BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16323
(448 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9GLP1|FA5_PIG Coagulation factor V OS=Sus scrofa GN=F5 PE=2 SV=1
Length = 2258
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 151/286 (52%), Gaps = 3/286 (1%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
+++ L PDL + +PDL + +PDL + +PDL + +PDL + +PDL +
Sbjct: 1200 LSQTTLSPDLSHTTLSPDLGHTTLSPDLSHTTLSPDLSQTTLSPDLSHTTLSPDLGHTTL 1259
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+PDL + +PDL + +PDL + +PDL + +PDL + +PD + +PDL
Sbjct: 1260 SPDLSHTTLSPDLGHATLSPDLSHTTLSPDLGHTTLSPDLGHTTLSPDFSQTTLSPDLGH 1319
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
+ + D+ + +PDL + +PDL + +PDL + +PDL + +PDL + +PD
Sbjct: 1320 TTLSSDVSHTTLSPDLSHTTLSPDLSHTTLSPDLGHTTLSPDLSQTTLSPDLGHMTLSPD 1379
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
L + +PDL + +PDL + +PDL + +PDL + + D + +PDL +
Sbjct: 1380 LSHTTLSPDLGHTTLSPDLSHTTLSPDLGHMTLSPDLGQTTLSLDFGQTTLSPDLSHMTL 1439
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEA 305
+ +L + +PDL + +PDL +PDL T L S L E
Sbjct: 1440 SSELSHETLSPDLSQVTLSPDLSEIPFSPDLW---QTTLSSDLNET 1482
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 146/270 (54%), Gaps = 2/270 (0%)
Query: 22 ERPLEPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSA 80
R PDL S +P+L + +PD PG + +PDL + +PDL + +PDL + +
Sbjct: 1166 HRTTSPDLNQTSLSPELSQTTLSPD-PGHVTLSPDLSQTTLSPDLSHTTLSPDLGHTTLS 1224
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
PDL + +PDL + +PDL + +PDL + +PDL + +PDL + +PDL
Sbjct: 1225 PDLSHTTLSPDLSQTTLSPDLSHTTLSPDLGHTTLSPDLSHTTLSPDLGHATLSPDLSHT 1284
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ +PDL + +PDL + +PD + +PDL + + D+ + +PDL + +PDL
Sbjct: 1285 TLSPDLGHTTLSPDLGHTTLSPDFSQTTLSPDLGHTTLSSDVSHTTLSPDLSHTTLSPDL 1344
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
+ +PDL + +PDL + +PDL + +PDL + +PDL + +PDL + +
Sbjct: 1345 SHTTLSPDLGHTTLSPDLSQTTLSPDLGHMTLSPDLSHTTLSPDLGHTTLSPDLSHTTLS 1404
Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
PDL + +PDL + + D + +PDL
Sbjct: 1405 PDLGHMTLSPDLGQTTLSLDFGQTTLSPDL 1434
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 148/272 (54%), Gaps = 2/272 (0%)
Query: 20 VTERPLEPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 78
+++ L PD PG + +PDL + +PDL + +PDL + +PDL + +PDL +
Sbjct: 1182 LSQTTLSPD-PGHVTLSPDLSQTTLSPDLSHTTLSPDLGHTTLSPDLSHTTLSPDLSQTT 1240
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
+PDL + +PDL + +PDL + +PDL + +PDL + +PDL + +PDL
Sbjct: 1241 LSPDLSHTTLSPDLGHTTLSPDLSHTTLSPDLGHATLSPDLSHTTLSPDLGHTTLSPDLG 1300
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
+ +PD + +PDL + + D+ + +PDL + +PDL + +PDL + +P
Sbjct: 1301 HTTLSPDFSQTTLSPDLGHTTLSSDVSHTTLSPDLSHTTLSPDLSHTTLSPDLGHTTLSP 1360
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
DL + +PDL + +PDL + +PDL + +PDL + +PDL + +PDL +
Sbjct: 1361 DLSQTTLSPDLGHMTLSPDLSHTTLSPDLGHTTLSPDLSHTTLSPDLGHMTLSPDLGQTT 1420
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
+ D + +PDL + + +L + +PDL
Sbjct: 1421 LSLDFGQTTLSPDLSHMTLSSELSHETLSPDL 1452
Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 125/238 (52%)
Query: 25 LEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 84
L PDL + +PDL + +PDL + +PDL + +PDL + +PD + +PDL
Sbjct: 1259 LSPDLSHTTLSPDLGHATLSPDLSHTTLSPDLGHTTLSPDLGHTTLSPDFSQTTLSPDLG 1318
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
+ + D+ + +PDL + +PDL + +PDL + +PDL + +PDL + +P
Sbjct: 1319 HTTLSSDVSHTTLSPDLSHTTLSPDLSHTTLSPDLGHTTLSPDLSQTTLSPDLGHMTLSP 1378
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
DL + +PDL + +PDL + +PDL + +PDL + + D + +PDL +
Sbjct: 1379 DLSHTTLSPDLGHTTLSPDLSHTTLSPDLGHMTLSPDLGQTTLSLDFGQTTLSPDLSHMT 1438
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
+ +L + +PDL + +PDL +PDL + + DL + +PDL S PD
Sbjct: 1439 LSSELSHETLSPDLSQVTLSPDLSEIPFSPDLWQTTLSSDLNETTLSPDLRQTSPHPD 1496
>sp|Q28107|FA5_BOVIN Coagulation factor V OS=Bos taurus GN=F5 PE=1 SV=1
Length = 2211
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 101/259 (38%), Positives = 141/259 (54%), Gaps = 4/259 (1%)
Query: 25 LEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDL 83
LE ++ +++ DL PS +PDL + +PD PG S +PDL S +PDL S +PDL
Sbjct: 1180 LELEVWQTATSLDLSQPSISPDLGQMALSPD-PGQESLSPDLGQTSLSPDLSQESLSPDL 1238
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSS 142
+ +PD S +PDL + +PD S +PDL + +PD PG S +PDL S
Sbjct: 1239 GQTALSPDPSQESLSPDLGQTALSPDPSQESLSPDLGQTALSPD-PGQESLSPDLGQTSL 1297
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+PDL S +PDL + +PD S +PDL + +PD S +PDL S +PDL
Sbjct: 1298 SPDLSQESLSPDLGQTALSPDPSQESLSPDLGQTALSPDPSQESLSPDLGQTSLSPDLGQ 1357
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
S +PDL + +PD S +PDL S +PDL S +PDL + +PDL S +PD
Sbjct: 1358 ESLSPDLGQTALSPDPSQESLSPDLGQTSLSPDLGQESLSPDLGQTALSPDLSQESLSPD 1417
Query: 263 LPGPSSAPDLPGPSSAPDL 281
L +PDL S +PDL
Sbjct: 1418 LGQTPLSPDLSLESLSPDL 1436
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 101/261 (38%), Positives = 141/261 (54%), Gaps = 4/261 (1%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAP 90
PS ++ +++ DL PS +PDL + +PD PG S +PDL S +PDL S +P
Sbjct: 1178 PSLELEVWQTATSLDLSQPSISPDLGQMALSPD-PGQESLSPDLGQTSLSPDLSQESLSP 1236
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGP 149
DL + +PD S +PDL + +PD S +PDL + +PD PG S +PDL
Sbjct: 1237 DLGQTALSPDPSQESLSPDLGQTALSPDPSQESLSPDLGQTALSPD-PGQESLSPDLGQT 1295
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
S +PDL S +PDL + +PD S +PDL + +PD S +PDL S +PDL
Sbjct: 1296 SLSPDLSQESLSPDLGQTALSPDPSQESLSPDLGQTALSPDPSQESLSPDLGQTSLSPDL 1355
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
S +PDL + +PD S +PDL S +PDL S +PDL + +PDL S +
Sbjct: 1356 GQESLSPDLGQTALSPDPSQESLSPDLGQTSLSPDLGQESLSPDLGQTALSPDLSQESLS 1415
Query: 270 PDLPGPSSAPDLPGPSSAPDL 290
PDL +PDL S +PDL
Sbjct: 1416 PDLGQTPLSPDLSLESLSPDL 1436
>sp|P27393|CO4A2_ASCSU Collagen alpha-2(IV) chain OS=Ascaris suum PE=2 SV=1
Length = 1763
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 125/317 (39%), Gaps = 48/317 (15%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 73
P + E+ L P LPG P PGP AP PG LPG AP LPG P
Sbjct: 1075 PGLMGEKGL-PGLPGKPGRPGAPGPKGLDGAPGFPGLKGEAGLPG---APGLPGQDGLPG 1130
Query: 74 LPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSS--- 124
LPG S P PG P LPG AP + G + P LPG LPG
Sbjct: 1131 LPGQKGESGFPGQPGLVGPPGLPGKMGAPGIRGEKGDAGLPGLPGERGLDGLPGQKGEAG 1190
Query: 125 ---APDLPGP------SSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPD 172
AP LPGP + AP PG P LPG P + G + P PG P
Sbjct: 1191 FPGAPGLPGPVGPKGSAGAPGFPGLKGEPGLPGLEGQPGPRGMKGEAGLPGAPGRDGLPG 1250
Query: 173 LPGPSSAPDLP--------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
LPG LP G + P LPG P LPG P PG + A +
Sbjct: 1251 LPGMKGEAGLPGLPGQPGKSITGPKGNAGLPGLPGKDGLPGLPGLKGEPGKPGYAGAAGI 1310
Query: 219 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GP 275
G P +PG P L S P G P PGP+ P LPG LP GP
Sbjct: 1311 KGEPGLPGIPGAKGEPGL---SGIPGKRGNDGIPGKPGPAGLPGLPGMKGESGLPGPQGP 1367
Query: 276 SSAPDLPGPSSAPDLPG 292
+ P LPG P LPG
Sbjct: 1368 AGLPGLPGLKGEPGLPG 1384
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 111/288 (38%), Gaps = 41/288 (14%)
Query: 27 PDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP------ 77
P LPG AP + G + P LPG LPG PG AP LPGP
Sbjct: 1150 PGLPGKMGAPGIRGEKGDAGLPGLPGERGLDGLPGQKGEAGFPG---APGLPGPVGPKGS 1206
Query: 78 SSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---- 130
+ AP PG P LPG P + G + P PG P LPG LPG
Sbjct: 1207 AGAPGFPGLKGEPGLPGLEGQPGPRGMKGEAGLPGAPGRDGLPGLPGMKGEAGLPGLPGQ 1266
Query: 131 ----------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
+ P LPG P LPG P PG + A + G P +PG P
Sbjct: 1267 PGKSITGPKGNAGLPGLPGKDGLPGLPGLKGEPGKPGYAGAAGIKGEPGLPGIPGAKGEP 1326
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
L S P G P PGP+ P LPG LPGP GP+ P LPG
Sbjct: 1327 GL---SGIPGKRGNDGIPGKPGPAGLPGLPGMKGESGLPGPQ------GPAGLPGLPGLK 1377
Query: 241 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
P LPG P G + P PG P + G S P PG AP
Sbjct: 1378 GEPGLPG---FPGQKGETGFPGQPGIPGLPGMKGDSGYPGAPGRDGAP 1422
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 114/317 (35%), Gaps = 59/317 (18%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P LPG G + P +PG AP +PG LPG P + G LPG
Sbjct: 968 PGLPGAPGQKGEQGLAGLPGIPGMKGAPGIPGAPGQDGLPG---LPGVKGDRGFNGLPGE 1024
Query: 87 SSAPD---LPGPSSAPDLPGP--------------------------SSAPDLPGPSSAP 117
P G P LPG AP L G P
Sbjct: 1025 KGEPGPAARDGEKGEPGLPGQPGLRGPQGPPGLPGLPGLKGDEGQPGYGAPGLMGEKGLP 1084
Query: 118 DLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAP 171
LPG P PGP AP PG LPG AP LPG P LPG S P
Sbjct: 1085 GLPGKPGRPGAPGPKGLDGAPGFPGLKGEAGLPG---APGLPGQDGLPGLPGQKGESGFP 1141
Query: 172 DLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
PG P LPG AP + G + P LPG LPG PG AP LP
Sbjct: 1142 GQPGLVGPPGLPGKMGAPGIRGEKGDAGLPGLPGERGLDGLPGQKGEAGFPG---APGLP 1198
Query: 229 GP------SSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAP 279
GP + AP PG P LPG P + G + P PG P LPG
Sbjct: 1199 GPVGPKGSAGAPGFPGLKGEPGLPGLEGQPGPRGMKGEAGLPGAPGRDGLPGLPGMKGEA 1258
Query: 280 DLPGPSSAPDLPGPSST 296
LPG P PG S T
Sbjct: 1259 GLPG---LPGQPGKSIT 1272
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 110/305 (36%), Gaps = 56/305 (18%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
V E L P PG P LPGP PG AP L GP+ P LPG P LPG
Sbjct: 719 VPESQLRPGPPGKDGLPGLPGPKGEAGFPG---APGLQGPAGLPGLPGMKGNPGLPG--- 772
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--------------A 125
AP L G P G + P LPG + A G P LPGP
Sbjct: 773 APGLAGLPGIPGEKGIAGKPGLPGLTGAKGEAGYPGQPGLPGPKGEPGPSTTGPPGPPGF 832
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG- 184
P L G P PG P L G P +PG LPG + AP PG P LPG
Sbjct: 833 PGLKGKDGIPGAPG---LPGLEGQRGLPGVPGQKGEIGLPGLAGAPGFPGAKGEPGLPGL 889
Query: 185 --------------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------- 220
P G P LPG S + G + P +PG
Sbjct: 890 PGKEGPQGPPGQPGAPGFPGQKGDEGLPGLPGVSG---MKGDTGLPGVPGLAGPPGQPGF 946
Query: 221 --PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 278
P PG + A G + P LPG G + P +PG AP +PG
Sbjct: 947 PGQKGQPGFPGVAGA---KGEAGLPGLPGAPGQKGEQGLAGLPGIPGMKGAPGIPGAPGQ 1003
Query: 279 PDLPG 283
LPG
Sbjct: 1004 DGLPG 1008
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 111/327 (33%), Gaps = 78/327 (23%)
Query: 14 DYLPSTVTER--PLEPDLPGP------SSAPDLPGPSSAPDLPGPSSAPD---LPGPSSA 62
D LP E P P LPGP + AP PG P LPG P + G +
Sbjct: 1180 DGLPGQKGEAGFPGAPGLPGPVGPKGSAGAPGFPGLKGEPGLPGLEGQPGPRGMKGEAGL 1239
Query: 63 PDLPGPSSAPDLPGPSSAPDLPG--------------PSSAPDLPGPSSAPDLPGPSSAP 108
P PG P LPG LPG + P LPG P LPG P
Sbjct: 1240 PGAPGRDGLPGLPGMKGEAGLPGLPGQPGKSITGPKGNAGLPGLPGKDGLPGLPGLKGEP 1299
Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 168
PG + A + G P +PG P L S P G P PGP+ P LPG
Sbjct: 1300 GKPGYAGAAGIKGEPGLPGIPGAKGEPGL---SGIPGKRGNDGIPGKPGPAGLPGLPGMK 1356
Query: 169 SAPDLPGP---SSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSAPDLP 219
LPGP + P LPG P LPG + P PG P + G S P P
Sbjct: 1357 GESGLPGPQGPAGLPGLPGLKGEPGLPGFPGQKGETGFPGQPGIPGLPGMKGDSGYPGAP 1416
Query: 220 GPSSAPDLP-----------------------GPSSAPDLPGPSSAPDLP---------- 246
G AP GP AP + G P L
Sbjct: 1417 GRDGAPGKQGEPGPMGPPGAQPIVQRGEKGEMGPMGAPGIRGEKGLPGLDGLPGPSGPPG 1476
Query: 247 --------GPSSAPDLPGPSSAPDLPG 265
G P +PG AP LPG
Sbjct: 1477 FAGAKGRDGFPGQPGMPGEKGAPGLPG 1503
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 109/335 (32%), Gaps = 83/335 (24%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------------ 85
+PG P L G P +PG LPG + AP PG P LPG
Sbjct: 841 IPGAPGLPGLEGQRGLPGVPGQKGEIGLPGLAGAPGFPGAKGEPGLPGLPGKEGPQGPPG 900
Query: 86 ---------PSSAPDLPGPSSAPDLPGPSSAPDLPG------------PSSAPDLPGPSS 124
LPG + G + P +PG P PG +
Sbjct: 901 QPGAPGFPGQKGDEGLPGLPGVSGMKGDTGLPGVPGLAGPPGQPGFPGQKGQPGFPGVAG 960
Query: 125 A------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPD----- 172
A P LPG G + P +PG AP +PG LPG P D
Sbjct: 961 AKGEAGLPGLPGAPGQKGEQGLAGLPGIPGMKGAPGIPGAPGQDGLPGLPGVKGDRGFNG 1020
Query: 173 LPGPSSAPD---LPGPSSAPDLPGP--------------------------SSAPDLPGP 203
LPG P G P LPG AP L G
Sbjct: 1021 LPGEKGEPGPAARDGEKGEPGLPGQPGLRGPQGPPGLPGLPGLKGDEGQPGYGAPGLMGE 1080
Query: 204 SSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GP 257
P LPG P PGP AP PG LPG AP LPG P LP G
Sbjct: 1081 KGLPGLPGKPGRPGAPGPKGLDGAPGFPGLKGEAGLPG---APGLPGQDGLPGLPGQKGE 1137
Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
S P PG P LPG AP + G LPG
Sbjct: 1138 SGFPGQPGLVGPPGLPGKMGAPGIRGEKGDAGLPG 1172
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 101/370 (27%), Positives = 116/370 (31%), Gaps = 99/370 (26%)
Query: 16 LPSTVTERPL--EPDLPGPSSAPDLPGPSSAPDLPGPSSAP------------------- 54
LP E+ + +P LPG + A G P LPGP P
Sbjct: 779 LPGIPGEKGIAGKPGLPGLTGAKGEAGYPGQPGLPGPKGEPGPSTTGPPGPPGFPGLKGK 838
Query: 55 -DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------- 103
+PG P L G P +PG LPG + AP PG P LPG
Sbjct: 839 DGIPGAPGLPGLEGQRGLPGVPGQKGEIGLPGLAGAPGFPGAKGEPGLPGLPGKEGPQGP 898
Query: 104 -----------PSSAPDLPGPSSAPDLPGPSSAPDLPG------------PSSAPDLPGP 140
LPG + G + P +PG P PG
Sbjct: 899 PGQPGAPGFPGQKGDEGLPGLPGVSGMKGDTGLPGVPGLAGPPGQPGFPGQKGQPGFPGV 958
Query: 141 SSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
+ A P LPG G + P +PG AP +PG LPG P + G
Sbjct: 959 AGAKGEAGLPGLPGAPGQKGEQGLAGLPGIPGMKGAPGIPGAPGQDGLPG---LPGVKGD 1015
Query: 195 SSAPDLPGPSSAPD---LPGPSSAPDLPGP--------------------------SSAP 225
LPG P G P LPG AP
Sbjct: 1016 RGFNGLPGEKGEPGPAARDGEKGEPGLPGQPGLRGPQGPPGLPGLPGLKGDEGQPGYGAP 1075
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
L G P LPG P PGP AP PG LPG AP LPG P LP
Sbjct: 1076 GLMGEKGLPGLPGKPGRPGAPGPKGLDGAPGFPGLKGEAGLPG---APGLPGQDGLPGLP 1132
Query: 283 GPSSAPDLPG 292
G PG
Sbjct: 1133 GQKGESGFPG 1142
>sp|Q6UXY8|TMC5_HUMAN Transmembrane channel-like protein 5 OS=Homo sapiens GN=TMC5 PE=2
SV=3
Length = 1006
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 93/229 (40%), Gaps = 5/229 (2%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
PD+PGP + PD PG S P + PD PG + P+ P S PD G S
Sbjct: 36 PDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSAAS 95
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
++PD P PD S P S PD PG PD G SS+ + G + PD
Sbjct: 96 RTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDH 155
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD-LPGPSSAPDLPGPSS 205
G S PD PG S D PGP + +L P S +L S + PD PG
Sbjct: 156 FG-SLEPDYPGAQSNSDHPGPRA--NLNHPGSRKNLEHTSFRINPYADSLGKPDYPGADI 212
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
P+ P PD P +LP PD + D G S P +
Sbjct: 213 QPNSPPFFGEPDYPSAEDNQNLPSTWREPDYSDAENGHDY-GSSETPKM 260
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 62/158 (39%), Gaps = 5/158 (3%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EPD S P S PD PG PD G SS+ + G + PD G S PD PG
Sbjct: 107 EPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDHFG-SLEPDYPG 165
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD-LPGPSSAPDLPGPSSAPDLPGPSSAP 144
S D PGP + +L P S +L S + PD PG P+ P P
Sbjct: 166 AQSNSDHPGPRA--NLNHPGSRKNLEHTSFRINPYADSLGKPDYPGADIQPNSPPFFGEP 223
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
D P +LP PD + D G S P +
Sbjct: 224 DYPSAEDNQNLPSTWREPDYSDAENGHDY-GSSETPKM 260
>sp|Q06852|SLAP1_CLOTH Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=olpB PE=4 SV=2
Length = 2313
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 136/323 (42%), Positives = 150/323 (46%), Gaps = 54/323 (16%)
Query: 28 DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGP 77
D P PS P D P PS P D P PS P+ P P+ P D P PS P D P P
Sbjct: 1386 DEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTP 1445
Query: 78 SSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPD 127
S P D P PS P+ P P+ P D P PS P D P PS P D P PS P+
Sbjct: 1446 SDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPE 1505
Query: 128 LPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSA 179
P P+ P D P PS P D P PS P D P PS P+ P P+ P D P PS
Sbjct: 1506 EPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDE 1565
Query: 180 P---DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---D 226
P D P PS P D P PS P D P PS P+ P P+ P D P PS P D
Sbjct: 1566 PTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSD 1625
Query: 227 LPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPS 276
P PS P D P PS P D P PS P+ P P+ P D P PS P D P PS
Sbjct: 1626 EPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPS 1685
Query: 277 SAP---DLPGPSSAPDLPGPSST 296
P D P PS P+ P P+ T
Sbjct: 1686 DEPTPSDEPTPSETPEEPIPTDT 1708
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 149/319 (46%), Gaps = 52/319 (16%)
Query: 28 DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGP 77
D P PS P D P PS P+ P P+ P D P PS P D P PS P D P P
Sbjct: 1398 DEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTP 1457
Query: 78 SSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLP 129
S P+ P P+ P D P PS P D P PS P D P PS P+ P P+ P D P
Sbjct: 1458 SETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEP 1517
Query: 130 GPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSA 179
PS P D P PS P D P PS P+ P P+ P D P PS P D P PS
Sbjct: 1518 TPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDE 1577
Query: 180 P---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---D 226
P D P PS P D P PS P+ P P+ P D P PS P D P PS P D
Sbjct: 1578 PTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSD 1637
Query: 227 LPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPS 276
P PS P D P PS P+ P P+ P D P PS P D P PS P D P PS
Sbjct: 1638 EPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPS 1697
Query: 277 SAPDLPGPSSAP-DLPGPS 294
P+ P P+ P D P PS
Sbjct: 1698 ETPEEPIPTDTPSDEPTPS 1716
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 137/325 (42%), Positives = 151/325 (46%), Gaps = 55/325 (16%)
Query: 27 PDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPG 76
P+ P P+ P D P PS P D P PS P D P PS P D P PS P+ P
Sbjct: 1547 PEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPI 1606
Query: 77 PSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP 126
P+ P D P PS P D P PS P D P PS P D P PS P+ P P+ P
Sbjct: 1607 PTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTP 1666
Query: 127 -DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPG 175
D P PS P D P PS P D P PS P+ P P+ P D P PS P D P
Sbjct: 1667 SDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPT 1726
Query: 176 PSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP 225
PS P D P PS P+ P P+ P D P PS P D P PS P D P PS P
Sbjct: 1727 PSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETP 1786
Query: 226 DLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSS 277
+ P P+ P D P PS P D P PS P D P PS P+ P P+ P D P PS
Sbjct: 1787 EEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSD 1846
Query: 278 AP---DLPGPSSAP---DLPGPSST 296
P D P PS P D P PS T
Sbjct: 1847 EPTPSDEPTPSDEPTPSDEPTPSET 1871
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 123/291 (42%), Positives = 135/291 (46%), Gaps = 48/291 (16%)
Query: 28 DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGP 77
D P PS P D P PS P+ P P+ P D P PS P D P PS P D P P
Sbjct: 1723 DEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTP 1782
Query: 78 SSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLP 129
S P+ P P+ P D P PS P D P PS P D P PS P+ P P+ P D P
Sbjct: 1783 SETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEP 1842
Query: 130 GPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSA 179
PS P D P PS P D P PS P+ P P+ P D P PS P D P PS
Sbjct: 1843 TPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDE 1902
Query: 180 P---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP---D 226
P D P PS P+ P P+ P D P PS P D P PS P D P PS P D
Sbjct: 1903 PTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSD 1962
Query: 227 LPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP 270
P PS P+ P P+ P D P PS P D P PS P D P PS P
Sbjct: 1963 EPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEP 2013
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 114/271 (42%), Positives = 126/271 (46%), Gaps = 45/271 (16%)
Query: 27 PDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPS 78
P+ P P+ P D P PS P D P PS P D P PS P+ P P+ P D P PS
Sbjct: 1743 PEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPS 1802
Query: 79 SAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP-- 126
P D P PS P D P PS P+ P P+ P D P PS P D P PS P
Sbjct: 1803 DEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTP 1862
Query: 127 -DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSS 178
D P PS P+ P P+ P D P PS P D P PS P D P PS P+ P P+
Sbjct: 1863 SDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTD 1922
Query: 179 AP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DL 227
P D P PS P D P PS P D P PS P D P PS P+ P P+ P D
Sbjct: 1923 TPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDE 1982
Query: 228 PGPSSAP---DLPGPSSAP---DLPGPSSAP 252
P PS P D P PS P D P PS P
Sbjct: 1983 PTPSDEPTPSDEPTPSDEPTPSDEPTPSDEP 2013
Score = 38.9 bits (89), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 73/156 (46%), Gaps = 27/156 (17%)
Query: 28 DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSA 80
D P PS P+ P P+ P D P PS P D P PS P D P PS P+ P P+
Sbjct: 1864 DEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDT 1923
Query: 81 P-DLPGPSSAP---DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLP 129
P D P PS P D P PS P D P PS P D P PS P+ P P+ P D P
Sbjct: 1924 PSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEP 1983
Query: 130 GPSSAPDLPGPSSAP---DLPGPSSAP---DLPGPS 159
PS D P PS P D P PS P D P PS
Sbjct: 1984 TPS---DEPTPSDEPTPSDEPTPSDEPTPSDEPTPS 2016
>sp|P02462|CO4A1_HUMAN Collagen alpha-1(IV) chain OS=Homo sapiens GN=COL4A1 PE=1 SV=3
Length = 1669
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 111/302 (36%), Gaps = 49/302 (16%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 83
P + G S P LPG AP +PG P S ++ G P PGP AP LPG
Sbjct: 851 PGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDHGF 910
Query: 84 PG---PSSAPDLPGPSSAPDLPGPSSAPDL------------------------------ 110
PG P P L G LPG + D
Sbjct: 911 PGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSRGD 970
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
PG P G + P PGP P + G AP LPGP + P PG P +
Sbjct: 971 PGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 1030
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PGP +P LPG A G + P + P L G + G +P G +
Sbjct: 1031 PGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGIAGFPGSPGEKGEKGS 1086
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
+PG +P L G + PG +P LPG LPG P + G + P PGP
Sbjct: 1087 IGIPGMPGSPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGP 1143
Query: 285 SS 286
+
Sbjct: 1144 TG 1145
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 103/282 (36%), Gaps = 25/282 (8%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
D+PGP G P + G S P LPG AP +PG PG + G
Sbjct: 837 DMPGPKGDK---GAQGLPGITGQSGLPGLPGQQGAPGIPG------FPGSKGEMGVMGTP 887
