Query psy16323
Match_columns 448
No_of_seqs 398 out of 1522
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 18:27:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hqv_A Collagen alpha-1(I) cha 100.0 8.7E-27 3E-31 265.3 33.0 7 4-10 5-11 (1056)
2 3hqv_A Collagen alpha-1(I) cha 100.0 7.5E-27 2.6E-31 265.9 31.6 47 8-55 4-50 (1056)
3 1y0f_A Collagen I alpha 1; nat 100.0 1.7E-26 5.7E-31 261.8 31.7 8 3-10 4-11 (1054)
4 3hqv_B Collagen alpha-2(I) cha 100.0 3.9E-26 1.3E-30 259.5 33.4 50 20-69 7-56 (1028)
5 4ae2_A Procollagen III, collag 99.8 5.7E-22 1.9E-26 193.6 4.7 138 297-446 27-193 (256)
6 3zqk_A VON willebrand factor; 65.0 3.1 0.0001 37.3 2.4 46 316-361 19-70 (199)
7 1ijb_A VON willebrand factor; 61.2 4.1 0.00014 36.5 2.6 47 316-362 11-63 (202)
8 1mjn_A Integrin alpha-L; rossm 49.5 6.5 0.00022 34.5 1.8 45 318-363 2-51 (179)
9 4hqf_A Thrombospondin-related 48.1 9.5 0.00033 36.0 2.8 54 308-361 11-71 (281)
10 1v7p_C Integrin alpha-2; snake 44.3 8.7 0.0003 34.1 1.8 47 316-362 4-54 (200)
11 2xgg_A Microneme protein 2; A/ 44.1 11 0.00036 33.0 2.3 48 316-363 15-68 (178)
12 1mf7_A Integrin alpha M; cell 40.3 11 0.00039 33.0 1.9 47 316-363 3-54 (194)
13 4hqo_A Sporozoite surface prot 39.3 13 0.00043 35.0 2.1 48 315-362 15-69 (266)
14 1atz_A VON willebrand factor; 39.0 14 0.00046 32.4 2.2 46 317-362 4-55 (189)
15 1pt6_A Integrin alpha-1; cell 36.3 14 0.00047 33.1 1.8 46 317-362 6-55 (213)
16 1t60_A Type IV collagen; basem 34.5 11 0.00037 36.0 0.8 21 346-366 104-124 (229)
17 2b2x_A Integrin alpha-1; compu 34.1 13 0.00043 33.7 1.2 47 316-362 20-70 (223)
18 1q0p_A Complement factor B; VO 32.8 13 0.00043 33.1 0.9 48 315-362 12-65 (223)
19 1t60_C Type IV collagen; basem 26.4 18 0.00062 34.4 0.8 21 346-366 101-121 (227)
20 3n2n_F Anthrax toxin receptor 26.1 32 0.0011 29.5 2.3 45 316-361 5-53 (185)
21 3t3l_A Frataxin, mitochondrial 24.8 32 0.0011 29.8 2.1 66 354-422 58-124 (129)
22 1n3y_A Integrin alpha-X; alpha 24.4 34 0.0012 29.7 2.2 46 316-362 7-57 (198)
23 1o91_A Collagen alpha 1(VIII) 24.0 16 0.00056 33.0 0.0 36 336-371 83-122 (178)
24 1o91_A Collagen alpha 1(VIII) 22.8 18 0.00061 32.8 0.0 33 347-380 86-118 (178)
25 2odp_A Complement C2; C3/C5 co 22.7 25 0.00084 35.9 1.0 48 316-363 7-60 (509)
26 3hrz_D Complement factor B; se 20.5 26 0.0009 37.4 0.7 47 316-362 241-293 (741)
No 1
>3hqv_A Collagen alpha-1(I) chain; native, in SITU, molecular envelope, triple-helical, supermolecular, supramolecular, packing structure; 5.16A {Rattus norvegicus} PDB: 3hr2_A
Probab=99.96 E-value=8.7e-27 Score=265.34 Aligned_cols=7 Identities=14% Similarity=0.320 Sum_probs=3.1
Q ss_pred Cccccce
Q psy16323 4 PFDKHVF 10 (448)
Q Consensus 4 ~~~~~~~ 10 (448)
=||.+..
