAQGKAGAPGERGPPGADGKENPVTKVSKDYL 675
>gi|119569212|gb|EAW48827.1| collagen, type IX, alpha 1, isoform CRA_f [Homo sapiens]
Length = 921
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 78/233 (33%), Gaps = 15/233 (6%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG S P LPG G P G G GP A L G +
Sbjct: 417 PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGI 476
Query: 90 PDLPGPSSAPDL---PGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G A L PGP P PG P GP G P LPGP
Sbjct: 477 VGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGPKGD 536
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
LPG +PG +PG P PGP L G P +PG G
Sbjct: 537 TGLPGVDGRDGIPG------MPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGS 590
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ AP PG PG P GP LPG S +L GP +P LPG
Sbjct: 591 TGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLPG--SRGEL-GPVGSPGLPG 640
>gi|73486666|ref|NP_001842.3| collagen alpha-1(IX) chain isoform 1 precursor [Homo sapiens]
gi|296439373|sp|P20849.3|CO9A1_HUMAN RecName: Full=Collagen alpha-1(IX) chain; Flags: Precursor
gi|119569208|gb|EAW48823.1| collagen, type IX, alpha 1, isoform CRA_b [Homo sapiens]
Length = 921
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 78/233 (33%), Gaps = 15/233 (6%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG S P LPG G P G G GP A L G +
Sbjct: 417 PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGI 476
Query: 90 PDLPGPSSAPDL---PGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G A L PGP P PG P GP G P LPGP
Sbjct: 477 VGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGPKGD 536
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
LPG +PG +PG P PGP L G P +PG G
Sbjct: 537 TGLPGVDGRDGIPG------MPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGS 590
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ AP PG PG P GP LPG S +L GP +P LPG
Sbjct: 591 TGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLPG--SRGEL-GPVGSPGLPG 640
>gi|30084|emb|CAA38276.1| unnamed protein product [Homo sapiens]
Length = 931
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 78/233 (33%), Gaps = 15/233 (6%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG S P LPG G P G G GP A L G +
Sbjct: 417 PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGL 476
Query: 90 PDLPGPSSAPDL---PGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G A L PGP P PG P GP G P LPGP
Sbjct: 477 VGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGPKGD 536
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
LPG +PG +PG P PGP L G P +PG G
Sbjct: 537 TGLPGVDGRDGIPG------MPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGS 590
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ AP PG PG P GP LPG S +L GP +P LPG
Sbjct: 591 TGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLPG--SRGEL-GPVGSPGLPG 640
>gi|426338026|ref|XP_004032993.1| PREDICTED: collagen alpha-1(III) chain [Gorilla gorilla gorilla]
Length = 1466
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 107/291 (36%), Gaps = 30/291 (10%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E LPGP P + GP+ P PG G + G + AP L G +
Sbjct: 238 RPGERGLPGP---PGIKGPAGIPGFPGMKGHRGFDGRNGEK---GETGAPGLKGENG--- 288
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---------- 132
LPG + AP GP AP G P LPG + A G + PGP
Sbjct: 289 LPGENGAPGPMGPRGAP---GERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPG 345
Query: 133 --SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
A GP+ +P G PGP GP P + G GP+ P
Sbjct: 346 SPGAKGEVGPAGSPGSNGVPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPG 405
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPG 247
PG A PGP+ A PG PG + A PGP +PG A G
Sbjct: 406 APGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDG 465
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSS 295
+P PG + P G AP GP+ P GP+ PGP+
Sbjct: 466 KDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAG 516
>gi|126308289|ref|XP_001367735.1| PREDICTED: collagen alpha-1(I) chain-like isoform 1 [Monodelphis
domestica]
Length = 1455
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 86/225 (38%), Gaps = 12/225 (5%)
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAP 135
A PG A PG + AP PG GPS AP G S P PG A
Sbjct: 381 GADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGAPGPKGNSGEPGAPGNKGDPGAK 440
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
PGP PGP+ G + PGPS LPGP+ PG P G +
Sbjct: 441 GEPGPVGVQGPPGPAGE---EGKRGSRGEPGPSG---LPGPAGERGGPGSRGFPGADGVA 494
Query: 196 SAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
PG AP GP +P PG + P G + +P PGP PGP+
Sbjct: 495 GPKGAPGERGAPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQD 554
Query: 253 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
PGP P G + PGP A PG + +PGP V
Sbjct: 555 GRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAV 599
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 85/221 (38%), Gaps = 12/221 (5%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAP 99
A PG A PG + AP PG GPS AP G S P PG A
Sbjct: 381 GADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGAPGPKGNSGEPGAPGNKGDPGAK 440
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 159
PGP PGP+ G + PGPS LPGP+ PG P G +
Sbjct: 441 GEPGPVGVQGPPGPAGE---EGKRGSRGEPGPSG---LPGPAGERGGPGSRGFPGADGVA 494
Query: 160 SAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
PG AP GP +P PG + P G + +P PGP PGP+
Sbjct: 495 GPKGAPGERGAPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQD 554
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
PGP P G + PGP A PG + +PGP
Sbjct: 555 GRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGP 595
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 81/207 (39%), Gaps = 12/207 (5%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGP 86
PG + AP PG GPS AP G S P PG A PGP PGP
Sbjct: 395 PGIAGAPGFPGARGPSGPQGPSGAPGPKGNSGEPGAPGNKGDPGAKGEPGPVGVQGPPGP 454
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
+ G + PGPS LPGP+ PG P G + PG AP
Sbjct: 455 AGE---EGKRGSRGEPGPSG---LPGPAGERGGPGSRGFPGADGVAGPKGAPGERGAPGP 508
Query: 147 PGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
GP +P PG + P G + +P PGP PGP+ PGP P G
Sbjct: 509 AGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQ 568
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGP 230
+ PGP A PG + +PGP
Sbjct: 569 AGVMGFPGPKGAAGEPGKAGERGVPGP 595
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 87/227 (38%), Gaps = 15/227 (6%)
Query: 52 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---AP 108
A PG A PG + AP PG GPS AP G S P PG A
Sbjct: 381 GADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGAPGPKGNSGEPGAPGNKGDPGAK 440
Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 168
PGP PGP+ G + PGPS LPGP+ PG P G +
Sbjct: 441 GEPGPVGVQGPPGPAGEE---GKRGSRGEPGPSG---LPGPAGERGGPGSRGFPGADGVA 494
Query: 169 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
PG AP GP+ PG + PG + P G + +P PGP P
Sbjct: 495 GPKGAPGERGAP---GPAGPKGSPGEAG---RPGEAGLPGAKGLTGSPGSPGPDGKTGPP 548
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 275
GP+ PGP P G + PGP A PG + +PGP
Sbjct: 549 GPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGP 595
>gi|270007027|gb|EFA03475.1| hypothetical protein TcasGA2_TC013472 [Tribolium castaneum]
Length = 1808
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 54/152 (35%), Gaps = 16/152 (10%)
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS------SAPDLPGPSSA 206
P L G S GP+ P LPGPS P G P LPG S G
Sbjct: 1072 PGLVGYSGEKGDTGPAGFPGLPGPSGMPGFKGEPGLPGLPGEKGDQGDVSEKGQKGEPGI 1131
Query: 207 PDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
P L GP S PGP G S P L G P PG P +PG P
Sbjct: 1132 PGLRGPPGLSGRQGFPGPKGDKGTIG-QSIPGLKGEPGVPGNPGIDGRPGIPGLKGEPGF 1190
Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
PG LPG PG AP + G S
Sbjct: 1191 PG------LPGMKGDRGFPGERGAPGIDGISG 1216
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 58/161 (36%), Gaps = 16/161 (9%)
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
P L G S GP+ P LPGPS +PG P LPG G S G
Sbjct: 1072 PGLVGYSGEKGDTGPAGFPGLPGPSG---MPGFKGEPGLPGLPGEKGDQGDVSEKGQKGE 1128
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
P L GP PG S PGP G S P L G P PG P +
Sbjct: 1129 PGIPGLRGP------PGLSGRQGFPGPKGDKGTIG-QSIPGLKGEPGVPGNPGIDGRPGI 1181
Query: 246 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
PG P PG LPG PG AP + G S
Sbjct: 1182 PGLKGEPGFPG------LPGMKGDRGFPGERGAPGIDGISG 1216
>gi|395532736|ref|XP_003768424.1| PREDICTED: collagen alpha-1(I) chain isoform 2 [Sarcophilus
harrisii]
Length = 1447
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 81/215 (37%), Gaps = 9/215 (4%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAP 99
A PG A PG + AP PG GPS AP G S P PG A
Sbjct: 373 GADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGAPGPKGNSGEPGTPGNKGDPGAK 432
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 156
PGP PGP+ G P LPGP+ PG P G + P
Sbjct: 433 GEPGPVGVQGPPGPAGEEGKRGSRGEPGPAGLPGPAGERGGPGSRGFPGADGVAGPKGAP 492
Query: 157 GPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 213
G AP GP +P PG + P G + +P PGP PGP+ PGP
Sbjct: 493 GERGAPGPAGPKGSPGESGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPP 552
Query: 214 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
P G + PGP A PG + +PGP
Sbjct: 553 GPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGP 587
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 83/221 (37%), Gaps = 12/221 (5%)
Query: 61 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---AP 117
A PG A PG + AP PG GPS AP G S P PG A
Sbjct: 373 GADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGAPGPKGNSGEPGTPGNKGDPGAK 432
Query: 118 DLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
PGP PGP+ G P LPGP+ PG P G + P
Sbjct: 433 GEPGPVGVQGPPGPAGEEGKRGSRGEPGPAGLPGPAGERGGPGSRGFPGADGVAGPKGAP 492
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G AP GP+ PG S PG + P G + +P PGP PGP+
Sbjct: 493 GERGAP---GPAGPKGSPGESG---RPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQD 546
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 275
PGP P G + PGP A PG + +PGP
Sbjct: 547 GRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGP 587
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 75/215 (34%), Gaps = 27/215 (12%)
Query: 34 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---AP 90
A PG A PG + AP PG GPS AP G S P PG A
Sbjct: 373 GADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGAPGPKGNSGEPGTPGNKGDPGAK 432
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
PGP PGP+ G P LPGP+ PG P G + P
Sbjct: 433 GEPGPVGVQGPPGPAGEEGKRGSRGEPGPAGLPGPAGERGGPGSRGFPGADGVAGPKGAP 492
Query: 148 GPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP------ 198
G AP GP +P PG + P G + +P PGP PGP+
Sbjct: 493 GERGAPGPAGPKGSPGESGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPP 552
Query: 199 ------------DLPGPSSAPDLPGPSSAPDLPGP 221
PGP A PG + +PGP
Sbjct: 553 GPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGP 587
>gi|410350899|gb|JAA42053.1| collagen, type III, alpha 1 [Pan troglodytes]
Length = 1466
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 107/291 (36%), Gaps = 30/291 (10%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E LPGP P + GP+ P PG G + G + AP L G +
Sbjct: 238 RPGERGLPGP---PGIKGPAGIPGFPGMKGHRGFDGRNGEK---GETGAPGLKGENG--- 288
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---------- 132
LPG + AP GP AP G P LPG + A G + PGP
Sbjct: 289 LPGENGAPGPMGPRGAP---GERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPG 345
Query: 133 --SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
A GP+ +P G PGP GP P + G GP+ P
Sbjct: 346 SPGAKGEVGPAGSPGSNGDPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPG 405
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPG 247
PG A PGP+ A PG PG + A PGP +PG A G
Sbjct: 406 APGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDG 465
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSS 295
+P PG + P G AP GP+ P GP+ PGP+
Sbjct: 466 KDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAG 516
>gi|3510535|gb|AAC33527.1| collagen type IX alpha I chain, long form [Homo sapiens]
Length = 921
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 78/233 (33%), Gaps = 15/233 (6%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG S P LPG G P G G GP A L G +
Sbjct: 417 PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGI 476
Query: 90 PDLPGPSSAPDL---PGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G A L PGP P PG P GP G P LPGP
Sbjct: 477 VGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGPKGD 536
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
LPG +PG +PG P PGP L G P +PG G
Sbjct: 537 TGLPGVDGRDGIPG------MPGTKGEPGKPGPPGDAGLHGLPGVPGIPGAKGVAGEKGS 590
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ AP PG PG P GP LPG S +L GP +P LPG
Sbjct: 591 TGAPGKPGQMGNSGKPGQQGPPGEVGPRGPRGLPG--SRGEL-GPVGSPGLPG 640
>gi|56790315|ref|NP_954684.1| collagen alpha-1(I) chain precursor [Danio rerio]
gi|38570069|gb|AAR24536.1| chihuahua [Danio rerio]
Length = 1447
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 89/248 (35%), Gaps = 24/248 (9%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
LPGP A PG S PG + AP G PG AP GP A PG +
Sbjct: 629 LPGPQGATGEPGKSGEQGAPGEAGAPGPSGSRGDRGFPGERGAPGPAGPVGARGSPGSAG 688
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------------PSS 169
G S A PG P L G +PG A LPG +
Sbjct: 689 NDGAKGESGAAGAPGAQGPPGLQG------MPGERGAAGLPGLKGDRGDQGAKGADGAAG 742
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
+ G + PGP+ AP G S A L GP+ A PG PGP+ G
Sbjct: 743 KDGIRGMTGPIGPPGPAGAPGDKGESGAQGLVGPTGARGPPGERGETGAPGPAG---FAG 799
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
P A LPG P G PGP+ A PGP GP A GP A
Sbjct: 800 PPGADGLPGAKGEPGDNGAKGDAGAPGPAGATGAPGPQGPVGATGPKGARGAAGPPGATG 859
Query: 290 LPGPSSTV 297
PG + V
Sbjct: 860 FPGAAGRV 867
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 87/243 (35%), Gaps = 24/243 (9%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPGP A PG S PG + AP G PG AP GP A PG +
Sbjct: 629 LPGPQGATGEPGKSGEQGAPGEAGAPGPSGSRGDRGFPGERGAPGPAGPVGARGSPGSAG 688
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------------PSS 133
G S A PG P L G +PG A LPG +
Sbjct: 689 NDGAKGESGAAGAPGAQGPPGLQG------MPGERGAAGLPGLKGDRGDQGAKGADGAAG 742
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
+ G + PGP+ AP G S A L GP+ A PG PGP+ G
Sbjct: 743 KDGIRGMTGPIGPPGPAGAPGDKGESGAQGLVGPTGARGPPGERGETGAPGPAG---FAG 799
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
P A LPG P G PGP+ A PGP GP A GP A
Sbjct: 800 PPGADGLPGAKGEPGDNGAKGDAGAPGPAGATGAPGPQGPVGATGPKGARGAAGPPGATG 859
Query: 254 LPG 256
PG
Sbjct: 860 FPG 862
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 87/243 (35%), Gaps = 24/243 (9%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
LPGP A PG S PG + AP G PG AP GP A PG +
Sbjct: 629 LPGPQGATGEPGKSGEQGAPGEAGAPGPSGSRGDRGFPGERGAPGPAGPVGARGSPGSAG 688
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------------PSS 160
G S A PG P L G +PG A LPG +
Sbjct: 689 NDGAKGESGAAGAPGAQGPPGLQG------MPGERGAAGLPGLKGDRGDQGAKGADGAAG 742
Query: 161 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
+ G + PGP+ AP G S A L GP+ A PG PGP+ G
Sbjct: 743 KDGIRGMTGPIGPPGPAGAPGDKGESGAQGLVGPTGARGPPGERGETGAPGPAG---FAG 799
Query: 221 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 280
P A LPG P G PGP+ A PGP GP A GP A
Sbjct: 800 PPGADGLPGAKGEPGDNGAKGDAGAPGPAGATGAPGPQGPVGATGPKGARGAAGPPGATG 859
Query: 281 LPG 283
PG
Sbjct: 860 FPG 862
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 85/249 (34%), Gaps = 30/249 (12%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E GP LPGP A PG S PG + AP G PG AP G
Sbjct: 617 EQGAAGPPGFQGLPGPQGATGEPGKSGEQGAPGEAGAPGPSGSRGDRGFPGERGAPGPAG 676
Query: 86 PSSAPDLPGPSSAPDLPGPSSA------------PDLPGPSSAPDLPG------------ 121
P A PG + G S A +PG A LPG
Sbjct: 677 PVGARGSPGSAGNDGAKGESGAAGAPGAQGPPGLQGMPGERGAAGLPGLKGDRGDQGAKG 736
Query: 122 ---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
+ + G + PGP+ AP G S A L GP+ A PG PGP+
Sbjct: 737 ADGAAGKDGIRGMTGPIGPPGPAGAPGDKGESGAQGLVGPTGARGPPGERGETGAPGPAG 796
Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
GP A LPG P G PGP+ A PGP GP A G
Sbjct: 797 ---FAGPPGADGLPGAKGEPGDNGAKGDAGAPGPAGATGAPGPQGPVGATGPKGARGAAG 853
Query: 239 PSSAPDLPG 247
P A PG
Sbjct: 854 PPGATGFPG 862
>gi|85662707|ref|NP_571367.1| collagen alpha-1(II) chain precursor [Danio rerio]
gi|84626356|gb|ABC59719.1| collagen type II, alpha 1 [Danio rerio]
Length = 1491
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 74/221 (33%), Gaps = 9/221 (4%)
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
PG P G + A PG P L GP PG P LPG PG + A
Sbjct: 516 PGNRGFPGQDGLAGAKGAPGDRGVPGLSGPKGGTGDPGRPGEPGLPGARGLTGRPGDAGA 575
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
G + AP G P G P + G PGP A PG L G
Sbjct: 576 QGKVGATGAPGEDGRPGPPGPLGARGQPGVMG------FPGPKGANGEPGKPGEKGLVGR 629
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
+ LPG GP G PGPS LPGP+ AP PG +
Sbjct: 630 TGLRGLPGKDGETGPSGPPGPVGAVGERGEQGQPGPSGFQGLPGPTGAPGEPGKPGDQGV 689
Query: 255 PGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPG 292
PG A GP PG L GP P PG
Sbjct: 690 PGEGGAAGPTGPRGERGFPGERGGAGPQGLQGPRGLPGTPG 730
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 72/218 (33%), Gaps = 12/218 (5%)
Query: 66 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
PG P G + A PG P L GP PG P LPG PG + A
Sbjct: 516 PGNRGFPGQDGLAGAKGAPGDRGVPGLSGPKGGTGDPGRPGEPGLPGARGLTGRPGDAGA 575
Query: 126 PDLPGPSSAPDLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
G + AP G A PG PGP A PG L G +
Sbjct: 576 QGKVGATGAPGEDGRPGPPGPLGARGQPG---VMGFPGPKGANGEPGKPGEKGLVGRTGL 632
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
LPG GP G PGPS LPGP+ AP PG +PG
Sbjct: 633 RGLPGKDGETGPSGPPGPVGAVGERGEQGQPGPSGFQGLPGPTGAPGEPGKPGDQGVPGE 692
Query: 240 SSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPG 274
A GP PG L GP P PG
Sbjct: 693 GGAAGPTGPRGERGFPGERGGAGPQGLQGPRGLPGTPG 730
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 67/212 (31%), Gaps = 21/212 (9%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P G + A PG P L GP PG P LPG PG + A G
Sbjct: 522 PGQDGLAGAKGAPGDRGVPGLSGPKGGTGDPGRPGEPGLPGARGLTGRPGDAGAQGKVGA 581
Query: 87 SSA---------------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
+ A PG PGP A PG L G + LPG
Sbjct: 582 TGAPGEDGRPGPPGPLGARGQPG---VMGFPGPKGANGEPGKPGEKGLVGRTGLRGLPGK 638
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
GP G PGPS LPGP+ AP PG +PG A
Sbjct: 639 DGETGPSGPPGPVGAVGERGEQGQPGPSGFQGLPGPTGAPGEPGKPGDQGVPGEGGAAGP 698
Query: 192 PGPSSAPDLPGPSSA---PDLPGPSSAPDLPG 220
GP PG L GP P PG
Sbjct: 699 TGPRGERGFPGERGGAGPQGLQGPRGLPGTPG 730
>gi|395532734|ref|XP_003768423.1| PREDICTED: collagen alpha-1(I) chain isoform 1 [Sarcophilus
harrisii]
Length = 1454
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 81/215 (37%), Gaps = 9/215 (4%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAP 99
A PG A PG + AP PG GPS AP G S P PG A
Sbjct: 380 GADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGAPGPKGNSGEPGTPGNKGDPGAK 439
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 156
PGP PGP+ G P LPGP+ PG P G + P
Sbjct: 440 GEPGPVGVQGPPGPAGEEGKRGSRGEPGPAGLPGPAGERGGPGSRGFPGADGVAGPKGAP 499
Query: 157 GPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 213
G AP GP +P PG + P G + +P PGP PGP+ PGP
Sbjct: 500 GERGAPGPAGPKGSPGESGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPP 559
Query: 214 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
P G + PGP A PG + +PGP
Sbjct: 560 GPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGP 594
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 83/221 (37%), Gaps = 12/221 (5%)
Query: 61 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---AP 117
A PG A PG + AP PG GPS AP G S P PG A
Sbjct: 380 GADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGAPGPKGNSGEPGTPGNKGDPGAK 439
Query: 118 DLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
PGP PGP+ G P LPGP+ PG P G + P
Sbjct: 440 GEPGPVGVQGPPGPAGEEGKRGSRGEPGPAGLPGPAGERGGPGSRGFPGADGVAGPKGAP 499
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G AP GP+ PG S PG + P G + +P PGP PGP+
Sbjct: 500 GERGAP---GPAGPKGSPGESG---RPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQD 553
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 275
PGP P G + PGP A PG + +PGP
Sbjct: 554 GRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGP 594
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 77/201 (38%), Gaps = 9/201 (4%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGP 86
PG + AP PG GPS AP G S P PG A PGP PGP
Sbjct: 394 PGIAGAPGFPGARGPSGPQGPSGAPGPKGNSGEPGTPGNKGDPGAKGEPGPVGVQGPPGP 453
Query: 87 SSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
+ G P LPGP+ PG P G + PG AP GP +
Sbjct: 454 AGEEGKRGSRGEPGPAGLPGPAGERGGPGSRGFPGADGVAGPKGAPGERGAPGPAGPKGS 513
Query: 144 P---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
P PG + P G + +P PGP PGP+ PGP P G +
Sbjct: 514 PGESGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGF 573
Query: 201 PGPSSAPDLPGPSSAPDLPGP 221
PGP A PG + +PGP
Sbjct: 574 PGPKGAAGEPGKAGERGVPGP 594
>gi|380027350|ref|XP_003697390.1| PREDICTED: collagen alpha-1(XI) chain-like [Apis florea]
Length = 1782
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 72/227 (31%), Gaps = 21/227 (9%)
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
L GP P +PG S A PG P +PG L GP PG G
Sbjct: 677 LVGPQGKPGIPGLSGADGSPGHPGNPGIPGTKGEQGLQGPQGPIGFPGVRGIKGDEGKRG 736
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+P G + G D+ G P L GP P L G GP L G
Sbjct: 737 SPGERGEKGEKGVEGDKG--DV-GAKGEPGLSGPQGIPGLEGLEGPKGFEGPRGESGLIG 793
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP----- 257
+P G + P G P G P GP+ G + A G
Sbjct: 794 ---SPGEKGKTGPPGFVGYPGNPGEKGDKGQPGREGPNGDKGERGTNGAQGERGEPGPRG 850
Query: 258 -------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
A LPGP PGP PGP P + GP V
Sbjct: 851 FRGARGRRGAEGLPGPKGDTGQPGPPGLQGEPGP---PGIEGPRGFV 894
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 73/231 (31%), Gaps = 21/231 (9%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
L GP P +PG S A PG P +PG L GP PG G
Sbjct: 677 LVGPQGKPGIPGLSGADGSPGHPGNPGIPGTKGEQGLQGPQGPIGFPGVRGIKGDEGKRG 736
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
+P G + G D+ G P L GP P L G GP L G
Sbjct: 737 SPGERGEKGEKGVEGDKG--DV-GAKGEPGLSGPQGIPGLEGLEGPKGFEGPRGESGLIG 793
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP----- 230
+P G + P G P G P GP+ G + A G
Sbjct: 794 ---SPGEKGKTGPPGFVGYPGNPGEKGDKGQPGREGPNGDKGERGTNGAQGERGEPGPRG 850
Query: 231 -------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
A LPGP PGP PGP P + GP PG
Sbjct: 851 FRGARGRRGAEGLPGPKGDTGQPGPPGLQGEPGP---PGIEGPRGFVGAPG 898
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 73/231 (31%), Gaps = 21/231 (9%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
L GP P +PG S A PG P +PG L GP PG G
Sbjct: 677 LVGPQGKPGIPGLSGADGSPGHPGNPGIPGTKGEQGLQGPQGPIGFPGVRGIKGDEGKRG 736
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
+P G + G D+ G P L GP P L G GP L G
Sbjct: 737 SPGERGEKGEKGVEGDKG--DV-GAKGEPGLSGPQGIPGLEGLEGPKGFEGPRGESGLIG 793
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP----- 248
+P G + P G P G P GP+ G + A G
Sbjct: 794 ---SPGEKGKTGPPGFVGYPGNPGEKGDKGQPGREGPNGDKGERGTNGAQGERGEPGPRG 850
Query: 249 -------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
A LPGP PGP PGP P + GP PG
Sbjct: 851 FRGARGRRGAEGLPGPKGDTGQPGPPGLQGEPGP---PGIEGPRGFVGAPG 898
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 89/268 (33%), Gaps = 30/268 (11%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E L G P + G +P LPGPS + G PGP + GP L G
Sbjct: 995 ERGLSGLPGMPGVKGEIGSPGLPGPSGDKGVQGEPGKDGEPGPQGSQGSKGPPGPVGLKG 1054
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P GP LPG P PGP P G D+ GP G
Sbjct: 1055 DRGEPGPIGPIGRDGLPGQRGLPGSPGPVGVPGEDGDKG--DI-GPPGEKGFKGSQGEMG 1111
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPD 199
PGP + G A LPG P G A GP A G +
Sbjct: 1112 PPGPIGIQGIRGEPGAIGLPGEKGPPGEIGRQGAKGEDGPVGASGPPGPVGPQGLPGSQG 1171
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
L G L GP GP+ +P GP GP + L G LPGP
Sbjct: 1172 LKGEVGDAGLVGPV------GPAGSPGAQGPR------GPKGSEGLQG------LPGPEG 1213
Query: 260 APDLPGPSSAPDLP---GPSSAPDLPGP 284
G + AP LP GP P GP
Sbjct: 1214 LQGQKGEAGAPGLPGSIGPEGKPGERGP 1241
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 90/296 (30%), Gaps = 54/296 (18%)
Query: 33 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----------- 81
S AP + G P LPG LPG G + LPG
Sbjct: 555 SGAPGMKGEQGVPGLPG------LPGDKGERGAVGATGEQGLPGHEGMQGDDGPPGLPGL 608
Query: 82 -------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---------------SAPDL 119
GP P LPG P +PG P G + A
Sbjct: 609 PGEMGPRGFIGPRGFPGLPG---NPGIPGSEGPPGAKGNTGPPGPPGSPGSPGPIGAVGP 665
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
PGP L GP+ L GP P +PG S A PG P +PG L GP
Sbjct: 666 PGPQG---LLGPTG---LVGPQGKPGIPGLSGADGSPGHPGNPGIPGTKGEQGLQGPQGP 719
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
PG G +P G + G D+ G P L GP P L G
Sbjct: 720 IGFPGVRGIKGDEGKRGSPGERGEKGEKGVEGDKG--DV-GAKGEPGLSGPQGIPGLEGL 776
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
GP L G +P G + P G P G P GP+
Sbjct: 777 EGPKGFEGPRGESGLIG---SPGEKGKTGPPGFVGYPGNPGEKGDKGQPGREGPNG 829
Score = 38.5 bits (88), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 71/225 (31%), Gaps = 21/225 (9%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P +PG S A PG P +PG L GP PG G +P G
Sbjct: 683 KPGIPGLSGADGSPGHPGNPGIPGTKGEQGLQGPQGPIGFPGVRGIKGDEGKRGSPGERG 742
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
+ G D+ G P L GP P L G GP L G +P
Sbjct: 743 EKGEKGVEGDKG--DV-GAKGEPGLSGPQGIPGLEGLEGPKGFEGPRGESGLIG---SPG 796
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP----------- 194
G + P G P G P GP+ G + A G
Sbjct: 797 EKGKTGPPGFVGYPGNPGEKGDKGQPGREGPNGDKGERGTNGAQGERGEPGPRGFRGARG 856
Query: 195 -SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
A LPGP PGP PGP P + GP PG
Sbjct: 857 RRGAEGLPGPKGDTGQPGPPGLQGEPGP---PGIEGPRGFVGAPG 898
Score = 38.1 bits (87), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 91/287 (31%), Gaps = 30/287 (10%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P E PGP +PG + G G S AP + G P LPG L
Sbjct: 519 PGEIGEPGPRGERGIPGNTGREGRRGRPGRDGERGLSGAPGMKGEQGVPGLPG------L 572
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
PG G + LPG GP P LPG GP P LPG
Sbjct: 573 PGDKGERGAVGATGEQGLPGHEGMQGDDGPPGLPGLPGEMGPRGFIGPRGFPGLPG---N 629
Query: 144 PDLPGPSSAPDLPGPS---------------SAPDLPGPSSA---PDLPGPSSAPDLPGP 185
P +PG P G + A PGP L GP P +PG
Sbjct: 630 PGIPGSEGPPGAKGNTGPPGPPGSPGSPGPIGAVGPPGPQGLLGPTGLVGPQGKPGIPGL 689
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
S A PG P +PG L GP PG G +P G +
Sbjct: 690 SGADGSPGHPGNPGIPGTKGEQGLQGPQGPIGFPGVRGIKGDEGKRGSPGERGEKGEKGV 749
Query: 246 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G D+ G P L GP P L G GP L G
Sbjct: 750 EGDKG--DV-GAKGEPGLSGPQGIPGLEGLEGPKGFEGPRGESGLIG 793
>gi|431905142|gb|ELK10193.1| Collagen alpha-1(IV) chain [Pteropus alecto]
Length = 1464
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 49/124 (39%), Gaps = 8/124 (6%)
Query: 39 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 98
PG + P L G PGP PG P +PG +P LPG PG S
Sbjct: 832 PGLTGPPGLKGNIGDMGFPGPQGVKGSPG---TPGVPGQPGSPGLPGQKGEKGDPGVSGI 888