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
P PGP AP LPG PG P P L G LPG + D S
Sbjct: 888 GQPGSPGPVGAPGLPGEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMK 947
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLP 201
G GP G P +PG + P PGP P + G AP LP
Sbjct: 948 GQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLP 1007
Query: 202 GPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
GP + P PG P +PGP +P LPG A G + P + P L
Sbjct: 1008 GPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLR 1063
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
G + G +P G + +PG +P L G +V
Sbjct: 1064 GEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSV 1105
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 94/243 (38%), Gaps = 26/243 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PGP P + G AP LPGP LPG +PG +PGP +P
Sbjct: 985 QPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPG------IPGPQGSPG 1038
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG A G + P + P L G + G +P G + +PG
Sbjct: 1039 LPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPG 1094
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+P L G + PG +P LPG LPG P + G + P PGP+ G
Sbjct: 1095 SPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPT------G 1145
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P+ PG P G P LPG P PG A G PG + +P
Sbjct: 1146 PAGQKGEPGSDGIPGSAGEKGEPGLPG-RGFPGFPG---AKGDKGSKGEVGFPGLAGSPG 1201
Query: 263 LPG 265
+PG
Sbjct: 1202 IPG 1204
>sp|Q96P44|COLA1_HUMAN Collagen alpha-1(XXI) chain OS=Homo sapiens GN=COL21A1 PE=2 SV=1
Length = 957
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 99/291 (34%), Gaps = 20/291 (6%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +P L GP P LPG P PG P G + P +PG PG A L
Sbjct: 448 PGKPGLQGPKGDPGLPGNPGYPGQPGQDGKPGYQGIAGTPGVPGS------PGIQGARGL 501
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
PG P G LPG +PG G +P G A G +
Sbjct: 502 PGYKGEPGRDGDKGDRGLPGFPGLHGMPGSKGEMGAKGDKGSPGFYGKKGAKGEKGNAGF 561
Query: 144 PDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
P LPGP+ P G +P G + +P PG PG P PG
Sbjct: 562 PGLPGPAGEPGRHGKDGLMGSPGFKGEAGSPGAPGQDGTRGEPG---IPGFPGNRGLMGQ 618
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
G P G AP +PG + PG P G P + G +PG S
Sbjct: 619 KGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSKGEPGIQG------MPGASGL 672
Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSP 311
PG + +P PG P + G G + GE G Q P
Sbjct: 673 KGEPGATGSPGEPGYMGLPGIQGKKGDKGNQGEKG--IQGQKGENGRQGIP 721
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 101/290 (34%), Gaps = 27/290 (9%)
Query: 34 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 93
P L GP P LPG P PG P G + P +PG PG A LP
Sbjct: 449 GKPGLQGPKGDPGLPGNPGYPGQPGQDGKPGYQGIAGTPGVPGS------PGIQGARGLP 502
Query: 94 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 153
G P G LPG +PG G +P G A G + P
Sbjct: 503 GYKGEPGRDGDKGDRGLPGFPGLHGMPGSKGEMGAKGDKGSPGFYGKKGAKGEKGNAGFP 562
Query: 154 DLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
LPGP+ P G +P G + +P PG PG P PG
Sbjct: 563 GLPGPAGEPGRHGKDGLMGSPGFKGEAGSPGAPGQDGTRGEPG---IPGFPGNRGLMGQK 619
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
G P G AP +PG + PG P G P + G +PG S
Sbjct: 620 GEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSKGEPGIQG------MPGASGLK 673
Query: 271 DLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPAQ 320
PG + +P PG P + G G+ G+Q KG++ + +
Sbjct: 674 GEPGATGSPGEPGYMGLPGIQGKK--------GDKGNQ-GEKGIQGQKGE 714
>sp|P02463|CO4A1_MOUSE Collagen alpha-1(IV) chain OS=Mus musculus GN=Col4a1 PE=2 SV=4
Length = 1669
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 116/328 (35%), Gaps = 50/328 (15%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 83
P L G S P LPG P +PG P S ++ G P PGP+ P LPG L
Sbjct: 851 PGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGTPGLPGEKGDHGL 910
Query: 84 PG---PSSAPDLPGPSS---APDLPGPSSAPDL--------------------------- 110
PG P P G P +PG D+
Sbjct: 911 PGSSGPRGDPGFKGDKGDVGLPGMPGSMEHVDMGSMKGQKGDQGEKGQIGPTGDKGSRGD 970
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
PG P G + P PGP P L G +P LPGP + P PG P +
Sbjct: 971 PGTPGVPGKDGQAGHPGQPGPKGDPGLSGTPGSPGLPGPKGSVGGMGLPGSPGEKGVPGI 1030
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PG P PG A G S P + P PG L G +P G +
Sbjct: 1031 PGSQGVPGSPGEKGAKGEKGQSGLPGI----GIPGRPGDKGDQGLAGFPGSPGEKGEKGS 1086
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
PG P PGP +P G +P LPG LPG P + G + P PGP
Sbjct: 1087 AGTPG---MPGSPGPRGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGTPGP 1143
Query: 285 SSAPDLPG-PSSTVLGSYLGEAGHQKSP 311
+ G P S + GE G Q P
Sbjct: 1144 TGPAGQKGEPGSDGIPGSAGEKGEQGVP 1171
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 107/324 (33%), Gaps = 71/324 (21%)
Query: 28 DLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
D+PGP P L G S P LPG P +PG PG + G P
Sbjct: 837 DMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPG------FPGSKGEMGVMGTPGQP 890
Query: 82 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
PGP+ P LPG LPG P P G LPG +PG D+
Sbjct: 891 GSPGPAGTPGLPGEKGDHGLPGSSGPRGDPGFKGDKGDVGLPG------MPGSMEHVDM- 943
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS 195
S G GP+ G P +PG + P PGP P L G
Sbjct: 944 --GSMKGQKGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLSGTP 1001
Query: 196 SAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---- 245
+P LPGP + P PG P +PG P PG A G S P +
Sbjct: 1002 GSPGLPGPKGSVGGMGLPGSPGEKGVPGIPGSQGVPGSPGEKGAKGEKGQSGLPGIGIPG 1061
Query: 246 ----------------------------------PGPSSAPDLPGPSSAPDLPGPSSAPD 271
PGP +P G +P LPG
Sbjct: 1062 RPGDKGDQGLAGFPGSPGEKGEKGSAGTPGMPGSPGPRGSPGNIGHPGSPGLPGEKGDKG 1121
Query: 272 LPGPSSAPDLPGPSSAPDLPGPSS 295
LPG P + G + P PGP+
Sbjct: 1122 LPGLDGVPGVKGEAGLPGTPGPTG 1145
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 111/320 (34%), Gaps = 66/320 (20%)
Query: 34 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAP 90
+P PGP PG P +PG A PG P LPGP LPG +P
Sbjct: 655 GSPGFPGPQGDRGFPGTPGRPGIPGEKGAVGQPG-IGFPGLPGPKGVDGLPGEIGRPGSP 713
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
PG + P PGP PG LPG P LPG P G P +PG
Sbjct: 714 GRPGFNGLPGNPGPQGQKGEPGIG----LPGLKGQPGLPGIPGTPGEKGSIGGPGVPGEQ 769
Query: 151 SAPDLPGPSSAPDLPGP--------------------------------SSAPDLPGPSS 178
PG PGP S P + G
Sbjct: 770 GLTGPPGLQGIRGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGQGPPGSSGPPGIKGEKG 829
Query: 179 APDLPGPSSAPDLPGPS------SAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--G 229
P PG D+PGP P L G S P LPG P +PG P S ++ G
Sbjct: 830 FPGFPG----LDMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMG 885
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
P PGP+ P LPG LPG S GP P G LPG
Sbjct: 886 TPGQPGSPGPAGTPGLPGEKGDHGLPGSS------GPRGDPGFKGDKGDVGLPG------ 933
Query: 290 LPGPSSTV-LGSYLGEAGHQ 308
+PG V +GS G+ G Q
Sbjct: 934 MPGSMEHVDMGSMKGQKGDQ 953
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 119/369 (32%), Gaps = 94/369 (25%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSA--------PDLPGPSSAPDLPGPSS---AP 72
P P PGP PG P +PG A P LPGP LPG +P
Sbjct: 654 PGSPGFPGPQGDRGFPGTPGRPGIPGEKGAVGQPGIGFPGLPGPKGVDGLPGEIGRPGSP 713
Query: 73 DLPGPSSAPDLPGPSSAPD-----LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 127
PG + P PGP LPG P LPG P G P +PG
Sbjct: 714 GRPGFNGLPGNPGPQGQKGEPGIGLPGLKGQPGLPGIPGTPGEKGSIGGPGVPGEQGLTG 773
Query: 128 LPGPSSAPDLPGP--------------------------------SSAPDLPGPSSAPDL 155
PG PGP S P + G P
Sbjct: 774 PPGLQGIRGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGQGPPGSSGPPGIKGEKGFPGF 833
Query: 156 PGPSSAPDLPGPSS------APDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSA 206
PG D+PGP P L G S P LPG P +PG P S ++ G
Sbjct: 834 PGL----DMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQ 889
Query: 207 PDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDL------ 254
P PGP+ P LPG LPG P P G P +PG D+
Sbjct: 890 PGSPGPAGTPGLPGEKGDHGLPGSSGPRGDPGFKGDKGDVGLPGMPGSMEHVDMGSMKGQ 949
Query: 255 ---------------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
PG P G + P PGP P L G +P LPGP
Sbjct: 950 KGDQGEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLSGTPGSPGLPGP 1009
Query: 294 SSTVLGSYL 302
+V G L
Sbjct: 1010 KGSVGGMGL 1018
>sp|O42854|YFHH_SCHPO SH3 domain-containing protein C23A1.17 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC23A1.17 PE=1 SV=1
Length = 1611
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 96/158 (60%), Gaps = 21/158 (13%)
Query: 42 SSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPG 85
S AP +P PS+ AP +P PS+AP +P P+S P +P SS P +P
Sbjct: 1019 SKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPA 1078
Query: 86 PSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSA-PDLPGPSSAPDLPGPS-SAPDLPGPSS 142
PS AP +P PS P +P PS +AP +P PS A P +P PS AP +P PS +AP +P PS
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
Query: 143 APDLPGPS-SAPDLPGPSSAPDLPGPS-SAPDLPGPSS 178
AP +P PS +AP +P PS AP +P PS +AP +P PSS
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 96/158 (60%), Gaps = 21/158 (13%)
Query: 69 SSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPG 112
S AP +P PS+ AP +P PS+AP +P P+S P +P SS P +P
Sbjct: 1019 SKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPA 1078
Query: 113 PSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSA-PDLPGPSSAPDLPGPS-SAPDLPGPSS 169
PS AP +P PS P +P PS +AP +P PS A P +P PS AP +P PS +AP +P PS
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
Query: 170 APDLPGPS-SAPDLPGPSSAPDLPGPS-SAPDLPGPSS 205
AP +P PS +AP +P PS AP +P PS +AP +P PSS
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 96/158 (60%), Gaps = 21/158 (13%)
Query: 105 SSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPG 148
S AP +P PS+ AP +P PS+AP +P P+S P +P SS P +P
Sbjct: 1019 SKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPA 1078
Query: 149 PSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSA-PDLPGPSSAPDLPGPS-SAPDLPGPSS 205
PS AP +P PS P +P PS +AP +P PS A P +P PS AP +P PS +AP +P PS
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
Query: 206 APDLPGPS-SAPDLPGPSSAPDLPGPS-SAPDLPGPSS 241
AP +P PS +AP +P PS AP +P PS +AP +P PSS
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 96/158 (60%), Gaps = 21/158 (13%)
Query: 141 SSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPG 184
S AP +P PS+ AP +P PS+AP +P P+S P +P SS P +P
Sbjct: 1019 SKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPA 1078
Query: 185 PSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSA-PDLPGPSSAPDLPGPS-SAPDLPGPSS 241
PS AP +P PS P +P PS +AP +P PS A P +P PS AP +P PS +AP +P PS
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
Query: 242 APDLPGPS-SAPDLPGPSSAPDLPGPS-SAPDLPGPSS 277
AP +P PS +AP +P PS AP +P PS +AP +P PSS
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 86/143 (60%), Gaps = 20/143 (13%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPGPSSAPDLPGPSSAPD 73
+P PS+AP +P P+S P +P SS P +P PS AP +P PS P
Sbjct: 1034 IPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP 1093
Query: 74 LPGPS-SAPDLPGPSSA-PDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPS-SAPDLP 129
+P PS +AP +P PS A P +P PS AP +P PS +AP +P PS AP +P PS +AP +P
Sbjct: 1094 VPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVP 1153
Query: 130 GPSSAPDLPGPS-SAPDLPGPSS 151
PS AP +P PS +AP +P PSS
Sbjct: 1154 APSGAPPVPKPSVAAPPVPAPSS 1176
Score = 38.9 bits (89), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 62/109 (56%), Gaps = 18/109 (16%)
Query: 204 SSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPG 247
S AP +P PS+ AP +P PS+AP +P P+S P +P SS P +P
Sbjct: 1019 SKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPA 1078
Query: 248 PSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSA-PDLPGPSSAPDLPGPS 294
PS AP +P PS P +P PS +AP +P PS A P +P PS AP +P PS
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPS 1127
>sp|P18583|SON_HUMAN Protein SON OS=Homo sapiens GN=SON PE=1 SV=4
Length = 2426
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 131/287 (45%), Gaps = 66/287 (22%)
Query: 66 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-- 123
P S+ D P S+ L P D+P + + P P+LP ++A +L S
Sbjct: 320 PSTSTTMDFPESSAIEALRLPEQPVDVPSEIADSSMTRPQELPELP-KTTALELQESSVA 378
Query: 124 SAPDLPGP--SSAPDLPGPSSAP--DLPGPSS--APDLPGPSS--APDLPGP--SSAPDL 173
SA +LPGP +S P+L GP P +LPGPS+ P+LPGP S P+LPGP ++ P+L
Sbjct: 379 SAMELPGPPATSMPELQGPPVTPVLELPGPSATPVPELPGPLSTPVPELPGPPATAVPEL 438
Query: 174 PGPSSAP------DLPG-----------------PSSAPDLPG------PSSAPDLPGPS 204
PGPS P +LPG P A +LPG P+ P +
Sbjct: 439 PGPSVTPVPQLSQELPGLPAPSMGLEPPQEVPEPPVMAQELPGLPLVTAAVELPEQPAVT 498
Query: 205 SAPDL-PGPSSAPDLPGPSSAPDLPGP-----SSAPDLPGP---SSAPDLPGP---SSAP 252
A +L P + +L P + P ++A L G + +LPG ++A
Sbjct: 499 VAMELTEQPVTTTELEQPVGMTTVEHPGHPEVTTATGLLGQPEATMVLELPGQPVATTAL 558
Query: 253 DLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGP 293
+LPG + P+LPG LP + A +L G + A +LPGP
Sbjct: 559 ELPGQPSVTGVPELPG------LPSATRALELSGQPVATGALELPGP 599
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 139/312 (44%), Gaps = 69/312 (22%)
Query: 28 DLPGPSS--APDLPGPSS--APDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
+LPGPS+ P+LPGP S P+LPGP ++ P+LPGPS P P + +LPG
Sbjct: 404 ELPGPSATPVPELPGPLSTPVPELPGPPATAVPELPGPSVT---PVPQLSQELPG----- 455
Query: 82 DLPGPS--------------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAP 126
LP PS A +LPG P + P+ P + A +L P +
Sbjct: 456 -LPAPSMGLEPPQEVPEPPVMAQELPG---LPLVTAAVELPEQPAVTVAMELTEQPVTTT 511
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLP 183
+L P + P P++ + P + +LPG ++A +LPG P
Sbjct: 512 ELEQPVGMTTVEHPGH-PEVTTATGLLGQPEATMVLELPGQPVATTALELPGQ------P 564
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGP---SSAPDLPGPSSAPDLP 237
+ P+LPG LP + A +L G + A +LPGP + A + G S
Sbjct: 565 SVTGVPELPG------LPSATRALELSGQPVATGALELPGPLMAAGALEFSGQS------ 612
Query: 238 GPSSAPDLPGP---SSAPDLPGPSSAPDLPGP---SSAPDLPGPS--SAPDLPGPSSAPD 289
G + A +L G + +LPG AP+LPG + A ++ S + +L + +
Sbjct: 613 GAAGALELLGQPLATGVLELPGQPGAPELPGQPVATVALEISVQSVVTTSELSTMTVSQS 672
Query: 290 LPGPSSTVLGSY 301
L PS+T L SY
Sbjct: 673 LEVPSTTALESY 684
>sp|Q641F3|COLA1_XENLA Collagen alpha-1(XXI) chain OS=Xenopus laevis GN=col21a1 PE=2 SV=1
Length = 957
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 101/311 (32%), Gaps = 38/311 (12%)
Query: 25 LEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 84
+P+ +A ++PG ++ L GPS P P P P D PGP P
Sbjct: 410 CDPEQNKRETACEIPG-TNGECLNGPSDVGGTPAPCICP----PGEKGD-PGPKGDSGQP 463
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
G +P PGP G S +P +PG +P + GP L G + G P
Sbjct: 464 GNPGSPGQPGPDGKHGFQGTSGSPGIPG---SPGVQGPRGFAGLKGNTGQDGEKGDRGMP 520
Query: 145 DLPGPSSAPDLPGPSS------------------------APDLPGPSSAPDLPGPSSAP 180
PG P + G A PG P G P
Sbjct: 521 GFPGLHGQPGIKGEMGPKGDKGDIGIDGKKGTKGDKGGNGATGKPGRHGEPGSYGKDGIP 580
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLP 237
PG PGP L G P +PG A L G S P GP+ P +
Sbjct: 581 GYPGQKGEEGKPGPPGMEGLRGLPGIPGIPGNDGANGLKGETGLSGEPGARGPTGTPGIS 640
Query: 238 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
GP GP G + P P+ G P G + P L GP
Sbjct: 641 GPEGISGPQGPVGPKGNKGETGPPGKASPAGMKGEKGEMGIPGQQGYTGIPGLMGPKGDK 700
Query: 298 LGSYLGEAGHQ 308
LGE G Q
Sbjct: 701 --GNLGERGMQ 709
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 99/336 (29%), Gaps = 43/336 (12%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P PGP G S +P +PG +P + GP L G + G P PG
Sbjct: 469 PGQPGPDGKHGFQGTSGSPGIPG---SPGVQGPRGFAGLKGNTGQDGEKGDRGMPGFPGL 525
Query: 87 SSAPDLPGPSS------------------------APDLPGPSSAPDLPGPSSAPDLPGP 122
P + G A PG P G P PG
Sbjct: 526 HGQPGIKGEMGPKGDKGDIGIDGKKGTKGDKGGNGATGKPGRHGEPGSYGKDGIPGYPGQ 585
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSA 179
PGP L G P +PG A L G S P GP+ P + GP
Sbjct: 586 KGEEGKPGPPGMEGLRGLPGIPGIPGNDGANGLKGETGLSGEPGARGPTGTPGISGPEGI 645
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
GP G + P P+ G P G + P L GP G
Sbjct: 646 SGPQGPVGPKGNKGETGPPGKASPAGMKGEKGEMGIPGQQGYTGIPGLMGPKGDKGNLGE 705
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP------DLPGP 293
G + +PG + G G + GP P PGP
Sbjct: 706 RGMQGHKGEHGSSGMPGLKGEHGVTGSKGEKGEIGEHGHRGITGPRGEPGNMGLIGAPGP 765
Query: 294 SSTVLGSYLGEAGHQK--SPKGLEPKPAQISFVLNI 327
GE G Q PKG + K +F+ I
Sbjct: 766 RGMS-----GERGTQGLPGPKGQQGKEQSEAFIRQI 796
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 107/335 (31%), Gaps = 51/335 (15%)
Query: 21 TERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPG 76
+R ++PG ++ L GPS P P P PGP PG +P PG
Sbjct: 415 NKRETACEIPG-TNGECLNGPSDVGGTPAPCICPPGEKGDPGPKGDSGQPGNPGSPGQPG 473
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
P G S +P +PG +P + GP L G + G P PG P
Sbjct: 474 PDGKHGFQGTSGSPGIPG---SPGVQGPRGFAGLKGNTGQDGEKGDRGMPGFPGLHGQPG 530
Query: 137 LPGPSS------------------------APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 172
+ G A PG P G P PG
Sbjct: 531 IKGEMGPKGDKGDIGIDGKKGTKGDKGGNGATGKPGRHGEPGSYGKDGIPGYPGQKGEEG 590
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS--SAPDL 227
PGP L G P +PG A L G S P GP+ P + GP S P
Sbjct: 591 KPGPPGMEGLRGLPGIPGIPGNDGANGLKGETGLSGEPGARGPTGTPGISGPEGISGPQG 650
Query: 228 P-GPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 280
P GP G P+ G P G + P L GP G
Sbjct: 651 PVGPKGNKGETGPPGKASPAGMKGEKGEMGIPGQQGYTGIPGLMGPKGDKGNLGERGMQG 710
Query: 281 LPGPSSAPDLPGPSST--VLGSY-----LGEAGHQ 308
G + +PG V GS +GE GH+
Sbjct: 711 HKGEHGSSGMPGLKGEHGVTGSKGEKGEIGEHGHR 745
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 91/293 (31%), Gaps = 24/293 (8%)
Query: 27 PDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +PG A L G S P GP+ P + GP GP G + P
Sbjct: 607 PGIPGNDGANGLKGETGLSGEPGARGPTGTPGISGPEGISGPQGPVGPKGNKGETGPPGK 666
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
P+ G P G + P L GP G G + +PG
Sbjct: 667 ASPAGMKGEKGEMGIPGQQGYTGIPGLMGPKGDKGNLGERGMQGHKGEHGSSGMPGLKGE 726
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDL 200
+ G G + GP P G AP + G LPGP
Sbjct: 727 HGVTGSKGEKGEIGEHGHRGITGPRGEPGNMGLIGAPGPRGMSGERGTQGLPGPKGQQGK 786
Query: 201 PGPSS----------APDLPG------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
+ LP + +P LPGP G P
Sbjct: 787 EQSEAFIRQICLDVLKAQLPSLIQNDIRQNCNQCKTQEGSPGLPGPPGPVGPEGTRGHPG 846
Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDL-PGPSSAPDLPGPSS 295
LPG + L G P +PG P PG + D+ PGP +P +PGP+
Sbjct: 847 LPGRNGFSGLVGQPGLPGIPGTKGLPGKPGAKGNKGDIEPGPQGSPGVPGPAG 899
>sp|Q17RW2|COOA1_HUMAN Collagen alpha-1(XXIV) chain OS=Homo sapiens GN=COL24A1 PE=2 SV=2
Length = 1714
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 92/298 (30%), Gaps = 34/298 (11%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
P + P + PG GP+ GP GP A G L G
Sbjct: 1102 PEGIVGIPGQRGRPGKKGDKGQIGPTGEVGSRGPPGKIGKSGPKGARGTRGAVGHLGLMG 1161
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-------------------- 116
P P +PG PGPS LPGP PG S
Sbjct: 1162 PDGEPGIPGYRGHQGQPGPSG---LPGPKGEKGYPGEDSTVLGPPGPRGEPGPVGDQGER 1218
Query: 117 --PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
P G +PG A GP P PG L G + G A P
Sbjct: 1219 GEPGAEGYKGHVGVPGLRGATGQQGP---PGEPGDQGEQGLKGERGSEGNKGKKGA---P 1272
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
GPS P +PG G G S P GP LPG P G + AP
Sbjct: 1273 GPSGKPGIPGLQGLLGPKGIQGYHGADGISGNPGKIGPPGKQGLPGIRGGPGRTGLAGAP 1332
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
PG + LPG +P + GP LPG G A GP P L G
Sbjct: 1333 GPPGVKGSSGLPG---SPGIQGPKGEQGLPGQPGIQGKRGHRGAQGDQGPCGDPGLKG 1387
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 84/279 (30%), Gaps = 21/279 (7%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E + G G L G + P G P L G LPG + LPG
Sbjct: 937 EQGIQGAKGEKGDQGKRGPHGLIGKTGNPGERGFQGKPGLQG------LPGSTGDRGLPG 990
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
L G P G P G S PG G PG P
Sbjct: 991 EPGLRGLQGDVGPPGEMGMEGPPGTEGESGLQGEPGAKGDVGTAGSVGGTGEPGLRGEPG 1050
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPD 199
PG L G +PG P G LPG S LPGP
Sbjct: 1051 APGEEG---LQGKDGLKGVPGGRGLPGEDGEKGEMGLPGIIGPLGRSGQTGLPGPEGIVG 1107
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
+PG P G GP+ GP GP A G L GP
Sbjct: 1108 IPGQRGRPGKKGDKGQI---GPTGEVGSRGPPGKIGKSGPKGARGTRGAVGHLGLMGPDG 1164
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVL 298
P +PG PGPS LPGP PG STVL
Sbjct: 1165 EPGIPGYRGHQGQPGPSG---LPGPKGEKGYPGEDSTVL 1200
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 82/256 (32%), Gaps = 25/256 (9%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-------------PDLPGPSSAP 72
EP +PG PGPS LPGP PG S G P
Sbjct: 1165 EPGIPGYRGHQGQPGPSG---LPGPKGEKGYPGEDSTVLGPPGPRGEPGPVGDQGERGEP 1221
Query: 73 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
G +PG A GP P PG L G + G A PGPS
Sbjct: 1222 GAEGYKGHVGVPGLRGATGQQGP---PGEPGDQGEQGLKGERGSEGNKGKKGA---PGPS 1275
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
P +PG G G S P GP LPG P G + AP P
Sbjct: 1276 GKPGIPGLQGLLGPKGIQGYHGADGISGNPGKIGPPGKQGLPGIRGGPGRTGLAGAPGPP 1335
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
G + LPG +P + GP LPG G A GP P L G
Sbjct: 1336 GVKGSSGLPG---SPGIQGPKGEQGLPGQPGIQGKRGHRGAQGDQGPCGDPGLKGQPGEY 1392
Query: 253 DLPGPSSAPDLPGPSS 268
+ G + PGP
Sbjct: 1393 GVQGLTGFQGFPGPKG 1408
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 81/259 (31%), Gaps = 37/259 (14%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS------------------ 70
L GP P +PG PGPS LPGP PG S
Sbjct: 1159 LMGPDGEPGIPGYRGHQGQPGPSG---LPGPKGEKGYPGEDSTVLGPPGPRGEPGPVGDQ 1215
Query: 71 -------APDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
A G P L G + P PG L G + G AP
Sbjct: 1216 GERGEPGAEGYKGHVGVPGLRGATGQQGPPGEPGDQGEQGLKGERGSEGNKGKKGAP--- 1272
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
GPS P +PG G G S P GP LPG P G + AP
Sbjct: 1273 GPSGKPGIPGLQGLLGPKGIQGYHGADGISGNPGKIGPPGKQGLPGIRGGPGRTGLAGAP 1332
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
PG + LPG +P + GP LPG G A GP P L G
Sbjct: 1333 GPPGVKGSSGLPG---SPGIQGPKGEQGLPGQPGIQGKRGHRGAQGDQGPCGDPGLKGQP 1389
Query: 241 SAPDLPGPSSAPDLPGPSS 259
+ G + PGP
Sbjct: 1390 GEYGVQGLTGFQGFPGPKG 1408
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 73/245 (29%), Gaps = 15/245 (6%)
Query: 21 TERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
T P E G LPG + LPG L G P G P G S
Sbjct: 962 TGNPGERGFQGKPGLQGLPGSTGDRGLPGEPGLRGLQGDVGPPGEMGMEGPPGTEGESGL 1021
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
PG G PG P PG L G +PG P G
Sbjct: 1022 QGEPGAKGDVGTAGSVGGTGEPGLRGEPGAPGEEG---LQGKDGLKGVPGGRGLPGEDGE 1078
Query: 141 SSAPDLPG------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
LPG S LPGP +PG P G GP+ GP
Sbjct: 1079 KGEMGLPGIIGPLGRSGQTGLPGPEGIVGIPGQRGRPGKKGDKGQI---GPTGEVGSRGP 1135
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
GP A G L GP P +PG PGPS LPGP
Sbjct: 1136 PGKIGKSGPKGARGTRGAVGHLGLMGPDGEPGIPGYRGHQGQPGPSG---LPGPKGEKGY 1192
Query: 255 PGPSS 259
PG S
Sbjct: 1193 PGEDS 1197
Score = 37.0 bits (84), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 85/259 (32%), Gaps = 23/259 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+PGP P LP LPGP PG S +PG L G P + G