T Consensus 5 g~~~~~~ 11 (1056)
T 3hqv_A 5 GYDEKSA 11 (1056)
T ss_pred CcCCCcC
Confidence 3444443
No 2
>3hqv_A Collagen alpha-1(I) chain; native, in SITU, molecular envelope, triple-helical, supermolecular, supramolecular, packing structure; 5.16A {Rattus norvegicus} PDB: 3hr2_A
Probab=99.96 E-value=7.5e-27 Score=265.88 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=20.8
Q ss_pred cceeecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy16323 8 HVFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 55 (448)
Q Consensus 8 ~~~~~~~~~~~~~~~~pg~pg~pG~~G~~G~pG~~G~~G~~G~~G~~G 55 (448)
+-|.|.+. -.++.+..|+.+.+|.+|.+|.+|++|.+|.+|++|.+|
T Consensus 4 ~g~~~~~~-g~~~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G 50 (1056)
T 3hqv_A 4 YGYDEKSA-GVSVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPG 50 (1056)
T ss_pred CCcCCCcC-CcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 33444422 334445555444444444444444444444444444433
No 3
>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} PDB: 1ygv_A 3hqv_A 3hr2_A
Probab=99.95 E-value=1.7e-26 Score=261.84 Aligned_cols=8 Identities=13% Similarity=0.194 Sum_probs=3.7
Q ss_pred CCccccce
Q psy16323 3 APFDKHVF 10 (448)
Q Consensus 3 ~~~~~~~~ 10 (448)
.-||.+.-
T Consensus 4 ~~~~~~~~ 11 (1054)
T 1y0f_A 4 YGYDEKST 11 (1054)
T ss_pred cccccccc
Confidence 34555443
No 4
>3hqv_B Collagen alpha-2(I) chain; native, in SITU, molecular envelope, triple-helical, supermolecular, supramolecular, packing structure; 5.16A {Rattus norvegicus} PDB: 3hr2_B
Probab=99.95 E-value=3.9e-26 Score=259.46 Aligned_cols=50 Identities=28% Similarity=0.564 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy16323 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 69 (448)
Q Consensus 20 ~~~~pg~pg~pG~~G~~G~pG~~G~~G~~G~~G~~G~pG~~G~~G~pG~~ 69 (448)
+++.++..++.|++|.+|+.|.+|.+|++|++|++|.+|..|++|.+|+.
T Consensus 7 ~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~ 56 (1028)
T 3hqv_B 7 VSAGPGPMGLMGPRGPPGAVGAPGPQGFQGPAGEPGEPGQTGPAGSRGPA 56 (1028)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 34445555554444444444444444444444444444433333333333
No 5
>4ae2_A Procollagen III, collagen alpha-1(III) chain; structural protein, fibrillar collagen, extracellular matrix fibrosis; 1.68A {Homo sapiens} PDB: 4aej_A* 4ak3_A
Probab=99.84 E-value=5.7e-22 Score=193.65 Aligned_cols=138 Identities=22% Similarity=0.232 Sum_probs=102.9