Query: 99 --PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 156
P LPGP P LPG P + G LPG P G S P PG P LP
Sbjct: 889 GLPGLPGPKGEPGLPGYPGNPGMKGSVGDIGLPGLPGTPGAKGQSGLPGFPG---IPGLP 945
Query: 157 GPSS 160
GP
Sbjct: 946 GPKG 949
>gi|224048279|ref|XP_002190693.1| PREDICTED: collagen alpha-1(X) chain [Taeniopygia guttata]
Length = 677
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 97
LPGP D+ GP+ P PG LPG P PG L GP P LPG
Sbjct: 349 LPGPKG--DM-GPAGHPGFPGAKGERGLPGLEGKPGYPGEQG---LAGPKGHPGLPG--- 399
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
A GP+ P LPGP GP A +PG + P GPS P + GP P LPG
Sbjct: 400 AKGDAGPAGLPGLPGPM------GPQGAKGVPGTNGEPGPRGPSGIPGIRGPIGPPGLPG 453
Query: 158 PSSAPDLPGPSSAPDLPGPSS 178
A PG AP LPGP+
Sbjct: 454 APGAKGEPG---APGLPGPAG 471
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
LPGP D+ GP+ P PG LPG P PG L GP P LPG
Sbjct: 349 LPGPKG--DM-GPAGHPGFPGAKGERGLPGLEGKPGYPGEQG---LAGPKGHPGLPG--- 399
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
A GP+ P LPGP GP A +PG + P GPS P + GP P LPG
Sbjct: 400 AKGDAGPAGLPGLPGPM------GPQGAKGVPGTNGEPGPRGPSGIPGIRGPIGPPGLPG 453
Query: 194 PSSAPDLPGPSSAPDLPGPSS 214
A PG AP LPGP+
Sbjct: 454 APGAKGEPG---APGLPGPAG 471
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 47/109 (43%), Gaps = 15/109 (13%)
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
LPGP D+ GP+ P PG LPG P PG L GP P LPG
Sbjct: 349 LPGPKG--DM-GPAGHPGFPGAKGERGLPGLEGKPGYPGEQG---LAGPKGHPGLPG--- 399
Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
A GP+ P LPGP GP A +PG + P GPS P +
Sbjct: 400 AKGDAGPAGLPGLPGPM------GPQGAKGVPGTNGEPGPRGPSGIPGI 442
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 107/277 (38%), Gaps = 45/277 (16%)
Query: 33 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----------PSSAPDLPGPSSAP 81
S P PG PG A LPGP P PG P A +PG P
Sbjct: 217 SGLPGQPGLKGDRGFPGAPGAVGLPGPQGLPGEPGEVGIGKPGPMGPPGAAGIPGAKGHP 276
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDL------------PGPSSAPDLPGPSSAPDLP 129
G +P LPG P LPG GP+ P PGP P
Sbjct: 277 GPAGLPGSPGLPG-FGKPGLPGMKGHRGPEGPPGLPGPKGDQGPAGVPGEPGPMGPPGSM 335
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
GP LPG + LPGP D+ GP+ P PG LPG P PG
Sbjct: 336 GPHGLKGLPGENG---LPGPKG--DM-GPAGHPGFPGAKGERGLPGLEGKPGYPGEQG-- 387
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
L GP P LPG A GP+ P LPGP GP A +PG + P GPS
Sbjct: 388 -LAGPKGHPGLPG---AKGDAGPAGLPGLPGPM------GPQGAKGVPGTNGEPGPRGPS 437
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
P + GP P LPG A PG AP LPGP+
Sbjct: 438 GIPGIRGPIGPPGLPGAPGAKGEPG---APGLPGPAG 471
Score = 38.1 bits (87), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 103/263 (39%), Gaps = 45/263 (17%)
Query: 29 LPGPSSAPDLPGPSSAPDLPG-----------PSSAPDLPGPSSAPDLPGPSSAPDLPGP 77
PG A LPGP P PG P A +PG P G +P LPG
Sbjct: 231 FPGAPGAVGLPGPQGLPGEPGEVGIGKPGPMGPPGAAGIPGAKGHPGPAGLPGSPGLPG- 289
Query: 78 SSAPDLPGPSSAPDL------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
P LPG GP+ P PGP P GP LPG +
Sbjct: 290 FGKPGLPGMKGHRGPEGPPGLPGPKGDQGPAGVPGEPGPMGPPGSMGPHGLKGLPGENG- 348
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
LPGP D+ GP+ P PG LPG P PG L GP P LPG
Sbjct: 349 --LPGPKG--DM-GPAGHPGFPGAKGERGLPGLEGKPGYPGEQG---LAGPKGHPGLPG- 399
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
A GP+ P LPGP GP A +PG + P GPS P + GP P L
Sbjct: 400 --AKGDAGPAGLPGLPGPM------GPQGAKGVPGTNGEPGPRGPSGIPGIRGPIGPPGL 451
Query: 246 PGPSSAPDLPGPSSAPDLPGPSS 268
PG A PG AP LPGP+
Sbjct: 452 PGAPGAKGEPG---APGLPGPAG 471
>gi|190338776|gb|AAI63934.1| Col2a1a protein [Danio rerio]
Length = 1491
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 74/221 (33%), Gaps = 9/221 (4%)
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
PG P G + A PG P L GP PG P LPG PG + A
Sbjct: 516 PGNRGFPGQDGLAGAKGAPGDRGVPGLSGPKGGTGDPGRPGEPGLPGARGLTGRPGDAGA 575
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
G + AP G P G P + G PGP A PG L G
Sbjct: 576 QGKVGATGAPGEDGRPGPPGPLGARGQPGVMG------FPGPKGANGEPGKPGEKGLVGR 629
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
+ LPG GP G PGPS LPGP+ AP PG +
Sbjct: 630 TGLRGLPGKDGETGPSGPPGPVGAVGERGEQGQPGPSGFQGLPGPTGAPGEPGKPGDQGV 689
Query: 255 PGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPG 292
PG A GP PG L GP P PG
Sbjct: 690 PGEGGAAGPTGPRGERGFPGERGGAGPQGLQGPRGLPGTPG 730
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 72/218 (33%), Gaps = 12/218 (5%)
Query: 66 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
PG P G + A PG P L GP PG P LPG PG + A
Sbjct: 516 PGNRGFPGQDGLAGAKGAPGDRGVPGLSGPKGGTGDPGRPGEPGLPGARGLTGRPGDAGA 575
Query: 126 PDLPGPSSAPDLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
G + AP G A PG PGP A PG L G +
Sbjct: 576 QGKVGATGAPGEDGRPGPPGPLGARGQPG---VMGFPGPKGANGEPGKPGEKGLVGRTGL 632
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
LPG GP G PGPS LPGP+ AP PG +PG
Sbjct: 633 RGLPGKDGETGPSGPPGPVGAVGERGEQGQPGPSGFQGLPGPTGAPGEPGKPGDQGVPGE 692
Query: 240 SSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPG 274
A GP PG L GP P PG
Sbjct: 693 GGAAGPTGPRGERGFPGERGGAGPQGLQGPRGLPGTPG 730
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 67/212 (31%), Gaps = 21/212 (9%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P G + A PG P L GP PG P LPG PG + A G
Sbjct: 522 PGQDGLAGAKGAPGDRGVPGLSGPKGGTGDPGRPGEPGLPGARGLTGRPGDAGAQGKVGA 581
Query: 87 SSA---------------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
+ A PG PGP A PG L G + LPG
Sbjct: 582 TGAPGEDGRPGPPGPLGARGQPG---VMGFPGPKGANGEPGKPGEKGLVGRTGLRGLPGK 638
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
GP G PGPS LPGP+ AP PG +PG A
Sbjct: 639 DGETGPSGPPGPVGAVGERGEQGQPGPSGFQGLPGPTGAPGEPGKPGDQGVPGEGGAAGP 698
Query: 192 PGPSSAPDLPGPSSA---PDLPGPSSAPDLPG 220
GP PG L GP P PG
Sbjct: 699 TGPRGERGFPGERGGAGPQGLQGPRGLPGTPG 730
>gi|52346218|ref|NP_001005153.1| collagen alpha-1(X) chain precursor [Sus scrofa]
gi|7141254|gb|AAF37271.1|AF222861_1 type X collagen [Sus scrofa]
Length = 675
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 61/157 (38%), Gaps = 16/157 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P PG + P LPG P PG + P PG P LPG L G LPG
Sbjct: 266 KPGAPGAAGQPGLPGTKGHPGAPGMAGPPGAPG-FGKPGLPG------LKGQRGPIGLPG 318
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
A GP+ P PG + P GP +PG + +PGP L GP+ P
Sbjct: 319 APGAKGEQGPAGHPGEPGLTGPPGSRGPQGPKGIPGNNG---VPGPKGEIGLAGPAGFPG 375
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
G GPS PG P L GP P L
Sbjct: 376 AKGER------GPSGLDGKPGYPGEPGLNGPKGNPGL 406
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 60/158 (37%), Gaps = 16/158 (10%)
Query: 61 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
P PG + P LPG P PG + P PG P LPG L G LP
Sbjct: 265 GKPGAPGAAGQPGLPGTKGHPGAPGMAGPPGAPG-FGKPGLPG------LKGQRGPIGLP 317
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
G A GP+ P PG + P GP +PG + +PGP L GP+ P
Sbjct: 318 GAPGAKGEQGPAGHPGEPGLTGPPGSRGPQGPKGIPGNNG---VPGPKGEIGLAGPAGFP 374
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
G GPS PG P L GP P L
Sbjct: 375 GAKGER------GPSGLDGKPGYPGEPGLNGPKGNPGL 406
>gi|401885579|gb|EJT49686.1| circumsporozoite protein [Trichosporon asahii var. asahii CBS 2479]
Length = 371
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 52/116 (44%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 91
P+S P PSS P PSS P PSS P PSS P PSS P PSS
Sbjct: 90 PTSGGGQPTPSSGGSQPTPSSGGGQPTPSSGGSQPTPSSGGGQPTPSSGGGQPTPSSGGG 149
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
P PSS P PSS P PSS P PSS PSS+ P PSS P
Sbjct: 150 QPTPSSGGGQPTPSSGGGQPTPSSGGGQPTPSSGGGQTTPSSSGGQPTPSSNGGKP 205
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 52/116 (44%)
Query: 95 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 154
P+S P PSS P PSS P PSS P PSS P PSS P PSS
Sbjct: 90 PTSGGGQPTPSSGGSQPTPSSGGGQPTPSSGGSQPTPSSGGGQPTPSSGGGQPTPSSGGG 149
Query: 155 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
P PSS P PSS P PSS P PSS PSS+ P PSS P
Sbjct: 150 QPTPSSGGGQPTPSSGGGQPTPSSGGGQPTPSSGGGQTTPSSSGGQPTPSSNGGKP 205
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 55/127 (43%), Gaps = 4/127 (3%)
Query: 50 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 109
P+S P PSS P PSS P PSS P PSS P PSS P PSS
Sbjct: 90 PTSGGGQPTPSSGGSQPTPSSGGGQPTPSSGGSQPTPSSGGGQPTPSSGGGQPTPSSGGG 149
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--- 166
P PSS P PSS P PSS P PSS PSS+ P PSS P
Sbjct: 150 QPTPSSGGGQPTPSSGGGQPTPSSGGGQPTPSSGGGQTTPSSSGGQPTPSSNGGKPSTSP 209
Query: 167 -PSSAPD 172
PS D
Sbjct: 210 TPSGGGD 216
>gi|3242649|dbj|BAA29028.1| alpha 1 type I collagen [Rana catesbeiana]
Length = 1445
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 71/191 (37%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P E PGPS GP A PG GP PG + PGP+ A
Sbjct: 784 PGERGEPGPSGPAGFAGPPGADGQPGAKGEQGDAGPKGDAGPPGAAGPTGAPGPAGAVGA 843
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
GP A GP + PG + PGPS PGPS G GP+
Sbjct: 844 TGPKGARGPAGPPGSTGFPGAAGRVGPPGPSGNAGPPGPSGPAGKEGQKGPRGETGPAGR 903
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
P PG + P G +P GP+ AP +PGP G P G P LPGP
Sbjct: 904 PGEPGAAGPPGPSGEKGSPGSDGPAGAPGIPGPQGIAGTRGTVGLPGQRGERGFPGLPGP 963
Query: 204 SSAPDLPGPSS 214
+ P G S
Sbjct: 964 TGEPGKQGSSG 974
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 75/202 (37%), Gaps = 3/202 (1%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
GP+ + PG P GPS GP A PG GP PG +
Sbjct: 776 GPTGSRGAPGERGEP---GPSGPAGFAGPPGADGQPGAKGEQGDAGPKGDAGPPGAAGPT 832
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
PGP+ A GP A GP + PG + PGPS PGPS G
Sbjct: 833 GAPGPAGAVGATGPKGARGPAGPPGSTGFPGAAGRVGPPGPSGNAGPPGPSGPAGKEGQK 892
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
GP+ P PG + P G +P GP+ AP +PGP G P
Sbjct: 893 GPRGETGPAGRPGEPGAAGPPGPSGEKGSPGSDGPAGAPGIPGPQGIAGTRGTVGLPGQR 952
Query: 211 GPSSAPDLPGPSSAPDLPGPSS 232
G P LPGP+ P G S
Sbjct: 953 GERGFPGLPGPTGEPGKQGSSG 974
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 75/202 (37%), Gaps = 3/202 (1%)
Query: 49 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 108
GP+ + PG P GPS GP A PG GP PG +
Sbjct: 776 GPTGSRGAPGERGEP---GPSGPAGFAGPPGADGQPGAKGEQGDAGPKGDAGPPGAAGPT 832
Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 168
PGP+ A GP A GP + PG + PGPS PGPS G
Sbjct: 833 GAPGPAGAVGATGPKGARGPAGPPGSTGFPGAAGRVGPPGPSGNAGPPGPSGPAGKEGQK 892
Query: 169 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
GP+ P PG + P G +P GP+ AP +PGP G P
Sbjct: 893 GPRGETGPAGRPGEPGAAGPPGPSGEKGSPGSDGPAGAPGIPGPQGIAGTRGTVGLPGQR 952
Query: 229 GPSSAPDLPGPSSAPDLPGPSS 250
G P LPGP+ P G S
Sbjct: 953 GERGFPGLPGPTGEPGKQGSSG 974
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 90/264 (34%), Gaps = 27/264 (10%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-----------------------SSAPDL 74
+PG A LPG GP A PG + P
Sbjct: 714 MPGERGAGGLPGAKGDRGDQGPKGADGAPGKDGVRGLTGPIGPPGPGGAPGDKGEAGPAG 773
Query: 75 P-GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
P GP+ + PG PGPS GP A PG GP PG +
Sbjct: 774 PAGPTGSRGAPGERGE---PGPSGPAGFAGPPGADGQPGAKGEQGDAGPKGDAGPPGAAG 830
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
PGP+ A GP A GP + PG + PGPS PGPS G
Sbjct: 831 PTGAPGPAGAVGATGPKGARGPAGPPGSTGFPGAAGRVGPPGPSGNAGPPGPSGPAGKEG 890
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
GP+ P PG + P G +P GP+ AP +PGP G P
Sbjct: 891 QKGPRGETGPAGRPGEPGAAGPPGPSGEKGSPGSDGPAGAPGIPGPQGIAGTRGTVGLPG 950
Query: 254 LPGPSSAPDLPGPSSAPDLPGPSS 277
G P LPGP+ P G S
Sbjct: 951 QRGERGFPGLPGPTGEPGKQGSSG 974
>gi|119631314|gb|EAX10909.1| collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV,
autosomal dominant), isoform CRA_a [Homo sapiens]
Length = 1127
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 93/244 (38%), Gaps = 27/244 (11%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
G + AP L G + LPG + AP GP AP G P LPG + A G +
Sbjct: 15 GETGAPGLKGENG---LPGENGAPGPMGPRGAP---GERGRPGLPGAAGARGNDGARGSD 68
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
PGP P G +P GP P + G GP+ P PG A PGP+
Sbjct: 69 GQPGPPGPPGTAGFPGSPGAKGP---PGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPA 125
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
A PG PG + A PGP G +PG A G +P P
Sbjct: 126 GANGAPGLRGGAGEPGKNGAKGEPGPR------GERGEAGIPGVPGAKGEDGKDGSPGEP 179
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
G + P G AP GP+ GP+ P GP+ PGP+ GP A
Sbjct: 180 GANGLPGAAGERGAPGFRGPA------GPNGIPGEKGPAGERGAPGPA------GPRGAA 227
Query: 271 DLPG 274
PG
Sbjct: 228 GEPG 231
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 93/244 (38%), Gaps = 27/244 (11%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
G + AP L G + LPG + AP GP AP G P LPG + A G +
Sbjct: 15 GETGAPGLKGENG---LPGENGAPGPMGPRGAP---GERGRPGLPGAAGARGNDGARGSD 68
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 159
PGP P G +P GP P + G GP+ P PG A PGP+
Sbjct: 69 GQPGPPGPPGTAGFPGSPGAKGP---PGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPA 125
Query: 160 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
A PG PG + A PGP G +PG A G +P P
Sbjct: 126 GANGAPGLRGGAGEPGKNGAKGEPGPR------GERGEAGIPGVPGAKGEDGKDGSPGEP 179
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 279
G + P G AP GP+ GP+ P GP+ PGP+ GP A
Sbjct: 180 GANGLPGAAGERGAPGFRGPA------GPNGIPGEKGPAGERGAPGPA------GPRGAA 227
Query: 280 DLPG 283
PG
Sbjct: 228 GEPG 231
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 88/229 (38%), Gaps = 21/229 (9%)
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
G + AP L G + LPG + AP GP AP G P LPG + A G +
Sbjct: 15 GETGAPGLKGENG---LPGENGAPGPMGPRGAP---GERGRPGLPGAAGARGNDGARGSD 68
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
PGP P G +P GP P + G GP+ P PG A PGP+
Sbjct: 69 GQPGPPGPPGTAGFPGSPGAKGP---PGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPA 125
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
A PG PG + A PGP G +PG A G +P P
Sbjct: 126 GANGAPGLRGGAGEPGKNGAKGEPGPR------GERGEAGIPGVPGAKGEDGKDGSPGEP 179
Query: 247 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
G + P G AP GP+ GP+ P GP+ PGP+
Sbjct: 180 GANGLPGAAGERGAPGFRGPA------GPNGIPGEKGPAGERGAPGPAG 222
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 82/224 (36%), Gaps = 21/224 (9%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P E PGP PG P LPG + A G + PGP P G +P
Sbjct: 29 PGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGA 88
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
GP P + G GP+ P PG A PGP+ A PG PG + A
Sbjct: 89 KGP---PGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGA 145
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
PGP G +PG A G +P PG + P G AP GP
Sbjct: 146 KGEPGPR------GERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGP 199
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
+ GP+ P GP+ PGP+ GP A PG
Sbjct: 200 A------GPNGIPGEKGPAGERGAPGPA------GPRGAAGEPG 231
>gi|114608071|ref|XP_001136406.1| PREDICTED: collagen alpha-1(IX) chain isoform 1 [Pan troglodytes]
Length = 921
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 78/233 (33%), Gaps = 15/233 (6%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG S P LPG G P G G GP A L G +
Sbjct: 417 PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGEFGEVGAQGPPGAQGLRGITGI 476
Query: 90 PDLPGPSSAPDL---PGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G A L PGP P PG P GP + G P LPG
Sbjct: 477 VGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGVEGARGIPGLPGSKGD 536
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
LPG +PG +PG P PGP L G P +PG G
Sbjct: 537 TGLPGVDGRDGIPG------MPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGS 590
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ AP PG PG P GP LPG S +L GP +P LPG
Sbjct: 591 AGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLPG--SRGEL-GPVGSPGLPG 640
>gi|38649122|gb|AAH63249.1| Collagen, type I, alpha 1 [Danio rerio]
Length = 1447
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 89/248 (35%), Gaps = 24/248 (9%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
LPGP A PG S PG + AP G PG AP GP A PG +
Sbjct: 629 LPGPQGATGEPGKSGEQGAPGEAGAPGPSGSRGDRGFPGERGAPGPAGPVGARGSPGSAG 688
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------------PSS 169
G S A PG P L G +PG A LPG +
Sbjct: 689 NDGAKGESGAAGAPGAQGPPGLQG------MPGERGAAGLPGLKGDRGDQGAKGADGAAG 742
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
+ G + PGP+ AP G S A L GP+ A PG PGP+ G
Sbjct: 743 KDGIRGMTGPIGPPGPAGAPGDKGESGAQGLVGPTGARGPPGERGETGAPGPAG---FAG 799
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
P A LPG P G PGP+ A PGP GP A GP A
Sbjct: 800 PPGADGLPGAKGEPGDNGAKGDAGAPGPAGATGAPGPQGPVGATGPKGARGAAGPPGATG 859
Query: 290 LPGPSSTV 297
PG + V
Sbjct: 860 FPGAAGRV 867
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 87/243 (35%), Gaps = 24/243 (9%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPGP A PG S PG + AP G PG AP GP A PG +
Sbjct: 629 LPGPQGATGEPGKSGEQGAPGEAGAPGPSGSRGDRGFPGERGAPGPAGPVGARGSPGSAG 688
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------------PSS 133
G S A PG P L G +PG A LPG +
Sbjct: 689 NDGAKGESGAAGAPGAQGPPGLQG------MPGERGAAGLPGLKGDRGDQGAKGADGAAG 742
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
+ G + PGP+ AP G S A L GP+ A PG PGP+ G
Sbjct: 743 KDGIRGMTGPIGPPGPAGAPGDKGESGAQGLVGPTGARGPPGERGETGAPGPAG---FAG 799
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
P A LPG P G PGP+ A PGP GP A GP A
Sbjct: 800 PPGADGLPGAKGEPGDNGAKGDAGAPGPAGATGAPGPQGPVGATGPKGARGAAGPPGATG 859
Query: 254 LPG 256
PG
Sbjct: 860 FPG 862
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 87/243 (35%), Gaps = 24/243 (9%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
LPGP A PG S PG + AP G PG AP GP A PG +
Sbjct: 629 LPGPQGATGEPGKSGEQGAPGEAGAPGPSGSRGDRGFPGERGAPGPAGPVGARGSPGSAG 688
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------------PSS 160
G S A PG P L G +PG A LPG +
Sbjct: 689 NDGAKGESGAAGAPGAQGPPGLQG------MPGERGAAGLPGLKGDRGDQGAKGADGAAG 742
Query: 161 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
+ G + PGP+ AP G S A L GP+ A PG PGP+ G
Sbjct: 743 KDGIRGMTGPIGPPGPAGAPGDKGESGAQGLVGPTGARGPPGERGETGAPGPAG---FAG 799
Query: 221 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 280
P A LPG P G PGP+ A PGP GP A GP A
Sbjct: 800 PPGADGLPGAKGEPGDNGAKGDAGAPGPAGATGAPGPQGPVGATGPKGARGAAGPPGATG 859
Query: 281 LPG 283
PG
Sbjct: 860 FPG 862
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 85/249 (34%), Gaps = 30/249 (12%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E GP LPGP A PG S PG + AP G PG AP G
Sbjct: 617 EQGAAGPPGFQGLPGPQGATGEPGKSGEQGAPGEAGAPGPSGSRGDRGFPGERGAPGPAG 676
Query: 86 PSSAPDLPGPSSAPDLPGPSSA------------PDLPGPSSAPDLPG------------ 121
P A PG + G S A +PG A LPG
Sbjct: 677 PVGARGSPGSAGNDGAKGESGAAGAPGAQGPPGLQGMPGERGAAGLPGLKGDRGDQGAKG 736
Query: 122 ---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
+ + G + PGP+ AP G S A L GP+ A PG PGP+
Sbjct: 737 ADGAAGKDGIRGMTGPIGPPGPAGAPGDKGESGAQGLVGPTGARGPPGERGETGAPGPAG 796
Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
GP A LPG P G PGP+ A PGP GP A G
Sbjct: 797 ---FAGPPGADGLPGAKGEPGDNGAKGDAGAPGPAGATGAPGPQGPVGATGPKGARGAAG 853
Query: 239 PSSAPDLPG 247
P A PG
Sbjct: 854 PPGATGFPG 862
>gi|211700|gb|AAA48736.1| type X collagen, partial [Gallus gallus]
Length = 608
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 66/174 (37%), Gaps = 33/174 (18%)
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
GP+ P GP+ GP LPG + LPGP D+ GP PG
Sbjct: 245 GPAGVPGELGPAGPQGNMGPQGLKGLPGENG---LPGPKG--DM-GPVGPAGFPGAKGER 298
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
LPG P PG LPGP P LPG G + P LPGP GP
Sbjct: 299 GLPGLDGKPGYPGEQG---LPGPKGHPGLPGQKGDT---GHAGHPGLPGPV------GPQ 346
Query: 259 SAPDLPGPSSAPDLPGPSSAPDL---------------PGPSSAPDLPGPSSTV 297
+PG + P GPS P + G + AP LPGP+ V
Sbjct: 347 GVKGVPGINGEPGPRGPSGIPGVRGPIGPPGMPGAPGAKGEAGAPGLPGPAGIV 400
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 77/216 (35%), Gaps = 47/216 (21%)
Query: 46 DLPGPSSAPDLPG--PSSAPDLPGPSSAPDLP------------GPSSAPDLPGPSSAPD 91
LPGP+ P PG P LPG GP+ P GP+
Sbjct: 201 GLPGPAGLPGSPGLPGFGKPGLPGMKGHRGPEGPPGFPGPKGDQGPAGVPGELGPAGPQG 260
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
GP LPG + LPGP D+ GP PG LPG P PG
Sbjct: 261 NMGPQGLKGLPGENG---LPGPKG--DM-GPVGPAGFPGAKGERGLPGLDGKPGYPGEQG 314
Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
LPGP P LPG G + P LPGP GP +PG + P G
Sbjct: 315 ---LPGPKGHPGLPGQKGD---TGHAGHPGLPGPV------GPQGVKGVPGINGEPGPRG 362
Query: 212 PSSAPDL---------------PGPSSAPDLPGPSS 232
PS P + G + AP LPGP+
Sbjct: 363 PSGIPGVRGPIGPPGMPGAPGAKGEAGAPGLPGPAG 398
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 58/155 (37%), Gaps = 30/155 (19%)
Query: 12 EADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 71
+ + P + P E LPGP D+ GP PG LPG P PG
Sbjct: 259 QGNMGPQGLKGLPGENGLPGPKG--DM-GPVGPAGFPGAKGERGLPGLDGKPGYPGEQG- 314
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
LPGP P LPG G + P LPGP GP +PG + P GP
Sbjct: 315 --LPGPKGHPGLPGQKGDT---GHAGHPGLPGPV------GPQGVKGVPGINGEPGPRGP 363
Query: 132 SSAPDL---------------PGPSSAPDLPGPSS 151
S P + G + AP LPGP+
Sbjct: 364 SGIPGVRGPIGPPGMPGAPGAKGEAGAPGLPGPAG 398
>gi|297678468|ref|XP_002817092.1| PREDICTED: collagen alpha-1(IX) chain isoform 1 [Pongo abelii]
Length = 921
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 78/233 (33%), Gaps = 15/233 (6%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG S P LPG G P G G GP A L G +
Sbjct: 417 PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGI 476
Query: 90 PDLPGPSSAPDL---PGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G A L PGP P PG P GP G P LPGP
Sbjct: 477 VGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGPKGD 536
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
LPG +PG +PG P PGP L G P +PG G
Sbjct: 537 TGLPGVDGRDGIPG------MPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGS 590
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ AP PG PG P GP LPG S +L GP +P LPG
Sbjct: 591 TGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLPG--SRGEL-GPVGSPGLPG 640
>gi|291320480|ref|YP_003515744.1| variable surface lipoprotein D1 [Mycoplasma agalactiae]
gi|291320710|ref|YP_003515975.1| variable surface lipoprotein D1 [Mycoplasma agalactiae]
gi|240247716|emb|CAX65720.1| Variable surface lipoprotein D1 (VpmaD1) [Mycoplasma agalactiae]
gi|240247743|emb|CAX65746.1| Variable surface lipoprotein D1 (VpmaD1) [Mycoplasma agalactiae]
gi|290752815|emb|CBH40790.1| Variable surface lipoprotein D1 (VpmaD1) [Mycoplasma agalactiae]
gi|290753046|emb|CBH41022.1| Variable surface lipoprotein D1 (VpmaD1) [Mycoplasma agalactiae]
Length = 488
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 127/315 (40%), Gaps = 27/315 (8%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPS 69
AD T + +P PG A P S+ P PG S+ P PG A P S
Sbjct: 172 ADINSGTRSVQPSGATQPGKPGASTQPSGSAQPGKPGASTQPSGSAQPGKPGASTQPSGS 231
Query: 70 SAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPS 123
+ P PG S+ P PG A P S+ P PG S+ P PG A P S
Sbjct: 232 AQPGKPGASTQPSGSAQPGKPGASTQPSGSAQPGKPGASTQPSGSAQPGKPGASTQPSGS 291
Query: 124 SAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPS 177
+ P PG S+ P PG A P S+ P PG S+ P PG A P S
Sbjct: 292 AQPGKPGASTQPSGSAQPGKPGASTQPSGSAQPGKPGASTQPSGSAQPGKPGASTQPSGS 351
Query: 178 SAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPS 231
+ P PG S+ P PG A P S+ P PG S+ P PG A P S
Sbjct: 352 AQPGKPGASTQPSGSAQPGKPGASTQPSGSAQPGKPGASTQPSGSAQPGKPGASTQPSGS 411
Query: 232 SAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPS 285
+ P PG S+ P PG A P S+ P PG S+ P PG A P S
Sbjct: 412 AQPGKPGASTQPSGSAQPGKPGASTQPSGSAQPGKPGASTQPSGSAQPGKPGASTQPSGS 471
Query: 286 SAPDLPGPSSTVLGS 300
+ P PG S+ GS
Sbjct: 472 AQPGKPGASTQPSGS 486
>gi|340722701|ref|XP_003399742.1| PREDICTED: collagen alpha-1(XI) chain-like [Bombus terrestris]
Length = 1805
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 76/246 (30%), Gaps = 24/246 (9%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
L GP P +PG S A PG P +PG GP PG + G
Sbjct: 701 LVGPQGKPGIPGLSGADGSPGHPGNPGVPGMKGEQGPQGPQGPIGFPGVRG---MKGDEG 757
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
PG GP G P L GP P L G GP L G
Sbjct: 758 KRGSPGERGEKGERGPEGEKGDIGTKGEPGLSGPQGIPGLEGLEGPKGFEGPRGETGLVG 817
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP----- 230
P G + P G G P GPS G + A G
Sbjct: 818 ---LPGEKGKTGPPGFVGYPGNVGEKGDKGQPGREGPSGDKGERGNNGASGERGEPGPRG 874
Query: 231 -------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPD 280
A LPGP PGP P L G S P + GP +P G +
Sbjct: 875 FRGARGRRGAEGLPGPKGDTGQPGP---PGLQGESGTPGVEGPRGFVGSPGQAGLNGKDG 931
Query: 281 LPGPSS 286
+PGPS
Sbjct: 932 IPGPSG 937
>gi|301766572|ref|XP_002918708.1| PREDICTED: hypothetical protein LOC100472350 [Ailuropoda
melanoleuca]
Length = 1298
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
GP+ P PG A PGP+ PG A PG + A PGP G + +P
Sbjct: 315 GPAGIPGAPGLIGARGPPGPAGTNGAPGQRGAAGEPGKNGAKGEPGPRGER---GEAGSP 371
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
+PGP G +P PG + P G AP GP+ A LPG
Sbjct: 372 GIPGPKGED---GKDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPG 417
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Query: 49 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 108
GP+ P PG A PGP+ PG A PG + A PGP G + +P
Sbjct: 315 GPAGIPGAPGLIGARGPPGPAGTNGAPGQRGAAGEPGKNGAKGEPGPRGER---GEAGSP 371
Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
+PGP G +P PG + P G AP GP+ A LPG
Sbjct: 372 GIPGPKGED---GKDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPG 417
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Query: 94 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 153
GP+ P PG A PGP+ PG A PG + A PGP G + +P
Sbjct: 315 GPAGIPGAPGLIGARGPPGPAGTNGAPGQRGAAGEPGKNGAKGEPGPRGER---GEAGSP 371
Query: 154 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+PGP G +P PG + P G AP GP+ A LPG
Sbjct: 372 GIPGPKGED---GKDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPG 417
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
GP+ P PG A PGP+ PG A PG + A PGP G + +P
Sbjct: 315 GPAGIPGAPGLIGARGPPGPAGTNGAPGQRGAAGEPGKNGAKGEPGPRGER---GEAGSP 371
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
+PGP G +P PG + P G AP GP+ A LPG
Sbjct: 372 GIPGPKGED---GKDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPG 417
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
GP+ P PG A PGP+ PG A PG + A PGP G + +P
Sbjct: 315 GPAGIPGAPGLIGARGPPGPAGTNGAPGQRGAAGEPGKNGAKGEPGPRGER---GEAGSP 371
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
+PGP G +P PG + P G AP GP+ A LPG
Sbjct: 372 GIPGPKGED---GKDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPG 417
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
GP+ P PG A PGP+ PG A PG + A PGP G + +P
Sbjct: 315 GPAGIPGAPGLIGARGPPGPAGTNGAPGQRGAAGEPGKNGAKGEPGPRGER---GEAGSP 371
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
+PGP G +P PG + P G AP GP+ A LPG
Sbjct: 372 GIPGPKGED---GKDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPG 417
>gi|350424349|ref|XP_003493766.1| PREDICTED: collagen alpha-1(XI) chain-like [Bombus impatiens]
Length = 1804
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 76/246 (30%), Gaps = 24/246 (9%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
L GP P +PG S A PG P +PG GP PG + G
Sbjct: 700 LVGPQGKPGIPGLSGADGSPGHPGNPGVPGMKGEQGPQGPQGPIGFPGVRG---MKGDEG 756
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
PG GP G P L GP P L G GP L G
Sbjct: 757 KRGSPGERGEKGERGPEGEKGDIGAKGEPGLSGPQGIPGLEGLEGPKGFEGPRGETGLVG 816
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP----- 230