Sbjct: 517 IPGPHGNPGLP------GLPGPKGPKGDPGFSPGQPVPGEKGDQGLSGLMGPPGMQGDKG 570
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
PG P LPG P G +P PG L GP PGP A G
Sbjct: 571 LKGHPG---LPGLPGEQGIPGFAGNIGSPGYPGRQG---LAGPEGN---PGPKGAQGFIG 621
Query: 149 -PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
P A L GP +PG G P G L G GP P
Sbjct: 622 SPGEAGQL-GPEGERGIPGIRGKKGFKGRQGFPGDFGDRGPAGLDGSPGLVGGTGPPGFP 680
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
L G S P GP +PGP L G P + G G P PG
Sbjct: 681 GLRG-SVGP--VGPIGPAGIPGPMG---LSGNKGLPGIKGDKGEQGTAGELGEPGYPGDK 734
Query: 268 SAPDLPGPSSAPDLPGPSS 286
A LPGP GPS
Sbjct: 735 GAVGLPGPPGMRGKSGPSG 753
>sp|Q14031|CO4A6_HUMAN Collagen alpha-6(IV) chain OS=Homo sapiens GN=COL4A6 PE=2 SV=3
Length = 1691
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 87/248 (35%), Gaps = 12/248 (4%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
+ V+ +P P G P L G S PG G +P LPG S P L
Sbjct: 1009 IIKGVSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLK 1068
Query: 76 GPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
G + PGP P G G PG G S LPG
Sbjct: 1069 GDNGQTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGA 1128
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1129 PGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTHGT 1188
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
PGPS +PGP+ LPGP PG AP PG G P L GP+
Sbjct: 1189 PGPSIT-GVPGPAG---LPGPKGEKGYPGIGIGAPGKPGLRGQ---KGDRGFPGLQGPAG 1241
Query: 251 APDLPGPS 258
P PG S
Sbjct: 1242 LPGAPGIS 1249
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 107/296 (36%), Gaps = 35/296 (11%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PS 69
Y PS P P PGP + LPG P G P PG P+LPG P
Sbjct: 661 GSYGPSGF---PGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPR 717
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSA----PDLPGPSS 124
LPG P LPG LPG +P LPG A D+ G + L G +
Sbjct: 718 GEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAENGAPGEQGLQGLTG 771
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
G S P L G P L GP +P PG P PG S + G S P
Sbjct: 772 HKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLP- 830
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
AP PG S P G PG LPG P PG L G
Sbjct: 831 -----GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPG------LVGLKG 879
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+P PG + P L GP G P +PG P +PG +PG + +
Sbjct: 880 SPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGLKGIPGSTGKM 932
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 105/294 (35%), Gaps = 41/294 (13%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAP 81
LPG LPG P G P P GPS P PGP + LPG P
Sbjct: 631 GLPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQP 690
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
G P PG P+LPG PGP LPG P LPG LPG
Sbjct: 691 GSSGSKGEPGSPGLVHLPELPG------FPGPRGEKGLPG---FPGLPGKDG---LPGMI 738
Query: 142 SAPDLPGPSSAP-DLPGPSSA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 195
+P LPG A D+ G + L G + G S P L G P L GP
Sbjct: 739 GSPGLPGSKGATGDIFGAENGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKG 798
Query: 196 --SAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDL---------PGPSS 241
+P PG P PG S + G S AP PG S P PG
Sbjct: 799 ERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGFPGISGHPGKKGTRGKKGPPGSIV 858
Query: 242 APDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
LPG P L G +P PG + P L GP G P +PG
Sbjct: 859 KKGLPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG 912
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 70/193 (36%), Gaps = 10/193 (5%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G S P PG LPG + + G P +PG S + + G +P LPG S
Sbjct: 1010 IKGVSGKPGPPGFMGIRGLPGLKGSSGITG---FPGMPGESGSQGIRG---SPGLPGASG 1063
Query: 170 APDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
P L G + PGP P G G PG G S
Sbjct: 1064 LPGLKGDNGQTVEISGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDV 1123
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
LPG P + G P LPG S GP +P L GP P PG LPG
Sbjct: 1124 GLPGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTK 1183
Query: 286 SAPDLPGPSSTVL 298
PGPS T +
Sbjct: 1184 GTHGTPGPSITGV 1196
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 98/277 (35%), Gaps = 32/277 (11%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPS 78
+ P P PGP LPG P LPG LPG +P LPG A D+ G
Sbjct: 704 LVHLPELPGFPGPRGEKGLPG---FPGLPGKDG---LPGMIGSPGLPGSKGATGDIFGAE 757
Query: 79 SA----PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGP 131
+ L G + G S P L G P L GP +P PG P PG
Sbjct: 758 NGAPGEQGLQGLTGHKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGS 817
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
S + G S P AP PG S P G PG LPG P
Sbjct: 818 SGPYGIKGKSGLP------GAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGN 871
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
PG L G +P PG + P L GP G P +PG P +PG
Sbjct: 872 PG------LVGLKGSPGSPGVAGLPALSGPKGEKGSVGFVGFPGIPG---LPGIPGTRGL 922
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
+PG + GPS PG PGP P
Sbjct: 923 KGIPGSTGK---MGPSGRAGTPGEKGDRGNPGPVGIP 956
Score = 35.4 bits (80), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 57/167 (34%), Gaps = 14/167 (8%)
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA--------PDLPGPSSAPDLPGPSSAPD 199
G + PGP P + GP P L P LPGP G P
Sbjct: 256 GKKGSKGEPGPKGFPGISGPPGFPGLGTTGEKGEKGEKGIPGLPGPRGPMGSEGVQGPPG 315
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGP 257
G PG + + G LPGP D+ G S P PG P L G
Sbjct: 316 QQGKKGTLGFPGLNGFQGIEGQKGDIGLPGPDVFIDIDGAVISGNPGDPGVPGLPGLKGD 375
Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG----PSSTVLGS 300
L GPS P LP S P GP P L G P T +G+
Sbjct: 376 EGIQGLRGPSGVPGLPALSGVPGALGPQGFPGLKGDQGNPGRTTIGA 422
>sp|Q30D77|COOA1_MOUSE Collagen alpha-1(XXIV) chain OS=Mus musculus GN=Col24a1 PE=2 SV=2
Length = 1733
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 101/300 (33%), Gaps = 35/300 (11%)
Query: 27 PDLPGPSSAPDLPGPSS----------APDLPGPSSAPDL--PGPSSAPDLPGPSSAPDL 74
P L G AP PGP A D G + + G P LPG + +P
Sbjct: 927 PGLVGARGAPGSPGPKGQRGPRGPDGLAGDQGGHGAKGEKGNQGKRGLPGLPGKAGSPGE 986
Query: 75 PGPSSAPDLPG-PSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
G P G P S+ D+ GP+ P LPG + P G P G S PG
Sbjct: 987 RGVQGKPGFQGLPGSSGDV-GPAGEPGPRGLPGIAGLPGEMGVEGPPGTEGDSGLQGEPG 1045
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
G + A PGP P PG L G PG S P G
Sbjct: 1046 AKGDGGPAGSAGATGEPGPRGEPGAPGEEG---LQGKDGLKGAPGGSGLPGEDGDKGEMG 1102
Query: 191 LPGPS------SAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSAPDLPG 238
LPG + LPGP PG GP+ GP + G
Sbjct: 1103 LPGTAGPVGRPGQMGLPGPEGIVGTPGQRGRLGKKGDKGQVGPTGEAGSRGPPGSVGENG 1162
Query: 239 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVL 298
P A G L GP P +PG PGPS LPGP PG STVL
Sbjct: 1163 PKGARGTRGAVGPLGLMGPEGEPGIPGYRGHQGQPGPSG---LPGPKGEKGYPGEDSTVL 1219
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 80/254 (31%), Gaps = 16/254 (6%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP + LPGP PG G GP+ GP + GP A
Sbjct: 1112 RPGQMGLPGPEGIVGTPGQRGRLGKKGDKGQV---GPTGEAGSRGPPGSVGENGPKGARG 1168
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-------P 135
G L GP P +PG PGPS LPGP PG S P
Sbjct: 1169 TRGAVGPLGLMGPEGEPGIPGYRGHQGQPGPSG---LPGPKGEKGYPGEDSTVLGPPGPP 1225
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
PGP G G P L G + PG GP GP
Sbjct: 1226 GEPGPMGEQGETGEHGEEGYKGHMGVPGLRGATGQQGPPGEPGDQGGQGPKGERGSEGPQ 1285
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
+PGPS P +PG P PGP PG PG P G P P
Sbjct: 1286 GKRGVPGPSGKPGIPG---VPGFPGPKGLQGYPGVDGMSGYPGKPGLPGKQGLLGVPGSP 1342
Query: 256 GPSSAPDLPGPSSA 269
G + PGP
Sbjct: 1343 GRTGVAGSPGPQGG 1356
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 78/256 (30%), Gaps = 31/256 (12%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA----------------- 71
L GP P +PG PGPS LPGP PG S
Sbjct: 1178 LMGPEGEPGIPGYRGHQGQPGPSG---LPGPKGEKGYPGEDSTVLGPPGPPGEPGPMGEQ 1234
Query: 72 --------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 123
G P L G + PG GP GP +PGPS
Sbjct: 1235 GETGEHGEEGYKGHMGVPGLRGATGQQGPPGEPGDQGGQGPKGERGSEGPQGKRGVPGPS 1294
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
P +PG P PGP PG PG P G P PG + P
Sbjct: 1295 GKPGIPG---VPGFPGPKGLQGYPGVDGMSGYPGKPGLPGKQGLLGVPGSPGRTGVAGSP 1351
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
GP GP +P PGP LPG P G P G AP L G
Sbjct: 1352 GPQGGKGASGPPGSPGAPGPKGEQGLPGQPGVPGQRGHRGTPGDQGLRGAPGLKGQPGEH 1411
Query: 244 DLPGPSSAPDLPGPSS 259
G + PGP
Sbjct: 1412 GDQGLAGFQGFPGPRG 1427
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 52/153 (33%), Gaps = 3/153 (1%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E GP +PGPS P +PG P PGP PG PG P G
Sbjct: 1278 ERGSEGPQGKRGVPGPSGKPGIPG---VPGFPGPKGLQGYPGVDGMSGYPGKPGLPGKQG 1334
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P PG + PGP GP +P PGP LPG P G P
Sbjct: 1335 LLGVPGSPGRTGVAGSPGPQGGKGASGPPGSPGAPGPKGEQGLPGQPGVPGQRGHRGTPG 1394
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
G AP L G G + PGP
Sbjct: 1395 DQGLRGAPGLKGQPGEHGDQGLAGFQGFPGPRG 1427
>sp|P17140|CO4A2_CAEEL Collagen alpha-2(IV) chain OS=Caenorhabditis elegans GN=let-2 PE=1
SV=2
Length = 1758
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 107/300 (35%), Gaps = 49/300 (16%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+PG +P PG LPG P L G P PG LPG S P PG
Sbjct: 821 VPGQPGSPGFPGLKGDAGLPGLPGTPGLEGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKG 880
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
LPG +PG +P PG P +PG LPG L G AP G
Sbjct: 881 DAGLPG------VPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGAP---G 931
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPG---------------PSSAPDLPGPSSAPDLP- 192
S AP LPG P + G + P +PG P P +PG P +
Sbjct: 932 QSGAPGLPGAPGYPGMKGNAGIPGVPGFKGDGGLPGLPGLNGPKGEPGVPGMPGTPGMKG 991
Query: 193 -----------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--- 238
G S P + G LPG GP++ G + P PG
Sbjct: 992 NGGLPGLPGRDGLSGVPGMKGDRGFNGLPGEKGEA---GPAARDGQKGDAGLPGQPGLRG 1048
Query: 239 ---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPG 292
PS P +PG LPG P PG P +PG + AP PG P PG
Sbjct: 1049 PQGPSGLPGVPGFKGETGLPG-YGQPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPG 1107
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 113/311 (36%), Gaps = 53/311 (17%)
Query: 27 PDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +PGP P LPG + PG P PG P L G + P LPG P L
Sbjct: 793 PGIPGPKGDVGNPGLPGLNGQKGEPG-VGVPGQPGSPGFPGLKGDAGLPGLPG---TPGL 848
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGP 140
G P PG LPG S P PG + P +PG +P PG P +PG
Sbjct: 849 EGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKGDAGLPGVPGREGSPGFPGQDGLPGVPGM 908
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------- 193
LPG L G AP G S AP LPG P + G + P +PG
Sbjct: 909 KGEDGLPGLPGVTGLKGDLGAP---GQSGAPGLPGAPGYPGMKGNAGIPGVPGFKGDGGL 965
Query: 194 --------PSSAPDLPGPSSAPDLP------------GPSSAPDLPGPSSAPDLPG---- 229
P P +PG P + G S P + G LPG
Sbjct: 966 PGLPGLNGPKGEPGVPGMPGTPGMKGNGGLPGLPGRDGLSGVPGMKGDRGFNGLPGEKGE 1025
Query: 230 --PSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
P++ G + P PG PS P +PG LPG P PG P +
Sbjct: 1026 AGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLPG-YGQPGQPGEKGLPGI 1084
Query: 282 PGPSSAPDLPG 292
PG + PG
Sbjct: 1085 PGKAGRQGAPG 1095
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 94/259 (36%), Gaps = 34/259 (13%)
Query: 22 ERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------- 74
E + P PG P LPG PG PG P + G S P
Sbjct: 719 ENQVNPAPPGQPGLPGLPGTKGEGGYPGRPGEVGQPGFPGLPGMKGDSGLPGPPGLPGHP 778
Query: 75 -----PGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
G P LPG +PGP P LPG + PG P PG P
Sbjct: 779 GVPGDKGFGGVPGLPG------IPGPKGDVGNPGLPGLNGQKGEPG-VGVPGQPGSPGFP 831
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
L G + P LPG P L G P PG LPG S P PG LPG
Sbjct: 832 GLKGDAGLPGLPG---TPGLEGQRGFPGAPGLKGGDGLPGLSGQPGYPGEKGDAGLPG-- 886
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
+PG +P PG P +PG LPG L G A PG S AP LP
Sbjct: 887 ----VPGREGSPGFPGQDGLPGVPGMKGEDGLPGLPGVTGLKGDLGA---PGQSGAPGLP 939
Query: 247 GPSSAPDLPGPSSAPDLPG 265
G P + G + P +PG
Sbjct: 940 GAPGYPGMKGNAGIPGVPG 958
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 101/295 (34%), Gaps = 22/295 (7%)
Query: 26 EPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
+P PG P +PG + AP PG P PG PG P G P
Sbjct: 1072 QPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPG 1131
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDL-- 137
G PG S AP L G P + G P +PG PG
Sbjct: 1132 QKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDKGQGGLPGIPGDRGMDGYPGQKGENGYPG 1191
Query: 138 ----------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
G + P PG +P PG P +PG PG LPG S
Sbjct: 1192 QPGLPGLGGEKGFAGTPGFPGLKGSPGYPGQDGLPGIPGLKGDSGFPGQPGQEGLPGLSG 1251
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
+ G P PG S GP AP L G P LPG L G AP L G
Sbjct: 1252 EKGMGGLPGMPGQPG-QSIAGPVGPPGAPGLQGKDGFPGLPGQKGESGLSGLPGAPGLKG 1310
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL 302
S P PG DL G + P G P +PG P +PG V G+ L
Sbjct: 1311 ESGMPGFPGAKG--DL-GANGIPGKRGEDGLPGVPGRDGQPGIPGLKGEVGGAGL 1362
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 99/301 (32%), Gaps = 38/301 (12%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPG-PSSAPDL-----PGP 77
P G AP PG P PG PG P LPG P DL PG
Sbjct: 1085 PGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPGQKGDLGQSGQPGL 1144
Query: 78 SSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDL------------PGP 122
S AP L G P + G P +PG PG G
Sbjct: 1145 SGAPGLDGQPGVPGIRGDKGQGGLPGIPGDRGMDGYPGQKGENGYPGQPGLPGLGGEKGF 1204
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
+ P PG +P PG P +PG PG LPG S + G P
Sbjct: 1205 AGTPGFPGLKGSPGYPGQDGLPGIPGLKGDSGFPGQPGQEGLPGLSGEKGMGGLPGMPGQ 1264
Query: 183 PGPS--------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--- 231
PG S AP L G P LPG L G AP L G S P PG
Sbjct: 1265 PGQSIAGPVGPPGAPGLQGKDGFPGLPGQKGESGLSGLPGAPGLKGESGMPGFPGAKGDL 1324
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
A +PG LPG P G P L G LPG P +PG LP
Sbjct: 1325 GANGIPGKRGEDGLPG---VPGRDGQPGIPGLKGEVGGAGLPGQPGFPGIPGLKGEGGLP 1381
Query: 292 G 292
G
Sbjct: 1382 G 1382
Score = 40.4 bits (93), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 74/214 (34%), Gaps = 23/214 (10%)
Query: 69 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 128
+ P PG +P PG P +PG PG LPG S + G P
Sbjct: 1205 AGTPGFPGLKGSPGYPGQDGLPGIPGLKGDSGFPGQPGQEGLPGLSGEKGMGGLPGMPGQ 1264
Query: 129 PGPS--------SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
PG S AP L G P LPG L G AP L G S P PG
Sbjct: 1265 PGQSIAGPVGPPGAPGLQGKDGFPGLPGQKGESGLSGLPGAPGLKGESGMPGFPGAKG-- 1322
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
DL G + P G P +PG P +PG L G LPG P +PG
Sbjct: 1323 DL-GANGIPGKRGEDGLPGVPGRDGQPGIPG------LKGEVGGAGLPGQPGFPGIPG-- 1373
Query: 241 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
L G P PG PG P G
Sbjct: 1374 ----LKGEGGLPGFPGAKGEAGFPGTPGVPGYAG 1403
Score = 39.3 bits (90), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 74/211 (35%), Gaps = 13/211 (6%)
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPS 141
GPS P +PG LPG P PG P +PG + AP PG P PG
Sbjct: 1051 GPSGLPGVPGFKGETGLPG-YGQPGQPGEKGLPGIPGKAGRQGAPGSPGQDGLPGFPGMK 1109
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
PG P G P G PG S AP L G P + G LP
Sbjct: 1110 GESGYPGQDGLPGRDGLPGVPGQKGDLGQSGQPGLSGAPGLDGQPGVPGIRGDKGQGGLP 1169
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
G P G P G + P PG G + P PG +P PG P
Sbjct: 1170 G---IPGDRGMDGYPGQKGENGYPGQPGLPGLGGEKGFAGTPGFPGLKGSPGYPGQDGLP 1226
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG L G S P PG P L G
Sbjct: 1227 GIPG------LKGDSGFPGQPGQEGLPGLSG 1251
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 48/138 (34%), Gaps = 15/138 (10%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 97
L G P LPG L G AP L G S P PG DL G + P G
Sbjct: 1281 LQGKDGFPGLPGQKGESGLSGLPGAPGLKGESGMPGFPGAKG--DL-GANGIPGKRGEDG 1337
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
P +PG P +PG L G LPG P +PG L G P PG
Sbjct: 1338 LPGVPGRDGQPGIPG------LKGEVGGAGLPGQPGFPGIPG------LKGEGGLPGFPG 1385
Query: 158 PSSAPDLPGPSSAPDLPG 175
PG P G
Sbjct: 1386 AKGEAGFPGTPGVPGYAG 1403
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 73/220 (33%), Gaps = 35/220 (15%)
Query: 33 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 92
+ P PG +P PG LPG P L G S P PG P L G L
Sbjct: 1205 AGTPGFPGLKGSPGYPG---QDGLPG---IPGLKGDSGFPGQPGQEGLPGLSGEKGMGGL 1258
Query: 93 PGPSSAPD--------------LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
PG P L G P LPG L G AP L G S P P
Sbjct: 1259 PGMPGQPGQSIAGPVGPPGAPGLQGKDGFPGLPGQKGESGLSGLPGAPGLKGESGMPGFP 1318
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G DL G + P G P +PG P +PG L G LPG P
Sbjct: 1319 GAKG--DL-GANGIPGKRGEDGLPGVPGRDGQPGIPG------LKGEVGGAGLPGQPGFP 1369
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
+PG L G P PG PG P G
Sbjct: 1370 GIPG------LKGEGGLPGFPGAKGEAGFPGTPGVPGYAG 1403
>sp|P23206|COAA1_BOVIN Collagen alpha-1(X) chain OS=Bos taurus GN=COL10A1 PE=2 SV=1
Length = 674
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 88/221 (39%), Gaps = 34/221 (15%)
Query: 60 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 119
P+ G AP +PG P +PG P PG + P PG P LPG L
Sbjct: 257 EQGPEGIGKPGAPGIPG---QPGIPGMKGQPGAPGTAGLPGAPG-FGKPGLPG------L 306
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
G LPG A GP+ P LPGPS GP P PG LPGP
Sbjct: 307 KGQRGPVGLPGSPGAKGEQGPAGHPGEAGLPGPSGNMGPQGPKGIPGNPG------LPGP 360
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 233
GP+ P G + L PG P L GP P LPGP P + G +
Sbjct: 361 KGEMGPVGPAGNPGAKGERGSSGLDGKPGYPGEPGLNGPKGNPGLPGPKGDPGIAG---S 417
Query: 234 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
P LPGP GP+ A +PG + GP P +PG
Sbjct: 418 PGLPGPV------GPAGAKGVPGHNGE---AGPRGVPGIPG 449
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 84/210 (40%), Gaps = 31/210 (14%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P PG P +PG P PG + P PG P LPG L G LPG
Sbjct: 265 KPGAPGIPGQPGIPGMKGQPGAPGTAGLPGAPG-FGKPGLPG------LKGQRGPVGLPG 317
Query: 86 PSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
A GP+ P LPGPS GP P PG LPGP GP+
Sbjct: 318 SPGAKGEQGPAGHPGEAGLPGPSGNMGPQGPKGIPGNPG------LPGPKGEMGPVGPAG 371
Query: 143 APDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
P G + L PG P L GP P LPGP P + G +P LPGP
Sbjct: 372 NPGAKGERGSSGLDGKPGYPGEPGLNGPKGNPGLPGPKGDPGIAG---SPGLPGPV---- 424
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
GP+ A +PG + GP P +PG
Sbjct: 425 --GPAGAKGVPGHNGE---AGPRGVPGIPG 449
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 82/203 (40%), Gaps = 31/203 (15%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +P +PG P PG + P PG P LPG L G LPG A
Sbjct: 272 PGQPGIPGMKGQPGAPGTAGLPGAPG-FGKPGLPG------LKGQRGPVGLPGSPGAKGE 324
Query: 84 PGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
GP+ P LPGPS GP P PG LPGP GP+ P G
Sbjct: 325 QGPAGHPGEAGLPGPSGNMGPQGPKGIPGNPG------LPGPKGEMGPVGPAGNPGAKGE 378
Query: 141 SSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
+ L PG P L GP P LPGP P + G +P LPGP GP+ A
Sbjct: 379 RGSSGLDGKPGYPGEPGLNGPKGNPGLPGPKGDPGIAG---SPGLPGPV------GPAGA 429
Query: 198 PDLPGPSSAPDLPGPSSAPDLPG 220
+PG + GP P +PG
Sbjct: 430 KGVPGHNGE---AGPRGVPGIPG 449
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 105/303 (34%), Gaps = 50/303 (16%)
Query: 34 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-----APDLPGPSSAPDLP---- 84
S P PGP PGP P G S P L G P PG P
Sbjct: 153 SVPGKPGPQGPTGEPGPRGFPGEKGTSGVPGLNGQKGEMGHCTPCRPGERGLPGPQGPTG 212
Query: 85 ----------GPSSAPDLPGPSSAPDLPGPSSA--------------PDLPGPSSAPDLP 120
G + P PG +PG A P+ G AP +P
Sbjct: 213 PPGPPGVGKRGENGLPGQPGLKGDQGVPGERGAAGPSGPQGPPGEQGPEGIGKPGAPGIP 272
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS--APDLPGPSSAPDLPGPSSAPDLPGPSS 178
G P +PG P PG + P PG P L G LPG A GP+
Sbjct: 273 G---QPGIPGMKGQPGAPGTAGLPGAPGFGKPGLPGLKGQRGPVGLPGSPGAKGEQGPAG 329
Query: 179 AP---DLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PG 229
P LPGPS GP P LPGP GP+ P G + L PG
Sbjct: 330 HPGEAGLPGPSGNMGPQGPKGIPGNPGLPGPKGEMGPVGPAGNPGAKGERGSSGLDGKPG 389
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
P L GP P LPGP P + G P GP+ A +PG + GP P
Sbjct: 390 YPGEPGLNGPKGNPGLPGPKGDPGIAGSPGLPGPVGPAGAKGVPGHNGE---AGPRGVPG 446
Query: 290 LPG 292
+PG
Sbjct: 447 IPG 449
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 68/168 (40%), Gaps = 24/168 (14%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSS 79
+P P L G LPG A GP+ P LPGPS GP P PG
Sbjct: 300 KPGLPGLKGQRGPVGLPGSPGAKGEQGPAGHPGEAGLPGPSGNMGPQGPKGIPGNPG--- 356
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPD 136
LPGP GP+ P G + L PG P L GP P LPGP P
Sbjct: 357 ---LPGPKGEMGPVGPAGNPGAKGERGSSGLDGKPGYPGEPGLNGPKGNPGLPGPKGDPG 413
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
+ G +P LPGP GP+ A +PG + GP P +PG
Sbjct: 414 IAG---SPGLPGPV------GPAGAKGVPGHNGE---AGPRGVPGIPG 449
>sp|P08572|CO4A2_HUMAN Collagen alpha-2(IV) chain OS=Homo sapiens GN=COL4A2 PE=1 SV=4
Length = 1712
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 66/182 (36%), Gaps = 6/182 (3%)
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
PGP +PG LPG P G P +PG P LPGPS P L GP
Sbjct: 781 PGPRGDAGVPGQPGLKGLPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP--- 837
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
P L G AP GP P +PG P G PGP L G G
Sbjct: 838 PGLHGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGE 897
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
P PG +PG P L G +P + G P L G P G + +
Sbjct: 898 QGHPGSPGFKGIDGMPG---TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGI 954
Query: 273 PG 274
PG
Sbjct: 955 PG 956
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 89/273 (32%), Gaps = 24/273 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPG P G P +PG P LPGPS P L GP P L G AP GP
Sbjct: 798 LPGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLG 854
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P +PG P G PGP L G G P PG +PG
Sbjct: 855 LPGIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGEQGHPGSPGFKGIDGMPG 914
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------ 202
P L G +P + G P L G P G + +PG PG
Sbjct: 915 ---TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGIPGLKGLAGEPGFKGSRG 971
Query: 203 -----------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSS 250
D+ G G G P +PG S P LPG P
Sbjct: 972 DPGPPGPPPVILPGMKDIKGEKGDEGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGH 1031
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
+ G P +PG P + GP PG
Sbjct: 1032 IKGVKGDIGVPGIPGLPGFPGVAGPPGITGFPG 1064
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 75/223 (33%), Gaps = 22/223 (9%)
Query: 31 GPSSAPDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
G A LPGP LPG PGP +PG LP
Sbjct: 741 GSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLGAQ-PGPRGDAGVPGQPGLKGLP 799