Q ss_pred ccccccCCCCCCCCCCCCCCCCCceeee-------------------------eccchhHHHhhhhhhccceeeeeccee
Q psy16323 297 VLGSYLGEAGHQKSPKGLEPKPAQISFV-------------------------LNIFANFHQTLRFLHFSCTSLVVTRAT 351 (448)
Q Consensus 297 ~l~sl~g~~g~~~sp~g~~~~P~~~~~v-------------------------i~~~~n~~~~~rfv~~~c~~i~~~r~t 351 (448)
.|++|+.+|+.+++|.|++.+|+++|.+ |.+||||+.. ++| |+..+.+
T Consensus 27 ~l~~l~~~i~~~~~P~Gt~~nPARtC~dl~~~~p~~~sG~YwIDPngg~~~dai~V~Cnmt~g-----~tc--i~~~~~~ 99 (256)
T 4ae2_A 27 SLKSVNGQIESLISPDGSRKNPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETG-----ETC--ISANPLN 99 (256)
T ss_dssp --------------CCSSSSSCBSCHHHHHHHCTTCCSEEEEECTTCSSGGGCEEEEEETTTT-----EEE--ECBSSCE
T ss_pred HHHHHHHHHHhccCCCCCCCCccccHHHHHHcCCCCCCCCEEECCCCCCCCCCEEEEeEeecC-----CcE--Eeccccc
Confidence 3888899999999999999999999998 4778999765 788 6666677
Q ss_pred EeeceeeeeEeccCCceeehhhhhCCCCceeccCCCCCCCCCCCCchhHHHHHHHhhcCCCccee---ecccccCccCCC
Q psy16323 352 VVKLPLYILTVEDDTVILLFIETFIQLPQQAYTTNSFAPMDPSKDDTVILLFIKTCIQLPQQAYT---TNSFAPMDRWTH 428 (448)
Q Consensus 352 v~~~~~~~~~vrkDqk~~WF~Et~~~g~qf~Y~~~~~~~~~~~~d~~vQL~FLrLlS~~A~Q~iT---~nS~a~~d~~~~ 428 (448)
+..+.||... .++++++||+++|+.+++|.|....+.. ....+||+||||||.+|+|+|| +||++|+|....
T Consensus 100 ~~~~~~~~~~-~~~~~~~wf~~~~~gg~~~~Y~~~~~~~----~~~~~QL~fL~llS~~c~Q~ItY~C~~S~~~~d~~~~ 174 (256)
T 4ae2_A 100 VPRKHWWTDS-SAEKKHVWFGESMDGGFQFSYGNPELPE----DVLDVQLAFLRLLSSRASQQITYHCKNSIAYMDQASG 174 (256)
T ss_dssp EEEECCCCC-----CCCCCHHHHSTTCCCCCBSCTTSCH----HHHHHHHHHHHHHCSCEEEEEEEEEESCCSSCBTTTT
T ss_pred cceeeeeccC-CCCCCceeeeeeecCCeeeeecccccCC----CcCHHHHHHHHHhhhceEEEEEEEeCCCcccccCCCC
Confidence 7777777644 5788999999999999999997654422 2467999999999999999999 689999999886
Q ss_pred C-CCceEEeccCccccccc
Q psy16323 429 P-SKAATFLGLLDEDTDEE 446 (448)
Q Consensus 429 ~-~ka~~l~g~nd~e~~~~ 446 (448)
+ +++++|+++||+|+.++
T Consensus 175 ~~~~a~~~~g~N~~~~~~~ 193 (256)
T 4ae2_A 175 NVKKALKLMGSNEGEFKAE 193 (256)
T ss_dssp BCTTCCEEECSSSCEEBSS
T ss_pred CccccEEEEecCCCEEecC
Confidence 6 79999999999999875
No 6
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=64.98 E-value=3.1 Score=37.29 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=37.2
Q ss_pred CCCCceeeeeccch-----hHHHhhhhhhccceeeeec-ceeEeeceeeeeE
Q psy16323 316 PKPAQISFVLNIFA-----NFHQTLRFLHFSCTSLVVT-RATVVKLPLYILT 361 (448)
Q Consensus 316 ~~P~~~~~vi~~~~-----n~~~~~rfv~~~c~~i~~~-r~tv~~~~~~~~~ 361 (448)
..+..++|+||... +|+.++.|+...+..+.+. ..++++++.|+..