P G + P G G P GPS G + A G
Sbjct: 817 ---LPGEKGKTGPPGFVGYPGNVGEKGDKGQPGREGPSGDKGERGNNGASGERGEPGPRG 873
Query: 231 -------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPD 280
A LPGP PGP P L G S P + GP +P G +
Sbjct: 874 FRGARGRRGAEGLPGPKGDTGQPGP---PGLQGESGTPGVEGPRGFVGSPGQAGLNGKDG 930
Query: 281 LPGPSS 286
+PGPS
Sbjct: 931 IPGPSG 936
>gi|284413718|ref|NP_001165114.1| collagen precursor [Bombyx mori]
gi|223671394|tpd|FAA00649.1| TPA: putative cuticle protein [Bombyx mori]
Length = 1640
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 87/270 (32%), Gaps = 35/270 (12%)
Query: 22 ERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
++P P PG P PG P PG P PG P PG P PG P
Sbjct: 489 DQPSYPGQPGQPGTPGYPG---QPGYPGQPGTPGQPGTPGQPGYPGQGGQPINPG---QP 542
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--------- 132
PG P PG P PG P PG P PG P PG S
Sbjct: 543 GYPGQPGQPGYPGQPGQPGTPGQPGTPGQPGTPGQPGQPGYPGTPGQPGQSGYPGQGGPQ 602
Query: 133 -----------------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
P PG P PG P PG P PG + P P
Sbjct: 603 QGGYPGQPGQPGYPGQPGQPGTPGQPGTPGQPGTPGQPGTPGQPGQPGYPGQAGQPVNPA 662
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 235
P PG P PG P PG P PG P PG + P P + P
Sbjct: 663 QPGYPGQPGQPGYPGQPGQPGTPGQPGTPGQPGTPGQPGQPGYPGQAGQPVNP---AQPG 719
Query: 236 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
PG S P PG P PG P PG
Sbjct: 720 YPGQPSQPGYPGQPGQPGTPGQPGTPGQPG 749
>gi|332209567|ref|XP_003253886.1| PREDICTED: collagen alpha-1(III) chain [Nomascus leucogenys]
Length = 1466
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 105/297 (35%), Gaps = 42/297 (14%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E LPGP P + GP+ P PG G + G + AP L G +
Sbjct: 238 RPGERGLPGP---PGIKGPAGIPGFPGMKGHRGFDGRAGE---KGETGAPGLKGENG--- 288
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG + A PGP PG P LPG + A G + PGP P G
Sbjct: 289 LPGENGA---PGPMGPRGTPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPG 345
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---------------------GPSSAPD 181
+P G PG + AP G GP+ P
Sbjct: 346 SPGAKGEVGPAGSPGSNGAPGQRGEPGPQGQAGAQGPPGPPGSSGSPGGKGEMGPAGIPG 405
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPG 238
PG A PGP+ A PG PG + A PGP +PG A G
Sbjct: 406 APGLMGARGPPGPAGANGAPGLRGGAGEPGKNGARGEPGPRGERGEAGIPGVPGAKGEDG 465
Query: 239 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
+P PG + P G AP GP+ GP+ P GP+ PGP+
Sbjct: 466 KDGSPGEPGANGLPGAAGERGAPGFRGPA------GPNGIPGEKGPAGERGAPGPAG 516
>gi|410947740|ref|XP_003980600.1| PREDICTED: collagen alpha-2(IV) chain [Felis catus]
Length = 1712
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 72/196 (36%), Gaps = 19/196 (9%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP------SSAP 81
DLPG +P L G PG G PG + P + GP + P
Sbjct: 1098 DLPG---SPGLKGERGIAGAPGLKGFFGEKGTEGEVGFPGITGVPGVQGPPGPKGQAGFP 1154
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
L G PG + AP G P +PG P + G S LPG P PG
Sbjct: 1155 GLTGLQGPQGEPGRAGAPGDKGDYGWPGIPGSPGFPGIRGISGLHGLPGTKGFPGSPGVD 1214
Query: 142 SAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------ 193
+ D PGP A D P A PGP AP G P GP +P L G
Sbjct: 1215 AHGDPGFPGP--AGDRGDPGEANTRPGPVGAPGQKGERGNPGERGPVGSPGLQGFPGITP 1272
Query: 194 PSSAPDLPGPSSAPDL 209
PS+ PG AP +
Sbjct: 1273 PSNISGSPGDKGAPGI 1288
>gi|344292438|ref|XP_003417934.1| PREDICTED: collagen alpha-4(IV) chain [Loxodonta africana]
Length = 1683
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 89/251 (35%), Gaps = 15/251 (5%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P G S P + GP PGP+ + PG P L GP G P PG
Sbjct: 765 PGKRGLSGVPGVKGPRGDLGHPGPAGSAGTPG---IPGLKGPKGREGSAGFPGIPGPPGH 821
Query: 87 SSAPDLPGPSSAPDLPG-PSS--APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
S PG P LPG P S AP G PGP+ LPG AP PG A
Sbjct: 822 SCERGAPGMLGQPGLPGAPGSPGAPGWKGQRGDQGPPGPAGMKGLPG---APGQPG---A 875
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
LPGP L G P LPGP LPG P PG P L G G
Sbjct: 876 DGLPGPPGISGLFGDDGLPGLPGPHGPQGLPG---VPGFPGERGKPGLEGRPGRKGEHGE 932
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
P L G A G P G + + G + P PG + G +P +
Sbjct: 933 KGLPGLLGDRGARGAKGERGPPGDEGEIAIISIKGKTGEPGPPGDAGVSGEKGDKGSPGM 992
Query: 264 PGPSSAPDLPG 274
G P G
Sbjct: 993 QGRKGEPGTHG 1003
>gi|189441709|gb|AAI67477.1| Col2a1a protein [Danio rerio]
Length = 1421
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 74/221 (33%), Gaps = 9/221 (4%)
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
PG P G + A PG P L GP PG P LPG PG + A
Sbjct: 446 PGNRGFPGQDGLAGAKGAPGDRGVPGLSGPKGGTGDPGRPGEPGLPGARGLTGRPGDAGA 505
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
G + AP G P G P + G PGP A PG L G
Sbjct: 506 QGKVGATGAPGEDGRPGPPGPLGARGQPGVMG------FPGPKGANGEPGKPGEKGLVGR 559
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
+ LPG GP G PGPS LPGP+ AP PG +
Sbjct: 560 TGLRGLPGKDGETGPSGPPGPVGAVGERGEQGQPGPSGFQGLPGPTGAPGEPGKPGDQGV 619
Query: 255 PGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPG 292
PG A GP PG L GP P PG
Sbjct: 620 PGEGGAAGPTGPRGERGFPGERGGAGPQGLQGPRGLPGTPG 660
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 72/218 (33%), Gaps = 12/218 (5%)
Query: 66 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
PG P G + A PG P L GP PG P LPG PG + A
Sbjct: 446 PGNRGFPGQDGLAGAKGAPGDRGVPGLSGPKGGTGDPGRPGEPGLPGARGLTGRPGDAGA 505
Query: 126 PDLPGPSSAPDLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
G + AP G A PG PGP A PG L G +
Sbjct: 506 QGKVGATGAPGEDGRPGPPGPLGARGQPG---VMGFPGPKGANGEPGKPGEKGLVGRTGL 562
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
LPG GP G PGPS LPGP+ AP PG +PG
Sbjct: 563 RGLPGKDGETGPSGPPGPVGAVGERGEQGQPGPSGFQGLPGPTGAPGEPGKPGDQGVPGE 622
Query: 240 SSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPG 274
A GP PG L GP P PG
Sbjct: 623 GGAAGPTGPRGERGFPGERGGAGPQGLQGPRGLPGTPG 660
Score = 38.1 bits (87), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 67/212 (31%), Gaps = 21/212 (9%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P G + A PG P L GP PG P LPG PG + A G
Sbjct: 452 PGQDGLAGAKGAPGDRGVPGLSGPKGGTGDPGRPGEPGLPGARGLTGRPGDAGAQGKVGA 511
Query: 87 SSA---------------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
+ A PG PGP A PG L G + LPG
Sbjct: 512 TGAPGEDGRPGPPGPLGARGQPG---VMGFPGPKGANGEPGKPGEKGLVGRTGLRGLPGK 568
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
GP G PGPS LPGP+ AP PG +PG A
Sbjct: 569 DGETGPSGPPGPVGAVGERGEQGQPGPSGFQGLPGPTGAPGEPGKPGDQGVPGEGGAAGP 628
Query: 192 PGPSSAPDLPGPSSA---PDLPGPSSAPDLPG 220
GP PG L GP P PG
Sbjct: 629 TGPRGERGFPGERGGAGPQGLQGPRGLPGTPG 660
>gi|440893297|gb|ELR46121.1| Collagen alpha-2(I) chain [Bos grunniens mutus]
Length = 1366
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 75/214 (35%), Gaps = 35/214 (16%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E + GP A PG P G L G P PG P PG +
Sbjct: 152 RPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG--- 208
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---------------------- 120
PG + A LPG PGP+ A G S P P
Sbjct: 209 TPGQTGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGEL 267
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
GP P GP+ GP LPG S PG A LPG A LPG + AP
Sbjct: 268 GPVGNPGPAGPA------GPRGEVGLPGLSGPVGPPGNPGANGLPGAKGAAGLPGVAGAP 321
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 214
LPGP +PGP A G PGP+
Sbjct: 322 GLPGPRG---IPGPVGASGATGARGLVGEPGPAG 352
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 86/232 (37%), Gaps = 31/232 (13%)
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
P PG + GP A PG P G L G P PG P PG
Sbjct: 147 PGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGE 206
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLP------- 201
+ PG + A LPG PGP+ A G S P P GP + P
Sbjct: 207 NG---TPGQTGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPG 262
Query: 202 -----GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
GP P GP+ GP LPG S PG A LPG A LPG
Sbjct: 263 PKGELGPVGNPGPAGPA------GPRGEVGLPGLSGPVGPPGNPGANGLPGAKGAAGLPG 316
Query: 257 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQ 308
+ AP LPGP +PGP A G PGP+ + GE+G++
Sbjct: 317 VAGAPGLPGPRG---IPGPVGASGATGARGLVGEPGPAGS-----KGESGNK 360
Score = 38.5 bits (88), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 75/219 (34%), Gaps = 35/219 (15%)
Query: 36 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 95
P PG + GP A PG P G L G P PG P PG
Sbjct: 147 PGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGE 206
Query: 96 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----------------- 138
+ PG + A LPG PGP+ A G S P P
Sbjct: 207 NG---TPGQTGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPG 262
Query: 139 -----GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
GP P GP+ GP LPG S PG A LPG A LPG
Sbjct: 263 PKGELGPVGNPGPAGPA------GPRGEVGLPGLSGPVGPPGNPGANGLPGAKGAAGLPG 316
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
+ AP LPGP +PGP A G PGP+
Sbjct: 317 VAGAPGLPGPRG---IPGPVGASGATGARGLVGEPGPAG 352
Score = 38.5 bits (88), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 75/219 (34%), Gaps = 35/219 (15%)
Query: 54 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 113
P PG + GP A PG P G L G P PG P PG
Sbjct: 147 PGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGE 206
Query: 114 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----------------- 156
+ PG + A LPG PGP+ A G S P P
Sbjct: 207 NG---TPGQTGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPG 262
Query: 157 -----GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
GP P GP+ GP LPG S PG A LPG A LPG
Sbjct: 263 PKGELGPVGNPGPAGPA------GPRGEVGLPGLSGPVGPPGNPGANGLPGAKGAAGLPG 316
Query: 212 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
+ AP LPGP +PGP A G PGP+
Sbjct: 317 VAGAPGLPGPRG---IPGPVGASGATGARGLVGEPGPAG 352
>gi|410978895|ref|XP_003995823.1| PREDICTED: collagen alpha-1(XXVII) chain [Felis catus]
Length = 1849
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 64/189 (33%), Gaps = 9/189 (4%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
LPG S P G PGP+ P PGP +P G LPGP P G
Sbjct: 684 LPGLSGNPGPLGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKG 743
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 226
LPG P G P +PG PG P G P L G
Sbjct: 744 SRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGRPG---FPGDFGERGPPGLDGNPGELG 800
Query: 227 LPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
LPGP P L G A PGP L G P L G +PG S G
Sbjct: 801 LPGPRGVPGLIGDMGALGPTGYPGPKGLKGLMGNMGEPGLKGDKGEQGVPGVSGDTGFQG 860
Query: 284 PSSAPDLPG 292
+ LPG
Sbjct: 861 DKGSQGLPG 869
>gi|270003553|gb|EFA00001.1| hypothetical protein TcasGA2_TC002804 [Tribolium castaneum]
Length = 1288
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 121/388 (31%), Positives = 146/388 (37%), Gaps = 98/388 (25%)
Query: 16 LPSTVTERPLEPDLPG----PSSAPDLPG----PSSAPDLPGPSSAPDLPG-PSSAPDLP 66
P +P P +PG P P +PG P P PG + P PG P P +P
Sbjct: 38 FPGEQYRKPGRPSIPGYPAEPGGRPGVPGYPRGPEERPGYPGGPAVPGYPGLPGGRPGIP 97
Query: 67 ----GPSSAPDLPG----PSSAPDLPG----PSSAPDLPG----PSSAPDLPG----PSS 106
P P +PG P P++PG P P +PG P P +PG P
Sbjct: 98 EYPGAPGGRPAIPGYPGGPEGRPEIPGYPGKPEERPGVPGFPGRPDGRPGVPGYPGRPGE 157
Query: 107 APDLPG----PSSAPDLPG----PSSAPDLP-GPSSAPDLPG----PSSAPDLPG-PSSA 152
P++PG P P +PG P P P GP P +PG P P PG P
Sbjct: 158 RPEIPGYPHIPEGRPRIPGYPGRPEERPAYPEGPVEKPGIPGYPEGPEGRPGFPGRPEER 217
Query: 153 PDLPG----PSSAPDLPG----PSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPG- 202
P +PG P P +PG P P PG P +PG S P LPG P PG
Sbjct: 218 PVVPGYPSLPGGRPGVPGYPRGPDGRPAFPG-YPQPGVPGYSKQPGQLPGVPGVPGYPGE 276
Query: 203 PSSAPDLPG--PSSAPDLPGPSSAPDLPGPSSAPDLP----------------------G 238
P + P +PG P PG P PG P P G
Sbjct: 277 PEAKPGVPGYPRPGVPGYPG-GEIPSHPG-GEKPGYPLSPTGPGVPGYPGYPGYPQYPTG 334
Query: 239 PSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSA----PDLPGPSSAPDLPGPSSAPDLPG 292
PS P LP P PG S P+ PG P+ P P P S P +PG P PG
Sbjct: 335 PS--PGLPE---GPSRPGYPSGPEKPGYPPTEGYPLRPGYPTPPSYP-VPGEVGYPTPPG 388
Query: 293 PSST------VLGSYLGEAGHQKSPKGL 314
ST + G Y E G + G+
Sbjct: 389 KVSTGKFSGQLSGDYEAEVGQRGKFSGI 416
>gi|159145790|gb|ABW90432.1| precollagen-D [Mytilus californianus]
Length = 1000
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 54 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 113
P G + PGP PG S + G S AP PG + PG + P PG
Sbjct: 341 PGTAGATGKAGRPGPRG---QPGASGSSGQHGASGAPGRPGNPGSTGRPGATGDPGRPGA 397
Query: 114 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPG 157
+ PGPS AP PG A PGP AP LPGP +P PG
Sbjct: 398 TGTAGRPGPSGAPGNPGAPGAIGAPGPRGAPGFVGLPGPRGSPGEPG 444
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
P G + PGP PG S + G S AP PG + PG + P PG
Sbjct: 341 PGTAGATGKAGRPGPRG---QPGASGSSGQHGASGAPGRPGNPGSTGRPGATGDPGRPGA 397
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPG 184
+ PGPS AP PG A PGP AP LPGP +P PG
Sbjct: 398 TGTAGRPGPSGAPGNPGAPGAIGAPGPRGAPGFVGLPGPRGSPGEPG 444
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 158
P G + PGP PG S + G S AP PG + PG + P PG
Sbjct: 341 PGTAGATGKAGRPGPRG---QPGASGSSGQHGASGAPGRPGNPGSTGRPGATGDPGRPGA 397
Query: 159 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPG 202
+ PGPS AP PG A PGP AP LPGP +P PG
Sbjct: 398 TGTAGRPGPSGAPGNPGAPGAIGAPGPRGAPGFVGLPGPRGSPGEPG 444
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
P G + PGP PG S + G S AP PG + PG + P PG
Sbjct: 341 PGTAGATGKAGRPGPRG---QPGASGSSGQHGASGAPGRPGNPGSTGRPGATGDPGRPGA 397
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPG 220
+ PGPS AP PG A PGP AP LPGP +P PG
Sbjct: 398 TGTAGRPGPSGAPGNPGAPGAIGAPGPRGAPGFVGLPGPRGSPGEPG 444
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP PG S + G S AP PG + PG + P PG + PGPS AP
Sbjct: 352 RPGPRGQPGASGSSGQHGASGAPGRPGNPGSTGRPGATGDPGRPGATGTAGRPGPSGAPG 411
Query: 83 LPGPSSAPDLPGPSSAP---DLPGPSSAPDLPG 112
PG A PGP AP LPGP +P PG
Sbjct: 412 NPGAPGAIGAPGPRGAPGFVGLPGPRGSPGEPG 444
>gi|149030138|gb|EDL85215.1| rCG23167, isoform CRA_a [Rattus norvegicus]
Length = 1136
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 81/229 (35%), Gaps = 22/229 (9%)
Query: 30 PGPSSAPDL---PGPSSAPDLPG-PSSAPD----LPGPSSAPDLPGPSS--APDLPGPSS 79
PGP P L PG P LPG P + D PG P LPG P P
Sbjct: 8 PGPQGIPGLAGAPGKDGIPGLPGFPGTQGDDGSGFPGERGLPGLPGEKGHDGPTGPRGIG 67
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPD 136
P LPGP P G P G A + P P GPS AP PG A
Sbjct: 68 LPGLPGPRGLPGDKGVDGLPGQQGLRGAKGVTLPCIIPGSYGPSGFPGAPGFPGSKGARG 127
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
LPG P G P PG P PG P G P PG PG +
Sbjct: 128 LPGIPGKPGTHGSKGEPGSPGLIHLPGFPG---FPGARGEKGLPGFPGLLGKHGYPGKAG 184
Query: 197 APDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSS 241
+P +PG A D+ G + G LPG P LPGP
Sbjct: 185 SPGVPGSKGVAGDIFGAENGAS--GEQGLQGLPGDKGFPGDSGLPGPKG 231
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 120/454 (26%), Positives = 153/454 (33%), Gaps = 83/454 (18%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP L GP P LPG LPG PG +S +PGP+ P G P
Sbjct: 600 RPGPSGLIGPKGFPGLPGLHGLNGLPGTKGTHGTPG-ASITGVPGPAGLPGPKGEKGMPG 658
Query: 83 L----PGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPG----- 130
+ PG G +P L GP+ P G PS PG P L G
Sbjct: 659 IVIGDPGKQGLRGQKGDQGSPGLQGPAGTPGASGISLPSVIAGQPGDPGQPGLDGERGRP 718
Query: 131 ----------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
PSS PG S P +PG L G P G S L G P
Sbjct: 719 GLPGPPGPPGPSSDQGDPGDSGFPGIPGLQG---LKGNQGLPGFSGLSGDLGLKGMRGEP 775
Query: 181 DLPG---------PSSAPDLPGPSSAPDLPGPSSAPDL----------PGPSSAPDLPGP 221
L G P + G + GP AP PGP P + G
Sbjct: 776 GLMGTPGKIGPPGDPGFPGMKGKAGPRGFSGPQGAPGHTPIAEARHVPPGPLGLPGIDGI 835
Query: 222 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSA 278
PG + L G P +PG LPGPS P LPG P G A
Sbjct: 836 PGLTGDPGSQGSVGLQGSKGLPGIPGKDGPSGLPGPSGILGDPGLPGLQGPPGFEG---A 892
Query: 279 PDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPAQIS---------FVLNIFA 329
P GP P +PG S V + + + + P P P +S FV
Sbjct: 893 PGNQGPIGQPGMPGHSVRVGYTLVKHSQSEHVP----PCPIGMSQLWVGYSLLFVEGQEK 948
Query: 330 NFHQTLRFLHFSCTSLVVTRATVVKLPLYILTVEDDTVILLFIETFIQLPQQAYTTNSFA 389
+Q L F SC T +P + + + + + ++Y ++ A
Sbjct: 949 AHNQDLGFAG-SCLPRFST------MPFIYCNINE-------VCHYARRNDKSYWLSTTA 994
Query: 390 --PMDPSKDDTVILLFIKTC--IQLPQQAYTTNS 419
PM P +T I +I C + P QA +S
Sbjct: 995 PIPMMPV-GETQIPQYISRCSVCEAPSQAIAVHS 1027
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 95/283 (33%), Gaps = 38/283 (13%)
Query: 36 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDL 92
P LPGP P G P G A + P P GPS AP PG A L
Sbjct: 69 PGLPGPRGLPGDKGVDGLPGQQGLRGAKGVTLPCIIPGSYGPSGFPGAPGFPGSKGARGL 128
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
PG P G P PG P PG P G P PG PG + +
Sbjct: 129 PGIPGKPGTHGSKGEPGSPGLIHLPGFPG---FPGARGEKGLPGFPGLLGKHGYPGKAGS 185
Query: 153 PDLPGPSS-APDL----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
P +PG A D+ G S L G PG S P G S + GP
Sbjct: 186 PGVPGSKGVAGDIFGAENGASGEQGLQGLPGDKGFPGDSGLPGPKGLSGKSGMLGPKGER 245
Query: 208 DLP------------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
P G LPG AP LPG S P G PG +
Sbjct: 246 GNPGTSGPPGQPGPSGSTDPFGIKGTSGLPG---APGLPGISGHPGKKGQRGDIGHPGST 302
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG LPGP L G +P L G + P +PG
Sbjct: 303 GKRGLPG---IKGLPGPQG---LAGFLGSPGLSGVTGLPGIPG 339
>gi|326918160|ref|XP_003205359.1| PREDICTED: hypothetical protein LOC100539194 [Meleagris gallopavo]
Length = 1584
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 63/210 (30%), Gaps = 22/210 (10%)
Query: 57 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 116
PGP GP G S + LPGP G + G +P LPG
Sbjct: 477 PGPKGDRGSIGPEGPKGQKGESGSQGLPGPRGEKGESGRAYGRGEKGEKGSPGLPGTPGK 536
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
G + P PG A LPGP+ G P + G AP L G G
Sbjct: 537 DGAKGEAGEPGQPG---AFGLPGPAGPKGSEGKQGPPGIKGYIGAPGLQGERGEKGTRGD 593
Query: 177 SSAPDLPGPSSAPDLPGPSS-------------------APDLPGPSSAPDLPGPSSAPD 217
L G P + G L G P GP P
Sbjct: 594 KGERGLDGFPGKPGVEGKQGPAGSPGPPGGSGPKGEKVPTEGLKGEQGEPGPRGPQGQPG 653
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
LPG L G AP LPG PG
Sbjct: 654 LPGLPGEAGLEGKPGAPGLPGQRGKKGEPG 683
>gi|165881922|gb|ABY71227.1| Col1a1 [Scyliorhinus canicula]
Length = 1237
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 83/229 (36%), Gaps = 15/229 (6%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EP GP+ PG + + G A PG S AP PGP GPS A G
Sbjct: 149 EPGAAGPAGPTGAPGNAGSDGQAGAKGATGAPGMSGAPGFPGPR------GPSGAQGAVG 202
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
PS G AP G + PG LPGP+ G A PG P
Sbjct: 203 PSGPKGNTGEGGAPGSKGETGTKGEPGSVGVQGLPGPAGE---EGKRGARGEPGAQGLPG 259
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
+ G P G + L GP P GP L G + P PG + P G +
Sbjct: 260 VSGERGGPGNRGFPGSEGLIGPKGVPGERGPGGPLGLKGATGEPGRPGEAGLPGARGLTG 319
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSA 251
+P PG P GP+ GP P GP P + PGP A
Sbjct: 320 SPGSPGADGKPGPAGPTGQDGRAGP---PGSAGPRGQPGVMGFPGPKGA 365
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 82/228 (35%), Gaps = 15/228 (6%)
Query: 63 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 122
P GP+ PG + + G A PG S AP PGP GPS A GP
Sbjct: 150 PGAAGPAGPTGAPGNAGSDGQAGAKGATGAPGMSGAPGFPGPR------GPSGAQGAVGP 203
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
S G AP G + PG LPGP+ G A PG P +
Sbjct: 204 SGPKGNTGEGGAPGSKGETGTKGEPGSVGVQGLPGPAGE---EGKRGARGEPGAQGLPGV 260
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
G P G + L GP P GP L G + P PG + P G + +
Sbjct: 261 SGERGGPGNRGFPGSEGLIGPKGVPGERGPGGPLGLKGATGEPGRPGEAGLPGARGLTGS 320
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSA 287
P PG P GP+ GP P GP P + PGP A
Sbjct: 321 PGSPGADGKPGPAGPTGQDGRAGP---PGSAGPRGQPGVMGFPGPKGA 365
>gi|224044919|ref|XP_002196734.1| PREDICTED: collagen alpha-2(I) chain [Taeniopygia guttata]
Length = 1364
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 66/171 (38%), Gaps = 18/171 (10%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 121
LPG LPG S A PGP S P GPS PGP+ AP G P G
Sbjct: 874 LPGSRGERGLPGISGATGEPGPLGVSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDG 933
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSS 178
P PG AP G AP PGPS A PGP GPS P PGP+
Sbjct: 934 P------PGRDGAPGFKGERGAPGSPGPSGALGAPGPHG---QVGPSGKPGNRGEPGPAG 984
Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
A G L GP A G P GP P L G + LPG
Sbjct: 985 AVGPAGAFGPRGLAGPQGA---RGEKGLPGDKGPRGLPGLKGHNGLQGLPG 1032
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 66/171 (38%), Gaps = 18/171 (10%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
LPG LPG S A PGP S P GPS PGP+ AP G P G
Sbjct: 874 LPGSRGERGLPGISGATGEPGPLGVSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDG 933
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSS 223
P PG AP G AP PGPS A PGP GPS P PGP+
Sbjct: 934 P------PGRDGAPGFKGERGAPGSPGPSGALGAPGPHG---QVGPSGKPGNRGEPGPAG 984
Query: 224 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
A G L GP A G P GP P L G + LPG
Sbjct: 985 AVGPAGAFGPRGLAGPQGA---RGEKGLPGDKGPRGLPGLKGHNGLQGLPG 1032
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 67/181 (37%), Gaps = 20/181 (11%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E + GP A PG P G L G P PG P PG + P
Sbjct: 151 RPGERGVAGPQGARGFPGTPGLPGFKGIRGHNGLDGQKGQPGTPGTKGEPGAPGENGTPG 210
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GP--------------SSAPD 127
PG A LPG PGP+ A G S+ P P GP +
Sbjct: 211 QPG---ARGLPGERGRVGAPGPAGARGSDG-SAGPTGPAGPIGAAGPPGFPGAPGAKGEI 266
Query: 128 LPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
P + P P GP LPG S PG A LPG A LPG + AP LPGP
Sbjct: 267 GPAGNVGPSGPAGPRGEIGLPGSSGPVGPPGNPGANGLPGAKGAAGLPGVAGAPGLPGPR 326
Query: 187 S 187
Sbjct: 327 G 327
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 64/165 (38%), Gaps = 15/165 (9%)
Query: 137 LPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 191
LPG LPG S A PGP S P GPS PGP+ AP G P
Sbjct: 874 LPGSRGERGLPGISGATGEPGPLGVSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDG 933
Query: 192 -PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPG 247
PG AP G AP PGPS A PGP GPS P PGP+ A G
Sbjct: 934 PPGRDGAPGFKGERGAPGSPGPSGALGAPGPHG---QVGPSGKPGNRGEPGPAGAVGPAG 990
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
L GP A G P GP P L G + LPG
Sbjct: 991 AFGPRGLAGPQGA---RGEKGLPGDKGPRGLPGLKGHNGLQGLPG 1032
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 209 LPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 263
LPG LPG S A PGP S P GPS PGP+ AP G P
Sbjct: 874 LPGSRGERGLPGISGATGEPGPLGVSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDG 933
Query: 264 -PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
PG AP G AP PGPS A PGP V
Sbjct: 934 PPGRDGAPGFKGERGAPGSPGPSGALGAPGPHGQV 968
>gi|402579784|gb|EJW73735.1| collagen alpha-5(IV) chain, partial [Wuchereria bancrofti]
Length = 354
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 93/287 (32%), Gaps = 57/287 (19%)
Query: 17 PSTVTERPLE--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 74
P ER + P LPG AP PG PG P +PG G
Sbjct: 94 PGVKGERGIAGLPGLPGLKGAPGYPG------APGKDGIPGIPGEKGERGFNGLPGEKGE 147
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
PGP++ G + P PG PG P + G P AP LPG
Sbjct: 148 PGPAAIDGAKGEAGLPGAPGLRGPQGPPGLPGLPGIKGEDGKPGY----GAPGLPGEKGI 203
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------------PSSAPDLPGPSSA 179
P LPG P AP L G AP PG AP LPG
Sbjct: 204 PGLPGKQGRP------GAPGLKGLDGAPGFPGLKGEPGLPGLPGLPGQVGAPGLPGQKGN 257
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
PG + P AP LPG P + G +P +PG L G LPG
Sbjct: 258 AGFPGQAGLP------GAPGLPGKMGVPGIRGDKGSPGIPGAHGERGLDG------LPGQ 305
Query: 240 SSAPDLPGPS------------SAPDLPGPSSAPDLPGPSSAPDLPG 274
P PG P PG P PG P LPG
Sbjct: 306 KGEPGYPGLQGPIGPPGPKGNVGVPGYPGIKGLPGFPGKDGLPGLPG 352
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 92/278 (33%), Gaps = 46/278 (16%)
Query: 51 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 110
+ P LPG G + P LPG AP PG PG P +PG
Sbjct: 85 AGLPGLPGAPGVKGERGIAGLPGLPGLKGAPGYPG------APGKDGIPGIPGEKGERGF 138
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
G PGP++ G + P PG PG P + G P A
Sbjct: 139 NGLPGEKGEPGPAAIDGAKGEAGLPGAPGLRGPQGPPGLPGLPGIKGEDGKPGY----GA 194
Query: 171 PDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPG---------------PSSAPDLPGP 212
P LPG P LPG AP L G AP PG AP LPG
Sbjct: 195 PGLPGEKGIPGLPGKQGRPGAPGLKGLDGAPGFPGLKGEPGLPGLPGLPGQVGAPGLPGQ 254
Query: 213 SSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGP 266
PG + AP LPG P + G +P +PG LPG P PG
Sbjct: 255 KGNAGFPGQAGLPGAPGLPGKMGVPGIRGDKGSPGIPGAHGERGLDGLPGQKGEPGYPGL 314
Query: 267 S------------SAPDLPGPSSAPDLPGPSSAPDLPG 292
P PG P PG P LPG
Sbjct: 315 QGPIGPPGPKGNVGVPGYPGIKGLPGFPGKDGLPGLPG 352
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 98/284 (34%), Gaps = 31/284 (10%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG + P PG LPG L G P +PG A PG GP
Sbjct: 19 PGIAGLPGFPGQKGEDGLPGLPGVAGLKGDVGLPGIPGLPGADGKPGFPGLKGQGGPPGP 78
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
P G + P LPG G + P LPG AP PG PG P +PG
Sbjct: 79 PGSKGDAGLPGLPGAPGVKGERGIAGLPGLPGLKGAPGYPG------APGKDGIPGIPGE 132
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
G PGP++ G + P PG PG P + G P
Sbjct: 133 KGERGFNGLPGEKGEPGPAAIDGAKGEAGLPGAPGLRGPQGPPGLPGLPGIKGEDGKPGY 192
Query: 210 PGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPG---------------PSSA 251
AP LPG P LPG AP L G AP PG A
Sbjct: 193 ----GAPGLPGEKGIPGLPGKQGRPGAPGLKGLDGAPGFPGLKGEPGLPGLPGLPGQVGA 248
Query: 252 PDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPG 292
P LPG PG + AP LPG P + G +P +PG
Sbjct: 249 PGLPGQKGNAGFPGQAGLPGAPGLPGKMGVPGIRGDKGSPGIPG 292
>gi|348541185|ref|XP_003458067.1| PREDICTED: collagen alpha-1(XI) chain-like [Oreochromis niloticus]
Length = 1811
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 81/241 (33%), Gaps = 24/241 (9%)
Query: 38 LPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 94
+PGP A P GP+ P LPG +PG P PG P G + P+ G
Sbjct: 694 MPGPQGAIGPPGEKGPTGKPGLPG------MPGADGPPGHPGKEGPPGTKG-NQGPN--G 744
Query: 95 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 154
P A PGP G G PG + G + GP
Sbjct: 745 PQGAIGYPGPRGVKGEQGIRGLKGHKGEKGEDGFPGIKGDFGVKGERGEIGVSGPRGEDG 804
Query: 155 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 214
GP PG A L G +PG P GP + PG PG +
Sbjct: 805 PEGPKGRVGPPGEVGAIGLIGEKGKLGVPGVPGYPGRQGPKGSLGFPG------FPGSNG 858
Query: 215 APDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGP--SSAPDLP-GPSSAPDLPGPSS 268
GPS P GP+ GP A PG +S D P GP LPGP
Sbjct: 859 EKGTRGPSGKPGPRGQRGPTGPRGQRGPRGATGKPGAKGTSGSDGPHGPPGERGLPGPQG 918
Query: 269 A 269
A
Sbjct: 919 A 919
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 79/234 (33%), Gaps = 21/234 (8%)
Query: 74 LPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
+PGP A P GP+ P LPG +PG P PG P G + P+ G
Sbjct: 694 MPGPQGAIGPPGEKGPTGKPGLPG------MPGADGPPGHPGKEGPPGTKG-NQGPN--G 744
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
P A PGP G G PG + G + GP
Sbjct: 745 PQGAIGYPGPRGVKGEQGIRGLKGHKGEKGEDGFPGIKGDFGVKGERGEIGVSGPRGEDG 804
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPG 247
GP PG A L G +PG P GP + P PG + G
Sbjct: 805 PEGPKGRVGPPGEVGAIGLIGEKGKLGVPGVPGYPGRQGPKGSLGFPGFPGSNGEKGTRG 864
Query: 248 PSSAP---DLPGPSSAPDLPGPSSAPDLPGP--SSAPDLP-GPSSAPDLPGPSS 295
PS P GP+ GP A PG +S D P GP LPGP
Sbjct: 865 PSGKPGPRGQRGPTGPRGQRGPRGATGKPGAKGTSGSDGPHGPPGERGLPGPQG 918
>gi|297259408|ref|XP_001114798.2| PREDICTED: hypothetical protein LOC719943 [Macaca mulatta]
Length = 877