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G P G P +PG P LPGPS P L GP P L G AP GP P
Sbjct: 800 GDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLP 856
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
+PG P G PGP L G G P PG +PG
Sbjct: 857 GIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGEQGHPGSPGFKGIDGMPG-- 914
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
P L G +P + G P L G P G + +PG
Sbjct: 915 -TPGLKGDRGSPGMDGFQGMPGLKGRPGFPGSKGEAGFFGIPG 956
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 81/249 (32%), Gaps = 24/249 (9%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+P LPGPS P L GP P L G AP GP P +PG P G PG
Sbjct: 822 QPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDTGAPG 878
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P L G G P PG +PG P L G +P + G P
Sbjct: 879 PVGMKGLSGDRGDAGFTGEQGHPGSPGFKGIDGMPG---TPGLKGDRGSPGMDGFQGMPG 935
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----------------PSSAPDLPGPSSA 188
L G P G + +PG PG D+ G
Sbjct: 936 LKGRPGFPGSKGEAGFFGIPGLKGLAGEPGFKGSRGDPGPPGPPPVILPGMKDIKGEKGD 995
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPG 247
G G P +PG S P LPG P + G P +PG P + G
Sbjct: 996 EGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGHIKGVKGDIGVPGIPGLPGFPGVAG 1055
Query: 248 PSSAPDLPG 256
P PG
Sbjct: 1056 PPGITGFPG 1064
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 59/178 (33%), Gaps = 19/178 (10%)
Query: 130 GPSSAPDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
G A LPGP LPG PGP +PG LP
Sbjct: 741 GSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLGAQ-PGPRGDAGVPGQPGLKGLP 799
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G P G P +PG P LPGPS P L GP P L G AP GP P
Sbjct: 800 GDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGP---PGLHGFPGAPGQEGPLGLP 856
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG P G PGP L G G P PG +PG
Sbjct: 857 GIPGREGLPGDRGDPGDTGAPGPVGMKGLSGDRGDAGFTGEQGHPGSPGFKGIDGMPG 914
Score = 35.4 bits (80), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 86/257 (33%), Gaps = 21/257 (8%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P P L G +PG G PG + + GP P L G + P L
Sbjct: 1100 PGRPGLKGERGTTGIPGLKGFFGEKGTEGDIGFPGITGVTGVQGP---PGLKGQTGFPGL 1156
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
GP P G LPG PG P PG L G LPG
Sbjct: 1157 TGP---PGSQGELGRIGLPGGKGDDGWPGAPGLPGFPGLRGIRGLHG------LPGTKGF 1207
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG- 202
P PG D P + P A LPGP P G AP GP +P L G
Sbjct: 1208 PGSPGSDIHGDPGFPGPPGERGDPGEANTLPGPVGVPGQKGDQGAPGERGPPGSPGLQGF 1267
Query: 203 -----PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
PS+ PG AP + G PGP + LPG PG AP PG
Sbjct: 1268 PGITPPSNISGAPGDKGAPGIFGLKGYRGPPGPPGSAALPGSKGDTGNPG---APGTPGT 1324
Query: 258 SSAPDLPGPSSAPDLPG 274
GP P + G
Sbjct: 1325 KGWAGDSGPQGRPGVFG 1341
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 79/231 (34%), Gaps = 32/231 (13%)
Query: 16 LPSTVTERPLEPDL--PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 73
L E+ E D+ PG + + GP P L G + P L GP + G P
Sbjct: 1117 LKGFFGEKGTEGDIGFPGITGVTGVQGP---PGLKGQTGFPGLTGPPGSQGELGRIGLPG 1173
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------------------PSS 115
G P PG P L G LPG P PG P
Sbjct: 1174 GKGDDGWPGAPGLPGFPGLRGIRGLHGLPGTKGFPGSPGSDIHGDPGFPGPPGERGDPGE 1233
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSS 169
A LPGP P G AP GP +P L G PS+ PG AP + G
Sbjct: 1234 ANTLPGPVGVPGQKGDQGAPGERGPPGSPGLQGFPGITPPSNISGAPGDKGAPGIFGLKG 1293
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
PGP + LPG PG AP PG GP P + G
Sbjct: 1294 YRGPPGPPGSAALPGSKGDTGNPG---APGTPGTKGWAGDSGPQGRPGVFG 1341
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 70/210 (33%), Gaps = 8/210 (3%)
Query: 85 GPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSS 142
G P +PG S P LPG P + G P +PG P + GP PG S
Sbjct: 1009 GIQGMPGIPGLSGIPGLPGRPGHIKGVKGDIGVPGIPGLPGFPGVAGPPGITGFPGFIGS 1068
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
D P A + D +LPG P L G +PG G
Sbjct: 1069 RGDKGAPGRAGLYGEIGATGDFGDIGDTINLPG---RPGLKGERGTTGIPGLKGFFGEKG 1125
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
PG + + GP P L G + P L GP + G P G P
Sbjct: 1126 TEGDIGFPGITGVTGVQGP---PGLKGQTGFPGLTGPPGSQGELGRIGLPGGKGDDGWPG 1182
Query: 263 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
PG P L G LPG P PG
Sbjct: 1183 APGLPGFPGLRGIRGLHGLPGTKGFPGSPG 1212
>sp|Q05306|COAA1_MOUSE Collagen alpha-1(X) chain OS=Mus musculus GN=Col10a1 PE=2 SV=1
Length = 680
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 78/206 (37%), Gaps = 28/206 (13%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +P +PG P AP + GP AP G P L G LPG A
Sbjct: 272 PGQPGIPGEKGHP------GAPGIAGPPGAPGF-GKQGLPGLRGQRGPAGLPGAPGAKGE 324
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
GP+ P PG +P GP +PG +PG L GP+ P G
Sbjct: 325 RGPAGHPGEPGLPGSPGNMGPQGPKGIPGNHG---IPGAKGEIGLVGPAGPPGARGARGP 381
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
P L G + P PG L GP P LPG P + G P L GP GP
Sbjct: 382 PGLDGKTGYPGEPG------LNGPKGNPGLPGQKGDPGVGG---TPGLRGPV------GP 426
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPG 229
A +PG + GP P +PG
Sbjct: 427 VGAKGVPGHNGE---AGPRGEPGIPG 449
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 76/203 (37%), Gaps = 28/203 (13%)
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
P +PG P AP + GP AP G P L G LPG A GP
Sbjct: 275 PGIPGEKGHP------GAPGIAGPPGAPGF-GKQGLPGLRGQRGPAGLPGAPGAKGERGP 327
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
+ P PG +P GP +PG +PG L GP+ P G P L
Sbjct: 328 AGHPGEPGLPGSPGNMGPQGPKGIPGNHG---IPGAKGEIGLVGPAGPPGARGARGPPGL 384
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
G + P PG L GP P LPG P + G P L GP GP A
Sbjct: 385 DGKTGYPGEPG------LNGPKGNPGLPGQKGDPGVGG---TPGLRGPV------GPVGA 429
Query: 252 PDLPGPSSAPDLPGPSSAPDLPG 274
+PG + GP P +PG
Sbjct: 430 KGVPGHNGE---AGPRGEPGIPG 449
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 72/194 (37%), Gaps = 19/194 (9%)
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 158
P +PG P AP + GP AP G P L G LPG A GP
Sbjct: 275 PGIPGEKGHP------GAPGIAGPPGAPGF-GKQGLPGLRGQRGPAGLPGAPGAKGERGP 327
Query: 159 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
+ P PG +P GP +PG +PG L GP+ P G P L
Sbjct: 328 AGHPGEPGLPGSPGNMGPQGPKGIPGNHG---IPGAKGEIGLVGPAGPPGARGARGPPGL 384
Query: 219 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 278
G + P PG L GP P LPG P + G GP A +PG +
Sbjct: 385 DGKTGYPGEPG------LNGPKGNPGLPGQKGDPGVGGTPGLRGPVGPVGAKGVPGHNGE 438
Query: 279 PDLPGPSSAPDLPG 292
GP P +PG
Sbjct: 439 ---AGPRGEPGIPG 449
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 56/144 (38%), Gaps = 24/144 (16%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
P EP LPG +P GP +PG +PG L GP+ P G P
Sbjct: 330 HPGEPGLPG---SPGNMGPQGPKGIPGNHG---IPGAKGEIGLVGPAGPPGARGARGPPG 383
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
L G + P PG L GP P LPG P + G P L GP GP
Sbjct: 384 LDGKTGYPGEPG------LNGPKGNPGLPGQKGDPGVGG---TPGLRGPV------GPVG 428
Query: 143 APDLPGPSSAPDLPGPSSAPDLPG 166
A +PG + GP P +PG
Sbjct: 429 AKGVPGHNGE---AGPRGEPGIPG 449
>sp|P02466|CO1A2_RAT Collagen alpha-2(I) chain OS=Rattus norvegicus GN=Col1a2 PE=1 SV=3
Length = 1372
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 104/278 (37%), Gaps = 21/278 (7%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E LPG S PG A L G A LPG + AP LPGP +PGP A G
Sbjct: 290 EAGLPGLSGPVGPPGNPGANGLTGAKGATGLPGVAGAPGLPGPRG---IPGPVGAAGATG 346
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P PGP+ + G + PG + A PGPS G P GP+ P
Sbjct: 347 PRGLVGEPGPAGSK---GETGNKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPAGPPG 403
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
L G + LPG + GP GP+ + GP+ PG P L GP
Sbjct: 404 LRGSPGSRGLPGADGRAGVMGPPGNRGSTGPAG---VRGPNGDAGRPG---EPGLMGPRG 457
Query: 206 APDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P PG GP P + PGP G + PGP GPS P
Sbjct: 458 LPGSPGNVGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPK------GPSGDPG 511
Query: 263 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGS 300
PG P L G AP G + A PGP G
Sbjct: 512 KPGEKGHPGLAGARGAPGPDGNNGAQGPPGPQGVQGGK 549
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 103/278 (37%), Gaps = 27/278 (9%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
L G A LPG + AP LPGP +PGP A GP PGP+ + G +
Sbjct: 311 LTGAKGATGLPGVAGAPGLPGPRG---IPGPVGAAGATGPRGLVGEPGPAGSK---GETG 364
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
PG + A PGPS G P GP+ P L G + LPG + G
Sbjct: 365 NKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLPGADGRAGVMG 424
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
P GP+ + GP+ PG P L GP P PG GP P
Sbjct: 425 PPGNRGSTGPAG---VRGPNGDAGRPG---EPGLMGPRGLPGSPGNVGPAGKEGPVGLPG 478
Query: 209 L---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
+ PGP G + PGP GPS P PG P L G AP G
Sbjct: 479 IDGRPGPIGPAGPRGEAGNIGFPGPK------GPSGDPGKPGEKGHPGLAGARGAPGPDG 532
Query: 266 PSSAPDLPGPSSAPDLP------GPSSAPDLPGPSSTV 297
+ A PGP GP LPGPS T
Sbjct: 533 NNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGTA 570
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 100/284 (35%), Gaps = 38/284 (13%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E + GP A PG P G L G P G P PG +
Sbjct: 158 RPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAQGVKGEPGAPGENG--- 214
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---------------------- 120
PG + A LPG PGP+ A G S P P
Sbjct: 215 TPGQAGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGEL 273
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
GP P GP+ GP LPG S PG A L G A LPG + AP
Sbjct: 274 GPVGNPGPAGPA------GPRGEAGLPGLSGPVGPPGNPGANGLTGAKGATGLPGVAGAP 327
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
LPGP +PGP A GP PGP+ + G + PG + A PGPS
Sbjct: 328 GLPGPRG---IPGPVGAAGATGPRGLVGEPGPAGS---KGETGNKGEPGSAGAQGPPGPS 381
Query: 241 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
G P GP+ P L G + LPG + GP
Sbjct: 382 GEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLPGADGRAGVMGP 425
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 96/256 (37%), Gaps = 21/256 (8%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
GP LPG S PG A L G A LPG + AP LPGP +PGP A
Sbjct: 286 GPRGEAGLPGLSGPVGPPGNPGANGLTGAKGATGLPGVAGAPGLPGPRG---IPGPVGAA 342
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 159
GP PGP+ + G + PG + A PGPS G P GP+
Sbjct: 343 GATGPRGLVGEPGPAGSK---GETGNKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPA 399
Query: 160 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
P L G + LPG + GP GP+ + GP+ PG P L
Sbjct: 400 GPPGLRGSPGSRGLPGADGRAGVMGPPGNRGSTGPAG---VRGPNGDAGRPG---EPGLM 453
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 276
GP P PG GP P + PGP G + PGP GPS
Sbjct: 454 GPRGLPGSPGNVGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPK------GPS 507
Query: 277 SAPDLPGPSSAPDLPG 292
P PG P L G
Sbjct: 508 GDPGKPGEKGHPGLAG 523
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 101/301 (33%), Gaps = 44/301 (14%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EP PG + GP+ P G P PG + GP A PG P G
Sbjct: 125 EPGEPGQTGPAGSRGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKG 184
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
L G P G P PG + PG + A LPG PGP+ A
Sbjct: 185 IRGHNGLDGLKGQPGAQGVKGEPGAPGENG---TPGQAGARGLPGERGRVGAPGPAGARG 241
Query: 146 LPGPSSAPDLP----------------------------------GPSSAPDLPGPSSAP 171
G S P P GP LPG S
Sbjct: 242 SDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEAGLPGLSGPV 300
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
PG A L G A LPG + AP LPGP +PGP A GP PGP+
Sbjct: 301 GPPGNPGANGLTGAKGATGLPGVAGAPGLPGPRG---IPGPVGAAGATGPRGLVGEPGPA 357
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
+ G + PG + A PGPS G P GP+ P L G + LP
Sbjct: 358 GS---KGETGNKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLP 414
Query: 292 G 292
G
Sbjct: 415 G 415
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 107/309 (34%), Gaps = 52/309 (16%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
GP A PGP GP+ P PG + GP+ P G P PG
Sbjct: 106 GPPGAVGAPGPQG---FQGPAGEPGEPGQTGPAGSRGPAGPPGKAGEDGHPGKPGRPGER 162
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
+ GP A PG P G L G P G P PG + PG +
Sbjct: 163 GVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAQGVKGEPGAPGENG---TPGQA 219
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----------------------GPSSA 188
A LPG PGP+ A G S P P GP
Sbjct: 220 GARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGN 278
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
P GP+ GP LPG S PG A L G A LPG + AP LPGP
Sbjct: 279 PGPAGPA------GPRGEAGLPGLSGPVGPPGNPGANGLTGAKGATGLPGVAGAPGLPGP 332
Query: 249 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDLPGPSSTVLGSYL 302
+PGP A GP PGP+ + PG + A PGPS
Sbjct: 333 RG---IPGPVGAAGATGPRGLVGEPGPAGSKGETGNKGEPGSAGAQGPPGPS-------- 381
Query: 303 GEAGHQKSP 311
GE G + SP
Sbjct: 382 GEEGKRGSP 390
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 99/273 (36%), Gaps = 41/273 (15%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----------------- 66
P E PG + A LPG PGP+ A G S P P
Sbjct: 210 PGENGTPGQAGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPG 268
Query: 67 -----GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 121
GP P GP+ GP LPG S PG A L G A LPG
Sbjct: 269 PKGELGPVGNPGPAGPA------GPRGEAGLPGLSGPVGPPGNPGANGLTGAKGATGLPG 322
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
+ AP LPGP +PGP A GP PGP+ + G + PG + A
Sbjct: 323 VAGAPGLPGPRG---IPGPVGAAGATGPRGLVGEPGPAGS---KGETGNKGEPGSAGAQG 376
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
PGPS G P GP+ P L G + LPG + GP GP+
Sbjct: 377 PPGPSGEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLPGADGRAGVMGPPGNRGSTGPAG 436
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
+ GP+ PG P L GP P PG
Sbjct: 437 ---VRGPNGDAGRPG---EPGLMGPRGLPGSPG 463
Score = 32.3 bits (72), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 68/188 (36%), Gaps = 15/188 (7%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSS 79
RP EP L GP P PG GP P + PGP G + PGP
Sbjct: 446 RPGEPGLMGPRGLPGSPGNVGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPK- 504
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
GPS P PG P L G AP G + A PGP + G G
Sbjct: 505 -----GPSGDPGKPGEKGHPGLAGARGAPGPDGNNGAQGPPGPQG---VQGGKGEQGPAG 556
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
P LPGPS G LPG P GP PG S A GPS
Sbjct: 557 PPGFQGLPGPSGTAGEVGKPGERGLPGEFGLPGPAGPRGERGPPGESGA---AGPSGPIG 613
Query: 200 LPGPSSAP 207
+ GPS AP
Sbjct: 614 IRGPSGAP 621
>sp|P17139|CO4A1_CAEEL Collagen alpha-1(IV) chain OS=Caenorhabditis elegans GN=emb-9 PE=1
SV=4
Length = 1759
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 76/214 (35%), Gaps = 8/214 (3%)
Query: 36 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 95
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1321 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1374
Query: 96 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 155
+ P G P G S PG P + GP PG LPG L
Sbjct: 1375 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1434
Query: 156 PGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 213
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1435 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1494
Query: 214 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
P G G + P LPG P PG
Sbjct: 1495 GMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1528
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 76/214 (35%), Gaps = 8/214 (3%)
Query: 54 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 113
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1321 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1374
Query: 114 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 173
+ P G P G S PG P + GP PG LPG L
Sbjct: 1375 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1434
Query: 174 PGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1435 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1494
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
P G G + P LPG P PG
Sbjct: 1495 GMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1528
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 76/214 (35%), Gaps = 8/214 (3%)
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1321 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1374
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
+ P G P G S PG P + GP PG LPG L
Sbjct: 1375 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1434
Query: 192 PGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1435 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1494
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
P G G + P LPG P PG
Sbjct: 1495 GMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1528
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 78/216 (36%), Gaps = 9/216 (4%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
LP ER L P L G LPG AP +PG P L G PG AP P
Sbjct: 1320 LPGYPGERGL-PGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAP 1372
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G + P G P G S PG P + GP PG LPG
Sbjct: 1373 GSNGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGRE 1432
Query: 136 DLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
LPGP + + PG PG P LPG + PG + P PG P PG
Sbjct: 1433 GLPGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPG 1492
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
S P G G + P LPG P PG
Sbjct: 1493 LSGMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPG 1528
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 97/296 (32%), Gaps = 47/296 (15%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDL--PGPSSA 80
P + G P +PG + P L G P L G + PG P SA L PG
Sbjct: 1154 PGQQGREGEKGYPGIPGENGLPGLRGQDGQPGLKGENGLDGQPGYPGSAGQLGTPGDVGY 1213
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-------------------PSS-APDLP 120
P PG + G P L G S P PG P + D+
Sbjct: 1214 PGAPGENGDNGNQGRDGQPGLRGESGQPGQPGLPGRDGQPGPVGPPGDDGYPGAPGQDIY 1273
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------------PDLPGPS 168
GP PG + PG P PG + P PG P PG
Sbjct: 1274 GP------PGQAGQDGYPGLDGLPGAPGLNGEPGSPGQYGMPGLPGGPGESGLPGYPGER 1327
Query: 169 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
P L G LPG AP +PG P L G PG AP PG + P
Sbjct: 1328 GLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGSNGYPGER 1381
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
G P G S PG P + GP PG LPG LPGP
Sbjct: 1382 GLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGLPGP 1437
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 65/182 (35%), Gaps = 8/182 (4%)
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1321 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1374
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
+ P G P G S PG P + GP PG LPG L
Sbjct: 1375 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1434
Query: 237 PGPSS--APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
PGP + + PG PG P LPG + PG + P PG P PG S
Sbjct: 1435 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS 1494
Query: 295 ST 296
Sbjct: 1495 GM 1496
Score = 39.7 bits (91), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 71/205 (34%), Gaps = 11/205 (5%)
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
P PG P L G LPG AP +PG P L G PG AP PG
Sbjct: 1321 PGYPGERGLPGLDGKRGHDGLPG---APGVPGVEGVPGLEGDCGEDGYPG---APGAPGS 1374
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
+ P G P G S PG P + GP PG LPG L
Sbjct: 1375 NGYPGERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGL 1434
Query: 210 PGPSS--APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
PGP + + PG PG P LPG + PG + P PG PGP
Sbjct: 1435 PGPMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDG---YPGPP 1491
Query: 268 SAPDLPGPSSAPDLPGPSSAPDLPG 292
+PG G + PG
Sbjct: 1492 GLSGMPGHGGDQGFQGAAGRTGNPG 1516
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 53/146 (36%), Gaps = 9/146 (6%)
Query: 114 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 173
+ P L G S P LPG +PG P L G PG P PG
Sbjct: 1106 TGMPGLKGESGLPGLPGRQGNDGIPG---QPGLEGECGEDGFPGSPGQPGYPGQQG---R 1159
Query: 174 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDL--PGPSSAPDLPGP 230
G P +PG + P L G P L G + PG P SA L PG P PG
Sbjct: 1160 EGEKGYPGIPGENGLPGLRGQDGQPGLKGENGLDGQPGYPGSAGQLGTPGDVGYPGAPGE 1219
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ G P L G S P PG
Sbjct: 1220 NGDNGNQGRDGQPGLRGESGQPGQPG 1245
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 53/146 (36%), Gaps = 9/146 (6%)
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
+ P L G S P LPG +PG P L G PG P PG
Sbjct: 1106 TGMPGLKGESGLPGLPGRQGNDGIPG---QPGLEGECGEDGFPGSPGQPGYPGQQG---R 1159
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDL--PGPSSAPDLPGP 248
G P +PG + P L G P L G + PG P SA L PG P PG
Sbjct: 1160 EGEKGYPGIPGENGLPGLRGQDGQPGLKGENGLDGQPGYPGSAGQLGTPGDVGYPGAPGE 1219
Query: 249 SSAPDLPGPSSAPDLPGPSSAPDLPG 274
+ G P L G S P PG
Sbjct: 1220 NGDNGNQGRDGQPGLRGESGQPGQPG 1245
Score = 36.2 bits (82), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 66/183 (36%), Gaps = 16/183 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPD-- 82
PG PG P PG AP GP AP PG A D+ + D
Sbjct: 41 CPGTKGERGNPGFGGEPGHPG---APGQDGPEGAPGAPGMFGAEGDFGDMGSKGARGDRG 97
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG P L G P L G P G P +PG + P G + P PG S
Sbjct: 98 LPGSPGHPGLQGLDGLPGLKGEEGIPGCNGTDGFPGMPGLAGPPGQSGQNGNPGRPGLSG 157
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
P G +S G G S P LPG S P L G A PGP P PG
Sbjct: 158 PPGEGGVNSQ----GRKGVKGESGRSGVPGLPGNSGYPGLKG---AKGDPGPYGLPGFPG 210
Query: 203 PSS 205
S
Sbjct: 211 VSG 213
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 63/180 (35%), Gaps = 24/180 (13%)
Query: 16 LPSTVTER-----------PLEPDLPGPSSAPDLPGPSSAP----DLPGPSSAPD--LPG 58
P T ER P P GP AP PG A D+ + D LPG
Sbjct: 41 CPGTKGERGNPGFGGEPGHPGAPGQDGPEGAPGAPGMFGAEGDFGDMGSKGARGDRGLPG 100
Query: 59 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 118
P L G P L G P G P +PG + P G + P PG S P
Sbjct: 101 SPGHPGLQGLDGLPGLKGEEGIPGCNGTDGFPGMPGLAGPPGQSGQNGNPGRPGLSGPPG 160
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
G +S G G S P LPG S P L G A PGP P PG S
Sbjct: 161 EGGVNSQ----GRKGVKGESGRSGVPGLPGNSGYPGLKG---AKGDPGPYGLPGFPGVSG 213
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 66/210 (31%), Gaps = 30/210 (14%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------PGPSSAPD 82
LPGP P G P PG + + G AP PG L G P
Sbjct: 845 LPGPDGYPGRDGLPGTPGYPGEAG---MNGQDGAPGQPGSRGESGLVGIDGKKGRDGTPG 901
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
G P G + AP G P PG P PG PGPS P G
Sbjct: 902 TRGQDGGPGYSGEAGAPGQNGMDGYPGAPGDQGYPGSPGQDG---YPGPSGIPGEDGLVG 958
Query: 143 APDLPGPSSAPDLP------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
P L G LP G P PG LPG LPG P
Sbjct: 959 FPGLRGEHGDNGLPGLEGECGEEGSRGLDGVPGYPGEHGTDGLPG------LPGADGQPG 1012
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