T Consensus 19 ~~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~ 70 (199)
T 3zqk_A 19 SMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYM 70 (199)
T ss_dssp CCCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSS
T ss_pred CCCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCc
Confidence 56788999999884 7788888888887777665 4899999999844
No 7
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=61.21 E-value=4.1 Score=36.51 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=37.6
Q ss_pred CCCCceeeeeccch-----hHHHhhhhhhccceeeeecc-eeEeeceeeeeEe
Q psy16323 316 PKPAQISFVLNIFA-----NFHQTLRFLHFSCTSLVVTR-ATVVKLPLYILTV 362 (448)
Q Consensus 316 ~~P~~~~~vi~~~~-----n~~~~~rfv~~~c~~i~~~r-~tv~~~~~~~~~v 362 (448)
.++..++|+||++. +|+.+++|+...+..+.+.+ .++++++.|+..+
T Consensus 11 ~~~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~ 63 (202)
T 1ijb_A 11 SRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGS 63 (202)
T ss_dssp CSCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSE
T ss_pred CCcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCc
Confidence 45788999999883 77888899988887776654 7899999998543
No 8
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=49.49 E-value=6.5 Score=34.47 Aligned_cols=45 Identities=9% Similarity=0.143 Sum_probs=34.2
Q ss_pred CCceeeeeccch-----hHHHhhhhhhccceeeeecceeEeeceeeeeEec
Q psy16323 318 PAQISFVLNIFA-----NFHQTLRFLHFSCTSLVVTRATVVKLPLYILTVE 363 (448)
Q Consensus 318 P~~~~~vi~~~~-----n~~~~~rfv~~~c~~i~~~r~tv~~~~~~~~~vr 363 (448)
|..++|+||.+. +|+.++.|+...+..+. ...++++++.|+..++
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~-~~~~rv~vv~fs~~~~ 51 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCS-NTSYQFAAVQFSTSYK 51 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTT-TSSEEEEEEEESSSEE
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhC-CCCeEEEEEEECCcee
Confidence 567899999883 77888888888876552 3468999999986544
No 9
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=48.09 E-value=9.5 Score=36.01 Aligned_cols=54 Identities=7% Similarity=0.066 Sum_probs=37.0
Q ss_pred CCCCCCCCCCCCceeeeeccch-----hH-HHhhhhhhccceeeeecc-eeEeeceeeeeE
Q psy16323 308 QKSPKGLEPKPAQISFVLNIFA-----NF-HQTLRFLHFSCTSLVVTR-ATVVKLPLYILT 361 (448)
Q Consensus 308 ~~sp~g~~~~P~~~~~vi~~~~-----n~-~~~~rfv~~~c~~i~~~r-~tv~~~~~~~~~ 361 (448)
++...-.-+.++.++|+||++. +| +.+++|+..++..+.+.+ .++++++.|+..
T Consensus 11 i~~~~~~C~~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~ 71 (281)
T 4hqf_A 11 IKYREEVCNDEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNN 71 (281)
T ss_dssp -----CCSCSCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETT
T ss_pred ccCchHhCCCceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCC
Confidence 4444444467899999999983 56 567778888776666543 789999999844
No 10
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=44.34 E-value=8.7 Score=34.07 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=35.2
Q ss_pred CCCCceeeeeccch---hHHHhhhhhhccceeeeecc-eeEeeceeeeeEe
Q psy16323 316 PKPAQISFVLNIFA---NFHQTLRFLHFSCTSLVVTR-ATVVKLPLYILTV 362 (448)
Q Consensus 316 ~~P~~~~~vi~~~~---n~~~~~rfv~~~c~~i~~~r-~tv~~~~~~~~~v 362 (448)
+.+..++|+||++. +|+.+++|+..++..+.+.+ .++++++.|+..+
T Consensus 4 ~~~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~ 54 (200)
T 1v7p_C 4 PSLIDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNP 54 (200)
T ss_dssp --CEEEEEEEECCTTCCCHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSE
T ss_pred CCcccEEEEEECCCCcccHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCc
Confidence 34678899999884 67888888888876666544 8899999998543
No 11
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=44.09 E-value=11 Score=32.99 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=36.2
Q ss_pred CCCCceeeeeccch-----hHHHhhhhhhccceeeeec-ceeEeeceeeeeEec
Q psy16323 316 PKPAQISFVLNIFA-----NFHQTLRFLHFSCTSLVVT-RATVVKLPLYILTVE 363 (448)
Q Consensus 316 ~~P~~~~~vi~~~~-----n~~~~~rfv~~~c~~i~~~-r~tv~~~~~~~~~vr 363 (448)