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
GP PGP P + GPS P +PG +PG G S AP GP+
Sbjct: 487 FRGPKGDLGRPGPKGIPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRSGAPGEKGPNG 546
Query: 107 APDLPGPSSAPDLPGPS-SAPDL--PGPSSAPDLPGPSSAPDLPGPSS 151
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 547 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 594
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
GP PGP P + GPS P +PG +PG G S AP GP+
Sbjct: 487 FRGPKGDLGRPGPKGIPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRSGAPGEKGPNG 546
Query: 179 APDLPGPSSAPDLPGPS-SAPDL--PGPSSAPDLPGPSSAPDLPGPSS 223
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 547 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 594
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 223
GP PGP P + GPS P +PG +PG G S AP GP+
Sbjct: 487 FRGPKGDLGRPGPKGIPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRSGAPGEKGPNG 546
Query: 224 APDLPGPSSAPDLPGPS-SAPDL--PGPSSAPDLPGPSSAPDLPGPSS 268
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 547 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 594
>gi|297467556|ref|XP_601325.5| PREDICTED: collagen alpha-1(IX) chain, partial [Bos taurus]
Length = 1021
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 75/228 (32%), Gaps = 17/228 (7%)
Query: 50 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 109
P+S P PG S P LPG G P G G GP A
Sbjct: 759 PNSCP--PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGGLGEVGAQGPPGAQG 816
Query: 110 LPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
L G + G A L PGP P PG PG GP +P +PG
Sbjct: 817 LRGITGVAGEKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEIGPKGDRGPQGSPGIPG 876
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 226
LPGP LPG +PG +PG P PGP L G P
Sbjct: 877 ------LPGPKGDTGLPGVDGRDGIPG------MPGTKGEPGKPGPPGEAGLQGLPGIPG 924
Query: 227 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
LPG G + AP PG PG P GP L G
Sbjct: 925 LPGAKGVAGEKGNTGAPGKPGQLGNSGKPGRQGPPGEVGPRGPRGLSG 972
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 71/221 (32%), Gaps = 15/221 (6%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG S P LPG G P G G GP A L G +
Sbjct: 764 PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGGLGEVGAQGPPGAQGLRGITGV 823
Query: 90 PDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
G A L PGP P PG PG GP +P +PG L
Sbjct: 824 AGEKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEIGPKGDRGPQGSPGIPG------L 877
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
PGP LPG +PG +PG P PGP L G P LPG
Sbjct: 878 PGPKGDTGLPGVDGRDGIPG------MPGTKGEPGKPGPPGEAGLQGLPGIPGLPGAKGV 931
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
G + AP PG PG P GP L G
Sbjct: 932 AGEKGNTGAPGKPGQLGNSGKPGRQGPPGEVGPRGPRGLSG 972
>gi|338718497|ref|XP_001918214.2| PREDICTED: collagen alpha-1(IX) chain-like [Equus caballus]
Length = 1050
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 74/222 (33%), Gaps = 14/222 (6%)
Query: 50 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSS 106
P+S P PG S P +PG G P G PG + A PG
Sbjct: 514 PNSCP--PGRSGYPGIPGMRGHKGAKGEIGEPGRQGHKGEEGDQGEPGEAGAQGPPGAQG 571
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPD 163
+ G + A G PGP P PG P GP +PG P
Sbjct: 572 LRGITGIAGAKGEKGARGFDGEPGPQGLPGAPGDQGQRGPPGEAGPKGERGVPGSRGIPG 631
Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 223
LPG LPG +PG +PG P PGP L G P +PG
Sbjct: 632 LPGSKGDTGLPGVDGRDGIPG------MPGTKGEPGKPGPPGDVGLQGLPGVPGIPGAKG 685
Query: 224 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
G + AP PG PG P GP LPG
Sbjct: 686 VAGEKGNTGAPGKPGQLGNSGKPGQQGPPGEVGPRGPRGLPG 727
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 74/222 (33%), Gaps = 14/222 (6%)
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSS 133
P+S P PG S P +PG G P G PG + A PG
Sbjct: 514 PNSCP--PGRSGYPGIPGMRGHKGAKGEIGEPGRQGHKGEEGDQGEPGEAGAQGPPGAQG 571
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPD 190
+ G + A G PGP P PG P GP +PG P
Sbjct: 572 LRGITGIAGAKGEKGARGFDGEPGPQGLPGAPGDQGQRGPPGEAGPKGERGVPGSRGIPG 631
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
LPG LPG +PG +PG P PGP L G P +PG
Sbjct: 632 LPGSKGDTGLPGVDGRDGIPG------MPGTKGEPGKPGPPGDVGLQGLPGVPGIPGAKG 685
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G + AP PG PG P GP LPG
Sbjct: 686 VAGEKGNTGAPGKPGQLGNSGKPGQQGPPGEVGPRGPRGLPG 727
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 70/215 (32%), Gaps = 12/215 (5%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGP 86
PG S P +PG G P G PG + A PG + G
Sbjct: 519 PGRSGYPGIPGMRGHKGAKGEIGEPGRQGHKGEEGDQGEPGEAGAQGPPGAQGLRGITGI 578
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 143
+ A G PGP P PG P GP +PG P LPG
Sbjct: 579 AGAKGEKGARGFDGEPGPQGLPGAPGDQGQRGPPGEAGPKGERGVPGSRGIPGLPGSKGD 638
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
LPG +PG +PG P PGP L G P +PG G
Sbjct: 639 TGLPGVDGRDGIPG------MPGTKGEPGKPGPPGDVGLQGLPGVPGIPGAKGVAGEKGN 692
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
+ AP PG PG P GP LPG
Sbjct: 693 TGAPGKPGQLGNSGKPGQQGPPGEVGPRGPRGLPG 727
>gi|428172413|gb|EKX41322.1| hypothetical protein GUITHDRAFT_112533 [Guillardia theta CCMP2712]
Length = 1003
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
GP P + GP A PG P PGP+ LPGP+ AP G PG + A
Sbjct: 347 GPHGLPGIAGPQGAMGAPG---IPGQPGPAGLNGLPGPAGAPGTQGA------PGLNGAG 397
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 121
+PG AP PG S AP G +P PG
Sbjct: 398 GVPGAHGAPGAPGVSGAPGSNGAHGSPGSPG 428
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 49 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 108
GP P + GP A PG P PGP+ LPGP+ AP G PG + A
Sbjct: 347 GPHGLPGIAGPQGAMGAPG---IPGQPGPAGLNGLPGPAGAPGTQGA------PGLNGAG 397
Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+PG AP PG S AP G +P PG
Sbjct: 398 GVPGAHGAPGAPGVSGAPGSNGAHGSPGSPG 428
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
GP P + GP A PG P PGP+ LPGP+ AP G PG + A
Sbjct: 347 GPHGLPGIAGPQGAMGAPG---IPGQPGPAGLNGLPGPAGAPGTQGA------PGLNGAG 397
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
+PG AP PG S AP G +P PG
Sbjct: 398 GVPGAHGAPGAPGVSGAPGSNGAHGSPGSPG 428
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
GP P + GP A PG P PGP+ LPGP+ AP G PG + A
Sbjct: 347 GPHGLPGIAGPQGAMGAPG---IPGQPGPAGLNGLPGPAGAPGTQGA------PGLNGAG 397
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+PG AP PG S AP G +P PG
Sbjct: 398 GVPGAHGAPGAPGVSGAPGSNGAHGSPGSPG 428
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
GP P + GP A PG P PGP+ LPGP+ AP G PG + A
Sbjct: 347 GPHGLPGIAGPQGAMGAPG---IPGQPGPAGLNGLPGPAGAPGTQGA------PGLNGAG 397
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
+PG AP PG S AP G +P PG
Sbjct: 398 GVPGAHGAPGAPGVSGAPGSNGAHGSPGSPG 428
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
GP P + GP A PG P PGP+ LPGP+ AP G PG + A
Sbjct: 347 GPHGLPGIAGPQGAMGAPG---IPGQPGPAGLNGLPGPAGAPGTQGA------PGLNGAG 397
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
+PG AP PG S AP G +P PG
Sbjct: 398 GVPGAHGAPGAPGVSGAPGSNGAHGSPGSPG 428
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
GP P + GP A PG P PGP+ LPGP+ AP G PG + A
Sbjct: 347 GPHGLPGIAGPQGAMGAPG---IPGQPGPAGLNGLPGPAGAPGTQGA------PGLNGAG 397
Query: 253 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
+PG AP PG S AP G +P PG
Sbjct: 398 GVPGAHGAPGAPGVSGAPGSNGAHGSPGSPG 428
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPS 267
GP P + GP A PG P PGP+ LPGP+ AP PG + A +PG
Sbjct: 347 GPHGLPGIAGPQGAMGAPG---IPGQPGPAGLNGLPGPAGAPGTQGAPGLNGAGGVPGAH 403
Query: 268 SAPDLPGPSSAPDLPGPSSAPDLPG 292
AP PG S AP G +P PG
Sbjct: 404 GAPGAPGVSGAPGSNGAHGSPGSPG 428
>gi|440910626|gb|ELR60401.1| Collagen alpha-4(IV) chain, partial [Bos grunniens mutus]
Length = 1652
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 98/301 (32%), Gaps = 46/301 (15%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSA-----PDLPGPSSAPDLPGP-----SSAPDLPGPS 69
++ERP P G P L G + P PG GP P LPG S
Sbjct: 675 ISERPGPPGFRGDIGEPGLGGEKGSSPVGPPGSPGSLGVNGQKGPPGDPAIGYPGLPGKS 734
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------------PS 114
P PG + L G + P GP+ P PG G
Sbjct: 735 GLPGAPG---SKGLRGDAGRPGTAGPAGMPGFPGLQGPKGREGNAGFPGIPGPPGHSCER 791
Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
AP +PG P PG AP G GP+ LPG P PG P LP
Sbjct: 792 GAPGIPGQPGLPGAPGSPGAPGWKGQRGDMGPLGPAGMKGLPG---VPGWPGADGTPGLP 848
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPS 231
G +PGP+ LPG LPGP LPG P PG P G
Sbjct: 849 G------VPGPTGDDGLPG------LPGPKGPQGLPGFLGFPGERGKPGQDGHPGRKGEH 896
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
PG L G A PG D+ PGPS PG + P
Sbjct: 897 GEKGWPGFLGDRGLKGVKGARGPPGYEGETDIISKKGETGEPGPSGDGGFPGENGDKGHP 956
Query: 292 G 292
G
Sbjct: 957 G 957
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 81/251 (32%), Gaps = 33/251 (13%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------------P 68
P + LPG + L G + P GP+ P PG G
Sbjct: 731 PGKSGLPGAPGSKGLRGDAGRPGTAGPAGMPGFPGLQGPKGREGNAGFPGIPGPPGHSCE 790
Query: 69 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 128
AP +PG P PG AP G GP+ LPG P PG P L
Sbjct: 791 RGAPGIPGQPGLPGAPGSPGAPGWKGQRGDMGPLGPAGMKGLPG---VPGWPGADGTPGL 847
Query: 129 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGP 185
PG +PGP+ LPG LPGP LPG P PG P G
Sbjct: 848 PG------VPGPTGDDGLPG------LPGPKGPQGLPGFLGFPGERGKPGQDGHPGRKGE 895
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
PG L G A PG D+ PGPS PG +
Sbjct: 896 HGEKGWPGFLGDRGLKGVKGARGPPGYEGETDIISKKGETGEPGPSGDGGFPGENGDKGH 955
Query: 246 PGPSSAPDLPG 256
PG PG
Sbjct: 956 PGMQGRRGEPG 966
>gi|354494325|ref|XP_003509288.1| PREDICTED: collagen alpha-2(IV) chain, partial [Cricetulus griseus]
Length = 1262
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 118/343 (34%), Gaps = 55/343 (16%)
Query: 29 LPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLP 84
L G P +PG + P LPG P + G P PG P + PG + P
Sbjct: 557 LKGIQGMPGVPGLAGIPGLPGRPGYIKGVKGDIGVPGTPGLPGQPGVVGTPGITGFPGFI 616
Query: 85 GPSSAPDLPGPSS----------------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 128
G PG + DLPG +P L G +PG
Sbjct: 617 GSRGEKGAPGRAGLFGEIGLTGDFGDIGDTVDLPG---SPGLKGERGVTGIPGLKGILGE 673
Query: 129 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
G PG + + GP +P L G + P L G PG S P G
Sbjct: 674 KGTEGEVGFPGITG---MAGPQGSPGLKGQTGFPGLTGLQGPQGDPGRSGVPGDKGDYGW 730
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSS-------APDLPGP 239
P + G P + G S LPG P PG P PGP+ A LPGP
Sbjct: 731 PGVSGLPGFPGIRGISGLHGLPGTKGFPGSPGADVHGDPGFPGPAGDRGDRGEANTLPGP 790
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPG---------- 283
A G P GP+ +P L G S+ PG AP + G
Sbjct: 791 VGAAGQKGERGTPGERGPAGSPGLQGFPGISPLSNISGSPGDVGAPGIFGSEGYRGPPGP 850
Query: 284 --PSSAPDLPGPSSTVLGSYL-GEAGHQKSPKGLEPKPAQISF 323
P++ P + G +V + G+ G P GL+ +P +
Sbjct: 851 PGPNALPGIKGDEGSVGAAGFPGQKGWVGDP-GLQGQPGVVGL 892
>gi|335279173|ref|XP_003121321.2| PREDICTED: collagen alpha-1(IX) chain [Sus scrofa]
Length = 922
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 72/222 (32%), Gaps = 14/222 (6%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 91
P+S P PG S P LPG G P G G GP A
Sbjct: 412 PNSCP--PGRSGYPGLPGMRGHKGAKGEVGEPGRQGHKGEEGDQGEPGEVGAQGPPGAQG 469
Query: 92 LPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPD 145
L G + G A L PGP P PG P GP G P
Sbjct: 470 LRGITGIAGAKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEIGPKGDRGAQGSRGIPG 529
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
LPGP LPG +PG +PG P PGP L G P +PG
Sbjct: 530 LPGPKGDTGLPGVDGREGIPG------MPGTKGEPGKPGPPGEAGLQGLPGIPGIPGAKG 583
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
G + AP PG PG P GP LPG
Sbjct: 584 VAGEKGNTGAPGKPGQLGNSGKPGQQGPPGEVGPRGPRGLPG 625
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 72/222 (32%), Gaps = 14/222 (6%)
Query: 50 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 109
P+S P PG S P LPG G P G G GP A
Sbjct: 412 PNSCP--PGRSGYPGLPGMRGHKGAKGEVGEPGRQGHKGEEGDQGEPGEVGAQGPPGAQG 469
Query: 110 LPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPD 163
L G + G A L PGP P PG P GP G P
Sbjct: 470 LRGITGIAGAKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEIGPKGDRGAQGSRGIPG 529
Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 223
LPGP LPG +PG +PG P PGP L G P +PG
Sbjct: 530 LPGPKGDTGLPGVDGREGIPG------MPGTKGEPGKPGPPGEAGLQGLPGIPGIPGAKG 583
Query: 224 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
G + AP PG PG P GP LPG
Sbjct: 584 VAGEKGNTGAPGKPGQLGNSGKPGQQGPPGEVGPRGPRGLPG 625
>gi|242023316|ref|XP_002432080.1| trypsin, putative [Pediculus humanus corporis]
gi|212517454|gb|EEB19342.1| trypsin, putative [Pediculus humanus corporis]
Length = 1937
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 100/284 (35%), Gaps = 62/284 (21%)
Query: 17 PSTVTERPL-EPDLPGPSSAPDLPG-----------------PSSAPDLPGPSSAPDLPG 58
PST P +P PG S P PG P PG S P PG
Sbjct: 167 PSTSASSPFGQPGFPGSGSKPGFPGSPGQPGYGGQPGFPGSGSGGQPGFPGSSGQPGSPG 226
Query: 59 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-----PDLPGP 113
P PG S P PG P PG S P PG P PG S+ P PG
Sbjct: 227 ---QPGFPGSSGQPGSPG---QPGFPGSSGQPGSPG---RPGYPGSGSSGQPGFPGSPGQ 277
Query: 114 SSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA--PDLP 165
+ PG P PG P PG S P PG P PG S+ P P
Sbjct: 278 AGHGGQPGSPGQPGFPGSPGQPGYGGQPGFPGSSGQPGSPG---RPGYPGSGSSGQPGFP 334
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA--PDLPGPSS 223
G P G +P PG PG S P PG P PG S+ P PG S
Sbjct: 335 GSPGQPGHGGQPGSPGQPG------FPGSSGQPGSPG---RPGYPGSGSSGQPGFPGSSG 385
Query: 224 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA--PDLPG 265
P PG S PG S P PG P PG S P PG
Sbjct: 386 QPGSPGQS---GFPGSSGQPGSPG---RPGYPGSGSTGQPGFPG 423
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 94/270 (34%), Gaps = 59/270 (21%)
Query: 59 PSSAPDLPGPSSAPDLPG-----------------PSSAPDLPGPSSAPDLPGPSSAPDL 101
P P PG S P PG P PG S P PG P
Sbjct: 174 PFGQPGFPGSGSKPGFPGSPGQPGYGGQPGFPGSGSGGQPGFPGSSGQPGSPG---QPGF 230
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-----PDLPGPSSAPDLP 156
PG S P PG P PG S P PG P PG S+ P PG + P
Sbjct: 231 PGSSGQPGSPG---QPGFPGSSGQPGSPG---RPGYPGSGSSGQPGFPGSPGQAGHGGQP 284
Query: 157 GPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA--PDLPGPSSAPD 208
G P PG P PG S P PG P PG S+ P PG P
Sbjct: 285 GSPGQPGFPGSPGQPGYGGQPGFPGSSGQPGSPG---RPGYPGSGSSGQPGFPGSPGQPG 341
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA--PDLPGPSSAPDLPGP 266
G +P PG PG S P PG P PG S+ P PG S P PG
Sbjct: 342 HGGQPGSPGQPG------FPGSSGQPGSPG---RPGYPGSGSSGQPGFPGSSGQPGSPGQ 392
Query: 267 SSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
S PG S P PG P PG ST
Sbjct: 393 S---GFPGSSGQPGSPG---RPGYPGSGST 416
>gi|56754945|gb|AAW25655.1| SJCHGC09298 protein [Schistosoma japonicum]
Length = 694
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 80/221 (36%), Gaps = 18/221 (8%)
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
G + P L GP+ + +PG LPGPS G S P GP GPS AP
Sbjct: 68 GEAGDPGLEGPAGSDGMPG------LPGPSGDKGERGDSGLPGTVGPIGPDGDQGPSGAP 121
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
GP+ P G P GP LPG + P PG GP GP
Sbjct: 122 GKIGPTGPP---GNVGKPGEMGPPGNAGLPGRTGLPGPPGKDGQVGKQGPRGEEGPRGPD 178
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
P + GP + + GP P GP + GP PGP P G P P
Sbjct: 179 GNPGMQGPPGSSGVKGP---PGSRGPIGPTGIRGPPGLVGQPGP---PGKQGSQGRPGKP 232
Query: 247 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 287
GP GP LPG AP GP PG A
Sbjct: 233 GPDGFEGKRGPPGEMGLPG---APGSKGPMGDEGEPGSRGA 270
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 77/211 (36%), Gaps = 15/211 (7%)
Query: 26 EPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P L GP+ + P LPGPS G S P GP GPS AP GP+ P
Sbjct: 72 DPGLEGPAGSDGMPGLPGPSGDKGERGDSGLPGTVGPIGPDGDQGPSGAPGKIGPTGPP- 130
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
G P GP LPG + P PG GP GP P + GP
Sbjct: 131 --GNVGKPGEMGPPGNAGLPGRTGLPGPPGKDGQVGKQGPRGEEGPRGPDGNPGMQGPPG 188
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+ + GP P GP + GP PGP P G P PGP G
Sbjct: 189 SSGVKGP---PGSRGPIGPTGIRGPPGLVGQPGP---PGKQGSQGRPGKPGPDGFEGKRG 242
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 233
P LPG AP GP PG A
Sbjct: 243 PPGEMGLPG---APGSKGPMGDEGEPGSRGA 270
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 71/193 (36%), Gaps = 12/193 (6%)
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
G + P L GP+ + +PG LPGPS G S P GP GPS AP
Sbjct: 68 GEAGDPGLEGPAGSDGMPG------LPGPSGDKGERGDSGLPGTVGPIGPDGDQGPSGAP 121
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 222
GP+ P G P GP LPG + P PG GP GP
Sbjct: 122 GKIGPTGPP---GNVGKPGEMGPPGNAGLPGRTGLPGPPGKDGQVGKQGPRGEEGPRGPD 178
Query: 223 SAPDLPGPSSAPDLPGP--SSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 279
P + GP + + GP S P P G P L G P G P PGP
Sbjct: 179 GNPGMQGPPGSSGVKGPPGSRGPIGPTGIRGPPGLVGQPGPPGKQGSQGRPGKPGPDGFE 238
Query: 280 DLPGPSSAPDLPG 292
GP LPG
Sbjct: 239 GKRGPPGEMGLPG 251
>gi|332243962|ref|XP_003271139.1| PREDICTED: collagen alpha-1(IX) chain isoform 2 [Nomascus
leucogenys]
Length = 921
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 77/233 (33%), Gaps = 15/233 (6%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG S P LPG G P G G GP A L G +
Sbjct: 417 PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGI 476
Query: 90 PDLPGPSSAPDL---PGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G A L PGP P PG P GP G P PGP
Sbjct: 477 VGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGFPGPKGD 536
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
LPG + G P +PG P PGP L G P +PG G
Sbjct: 537 TGLPG------MDGRDGIPGMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGS 590
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ AP PG PG P GP LPG S +L GP +P LPG
Sbjct: 591 TGAPGKPGQMGNSGKPGQQGPPGEVGPRGPRGLPG--SRGEL-GPVGSPGLPG 640
>gi|351712348|gb|EHB15267.1| Collagen alpha-1(X) chain [Heterocephalus glaber]
Length = 683
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 58/150 (38%), Gaps = 10/150 (6%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P PG P +PG P +PG + P PG P LPG L G LPG
Sbjct: 265 KPGAPGTPGQPGIPGTKGQPGIPGIAGHPGAPG-FGKPGLPG------LKGQRGPAGLPG 317
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
A GP+ P PG +P GP +PG +PGP GP+ P
Sbjct: 318 SPGAKGEQGPAGHPGEPGLPGSPGSVGPQGPKGIPGNHG---IPGPKGETGPIGPAGHPG 374
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
G +P L G P G S A PG
Sbjct: 375 ARGAKGSPGLEGKPGYPGEAGLSGAQGNPG 404
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 56/143 (39%), Gaps = 10/143 (6%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +P +PG P +PG + P PG P LPG L G LPG A
Sbjct: 272 PGQPGIPGTKGQPGIPGIAGHPGAPG-FGKPGLPG------LKGQRGPAGLPGSPGAKGE 324
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
GP+ P PG +P GP +PG +PGP GP+ P G +
Sbjct: 325 QGPAGHPGEPGLPGSPGSVGPQGPKGIPGNHG---IPGPKGETGPIGPAGHPGARGAKGS 381
Query: 144 PDLPGPSSAPDLPGPSSAPDLPG 166
P L G P G S A PG
Sbjct: 382 PGLEGKPGYPGEAGLSGAQGNPG 404
>gi|327277390|ref|XP_003223448.1| PREDICTED: collagen alpha-6(IV) chain-like [Anolis carolinensis]
Length = 1651
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 52/140 (37%), Gaps = 8/140 (5%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
+PG P PG S P G P +PG + GP P L G P PG
Sbjct: 619 IPGAFGPPGFPGASGFPGRKGSKGLPGIPGQPGFNGIKGPMGTPGLIGLLGMPGFPGIRG 678
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDL 182
P + GP PGP PG P LPG P S A PG + +P
Sbjct: 679 DPGISGP------PGPDGTDGFPGKPGLPGLPGAKGPPGEVFGAESGARGEPGRTGSPGE 732
Query: 183 PGPSSAPDLPGPSSAPDLPG 202
G + P LPGP PG
Sbjct: 733 KGFAGDPGLPGPKGLDGRPG 752
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 52/140 (37%), Gaps = 8/140 (5%)
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
+PG P PG S P G P +PG + GP P L G P PG
Sbjct: 619 IPGAFGPPGFPGASGFPGRKGSKGLPGIPGQPGFNGIKGPMGTPGLIGLLGMPGFPGIRG 678
Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDL 236
P + GP PGP PG P LPG P S A PG + +P
Sbjct: 679 DPGISGP------PGPDGTDGFPGKPGLPGLPGAKGPPGEVFGAESGARGEPGRTGSPGE 732
Query: 237 PGPSSAPDLPGPSSAPDLPG 256
G + P LPGP PG
Sbjct: 733 KGFAGDPGLPGPKGLDGRPG 752
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 81/222 (36%), Gaps = 23/222 (10%)
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
PGP LPGP P PG + +P GP PG P PG + G
Sbjct: 942 FPGPRGDKGLPGPRGQPGFPGIAGSPSRAEGPPGDSGFPGSFGLPGFPGQEGITGIVG-- 999
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS----APDLPGPSSAPDLPGPSSA 197
P +PG S A +PG P + G L GP + +PG A G
Sbjct: 1000 -FPGMPGESGAEGIPGSPGFPGMMG------LRGPKGDRGDSIGIPGGVGAK---GEQGD 1049
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDL 254
P LPGP G P +PG +PG P LPG + PG P
Sbjct: 1050 PGLPGPRGFDGPKGDDEFPGIPGDKGQKGVPGNRGQEGPPGLPGIGISRGSPGLPGLPGQ 1109
Query: 255 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
G S P LPG +P L G + P L G P G T
Sbjct: 1110 RGSSGRPGLPG---SPGLKGFTGPPGLIGLYGLPGTKGSLGT 1148
>gi|189237743|ref|XP_971465.2| PREDICTED: similar to AGAP011620-PA [Tribolium castaneum]
Length = 1547
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 85/224 (37%), Gaps = 24/224 (10%)
Query: 45 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLP-GPSSAPDLPGPSSAPDL 101
P + G P L G PG P PGP S P P GP GP +P L
Sbjct: 345 PGVKGHRGFPGLDGIKGEQGPPGEKGIPGNPGPVGPSGPVGPSGPRGERGREGPQGSPGL 404
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
G + G + P LPG P PG P G +P GP + L GP
Sbjct: 405 RG------MDGIAGPPGLPGEMGKPGPPGFPGIPGAKGDHGSP---GPKGSQGLQGPR-- 453
Query: 162 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 221
G S P PG + P +PG +P G AP + GP P PG P + G
Sbjct: 454 ----GESGRPGQPGETGLPGIPGKDGSPGEKGNPGAPGISGP---PGFPGVRGLPGVNGS 506
Query: 222 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
P G + +P +PG G + A PGP P +PG
Sbjct: 507 PGQPGAKGNTGSPGVPGYKGESGAKGETGA---PGPRGLPGVPG 547
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 81/212 (38%), Gaps = 18/212 (8%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLP-GPSSAPDLPGPSSAPDL 83
P + G P L G PG P PGP S P P GP GP +P L
Sbjct: 345 PGVKGHRGFPGLDGIKGEQGPPGEKGIPGNPGPVGPSGPVGPSGPRGERGREGPQGSPGL 404
Query: 84 PGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDL 137
G P LPG P PG P G +P GP + L GP S P
Sbjct: 405 RGMDGIAGPPGLPGEMGKPGPPGFPGIPGAKGDHGSP---GPKGSQGLQGPRGESGRPGQ 461
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
PG + P +PG +P G AP + GP P PG P + G P G + +
Sbjct: 462 PGETGLPGIPGKDGSPGEKGNPGAPGISGP---PGFPGVRGLPGVNGSPGQPGAKGNTGS 518
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
P +PG G + AP GP P +PG
Sbjct: 519 PGVPGYKGESGAKGETGAP---GPRGLPGVPG 547
>gi|334349376|ref|XP_001378056.2| PREDICTED: collagen alpha-1(II) chain-like [Monodelphis domestica]
Length = 1078
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 94/257 (36%), Gaps = 12/257 (4%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P + L GP AP GPS L GP A PG P LPG PG +
Sbjct: 109 PGQDGLAGPKGAPGERGPSG---LGGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK 165
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
GPS AP G P G P + PGP A G + LPG LPG
Sbjct: 166 VGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEAGKAGEKGLPGAPGLRGLPGK 225
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
GP G PGPS LPGP +P G +PG + AP L
Sbjct: 226 DGETGAAGPPGPAGPVGERGEQGAPGPSGFQGLPGPPGSPGEGGKPGDQGVPGEAGAPGL 285
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
GP PG +P G A LPG P GP A GP+ A GP
Sbjct: 286 VGPRGERGFPGERGSPGAQGLQGARGLPG---TPGTDGPKGATGPAGPNGA---QGPPGL 339
Query: 261 PDLPGPSSAPDLPGPSS 277
+PG A + GP
Sbjct: 340 QGMPGERGAAGIAGPKG 356
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 91/275 (33%), Gaps = 33/275 (12%)
Query: 39 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 98
PG AP G L GP AP GPS L GP A PG P LPG
Sbjct: 97 PGERGAPGNRGFPGQDGLAGPKGAPGERGPSG---LGGPKGANGDPGRPGEPGLPGARGL 153
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 158
PG + GPS AP G P G P + G PGP A G
Sbjct: 154 TGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMG------FPGPKGANGEAGK 207
Query: 159 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------------ 206
+ LPG LPG GP G PGPS
Sbjct: 208 AGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPVGERGEQGAPGPSGFQGLPGPPGSPGE 267
Query: 207 ------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
+PG + AP L GP PG +P G A LPG P GP A
Sbjct: 268 GGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGARGLPG---TPGTDGPKGA 324
Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
GP+ A GP +PG A + GP
Sbjct: 325 TGPAGPNGA---QGPPGLQGMPGERGAAGIAGPKG 356
>gi|270007894|gb|EFA04342.1| hypothetical protein TcasGA2_TC014637 [Tribolium castaneum]
Length = 1545
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 85/224 (37%), Gaps = 24/224 (10%)
Query: 45 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLP-GPSSAPDLPGPSSAPDL 101
P + G P L G PG P PGP S P P GP GP +P L
Sbjct: 345 PGVKGHRGFPGLDGIKGEQGPPGEKGIPGNPGPVGPSGPVGPSGPRGERGREGPQGSPGL 404
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
G + G + P LPG P PG P G +P GP + L GP
Sbjct: 405 RG------MDGIAGPPGLPGEMGKPGPPGFPGIPGAKGDHGSP---GPKGSQGLQGPR-- 453
Query: 162 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 221
G S P PG + P +PG +P G AP + GP P PG P + G
Sbjct: 454 ----GESGRPGQPGETGLPGIPGKDGSPGEKGNPGAPGISGP---PGFPGVRGLPGVNGS 506
Query: 222 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
P G + +P +PG G + A PGP P +PG
Sbjct: 507 PGQPGAKGNTGSPGVPGYKGESGAKGETGA---PGPRGLPGVPG 547
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 81/212 (38%), Gaps = 18/212 (8%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLP-GPSSAPDLPGPSSAPDL 83
P + G P L G PG P PGP S P P GP GP +P L
Sbjct: 345 PGVKGHRGFPGLDGIKGEQGPPGEKGIPGNPGPVGPSGPVGPSGPRGERGREGPQGSPGL 404
Query: 84 PGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDL 137
G P LPG P PG P G +P GP + L GP S P
Sbjct: 405 RGMDGIAGPPGLPGEMGKPGPPGFPGIPGAKGDHGSP---GPKGSQGLQGPRGESGRPGQ 461
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
PG + P +PG +P G AP + GP P PG P + G P G + +
Sbjct: 462 PGETGLPGIPGKDGSPGEKGNPGAPGISGP---PGFPGVRGLPGVNGSPGQPGAKGNTGS 518
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
P +PG G + AP GP P +PG
Sbjct: 519 PGVPGYKGESGAKGETGAP---GPRGLPGVPG 547
>gi|403268668|ref|XP_003926391.1| PREDICTED: collagen alpha-1(IX) chain isoform 1 [Saimiri
boliviensis boliviensis]
Length = 921
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 74/233 (31%), Gaps = 15/233 (6%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG S P LPG G P G G GP A L G +
Sbjct: 417 PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGI 476
Query: 90 PDLPGPSSAPDL---PGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G A L PGP P PG P GP G P LPGP
Sbjct: 477 VGDKGEKGARGLDGEPGPQGIPGAPGDQGQRGPPGEAGPKGDRGAQGVRGIPGLPGPKGD 536
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
L G +PG +PG P PGP L G P +PG G
Sbjct: 537 TGLAGVDGHDGIPG------MPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGS 590
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ AP PG PG P GP LPG GP +P LPG
Sbjct: 591 TGAPGKPGQMGNSGKPGQQGPPGEAGPRGPRGLPGSRGE---MGPVGSPGLPG 640
>gi|397476410|ref|XP_003809596.1| PREDICTED: collagen alpha-1(IX) chain isoform 1 [Pan paniscus]
Length = 921
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 77/233 (33%), Gaps = 15/233 (6%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG S P LPG G P G G GP A L G +
Sbjct: 417 PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGEFGEVGAQGPPGAQGLRGITGI 476
Query: 90 PDLPGPSSAPDL---PGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G A L PGP P PG P GP G P LPG