G + P PG P PG + P PG
Sbjct: 1013 FVGEAGEPGTPGYRGQPGEPGNLAYPGQPG 1042
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 90/306 (29%), Gaps = 59/306 (19%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
G P G P G + AP G P PG P PG PGPS P
Sbjct: 895 GRDGTPGTRGQDGGPGYSGEAGAPGQNGMDGYPGAPGDQGYPGSPGQDG---YPGPSGIP 951
Query: 100 DLPGPSSAPDLPGPSSAPDLP------------GPSSAPDLPGPSSA---PDLPGPSSAP 144
G P L G LP G P PG P LPG P
Sbjct: 952 GEDGLVGFPGLRGEHGDNGLPGLEGECGEEGSRGLDGVPGYPGEHGTDGLPGLPGADGQP 1011
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------------PSSAPDLPGPS--- 186
G + P PG P PG + P PG P L G
Sbjct: 1012 GFVGEAGEPGTPGYRGQPGEPGNLAYPGQPGDVGYPGPDGPPGLPGQDGLPGLNGERGDN 1071
Query: 187 --SAPDLPGPSSAPDLPGP---------------SSAPDLPGPSSAPDLPGPSSAPDLPG 229
S P PG S P G + P L G S P LPG +PG
Sbjct: 1072 GDSYPGNPGLSGQPGDAGYDGLDGVPGPPGYPGITGMPGLKGESGLPGLPGRQGNDGIPG 1131
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
P L G PG P PG G P +PG + P L G P
Sbjct: 1132 ---QPGLEGECGEDGFPGSPGQPGYPGQQG---REGEKGYPGIPGENGLPGLRGQDGQPG 1185
Query: 290 LPGPSS 295
L G +
Sbjct: 1186 LKGENG 1191
Score = 32.0 bits (71), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 78/254 (30%), Gaps = 38/254 (14%)
Query: 26 EPDLPG-----------PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 74
EP L G + PG P G + A LPGP P G P
Sbjct: 804 EPGLDGYPGAPGAPGAPGETGFGFPGQVGYPGPNGDAGAAGLPGPDGYPGRDGLPGTPGY 863
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
PG + + G AP PG L G G P G P G + A
Sbjct: 864 PGEAG---MNGQDGAPGQPGSRGESGLVGIDGK---KGRDGTPGTRGQDGGPGYSGEAGA 917
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-- 192
P G P PG P PG PGPS P G P L G LP
Sbjct: 918 PGQNGMDGYPGAPGDQGYPGSPGQDG---YPGPSGIPGEDGLVGFPGLRGEHGDNGLPGL 974
Query: 193 ----------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
G P PG LPG LPG P G + P PG
Sbjct: 975 EGECGEEGSRGLDGVPGYPGEHGTDGLPG------LPGADGQPGFVGEAGEPGTPGYRGQ 1028
Query: 243 PDLPGPSSAPDLPG 256
P PG + P PG
Sbjct: 1029 PGEPGNLAYPGQPG 1042
>sp|P08122|CO4A2_MOUSE Collagen alpha-2(IV) chain OS=Mus musculus GN=Col4a2 PE=2 SV=4
Length = 1707
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 91/282 (32%), Gaps = 24/282 (8%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
LPG LPG + AP G P +PG P PGPS P GP PG
Sbjct: 784 LPGQPGLKGLPGETGAPGFRGSQGMPGMPGLKGQPGFPGPSGQPGQSGPPGQHGFPG--- 840
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P GP P PG P G P +PGP L G + G P PG
Sbjct: 841 TPGREGPLGQPGSPGLGGLPGDRGEPGDPGVPGPVGMKGLSGDRGDAGMSGERGHPGSPG 900
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
+PG P G +P + G L G P G + +PG P
Sbjct: 901 FKGMAGMPG---IPGQKGDRGSPGMDGFQGMLGLKGRQGFPGTKGEAGFFGVPGLKGLPG 957
Query: 209 LPGPSS-----------------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
PG D+ G G L G P +PG S
Sbjct: 958 EPGVKGNRGDRGPPGPPPLILPGMKDIKGEKGDEGPMGLKGYLGLKGIQGMPGVPGVSGF 1017
Query: 252 PDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P LPG P + G P PG P + GP PG
Sbjct: 1018 PGLPGRPGFIKGVKGDIGVPGTPGLPGFPGVSGPPGITGFPG 1059
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 96/258 (37%), Gaps = 25/258 (9%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
DLPG +P L G +PG G + PG + + G +P L G +
Sbjct: 1093 DLPG---SPGLKGERGITGIPGLKGFFGEKGAAGDIGFPGITG---MAGAQGSPGLKGQT 1146
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
P L G PG P G P +PG P + G S LPG P P
Sbjct: 1147 GFPGLTGLQGPQGEPGRIGIPGDKGDFGWPGVPGLPGFPGIRGISGLHGLPGTKGFPGSP 1206
Query: 148 GPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--- 202
G + D PGP+ D A LPGP P G P GP+ +P L G
Sbjct: 1207 GVDAHGDPGFPGPTG--DRGDRGEANTLPGPVGVPGQKGERGTPGERGPAGSPGLQGFPG 1264
Query: 203 ---PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPG 256
PS+ PG AP + G L G P PGP++ P + G S A PG
Sbjct: 1265 ISPPSNISGSPGDVGAPGIFG------LQGYQGPPGPPGPNALPGIKGDEGSSGAAGFPG 1318
Query: 257 PSSAPDLPGPSSAPDLPG 274
PGP P + G
Sbjct: 1319 QKGWVGDPGPQGQPGVLG 1336
Score = 39.3 bits (90), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 83/234 (35%), Gaps = 17/234 (7%)
Query: 65 LPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 123
L G P +PG S P LPG P + G P PG P + GP PG +
Sbjct: 1002 LKGIQGMPGVPGVSGFPGLPGRPGFIKGVKGDIGVPGTPGLPGFPGVSGP------PGIT 1055
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
P G PG + GP+ D DLPG +P L G +P
Sbjct: 1056 GFPGFTGSRGEKGTPGVAGVFGETGPTG--DFGDIGDTVDLPG---SPGLKGERGITGIP 1110
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
G G + PG + + G +P L G + P L G PG P
Sbjct: 1111 GLKGFFGEKGAAGDIGFPGITG---MAGAQGSPGLKGQTGFPGLTGLQGPQGEPGRIGIP 1167
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSS 295
G P +PG P + G S LPG P PG + D PGP+
Sbjct: 1168 GDKGDFGWPGVPGLPGFPGIRGISGLHGLPGTKGFPGSPGVDAHGDPGFPGPTG 1221
Score = 38.9 bits (89), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 97/279 (34%), Gaps = 35/279 (12%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+ G +P L G + P L G PG P G P +PG P + G S
Sbjct: 1133 MAGAQGSPGLKGQTGFPGLTGLQGPQGEPGRIGIPGDKGDFGWPGVPGLPGFPGIRGISG 1192
Query: 89 APDLPGPSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
LPG P PG + D PGP+ D A LPGP P G P
Sbjct: 1193 LHGLPGTKGFPGSPGVDAHGDPGFPGPTG--DRGDRGEANTLPGPVGVPGQKGERGTPGE 1250
Query: 147 PGPSSAPDLPG------PSSAPDLPGPSSAPDLPG------------PSSAPDLP---GP 185
GP+ +P L G PS+ PG AP + G P++ P + G
Sbjct: 1251 RGPAGSPGLQGFPGISPPSNISGSPGDVGAPGIFGLQGYQGPPGPPGPNALPGIKGDEGS 1310
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS----- 240
S A PG PGP P + G G GPS A GP
Sbjct: 1311 SGAAGFPGQKGWVGDPGPQGQPGVLGLPGEKGPKGEQGFMGNTGPSGAVGDRGPKGPKGD 1370
Query: 241 -SAPDLPGPSSAPDLPG----PSSAPDLPGPSSAPDLPG 274
P PG +P +PG + P GP LPG
Sbjct: 1371 QGFPGAPGSMGSPGIPGIPQKIAVQPGTLGPQGRRGLPG 1409
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 85/280 (30%), Gaps = 43/280 (15%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD-------- 82
G P PG S L G PG PGP P GP +
Sbjct: 697 GVRGMPGFPGASGEQGLKG------FPGDPGREGFPGP---PGFMGPRGSKGTTGLPGPD 747
Query: 83 -------------------LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 123
+PG PG LPG LPG + AP G
Sbjct: 748 GPPGPIGLPGPAGPPGDRGIPGEVLGAQ-PGTRGDAGLPGQPGLKGLPGETGAPGFRGSQ 806
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
P +PG P PGPS P GP PG P GP P PG P
Sbjct: 807 GMPGMPGLKGQPGFPGPSGQPGQSGPPGQHGFPG---TPGREGPLGQPGSPGLGGLPGDR 863
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
G P +PGP L G + G P PG +PG P G +P
Sbjct: 864 GEPGDPGVPGPVGMKGLSGDRGDAGMSGERGHPGSPGFKGMAGMPG---IPGQKGDRGSP 920
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
+ G L G P G + +PG P PG
Sbjct: 921 GMDGFQGMLGLKGRQGFPGTKGEAGFFGVPGLKGLPGEPG 960
Score = 32.7 bits (73), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 98/324 (30%), Gaps = 63/324 (19%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------------------PDLPG 67
+P PGPS P GP PG P GP P +PG
Sbjct: 817 QPGFPGPSGQPGQSGPPGQHGFPG---TPGREGPLGQPGSPGLGGLPGDRGEPGDPGVPG 873
Query: 68 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 127
P L G + G P PG +PG P G +P + G
Sbjct: 874 PVGMKGLSGDRGDAGMSGERGHPGSPGFKGMAGMPG---IPGQKGDRGSPGMDGFQGMLG 930
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-----------------APDLPGPSSA 170
L G P G + +PG P PG D+ G
Sbjct: 931 LKGRQGFPGTKGEAGFFGVPGLKGLPGEPGVKGNRGDRGPPGPPPLILPGMKDIKGEKGD 990
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPG 229
G L G P +PG S P LPG P + G P PG P + G
Sbjct: 991 EGPMGLKGYLGLKGIQGMPGVPGVSGFPGLPGRPGFIKGVKGDIGVPGTPGLPGFPGVSG 1050
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-------APDLPGPSSAPDLP 282
P PG + P G PG + GP+ DLPG +P L
Sbjct: 1051 P------PGITGFPGFTGSRGEKGTPGVAGVFGETGPTGDFGDIGDTVDLPG---SPGLK 1101
Query: 283 GPSSAPDLPGPSSTVLGSYLGEAG 306
G +PG L + GE G
Sbjct: 1102 GERGITGIPG-----LKGFFGEKG 1120
>sp|O46392|CO1A2_CANFA Collagen alpha-2(I) chain OS=Canis familiaris GN=COL1A2 PE=2 SV=2
Length = 1366
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 103/276 (37%), Gaps = 18/276 (6%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
GP LPG S PG A L G A LPG + AP LPGP +PGP A
Sbjct: 280 GPRGEVGLPGVSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRG---IPGPVGAA 336
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
G PGP+ + G S PG + A PGPS GP+ GPS
Sbjct: 337 GATGARGIVGEPGPAGSK---GESGNKGEPGSAGAQGPPGPSGEEGKRGPNGEAGSAGPS 393
Query: 151 SAPDL---PGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPS 204
P L PG P GP+ PGP A + GP+ PG P L GP
Sbjct: 394 GPPGLRGSPGSRGLPGADGPAGVMGPPGPRGATGPAGVRGPNGDSGRPG---EPGLMGPR 450
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
P PG GP LPG P GP+ A PG P GP+ P
Sbjct: 451 GFPGAPGNVGPAGKEGPMG---LPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKN 507
Query: 265 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGS 300
G L G AP G + A PGP G
Sbjct: 508 GDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGK 543
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 102/275 (37%), Gaps = 24/275 (8%)
Query: 35 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 94
A L G A LPG + AP LPGP +PGP A G PGP+ + G
Sbjct: 302 ANGLTGAKGAAGLPGVAGAPGLPGPRG---IPGPVGAAGATGARGIVGEPGPAGSK---G 355
Query: 95 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSS 151
S PG + A PGPS GP+ GPS P L PG P GP+
Sbjct: 356 ESGNKGEPGSAGAQGPPGPSGEEGKRGPNGEAGSAGPSGPPGLRGSPGSRGLPGADGPAG 415
Query: 152 APDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
PGP A + GP+ PG P L GP P PG GP
Sbjct: 416 VMGPPGPRGATGPAGVRGPNGDSGRPG---EPGLMGPRGFPGAPGNVGPAGKEGPMG--- 469
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
LPG P GP+ A PG P GP+ P G L G AP G +
Sbjct: 470 LPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNG 529
Query: 269 APDLPGPSSAPDLP------GPSSAPDLPGPSSTV 297
A PGP GP LPGP+ T
Sbjct: 530 AQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPAGTA 564
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 104/286 (36%), Gaps = 47/286 (16%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP- 84
+P PG P PG + PG + A LPG PGP+ A G S P P
Sbjct: 191 QPGAPGVKGEPGAPGENG---TPGQTGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPA 246
Query: 85 ---------------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 123
GP P GP+ GP LPG S PG
Sbjct: 247 GPIGSAGPPGFPGAPGPKGEIGPVGNPGPAGPA------GPRGEVGLPGVSGPVGPPGNP 300
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
A L G A LPG + AP LPGP +PGP A G PGP+ +
Sbjct: 301 GANGLTGAKGAAGLPGVAGAPGLPGPRG---IPGPVGAAGATGARGIVGEPGPAGS---K 354
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPS 240
G S PG + A PGPS GP+ GPS P L PG P GP+
Sbjct: 355 GESGNKGEPGSAGAQGPPGPSGEEGKRGPNGEAGSAGPSGPPGLRGSPGSRGLPGADGPA 414
Query: 241 SAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
PGP A + GP+ PG P L GP P PG
Sbjct: 415 GVMGPPGPRGATGPAGVRGPNGDSGRPG---EPGLMGPRGFPGAPG 457
Score = 35.8 bits (81), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 103/288 (35%), Gaps = 44/288 (15%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----------------- 66
P E PG + A LPG PGP+ A G S P P
Sbjct: 204 PGENGTPGQTGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPG 262
Query: 67 -----GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 121
GP P GP+ GP LPG S PG A L G A LPG
Sbjct: 263 PKGEIGPVGNPGPAGPA------GPRGEVGLPGVSGPVGPPGNPGANGLTGAKGAAGLPG 316
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
+ AP LPGP +PGP A G PGP+ + G S PG + A
Sbjct: 317 VAGAPGLPGPRG---IPGPVGAAGATGARGIVGEPGPAGS---KGESGNKGEPGSAGAQG 370
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSA---PD 235
PGPS GP+ GPS P L PG P GP+ PGP A
Sbjct: 371 PPGPSGEEGKRGPNGEAGSAGPSGPPGLRGSPGSRGLPGADGPAGVMGPPGPRGATGPAG 430
Query: 236 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
+ GP+ PG P L GP P PG GP P + G
Sbjct: 431 VRGPNGDSGRPG---EPGLMGPRGFPGAPGNVGPAGKEGPMGLPGIDG 475
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 101/304 (33%), Gaps = 56/304 (18%)
Query: 29 LPGPSSAPDLPGPS------------------SAPDLPGPSSAPDLPGPSSAPDLPGPSS 70
GP+ P PG + P PG + GP A PG
Sbjct: 113 FQGPAGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPG 172
Query: 71 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
P G L G P PG P PG + PG + A LPG PG
Sbjct: 173 LPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG---TPGQTGARGLPGERGRVGAPG 229
Query: 131 PSSAPDLPGPSSAPDLP----------------------GPSSAPDLPGPSSAPDLPGPS 168
P+ A G S P P GP P GP+ GP
Sbjct: 230 PAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGEIGPVGNPGPAGPA------GPR 282
Query: 169 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
LPG S PG A L G A LPG + AP LPGP +PGP A
Sbjct: 283 GEVGLPGVSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRG---IPGPVGAAGAT 339
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
G PGP+ + G S PG + A PGPS GP+ GPS P
Sbjct: 340 GARGIVGEPGPAGS---KGESGNKGEPGSAGAQGPPGPSGEEGKRGPNGEAGSAGPSGPP 396
Query: 289 DLPG 292
L G
Sbjct: 397 GLRG 400
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 100/317 (31%), Gaps = 72/317 (22%)
Query: 39 PGPSSAPD---LPGPSSAPDLPGPS------------------SAPDLPGPSSAPDLPGP 77
PG S AP GP+ P PG + P PG + GP
Sbjct: 102 PGASGAPGPQGFQGPAGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVVGP 161
Query: 78 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 137
A PG P G L G P PG P PG + PG + A L
Sbjct: 162 QGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG---TPGQTGARGL 218
Query: 138 PGPSSAPDLPGPSSAPDL------------------------------------------ 155
PG PGP+ A
Sbjct: 219 PGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGPVGNPGPAGP 278
Query: 156 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 215
GP LPG S PG A L G A LPG + AP LPGP +PGP A
Sbjct: 279 AGPRGEVGLPGVSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRG---IPGPVGA 335
Query: 216 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 275
G PGP+ + G S PG + A PGPS GP+ GP
Sbjct: 336 AGATGARGIVGEPGPAGS---KGESGNKGEPGSAGAQGPPGPSGEEGKRGPNGEAGSAGP 392
Query: 276 SSAPDLPGPSSAPDLPG 292
S P L G + LPG
Sbjct: 393 SGPPGLRGSPGSRGLPG 409
Score = 32.7 bits (73), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 87/246 (35%), Gaps = 15/246 (6%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGP 86
PG + A PGPS GP+ GPS P L PG P GP+ PGP
Sbjct: 363 PGSAGAQGPPGPSGEEGKRGPNGEAGSAGPSGPPGLRGSPGSRGLPGADGPAGVMGPPGP 422
Query: 87 SSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
A + GP+ PG P L GP P PG GP LPG
Sbjct: 423 RGATGPAGVRGPNGDSGRPG---EPGLMGPRGFPGAPGNVGPAGKEGPMG---LPGIDGR 476
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
P GP+ A PG P GP+ P G L G AP G + A PGP
Sbjct: 477 PGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGP 536
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
+ G GP LPGP+ G LPG P GP
Sbjct: 537 QG---VQGGKGEQGPAGPPGFQGLPGPAGTAGEVGKPGERGLPGEFGLPGPAGPRGERGP 593
Query: 264 PGPSSA 269
PG S A
Sbjct: 594 PGESGA 599
Score = 32.3 bits (72), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 98/272 (36%), Gaps = 21/272 (7%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P LPGP +PGP A G PGP+ + G S PG + A PGP
Sbjct: 321 PGLPGPRG---IPGPVGAAGATGARGIVGEPGPAGS---KGESGNKGEPGSAGAQGPPGP 374
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSA---PDLPGP 140
S GP+ GPS P L PG P GP+ PGP A + GP
Sbjct: 375 SGEEGKRGPNGEAGSAGPSGPPGLRGSPGSRGLPGADGPAGVMGPPGPRGATGPAGVRGP 434
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ PG P L GP P PG GP LPG P GP+ A
Sbjct: 435 NGDSGRPG---EPGLMGPRGFPGAPGNVGPAGKEGPMG---LPGIDGRPGPIGPAGARGE 488
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
PG P GP+ P G L G AP G + A PGP + G
Sbjct: 489 PGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQG---VQGGKGE 545
Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
GP LPGP+ G LPG
Sbjct: 546 QGPAGPPGFQGLPGPAGTAGEVGKPGERGLPG 577
>sp|Q05722|CO9A1_MOUSE Collagen alpha-1(IX) chain OS=Mus musculus GN=Col9a1 PE=2 SV=2
Length = 921
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 81/251 (32%), Gaps = 20/251 (7%)
Query: 50 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 109
P+S P PG S P LPG G P G G GP
Sbjct: 412 PNSCP--PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGP----- 464
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPG 166
PGP + G G PGP P G P GP + G
Sbjct: 465 -PGPQGLRGITGIVGDKGEKGARGFDGEPGPQGIPGAAGDQGQRGPPGETGPKGDRGIQG 523
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 226
P PGP LPG +PG +PG PGP L G P
Sbjct: 524 SRGIPGSPGPKGDTGLPGVDGRDGIPG------MPGTKGEAGKPGPPGDVGLQGLPGVPG 577
Query: 227 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
+PG G + AP PG + PG P GP LPG S P GP
Sbjct: 578 IPGAKGVAGEKGNTGAPGKPGQLGSSGKPGQQGPPGEVGPRGPRGLPG-SRGP--VGPEG 634
Query: 287 APDLPGPSSTV 297
+P +PG +V
Sbjct: 635 SPGIPGKLGSV 645
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 56/158 (35%), Gaps = 12/158 (7%)
Query: 30 PGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
PGP P G P GP + G P PGP LPG +PG
Sbjct: 492 PGPQGIPGAAGDQGQRGPPGETGPKGDRGIQGSRGIPGSPGPKGDTGLPGVDGRDGIPG- 550
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
+PG PGP L G P +PG G + AP PG +
Sbjct: 551 -----MPGTKGEAGKPGPPGDVGLQGLPGVPGIPGAKGVAGEKGNTGAPGKPGQLGSSGK 605
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
PG P GP LPG S P GP +P +PG
Sbjct: 606 PGQQGPPGEVGPRGPRGLPG-SRGP--VGPEGSPGIPG 640
Score = 36.6 bits (83), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 49/134 (36%), Gaps = 6/134 (4%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDL 83
P GP + G P PGP LPG P +PG PGP L
Sbjct: 510 PGETGPKGDRGIQGSRGIPGSPGPKGDTGLPGVDGRDGIPGMPGTKGEAGKPGPPGDVGL 569
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G P +PG G + AP PG + PG P GP LPG S
Sbjct: 570 QGLPGVPGIPGAKGVAGEKGNTGAPGKPGQLGSSGKPGQQGPPGEVGPRGPRGLPG-SRG 628
Query: 144 PDLPGPSSAPDLPG 157
P GP +P +PG
Sbjct: 629 P--VGPEGSPGIPG 640
>sp|P13941|CO3A1_RAT Collagen alpha-1(III) chain OS=Rattus norvegicus GN=Col3a1 PE=2
SV=3
Length = 1463
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 110/290 (37%), Gaps = 39/290 (13%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E LPGP P + GP+ P PG G + G + AP L G +
Sbjct: 237 RPGERGLPGP---PGIKGPAGIPGFPGMKGHRGFDGRNGEK---GETGAPGLKGENG--- 287
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---------- 132
LPG + AP GP AP G P LPG + A G + PGP
Sbjct: 288 LPGDNGAPGPMGPRGAP---GERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPG 344
Query: 133 --SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
A GP+ +P G PGP GP P G GP+ P
Sbjct: 345 SPGAKGEVGPAGSPGSNGSPGQRGEPGPQGHAGAQGPPGPPGNNGSPGGKGEMGPAGIPG 404
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS- 249
PG A PGP+ A PG PG + A PG A G + +P +PGP
Sbjct: 405 APGLLGARGPPGPAGANGAPGQRGPSGEPGKNGAKGEPG---ARGERGEAGSPGIPGPKG 461
Query: 250 -----SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
+P PG + P PG AP GP+ GP+ AP GP+
Sbjct: 462 EDGKDGSPGEPGANGVPGNPGERGAPGFRGPA------GPNGAPGEKGPA 505
>sp|Q28247|CO4A5_CANFA Collagen alpha-5(IV) chain OS=Canis familiaris GN=COL4A5 PE=2 SV=2
Length = 1691
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 71/195 (36%), Gaps = 35/195 (17%)
Query: 28 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
DL G PG P + GP LPG P PG S P LPGPS GP
Sbjct: 958 DLLGSKGEKGDPGLPGIPGVSGPKGYQGLPG---DPGQPGLSGQPGLPGPS------GPK 1008
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPGPS 132
P LPG P L GP P L G PGP P LPG
Sbjct: 1009 GNPGLPG---KPGLTGP---PGLKGSIGDMGFPGPQGVKGSPGPPGVPGQPGSPGLPGQK 1062
Query: 133 SAPDLPGPSSA--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
PG S P LPGP LPG P + G LPG P PG P
Sbjct: 1063 GEKGDPGVSGIGLPGLPGPKGEAGLPGYPGNPGIKGSMGDTGLPG---LPGTPGAKGQPG 1119
Query: 191 LPGPSSAPDLPGPSS 205
LPG P LPGP
Sbjct: 1120 LPGFPGTPGLPGPKG 1134
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 58/161 (36%), Gaps = 23/161 (14%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
P P +P PG S P LPGPS PG P L GP P L G PG
Sbjct: 980 PKGYQGLPGDPGQPGLSGQPGLPGPSGPKGNPGLPGKPGLTGP---PGLKGSIGDMGFPG 1036
Query: 77 PSSA---------------PDLPGPSSAPDLPGPSSA--PDLPGPSSAPDLPGPSSAPDL 119
P P LPG PG S P LPGP LPG P +
Sbjct: 1037 PQGVKGSPGPPGVPGQPGSPGLPGQKGEKGDPGVSGIGLPGLPGPKGEAGLPGYPGNPGI 1096
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
G LPG P PG P LPG P LPGP
Sbjct: 1097 KGSMGDTGLPG---LPGTPGAKGQPGLPGFPGTPGLPGPKG 1134
Score = 32.0 bits (71), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
LPGP LPG + G P PG P L G P + G P L G
Sbjct: 1271 LPGPEGPRGLPGNGG---IKGERGNPGQPGQPGLPGLKGDQGPPGIQGNPGRPGLNGMKG 1327
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPS 132
P LPG P + GPS P GP
Sbjct: 1328 DPGLPGVPGFPGMKGPSGVPGSAGPE 1353
>sp|P02461|CO3A1_HUMAN Collagen alpha-1(III) chain OS=Homo sapiens GN=COL3A1 PE=1 SV=4
Length = 1466
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 105/276 (38%), Gaps = 18/276 (6%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E LPGP P + GP+ P PG G + G + AP L G +
Sbjct: 238 RPGERGLPGP---PGIKGPAGIPGFPGMKGHRGFDGRNGEK---GETGAPGLKGENG--- 288
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
LPG + AP GP AP G P LPG + A G + PGP P G
Sbjct: 289 LPGENGAPGPMGPRGAP---GERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPG 345
Query: 143 APDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
+P G PG + AP PGP GP P + G GP+ P
Sbjct: 346 SPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPG 405
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPG 256
PG A PGP+ A PG PG + A PGP +PG A G
Sbjct: 406 APGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDG 465
Query: 257 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+P PG + P G AP GP+ +PG
Sbjct: 466 KDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 55/145 (37%), Gaps = 18/145 (12%)
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
GP+ P PG A PGP+ A PG PG + A PGP G
Sbjct: 399 GPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPR------GERGEA 452
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
+PG A G +P PG + P G AP GP+ GP+ P GP+
Sbjct: 453 GIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPA------GPNGIPGEKGPA 506
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPG 229
PGP+ GP A PG
Sbjct: 507 GERGAPGPA------GPRGAAGEPG 525
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 55/145 (37%), Gaps = 18/145 (12%)
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
GP+ P PG A PGP+ A PG PG + A PGP G
Sbjct: 399 GPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPR------GERGEA 452
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
+PG A G +P PG + P G AP GP+ GP+ P GP+
Sbjct: 453 GIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPA------GPNGIPGEKGPA 506
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPG 256
PGP+ GP A PG
Sbjct: 507 GERGAPGPA------GPRGAAGEPG 525
Score = 35.4 bits (80), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 96/261 (36%), Gaps = 24/261 (9%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
E LPG + AP GP A PG P LPG + A G + PGP P G
Sbjct: 286 ENGLPGENGAPGPMGPRGA---PGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAG 342
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
+P G PG + AP PGP GP P + G GP+
Sbjct: 343 FPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAG 402
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