..+..++|+||++. +|+.+++|+...+..+.+. ..++++++.|+..++
T Consensus 15 ~~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~ 68 (178)
T 2xgg_A 15 TNQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVH 68 (178)
T ss_dssp TTCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE
T ss_pred CCCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceE
Confidence 44788999999883 6777788888887666554 368999999985543
No 12
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=40.30 E-value=11 Score=33.00 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=34.7
Q ss_pred CCCCceeeeeccch-----hHHHhhhhhhccceeeeecceeEeeceeeeeEec
Q psy16323 316 PKPAQISFVLNIFA-----NFHQTLRFLHFSCTSLVVTRATVVKLPLYILTVE 363 (448)
Q Consensus 316 ~~P~~~~~vi~~~~-----n~~~~~rfv~~~c~~i~~~r~tv~~~~~~~~~vr 363 (448)
..+..++|+||++. +|+.+++|+...+..+. ...++++++.|+..++
T Consensus 3 ~~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~-~~~~~v~vv~f~~~~~ 54 (194)
T 1mf7_A 3 QEDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLK-KSKTLFSLMQYSEEFR 54 (194)
T ss_dssp CCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHC-CTTEEEEEEEESSSEE
T ss_pred CCCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEEecCCce
Confidence 35778999999884 66777888877765555 4478899999985543
No 13
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=39.27 E-value=13 Score=35.02 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=36.7
Q ss_pred CCCCCceeeeeccch-----hH-HHhhhhhhccceeeeecc-eeEeeceeeeeEe
Q psy16323 315 EPKPAQISFVLNIFA-----NF-HQTLRFLHFSCTSLVVTR-ATVVKLPLYILTV 362 (448)
Q Consensus 315 ~~~P~~~~~vi~~~~-----n~-~~~~rfv~~~c~~i~~~r-~tv~~~~~~~~~v 362 (448)
-+.++.++|+||++. +| +.+++|+..++..+.+.+ .++++++.|+..+
T Consensus 15 c~~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~ 69 (266)
T 4hqo_A 15 CNEQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYT 69 (266)
T ss_dssp ECCCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSE
T ss_pred cCCceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCc
Confidence 357888999999984 56 366788888877776554 8899999998543
No 14
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=38.99 E-value=14 Score=32.39 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=34.9
Q ss_pred CCCceeeeeccc-----hhHHHhhhhhhccceeeeec-ceeEeeceeeeeEe
Q psy16323 317 KPAQISFVLNIF-----ANFHQTLRFLHFSCTSLVVT-RATVVKLPLYILTV 362 (448)
Q Consensus 317 ~P~~~~~vi~~~-----~n~~~~~rfv~~~c~~i~~~-r~tv~~~~~~~~~v 362 (448)
.+..++|+||++ .+|+.+++|+...+....+. +.++++++.|+..+
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~ 55 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSIT 55 (189)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSE
T ss_pred CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcc
Confidence 567889999988 36778888888877666544 46899999997543
No 15
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=36.25 E-value=14 Score=33.10 Aligned_cols=46 Identities=20% Similarity=0.165 Sum_probs=34.2
Q ss_pred CCCceeeeeccch---hHHHhhhhhhccceeeeec-ceeEeeceeeeeEe
Q psy16323 317 KPAQISFVLNIFA---NFHQTLRFLHFSCTSLVVT-RATVVKLPLYILTV 362 (448)
Q Consensus 317 ~P~~~~~vi~~~~---n~~~~~rfv~~~c~~i~~~-r~tv~~~~~~~~~v 362 (448)
.+..++|+||++. +|+.+++|+..++..+.+. ..++++++.|+..+
T Consensus 6 ~~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~ 55 (213)
T 1pt6_A 6 TQLDIVIVLDGSNSIYPWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENV 55 (213)
T ss_dssp -CEEEEEEEECCTTCCCHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSE
T ss_pred CCccEEEEEECCCChhhHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCc
Confidence 4678899999884 5677788888877666544 48899999998543
No 16
>1t60_A Type IV collagen; basement membrane, NC1 domain, structural protein; 1.50A {Bos taurus} SCOP: d.169.1.6 d.169.1.6 PDB: 1m3d_A 1t61_A 1li1_A
Probab=34.52 E-value=11 Score=35.97 Aligned_cols=21 Identities=24% Similarity=0.545 Sum_probs=19.7
Q ss_pred eecceeEeeceeeeeEeccCC
Q psy16323 346 VVTRATVVKLPLYILTVEDDT 366 (448)
Q Consensus 346 ~~~r~tv~~~~~~~~~vrkDq 366 (448)
||+|++||..+.+.+.||...