Sbjct: 477 VGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGSKGD 536
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
LPG +PG +PG P PGP L G P +PG G
Sbjct: 537 TGLPGVDGRDGIPG------MPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGS 590
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ AP PG PG P GP LPG S +L GP +P LPG
Sbjct: 591 AGAPGKPGQMGNSGKPGQQGPPGEVGPRGPRGLPG--SRGEL-GPVGSPGLPG 640
>gi|227522|prf||1705298A collagen alpha1(IV)
Length = 1529
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 78/216 (36%), Gaps = 9/216 (4%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
LP ER L P L G LPG AP +PG P L G PG AP P
Sbjct: 1319 LPGYPGERGL-PGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAP 1371
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G + P G P G S PG P + GP PG LPG
Sbjct: 1372 GSNGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGRE 1431
Query: 136 DLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
LPGP + + PG PG P LPG + PG + P PG P PG
Sbjct: 1432 GLPGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPG 1491
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
S P G G + P LPG P PG
Sbjct: 1492 LSGMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1527
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 76/214 (35%), Gaps = 8/214 (3%)
Query: 36 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 95
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1320 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1373
Query: 96 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 155
+ P G P G S PG P + GP PG LPG L
Sbjct: 1374 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1433
Query: 156 PGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 213
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1434 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1493
Query: 214 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
P G G + P LPG P PG
Sbjct: 1494 GMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1527
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 76/214 (35%), Gaps = 8/214 (3%)
Query: 54 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 113
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1320 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1373
Query: 114 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 173
+ P G P G S PG P + GP PG LPG L
Sbjct: 1374 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1433
Query: 174 PGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1434 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1493
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
P G G + P LPG P PG
Sbjct: 1494 GMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1527
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 76/214 (35%), Gaps = 8/214 (3%)
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1320 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1373
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
+ P G P G S PG P + GP PG LPG L
Sbjct: 1374 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1433
Query: 192 PGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1434 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1493
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
P G G + P LPG P PG
Sbjct: 1494 GMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1527
>gi|307213363|gb|EFN88815.1| Structural maintenance of chromosomes protein 1A [Harpegnathos
saltator]
Length = 2587
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 81/223 (36%), Gaps = 23/223 (10%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
L G + PGP LPG L G P L G + LPG +P GP
Sbjct: 1931 LQGLQGSQGFPGPQGLIGLPG------LKGDRGYPGLKGEQGSSGLPG---SPGEVGPQG 1981
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS----SAP 180
L G PG P L GP GP + P PG +P +PG S +A
Sbjct: 1982 LTGLTGTKGIRGEPGARGEPGLMGPPGVTGQVGP-AGP--PGNVGSPGVPGTSGIKGNAG 2038
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
D+ G P G P + G PGPS L GP P G P PGP
Sbjct: 2039 DV-GRQGFPGPIGNPGPPGIDGNKGESGSPGPSGPAGLQGPQGTPGERGLPGLPGSPGPI 2097
Query: 241 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
L G AP G P GPS L GP P LPG
Sbjct: 2098 GNRGLRG---APGETGQPGKPGSEGPSGPSGLVGP---PGLPG 2134
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 81/223 (36%), Gaps = 23/223 (10%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
L G + PGP LPG L G P L G + LPG +P GP
Sbjct: 1931 LQGLQGSQGFPGPQGLIGLPG------LKGDRGYPGLKGEQGSSGLPG---SPGEVGPQG 1981
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS----SAP 189
L G PG P L GP GP + P PG +P +PG S +A
Sbjct: 1982 LTGLTGTKGIRGEPGARGEPGLMGPPGVTGQVGP-AGP--PGNVGSPGVPGTSGIKGNAG 2038
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
D+ G P G P + G PGPS L GP P G P PGP
Sbjct: 2039 DV-GRQGFPGPIGNPGPPGIDGNKGESGSPGPSGPAGLQGPQGTPGERGLPGLPGSPGPI 2097
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
L G AP G P GPS L GP P LPG
Sbjct: 2098 GNRGLRG---APGETGQPGKPGSEGPSGPSGLVGP---PGLPG 2134
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 77/215 (35%), Gaps = 20/215 (9%)
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
L G + PGP LPG L G P L G + LPG +P GP
Sbjct: 1931 LQGLQGSQGFPGPQGLIGLPG------LKGDRGYPGLKGEQGSSGLPG---SPGEVGPQG 1981
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS----SAP 198
L G PG P L GP GP + P PG +P +PG S +A
Sbjct: 1982 LTGLTGTKGIRGEPGARGEPGLMGPPGVTGQVGP-AGP--PGNVGSPGVPGTSGIKGNAG 2038
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
D+ G P G P + G PGPS L GP P G P PGP
Sbjct: 2039 DV-GRQGFPGPIGNPGPPGIDGNKGESGSPGPSGPAGLQGPQGTPGERGLPGLPGSPGPI 2097
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
L G AP G P GPS L GP
Sbjct: 2098 GNRGLRG---APGETGQPGKPGSEGPSGPSGLVGP 2129
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 84/257 (32%), Gaps = 18/257 (7%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
G P G S P + GP P LPG G + P PGP LPG
Sbjct: 1327 FQGTRGEPGESGTSGPPGVSGPRGLPGLPGKDGVSGEDGETGPPGSPGPVGPRGLPGMPG 1386
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
+ G P L G G + PGP GP+ GP G
Sbjct: 1387 LTGMKGHRGFPGLDGAKGEQGTTGEKGSMGAPGPMGPIGQIGPA------GPRGERGREG 1440
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
PS P + G + G S P PG PG +P G A GP +
Sbjct: 1441 PSGPPGMRG------VDGISGPPGQPGAVGKSGPPGFPGSPGAKGDQGAQ---GPKGSQG 1491
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
L GP PG GP +PG GP+ P PG P + G
Sbjct: 1492 LQGPRGESGRPGQPGETGSQGPQGKDGVPGEKGMAGAAGPAGVPGFPGTRGQPGIAGN-- 1549
Query: 269 APDLPGPSSAPDLPGPS 285
P +PG P LPG
Sbjct: 1550 -PGVPGAKGIPGLPGER 1565
>gi|350595880|ref|XP_003484198.1| PREDICTED: collagen alpha-5(IV) chain-like, partial [Sus scrofa]
Length = 1041
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 69/174 (39%), Gaps = 21/174 (12%)
Query: 33 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 92
P PGP+ G P LPGP PDL G PG P + GP L
Sbjct: 878 QGQPGFPGPAGEKGSKGEPGLPGLPGPMD-PDLLGSKGEKGDPGLPGIPGVSGPKGYQGL 936
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
PG P PG P LPGPS GP P LPG P L GP P L G
Sbjct: 937 PG---DPGQPGLRGQPGLPGPS------GPKGNPGLPG---KPGLTGP---PGLKGNIGD 981
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA--PDLPGPS 204
PGP A G +P +PG +P LPG PG S P LPGP
Sbjct: 982 MGFPGPQGA---KGSLGSPGVPGQPGSPGLPGQKGEKGDPGISGIGLPGLPGPK 1032
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 69/174 (39%), Gaps = 21/174 (12%)
Query: 69 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 128
P PGP+ G P LPGP PDL G PG P + GP L
Sbjct: 878 QGQPGFPGPAGEKGSKGEPGLPGLPGPMD-PDLLGSKGEKGDPGLPGIPGVSGPKGYQGL 936
Query: 129 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
PG P PG P LPGPS GP P LPG P L GP P L G
Sbjct: 937 PG---DPGQPGLRGQPGLPGPS------GPKGNPGLPG---KPGLTGP---PGLKGNIGD 981
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA--PDLPGPS 240
PGP A G +P +PG +P LPG PG S P LPGP
Sbjct: 982 MGFPGPQGA---KGSLGSPGVPGQPGSPGLPGQKGEKGDPGISGIGLPGLPGPK 1032
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 69/174 (39%), Gaps = 21/174 (12%)
Query: 105 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 164
P PGP+ G P LPGP PDL G PG P + GP L
Sbjct: 878 QGQPGFPGPAGEKGSKGEPGLPGLPGPMD-PDLLGSKGEKGDPGLPGIPGVSGPKGYQGL 936
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PG P PG P LPGPS GP P LPG P L GP P L G
Sbjct: 937 PG---DPGQPGLRGQPGLPGPS------GPKGNPGLPG---KPGLTGP---PGLKGNIGD 981
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA--PDLPGPS 276
PGP A G +P +PG +P LPG PG S P LPGP
Sbjct: 982 MGFPGPQGA---KGSLGSPGVPGQPGSPGLPGQKGEKGDPGISGIGLPGLPGPK 1032
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 64/165 (38%), Gaps = 15/165 (9%)
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
P PGP+ G P LPGP PDL G PG P + GP L
Sbjct: 878 QGQPGFPGPAGEKGSKGEPGLPGLPGPMD-PDLLGSKGEKGDPGLPGIPGVSGPKGYQGL 936
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
PG P PG P LPGPS PG P L GP P L G PGP A
Sbjct: 937 PG---DPGQPGLRGQPGLPGPSGPKGNPGLPGKPGLTGP---PGLKGNIGDMGFPGPQGA 990
Query: 261 ------PDLPGPSSAPDLPGPSSAPDLPGPSSA--PDLPGPSSTV 297
P +PG +P LPG PG S P LPGP +
Sbjct: 991 KGSLGSPGVPGQPGSPGLPGQKGEKGDPGISGIGLPGLPGPKVIL 1035
>gi|380021507|ref|XP_003694605.1| PREDICTED: fibril-forming collagen alpha chain-like [Apis florea]
Length = 1507
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 75/217 (34%), Gaps = 9/217 (4%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
G P G + P L GP P + G P LPG + GPS LPG AP
Sbjct: 723 GERGFPGERGAAGGPGLMGPRGEPGVQGLDGPPGLPGVKGEKGISGPSGLVGLPGLRGAP 782
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 159
GP GP L GP GP PGP P G S P LPG +
Sbjct: 783 GESGPKGER---GPIGPIGLEGPPGRIGERGPQGQIGPPGPPGEPAERGDSGLPGLPGET 839
Query: 160 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
AP PG L G PGP LPG PG GP P
Sbjct: 840 GAPGNPGERGPQGLQGLQG---FPGPQGLIGLPGLKGDRGYPGLKGDQGNSGPPGNPGET 896
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
GP L G PG P + GP P +PG
Sbjct: 897 GPQGLIGLTGSKGIRGEPGARGEPGIIGP---PGVPG 930
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 75/217 (34%), Gaps = 9/217 (4%)
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
G P G + P L GP P + G P LPG + GPS LPG AP
Sbjct: 723 GERGFPGERGAAGGPGLMGPRGEPGVQGLDGPPGLPGVKGEKGISGPSGLVGLPGLRGAP 782
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
GP GP L GP GP PGP P G S P LPG +
Sbjct: 783 GESGPKGER---GPIGPIGLEGPPGRIGERGPQGQIGPPGPPGEPAERGDSGLPGLPGET 839
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
AP PG L G PGP LPG PG GP P
Sbjct: 840 GAPGNPGERGPQGLQGLQG---FPGPQGLIGLPGLKGDRGYPGLKGDQGNSGPPGNPGET 896
Query: 247 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
GP L G PG P + GP P +PG
Sbjct: 897 GPQGLIGLTGSKGIRGEPGARGEPGIIGP---PGVPG 930
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 71/209 (33%), Gaps = 6/209 (2%)
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
G P G + P L GP P + G P LPG + GPS LPG AP
Sbjct: 723 GERGFPGERGAAGGPGLMGPRGEPGVQGLDGPPGLPGVKGEKGISGPSGLVGLPGLRGAP 782
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
GP GP L GP GP PGP P G S P LPG +
Sbjct: 783 GESGPKGE---RGPIGPIGLEGPPGRIGERGPQGQIGPPGPPGEPAERGDSGLPGLPGET 839
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
AP PG L G PGP LPG PG GP P
Sbjct: 840 GAPGNPGERGPQGLQGLQG---FPGPQGLIGLPGLKGDRGYPGLKGDQGNSGPPGNPGET 896
Query: 265 GPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
GP L G PG P + GP
Sbjct: 897 GPQGLIGLTGSKGIRGEPGARGEPGIIGP 925
>gi|327285572|ref|XP_003227507.1| PREDICTED: collagen alpha-2(VIII) chain-like [Anolis carolinensis]
Length = 694
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 85/245 (34%), Gaps = 30/245 (12%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--APDLPGPSSAPDLPGPSSAPDLPGP 113
+PG S P L GP PG P +PGP+ P LPG PG P L G
Sbjct: 271 VPGVSGVPGLQGPLGPKGEPGLRGLPGMPGPTGYGKPGLPGLKGDRGQPG---VPGLIGD 327
Query: 114 SSAPDLPG---------------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 158
P + G P + +PG P + G + PG GP
Sbjct: 328 KGEPGMDGELGDMGPPGIPGAPGPPGSMGMPGKHGNPGIKGEAGPSGPPGLPGMRGDQGP 387
Query: 159 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
S PG LPG GP G P L GPS A G P L
Sbjct: 388 SGFVGKPGIPGERGLPGSQGLQGPTGPKGEAGFMGLPGVPGLTGPSGAKGDSGIPGQPGL 447
Query: 219 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 278
G S P L GPS GP LPG P PG AP + G P + GP
Sbjct: 448 RGSSGIPGLQGPS------GPMGPQGLPGLKGEPGFPG---APGI-GKVGEPGIIGPIGP 497
Query: 279 PDLPG 283
+PG
Sbjct: 498 QGVPG 502
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 82/237 (34%), Gaps = 30/237 (12%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--APDLPGPSSAPDLPGPSSAPDLPGP 131
+PG S P L GP PG P +PGP+ P LPG PG P L G
Sbjct: 271 VPGVSGVPGLQGPLGPKGEPGLRGLPGMPGPTGYGKPGLPGLKGDRGQPG---VPGLIGD 327
Query: 132 SSAPDLPG---------------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
P + G P + +PG P + G + PG GP
Sbjct: 328 KGEPGMDGELGDMGPPGIPGAPGPPGSMGMPGKHGNPGIKGEAGPSGPPGLPGMRGDQGP 387
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
S PG LPG GP G P L GPS A G P L
Sbjct: 388 SGFVGKPGIPGERGLPGSQGLQGPTGPKGEAGFMGLPGVPGLTGPSGAKGDSGIPGQPGL 447
Query: 237 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
G S P L GPS GP LPG P PG AP + G P + GP
Sbjct: 448 RGSSGIPGLQGPS------GPMGPQGLPGLKGEPGFPG---APGI-GKVGEPGIIGP 494
>gi|343887367|ref|NP_001230584.1| collagen, type I, alpha 2 precursor [Sus scrofa]
Length = 1366
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 68/188 (36%), Gaps = 21/188 (11%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E + GP A PG P G L G P PG P PG +
Sbjct: 152 RPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG--- 208
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP------------G 130
PG + A LPG PGP+ A G D GP + P G
Sbjct: 209 TPGQTGARGLPGERGRVGAPGPAGARGNDGSVGPVDPAGPIGSAGPPGFPGAPGPKGELG 268
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
P P GP+ GP LPG S PG A LPG A LPG + AP
Sbjct: 269 PVGNPGPAGPA------GPRGEVGLPGVSGPVGPPGNPGANGLPGAKGAAGLPGVAGAPG 322
Query: 191 LPGPSSAP 198
LPGP P
Sbjct: 323 LPGPRGIP 330
>gi|149744966|ref|XP_001490469.1| PREDICTED: collagen alpha-5(IV) chain-like isoform 1 [Equus caballus]
Length = 1685
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA--PDLPGPSSAPDLPGP 104
PGP PG +P +PG P LPG PG S P LPGP P LPG
Sbjct: 1034 FPGPQGVKGSPG---SPGIPGQPGTPGLPGQKGEKGDPGVSGIGLPGLPGPKGEPGLPGY 1090
Query: 105 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
P + G LPG P PG P LPG P LPGP
Sbjct: 1091 PGNPGIKGSLGDTGLPG---LPGTPGAKGQPGLPGFPGTPGLPGPKG 1134
>gi|348583597|ref|XP_003477559.1| PREDICTED: collagen alpha-2(IV) chain-like [Cavia porcellus]
Length = 1634
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 101/275 (36%), Gaps = 24/275 (8%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P P L G A PG G PG + L GP P L G P L
Sbjct: 1079 PGSPGLKGERGAIGTPGLKGFFGERGAQGEVGFPGITG---LAGPQGPPGLKGQPGFPGL 1135
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G PG P G P +PG P G S LPGP +P PG
Sbjct: 1136 TGVQGPQGDPGRIGFPGEKGDDGWPGIPGLPGFPGQRGISGLHGLPGPKGSPGSPG---- 1191
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG- 202
D+PG P PGP A D P PGP+ P G AP GP+ P + G
Sbjct: 1192 ADMPG---DPGFPGP--AGDRGDPGEPNTFPGPTGVPGQKGAQGAPGDRGPAGRPGMQGF 1246
Query: 203 -----PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
S+ LPG + +P + G P GP LPG S D G + AP +PGP
Sbjct: 1247 PGISPSSNISGLPGDAGSPGIFGLKGYPGPQGPPGPAALPG--SKGDT-GNAGAPGVPGP 1303
Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
GP P + G P GP P L G
Sbjct: 1304 KGWAGDLGPQGRPGVFG---VPGEKGPRGEPGLMG 1335
>gi|395855198|ref|XP_003800057.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-2(IV) chain [Otolemur
garnettii]
Length = 1915
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 99/289 (34%), Gaps = 28/289 (9%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
DLPG P L G + GP G PG + P + GP G
Sbjct: 1343 DLPG---RPGLKGERGSAGTSGPKGFFGEKGTEGDIGFPGITGMPGVQGPPGQKGQTGFP 1399
Query: 88 SAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
L GP P LPG PG P PG L G LPG +P
Sbjct: 1400 GLTGLQGPQGEPGRIGLPGSKGDDGWPGVPGLPGFPGSRGIGGLHGLPGTKGLPG---SP 1456
Query: 145 DLPGPSSAPDLPG------PSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPS 195
GP+ +P L G PS+ PG AP L G P PGP++ P G
Sbjct: 1457 GARGPAGSPGLQGFPGITPPSNISGPPGDKGAPGIFGLEGYQGRPGAPGPAALPGTKGDV 1516
Query: 196 S---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
AP +PG PGP P + G P GP L G + A G
Sbjct: 1517 GNPGAPGVPGTKGWVGDPGPQGRPGVFG---LPGEKGPRGEQGLMGSTGATGTVGDRGPR 1573
Query: 253 DLPGPSSAPDLPGPSSAPDLPGP----SSAPDLPGPSSAPDLPGPSSTV 297
G P PGP+ +P + G + P GP LPG +
Sbjct: 1574 GPKGDPGYPGAPGPAGSPGIAGVPPRIAVQPGTVGPQGRRGLPGAQGEM 1622
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 87/287 (30%), Gaps = 45/287 (15%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------------------ 71
PG LPG LPG P G P +PG
Sbjct: 1026 PGSRGDAGLPGHPGLKGLPGDRGHPGFRGSQGMPGMPGLKGQLGFPGPSGQPGLPGPPGQ 1085
Query: 72 ---PDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSA 125
P LPG LPG LPG P +PGP + G LPG
Sbjct: 1086 HGFPGLPGQEGPLGLPGAPGFGGLPGDRGEPGDTGVPGPVGMKGVSGDRGEAGLPGERGH 1145
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDL 182
P PG +PG P L G +P + G P L G S P PG P L
Sbjct: 1146 PGSPGFKGMVGMPG---TPGLKGDRGSPGMDGFQGMPGLKGRSGFPGSKGEPGFFGVPGL 1202
Query: 183 PGPSSAPDLPGPSS--------------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
G + P + G D+ G G + G P +P
Sbjct: 1203 KGLAGEPGVKGSRGDPGPPGPPPIILPGMKDIKGEKGDEGPMGLKGYLGVKGIQGMPGIP 1262
Query: 229 GPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
G S P LPG P G +PG P L GP PG
Sbjct: 1263 GLSGIPGLPGRPGYIKGAKGDIGIAGVPGLPGLPGLSGPPGIAGFPG 1309
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 91/301 (30%), Gaps = 45/301 (14%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---------------------PDLPG 67
LPG LPG P G P +PG P LPG
Sbjct: 1034 LPGHPGLKGLPGDRGHPGFRGSQGMPGMPGLKGQLGFPGPSGQPGLPGPPGQHGFPGLPG 1093
Query: 68 PSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
LPG LPG P +PGP + G LPG P PG
Sbjct: 1094 QEGPLGLPGAPGFGGLPGDRGEPGDTGVPGPVGMKGVSGDRGEAGLPGERGHPGSPGFKG 1153
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPD 181
+PG P L G +P + G P L G S P PG P L G + P
Sbjct: 1154 MVGMPG---TPGLKGDRGSPGMDGFQGMPGLKGRSGFPGSKGEPGFFGVPGLKGLAGEPG 1210
Query: 182 LPGPSS--------------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 227
+ G D+ G G + G P +PG S P L
Sbjct: 1211 VKGSRGDPGPPGPPPIILPGMKDIKGEKGDEGPMGLKGYLGVKGIQGMPGIPGLSGIPGL 1270
Query: 228 PG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
PG P G +PG P L GP PG + + G L G
Sbjct: 1271 PGRPGYIKGAKGDIGIAGVPGLPGLPGLSGPPGIAGFPGFTGSRGEKGALGRTGLYGEVG 1330
Query: 287 A 287
A
Sbjct: 1331 A 1331
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 92/288 (31%), Gaps = 26/288 (9%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
LP E P + +PGP + G LPG P PG +PG P L
Sbjct: 1109 LPGDRGE-PGDTGVPGPVGMKGVSGDRGEAGLPGERGHPGSPGFKGMVGMPG---TPGLK 1164
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSS-------- 124
G +P + G P L G S P PG P L G + P + G
Sbjct: 1165 GDRGSPGMDGFQGMPGLKGRSGFPGSKGEPGFFGVPGLKGLAGEPGVKGSRGDPGPPGPP 1224
Query: 125 ------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPS 177
D+ G G + G P +PG S P LPG P G
Sbjct: 1225 PIILPGMKDIKGEKGDEGPMGLKGYLGVKGIQGMPGIPGLSGIPGLPGRPGYIKGAKGDI 1284
Query: 178 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDL 236
+PG P L GP PG + + G L G A D DL
Sbjct: 1285 GIAGVPGLPGLPGLSGPPGIAGFPGFTGSRGEKGALGRTGLYGEVGATGDFGDIGDTVDL 1344
Query: 237 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
PG P L G + GP G PG + P + GP
Sbjct: 1345 PG---RPGLKGERGSAGTSGPKGFFGEKGTEGDIGFPGITGMPGVQGP 1389
>gi|410959886|ref|XP_003986529.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(X) chain [Felis
catus]
Length = 674
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 79/198 (39%), Gaps = 16/198 (8%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P PG P +PG P PG + P PG P LPG L G LPG
Sbjct: 265 KPGAPGAPGQPGIPGTKGHPGAPGIAGVPGAPG-FGKPGLPG------LKGQRGPIGLPG 317
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
A GP+ P PG + P GP +PG +PGP GP+ P
Sbjct: 318 SPGAKGEQGPAGHPGEPGLTGPPGNMGPQGPKGIPGNQG---IPGPKGETGPAGPAGHPG 374
Query: 146 LPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
G + L G P PG S P LPGP P + GP P GP+ A +PG
Sbjct: 375 AKGERGSSGLDGKPGYPGEPGTSGLKGNPGLPGPKGDPGVKGPPGLPGPVGPAGAKGVPG 434
Query: 203 PSSAPDLPGPSSAPDLPG 220
+ GP AP +PG
Sbjct: 435 HNGE---AGPRGAPGIPG 449
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 78/199 (39%), Gaps = 16/199 (8%)
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
P PG P +PG P PG + P PG P LPG L G LP
Sbjct: 264 GKPGAPGAPGQPGIPGTKGHPGAPGIAGVPGAPG-FGKPGLPG------LKGQRGPIGLP 316
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
G A GP+ P PG + P GP +PG +PGP GP+ P
Sbjct: 317 GSPGAKGEQGPAGHPGEPGLTGPPGNMGPQGPKGIPGNQG---IPGPKGETGPAGPAGHP 373
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
G + L G P PG S P LPGP P + GP P GP+ A +P
Sbjct: 374 GAKGERGSSGLDGKPGYPGEPGTSGLKGNPGLPGPKGDPGVKGPPGLPGPVGPAGAKGVP 433
Query: 247 GPSSAPDLPGPSSAPDLPG 265
G + GP AP +PG
Sbjct: 434 GHNGE---AGPRGAPGIPG 449
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 77/191 (40%), Gaps = 16/191 (8%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +P +PG P PG + P PG P LPG L G LPG A
Sbjct: 272 PGQPGIPGTKGHPGAPGIAGVPGAPG-FGKPGLPG------LKGQRGPIGLPGSPGAKGE 324
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
GP+ P PG + P GP +PG +PGP GP+ P G +
Sbjct: 325 QGPAGHPGEPGLTGPPGNMGPQGPKGIPGNQG---IPGPKGETGPAGPAGHPGAKGERGS 381
Query: 144 PDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
L G P PG S P LPGP P + GP P GP+ A +PG +
Sbjct: 382 SGLDGKPGYPGEPGTSGLKGNPGLPGPKGDPGVKGPPGLPGPVGPAGAKGVPGHNGE--- 438
Query: 201 PGPSSAPDLPG 211
GP AP +PG
Sbjct: 439 AGPRGAPGIPG 449
>gi|110761872|ref|XP_391942.3| PREDICTED: collagen alpha-1(XI) chain-like isoform 1 [Apis
mellifera]
Length = 1755
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 70/227 (30%), Gaps = 21/227 (9%)
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
L GP P +PG S A PG P +PG L G PG G
Sbjct: 650 LVGPQGKPGIPGLSGADGSPGHPGNPGIPGTKGEQGLQGSQGPIGFPGVRGIKGDEGKRG 709
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+P G + G D+ G P L GP P L G GP L G
Sbjct: 710 SPGERGEKGEKGVEGEKG--DV-GAKGEPGLSGPQGIPGLEGLEGPKGFEGPRGESGLIG 766
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP----- 257
P P G + P G P G GP+ G + A G
Sbjct: 767 P---PGEKGKTGPPGFVGYPGNPGEKGDKGQSGREGPNGDKGERGTNGAQGERGEPGPRG 823
Query: 258 -------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
A LPGP PGP PGP P + GP V
Sbjct: 824 FRGARGRRGAEGLPGPKGDTGQPGPPGLQGEPGP---PGIEGPRGFV 867
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 71/231 (30%), Gaps = 21/231 (9%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
L GP P +PG S A PG P +PG L G PG G
Sbjct: 650 LVGPQGKPGIPGLSGADGSPGHPGNPGIPGTKGEQGLQGSQGPIGFPGVRGIKGDEGKRG 709
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
+P G + G D+ G P L GP P L G GP L G
Sbjct: 710 SPGERGEKGEKGVEGEKG--DV-GAKGEPGLSGPQGIPGLEGLEGPKGFEGPRGESGLIG 766
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP----- 221
P P G + P G P G GP+ G + A G
Sbjct: 767 P---PGEKGKTGPPGFVGYPGNPGEKGDKGQSGREGPNGDKGERGTNGAQGERGEPGPRG 823
Query: 222 -------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
A LPGP PGP PGP P + GP PG
Sbjct: 824 FRGARGRRGAEGLPGPKGDTGQPGPPGLQGEPGP---PGIEGPRGFVGAPG 871
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 71/231 (30%), Gaps = 21/231 (9%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
L GP P +PG S A PG P +PG L G PG G
Sbjct: 650 LVGPQGKPGIPGLSGADGSPGHPGNPGIPGTKGEQGLQGSQGPIGFPGVRGIKGDEGKRG 709
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
+P G + G D+ G P L GP P L G GP L G
Sbjct: 710 SPGERGEKGEKGVEGEKG--DV-GAKGEPGLSGPQGIPGLEGLEGPKGFEGPRGESGLIG 766
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP----- 230
P P G + P G P G GP+ G + A G
Sbjct: 767 P---PGEKGKTGPPGFVGYPGNPGEKGDKGQSGREGPNGDKGERGTNGAQGERGEPGPRG 823
Query: 231 -------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
A LPGP PGP PGP P + GP PG
Sbjct: 824 FRGARGRRGAEGLPGPKGDTGQPGPPGLQGEPGP---PGIEGPRGFVGAPG 871
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 71/231 (30%), Gaps = 21/231 (9%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
L GP P +PG S A PG P +PG L G PG G
Sbjct: 650 LVGPQGKPGIPGLSGADGSPGHPGNPGIPGTKGEQGLQGSQGPIGFPGVRGIKGDEGKRG 709
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
+P G + G D+ G P L GP P L G GP L G
Sbjct: 710 SPGERGEKGEKGVEGEKG--DV-GAKGEPGLSGPQGIPGLEGLEGPKGFEGPRGESGLIG 766
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP----- 248
P P G + P G P G GP+ G + A G
Sbjct: 767 P---PGEKGKTGPPGFVGYPGNPGEKGDKGQSGREGPNGDKGERGTNGAQGERGEPGPRG 823
Query: 249 -------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
A LPGP PGP PGP P + GP PG
Sbjct: 824 FRGARGRRGAEGLPGPKGDTGQPGPPGLQGEPGP---PGIEGPRGFVGAPG 871
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 84/252 (33%), Gaps = 12/252 (4%)
Query: 33 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 92
S AP + G P LPG LPG G + LPG GP P L
Sbjct: 528 SGAPGMKGEQGVPGLPG------LPGDKGERGAVGATGEQGLPGHEGMQGDDGPPGLPGL 581
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
PG GP P LPG P GP A GP P PG GP
Sbjct: 582 PGEMGPRGFIGPRGFPGLPGNPGIPGSEGPPGAKGNTGPPGPPGSPGSPGPMGAVGPPGP 641
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
L GP+ L GP P +PG S A PG P +PG L G PG
Sbjct: 642 QGLLGPTG---LVGPQGKPGIPGLSGADGSPGHPGNPGIPGTKGEQGLQGSQGPIGFPGV 698
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
G +P G + G D+ G P L GP P L G
Sbjct: 699 RGIKGDEGKRGSPGERGEKGEKGVEGEKG--DV-GAKGEPGLSGPQGIPGLEGLEGPKGF 755
Query: 273 PGPSSAPDLPGP 284
GP L GP
Sbjct: 756 EGPRGESGLIGP 767
>gi|149744960|ref|XP_001490495.1| PREDICTED: collagen alpha-5(IV) chain-like isoform 2 [Equus caballus]
Length = 1691
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA--PDLPGPSSAPDLPGP 104
PGP PG +P +PG P LPG PG S P LPGP P LPG
Sbjct: 1034 FPGPQGVKGSPG---SPGIPGQPGTPGLPGQKGEKGDPGVSGIGLPGLPGPKGEPGLPGY 1090
Query: 105 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
P + G LPG P PG P LPG P LPGP
Sbjct: 1091 PGNPGIKGSLGDTGLPG---LPGTPGAKGQPGLPGFPGTPGLPGPKG 1134
Score = 38.1 bits (87), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 68/179 (37%), Gaps = 29/179 (16%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---------------PGPSS 70
+P LPG P + GP LPG P PG S P L PG +
Sbjct: 968 DPGLPG---IPGISGPKGYQGLPG---DPGQPGLSGQPGLPGPSGPKGNPGPPGTPGLTG 1021
Query: 71 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA--PDL 128
P L G PGP PG +P +PG P LPG PG S P L
Sbjct: 1022 PPGLKGNIGDMGFPGPQGVKGSPG---SPGIPGQPGTPGLPGQKGEKGDPGVSGIGLPGL 1078
Query: 129 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
PGP P LPG P + G LPG P PG P LPG P LPGP
Sbjct: 1079 PGPKGEPGLPGYPGNPGIKGSLGDTGLPG---LPGTPGAKGQPGLPGFPGTPGLPGPKG 1134
>gi|363732664|ref|XP_420320.3| PREDICTED: collagen alpha-5(IV) chain [Gallus gallus]
Length = 1693
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
L G LPGP + G + P PGP+ P L G P L P LPGP
Sbjct: 1027 LKGAMGEMGLPGPPGSKGSQGIAGRPGQPGPAGFPGLKGEKGDPGLS-SIGIPGLPGPKG 1085
Query: 197 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
LPG +P G + P LPG P PG P LPG P +PGP
Sbjct: 1086 DLGLPGYPGSPGSKGIAGNPGLPG---LPGSPGAKGEPGLPGFPGTPGIPGPKG 1136
>gi|297685189|ref|XP_002820179.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(XXVII) chain [Pongo
abelii]
Length = 1955
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 68/203 (33%), Gaps = 27/203 (13%)