P PG A PGP+ A PG PG + A PGP G +PG
Sbjct: 403 IPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPR------GERGEAGIPG 456
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
A G +P PG + P G AP GP+ GP+ P GP+
Sbjct: 457 VPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPA------GPNGIPGEKGPAGERG 510
Query: 263 LPGPSSAPDLPGPSSAPDLPG 283
PGP+ GP A PG
Sbjct: 511 APGPA------GPRGAAGEPG 525
>sp|P08125|COAA1_CHICK Collagen alpha-1(X) chain OS=Gallus gallus GN=COL10A1 PE=1 SV=4
Length = 674
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 71/177 (40%), Gaps = 21/177 (11%)
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
GP+ P GP+ GP LPG + LPGP D+ GP PG
Sbjct: 319 GPAGVPGELGPAGPQGNMGPQGLKGLPGENG---LPGPKG--DM-GPVGPAGFPGAKGER 372
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
LPG P PG LPGP P LPG G + P LPGP GP
Sbjct: 373 GLPGLDGKPGYPGEQG---LPGPKGHPGLPGQKGDT---GHAGHPGLPGPV------GPQ 420
Query: 241 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+PG + P GPS +PG PG AP G + AP LPGP+ V
Sbjct: 421 GVKGVPGINGEPGPRGPSG---IPGVRGPIGPPGMPGAPGAKGEAGAPGLPGPAGIV 474
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 82/218 (37%), Gaps = 35/218 (16%)
Query: 47 LPGPSSAPDLPG--PSSAPDLPGPSSAPDL------------PGPSSAPDLPGPSSAPDL 92
LPGP+ P PG P LPG GP+ P GP+
Sbjct: 276 LPGPAGLPGSPGLPGFGKPGLPGMKGHRGPEGPPGFPGPKGDQGPAGVPGELGPAGPQGN 335
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
GP LPG + LPGP D+ GP PG LPG P PG
Sbjct: 336 MGPQGLKGLPGENG---LPGPKG--DM-GPVGPAGFPGAKGERGLPGLDGKPGYPGEQG- 388
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
LPGP P LPG G + P LPGP GP +PG + P GP
Sbjct: 389 --LPGPKGHPGLPGQKGD---TGHAGHPGLPGPV------GPQGVKGVPGINGEPGPRGP 437
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
S +PG PG AP G + AP LPGP+
Sbjct: 438 SG---IPGVRGPIGPPGMPGAPGAKGEAGAPGLPGPAG 472
Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 58/155 (37%), Gaps = 30/155 (19%)
Query: 12 EADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 71
+ + P + P E LPGP D+ GP PG LPG P PG
Sbjct: 333 QGNMGPQGLKGLPGENGLPGPKG--DM-GPVGPAGFPGAKGERGLPGLDGKPGYPGEQG- 388
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
LPGP P LPG G + P LPGP GP +PG + P GP
Sbjct: 389 --LPGPKGHPGLPGQKGDT---GHAGHPGLPGPV------GPQGVKGVPGINGEPGPRGP 437
Query: 132 SSAPDL---------------PGPSSAPDLPGPSS 151
S P + G + AP LPGP+
Sbjct: 438 SGIPGVRGPIGPPGMPGAPGAKGEAGAPGLPGPAG 472
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 69/176 (39%), Gaps = 23/176 (13%)
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPD-LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
GP+ P GP+ P + P L G LPGP D+ GP PG
Sbjct: 319 GPAGVPGELGPAG----PQGNMGPQGLKGLPGENGLPGPKG--DM-GPVGPAGFPGAKGE 371
Query: 162 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 221
LPG P PG LPGP P LPG G + P LPGP GP
Sbjct: 372 RGLPGLDGKPGYPGEQG---LPGPKGHPGLPGQKGD---TGHAGHPGLPGPV------GP 419
Query: 222 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
+PG + P GPS +PG PG AP G + AP LPGP+
Sbjct: 420 QGVKGVPGINGEPGPRGPSG---IPGVRGPIGPPGMPGAPGAKGEAGAPGLPGPAG 472
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 84/261 (32%), Gaps = 70/261 (26%)
Query: 93 PGPSSAPDLPGPSSAPD-----LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
PG P +PG + +PG LPGP LPG S+ PG + P P
Sbjct: 166 PGEKGEPGVPGINGQKGEMGFGVPGRPGNRGLPGPQGPQGLPG-SAGIGKPGENGLPGQP 224
Query: 148 GPSSAPDLPGPSS-----------------------------------APDLPGPSSAPD 172
G LPG A LPGP+ P
Sbjct: 225 GMKGDRGLPGARGEAGIPGPQGPPGEPGEVGIGKPGPMGPPGPAGIPGAKGLPGPAGLPG 284
Query: 173 LPG--PSSAPDLPGPSSAPDL------------PGPSSAPDLPGPSSAPDLPGPSSAPDL 218
PG P LPG GP+ P GP+ GP L
Sbjct: 285 SPGLPGFGKPGLPGMKGHRGPEGPPGFPGPKGDQGPAGVPGELGPAGPQGNMGPQGLKGL 344
Query: 219 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 278
PG + LPGP D+ GP PG LPG P PG LPGP
Sbjct: 345 PGENG---LPGPKG--DM-GPVGPAGFPGAKGERGLPGLDGKPGYPGEQG---LPGPKGH 395
Query: 279 PDLPGP------SSAPDLPGP 293
P LPG + P LPGP
Sbjct: 396 PGLPGQKGDTGHAGHPGLPGP 416
>sp|P20849|CO9A1_HUMAN Collagen alpha-1(IX) chain OS=Homo sapiens GN=COL9A1 PE=1 SV=3
Length = 921
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 78/233 (33%), Gaps = 15/233 (6%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG S P LPG G P G G GP A L G +
Sbjct: 417 PGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGI 476
Query: 90 PDLPGPSSAPDL---PGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G A L PGP P PG P GP G P LPGP
Sbjct: 477 VGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGPKGD 536
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
LPG +PG +PG P PGP L G P +PG G
Sbjct: 537 TGLPGVDGRDGIPG------MPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGS 590
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ AP PG PG P GP LPG S +L GP +P LPG
Sbjct: 591 TGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLPG--SRGEL-GPVGSPGLPG 640
Score = 32.3 bits (72), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 50/134 (37%), Gaps = 6/134 (4%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSAPDL 83
P GP G P LPGP LPG P +PG P PGP L
Sbjct: 510 PGEAGPKGDRGAEGARGIPGLPGPKGDTGLPGVDGRDGIPGMPGTKGEPGKPGPPGDAGL 569
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G P +PG G + AP PG PG P GP LPG S
Sbjct: 570 QGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLPG--SR 627
Query: 144 PDLPGPSSAPDLPG 157
+L GP +P LPG
Sbjct: 628 GEL-GPVGSPGLPG 640
>sp|P30754|CAFF_RIFPA Fibril-forming collagen alpha chain (Fragment) OS=Riftia pachyptila
PE=1 SV=2
Length = 1027
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 105/276 (38%), Gaps = 29/276 (10%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P PG G A L GP S P + G + P +PG A PG S L
Sbjct: 177 PGTPGSKGDRGQSGIKGAQGLQGPVGLSGQPGVAGENGHPGMPGMDGANGEPGASGESGL 236
Query: 84 PGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPG 139
PGPS PGP P PG + A GP+ PG AP + G S P D+
Sbjct: 237 PGPSG---FPGPRGMPGTAGSPGQAGAKGDGGPTGEQGRPG---APGVKGSSGPPGDVGA 290
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSS 196
P A + G +P PGP+ +P GP LPG P + G S A +P GPS
Sbjct: 291 PGHAGEA-GKRGSPGSPGPAGSP---GPQGDRGLPGSRGLPGMTGASGAMGIPGEKGPSG 346
Query: 197 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
P GP+ G P + G LPG + PG P + G G
Sbjct: 347 EPGAKGPTGDTGRQGNQGTPGIAG------LPGNPGSDGRPGKDGRPGIRGKDGKQGEQG 400
Query: 257 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P L G GP A PG + AP PG
Sbjct: 401 PQGPQGLAGLQG---RAGPPGARGEPGKNGAPGEPG 433
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 84/205 (40%), Gaps = 25/205 (12%)
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 173
P PG G A L GP S P + G + P +PG A PG S L
Sbjct: 177 PGTPGSKGDRGQSGIKGAQGLQGPVGLSGQPGVAGENGHPGMPGMDGANGEPGASGESGL 236
Query: 174 PGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPG 229
PGPS PGP P PG + A GP+ PG AP + G S P D+
Sbjct: 237 PGPSG---FPGPRGMPGTAGSPGQAGAKGDGGPTGEQGRPG---APGVKGSSGPPGDVGA 290
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSS 286
P A + G +P PGP+ +P GP LPG P + G S A +P GPS
Sbjct: 291 PGHAGEA-GKRGSPGSPGPAGSP---GPQGDRGLPGSRGLPGMTGASGAMGIPGEKGPSG 346
Query: 287 APDLPGPSSTVLGSYLGEAGHQKSP 311
P GP+ G G+Q +P
Sbjct: 347 EPGAKGPTGDT-----GRQGNQGTP 366
>sp|P02457|CO1A1_CHICK Collagen alpha-1(I) chain OS=Gallus gallus GN=COL1A1 PE=1 SV=3
Length = 1453
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 86/220 (39%), Gaps = 12/220 (5%)
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGP 140
PG A PG + AP PG GPS AP G S P PG + A PGP
Sbjct: 383 PGAKGATGAPGIAGAPGFPGARGPSGPQGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGP 442
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ PGP+ G A PGP+ LPGP+ PG P G +
Sbjct: 443 AGVQGPPGPAGE---EGKRGARGEPGPAG---LPGPAGERGAPGSRGFPGADGIAGPKGP 496
Query: 201 PGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
PG +P GP +P PG + P G + +P PGP PGP+ PGP
Sbjct: 497 PGERGSPGAVGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGP 556
Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+ P G + PGP A PG PGP V
Sbjct: 557 AGPPGARGQAGVMGFPGPKGAAGEPGKPGERGAPGPPGAV 596
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 85/216 (39%), Gaps = 12/216 (5%)
Query: 48 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGP 104
PG A PG + AP PG GPS AP G S P PG + A PGP
Sbjct: 383 PGAKGATGAPGIAGAPGFPGARGPSGPQGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGP 442
Query: 105 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 164
+ PGP+ G A PGP+ LPGP+ PG P G +
Sbjct: 443 AGVQGPPGPAGE---EGKRGARGEPGPAG---LPGPAGERGAPGSRGFPGADGIAGPKGP 496
Query: 165 PGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 221
PG +P GP +P PG + P G + +P PGP PGP+ PGP
Sbjct: 497 PGERGSPGAVGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGP 556
Query: 222 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
+ P G + PGP A PG PGP
Sbjct: 557 AGPPGARGQAGVMGFPGPKGAAGEPGKPGERGAPGP 592
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 78/216 (36%), Gaps = 30/216 (13%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGP 86
PG A PG + AP PG GPS AP G S P PG + A PGP
Sbjct: 383 PGAKGATGAPGIAGAPGFPGARGPSGPQGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGP 442
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
+ PGP+ G A PGP+ LPGP+ PG P G +
Sbjct: 443 AGVQGPPGPAGEE---GKRGARGEPGPAG---LPGPAGERGAPGSRGFPGADGIAGPKGP 496
Query: 147 PGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS------- 196
PG +P GP +P PG + P G + +P PGP PGP+
Sbjct: 497 PGERGSPGAVGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGP 556
Query: 197 -----------APDLPGPSSAPDLPGPSSAPDLPGP 221
PGP A PG PGP
Sbjct: 557 AGPPGARGQAGVMGFPGPKGAAGEPGKPGERGAPGP 592
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 89/284 (31%), Gaps = 60/284 (21%)
Query: 66 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
PGP A LPG + P + G L G P GP P PG + AP GP
Sbjct: 236 PGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGQPGPAGPKGEPGSPGENGAPGQMGPRG- 294
Query: 126 PDLPGPSSAPDLPGPSSA------------------------------PDLPGPSSAPDL 155
LPG P GP+ A GP A
Sbjct: 295 --LPGERGRPGPSGPAGARGNDGAPGAAGPPGPTGPAGPPGFPGAAGAKGETGPQGARGS 352
Query: 156 PGPSSAP---------------------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
GP + PG A PG + AP PG GP
Sbjct: 353 EGPQGSRGEPGPPGPAGAAGPAGNPGADGQPGAKGATGAPGIAGAPGFPGARGPSGPQGP 412
Query: 195 SSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGP 248
S AP G S P PG + A PGP+ PGP+ G P LPGP
Sbjct: 413 SGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPAGLPGP 472
Query: 249 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+ PG P G + PG +P GP +P G
Sbjct: 473 AGERGAPGSRGFPGADGIAGPKGPPGERGSPGAVGPKGSPGEAG 516
>sp|Q8IZC6|CORA1_HUMAN Collagen alpha-1(XXVII) chain OS=Homo sapiens GN=COL27A1 PE=2 SV=1
Length = 1860
Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 67/200 (33%), Gaps = 3/200 (1%)
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
LPG S P PG PGP+ P PGP +P G LPGP P G
Sbjct: 695 LPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKG 754
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
LPG P G P +PG +PG GP PG P
Sbjct: 755 SRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGMPGFPGVFGERGPPGLDGNPGELGLPG 814
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
PG G PGP L G P L G +PG S P G
Sbjct: 815 PPGVPGLIGDLGVLGPIGYPGPKGMKGLMGSVGEPGLKGDKGEQGVPGVSGDPGFQGDKG 874
Query: 278 APDLPGPSSAPDLPGPSSTV 297
+ LPG A PGP V
Sbjct: 875 SQGLPGFPGARGKPGPLGKV 894
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 62/189 (32%), Gaps = 27/189 (14%)
Query: 30 PGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
PG PGP+ P PGP +P G LPGP P G LPG
Sbjct: 705 PGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKGSRGYIGLPGL 764
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-------------PSS 133
P G P +PG +PG P + G P L G P
Sbjct: 765 FGLPGSDGERGLPGVPGKRGKMGMPG---FPGVFGERGPPGLDGNPGELGLPGPPGVPGL 821
Query: 134 APDL--------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
DL PGP L G P L G +PG S P G + LPG
Sbjct: 822 IGDLGVLGPIGYPGPKGMKGLMGSVGEPGLKGDKGEQGVPGVSGDPGFQGDKGSQGLPGF 881
Query: 186 SSAPDLPGP 194
A PGP
Sbjct: 882 PGARGKPGP 890
>sp|P02465|CO1A2_BOVIN Collagen alpha-2(I) chain OS=Bos taurus GN=COL1A2 PE=1 SV=2
Length = 1364
Score = 39.3 bits (90), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 66/189 (34%), Gaps = 32/189 (16%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E + GP A PG P G L G P PG P PG +
Sbjct: 150 RPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG--- 206
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---------------------- 120
PG + A LPG PGP+ A G S P P
Sbjct: 207 TPGQTGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGEL 265
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
GP P GP+ GP LPG S PG A LPG A LPG + AP
Sbjct: 266 GPVGNPGPAGPA------GPRGEVGLPGLSGPVGPPGNPGANGLPGAKGAAGLPGVAGAP 319
Query: 181 DLPGPSSAP 189
LPGP P
Sbjct: 320 GLPGPRGIP 328
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 66/194 (34%), Gaps = 32/194 (16%)
Query: 36 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 95
P PG + GP A PG P G L G P PG P PG
Sbjct: 145 PGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGE 204
Query: 96 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----------------- 138
+ PG + A LPG PGP+ A G S P P
Sbjct: 205 NG---TPGQTGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPG 260
Query: 139 -----GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
GP P GP+ GP LPG S PG A LPG A LPG
Sbjct: 261 PKGELGPVGNPGPAGPA------GPRGEVGLPGLSGPVGPPGNPGANGLPGAKGAAGLPG 314
Query: 194 PSSAPDLPGPSSAP 207
+ AP LPGP P
Sbjct: 315 VAGAPGLPGPRGIP 328
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 66/194 (34%), Gaps = 32/194 (16%)
Query: 54 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 113
P PG + GP A PG P G L G P PG P PG
Sbjct: 145 PGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGE 204
Query: 114 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----------------- 156
+ PG + A LPG PGP+ A G S P P
Sbjct: 205 NG---TPGQTGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPG 260
Query: 157 -----GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
GP P GP+ GP LPG S PG A LPG A LPG
Sbjct: 261 PKGELGPVGNPGPAGPA------GPRGEVGLPGLSGPVGPPGNPGANGLPGAKGAAGLPG 314
Query: 212 PSSAPDLPGPSSAP 225
+ AP LPGP P
Sbjct: 315 VAGAPGLPGPRGIP 328
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 66/194 (34%), Gaps = 32/194 (16%)
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
P PG + GP A PG P G L G P PG P PG
Sbjct: 145 PGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGE 204
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----------------- 183
+ PG + A LPG PGP+ A G S P P
Sbjct: 205 NG---TPGQTGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPG 260
Query: 184 -----GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
GP P GP+ GP LPG S PG A LPG A LPG
Sbjct: 261 PKGELGPVGNPGPAGPA------GPRGEVGLPGLSGPVGPPGNPGANGLPGAKGAAGLPG 314
Query: 239 PSSAPDLPGPSSAP 252
+ AP LPGP P
Sbjct: 315 VAGAPGLPGPRGIP 328
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 66/194 (34%), Gaps = 32/194 (16%)
Query: 108 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 167
P PG + GP A PG P G L G P PG P PG
Sbjct: 145 PGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGE 204
Query: 168 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----------------- 210
+ PG + A LPG PGP+ A G S P P
Sbjct: 205 NG---TPGQTGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPG 260
Query: 211 -----GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
GP P GP+ GP LPG S PG A LPG A LPG
Sbjct: 261 PKGELGPVGNPGPAGPA------GPRGEVGLPGLSGPVGPPGNPGANGLPGAKGAAGLPG 314
Query: 266 PSSAPDLPGPSSAP 279
+ AP LPGP P
Sbjct: 315 VAGAPGLPGPRGIP 328
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 83/242 (34%), Gaps = 36/242 (14%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
P+ + RP EP L GP P PG GP LPG P GP+ A PG
Sbjct: 432 PNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVG---LPGIDGRPGPIGPAGARGEPG 488
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
P GPS P G L G AP GP GP P L G
Sbjct: 489 NIGFPGPKGPSGDPGKAGEKGHAGLAGARGAP---GPDGNNGAQGP---PGLQGVQGGKG 542
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
GP+ P G LPGP+ G +PG LPGP+ A GP
Sbjct: 543 EQGPAGPPGFQG------LPGPAGTAGEAGKPGERGIPGEFG---LPGPAGARGERGP-- 591
Query: 197 APDLPGPSSAPDLPGP------------SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
PG S A GP PG AP GPS LPG A
Sbjct: 592 ----PGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAPGTAGPSGPSGLPGERGAAG 647
Query: 245 LP 246
+P
Sbjct: 648 IP 649
Score = 32.7 bits (73), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 90/263 (34%), Gaps = 36/263 (13%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 97
LPG + GP+ + GP+ + GP+ PG P L GP P PG
Sbjct: 405 LPGADGRAGVMGPAGSRGATGPAG---VRGPNGDSGRPG---EPGLMGPRGFPGSPGNIG 458
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
GP LPG P GP+ A PG P GPS P G L G
Sbjct: 459 PAGKEGPVG---LPGIDGRPGPIGPAGARGEPGNIGFPGPKGPSGDPGKAGEKGHAGLAG 515
Query: 158 PSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 214
AP G + A P L G GP+ P G LPGP+ G
Sbjct: 516 ARGAPGPDGNNGAQGPPGLQGVQGGKGEQGPAGPPGFQG------LPGPAGTAGEAGKPG 569
Query: 215 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---------------APDLPGPSS 259
+PG LPGP+ A GP GP+ PG
Sbjct: 570 ERGIPGEFG---LPGPAGARGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVG 626
Query: 260 APDLPGPSSAPDLPGPSSAPDLP 282
AP GPS LPG A +P
Sbjct: 627 APGTAGPSGPSGLPGERGAAGIP 649
Score = 32.7 bits (73), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 90/263 (34%), Gaps = 36/263 (13%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
LPG + GP+ + GP+ + GP+ PG P L GP P PG
Sbjct: 405 LPGADGRAGVMGPAGSRGATGPAG---VRGPNGDSGRPG---EPGLMGPRGFPGSPGNIG 458
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
GP LPG P GP+ A PG P GPS P G L G
Sbjct: 459 PAGKEGPVG---LPGIDGRPGPIGPAGARGEPGNIGFPGPKGPSGDPGKAGEKGHAGLAG 515
Query: 167 PSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 223
AP G + A P L G GP+ P G LPGP+ G
Sbjct: 516 ARGAPGPDGNNGAQGPPGLQGVQGGKGEQGPAGPPGFQG------LPGPAGTAGEAGKPG 569
Query: 224 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---------------APDLPGPSS 268
+PG LPGP+ A GP GP+ PG
Sbjct: 570 ERGIPGEFG---LPGPAGARGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVG 626
Query: 269 APDLPGPSSAPDLPGPSSAPDLP 291
AP GPS LPG A +P
Sbjct: 627 APGTAGPSGPSGLPGERGAAGIP 649
>sp|Q14050|CO9A3_HUMAN Collagen alpha-3(IX) chain OS=Homo sapiens GN=COL9A3 PE=2 SV=2
Length = 684
Score = 38.9 bits (89), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 275 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 334
Query: 107 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 151
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 335 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 382
Score = 38.9 bits (89), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 275 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 334
Query: 134 APDLPGPSSAPDLPGP-SSAPDL--PGPSSAPDLPGPSSAPDLPGPSS 178
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 335 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 382
Score = 38.9 bits (89), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
GP PGP P + GPS P +PG +PG G + AP GP+
Sbjct: 275 FRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNG 334
Query: 179 APDLPGPSSAPDLPGPSS-APDL--PGPSSAPDLPGPSSAPDLPGPSS 223
P LPG + + G A +L GPS P +PG + P G +
Sbjct: 335 LPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAG 382
>sp|Q80ZF0|CORA1_RAT Collagen alpha-1(XXVII) chain OS=Rattus norvegicus GN=Col27a1 PE=2
SV=1
Length = 1855
Score = 38.9 bits (89), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 58/174 (33%), Gaps = 6/174 (3%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P E PGP +P G PGP P G LPG P G P +
Sbjct: 714 PGEQGQPGPEGSPGAKGYPGRQGFPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGI 773
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGP 140
PG PG P G P L G LPGP L G A PGP
Sbjct: 774 PGKRGEMGRPG---FPGDFGERGPPGLDGNPGEIGLPGPPGVLGLLGDMGALGPVGYPGP 830
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
L G P L G +PG S P G + LPG A PGP
Sbjct: 831 KGMKGLMGGVGEPGLKGDKGEQGVPGVSGDPGFQGDKGSHGLPGFPGARGKPGP 884
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 70/214 (32%), Gaps = 11/214 (5%)
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSS 133
P A D G LPG + P G PG + P PGP +P G
Sbjct: 676 PGQAHD--GAKGNMGLPGLAGNPGPMGRKGHKGHPGAAGHPGEQGQPGPEGSPGAKGYPG 733
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
PGP P G LPG P G P +PG PG P G
Sbjct: 734 RQGFPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGIPGKRGEMGRPG---FPGDFG 790
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSS 250
P L G LPGP L G A PGP L G P L G
Sbjct: 791 ERGPPGLDGNPGEIGLPGPPGVLGLLGDMGALGPVGYPGPKGMKGLMGGVGEPGLKGDKG 850
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
+PG S P G + LPG A PGP
Sbjct: 851 EQGVPGVSGDPGFQGDKGSHGLPGFPGARGKPGP 884
Score = 35.4 bits (80), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 67/202 (33%), Gaps = 15/202 (7%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
LPG + P G PG + P PGP +P G PGP P G
Sbjct: 689 LPGLAGNPGPMGRKGHKGHPGAAGHPGEQGQPGPEGSPGAKGYPGRQGFPGPVGDPGPKG 748
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSS 142
LPG LPG LPG P G P P G P L G
Sbjct: 749 SRGYIGLPGLFG---LPGSDGERGLPG---IPGKRGEMGRPGFPGDFGERGPPGLDGNPG 802
Query: 143 APDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
LPGP L G A PGP L G P L G +PG S P
Sbjct: 803 EIGLPGPPGVLGLLGDMGALGPVGYPGPKGMKGLMGGVGEPGLKGDKGEQGVPGVSGDPG 862
Query: 200 LPGPSSAPDLPGPSSAPDLPGP 221
G + LPG A PGP
Sbjct: 863 FQGDKGSHGLPGFPGARGKPGP 884
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 74/242 (30%), Gaps = 24/242 (9%)
Query: 54 PDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 110
P PG L PG P PGP P GP + GP P G + A
Sbjct: 1357 PGYPGQEGVQGLRGEPGQQGQPGHPGPRGRP---GPKGSKGEEGPKGKP---GKAGASGR 1410
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 167
G LPGP GP PG P G PGP G
Sbjct: 1411 RGTQGLQGLPGPRGVVGRQGPEGMAGQDGNPGRDGRPGYQGEQGNDGDPGPVGPAGRRGN 1470
Query: 168 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 227
LPG P G S P GP G + P G + PG S
Sbjct: 1471 PGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGGTGLPGNQGEPGSKGQPGDSGEMGF 1530
Query: 228 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGP 284
PG + GP PG + GP P L G P + GPS LPGP
Sbjct: 1531 PGVAGLFGPKGP------PGDIGFKGIQGPRGPPGLMGKEGIIGPPGMLGPSG---LPGP 1581
Query: 285 SS 286
Sbjct: 1582 KG 1583
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 84/263 (31%), Gaps = 42/263 (15%)
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSS 142
P A D G LPG + P G PG + P PGP +P G
Sbjct: 676 PGQAHD--GAKGNMGLPGLAGNPGPMGRKGHKGHPGAAGHPGEQGQPGPEGSPGAKGYPG 733
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
PGP P G LPG P G P +PG PG P G
Sbjct: 734 RQGFPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGIPGKRGEMGRPG---FPGDFG 790
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSS 259