T Consensus 104 yISRC~VCe~~~~~ia~HSQt 124 (229)
T 1t60_A 104 FISRCAVCEAPAMVMAVHSQT 124 (229)
T ss_dssp GBCEEEEEEESSCEEEEECSS
T ss_pred hhcccceeecccccEEEecCC
Confidence 899999999999999999875
No 17
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=34.14 E-value=13 Score=33.65 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=34.3
Q ss_pred CCCCceeeeeccch---hHHHhhhhhhccceeeeec-ceeEeeceeeeeEe
Q psy16323 316 PKPAQISFVLNIFA---NFHQTLRFLHFSCTSLVVT-RATVVKLPLYILTV 362 (448)
Q Consensus 316 ~~P~~~~~vi~~~~---n~~~~~rfv~~~c~~i~~~-r~tv~~~~~~~~~v 362 (448)
+.+..++|+||++. +|+.+++|+...+..+.+. ..++++++.|+..+
T Consensus 20 ~~~~div~vlD~SgSM~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~ 70 (223)
T 2b2x_A 20 STQLDIVIVLDGSNSIYPWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENV 70 (223)
T ss_dssp --CEEEEEEEECSTTCCCHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSE
T ss_pred CCcceEEEEEECCCChhhHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCc
Confidence 45788999999884 5677888888887666544 47888888887543
No 18
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=32.75 E-value=13 Score=33.07 Aligned_cols=48 Identities=17% Similarity=0.032 Sum_probs=32.3
Q ss_pred CCCCCceeeeeccch-----hHHHhhhhhhccceeeeec-ceeEeeceeeeeEe
Q psy16323 315 EPKPAQISFVLNIFA-----NFHQTLRFLHFSCTSLVVT-RATVVKLPLYILTV 362 (448)
Q Consensus 315 ~~~P~~~~~vi~~~~-----n~~~~~rfv~~~c~~i~~~-r~tv~~~~~~~~~v 362 (448)
+..+..++|+||++. +|..+++|+...+..+... ..++++++.|+..+
T Consensus 12 ~~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~ 65 (223)
T 1q0p_A 12 PSGSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYP 65 (223)
T ss_dssp ---CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSE
T ss_pred CCCceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCcc
Confidence 356888999999884 6677777777776554432 35788888887544
No 19
>1t60_C Type IV collagen; basement membrane, NC1 domain, structural protein; 1.50A {Bos taurus} PDB: 1m3d_C 1t61_C 1li1_C
Probab=26.36 E-value=18 Score=34.40 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=19.5
Q ss_pred eecceeEeeceeeeeEeccCC
Q psy16323 346 VVTRATVVKLPLYILTVEDDT 366 (448)
Q Consensus 346 ~~~r~tv~~~~~~~~~vrkDq 366 (448)
||+|+.||..+++.+.||...