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
LPG S P PG PGP+ P PGP +P G LPGP P G
Sbjct: 805 LPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKG 864
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------ 229
LPG P G P +PG +PG P + G P L G
Sbjct: 865 SRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGMPG---FPGVFGERGPPGLDGNPGELG 921
Query: 230 -------PSSAPDL--------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
P DL PGP L G P L G +PG S P G
Sbjct: 922 LPGPPGVPGRVGDLGVLGPIGYPGPKGMKGLMGSVGEPGLKGDKGEQGVPGVSGDPGFQG 981
Query: 275 PSSAPDLPGPSSAPDLPGPSSTV 297
+ LPG A PGP V
Sbjct: 982 DKGSQGLPGFPGARGKPGPLGKV 1004
>gi|301604360|ref|XP_002931864.1| PREDICTED: collagen alpha-6(IV) chain-like [Xenopus (Silurana)
tropicalis]
Length = 1643
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 99/322 (30%), Gaps = 62/322 (19%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG P LPG + LPG + L G PG A G S P PGP
Sbjct: 729 PGAPGEPGLPGINGDKGLPGDAG---LSGQRGFDGRPGLMGAKGERGNSGFPGSPGPKGQ 785
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
P G GP PG PG +PG P + G P PG
Sbjct: 786 PGFGGSMGIKGKQGPPGDIGYPGSPGCQGFPGNKG---VPGDRGIPGIAGMKGRPGAPGD 842
Query: 150 SSAP---------------------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
+ P L G P + G + P +PG LPG S
Sbjct: 843 AGRPGELGLPGLPGTGGREGLPGFQGLKGEKGFPGVRGFAGMPGIPG------LPGVSGY 896
Query: 189 PDL---PGPSSAPDLPGPSSAPDLPG----------------PSSAPDLPGPSSAPDLPG 229
+ PG G LPG A GPS P G
Sbjct: 897 KGICGSPGQDGQKGNDGIKGVKGLPGDRGPPGAVMPPPPGLLSKGAQGEQGPSGPPGFTG 956
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPS 285
P PG P +PG P PG P PG P PGP P + G
Sbjct: 957 PRGDKGFPG---LPGIPGNPGFPGNPGRDKGFPGDPGFPGAFGRPGFPGPKGEPGIIG-- 1011
Query: 286 SAPDLPGPSSTVLGSYLGEAGH 307
P +PGP+ G LG+ G
Sbjct: 1012 -FPGMPGPNVRERGETLGQPGR 1032
>gi|426362827|ref|XP_004048555.1| PREDICTED: collagen alpha-1(XXVII) chain [Gorilla gorilla gorilla]
Length = 2003
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 67/200 (33%), Gaps = 3/200 (1%)
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
LPG S P PG PGP+ P PGP +P G LPGP P G
Sbjct: 838 LPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKG 897
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
LPG P G P +PG +PG GP PG P
Sbjct: 898 SRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGMPGFPGVFGERGPPGLDGNPGELGLPG 957
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
PG G PGP L G P L G +PG S P G
Sbjct: 958 PPGVPGLIGDLGVLGPIGYPGPKGMKGLMGSVGEPGLKGDKGEQGVPGVSGDPGFQGDKG 1017
Query: 278 APDLPGPSSAPDLPGPSSTV 297
+ LPG A PGP V
Sbjct: 1018 SQGLPGFPGARGKPGPLGKV 1037
>gi|152031574|sp|P02457.3|CO1A1_CHICK RecName: Full=Collagen alpha-1(I) chain; AltName: Full=Alpha-1 type
I collagen; Flags: Precursor
Length = 1453
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 86/220 (39%), Gaps = 12/220 (5%)
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGP 140
PG A PG + AP PG GPS AP G S P PG + A PGP
Sbjct: 383 PGAKGATGAPGIAGAPGFPGARGPSGPQGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGP 442
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ PGP+ G A PGP+ LPGP+ PG P G +
Sbjct: 443 AGVQGPPGPAGE---EGKRGARGEPGPAG---LPGPAGERGAPGSRGFPGADGIAGPKGP 496
Query: 201 PGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
PG +P GP +P PG + P G + +P PGP PGP+ PGP
Sbjct: 497 PGERGSPGAVGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGP 556
Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+ P G + PGP A PG PGP V
Sbjct: 557 AGPPGARGQAGVMGFPGPKGAAGEPGKPGERGAPGPPGAV 596
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 85/216 (39%), Gaps = 12/216 (5%)
Query: 48 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGP 104
PG A PG + AP PG GPS AP G S P PG + A PGP
Sbjct: 383 PGAKGATGAPGIAGAPGFPGARGPSGPQGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGP 442
Query: 105 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 164
+ PGP+ G A PGP+ LPGP+ PG P G +
Sbjct: 443 AGVQGPPGPAGE---EGKRGARGEPGPAG---LPGPAGERGAPGSRGFPGADGIAGPKGP 496
Query: 165 PGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 221
PG +P GP +P PG + P G + +P PGP PGP+ PGP
Sbjct: 497 PGERGSPGAVGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGP 556
Query: 222 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
+ P G + PGP A PG PGP
Sbjct: 557 AGPPGARGQAGVMGFPGPKGAAGEPGKPGERGAPGP 592
>gi|300676829|gb|ADK26705.1| collagen, type X, alpha 1 [Zonotrichia albicollis]
Length = 677
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 53/132 (40%), Gaps = 9/132 (6%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 97
LPGP D+ GP+ P PG LPG P PG L GP LPGP
Sbjct: 349 LPGPKG--DM-GPAGHPGFPGAKGERGLPGLEGKPGYPGEQG---LAGPKGHAGLPGPKG 402
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
GP+ P LPGP G S PGP +PG PG AP G
Sbjct: 403 DT---GPAGLPGLPGPMGPQGAKGVSGTNGEPGPRGPSGIPGIRGPIGPPGVPGAPGAKG 459
Query: 158 PSSAPDLPGPSS 169
AP LPGP+
Sbjct: 460 EPGAPGLPGPAG 471
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 53/132 (40%), Gaps = 9/132 (6%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
LPGP D+ GP+ P PG LPG P PG L GP LPGP
Sbjct: 349 LPGPKG--DM-GPAGHPGFPGAKGERGLPGLEGKPGYPGEQG---LAGPKGHAGLPGPKG 402
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
GP+ P LPGP G S PGP +PG PG AP G
Sbjct: 403 DT---GPAGLPGLPGPMGPQGAKGVSGTNGEPGPRGPSGIPGIRGPIGPPGVPGAPGAKG 459
Query: 194 PSSAPDLPGPSS 205
AP LPGP+
Sbjct: 460 EPGAPGLPGPAG 471
Score = 38.1 bits (87), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 53/139 (38%), Gaps = 30/139 (21%)
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
LPGP D+ GP+ P PG LPG P PG L GP LPGP
Sbjct: 349 LPGPKG--DM-GPAGHPGFPGAKGERGLPGLEGKPGYPGEQG---LAGPKGHAGLPGPKG 402
Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----------- 281
GP+ P LPGP GP A + G + P GPS P +
Sbjct: 403 DT---GPAGLPGLPGPM------GPQGAKGVSGTNGEPGPRGPSGIPGIRGPIGPPGVPG 453
Query: 282 ----PGPSSAPDLPGPSST 296
G AP LPGP+
Sbjct: 454 APGAKGEPGAPGLPGPAGI 472
>gi|296198529|ref|XP_002806757.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(IX) chain
[Callithrix jacchus]
Length = 931
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 75/236 (31%), Gaps = 12/236 (5%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG S P LPG G P G G GP A L G +
Sbjct: 417 PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGI 476
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
G A L G +PG S GP P GP G P LPGP
Sbjct: 477 VGDKGEKGARGLDGEPGPQGIPGASGDQGQRGP---PGEVGPKGDRGAQGVRGIPGLPGP 533
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
L G +PG +PG P PGP L G P +PG
Sbjct: 534 KGDTGLAGVDGRDGIPG------MPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGE 587
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
G + AP PG PG P GP LPG GP +P LPG
Sbjct: 588 KGSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGPRGLPGSRGE---MGPVGSPGLPG 640
>gi|326670519|ref|XP_694040.5| PREDICTED: collagen alpha-1(IV) chain [Danio rerio]
Length = 1640
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 68/209 (32%), Gaps = 18/209 (8%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP EP L GP PGP G P G P +PG LPG P
Sbjct: 1105 RPGEPGLQGP------PGPHGEKGQSGQDGIPGFTGERGEPGVPGRG----LPGSRGEPG 1154
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP-GP 140
G P LPG +P +PG L G LPG P G P A + P G
Sbjct: 1155 GKGDKGNPGLPGIPGSPGIPGTKGDKGLSG------LPGDQGRPGERGLPGQAMEGPKGD 1208
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
PG A GP P G G AP G G S P L
Sbjct: 1209 RGDQGQPGERGATGEQGPPGIPGSAGSKGEKGDVGFQGAPGSRGYKGDKGFIGVSGEPGL 1268
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
PG + GP P PG + G
Sbjct: 1269 PGYNGPKGEMGPQGVPGFPGTKGEQGVIG 1297
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 92/298 (30%), Gaps = 49/298 (16%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGPSSAPDLP 84
E LPGPS G + AP L G A PG AP L G P G P +
Sbjct: 470 EKGLPGPSGPAGNAGFNGAPGLMGKPGAQGEPGDIFVAPGLKGDKGLPGTTGDRGFPGVD 529
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--APD---------------LPGPSSAPD 127
G LPG P PG P G PD P
Sbjct: 530 G------LPGKDGRPGYPGTKGEPAKFGIKGDRGPDGDFGVPGPPGERGPPGEPGIGRPG 583
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPD----LPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
PG + PG P L G LPGP AP G S P L G P
Sbjct: 584 QPGDKGSAGFPGAPGRPGLQGAKGEAGKVISLPGPQGAPGPRGESGRPGLQGDRG---FP 640
Query: 184 GPSSAPDLPGPSS-----------------APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 226
G P PG +PGPS P G LPG + P
Sbjct: 641 GERGVPGFPGDKGDPGLPGIGLPGPPGPKGYSGIPGPSGIPGESGEPGQDGLPGRAGTPG 700
Query: 227 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
G LPGP LPG P G + P +PG PGP PGP
Sbjct: 701 QKG-EPGRGLPGPKGTTGLPGVPGFPGEKGNTGMPGVPGTEGRTGPPGPQGLKGNPGP 757
>gi|432881812|ref|XP_004073917.1| PREDICTED: collagen alpha-2(VIII) chain-like [Oryzias latipes]
Length = 683
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 51/137 (37%), Gaps = 6/137 (4%)
Query: 35 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 94
P LPGP LPG P PG LPGP PG P + GP A PG
Sbjct: 226 VPGLPGPKGDNGLPGDQGKPGEPGAPGLQGLPGPVGLGK-PGLDGLPGVTGPLGAKGEPG 284
Query: 95 PSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
P +P PG P + GP G P L G + GP+ P + G
Sbjct: 285 PRGSPGAPGTPGYGKPGVTGPKGE---KGHGGFPGLKGDRGEQGMVGPTGGPGIDGLPGP 341
Query: 153 PDLPGPSSAPDLPGPSS 169
P L GP P G S
Sbjct: 342 PGLQGPMGLPGKHGLSG 358
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 51/137 (37%), Gaps = 6/137 (4%)
Query: 53 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 112
P LPGP LPG P PG LPGP PG P + GP A PG
Sbjct: 226 VPGLPGPKGDNGLPGDQGKPGEPGAPGLQGLPGPVGLGK-PGLDGLPGVTGPLGAKGEPG 284
Query: 113 PSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
P +P PG P + GP G P L G + GP+ P + G
Sbjct: 285 PRGSPGAPGTPGYGKPGVTGPKGEK---GHGGFPGLKGDRGEQGMVGPTGGPGIDGLPGP 341
Query: 171 PDLPGPSSAPDLPGPSS 187
P L GP P G S
Sbjct: 342 PGLQGPMGLPGKHGLSG 358
>gi|397526985|ref|XP_003833391.1| PREDICTED: collagen alpha-1(XXVII) chain [Pan paniscus]
Length = 1969
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 67/200 (33%), Gaps = 3/200 (1%)
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
LPG S P PG PGP+ P PGP +P G LPGP P G
Sbjct: 800 LPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKG 859
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
LPG P G P +PG +PG GP PG P
Sbjct: 860 SRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGMPGFPGVFGERGPPGLDGNPGELGLPG 919
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
PG G PGP L G P L G +PG S P G
Sbjct: 920 PPGVPGLIGDLGVLGPIGYPGPKGMKGLMGSVGEPGLKGDKGEQGVPGVSGDPGFQGDKG 979
Query: 278 APDLPGPSSAPDLPGPSSTV 297
+ LPG A PGP V
Sbjct: 980 SQGLPGFPGARGKPGPLGKV 999
>gi|171846460|gb|AAI61663.1| Col1a1 protein [Danio rerio]
Length = 1366
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 89/248 (35%), Gaps = 24/248 (9%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
LPGP A PG S PG + AP G PG AP GP A PG +
Sbjct: 629 LPGPQGATGEPGKSGEQGAPGEAGAPGPSGSRGDRGFPGERGAPGPAGPVGARGSPGSAG 688
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------------PSS 169
G S A PG P L G +PG A LPG +
Sbjct: 689 NDGAKGESGAAGAPGAQGPPGLQG------MPGERGAAGLPGLKGDRGDQGAKGADGAAG 742
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
+ G + PGP+ AP G S A L GP+ A PG PGP+ G
Sbjct: 743 KDGIRGMTGPIGPPGPAGAPGDKGESGAQGLVGPTGARGPPGERGETGAPGPAG---FAG 799
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
P A LPG P G PGP+ A PGP GP A GP A
Sbjct: 800 PPGADGLPGAKGEPGDNGAKGDAGAPGPAGATGAPGPQGPVGATGPKGARGAAGPPGATG 859
Query: 290 LPGPSSTV 297
PG + V
Sbjct: 860 FPGAAGRV 867
>gi|432921052|ref|XP_004080029.1| PREDICTED: uncharacterized protein LOC101168818 [Oryzias latipes]
Length = 1760
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 43/109 (39%), Gaps = 12/109 (11%)
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
PGP PG LPG P LPG P PGP GP PG +
Sbjct: 1058 PGPPGLAGFPGQKGIAGLPG---DPGLPGTDGRPGTPGPQ------GPKGDSGFPGSPGS 1108
Query: 243 PDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
P PGP +PGPS LPG S P LPG AP PG P
Sbjct: 1109 PGFPGPKGNMGDMGIPGPSGLKGLPGISGRPGLPGQPGAPGFPGSKGEP 1157
>gi|307189122|gb|EFN73578.1| Collagen alpha-1(V) chain [Camponotus floridanus]
Length = 1688
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 76/235 (32%), Gaps = 15/235 (6%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
+PGP P GP L GPS P + GP PG P PG P GPS
Sbjct: 828 VPGP---PGERGPIGESGLAGPSGTPGIIGPQGPAGEPGQPGEPGAPGSPGVPGEVGPSG 884
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
GP L G P G P G + P +PG G AP PG
Sbjct: 885 EQGKEGPPGPSGLTGIKGPPGPSGLPGFPGERGLNGLPGMPGSKGE---MGSIGAPGHPG 941
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 235
A PG +PG G L G LPGP LPG P
Sbjct: 942 DKGAQGEPGKDG---VPGSEGKQGPKGKRGLIGLKGEKGDSGLPGPIGRDGLPGQRGLPG 998
Query: 236 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
PGP LPG GP G L GP + GP P L
Sbjct: 999 SPGPVG---LPGEDGDKGNVGPPGEKGFKGSQGEMGLQGPQG---IQGPRGEPGL 1047
>gi|402896585|ref|XP_003911374.1| PREDICTED: collagen alpha-1(XXVII) chain [Papio anubis]
Length = 1859
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 67/200 (33%), Gaps = 3/200 (1%)
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
LPG S P PG PGP+ P PGP +P G LPGP P G
Sbjct: 694 LPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKG 753
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
LPG P G P +PG +PG GP PG P
Sbjct: 754 SRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGMPGFPGVFGERGPPGLDGNPGELGLPG 813
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
PG G PGP L G P L G +PG S P G
Sbjct: 814 PPGVPGLIGDLGVLGPIGYPGPKGMKGLMGSVGEPGLKGDKGEQGVPGVSGDPGFQGDKG 873
Query: 278 APDLPGPSSAPDLPGPSSTV 297
+ LPG A PGP V
Sbjct: 874 SQGLPGFPGARGKPGPLGKV 893
>gi|32140760|ref|NP_116277.2| collagen alpha-1(XXVII) chain preproprotein [Homo sapiens]
gi|74762504|sp|Q8IZC6.1|CORA1_HUMAN RecName: Full=Collagen alpha-1(XXVII) chain; Flags: Precursor
gi|24251209|gb|AAN41263.1| collagen XXVII proalpha 1 chain precursor [Homo sapiens]
Length = 1860
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 67/200 (33%), Gaps = 3/200 (1%)
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
LPG S P PG PGP+ P PGP +P G LPGP P G
Sbjct: 695 LPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKG 754
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
LPG P G P +PG +PG GP PG P
Sbjct: 755 SRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGMPGFPGVFGERGPPGLDGNPGELGLPG 814
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
PG G PGP L G P L G +PG S P G
Sbjct: 815 PPGVPGLIGDLGVLGPIGYPGPKGMKGLMGSVGEPGLKGDKGEQGVPGVSGDPGFQGDKG 874
Query: 278 APDLPGPSSAPDLPGPSSTV 297
+ LPG A PGP V
Sbjct: 875 SQGLPGFPGARGKPGPLGKV 894
>gi|392394025|ref|YP_006430627.1| hypothetical protein Desde_2503 [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390525103|gb|AFM00834.1| hypothetical protein Desde_2503 [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 665
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 77/232 (33%)
Query: 33 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 92
S +P S P PS P PS P PS P PS P PS
Sbjct: 117 SDGKGVPSSSDGKGAPVPSDGKGAPVPSDGKGAPVPSDGKGAPVPSDGKGAPVPSDGKGA 176
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
P PS P PS P PS P PS P PS P PS P PS
Sbjct: 177 PVPSDGKGAPVPSDGKGAPVPSDGKGAPVPSDGKGAPVPSDGKGAPVPSDGKGAPVPSDG 236
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
P PS P PS P PS P PS P P P PS P P
Sbjct: 237 KGAPVPSDGKGAPVPSDGKGAPVPSDGKGAPVPSDGKGAPMPGDGKGAPVPSDGKGAPVP 296
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
+ +P S +P S P PS P PS +P S +P
Sbjct: 297 NDGKGVPVSSDGKGVPVSSDGKGAPVPSDGKGAPVPSDGKSVPVSSDGKGVP 348
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 76/227 (33%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+P S P PS P PS P PS P PS P PS P PS
Sbjct: 122 VPSSSDGKGAPVPSDGKGAPVPSDGKGAPVPSDGKGAPVPSDGKGAPVPSDGKGAPVPSD 181
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P PS P PS P PS P PS P PS P PS P
Sbjct: 182 GKGAPVPSDGKGAPVPSDGKGAPVPSDGKGAPVPSDGKGAPVPSDGKGAPVPSDGKGAPV 241
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
PS P PS P PS P PS P P P PS P P+
Sbjct: 242 PSDGKGAPVPSDGKGAPVPSDGKGAPVPSDGKGAPMPGDGKGAPVPSDGKGAPVPNDGKG 301
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
+P S +P S P PS P PS +P S +P
Sbjct: 302 VPVSSDGKGVPVSSDGKGAPVPSDGKGAPVPSDGKSVPVSSDGKGVP 348
>gi|355562967|gb|EHH19529.1| Collagen alpha-3(IX) chain, partial [Macaca mulatta]
Length = 659
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
GP PGP P + GPS P +PG +PG G S AP GP+
Sbjct: 250 FRGPKGDLGRPGPKGIPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRSGAPGEKGPNG 309
Query: 107 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 151
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 310 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGIPGDAGMPGERGEAG 357
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
GP PGP P + GPS P +PG +PG G S AP GP+
Sbjct: 250 FRGPKGDLGRPGPKGIPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRSGAPGEKGPNG 309
Query: 134 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 178
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 310 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGIPGDAGMPGERGEAG 357
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
GP PGP P + GPS P +PG +PG G S AP GP+
Sbjct: 250 FRGPKGDLGRPGPKGIPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRSGAPGEKGPNG 309
Query: 197 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 241
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 310 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGIPGDAGMPGERGEAG 357
>gi|426222633|ref|XP_004005491.1| PREDICTED: collagen alpha-4(IV) chain [Ovis aries]
Length = 1613
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 84/257 (32%), Gaps = 36/257 (14%)
Query: 45 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------- 94
P LPG S P PG + L G + P GP+ P PG G
Sbjct: 763 PGLPGKSGLPGAPG---SKGLRGDAGHPGTAGPAGMPGFPGLQGPKGREGNAGFPGIPGP 819
Query: 95 -----PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
AP +PG P PG AP G GP+ LPG P PG
Sbjct: 820 PGHSCERGAPGIPGQPGLPGAPGSPGAPGWKGQRGDMGPLGPAGMKGLPG---VPGRPGA 876
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSA 206
P LPG +PGP+ LPG LPGP LPG P PG
Sbjct: 877 DGTPGLPG------VPGPTGDDGLPG------LPGPKGPQGLPGFLGFPGERGKPGQDGH 924
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
P G PG L G A PG D+ PGPS PG
Sbjct: 925 PGRKGEHGEKGWPGSLGDRGLKGVKGARGPPGYEGEMDIISKKGETGEPGPSGDGGFPGE 984
Query: 267 SSAPDLPGPSSAPDLPG 283
+ PG PG
Sbjct: 985 NGDKGHPGMQGRRGEPG 1001
>gi|301766574|ref|XP_002918709.1| PREDICTED: collagen alpha-2(V) chain-like [Ailuropoda melanoleuca]
Length = 1016
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 96/275 (34%), Gaps = 24/275 (8%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP EP LPG AP G PGP + + G + LPGP G S P
Sbjct: 184 RPGEPGLPGARGAPGEDG------RPGPPGSIGIRGQPGSMGLPGPK------GSSGDPG 231
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
PG + +PG AP G GP P PGP PG PG
Sbjct: 232 KPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLPGPPGPPGEGGKPGDQGERGNPGERG 291
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
P + G LPG GP PGPS P GP +PG PG
Sbjct: 292 EPGITG------LPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPG 345
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P PGP L GP + PGP P + G P PG PGP
Sbjct: 346 PKGDRGEPGPRG---LVGPPGSRGNPGPDGQPGVKG---EPGEPGQKGDAGSPGPQGLAG 399
Query: 263 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
PGP +PG GP A PG + V
Sbjct: 400 SPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRV 434
>gi|119607820|gb|EAW87414.1| collagen, type XXVII, alpha 1, isoform CRA_d [Homo sapiens]
Length = 1860
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 67/200 (33%), Gaps = 3/200 (1%)
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
LPG S P PG PGP+ P PGP +P G LPGP P G
Sbjct: 695 LPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKG 754
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
LPG P G P +PG +PG GP PG P
Sbjct: 755 SRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGMPGFPGVFGERGPPGLDGNPGELGLPG 814
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
PG G PGP L G P L G +PG S P G
Sbjct: 815 PPGVPGLIGDLGVLGPIGYPGPKGMKGLMGSVGEPGLKGDKGEQGVPGVSGDPGFQGDKG 874
Query: 278 APDLPGPSSAPDLPGPSSTV 297
+ LPG A PGP V
Sbjct: 875 SQGLPGFPGARGKPGPLGKV 894
>gi|345778517|ref|XP_538994.3| PREDICTED: collagen alpha-1(IX) chain isoform 1 [Canis lupus
familiaris]
Length = 921
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 72/219 (32%), Gaps = 8/219 (3%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 91
P+S P PG S P LPG G P G G GP A
Sbjct: 412 PNSCP--PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGEQGEVGAQGPPGAQG 469
Query: 92 LPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
L G + G A + PGP P PG PG GP + +PG
Sbjct: 470 LRGITGIVGAKGEKGARGIDGEPGPQGIPGAPGDQGQRGPPGEIGPKGDRGPQGSRGIPG 529
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
P G + P + G P +PG P PGP L G P +PG
Sbjct: 530 ---LPGTKGDTGLPGVDGREGIPGMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAG 586
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
G + AP PG PG P GP LPG
Sbjct: 587 EKGNTGAPGKPGQLGNSGKPGQQGPPGEVGPRGPRGLPG 625
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 72/219 (32%), Gaps = 8/219 (3%)
Query: 50 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 109
P+S P PG S P LPG G P G G GP A
Sbjct: 412 PNSCP--PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGEQGEVGAQGPPGAQG 469
Query: 110 LPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
L G + G A + PGP P PG PG GP + +PG
Sbjct: 470 LRGITGIVGAKGEKGARGIDGEPGPQGIPGAPGDQGQRGPPGEIGPKGDRGPQGSRGIPG 529
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 226
P G + P + G P +PG P PGP L G P +PG
Sbjct: 530 ---LPGTKGDTGLPGVDGREGIPGMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAG 586
Query: 227 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
G + AP PG PG P GP LPG
Sbjct: 587 EKGNTGAPGKPGQLGNSGKPGQQGPPGEVGPRGPRGLPG 625
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 72/219 (32%), Gaps = 8/219 (3%)
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
P+S P PG S P LPG G P G G GP A
Sbjct: 412 PNSCP--PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGEQGEVGAQGPPGAQG 469
Query: 137 LPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
L G + G A + PGP P PG PG GP + +PG
Sbjct: 470 LRGITGIVGAKGEKGARGIDGEPGPQGIPGAPGDQGQRGPPGEIGPKGDRGPQGSRGIPG 529
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
P G + P + G P +PG P PGP L G P +PG
Sbjct: 530 ---LPGTKGDTGLPGVDGREGIPGMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAG 586
Query: 254 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G + AP PG PG P GP LPG
Sbjct: 587 EKGNTGAPGKPGQLGNSGKPGQQGPPGEVGPRGPRGLPG 625
>gi|344264178|ref|XP_003404170.1| PREDICTED: collagen alpha-1(IX) chain [Loxodonta africana]
Length = 921
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 69/215 (32%), Gaps = 12/215 (5%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG S P LPG G P G G GP A L G +
Sbjct: 417 PGHSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGEPGEVGAQGPPGAQGLRGITGI 476
Query: 90 PDLPGPSSAPDL---PGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G A L PGP P PG P GP G P LPGP
Sbjct: 477 VGDKGEKGARGLDGDPGPQGLPGAPGDQGRRGPPGEAGPKGERGAQGSRGIPGLPGPKGD 536
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
LPG +PG +PG P PGP P L G P +PG G
Sbjct: 537 TGLPGVDGHDGIPG------MPGTKGEPGKPGPPGDPGLQGLPGVPGIPGAKGIAGEKGN 590
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
+ AP PG PG P GP +PG
Sbjct: 591 TGAPGKPGQLGNSGKPGHQGPPGEVGPRGPRGIPG 625
>gi|348510895|ref|XP_003442980.1| PREDICTED: collagen alpha-1(X) chain-like [Oreochromis niloticus]
Length = 645
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 104/277 (37%), Gaps = 25/277 (9%)
Query: 23 RPLEPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
+P P PG S +P PGP G + AP + P PG + AP LPG S
Sbjct: 202 KPGSPGEPGKSGSPGSDGAPGPMGPQGPKGHTGAPGV----GLPGKPGENGAPGLPGSSG 257
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
GPS AP PG PG + G + +P GP G + A G
Sbjct: 258 PKGNQGPSGAPGAPGVPGY-GKPGANGEKGERGATGSPGATGPKGEQGPTGYTGATGATG 316
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
P+ GP+ G + AP GP GP G A G P
Sbjct: 317 PT------GPTGPQGERGFTGAPGAVGPKGDTGATGPQGPKGNKGDQGAQGFQGKQGYPG 370
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
GP+ A GPS G AP PG AP +PGP+ PG P GPS
Sbjct: 371 PAGPAGARGETGPSGEK---GNVGAPGTPG---APGIPGPAGPKGHPG---RPGEQGPSG 421
Query: 260 APDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSS 295
+ PG S P P GP+ L G P PGP+
Sbjct: 422 SDGAPG-SRGPTGPQGPAGPQGLKGHPGLPGAPGPAG 457
>gi|297274819|ref|XP_002800878.1| PREDICTED: collagen alpha-2(IV) chain-like [Macaca mulatta]
Length = 1499
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 77/218 (35%), Gaps = 15/218 (6%)
Query: 76 GPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
G P +PG S P LPG P + G AP +PG P + GP PG +
Sbjct: 796 GIQGMPGIPGLSGIPGLPGRPGHIKGVKGDIGAPGIPGLPGFPGVAGP------PGITGF 849
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
P G PG + GP+ D +LPG P L G +PG
Sbjct: 850 PGFIGSRGDKGAPGRAGLYGEIGPTG--DFGDIGDTINLPG---RPGLKGEQGTAGIPGL 904
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
G PG + + GP P L G + P L GP + PG P
Sbjct: 905 KGFFGEKGTEGDIGFPGITGVTGVQGP---PGLKGQTGFPGLTGPPGSQGEPGRIGLPGG 961
Query: 255 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G P +PG P L G LPG P PG
Sbjct: 962 KGDDGWPGIPGLPGFPGLRGIRGLHGLPGTKGFPGSPG 999
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 81/231 (35%), Gaps = 32/231 (13%)
Query: 16 LPSTVTERPLEPDL--PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 73
L E+ E D+ PG + + GP P L G + P L GP + PG P
Sbjct: 904 LKGFFGEKGTEGDIGFPGITGVTGVQGP---PGLKGQTGFPGLTGPPGSQGEPGRIGLPG 960
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------------------PSS 115
G P +PG P L G LPG P PG P
Sbjct: 961 GKGDDGWPGIPGLPGFPGLRGIRGLHGLPGTKGFPGSPGADIHGDPGFPGPPGDRGDPGD 1020
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSS 169
A LPGP P G AP GP +P L G PS+ PG AP + G
Sbjct: 1021 ANTLPGPVGVPGQKGEQGAPGERGPPGSPGLQGFPGITPPSNISGAPGDKGAPGIFGLKG 1080
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
PGP + LPG PG AP PG GP P + G
Sbjct: 1081 YRGPPGPPGSAALPGSKGDAGNPG---APGTPGTKGWAGDSGPQGRPGVFG 1128
>gi|348586281|ref|XP_003478897.1| PREDICTED: collagen alpha-1(XXVII) chain-like isoform 2 [Cavia
porcellus]
Length = 1865
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 67/200 (33%), Gaps = 3/200 (1%)
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
LPG S P PG PGP+ P PGP +P G LPGP P G
Sbjct: 699 LPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKG 758
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
+PG P G P +PG PG GP PG P
Sbjct: 759 SRGYIGIPGLFGLPGSDGERGLPGVPGKRGKMGRPGFPGDFGERGPPGLDGNPGDLGLPG 818
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
PG G PGP L G P L G +PG S P G
Sbjct: 819 PPGVPGLLGDMGALGPLGYPGPKGMKGLMGGVGEPGLKGDKGEQGVPGVSGEPGFQGDKG 878
Query: 278 APDLPGPSSAPDLPGPSSTV 297
+ LPG A PGP+ V
Sbjct: 879 SQGLPGVPGARGKPGPTGRV 898
>gi|383858176|ref|XP_003704578.1| PREDICTED: collagen alpha-1(IV) chain-like [Megachile rotundata]
Length = 1862
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 100/291 (34%), Gaps = 23/291 (7%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P P L G PG P +PG + GP PGP+ + G P +