P L G LPGP L G A PGP L G P L G
Sbjct: 791 ERGPPGLDGNPGEIGLPGPPGVLGLLGDMGALGPVGYPGPKGMKGLMGGVGEPGLKGDKG 850
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKS--------- 310
+PG S P G + LPG A PGP +G+AG + S
Sbjct: 851 EQGVPGVSGDPGFQGDKGSHGLPGFPGARGKPGP--------MGKAGDKGSLGLPGPPGP 902
Query: 311 --------------PKGLEPKPA 319
P+G++ KP
Sbjct: 903 EGFPGDIGPPGDNGPEGMKGKPG 925
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 73/236 (30%), Gaps = 21/236 (8%)
Query: 72 PDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 128
P PG L PG P PGP P GP + GP P G + A
Sbjct: 1357 PGYPGQEGVQGLRGEPGQQGQPGHPGPRGRP---GPKGSKGEEGPKGKP---GKAGASGR 1410
Query: 129 PGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
G LPGP GP PG P G PGP G
Sbjct: 1411 RGTQGLQGLPGPRGVVGRQGPEGMAGQDGNPGRDGRPGYQGEQGNDGDPGPVGPAGRRGN 1470
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
LPG P G S P GP G + P G + PG S
Sbjct: 1471 PGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGGTGLPGNQGEPGSKGQPGDSGEMGF 1530
Query: 246 PGPSS--APDL-PGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSS 295
PG + P PG + GP P L G P + GPS LPGP
Sbjct: 1531 PGVAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIIGPPGMLGPSG---LPGPKG 1583
>sp|P08120|CO4A1_DROME Collagen alpha-1(IV) chain OS=Drosophila melanogaster GN=Cg25C PE=2
SV=3
Length = 1779
Score = 38.5 bits (88), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 81/265 (30%), Gaps = 26/265 (9%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
L G P PG G P +PGP G PG P G
Sbjct: 652 LKGDKGYPGAPGAKGVQGFKGAEGLPGIPGPKGEFGFKGEKGLSGAPGNDGTPGRAGRDG 711
Query: 116 APDLPGPS--SAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDL----------PGPSS 160
P +PG S P G A G S PG + ++ PG +
Sbjct: 712 YPGIPGQSIKGEPGFHGRDGAKGDKGSFGRSGEKGEPGSCALDEIKMPAKGNKGEPGQTG 771
Query: 161 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
P PG +P G + GP P + GP L GP G P PG
Sbjct: 772 MPGPPGEDGSPGERGYTGLKGNTGPQGPPGVEGPRG---LNGPRGEKGNQGAVGVPGNPG 828
Query: 221 PSSAPDLPGPSSAPD--------LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
+PG + P PGP P L G GP+ PG +
Sbjct: 829 KDGLRGIPGRNGQPGPRGEPGISRPGPMGPPGLNGLQGEKGDRGPTGPIGFPGADGSVGY 888
Query: 273 PGPSSAPDLPGPSSAPDLPGPSSTV 297
PG LPG S P + G V
Sbjct: 889 PGDRGDAGLPGVSGRPGIVGEKGDV 913
Score = 35.4 bits (80), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 90/286 (31%), Gaps = 29/286 (10%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---- 82
P +PG A PG PG + G + P G LPG + P
Sbjct: 587 PGIPGKDGARGPPGERG---YPGERGHDGINGQTGPPGEKGEDGRTGLPGATGEPGKPAL 643
Query: 83 --------LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
L G P PG G P +PGP G PG
Sbjct: 644 CDLSLIEPLKGDKGYPGAPGAKGVQGFKGAEGLPGIPGPKGEFGFKGEKGLSGAPGNDGT 703
Query: 135 PDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSA- 188
P G P +PG S P G A G S PG + ++ P+
Sbjct: 704 PGRAGRDGYPGIPGQSIKGEPGFHGRDGAKGDKGSFGRSGEKGEPGSCALDEIKMPAKGN 763
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
PG + P PG +P G + GP P + GP L GP G
Sbjct: 764 KGEPGQTGMPGPPGEDGSPGERGYTGLKGNTGPQGPPGVEGPRG---LNGPRGEKGNQGA 820
Query: 249 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL--PGPSSAPDLPG 292
P PG +PG + PGP P + PGP P L G
Sbjct: 821 VGVPGNPGKDGLRGIPGRNGQ---PGPRGEPGISRPGPMGPPGLNG 863
Score = 35.4 bits (80), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 84/263 (31%), Gaps = 26/263 (9%)
Query: 24 PLEPDLPGPSSAPDL--PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
P PGP P + PGP P L G GP+ PG + PG
Sbjct: 836 PGRNGQPGPRGEPGISRPGPMGPPGLNGLQGEKGDRGPTGPIGFPGADGSVGYPGDRGDA 895
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
LPG S P + G GP+ P +PG G P PG P
Sbjct: 896 GLPGVSGRPGIVGEKGDVGPIGPAGVAGPPGVPGIDGVRGRDGAKGEPGSPGLVGMPGNK 955
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAP------ 189
G AP GP G + AP GP+ P + G A L G
Sbjct: 956 GDRGAPGNDGPKG---FAGVTGAPGKRGPAGIPGVSGAKGDKGATGLTGNDGPVGGRGPP 1012
Query: 190 ------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPS 240
+ G PG +PG PG P LPG +S PGPS
Sbjct: 1013 GAPGLMGIKGDQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGLPGDASEKGQKGEPGPS 1072
Query: 241 SAPDLPGPSSAPDLPGPSSAPDL 263
GP+ P PG P L
Sbjct: 1073 GLRGDTGPAGTPGWPGEKGLPGL 1095
Score = 35.4 bits (80), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 104/308 (33%), Gaps = 31/308 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPD 82
EP PG P G AP GP G + AP GP+ P + G A
Sbjct: 942 EPGSPGLVGMPGNKGDRGAPGNDGPKG---FAGVTGAPGKRGPAGIPGVSGAKGDKGATG 998
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
L G GP AP L G L PG +PG PG P LPG
Sbjct: 999 LTGNDGPVGGRGPPGAPGLMGIKGDQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGLPG 1058
Query: 140 PSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDL--------PGPSSAPDLPGPSSA 188
+S PGPS GP+ P PG P L PG G
Sbjct: 1059 DASEKGQKGEPGPSGLRGDTGPAGTPGWPGEKGLPGLAVHGRAGPPGEKGDQGRSGIDGR 1118
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL------PGPSSAPDLPGPSSA 242
+ G L G P G AP +PG AP + G A PG
Sbjct: 1119 DGINGEKGEQGLQGVWGQPGEKGSVGAPGIPG---APGMDGLPGAAGAPGAVGYPGDRGD 1175
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPG-PSSTVLGS 300
PG S P L G + L G + AP G PG P++ PD+ G S
Sbjct: 1176 KGEPGLSGLPGLKGETGPVGLQGFTGAPGPKGERGIRGQPGLPATVPDIRGDKGSQGERG 1235
Query: 301 YLGEAGHQ 308
Y GE G Q
Sbjct: 1236 YTGEKGEQ 1243
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 89/301 (29%), Gaps = 41/301 (13%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PGP P L G GP+ PG + PG LPG S P + G
Sbjct: 853 PGPMGPPGLNGLQGEKGDRGPTGPIGFPGADGSVGYPGDRGDAGLPGVSGRPGIVGEKGD 912
Query: 90 PDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
GP+ P +PG G P PG P G AP GP
Sbjct: 913 VGPIGPAGVAGPPGVPGIDGVRGRDGAKGEPGSPGLVGMPGNKGDRGAPGNDGPKG---F 969
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAP------------------------DLPGPSSAPDL 182
G + AP GP+ P + G + G
Sbjct: 970 AGVTGAPGKRGPAGIPGVSGAKGDKGATGLTGNDGPVGGRGPPGAPGLMGIKGDQGLAGA 1029
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGP 239
PG +PG PG P LPG +S PGPS GP+ P PG
Sbjct: 1030 PGQQGLDGMPGEKGNQGFPGLDGPPGLPGDASEKGQKGEPGPSGLRGDTGPAGTPGWPGE 1089
Query: 240 SSAPDL--------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
P L PG G + G L G P G AP +P
Sbjct: 1090 KGLPGLAVHGRAGPPGEKGDQGRSGIDGRDGINGEKGEQGLQGVWGQPGEKGSVGAPGIP 1149
Query: 292 G 292
G
Sbjct: 1150 G 1150
Score = 32.7 bits (73), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPS 69
A +P + E+ LPGP L G P + GPS PGP G
Sbjct: 78 AGCVPKCIAEKG-NRGLPGPLGPTGLKGEMGFPGMEGPSGDKGQKGDPGPYGQRGDKGER 136
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 117
+P L G + P + GP+ P PG + G P L G S P
Sbjct: 137 GSPGLHGQAGVPGVQGPAGNPGAPGINGKDGCDGQDGIPGLEGLSGMP 184
Score = 32.7 bits (73), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 83/275 (30%), Gaps = 32/275 (11%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPG 85
PG + PG LPG S P + G GP+ P +PG G
Sbjct: 879 FPGADGSVGYPGDRGDAGLPGVSGRPGIVGEKGDVGPIGPAGVAGPPGVPGIDGVRGRDG 938
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSS 142
P PG P G AP GP G + AP GP+ P + G
Sbjct: 939 AKGEPGSPGLVGMPGNKGDRGAPGNDGPKG---FAGVTGAPGKRGPAGIPGVSGAKGDKG 995
Query: 143 APDLPGPSSAP------------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
A L G + G PG +PG PG P
Sbjct: 996 ATGLTGNDGPVGGRGPPGAPGLMGIKGDQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPG 1055
Query: 191 LPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDL--------PGPSSAPDLPGP 239
LPG +S PGPS GP+ P PG P L PG G
Sbjct: 1056 LPGDASEKGQKGEPGPSGLRGDTGPAGTPGWPGEKGLPGLAVHGRAGPPGEKGDQGRSGI 1115
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
+ G L G P G AP +PG
Sbjct: 1116 DGRDGINGEKGEQGLQGVWGQPGEKGSVGAPGIPG 1150
>sp|P02467|CO1A2_CHICK Collagen alpha-2(I) chain (Fragments) OS=Gallus gallus GN=COL1A2
PE=1 SV=2
Length = 1362
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 209 LPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 263
LPG LPG + A PGP S P GPS PGP+ AP G P
Sbjct: 873 LPGSRGERGLPGIAGATGEPGPLGVSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDG 932
Query: 264 -PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
PG AP G AP PGPS A PGP V
Sbjct: 933 PPGRDGAPGFKGERGAPGNPGPSGALGAPGPHGQV 967
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
LPG LPG + A PGP S P GPS PGP+ AP G P G
Sbjct: 873 LPGSRGERGLPGIAGATGEPGPLGVSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDG 932
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
P PG AP G AP PGPS A PGP
Sbjct: 933 P------PGRDGAPGFKGERGAPGNPGPSGALGAPGPHG 965
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 94
LPG LPG + A PGP S P GPS PGP+ AP G P G
Sbjct: 873 LPGSRGERGLPGIAGATGEPGPLGVSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDG 932
Query: 95 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
P PG AP G AP PGPS A PGP
Sbjct: 933 P------PGRDGAPGFKGERGAPGNPGPSGALGAPGPHG 965
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 121
LPG LPG + A PGP S P GPS PGP+ AP G P G
Sbjct: 873 LPGSRGERGLPGIAGATGEPGPLGVSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDG 932
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
P PG AP G AP PGPS A PGP
Sbjct: 933 P------PGRDGAPGFKGERGAPGNPGPSGALGAPGPHG 965
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
LPG LPG + A PGP S P GPS PGP+ AP G P G
Sbjct: 873 LPGSRGERGLPGIAGATGEPGPLGVSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDG 932
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
P PG AP G AP PGPS A PGP
Sbjct: 933 P------PGRDGAPGFKGERGAPGNPGPSGALGAPGPHG 965
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 128 LPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
LPG LPG + A PGP S P GPS PGP+ AP G P G
Sbjct: 873 LPGSRGERGLPGIAGATGEPGPLGVSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDG 932
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 223
P PG AP G AP PGPS A PGP
Sbjct: 933 P------PGRDGAPGFKGERGAPGNPGPSGALGAPGPHG 965
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 137 LPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
LPG LPG + A PGP S P GPS PGP+ AP G P G
Sbjct: 873 LPGSRGERGLPGIAGATGEPGPLGVSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDG 932
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
P PG AP G AP PGPS A PGP
Sbjct: 933 P------PGRDGAPGFKGERGAPGNPGPSGALGAPGPHG 965
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 173 LPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
LPG LPG + A PGP S P GPS PGP+ AP G P G
Sbjct: 873 LPGSRGERGLPGIAGATGEPGPLGVSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDG 932
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
P PG AP G AP PGPS A PGP
Sbjct: 933 P------PGRDGAPGFKGERGAPGNPGPSGALGAPGPHG 965
>sp|P08123|CO1A2_HUMAN Collagen alpha-2(I) chain OS=Homo sapiens GN=COL1A2 PE=1 SV=7
Length = 1366
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 77/222 (34%), Gaps = 29/222 (13%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 97
GP+ P PG + GP+ P G P PG + GP A PG
Sbjct: 113 FQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPG 172
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
P G L G P PG P PG + PG + A LPG PG
Sbjct: 173 LPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG---TPGQTGARGLPGERGRVGAPG 229
Query: 158 PSSAPDLPGPSSAPDLP-GP-----------------------SSAPDLP-GPSSAPDLP 192
P+ A G S P P GP ++ P P GP LP
Sbjct: 230 PAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLP 288
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
G S PG A L G A LPG + AP LPGP P
Sbjct: 289 GLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIP 330
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 77/222 (34%), Gaps = 29/222 (13%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
GP+ P PG + GP+ P G P PG + GP A PG
Sbjct: 113 FQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPG 172
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
P G L G P PG P PG + PG + A LPG PG
Sbjct: 173 LPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG---TPGQTGARGLPGERGRVGAPG 229
Query: 176 PSSAPDLPGPSSAPDLP-GP-----------------------SSAPDLP-GPSSAPDLP 210
P+ A G S P P GP ++ P P GP LP
Sbjct: 230 PAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLP 288
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
G S PG A L G A LPG + AP LPGP P
Sbjct: 289 GLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIP 330
Score = 36.6 bits (83), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 77/218 (35%), Gaps = 32/218 (14%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P EP GP+ A GP+ P G P PG + GP A PG P
Sbjct: 120 PGEPGQTGPAGA---RGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGF 176
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G L G P PG P PG + PG + A LPG PGP+ A
Sbjct: 177 KGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG---TPGQTGARGLPGERGRVGAPGPAGA 233
Query: 144 PDLPGPSSAPDLP-GP-----------------------SSAPDLP-GPSSAPDLPGPSS 178
G S P P GP ++ P P GP LPG S
Sbjct: 234 RGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSG 292
Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
PG A L G A LPG + AP LPGP P
Sbjct: 293 PVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIP 330
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 65/183 (35%), Gaps = 29/183 (15%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E + GP A PG P G L G P PG P PG +
Sbjct: 152 RPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG--- 208
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GP------------------- 122
PG + A LPG PGP+ A G S P P GP
Sbjct: 209 TPGQTGARGLPGERGRVGAPGPAGARGSDG-SVGPVGPAGPIGSAGPPGFPGAPGPKGEI 267
Query: 123 ----SSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 177
++ P P GP LPG S PG A L G A LPG + AP LPGP
Sbjct: 268 GAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPR 327
Query: 178 SAP 180
P
Sbjct: 328 GIP 330
>sp|P08121|CO3A1_MOUSE Collagen alpha-1(III) chain OS=Mus musculus GN=Col3a1 PE=2 SV=4
Length = 1464
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 99/282 (35%), Gaps = 39/282 (13%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E LPGP P + GP+ P PG G + G + AP L G +
Sbjct: 237 RPGERGLPGP---PGIKGPAGMPGFPGMKGHRGFDGRNGE---KGETGAPGLKGENG--- 287
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS------------------- 123
LPG + AP GP A PG P LPG + A G
Sbjct: 288 LPGDNGAPGPMGPRGA---PGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPG 344
Query: 124 --SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
A GP+ +P G PGP GP P G GP+ P
Sbjct: 345 SPGAKGEVGPAGSPGSNGSPGQRGEPGPQGHAGAQGPPGPPGNNGSPGGKGEMGPAGIPG 404
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
PG A PGP+ +PG PG + A PG A G + +P +PGP
Sbjct: 405 APGLIGARGPPGPAGTNGIPGTRGPSGEPGKNGAKGEPG---ARGERGEAGSPGIPGPKG 461
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
G +P PG + P G GP+ +PG
Sbjct: 462 E---DGKDGSPGEPGANGLPGAAGERGPSGFRGPAGPNGIPG 500
>sp|Q5QNQ9|CORA1_MOUSE Collagen alpha-1(XXVII) chain OS=Mus musculus GN=Col27a1 PE=2 SV=1
Length = 1845
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 80/251 (31%), Gaps = 27/251 (10%)
Query: 24 PLEPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
P +P PG L PG P PGP P GP + GP P GPS
Sbjct: 1345 PGDPGYPGQEGVQGLRGEPGQQGQPGHPGPRGRP---GPKGSKGEEGPKGKPGKAGPSGR 1401
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
G LPGP GP G + + +PG P G PGP
Sbjct: 1402 ---RGTQGLQGLPGPRGVVGRQGPE------GTAGSDGIPGRDGRPGYQGDQGNDGDPGP 1452
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
G LPG P G S P GP G + P G +
Sbjct: 1453 VGPAGRRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGGTGLPGNQGEPGSKGQ 1512
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGP 257
PG S PG + GP PG + GP P L G P + GP
Sbjct: 1513 PGDSGEMGFPGVAGLFGPKGP------PGDIGFKGIQGPRGPPGLMGKEGIIGPPGMLGP 1566
Query: 258 SSAPDLPGPSS 268
S LPGP
Sbjct: 1567 SG---LPGPKG 1574
Score = 35.4 bits (80), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 76/236 (32%), Gaps = 21/236 (8%)
Query: 72 PDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 128
P PG L PG P PGP P GP + GP P GPS
Sbjct: 1348 PGYPGQEGVQGLRGEPGQQGQPGHPGPRGRP---GPKGSKGEEGPKGKPGKAGPSGRR-- 1402
Query: 129 PGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
G LPGP GP + + +PG P G PGP G
Sbjct: 1403 -GTQGLQGLPGPRGVVGRQGPEGTAGSDGIPGRDGRPGYQGDQGNDGDPGPVGPAGRRGN 1461
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
LPG P G S P GP G + P G + PG S
Sbjct: 1462 PGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGGTGLPGNQGEPGSKGQPGDSGEMGF 1521
Query: 246 PGPSS--APDL-PGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSS 295
PG + P PG + GP P L G P + GPS LPGP
Sbjct: 1522 PGVAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIIGPPGMLGPSG---LPGPKG 1574
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 63/195 (32%), Gaps = 11/195 (5%)
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSS 142
P A D G LPG S P G PG + P PGP +P G
Sbjct: 667 PGQAHD--GAKGNMGLPGLSGNPGPLGRKGHKGHPGAAGHPGEQGQPGPEGSPGAKGYPG 724
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
PGP P G LPG P G P +PG PG P G
Sbjct: 725 RQGFPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGEMGRPG---FPGDFG 781
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSS 259
P L G LPGP L G + A PGP L G P L G
Sbjct: 782 ERGPPGLDGNPGEIGLPGPPGVLGLIGDTGALGPVGYPGPKGMKGLMGGVGEPGLKGDKG 841
Query: 260 APDLPGPSSAPDLPG 274
+PG S P G
Sbjct: 842 EQGVPGVSGDPGFQG 856
>sp|Q6P4Z2|CO2A1_XENTR Collagen alpha-1(II) chain OS=Xenopus tropicalis GN=col2a1 PE=2
SV=1
Length = 1492
Score = 36.6 bits (83), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 88/263 (33%), Gaps = 27/263 (10%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG AP G L GP AP G P L GP A PG P LPG
Sbjct: 511 PGERGAPGNRGFPGQDGLAGPKGAP---GERGVPGLGGPKGANGDPGRPGEPGLPGARGL 567
Query: 90 PDLPGPSSAPDLPGPSSAPD---------------------LPGPSSAPDLPGPSSAPDL 128
PG + GPS A PGP A PG + L
Sbjct: 568 TGRPGDAGPQGKVGPSGASGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGL 627
Query: 129 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
G LPG GP+ G PGPS LPGP +P G
Sbjct: 628 LGAPGLRGLPGKDGETGAQGPNGPAGPAGERGEQGPPGPSGFQGLPGPPGSPGEGGKPGD 687
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGP--SSAPD-LPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
+PG + AP L GP PG SS P L GP P PG GPS
Sbjct: 688 QGVPGEAGAPGLVGPRGERGFPGERGSSGPQGLQGPRGLPGTPGTDGPKGATGPSGPNGA 747
Query: 246 PGPSSAPDLPGPSSAPDLPGPSS 268
GP +PG A + GP
Sbjct: 748 QGPPGLQGMPGERGAAGISGPKG 770
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 97/275 (35%), Gaps = 14/275 (5%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
PL P PG AP G L GP A PG P L GP A PG P L
Sbjct: 507 PLGP--PGERGAPGNRGFPGQDGLAGPKGA---PGERGVPGLGGPKGANGDPGRPGEPGL 561
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
PG PG + GPS A G P G P + G PGP A
Sbjct: 562 PGARGLTGRPGDAGPQGKVGPSGASGEDGRPGPPGPQGARGQPGVMG------FPGPKGA 615
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
PG + L G LPG GP+ G PGPS LPGP
Sbjct: 616 NGEPGKAGEKGLLGAPGLRGLPGKDGETGAQGPNGPAGPAGERGEQGPPGPSGFQGLPGP 675
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--SSAPD-LPGPSSAPDLPGPSSA 260
+P G +PG + AP L GP PG SS P L GP P PG
Sbjct: 676 PGSPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSSGPQGLQGPRGLPGTPGTDGP 735
Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
GPS GP +PG A + GP
Sbjct: 736 KGATGPSGPNGAQGPPGLQGMPGERGAAGISGPKG 770
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 82/222 (36%), Gaps = 9/222 (4%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGP--SSAPD-LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+PG + AP L GP PG SS P L GP P PG GPS G
Sbjct: 690 VPGEAGAPGLVGPRGERGFPGERGSSGPQGLQGPRGLPGTPGTDGPKGATGPSGPNGAQG 749
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P +PG A + GP G PG + L GP P GP+
Sbjct: 750 PPGLQGMPGERGAAGISGPKGDRGDTGEKGPEGAPGKDGSRGLTGPIGPPGPSGPNGEKG 809
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
GPS + G AP G + P PGP+ PG L G G +
Sbjct: 810 ESGPSGPAGIVGARGAPGDRG-ETGP--PGPAGFAGPPGADGQAGLKGDQGESGQKGDAG 866
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
AP GPS AP GP+ + GP A GP A PG
Sbjct: 867 APGPQGPSGAPGPQGPTG---VNGPKGARGAQGPPGATGFPG 905
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 82/222 (36%), Gaps = 9/222 (4%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGP--SSAPD-LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 121
+PG + AP L GP PG SS P L GP P PG GPS G
Sbjct: 690 VPGEAGAPGLVGPRGERGFPGERGSSGPQGLQGPRGLPGTPGTDGPKGATGPSGPNGAQG 749
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
P +PG A + GP G PG + L GP P GP+
Sbjct: 750 PPGLQGMPGERGAAGISGPKGDRGDTGEKGPEGAPGKDGSRGLTGPIGPPGPSGPNGEKG 809
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
GPS + G AP G + P PGP+ PG L G G +
Sbjct: 810 ESGPSGPAGIVGARGAPGDRG-ETGP--PGPAGFAGPPGADGQAGLKGDQGESGQKGDAG 866
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
AP GPS AP GP+ + GP A GP A PG
Sbjct: 867 APGPQGPSGAPGPQGPTG---VNGPKGARGAQGPPGATGFPG 905
Score = 32.3 bits (72), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 86/277 (31%), Gaps = 36/277 (12%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP--------------- 75
GP A G S P PGP+ A PG P G S AP +
Sbjct: 389 GPEGAQGPRGESGTPGSPGPAGASGNPGTDGIPGAKGSSGAPGIAGAPGFPGPRGPPGPQ 448
Query: 76 ------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
GP PG + GP GP A PGP+ G P
Sbjct: 449 GATGPLGPKGQTGDPGVAGFKGEHGPKGEIGSAGPQGA---PGPAGEEGKRGARGEPGAA 505
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
GP P G PG L GP A PG P L GP A PG P
Sbjct: 506 GPLGPPGERGAPGNRGFPGQDG---LAGPKGA---PGERGVPGLGGPKGANGDPGRPGEP 559
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
LPG PG + GPS A G P G P + G PGP
Sbjct: 560 GLPGARGLTGRPGDAGPQGKVGPSGASGEDGRPGPPGPQGARGQPGVMG------FPGPK 613
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
A PG + L G LPG GP+
Sbjct: 614 GANGEPGKAGEKGLLGAPGLRGLPGKDGETGAQGPNG 650
>sp|P02453|CO1A1_BOVIN Collagen alpha-1(I) chain OS=Bos taurus GN=COL1A1 PE=1 SV=3
Length = 1463
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E PGP A LPG + P + G L G GP P PG + AP
Sbjct: 239 RPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPG 298
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSA 107
GP LPG P PGP+ A
Sbjct: 299 QMGPRG---LPGERGRPGAPGPAGA 320
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 174 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 233
PGP A LPG + P + G L G GP P PG + AP GP
Sbjct: 246 PGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRG- 304
Query: 234 PDLPGPSSAPDLPGPSSA 251
LPG P PGP+ A
Sbjct: 305 --LPGERGRPGAPGPAGA 320
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
PGP A LPG + P + G L G GP P PG + AP GP
Sbjct: 246 PGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRG- 304
Query: 243 PDLPGPSSAPDLPGPSSA 260
LPG P PGP+ A
Sbjct: 305 --LPGERGRPGAPGPAGA 320
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 24/57 (42%)
Query: 51 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 107
AP GP+ AP PGP G P G P LPGPS P GPS A
Sbjct: 933 KGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGA 989
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 24/57 (42%)