T Consensus 101 ~ISRC~VCe~~~~~ia~HSQt 121 (227)
T 1t60_C 101 YISRCSVCEAPAVAIAVHSQD 121 (227)
T ss_dssp GBCEEEEEEESSCEEEEECSS
T ss_pred hccccceecccCCceEEecCC
Confidence 799999999999999999875
No 20
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=26.09 E-value=32 Score=29.49 Aligned_cols=45 Identities=7% Similarity=0.169 Sum_probs=31.3
Q ss_pred CCCCceeeeeccch----hHHHhhhhhhccceeeeecceeEeeceeeeeE
Q psy16323 316 PKPAQISFVLNIFA----NFHQTLRFLHFSCTSLVVTRATVVKLPLYILT 361 (448)
Q Consensus 316 ~~P~~~~~vi~~~~----n~~~~~rfv~~~c~~i~~~r~tv~~~~~~~~~ 361 (448)
+.+..++|+||+.. +|...++|+...+..+ +..-.+++++.|+..
T Consensus 5 ~~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~-~~~~~~v~lv~f~~~ 53 (185)
T 3n2n_F 5 YGGFDLYFILDKSGSVLHHWNEIYYFVEQLAHKF-ISPQLRMSFIVFSTR 53 (185)
T ss_dssp BSEEEEEEEEECSGGGGGGHHHHHHHHHHHHHHC-CCTTEEEEEEEESSS
T ss_pred CCCeeEEEEEeCCCChhhhHHHHHHHHHHHHHHh-CCCCcEEEEEEEecC
Confidence 56788999999885 4445566766665554 344688888888743
No 21
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=24.84 E-value=32 Score=29.78 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=41.8
Q ss_pred eceeeeeEeccCCceeehhhhhCCCCceeccCCCCCCCCCCCCchhHHHHH-HHhhcCCCcceeeccccc
Q psy16323 354 KLPLYILTVEDDTVILLFIETFIQLPQQAYTTNSFAPMDPSKDDTVILLFI-KTCIQLPQQAYTTNSFAP 422 (448)
Q Consensus 354 ~~~~~~~~vrkDqk~~WF~Et~~~g~qf~Y~~~~~~~~~~~~d~~vQL~FL-rLlS~~A~Q~iT~nS~a~ 422 (448)
....|++.-+.-.+-+|+...+..+++|.|....|.... +...=+.+| +.|+..+-..|....++|
T Consensus 58 ~~g~~VINkQ~P~~QIWLASp~SGp~hfd~~~~~Wi~~r---dg~~L~~~L~~el~~~~g~~v~~~~l~~ 124 (129)
T 3t3l_A 58 DLGTYVINKQTPNKAIWLSSPSSGPKRYDWTGKNWVYSH---DGVSLHELLAAELTKALKTKLDLSSLAY 124 (129)
T ss_dssp TCCEEEEEEETTTTEEEEECSSSCCEEEEECSSSEEETT---TCCBHHHHHHHHHHHHHTSCCCCTTSTT
T ss_pred CCCEEEEeCCchhhHhheeCCCCCCeeeEecCCEEEECC---CCchHHHHHHHHHHHHhCCceeeeeccc
Confidence 356777776777899999987899999999776664322 333222333 445555455555555444
No 22
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=24.37 E-value=34 Score=29.71 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=33.2
Q ss_pred CCCCceeeeeccch-----hHHHhhhhhhccceeeeecceeEeeceeeeeEe
Q psy16323 316 PKPAQISFVLNIFA-----NFHQTLRFLHFSCTSLVVTRATVVKLPLYILTV 362 (448)
Q Consensus 316 ~~P~~~~~vi~~~~-----n~~~~~rfv~~~c~~i~~~r~tv~~~~~~~~~v 362 (448)
..+..++|+||+.. +|...++++...+..+. ...++++++.|+..+
T Consensus 7 ~~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~-~~~~~v~lv~f~~~~ 57 (198)
T 1n3y_A 7 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQ-RPSTQFSLMQFSNKF 57 (198)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSC-TTTEEEEEEEESSSE
T ss_pred CCCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEEeCCCc
Confidence 46788999999884 55666777777765554 568889999988543
No 23
>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1
Probab=24.01 E-value=16 Score=33.04 Aligned_cols=36 Identities=6% Similarity=0.089 Sum_probs=19.3
Q ss_pred hhhhccceee--eecc--eeEeeceeeeeEeccCCceeeh
Q psy16323 336 RFLHFSCTSL--VVTR--ATVVKLPLYILTVEDDTVILLF 371 (448)
Q Consensus 336 rfv~~~c~~i--~~~r--~tv~~~~~~~~~vrkDqk~~WF 371 (448)
.+.+|+|-.- |... +++....+|..+++++++..+.