Sbjct: 1266 PGRPGLNGVKGERGYPGAVGLPGIPGGAGEKGDRGP------PGPTV--QVKGEKGEPGI 1317
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
PG +PG L G + G AP G P GP GPS
Sbjct: 1318 PGRQG---IPGEKGDRGLEGLAGYDGEKGDRGAPGPVGNPGPPGHMGPKGDEGPRGPSGL 1374
Query: 144 PDL--PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--APDLP-GPSSAP 198
P L G P +PG +PG P G P LPG P P GP
Sbjct: 1375 PGLTIKGEKGLPGMPGKHGREGIPG---RPGEKGEQGLPGLPGHKGDQGPYGPIGPEGEK 1431
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
GP+ P PG LPG P LPG GP P PG PG +
Sbjct: 1432 GDMGPAGLPGTPGRDG---LPGLEGMPGLPGEKGDKGDMGPQGLPGAPGQKGDTGFPGLN 1488
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV-LGSYLGEAGHQ 308
LPG G + +P PG PGP+ V + Y GE G +
Sbjct: 1489 GLDGLPGEKGDRGWDGVNGSPGGPGEKGDRGYPGPTGIVGIVGYPGEKGDK 1539
>gi|296200879|ref|XP_002747816.1| PREDICTED: collagen alpha-3(IX) chain [Callithrix jacchus]
Length = 698
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 281 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGRNGVPGLDGQKGEAGRNGAPGEKGPNG 340
Query: 152 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 196
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 341 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 388
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 281 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGRNGVPGLDGQKGEAGRNGAPGEKGPNG 340
Query: 179 APDLPGPSSAPDLPGPSS-APDL--PGPSSAPDLPGPSSAPDLPGPSS 223
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 341 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 388
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PGP P + GPS P +PG +PG G + AP GP+ P LPG + +
Sbjct: 291 PGPKGTPGVAGPSGEPGMPGKDGRNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGS 350
Query: 90 PDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 124
G A +L GPS P +PG + P G +
Sbjct: 351 KGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 388
>gi|348578547|ref|XP_003475044.1| PREDICTED: collagen alpha-2(I) chain-like [Cavia porcellus]
Length = 1393
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 90/241 (37%), Gaps = 11/241 (4%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
GP A PGP GP+ P PG + GP+ P G P PG
Sbjct: 127 GPPGAVGAPGPQG---FQGPAGEPGEPGQTGPAGSRGPAGPPGKAGEDGHPGKPGRPGER 183
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 159
+ GP A PG P GP + G PG P PG + PG +
Sbjct: 184 GVVGPQGARGFPGTPGLPGFKGPRGHNGMDGLKGQAGAPGVKGEPGAPGENG---TPGQA 240
Query: 160 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDL 218
A LPG PGP+ A G S P P GP A PG AP G
Sbjct: 241 GARGLPGERGRVGAPGPTGARGSDG-SVGPVGPAGPIGAAGPPGFPGAPGAKGEIGPVGN 299
Query: 219 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 278
PGPS GP LPG S PG A LPG A LPG + AP LPGP
Sbjct: 300 PGPSGP---AGPRGEVGLPGLSGPVGPPGNPGANGLPGSKGATGLPGVAGAPGLPGPRGI 356
Query: 279 P 279
P
Sbjct: 357 P 357
Score = 38.5 bits (88), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 105/282 (37%), Gaps = 23/282 (8%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EP PG + GP+ P G P PG + GP A PG P G
Sbjct: 146 EPGEPGQTGPAGSRGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKG 205
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P + G PG P PG + PG + A LPG PGP+ A
Sbjct: 206 PRGHNGMDGLKGQAGAPGVKGEPGAPGENG---TPGQAGARGLPGERGRVGAPGPTGARG 262
Query: 146 LPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
G S P P GP A PG AP G PGPS GP LPG S
Sbjct: 263 SDG-SVGPVGPAGPIGAAGPPGFPGAPGAKGEIGPVGNPGPSGP---AGPRGEVGLPGLS 318
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---------P 255
PG A LPG A LPG + AP LPGP +PGP A P
Sbjct: 319 GPVGPPGNPGANGLPGSKGATGLPGVAGAPGLPGPRG---IPGPVGAAGATGARGLVGDP 375
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
GP+ + G S PG + A PGPS GP+ V
Sbjct: 376 GPAGS---KGESGNKGEPGSAGAQGPPGPSGEEGKRGPNGEV 414
>gi|348586279|ref|XP_003478896.1| PREDICTED: collagen alpha-1(XXVII) chain-like isoform 1 [Cavia
porcellus]
Length = 1858
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 67/200 (33%), Gaps = 3/200 (1%)
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
LPG S P PG PGP+ P PGP +P G LPGP P G
Sbjct: 693 LPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKG 752
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
+PG P G P +PG PG GP PG P
Sbjct: 753 SRGYIGIPGLFGLPGSDGERGLPGVPGKRGKMGRPGFPGDFGERGPPGLDGNPGDLGLPG 812
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
PG G PGP L G P L G +PG S P G
Sbjct: 813 PPGVPGLLGDMGALGPLGYPGPKGMKGLMGGVGEPGLKGDKGEQGVPGVSGEPGFQGDKG 872
Query: 278 APDLPGPSSAPDLPGPSSTV 297
+ LPG A PGP+ V
Sbjct: 873 SQGLPGVPGARGKPGPTGRV 892
>gi|27806257|ref|NP_776945.1| collagen alpha-2(I) chain precursor [Bos taurus]
gi|8039779|sp|P02465.2|CO1A2_BOVIN RecName: Full=Collagen alpha-2(I) chain; AltName: Full=Alpha-2 type
I collagen; Flags: Precursor
gi|2967448|dbj|BAA25171.1| alpha2(I) collagen [Bos taurus]
gi|151555719|gb|AAI49096.1| Collagen, type I, alpha 2 [Bos taurus]
gi|296488668|tpg|DAA30781.1| TPA: collagen alpha-2(I) chain precursor [Bos taurus]
Length = 1364
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 66/189 (34%), Gaps = 32/189 (16%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E + GP A PG P G L G P PG P PG +
Sbjct: 150 RPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG--- 206
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---------------------- 120
PG + A LPG PGP+ A G S P P
Sbjct: 207 TPGQTGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGEL 265
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
GP P GP+ GP LPG S PG A LPG A LPG + AP
Sbjct: 266 GPVGNPGPAGPA------GPRGEVGLPGLSGPVGPPGNPGANGLPGAKGAAGLPGVAGAP 319
Query: 181 DLPGPSSAP 189
LPGP P
Sbjct: 320 GLPGPRGIP 328
>gi|355784327|gb|EHH65178.1| Collagen alpha-3(IX) chain, partial [Macaca fascicularis]
Length = 634
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
GP PGP P + GPS P +PG +PG G S AP GP+
Sbjct: 225 FRGPKGDLGRPGPKGIPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRSGAPGEKGPNG 284
Query: 152 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 196
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 285 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 332
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
GP PGP P + GPS P +PG +PG G S AP GP+
Sbjct: 225 FRGPKGDLGRPGPKGIPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRSGAPGEKGPNG 284
Query: 179 APDLPGPSSAPDLPGPSS-APDL--PGPSSAPDLPGPSSAPDLPGPSS 223
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 285 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 332
>gi|449277990|gb|EMC85990.1| Collagen alpha-1(X) chain [Columba livia]
Length = 664
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
LPGP D+ GP+ P +PG LPG P PG L GP P PGP
Sbjct: 349 LPGPKG--DM-GPAGLPGIPGAKGERGLPGLEGKPGYPGEQG---LAGPKGHPGFPGPKG 402
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
G + P LPGP GP A +PG + P GPS P GP P LPG
Sbjct: 403 D---TGHAGLPGLPGPM------GPQGAKGVPGINGEPGPRGPSGIPGTRGPIGPPGLPG 453
Query: 167 PSSAPDLPGPSSAPDLPGPSS 187
A PG AP LPGP+
Sbjct: 454 APGAKGEPG---APGLPGPAG 471
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
LPGP D+ GP+ P +PG LPG P PG L GP P PGP
Sbjct: 349 LPGPKG--DM-GPAGLPGIPGAKGERGLPGLEGKPGYPGEQG---LAGPKGHPGFPGPKG 402
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
G + P LPGP GP A +PG + P GPS P GP P LPG
Sbjct: 403 DT---GHAGLPGLPGPM------GPQGAKGVPGINGEPGPRGPSGIPGTRGPIGPPGLPG 453
Query: 185 PSSAPDLPGPSSAPDLPGPSS 205
A PG AP LPGP+
Sbjct: 454 APGAKGEPG---APGLPGPAG 471
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 55/143 (38%), Gaps = 30/143 (20%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P E LPGP D+ GP+ P +PG LPG P PG L GP P
Sbjct: 344 PGENGLPGPKG--DM-GPAGLPGIPGAKGERGLPGLEGKPGYPGEQG---LAGPKGHPGF 397
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------ 137
PGP G + P LPGP GP A +PG + P GPS P
Sbjct: 398 PGPKGDT---GHAGLPGLPGPM------GPQGAKGVPGINGEPGPRGPSGIPGTRGPIGP 448
Query: 138 ---------PGPSSAPDLPGPSS 151
G AP LPGP+
Sbjct: 449 PGLPGAPGAKGEPGAPGLPGPAG 471
Score = 38.1 bits (87), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
GP+ P +PG LPG P PG L GP P PGP G + P
Sbjct: 357 GPAGLPGIPGAKGERGLPGLEGKPGYPGEQG---LAGPKGHPGFPGPKGD---TGHAGLP 410
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
LPGP GP A +PG + P GPS P GP P LPG A PG
Sbjct: 411 GLPGPM------GPQGAKGVPGINGEPGPRGPSGIPGTRGPIGPPGLPGAPGAKGEPG-- 462
Query: 151 SAPDLPGPSS 160
AP LPGP+
Sbjct: 463 -APGLPGPAG 471
>gi|444707998|gb|ELW49126.1| Collagen alpha-2(I) chain [Tupaia chinensis]
Length = 1195
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 55/135 (40%), Gaps = 14/135 (10%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--- 79
RP E + GP P PG + P G + A LPG PGP+ A G
Sbjct: 187 RPGERGVVGPQGEPGAPGENGTP---GQAGARGLPGERGRVGAPGPAGARGSDGSVGPVG 243
Query: 80 -APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
A +L GP P GP+ GP LPG S PG A L G A LP
Sbjct: 244 PAGEL-GPVGNPGPAGPA------GPRGEIGLPGLSGPVGPPGNPGANGLTGAKGAAGLP 296
Query: 139 GPSSAPDLPGPSSAP 153
G + AP LPGP P
Sbjct: 297 GVAGAPGLPGPRGIP 311
>gi|395540497|ref|XP_003772190.1| PREDICTED: collagen alpha-1(II) chain [Sarcophilus harrisii]
Length = 1490
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 83/233 (35%), Gaps = 12/233 (5%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
+PG + AP L GP PG +P G A LPG P GP A GP+
Sbjct: 688 VPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGARGLPG---TPGTDGPKGATGPAGPNG 744
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
A GP +PG A + GP G PG L + PG
Sbjct: 745 AQ---GPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGL---TGPIGPPG 798
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
P+ G S P G + A PG PGP+ PG P G
Sbjct: 799 PAGPNGEKGESGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGESG 858
Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
G + AP GPS AP GP+ + GP A GP A PG + V
Sbjct: 859 QKGDAGAPGPQGPSGAPGPQGPTG---VTGPKGARGAQGPPGATGFPGAAGRV 908
Score = 38.1 bits (87), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 76/225 (33%), Gaps = 24/225 (10%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+PG + AP L GP PG +P G A LPG P GP A GP+
Sbjct: 688 VPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGARGLPG---TPGTDGPKGATGPAGPNG 744
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----------- 137
A GP +PG A + GP G PG L
Sbjct: 745 A---QGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAG 801
Query: 138 ----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
G S P G + A PG PGP+ PG P G G
Sbjct: 802 PNGEKGESGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGESGQKG 861
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
+ AP GPS AP GP+ + GP A GP A PG
Sbjct: 862 DAGAPGPQGPSGAPGPQGPTG---VTGPKGARGAQGPPGATGFPG 903
Score = 38.1 bits (87), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 76/225 (33%), Gaps = 24/225 (10%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
+PG + AP L GP PG +P G A LPG P GP A GP+
Sbjct: 688 VPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGARGLPG---TPGTDGPKGATGPAGPNG 744
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL----------- 164
A GP +PG A + GP G PG L
Sbjct: 745 A---QGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAG 801
Query: 165 ----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
G S P G + A PG PGP+ PG P G G
Sbjct: 802 PNGEKGESGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGESGQKG 861
Query: 221 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
+ AP GPS AP GP+ + GP A GP A PG
Sbjct: 862 DAGAPGPQGPSGAPGPQGPTG---VTGPKGARGAQGPPGATGFPG 903
>gi|114683123|ref|XP_001150788.1| PREDICTED: collagen alpha-3(IX) chain [Pan troglodytes]
Length = 684
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 275 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 334
Query: 107 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 151
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 335 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 382
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 275 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 334
Query: 134 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 178
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 335 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 382
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 275 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 334
Query: 179 APDLPGPSSAPDLPGPSS-APDL--PGPSSAPDLPGPSSAPDLPGPSS 223
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 335 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 382
>gi|60654277|gb|AAX29831.1| collagen type IX alpha 3 [synthetic construct]
Length = 685
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 275 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 334
Query: 107 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 151
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 335 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 382
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 275 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 334
Query: 134 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 178
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 335 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 382
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 275 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 334
Query: 179 APDLPGPSSAPDLPGPSS-APDL--PGPSSAPDLPGPSSAPDLPGPSS 223
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 335 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 382
>gi|390979787|gb|AFM30918.1| distal byssal thread collagen [synthetic construct]
Length = 1010
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
G S AP PG + PG + P PG + PGPS AP PG A PGP AP
Sbjct: 388 GASGAPGRPGNPGSTGRPGATGDPGRPGATGTTGRPGPSGAPGNPGAPGALGAPGPRGAP 447
Query: 100 DLPGPSSAPDLPGPSSAPDLPG 121
G LPGP +P PG
Sbjct: 448 GFVG------LPGPRGSPGEPG 463
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
G S AP PG + PG + P PG + PGPS AP PG A PGP AP
Sbjct: 388 GASGAPGRPGNPGSTGRPGATGDPGRPGATGTTGRPGPSGAPGNPGAPGALGAPGPRGAP 447
Query: 127 DLPGPSSAPDLPGPSSAPDLPG 148
G LPGP +P PG
Sbjct: 448 GFVG------LPGPRGSPGEPG 463
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
G S AP PG + PG + P PG + PGPS AP PG A PGP AP
Sbjct: 388 GASGAPGRPGNPGSTGRPGATGDPGRPGATGTTGRPGPSGAPGNPGAPGALGAPGPRGAP 447
Query: 163 DLPGPSSAPDLPGPSSAPDLPG 184
G LPGP +P PG
Sbjct: 448 GFVG------LPGPRGSPGEPG 463
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
G S AP PG + PG + P PG + PGPS AP PG A PGP AP
Sbjct: 388 GASGAPGRPGNPGSTGRPGATGDPGRPGATGTTGRPGPSGAPGNPGAPGALGAPGPRGAP 447
Query: 217 DLPGPSSAPDLPGPSSAPDLPG 238
G LPGP +P PG
Sbjct: 448 GFVG------LPGPRGSPGEPG 463
>gi|351695700|gb|EHA98618.1| Collagen alpha-2(I) chain [Heterocephalus glaber]
Length = 1363
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 51/140 (36%), Gaps = 6/140 (4%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
GP A PGP GP+ P PG + GP+ AP G P PG
Sbjct: 95 GPPGAVGAPGPQG---FQGPAGEPGEPGQTGPAGARGPAGAPGKAGEDGHPGKPGRPGER 151
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 159
+ GP A PG P GP + G PG P PG + PG +
Sbjct: 152 GVVGPQGARGFPGTPGLPGFKGPRGHNGMDGLKGQAGAPGVKGEPGAPGENG---TPGQA 208
Query: 160 SAPDLPGPSSAPDLPGPSSA 179
A LPG PGP+ A
Sbjct: 209 GARGLPGERGRVGGPGPTGA 228
>gi|119508426|ref|NP_001844.3| collagen alpha-3(IX) chain precursor [Homo sapiens]
gi|20137327|sp|Q14050.2|CO9A3_HUMAN RecName: Full=Collagen alpha-3(IX) chain; Flags: Precursor
gi|15079801|gb|AAH11705.1| Collagen, type IX, alpha 3 [Homo sapiens]
gi|119595740|gb|EAW75334.1| collagen, type IX, alpha 3, isoform CRA_b [Homo sapiens]
gi|123989276|gb|ABM83872.1| collagen, type IX, alpha 3 [synthetic construct]
gi|123999228|gb|ABM87193.1| collagen, type IX, alpha 3 [synthetic construct]
Length = 684
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 275 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 334
Query: 107 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 151
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 335 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 382
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 275 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 334
Query: 134 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 178
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 335 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 382
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 275 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 334
Query: 179 APDLPGPSSAPDLPGPSS-APDL--PGPSSAPDLPGPSSAPDLPGPSS 223
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 335 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 382
>gi|397479163|ref|XP_003810897.1| PREDICTED: collagen alpha-3(IX) chain [Pan paniscus]
Length = 673
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 264 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 323
Query: 107 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 151
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 324 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 371
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 264 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 323
Query: 134 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 178
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 324 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 371
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 264 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 323
Query: 179 APDLPGPSSAPDLPGPSS-APDL--PGPSSAPDLPGPSSAPDLPGPSS 223
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 324 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 371
>gi|130502097|ref|NP_001076370.1| collagen alpha-2(VIII) chain precursor [Danio rerio]
Length = 686
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 68/173 (39%), Gaps = 15/173 (8%)
Query: 9 VFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 68
V + D P+ + P + PG P GP+ LPGP LPG P L G
Sbjct: 303 VGQKGDRGPTGLQGVPGDKGEPGLEGLPGDLGPTGQSGLPGPQGLMGLPGKPGMPGLKG- 361
Query: 69 SSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
+ P GPS P L GPS PG LPG + A PGP P G
Sbjct: 362 ENGPQ--GPSGLPGLRGDQGPSGLAGKPGLPGDKGLPGLNGATGKPGPKGEP---GHIGL 416
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPG 175
P PG AP G + PGP S P LPGP+ GP P L G
Sbjct: 417 PGNPGLIGAPGPKGENGFSGTPGPRGNSGIPGLPGPTGH---MGPQGIPGLKG 466
>gi|403266575|ref|XP_003925449.1| PREDICTED: collagen alpha-1(XXVII) chain [Saimiri boliviensis
boliviensis]
Length = 1856
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 67/200 (33%), Gaps = 3/200 (1%)
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
LPG S P PG PGP+ P PGP +P G LPGP P G
Sbjct: 691 LPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKG 750
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
LPG P G P +PG +PG GP PG P
Sbjct: 751 SRGYIGLPGLFGLPGSDGERGLPGIPGKRGKMGMPGFPGVFGERGPPGLDGNPGELGLPG 810
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
PG G PGP L G P L G +PG S P G
Sbjct: 811 PPGVPGLIGDLGVLGPIGYPGPKGMKGLMGSVGEPGLKGDKGEQGVPGVSGDPGFQGDKG 870
Query: 278 APDLPGPSSAPDLPGPSSTV 297
+ +PG A PGP V
Sbjct: 871 SQGVPGFPGARGKPGPLGKV 890
>gi|395818630|ref|XP_003782725.1| PREDICTED: collagen alpha-2(I) chain [Otolemur garnettii]
Length = 1364
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 85/241 (35%), Gaps = 39/241 (16%)
Query: 48 PGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 104
PG S AP GP+ P PG + GP+ AP G P PG + GP
Sbjct: 102 PGASGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGAPGKAGEDGHPGKPGRPGERGVVGP 161
Query: 105 SSAPDLPGPSSAPDLPG--PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
A PG P G S PD G LPG P PG + PG + A
Sbjct: 162 QGARGFPGTPGLPGFKGLRGHSGPD--GLKGQAGLPGAKGEPGSPGENG---TPGQTGAR 216
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----------------------GPSSAPDL 200
LPG PGPS A G S P P GP P
Sbjct: 217 GLPGERGRVGAPGPSGARGSDG-SVGPVGPAGPVGSAGPPGFPGAPGPKGELGPVGNPGP 275
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
GP+ GP LPG S PG A L G A LPG + AP LPGP
Sbjct: 276 AGPA------GPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGI 329
Query: 261 P 261
P
Sbjct: 330 P 330
>gi|5712087|gb|AAD47357.1|AF026801_1 alpha-3 type IX collagen [Homo sapiens]
Length = 684
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 275 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 334
Query: 107 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 151
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 335 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 382
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 275 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 334
Query: 134 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 178
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 335 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 382
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 275 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 334
Query: 179 APDLPGPSSAPDLPGPSS-APDL--PGPSSAPDLPGPSSAPDLPGPSS 223
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 335 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 382
>gi|1196421|gb|AAC41947.1| alpha-3 type IX collagen [Homo sapiens]
gi|1585906|prf||2202236A collagen:SUBUNIT=alpha3:ISOTYPE=IX
Length = 684
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 275 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 334
Query: 107 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 151
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 335 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 382
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 275 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 334
Query: 134 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 178
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 335 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 382
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 275 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 334
Query: 179 APDLPGPSSAPDLPGPSS-APDL--PGPSSAPDLPGPSSAPDLPGPSS 223
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 335 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 382
>gi|14043173|gb|AAH07574.1| Unknown (protein for IMAGE:3139559), partial [Homo sapiens]
Length = 561
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 152 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 211
Query: 107 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 151
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 212 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 259
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 152 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 211
Query: 134 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 178
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 212 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 259
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 152 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 211
Query: 179 APDLPGPSSAPDLPGPSS-APDL--PGPSSAPDLPGPSSAPDLPGPSS 223
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 212 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 259
>gi|426227338|ref|XP_004007775.1| PREDICTED: collagen alpha-2(I) chain [Ovis aries]
Length = 1364
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 66/189 (34%), Gaps = 32/189 (16%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E + GP A PG P G L G P PG P PG +
Sbjct: 150 RPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG--- 206
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---------------------- 120
PG + A LPG PGP+ A G S P P
Sbjct: 207 TPGQTGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGEL 265
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
GP P GP+ GP LPG S PG A LPG A LPG + AP
Sbjct: 266 GPVGNPGPAGPA------GPRGEVGLPGLSGPVGPPGNPGANGLPGAKGAAGLPGVAGAP 319
Query: 181 DLPGPSSAP 189
LPGP P
Sbjct: 320 GLPGPRGIP 328
>gi|395833401|ref|XP_003789725.1| PREDICTED: collagen alpha-1(IX) chain [Otolemur garnettii]
Length = 921
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 78/240 (32%), Gaps = 17/240 (7%)
Query: 50 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 109
P+S P P S P +PG G P G G GP A
Sbjct: 412 PNSCP--PARSGYPGIPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGARGPPGAQG 469
Query: 110 LPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPD 163
L G + G A L PGP P PG P GP GP P
Sbjct: 470 LRGITGIVGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAQGPRGIPG 529
Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 223
PGP LPG +PG +PG P PGP L G P +PG
Sbjct: 530 SPGPKGDTGLPGVDGRDGIPG------MPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKG 583
Query: 224 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
G + AP PG PG GP LPG GP+ AP LPG
Sbjct: 584 VAGEKGTTGAPGKPGQLGNSGKPGQQGPAGEVGPRGPRGLPGNRGEV---GPTGAPGLPG 640
>gi|449280419|gb|EMC87737.1| Collagen alpha-2(I) chain [Columba livia]
Length = 1363
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 66/174 (37%), Gaps = 24/174 (13%)
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
LPG LPG S A PGP P GPS PGP+ AP G P G
Sbjct: 874 LPGSRGERGLPGISGATGEPGPLGVAGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDG 933
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
P PG AP G AP PGPS A PGP GP+ P G
Sbjct: 934 P------PGRDGAPGFKGERGAPGSPGPSGALGAPGPHG---QVGPAGKPGNRGEPGPAG 984
Query: 200 LPGPSSA---PDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPG 247
+ GP+ A L GP GP LP GP P L G + LPG
Sbjct: 985 VVGPAGAFGPRGLAGPQ------GPRGEKGLPGDKGPRGLPGLKGHNGLQGLPG 1032
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 66/174 (37%), Gaps = 24/174 (13%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
LPG LPG S A PGP P GPS PGP+ AP G P G
Sbjct: 874 LPGSRGERGLPGISGATGEPGPLGVAGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDG 933
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 226
P PG AP G AP PGPS A PGP GP+ P G
Sbjct: 934 P------PGRDGAPGFKGERGAPGSPGPSGALGAPGPHG---QVGPAGKPGNRGEPGPAG 984
Query: 227 LPGPSSA---PDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPG 274
+ GP+ A L GP GP LP GP P L G + LPG
Sbjct: 985 VVGPAGAFGPRGLAGPQ------GPRGEKGLPGDKGPRGLPGLKGHNGLQGLPG 1032
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
LPG LPG S A PGP P GPS PGP+ AP G P G
Sbjct: 874 LPGSRGERGLPGISGATGEPGPLGVAGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDG 933
Query: 257 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
P PG AP G AP PGPS A PGP V
Sbjct: 934 P------PGRDGAPGFKGERGAPGSPGPSGALGAPGPHGQV 968
Score = 38.1 bits (87), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 68/178 (38%), Gaps = 28/178 (15%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAP 72
LP + ER LPG S A PGP P GPS PGP+ AP G P
Sbjct: 874 LPGSRGER----GLPGISGATGEPGPLGVAGPPGARGPSGPVGSPGPNGAPGEAGRDGNP 929
Query: 73 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
GP PG AP G AP PGPS A PGP GP+ P G
Sbjct: 930 GNDGP------PGRDGAPGFKGERGAPGSPGPSGALGAPGPHG---QVGPAGKPGNRGEP 980
Query: 133 SAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPG 184
+ GP+ A L GP GP LP GP P L G + LPG
Sbjct: 981 GPAGVVGPAGAFGPRGLAGPQ------GPRGEKGLPGDKGPRGLPGLKGHNGLQGLPG 1032
>gi|302836405|ref|XP_002949763.1| hypothetical protein VOLCADRAFT_90117 [Volvox carteri f.