Query: 78 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
AP GP+ AP PGP G P G P LPGPS P GPS A
Sbjct: 933 KGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGA 989
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 24/57 (42%)
Query: 105 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
AP GP+ AP PGP G P G P LPGPS P GPS A
Sbjct: 933 KGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGA 989
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 24/57 (42%)
Query: 159 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 215
AP GP+ AP PGP G P G P LPGPS P GPS A
Sbjct: 933 KGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGA 989
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 24/57 (42%)
Query: 168 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
AP GP+ AP PGP G P G P LPGPS P GPS A
Sbjct: 933 KGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGA 989
Score = 32.0 bits (71), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
G + P PG P PGP A LPG + P + G L G GP P
Sbjct: 232 GEAGKPGRPG-ERGP--PGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEP 288
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 233
PG + AP GP LPG P PGP+ A
Sbjct: 289 GSPGENGAPGQMGPRG---LPGERGRPGAPGPAGA 320
>sp|A0MSJ1|CRA1B_DANRE Collagen alpha-1(XXVII) chain B OS=Danio rerio GN=col27a1b PE=2
SV=1
Length = 1658
Score = 35.8 bits (81), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 87/296 (29%), Gaps = 45/296 (15%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
P +P PG PGPS P + GP +P G LPGP G
Sbjct: 498 PGQPGQPGRKGQKGHPGPSGHPGDQGIRGPDGSPGAKGYPGRQGLPGPIGNMGPKGVRGF 557
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG---------------PSSAPDLPGPSSA 125
+PG P G P +PG PG PGP
Sbjct: 558 IGIPGIFGLPGADGERGLPGVPGKKGKMGRPGFPGDFGERGPPGPDGNPGEIGAPGPVGI 617
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
P G + GP P L GP P PG P L G LPG P G
Sbjct: 618 PGFIGDMGPVGMVGP---PGLIGPKGVPGNPG---EPGLKGDKGELGLPGEPGEPGFQGD 671
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
PG PGP GP P GP P GP + GP +
Sbjct: 672 KGIQGSPGLPGVQGKPGPQGKIGDRGPDGLPGPLGPEGFPGDIGPPGQNGVEGPKGNAGV 731
Query: 246 P------------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
GP+ AP L G P G S P G P + G
Sbjct: 732 RGIPGPGGLPGLEGDQGPVGPAGAPGLEG---RPGRKGISGNPGEEGMKGEPGMTG 784
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 76/246 (30%), Gaps = 12/246 (4%)
Query: 54 PDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 110
P L G P PG PGPS P + GP +P G LPGP
Sbjct: 492 PGLVGLPGQPGQPGRKGQKGHPGPSGHPGDQGIRGPDGSPGAKGYPGRQGLPGPIGNMGP 551
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
G +PG P G P +PG PG P G P G
Sbjct: 552 KGVRGFIGIPGIFGLPGADGERGLPGVPGKKGKMGRPG---FPGDFGERGPPGPDGNPGE 608
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
PGP P G + GP P L GP P PG P L G LPG
Sbjct: 609 IGAPGPVGIPGFIGDMGPVGMVGP---PGLIGPKGVPGNPG---EPGLKGDKGELGLPGE 662
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
P G PG PGP GP P GP P GP +
Sbjct: 663 PGEPGFQGDKGIQGSPGLPGVQGKPGPQGKIGDRGPDGLPGPLGPEGFPGDIGPPGQNGV 722
Query: 291 PGPSST 296
GP
Sbjct: 723 EGPKGN 728
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 90/292 (30%), Gaps = 21/292 (7%)
Query: 12 EADYLPSTVTE-RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 70
E + TE R +P L G PG PG + G G
Sbjct: 1016 EKGVIGFKGTEGRTGDPGLIGVKGPEGKPGKIGERGKPGEKGSKGHQGQLGEMGALGEQG 1075
Query: 71 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
GP + G AP G P L G GP + PGP G
Sbjct: 1076 DTGFIGPKGSRGTTGFMGAPGKMGQQGEPGLVGYEGH---QGPQGSLGSPGPKGEKGEQG 1132
Query: 131 PSSAPDL-PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
+ PGPS D+ GP G P PG G AP +PG S
Sbjct: 1133 DDGKVEGPPGPSG--DI-GPVGNRGDRGEPGDPGYPGLEGVQGERGKEGAPGVPGNSGPR 1189
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
PGP + GP G S PGP +PGP G P L G +
Sbjct: 1190 GFPGPKGSKGNKGPKGKNSPRGESGNRGSPGPVG---VPGPRGVIGREGFEGEPGLDGAA 1246
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSY 301
G G P PGP G + AP LPG V GS+
Sbjct: 1247 GKDGAKGMPGDLGRDGDVGLPGKPGPQ------GNAGAPGLPG----VQGSF 1288
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 57/182 (31%), Gaps = 6/182 (3%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +P PG G AP +PG S PGP + GP G S
Sbjct: 1159 PGDPGYPGLEGVQGERGKEGAPGVPGNSGPRGFPGPKGSKGNKGPKGKNSPRGESGNRGS 1218
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP--- 140
PGP +PGP G P L G + G G P PGP
Sbjct: 1219 PGPVG---VPGPRGVIGREGFEGEPGLDGAAGKDGAKGMPGDLGRDGDVGLPGKPGPQGN 1275
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ AP LPG + G GP L G P G PG +
Sbjct: 1276 AGAPGLPGVQGSFGPKGERGITGHSGPPGKRGLNGGMGFPGKQGDQGFKGQPGDAGEQGF 1335
Query: 201 PG 202
PG
Sbjct: 1336 PG 1337
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 56/185 (30%), Gaps = 9/185 (4%)
Query: 63 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 122
P PG G AP +PG S PGP + GP G S PGP
Sbjct: 1162 PGYPGLEGVQGERGKEGAPGVPGNSGPRGFPGPKGSKGNKGPKGKNSPRGESGNRGSPGP 1221
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
+PGP G P L G + G G P PGP
Sbjct: 1222 VG---VPGPRGVIGREGFEGEPGLDGAAGKDGAKGMPGDLGRDGDVGLPGKPGPQ----- 1273
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
G + AP LPG + G GP L G P G PG +
Sbjct: 1274 -GNAGAPGLPGVQGSFGPKGERGITGHSGPPGKRGLNGGMGFPGKQGDQGFKGQPGDAGE 1332
Query: 243 PDLPG 247
PG
Sbjct: 1333 QGFPG 1337
Score = 32.7 bits (73), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 64/208 (30%), Gaps = 15/208 (7%)
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDL 155
P L G P PG PGPS P + GP +P G LPGP
Sbjct: 492 PGLVGLPGQPGQPGRKGQKGHPGPSGHPGDQGIRGPDGSPGAKGYPGRQGLPGPIGNMGP 551
Query: 156 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP------GPSSAPDLPGPSSAPDL 209
G +PG P G P +PG P G P G
Sbjct: 552 KGVRGFIGIPGIFGLPGADGERGLPGVPGKKGKMGRPGFPGDFGERGPPGPDGNPGEIGA 611
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
PGP P G + GP P L GP P PG P L G LPG
Sbjct: 612 PGPVGIPGFIGDMGPVGMVGP---PGLIGPKGVPGNPG---EPGLKGDKGELGLPGEPGE 665
Query: 270 PDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
P G PG PGP +
Sbjct: 666 PGFQGDKGIQGSPGLPGVQGKPGPQGKI 693
Score = 32.7 bits (73), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 84/273 (30%), Gaps = 32/273 (11%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P L GP P PG P L G LPG P G PG PGP
Sbjct: 633 PGLIGPKGVPGNPG---EPGLKGDKGELGLPGEPGEPGFQGDKGIQGSPGLPGVQGKPGP 689
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----------------- 129
GP P GP P GP + GP +
Sbjct: 690 QGKIGDRGPDGLPGPLGPEGFPGDIGPPGQNGVEGPKGNAGVRGIPGPGGLPGLEGDQGP 749
Query: 130 -GPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
GP+ AP L PG PG PG + P + G GP L G
Sbjct: 750 VGPAGAPGLEGRPGRKGISGNPGEEGMKGEPGMTGNPGMLGERGPVGFVGPFGEMGLAGE 809
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
G + P PG A PG L GP+ A PGP + L G + P
Sbjct: 810 KGD---RGETGQPGPPGEKGAMGHPGAPGERGLSGPAGA---PGPHGSRGLSG-TRGPKG 862
Query: 246 PGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSS 277
+ PD P G + GP P G S
Sbjct: 863 TRGARGPDGPVGEKGMMGMKGPEGPPGKQGLSG 895
>sp|Q9YIB4|CO1A1_CYNPY Collagen alpha-1(I) chain OS=Cynops pyrrhogaster GN=COL1A1 PE=2
SV=1
Length = 1450
Score = 35.8 bits (81), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 81/234 (34%), Gaps = 33/234 (14%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
RP E GP A LPG + P + G L G GP P PG + AP
Sbjct: 226 RPGERGPSGPQGARGLPGTAGLPGMKGHRGFNGLDGAKGDNGPAGPKGEPGNPGENGAPG 285
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPD---------------------LPGPSSAPDLPG 121
GP LPG P PGP+ A PG A G
Sbjct: 286 QAGPRG---LPGERGRPGAPGPAGARGNDGSPGAAGPPGPTGPTGPPGFPGAVGAKGDAG 342
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSS 178
P + GP A PG GPS P PG A PG + AP PG
Sbjct: 343 PQGSRGSEGPQGARGEPGAPGPAGAAGPSGNPGTDGQPGGKGATGSPGIAGAPGFPGARG 402
Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
AP GP+ A PGP PG PG A PGP+ PGPS
Sbjct: 403 APGPQGPAGA---PGPKGNNGEPGAQGNKGEPG---AKGEPGPAGVQGPPGPSG 450
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 77/202 (38%), Gaps = 3/202 (1%)
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
GP+ A PG P PGP+ + GP A PG GP PGP+
Sbjct: 777 GPTGARGSPGERGEPGAPGPAG---ICGPPGADGQPGAKGESGDAGPKGDAGAPGPAGPT 833
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
PGP+ PGP GP A PG + PGPS PGP G
Sbjct: 834 GAPGPAGNVGAPGPKGTRGAAGPPGATGFPGAAGRLGPPGPSGNAGPPGPPGPGGKEGAK 893
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
+ GP+ PGP+ P G +P GP+ AP +PGP G P
Sbjct: 894 GSRGETGPAGRSGEPGPAGPPGPSGEKGSPGSDGPAGAPGIPGPQGIAGQRGVVGLPGQR 953
Query: 247 GPSSAPDLPGPSSAPDLPGPSS 268
G LPGP+ P GPS
Sbjct: 954 GERGFSGLPGPAGEPGKQGPSG 975
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 78/226 (34%), Gaps = 33/226 (14%)
Query: 49 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 108
GP A LPG + P + G L G GP P PG + AP GP
Sbjct: 234 GPQGARGLPGTAGLPGMKGHRGFNGLDGAKGDNGPAGPKGEPGNPGENGAPGQAGPRG-- 291
Query: 109 DLPGPSSAPDLPGPSSAPD---------------------LPGPSSAPDLPGPSSAPDLP 147
LPG P PGP+ A PG A GP +
Sbjct: 292 -LPGERGRPGAPGPAGARGNDGSPGAAGPPGPTGPTGPPGFPGAVGAKGDAGPQGSRGSE 350
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
GP A PG GPS P PG A PG + AP PG AP GP+
Sbjct: 351 GPQGARGEPGAPGPAGAAGPSGNPGTDGQPGGKGATGSPGIAGAPGFPGARGAPGPQGPA 410
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
A PGP PG PG A PGP+ PGPS
Sbjct: 411 GA---PGPKGNNGEPGAQGNKGEPG---AKGEPGPAGVQGPPGPSG 450
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 78/226 (34%), Gaps = 33/226 (14%)
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
GP A LPG + P + G L G GP P PG + AP GP
Sbjct: 234 GPQGARGLPGTAGLPGMKGHRGFNGLDGAKGDNGPAGPKGEPGNPGENGAPGQAGPRG-- 291
Query: 145 DLPGPSSAPDLPGPSSAPD---------------------LPGPSSAPDLPGPSSAPDLP 183
LPG P PGP+ A PG A GP +
Sbjct: 292 -LPGERGRPGAPGPAGARGNDGSPGAAGPPGPTGPTGPPGFPGAVGAKGDAGPQGSRGSE 350
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
GP A PG GPS P PG A PG + AP PG AP GP+
Sbjct: 351 GPQGARGEPGAPGPAGAAGPSGNPGTDGQPGGKGATGSPGIAGAPGFPGARGAPGPQGPA 410
Query: 241 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
A PGP PG PG A PGP+ PGPS
Sbjct: 411 GA---PGPKGNNGEPGAQGNKGEPG---AKGEPGPAGVQGPPGPSG 450
Score = 33.1 bits (74), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 91/273 (33%), Gaps = 33/273 (12%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
GPS P PG + A G P G PG GP A LPG +
Sbjct: 187 FQGPSGEPGEPGAAGALGPRGLPGPPGKNGDDGESGKPGRPGERGPSGPQGARGLPGTAG 246
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
P + G L G GP P PG + AP GP LPG P PG
Sbjct: 247 LPGMKGHRGFNGLDGAKGDNGPAGPKGEPGNPGENGAPGQAGPRG---LPGERGRPGAPG 303
Query: 167 PSSAPD---------------------LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
P+ A PG A GP + GP A PG
Sbjct: 304 PAGARGNDGSPGAAGPPGPTGPTGPPGFPGAVGAKGDAGPQGSRGSEGPQGARGEPGAPG 363
Query: 206 APDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
GPS P PG A PG + AP PG AP GP+ A PGP
Sbjct: 364 PAGAAGPSGNPGTDGQPGGKGATGSPGIAGAPGFPGARGAPGPQGPAGA---PGPKGNNG 420
Query: 263 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 295
PG PG A PGP+ PGPS
Sbjct: 421 EPGAQGNKGEPG---AKGEPGPAGVQGPPGPSG 450
Score = 32.3 bits (72), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 79/208 (37%), Gaps = 5/208 (2%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
S P GP+ A PG P PGP+ + GP A PG GP P
Sbjct: 773 SGP--AGPTGARGSPGERGEPGAPGPAG---ICGPPGADGQPGAKGESGDAGPKGDAGAP 827
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
GP+ PGP+ PGP GP A PG + PGPS PGP
Sbjct: 828 GPAGPTGAPGPAGNVGAPGPKGTRGAAGPPGATGFPGAAGRLGPPGPSGNAGPPGPPGPG 887
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 222
G + GP+ PGP+ P G +P GP+ AP +PGP G
Sbjct: 888 GKEGAKGSRGETGPAGRSGEPGPAGPPGPSGEKGSPGSDGPAGAPGIPGPQGIAGQRGVV 947
Query: 223 SAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
P G LPGP+ P GPS
Sbjct: 948 GLPGQRGERGFSGLPGPAGEPGKQGPSG 975
>sp|Q91717|CO2A1_XENLA Collagen alpha-1(II) chain OS=Xenopus laevis GN=col2a1 PE=2 SV=2
Length = 1486
Score = 35.4 bits (80), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 83/222 (37%), Gaps = 9/222 (4%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGP--SSAPD-LPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
+PG + AP L GP PG SS P L GP P PG GPS G
Sbjct: 687 VPGEAGAPGLVGPRGERGFPGERGSSGPQGLQGPRGLPGTPGTDGPKGASGPSGPNGAQG 746
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P +PG A + GP G G + L GP P GP+
Sbjct: 747 PPGLQGMPGERGAAGISGPKGDRGDTGEKGPEGASGKDGSRGLTGPIGPPGPAGPNGEKG 806
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
GPS P + G AP G + P PGP+ PG L G G +
Sbjct: 807 ESGPSGPPGIVGARGAPGDRG-ENGP--PGPAGFAGPPGADGQSGLKGDQGESGQKGDAG 863
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
AP GPS AP GP+ + GP A GP+ A PG
Sbjct: 864 APGPQGPSGAPGPQGPTG---VFGPKGARGAQGPAGATGFPG 902
>sp|P05539|CO2A1_RAT Collagen alpha-1(II) chain OS=Rattus norvegicus GN=Col2a1 PE=1 SV=2
Length = 1419
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 74/202 (36%), Gaps = 9/202 (4%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
G + A PG PGP+ PG P G G + AP GPS AP
Sbjct: 745 GSTGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAP 804
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
GP+ + GP A GP A PG + PG + P GP GP
Sbjct: 805 GPQGPTG---VTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPAGPPGPAGKDGPK 861
Query: 151 SAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
A PG + P L GP+ AP G P GPS + PGP G P
Sbjct: 862 GARGDTGAPGRAGDPGLQGPAGAP---GEKGEPGDDGPSGSDGPPGPQGLAGQRGIVGLP 918
Query: 208 DLPGPSSAPDLPGPSSAPDLPG 229
G P LPGPS P G
Sbjct: 919 GQRGERGFPGLPGPSGEPGKQG 940
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 74/202 (36%), Gaps = 9/202 (4%)
Query: 49 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 108
G + A PG PGP+ PG P G G + AP GPS AP
Sbjct: 745 GSTGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAP 804
Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 168
GP+ + GP A GP A PG + PG + P GP GP
Sbjct: 805 GPQGPTG---VTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPAGPPGPAGKDGPK 861
Query: 169 SAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
A PG + P L GP+ AP G P GPS + PGP G P
Sbjct: 862 GARGDTGAPGRAGDPGLQGPAGAP---GEKGEPGDDGPSGSDGPPGPQGLAGQRGIVGLP 918
Query: 226 DLPGPSSAPDLPGPSSAPDLPG 247
G P LPGPS P G
Sbjct: 919 GQRGERGFPGLPGPSGEPGKQG 940
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 74/202 (36%), Gaps = 9/202 (4%)
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
G + A PG PGP+ PG P G G + AP GPS AP
Sbjct: 745 GSTGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAP 804
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
GP+ + GP A GP A PG + PG + P GP GP
Sbjct: 805 GPQGPTG---VTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPAGPPGPAGKDGPK 861
Query: 187 SAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
A PG + P L GP+ AP G P GPS + PGP G P
Sbjct: 862 GARGDTGAPGRAGDPGLQGPAGAP---GEKGEPGDDGPSGSDGPPGPQGLAGQRGIVGLP 918
Query: 244 DLPGPSSAPDLPGPSSAPDLPG 265
G P LPGPS P G
Sbjct: 919 GQRGERGFPGLPGPSGEPGKQG 940
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 74/202 (36%), Gaps = 9/202 (4%)
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G + A PG PGP+ PG P G G + AP GPS AP
Sbjct: 745 GSTGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAP 804
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
GP+ + GP A GP A PG + PG + P GP GP
Sbjct: 805 GPQGPTG---VTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPAGPPGPAGKDGPK 861
Query: 196 SAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
A PG + P L GP+ AP G P GPS + PGP G P
Sbjct: 862 GARGDTGAPGRAGDPGLQGPAGAP---GEKGEPGDDGPSGSDGPPGPQGLAGQRGIVGLP 918
Query: 253 DLPGPSSAPDLPGPSSAPDLPG 274
G P LPGPS P G
Sbjct: 919 GQRGERGFPGLPGPSGEPGKQG 940
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 69/185 (37%), Gaps = 9/185 (4%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PGP+ PG P G G + AP GPS AP GP+ + GP A
Sbjct: 762 PGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPGPQGPTG---VTGPKGA 818
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDL 146
GP A PG + PG + P GP GP A PG + P L
Sbjct: 819 RGAQGPPGATGFPGAAGRVGPPGSNGNPGPAGPPGPAGKDGPKGARGDTGAPGRAGDPGL 878
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
GP+ AP G P GPS + PGP G P G P LPGPS
Sbjct: 879 QGPAGAP---GEKGEPGDDGPSGSDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGE 935
Query: 207 PDLPG 211
P G
Sbjct: 936 PGKQG 940
Score = 32.7 bits (73), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 72/196 (36%), Gaps = 9/196 (4%)
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
G + A PG PGP+ PG P G G + AP GPS AP
Sbjct: 745 GSTGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAP 804
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 222
GP+ + GP A GP A PG + PG + P GP GP
Sbjct: 805 GPQGPTG---VTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPAGPPGPAGKDGPK 861
Query: 223 SAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 279
A PG + P L GP+ AP G P GPS + PGP G P
Sbjct: 862 GARGDTGAPGRAGDPGLQGPAGAP---GEKGEPGDDGPSGSDGPPGPQGLAGQRGIVGLP 918
Query: 280 DLPGPSSAPDLPGPSS 295
G P LPGPS
Sbjct: 919 GQRGERGFPGLPGPSG 934
>sp|P02459|CO2A1_BOVIN Collagen alpha-1(II) chain OS=Bos taurus GN=COL2A1 PE=1 SV=4
Length = 1487
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 77/209 (36%), Gaps = 6/209 (2%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P + L GP AP GPS L GP A PG P LPG PG +
Sbjct: 518 PGQDGLAGPKGAPGERGPSG---LAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK 574
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
GPS AP G P G P + PGP A PG + LPG LPG
Sbjct: 575 VGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGK 634
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
GP G PGPS LPGP P G +PG + AP L
Sbjct: 635 DGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGL 694
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
GP PG +P G A LPG
Sbjct: 695 VGPRGERGFPGERGSPGSQGLQGARGLPG 723
Score = 32.0 bits (71), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 74/207 (35%), Gaps = 12/207 (5%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
L GP AP GPS L GP A PG P LPG PG + GPS
Sbjct: 523 LAGPKGAPGERGPSG---LAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSG 579
Query: 116 APDLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
AP G A PG PGP A PG + LPG LPG
Sbjct: 580 APGEDGRPGPPGPQGARGQPGVMG---FPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDG 636
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
GP G PGPS LPGP P G +PG + AP L G
Sbjct: 637 ETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVG 696
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPG 256
P PG +P G A LPG
Sbjct: 697 PRGERGFPGERGSPGSQGLQGARGLPG 723
Score = 32.0 bits (71), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 74/207 (35%), Gaps = 12/207 (5%)
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
L GP AP GPS L GP A PG P LPG PG + GPS
Sbjct: 523 LAGPKGAPGERGPSG---LAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSG 579
Query: 152 APDLPGPSS------APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
AP G A PG PGP A PG + LPG LPG
Sbjct: 580 APGEDGRPGPPGPQGARGQPGVMG---FPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDG 636
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
GP G PGPS LPGP P G +PG + AP L G
Sbjct: 637 ETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVG 696
Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P PG +P G A LPG
Sbjct: 697 PRGERGFPGERGSPGSQGLQGARGLPG 723
>sp|Q02388|CO7A1_HUMAN Collagen alpha-1(VII) chain OS=Homo sapiens GN=COL7A1 PE=1 SV=2
Length = 2944
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 47/124 (37%), Gaps = 12/124 (9%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----- 81
P G + P PG A G +P +PG +P LPGP PGP+ AP
Sbjct: 2247 PGQVGETGKPGAPGRDGASGKDGDRGSPGVPG---SPGLPGPVGPKGEPGPTGAPGQAVV 2303
Query: 82 DLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
LPG PG A DL PG LPGP G + P PG P
Sbjct: 2304 GLPGAKGEKGAPG-GLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAP 2362
Query: 139 GPSS 142
GP
Sbjct: 2363 GPKG 2366
Score = 33.1 bits (74), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
L GP+ A LPGP L GP +P LP G + P PG A G +P +PG
Sbjct: 2219 LTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPG 2278
Query: 86 PSSAPDLPGPSSAPDLPGPSSAP-----DLPGPSSAPDLPGPSSAPDL---PGPSSAPDL 137
+P LPGP PGP+ AP LPG PG A DL PG L
Sbjct: 2279 ---SPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPG-GLAGDLVGEPGAKGDRGL 2334
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
PGP G + P PG PGP
Sbjct: 2335 PGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKG 2366
>sp|Q28668|CO1A2_RABIT Collagen alpha-2(I) chain (Fragment) OS=Oryctolagus cuniculus
GN=COL1A2 PE=2 SV=1
Length = 526
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 73/216 (33%), Gaps = 24/216 (11%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGP------------SSAPDLPGPSSAPDLPGPSSAPDLPG 112
LPG LPG + A PGP A PG + AP G P G
Sbjct: 35 LPGSRGERGLPGVAGALGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGSDG 94
Query: 113 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 172
P PG P G P GP A PGP + G PGP+ +
Sbjct: 95 P------PGRDGQPGHKGERGYPGNAGPVGAAGAPGPQGSVGPTGKHGNRGEPGPAGS-- 146
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
GP A GPS + G P GP P + G + LPG + G
Sbjct: 147 -IGPVGAAGPRGPSGPQGIRGDKGEPGDKGPRGLPGIKGHNGLQGLPGLAGQ---HGDQG 202
Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
AP GP+ GP+ G S P GP+
Sbjct: 203 APGAVGPAGPRGPAGPTGPAGKDGRSGHPGTVGPAG 238
>sp|Q9XSJ7|CO1A1_CANFA Collagen alpha-1(I) chain OS=Canis familiaris GN=COL1A1 PE=1 SV=1
Length = 1460
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
PGP A LPG + P + G L G GP P PG + AP GP
Sbjct: 243 PGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRG- 301
Query: 135 PDLPGPSSAPDLPGPSSA 152
LPG P PGP+ A
Sbjct: 302 --LPGERGRPGAPGPAGA 317
>sp|P02452|CO1A1_HUMAN Collagen alpha-1(I) chain OS=Homo sapiens GN=COL1A1 PE=1 SV=5
Length = 1464
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
PGP A LPG + P + G L G GP P PG + AP GP
Sbjct: 247 PGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRG- 305
Query: 144 PDLPGPSSAPDLPGPSSA 161
LPG P PGP+ A
Sbjct: 306 --LPGERGRPGAPGPAGA 321
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
PGP A LPG + P + G L G GP P PG + AP GP
Sbjct: 247 PGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRG- 305
Query: 153 PDLPGPSSAPDLPGPSSA 170
LPG P PGP+ A
Sbjct: 306 --LPGERGRPGAPGPAGA 321
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 236,416,784
Number of Sequences: 539616
Number of extensions: 15101350
Number of successful extensions: 313341
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 2203
Number of HSP's that attempted gapping in prelim test: 78397
Number of HSP's gapped (non-prelim): 50819
length of query: 448
length of database: 191,569,459
effective HSP length: 121
effective length of query: 327
effective length of database: 126,275,923
effective search space: 41292226821
effective search space used: 41292226821
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 63 (28.9 bits)