T Consensus 83 ~TG~FTaPv~GvY~Fsft~~~~~~~~~v~L~~Ng~~i~~~ 122 (178)
T 1o91_A 83 QTGIFTCEVPGVYYFAYHVHCKGGNVWVALFKNNEPMMYT 122 (178)
T ss_dssp TTTEEECCSCEEEEEEEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred CCCEEEcccCeEEEEEEEEEeccceEEEEEEECCEEEEEE
Confidence 3556777443 4333 3333345666666666655554
No 24
>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1
Probab=22.81 E-value=18 Score=32.79 Aligned_cols=33 Identities=9% Similarity=-0.021 Sum_probs=19.5
Q ss_pred ecceeEeeceeeeeEeccCCceeehhhhhCCCCc
Q psy16323 347 VTRATVVKLPLYILTVEDDTVILLFIETFIQLPQ 380 (448)
Q Consensus 347 ~~r~tv~~~~~~~~~vrkDqk~~WF~Et~~~g~q 380 (448)
+.+|.|.++=.++..+....+.+|..- |.++..
T Consensus 86 ~FTaPv~GvY~Fsft~~~~~~~~~v~L-~~Ng~~ 118 (178)
T 1o91_A 86 IFTCEVPGVYYFAYHVHCKGGNVWVAL-FKNNEP 118 (178)
T ss_dssp EEECCSCEEEEEEEEEEEEEEEEEEEE-EETTEE
T ss_pred EEEcccCeEEEEEEEEEeccceEEEEE-EECCEE
Confidence 455777777666666655556677644 334433
No 25
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=22.66 E-value=25 Score=35.85 Aligned_cols=48 Identities=6% Similarity=0.016 Sum_probs=36.3
Q ss_pred CCCCceeeeeccch-----hHHHhhhhhhccceeeeec-ceeEeeceeeeeEec
Q psy16323 316 PKPAQISFVLNIFA-----NFHQTLRFLHFSCTSLVVT-RATVVKLPLYILTVE 363 (448)
Q Consensus 316 ~~P~~~~~vi~~~~-----n~~~~~rfv~~~c~~i~~~-r~tv~~~~~~~~~vr 363 (448)
..++.++|+||++. +|+.+++|+..++..+.+. ..++++++.|+..++
T Consensus 7 ~~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~ 60 (509)
T 2odp_A 7 SGHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPK 60 (509)
T ss_dssp SSEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEE
T ss_pred CCCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCc
Confidence 45778899999984 6777888888887666544 478999999985543
No 26
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=20.47 E-value=26 Score=37.40 Aligned_cols=47 Identities=15% Similarity=0.045 Sum_probs=36.0
Q ss_pred CCCCceeeeeccch-----hHHHhhhhhhccceeeeec-ceeEeeceeeeeEe
Q psy16323 316 PKPAQISFVLNIFA-----NFHQTLRFLHFSCTSLVVT-RATVVKLPLYILTV 362 (448)
Q Consensus 316 ~~P~~~~~vi~~~~-----n~~~~~rfv~~~c~~i~~~-r~tv~~~~~~~~~v 362 (448)
..++.++||||++. +|+.+++|+..++..+... ..++++++.|+..+
T Consensus 241 ~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~ 293 (741)
T 3hrz_D 241 SGSMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYP 293 (741)
T ss_dssp TCEEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSE
T ss_pred CCceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCC
Confidence 45778899999984 6777888888887776654 36899999998543
Done!