nagariensis]
gi|300265122|gb|EFJ49315.1| hypothetical protein VOLCADRAFT_90117 [Volvox carteri f.
nagariensis]
Length = 493
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 91/286 (31%), Gaps = 21/286 (7%)
Query: 22 ERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
E+P P P P P AP P P P AP+ P P P AP
Sbjct: 194 EQPTAPKQPKAPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPEQPTAPKQPKAPKQPKAP 253
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG----------- 130
+ P P P AP+ P P P AP+ P +AP P
Sbjct: 254 EQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQP---TAPKQPKAPSSPRPPSSR 310
Query: 131 ----PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
AP P AP+ P P P AP+ P P P AP+ P
Sbjct: 311 LPLSSPKAPKQP---KAPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPEQPTAP 367
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
P P AP+ P P P AP P P P AP+ P P P
Sbjct: 368 KQPKAPKQPKAPEQPTAPKQPKAPKQPKAPRQPTAPKQPKAPKQPKAPEQPTAPKQPKAP 427
Query: 247 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
AP+ P P P AP+ P P P AP P
Sbjct: 428 KQPKAPEQPTAPKQPKAPKQPKAPEQPTAPKQPKAPKQPKAPKQPN 473
>gi|301778481|ref|XP_002924661.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-2(IV) chain-like
[Ailuropoda melanoleuca]
Length = 1731
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 72/205 (35%), Gaps = 28/205 (13%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P L G PG G + PG + P + GP PGP PG
Sbjct: 1118 PGLKGERGVAGAPGLKGFFGERGTAGEVGFPGITGVPGVQGP------PGPKGQTGFPGL 1171
Query: 87 SSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
+ L GP P LPG PG +P PG + G S LPG
Sbjct: 1172 TG---LQGPQGEPGRVGLPGDKGDYGWPGIRGSPGFPG------IRGISGLHGLPGTKGF 1222
Query: 144 PDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
P PG P PGP A D P A PGP AP G P GP +P L
Sbjct: 1223 PGSPGADIHGDPGFPGP--AGDRGDPGEANTSPGPFGAPGQKGERGEPGERGPVGSPGLQ 1280
Query: 202 G------PSSAPDLPGPSSAPDLPG 220
G PS+ PG AP + G
Sbjct: 1281 GFPGITPPSNMSGSPGDKGAPGIFG 1305
>gi|402882042|ref|XP_003904564.1| PREDICTED: collagen alpha-3(IX) chain [Papio anubis]
Length = 684
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
GP PGP P + GPS P +PG +PG G S AP GP+
Sbjct: 275 FRGPKGDLGRPGPKGIPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRSGAPGEKGPNG 334
Query: 143 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 187
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 335 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 382
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
GP PGP P + GPS P +PG +PG G S AP GP+
Sbjct: 275 FRGPKGDLGRPGPKGIPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRSGAPGEKGPNG 334
Query: 206 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 250
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 335 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 382
>gi|45383309|ref|NP_989757.1| collagen alpha-1(II) chain precursor [Gallus gallus]
gi|15546070|gb|AAK98621.1| alpha 1 type IIA collagen precursor [Gallus gallus]
Length = 1420
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 102/309 (33%), Gaps = 48/309 (15%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E PG S PGP A PG P + G P L G PG PG
Sbjct: 189 ETGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGAKGESGSPG 248
Query: 86 PSSAPDLPGPSSAPD---LPGPSSAPDLPG---------------PSSAPDLPGPSSAPD 127
+ +P GP P PGPS A G P+ AP PG +
Sbjct: 249 ENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPAGAPGFPGAPGSKG 308
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---- 183
GP+ A GP A G S P PGP+ AP PG P G + AP +
Sbjct: 309 EAGPTGAR---GPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAKGSAGAPGIAGAPG 365
Query: 184 -----------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSS 223
GP PG + GP GP AP G
Sbjct: 366 FPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAPGPAGEEGKRG 425
Query: 224 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
A PG + PG AP G L GP AP GP+ L GP A PG
Sbjct: 426 ARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAG---LAGPKGATGDPG 482
Query: 284 PSSAPDLPG 292
P LPG
Sbjct: 483 RPGEPGLPG 491
>gi|426257733|ref|XP_004022477.1| PREDICTED: collagen alpha-5(IV) chain isoform 1 [Ovis aries]
Length = 1691
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 81/218 (37%), Gaps = 42/218 (19%)
Query: 26 EPDLPGPSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
+P LPGP+ P LPGP PDL G PG P + GP LPG
Sbjct: 930 QPGLPGPAGEKGSKGEPGLPGLPGPMD-PDLLGSKGEKGDPGLPGIPGVAGPKGYQGLPG 988
Query: 77 ------------------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 118
P P LPG +PG + P L G PGP A
Sbjct: 989 DPGQPGLSGPPGLPGPSGPKGNPGLPG------MPGLTGPPGLKGNMGDMGFPGPQGA-- 1040
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA--PDLPGPSSAPDLPGPSSAPDLPGP 176
G S P +PG +P LPG PG S P LPGP P LPG P G
Sbjct: 1041 -KGSSGPPGVPGQPGSPGLPGQKGEKGDPGISGIGLPGLPGPKGEPGLPGYPGNPGTKGS 1099
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 214
LPG P PG P LPG P LPGP
Sbjct: 1100 MGETGLPG---LPGTPGAKGQPGLPGFPGTPGLPGPKG 1134
>gi|21105303|gb|AAM34601.1|AF448526_1 precollagen-D [Mytilus galloprovincialis]
Length = 922
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
G S AP PG + PG + P PG + PGPS AP PG A PGP AP
Sbjct: 313 GASGAPGRPGNPGSTGRPGATGDPGRPGATGTTGRPGPSGAPGNPGAPGALGAPGPRGAP 372
Query: 100 ---DLPGPSSAPDLPG 112
LPGP +P PG
Sbjct: 373 GFVGLPGPRGSPGEPG 388
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 49 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 108
G S AP PG + PG + P PG + PGPS AP PG A PGP AP
Sbjct: 313 GASGAPGRPGNPGSTGRPGATGDPGRPGATGTTGRPGPSGAPGNPGAPGALGAPGPRGAP 372
Query: 109 D---LPGPSSAPDLPG 121
LPGP +P PG
Sbjct: 373 GFVGLPGPRGSPGEPG 388
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
G S AP PG + PG + P PG + PGPS AP PG A PGP AP
Sbjct: 313 GASGAPGRPGNPGSTGRPGATGDPGRPGATGTTGRPGPSGAPGNPGAPGALGAPGPRGAP 372
Query: 127 D---LPGPSSAPDLPG 139
LPGP +P PG
Sbjct: 373 GFVGLPGPRGSPGEPG 388
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G S AP PG + PG + P PG + PGPS AP PG A PGP AP
Sbjct: 313 GASGAPGRPGNPGSTGRPGATGDPGRPGATGTTGRPGPSGAPGNPGAPGALGAPGPRGAP 372
Query: 136 ---DLPGPSSAPDLPG 148
LPGP +P PG
Sbjct: 373 GFVGLPGPRGSPGEPG 388
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
G S AP PG + PG + P PG + PGPS AP PG A PGP AP
Sbjct: 313 GASGAPGRPGNPGSTGRPGATGDPGRPGATGTTGRPGPSGAPGNPGAPGALGAPGPRGAP 372
Query: 163 D---LPGPSSAPDLPG 175
LPGP +P PG
Sbjct: 373 GFVGLPGPRGSPGEPG 388
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
G S AP PG + PG + P PG + PGPS AP PG A PGP AP
Sbjct: 313 GASGAPGRPGNPGSTGRPGATGDPGRPGATGTTGRPGPSGAPGNPGAPGALGAPGPRGAP 372
Query: 217 ---DLPGPSSAPDLPG 229
LPGP +P PG
Sbjct: 373 GFVGLPGPRGSPGEPG 388
>gi|426257735|ref|XP_004022478.1| PREDICTED: collagen alpha-5(IV) chain isoform 2 [Ovis aries]
Length = 1685
Score = 38.5 bits (88), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 81/218 (37%), Gaps = 42/218 (19%)
Query: 26 EPDLPGPSSA---------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
+P LPGP+ P LPGP PDL G PG P + GP LPG
Sbjct: 930 QPGLPGPAGEKGSKGEPGLPGLPGPMD-PDLLGSKGEKGDPGLPGIPGVAGPKGYQGLPG 988
Query: 77 ------------------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 118
P P LPG +PG + P L G PGP A
Sbjct: 989 DPGQPGLSGPPGLPGPSGPKGNPGLPG------MPGLTGPPGLKGNMGDMGFPGPQGA-- 1040
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA--PDLPGPSSAPDLPGPSSAPDLPGP 176
G S P +PG +P LPG PG S P LPGP P LPG P G
Sbjct: 1041 -KGSSGPPGVPGQPGSPGLPGQKGEKGDPGISGIGLPGLPGPKGEPGLPGYPGNPGTKGS 1099
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 214
LPG P PG P LPG P LPGP
Sbjct: 1100 MGETGLPG---LPGTPGAKGQPGLPGFPGTPGLPGPKG 1134
>gi|427794227|gb|JAA62565.1| Putative a2iv collagen, partial [Rhipicephalus pulchellus]
Length = 1790
Score = 38.1 bits (87), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 84/248 (33%), Gaps = 33/248 (13%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--------DLPGPSSAPD 91
GP AP GP G + A G P LPG + AP PG P
Sbjct: 404 GPQGAPGDTGPPGRDGEKGATGAMGYRGTVGEPGLPGEAGAPGPRGLAIKGEPGEDGYPG 463
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAP---DLPGPSSAPDLPGPSSAPDL 146
LPG LPGP GP PG + AP PG P +PG P
Sbjct: 464 LPGLRGQQGLPGPQ------GPVGDKGQPGLTVIGAPGEDGRPGRDGRPGIPGVRGDPGP 517
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDL 200
PG P P PD GP PG P PG PGP P +
Sbjct: 518 PGDQGTPGRGVPRPGPD--GPIGLRGPPGDQGIPGRPGVPGVDGRPGPRGDDCGYCPPGI 575
Query: 201 PGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
PG AP PGP + PG + P + G PG P LPG P G
Sbjct: 576 PGERGAPGEDGRPGPDGSIGFPGTTGPPGVKGDRG---YPGARGIPGLPGRDGEPGWDGQ 632
Query: 258 SSAPDLPG 265
LPG
Sbjct: 633 KGEKGLPG 640
Score = 38.1 bits (87), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 84/248 (33%), Gaps = 33/248 (13%)
Query: 49 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--------DLPGPSSAPD 100
GP AP GP G + A G P LPG + AP PG P
Sbjct: 404 GPQGAPGDTGPPGRDGEKGATGAMGYRGTVGEPGLPGEAGAPGPRGLAIKGEPGEDGYPG 463
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAP---DLPGPSSAPDLPGPSSAPDL 155
LPG LPGP GP PG + AP PG P +PG P
Sbjct: 464 LPGLRGQQGLPGPQ------GPVGDKGQPGLTVIGAPGEDGRPGRDGRPGIPGVRGDPGP 517
Query: 156 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDL 209
PG P P PD GP PG P PG PGP P +
Sbjct: 518 PGDQGTPGRGVPRPGPD--GPIGLRGPPGDQGIPGRPGVPGVDGRPGPRGDDCGYCPPGI 575
Query: 210 PGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
PG AP PGP + PG + P + G PG P LPG P G
Sbjct: 576 PGERGAPGEDGRPGPDGSIGFPGTTGPPGVKGDRG---YPGARGIPGLPGRDGEPGWDGQ 632
Query: 267 SSAPDLPG 274
LPG
Sbjct: 633 KGEKGLPG 640
>gi|441631274|ref|XP_004089605.1| PREDICTED: collagen alpha-2(I) chain isoform 2 [Nomascus
leucogenys]
Length = 1368
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 77/222 (34%), Gaps = 29/222 (13%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 97
GP+ P PG + GP+ P G P PG + GP A PG
Sbjct: 115 FQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPG 174
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
P G L G P PG P PG + PG + A LPG PG
Sbjct: 175 LPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG---TPGQTGARGLPGERGRVGAPG 231
Query: 158 PSSAPDLPGPSSAPDLP-GP-----------------------SSAPDLP-GPSSAPDLP 192
P+ A G S P P GP ++ P P GP LP
Sbjct: 232 PAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLP 290
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G S PG A L G A LPG + AP LPGP P
Sbjct: 291 GLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIP 332
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 77/222 (34%), Gaps = 29/222 (13%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
GP+ P PG + GP+ P G P PG + GP A PG
Sbjct: 115 FQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPG 174
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
P G L G P PG P PG + PG + A LPG PG
Sbjct: 175 LPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG---TPGQTGARGLPGERGRVGAPG 231
Query: 176 PSSAPDLPGPSSAPDLP-GP-----------------------SSAPDLP-GPSSAPDLP 210
P+ A G S P P GP ++ P P GP LP
Sbjct: 232 PAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLP 290
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
G S PG A L G A LPG + AP LPGP P
Sbjct: 291 GLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIP 332
>gi|281346766|gb|EFB22350.1| hypothetical protein PANDA_014034 [Ailuropoda melanoleuca]
Length = 1670
Score = 38.1 bits (87), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 72/205 (35%), Gaps = 28/205 (13%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P L G PG G + PG + P + GP PGP PG
Sbjct: 1073 PGLKGERGVAGAPGLKGFFGERGTAGEVGFPGITGVPGVQGP------PGPKGQTGFPGL 1126
Query: 87 SSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
+ L GP P LPG PG +P PG + G S LPG
Sbjct: 1127 TG---LQGPQGEPGRVGLPGDKGDYGWPGIRGSPGFPG------IRGISGLHGLPGTKGF 1177
Query: 144 PDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
P PG P PGP A D P A PGP AP G P GP +P L
Sbjct: 1178 PGSPGADIHGDPGFPGP--AGDRGDPGEANTSPGPFGAPGQKGERGEPGERGPVGSPGLQ 1235
Query: 202 G------PSSAPDLPGPSSAPDLPG 220
G PS+ PG AP + G
Sbjct: 1236 GFPGITPPSNMSGSPGDKGAPGIFG 1260
>gi|297681047|ref|XP_002818294.1| PREDICTED: collagen alpha-2(I) chain isoform 1 [Pongo abelii]
Length = 1366
Score = 38.1 bits (87), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 77/222 (34%), Gaps = 29/222 (13%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 97
GP+ P PG + GP+ P G P PG + GP A PG
Sbjct: 113 FQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPG 172
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
P G L G P PG P PG + PG + A LPG PG
Sbjct: 173 LPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG---TPGQTGARGLPGERGRVGAPG 229
Query: 158 PSSAPDLPGPSSAPDLP-GP-----------------------SSAPDLP-GPSSAPDLP 192
P+ A G S P P GP ++ P P GP LP
Sbjct: 230 PAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLP 288
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G S PG A L G A LPG + AP LPGP P
Sbjct: 289 GLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIP 330
Score = 38.1 bits (87), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 77/222 (34%), Gaps = 29/222 (13%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
GP+ P PG + GP+ P G P PG + GP A PG
Sbjct: 113 FQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPG 172
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
P G L G P PG P PG + PG + A LPG PG
Sbjct: 173 LPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG---TPGQTGARGLPGERGRVGAPG 229
Query: 176 PSSAPDLPGPSSAPDLP-GP-----------------------SSAPDLP-GPSSAPDLP 210
P+ A G S P P GP ++ P P GP LP
Sbjct: 230 PAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLP 288
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
G S PG A L G A LPG + AP LPGP P
Sbjct: 289 GLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIP 330
>gi|395738734|ref|XP_003777140.1| PREDICTED: collagen alpha-2(I) chain isoform 2 [Pongo abelii]
Length = 1371
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 77/222 (34%), Gaps = 29/222 (13%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 97
GP+ P PG + GP+ P G P PG + GP A PG
Sbjct: 118 FQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPG 177
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
P G L G P PG P PG + PG + A LPG PG
Sbjct: 178 LPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG---TPGQTGARGLPGERGRVGAPG 234
Query: 158 PSSAPDLPGPSSAPDLP-GP-----------------------SSAPDLP-GPSSAPDLP 192
P+ A G S P P GP ++ P P GP LP
Sbjct: 235 PAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLP 293
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G S PG A L G A LPG + AP LPGP P
Sbjct: 294 GLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIP 335
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 77/222 (34%), Gaps = 29/222 (13%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
GP+ P PG + GP+ P G P PG + GP A PG
Sbjct: 118 FQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPG 177
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
P G L G P PG P PG + PG + A LPG PG
Sbjct: 178 LPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG---TPGQTGARGLPGERGRVGAPG 234
Query: 176 PSSAPDLPGPSSAPDLP-GP-----------------------SSAPDLP-GPSSAPDLP 210
P+ A G S P P GP ++ P P GP LP
Sbjct: 235 PAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLP 293
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
G S PG A L G A LPG + AP LPGP P
Sbjct: 294 GLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIP 335
>gi|432933253|ref|XP_004081859.1| PREDICTED: collagen alpha-2(V) chain-like [Oryzias latipes]
Length = 1493
Score = 38.1 bits (87), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 102/291 (35%), Gaps = 23/291 (7%)
Query: 20 VTER--PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 77
V ER P PG A LPGP A G +S P PGP + PG P LPG
Sbjct: 498 VGERGAPGNRGFPG---ADGLPGPKGAQGDRG-TSGP--PGPKGSLGDPGRPGEPGLPGA 551
Query: 78 SSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGP 131
PG A PGP AP PGP+ + GP+ +PGP S G
Sbjct: 552 RGLTGTPGVQGAEGKPGPLGAPGEDGRPGPAGSIGNRGPAGTMGVPGPKGFSGDQGKTGE 611
Query: 132 SSAPDLPGPSSAPDLPGP------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
+ +PG P G + G PG + LPG P PG
Sbjct: 612 QGSAGVPGQRGPPGKDGEVGPAGPPGPSGVAGERGEQGPPGVNGFQGLPGNQGPPGEPGK 671
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
+PG GP +PG + L GP P PGP PGP+ A
Sbjct: 672 PGDQGIPGELGPVGQVGPRGERGIPGERGELGSSGLQGPKGIPGAPGPDGPKGSPGPTGA 731
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
GP +PG PGP G + PG A PGP
Sbjct: 732 LGDMGPPGLQGMPGERGISGPPGPKGDRGAIGEKGSEGTPGNDGARGTPGP 782
>gi|390466740|ref|XP_003733643.1| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-2(I) chain-like
[Callithrix jacchus]
Length = 1366
Score = 38.1 bits (87), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 70/189 (37%), Gaps = 14/189 (7%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E + GP A PG P G L G P PG P PG +
Sbjct: 152 RPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG--- 208
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----GPSSAPDLPGPSSAPDLP 138
PG + A LPG PGP+ A G S P P G + P PG
Sbjct: 209 TPGQTGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGEI 267
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G P + GP+ GP LPG S PG A L G A LPG + AP
Sbjct: 268 GAIGNPGIAGPA------GPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAP 321
Query: 199 DLPGPSSAP 207
LPGP P
Sbjct: 322 GLPGPRGIP 330
>gi|334350075|ref|XP_001376430.2| PREDICTED: collagen alpha-5(IV) chain-like [Monodelphis domestica]
Length = 1773
Score = 38.1 bits (87), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 115/350 (32%), Gaps = 93/350 (26%)
Query: 35 APDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 91
A PGP+ GP +P LPG P LPGP P + P++ G
Sbjct: 627 ARGFPGPNGVKGYVGATGPVGSPGLPGAPGTPGLPGPKGNPGH--TLTFPEMKGDKGDTG 684
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPG 148
PG P L G LPGP P + G + + + G LPG P LPG
Sbjct: 685 FPGAPGIPGLSGTPGQDGLPGP---PGIKGKAVSSFIVGGLGIXGERGLPGKPGLPGLPG 741
Query: 149 PS--------------SAPDLPGPSSAPDLPGPSSAPDLPGPSSA--------------- 179
G + P PG S PGP+ +
Sbjct: 742 NRGPVGPPGMGPPGPVGEKGFLGMAGNPGPPGVSGTKGDPGPTLSQPGPPGLPGLPGRDG 801
Query: 180 -------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---------------APD 217
P LPG P +PG P G P LPGP
Sbjct: 802 DVGLPGDPGLPGMPGLPGIPGSKGEPGSTG-IGLPGLPGPKGYQGMPGPPGHPGTPGRHG 860
Query: 218 LPGPSSAPDLPGPSSAP-----------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
L GPS P PGP P LPG PGP + PGPS P LPG
Sbjct: 861 LQGPSGHPGFPGPKGEPGVGLPGPPGLQGLPGLKGT---PGPRGSTGFPGPSGTPGLPGL 917
Query: 267 SSAPDLPGPSSAPDLPGPSSAP-----DLPGPSSTVLGSYLGEAGHQKSP 311
L GP P PG P D+PGP GE GHQ +P
Sbjct: 918 DG---LAGPKGLPGDPGRKGDPGPPGFDVPGPP--------GERGHQGNP 956
>gi|268552815|ref|XP_002634390.1| Hypothetical protein CBG04386 [Caenorhabditis briggsae]
Length = 594
Score = 38.1 bits (87), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 126/307 (41%), Positives = 154/307 (50%), Gaps = 60/307 (19%)
Query: 21 TERPLEPDLPGPSSAP-----DLPGPSSAP-DLPGPSSAPDLPGPSSAP-------DLPG 67
+E P D P PS+ P D P PS+ P D P PS D P PS P D P
Sbjct: 244 SEEPEPSDKPEPSAEPSEQPSDAPQPSAKPSDEPQPS---DQPEPSVEPSKDPQPSDEPQ 300
Query: 68 PSSAP-DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAP---DLPGPSSAP-DLPG 121
PS+ P D P PS + P PS+ P + P +S+P GPS P D P PS P + P
Sbjct: 301 PSAEPSDEPQPS---EQPEPSAEPSEQPSDASSPGPVGPSEEPEPSDKPEPSVEPSEDPH 357
Query: 122 PSSAP-DLPGPSSAP-DLPGPSSAPD-------LPGPSSAPDLPGPSSAP-DLPGPSSAP 171
PS+ P + P PS+ P D P PSS P+ P PS D P PS+ P D P PS
Sbjct: 358 PSAEPSEAPQPSAEPSDEPQPSSGPEPSVEPSKDPQPS---DAPQPSAEPSDEPQPS--- 411
Query: 172 DLPGPSSAP-DLPGPSSAPDLPGPSSAP---DLPGPSSAP-DLPGPSSAP-DLPGPSSAP 225
+ P PS+ P + P +S+P GPS P D P PS P + P PS+ P + P PS+ P
Sbjct: 412 EQPEPSAEPSEQPSDASSPGPVGPSEEPEPSDKPEPSVEPSEDPHPSAEPSEAPQPSAEP 471
Query: 226 -DLPGPSSAPDLPGPSSAPDL-PGPSSAPDLPGPSSAP-DLPGPSSAP-DLPGPSSAPDL 281
D P PSS P+ PS P P PS D P PS+ P D P PS+ P + P PS D
Sbjct: 472 SDEPQPSSGPE---PSVEPSKDPQPS---DAPQPSAEPSDEPEPSAEPSEAPQPS---DK 522
Query: 282 PGPSSAP 288
P PS P
Sbjct: 523 PQPSDKP 529
>gi|74004777|ref|XP_851009.1| PREDICTED: collagen alpha-1(III) chain isoform 2 [Canis lupus
familiaris]
Length = 1465
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 101/282 (35%), Gaps = 39/282 (13%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E LPGP P + GP+ P PG G + G + AP L G +
Sbjct: 238 RPGERGLPGP---PGMKGPAGMPGFPGMKGHRGFDGRNGE---KGDTGAPGLKGENG--- 288
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS------------------- 123
LPG + AP GP A PG P LPG + A G
Sbjct: 289 LPGENGAPGPMGPRGA---PGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPG 345
Query: 124 --SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
A GP+ +P G PGP PGP P G GP+ P
Sbjct: 346 SPGAKGEVGPAGSPGSNGSPGQRGEPGPQGHAGAPGPPGPPGSNGSPGGKGEMGPAGIPG 405
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
PG A PGP PG PG + A PGP G + +P +PGP
Sbjct: 406 APGLIGARGPPGPPGTNGAPGQRGGAGEPGKNGAKGEPGPRGE---RGEAGSPGIPGPKG 462
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
G +P PG + P G AP GP+ A LPG
Sbjct: 463 E---DGKDGSPGEPGANGLPGAAGERGAPGFRGPAGANGLPG 501
>gi|242016919|ref|XP_002428942.1| collagen alpha-2 precursor, putative [Pediculus humanus corporis]
gi|212513771|gb|EEB16204.1| collagen alpha-2 precursor, putative [Pediculus humanus corporis]
Length = 1569
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 66/182 (36%), Gaps = 21/182 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P L GP+ +P G + G +P L G P PG + LPGP PGP
Sbjct: 919 PGLQGPAGSPGAKGERGSNGAKGEQGSPGLAG---KPGDPGVAGLTGLPGPKGIRGEPGP 975
Query: 87 SSAPDLPGPSSAPDLPGPSS---------------APDLPGPSSAPDLPGPSSAPDLPGP 131
L GP P PG + + G + P PGP P PGP
Sbjct: 976 RGEVGLMGPMGRPGEPGTAGHTGPPGPAGAPGIPGSKGSSGDTGRPGAPGPIGHPGAPGP 1035
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
+ G +P L G PG P LPG + AP G AP G S P
Sbjct: 1036 EGSKGEQGQQGSPGLIGQPGPQGPPGDRGLPGLPGAAGAPGSRGVRGAP---GESGLPGK 1092
Query: 192 PG 193
PG
Sbjct: 1093 PG 1094
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 66/182 (36%), Gaps = 21/182 (11%)
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
P L GP+ +P G + G +P L G P PG + LPGP PGP
Sbjct: 919 PGLQGPAGSPGAKGERGSNGAKGEQGSPGLAG---KPGDPGVAGLTGLPGPKGIRGEPGP 975
Query: 132 SSAPDLPGPSSAPDLPGPSS---------------APDLPGPSSAPDLPGPSSAPDLPGP 176
L GP P PG + + G + P PGP P PGP
Sbjct: 976 RGEVGLMGPMGRPGEPGTAGHTGPPGPAGAPGIPGSKGSSGDTGRPGAPGPIGHPGAPGP 1035
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
+ G +P L G PG P LPG + AP G A PG S P
Sbjct: 1036 EGSKGEQGQQGSPGLIGQPGPQGPPGDRGLPGLPGAAGAPGSRGVRGA---PGESGLPGK 1092
Query: 237 PG 238
PG
Sbjct: 1093 PG 1094
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 66/182 (36%), Gaps = 21/182 (11%)
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
P L GP+ +P G + G +P L G P PG + LPGP PGP
Sbjct: 919 PGLQGPAGSPGAKGERGSNGAKGEQGSPGLAG---KPGDPGVAGLTGLPGPKGIRGEPGP 975
Query: 186 SSAPDLPGPSSAPDLPGPSS---------------APDLPGPSSAPDLPGPSSAPDLPGP 230
L GP P PG + + G + P PGP P PGP
Sbjct: 976 RGEVGLMGPMGRPGEPGTAGHTGPPGPAGAPGIPGSKGSSGDTGRPGAPGPIGHPGAPGP 1035
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
+ G +P L G PG P LPG + AP G AP G S P
Sbjct: 1036 EGSKGEQGQQGSPGLIGQPGPQGPPGDRGLPGLPGAAGAPGSRGVRGAP---GESGLPGK 1092
Query: 291 PG 292
PG
Sbjct: 1093 PG 1094
>gi|206597434|ref|NP_001073182.2| collagen alpha-2(I) chain precursor [Gallus gallus]
Length = 1363
Score = 38.1 bits (87), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 209 LPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 263
LPG LPG + A PGP S P GPS PGP+ AP G P
Sbjct: 874 LPGSRGERGLPGIAGATGEPGPLGVSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDG 933
Query: 264 -PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
PG AP G AP PGPS A PGP V
Sbjct: 934 PPGRDGAPGFKGERGAPGNPGPSGALGAPGPHGQV 968
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.307 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,243,971,945
Number of Sequences: 23463169
Number of extensions: 690058010
Number of successful extensions: 11840177
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 13578
Number of HSP's successfully gapped in prelim test: 64155
Number of HSP's that attempted gapping in prelim test: 5346876
Number of HSP's gapped (non-prelim): 1467088
length of query: 448
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 302
effective length of database: 8,933,572,693
effective search space: 2697938953286
effective search space used: 2697938953286
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 78 (34.7 bits)