Query psy16323
Match_columns 448
No_of_seqs 398 out of 1522
Neff 5.4
Searched_HMMs 13730
Date Fri Aug 16 18:27:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16323.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16323hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mf7a_ c.62.1.1 (A:) Integrin 69.0 0.97 7E-05 38.3 2.1 47 316-363 3-54 (194)
2 d1atza_ c.62.1.1 (A:) von Will 66.6 1.2 8.6E-05 37.7 2.2 44 317-360 1-50 (184)
3 d1mjna_ c.62.1.1 (A:) Integrin 58.5 1.8 0.00013 36.2 1.8 46 317-363 1-51 (179)
4 d1pt6a_ c.62.1.1 (A:) Integrin 58.3 1.8 0.00013 36.4 1.7 43 319-361 2-48 (192)
5 d1ijba_ c.62.1.1 (A:) von Will 49.1 3.9 0.00028 34.7 2.4 45 317-361 12-62 (202)
6 d1shux_ c.62.1.1 (X:) Capillar 43.5 5.1 0.00037 32.9 2.3 45 316-361 3-51 (181)
7 d1v7pc_ c.62.1.1 (C:) Integrin 42.9 4.4 0.00032 33.8 1.8 42 320-361 3-48 (193)
8 d1jeyb2 c.62.1.4 (B:6-241) Ku8 33.2 11 0.00083 31.5 3.0 43 321-363 5-59 (236)
9 d1q0pa_ c.62.1.1 (A:) Compleme 33.0 5.9 0.00043 33.0 0.9 42 320-361 3-50 (209)
10 d1n3ya_ c.62.1.1 (A:) Integrin 31.5 9.6 0.0007 31.4 2.1 43 318-361 2-49 (189)
11 d1usma_ d.74.1.1 (A:) Pterin-4 21.2 12 0.00086 27.7 0.6 26 316-342 7-32 (80)
No 1
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.95 E-value=0.97 Score=38.30 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=36.5
Q ss_pred CCCCceeeeeccc-----hhHHHhhhhhhccceeeeecceeEeeceeeeeEec
Q psy16323 316 PKPAQISFVLNIF-----ANFHQTLRFLHFSCTSLVVTRATVVKLPLYILTVE 363 (448)
Q Consensus 316 ~~P~~~~~vi~~~-----~n~~~~~rfv~~~c~~i~~~r~tv~~~~~~~~~vr 363 (448)
+.|+.+.|+||.. .+|+.+++|+..++.++... .++++++.|+..++
T Consensus 3 ~~~~DivfvlD~S~s~~~~~~~~~k~f~~~iv~~l~~~-~~rv~vv~fs~~~~ 54 (194)
T d1mf7a_ 3 QEDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKS-KTLFSLMQYSEEFR 54 (194)
T ss_dssp CCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCT-TEEEEEEEESSSEE
T ss_pred CCCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCcC-CceEEEEEEeccce
Confidence 4578899999977 37888899999998776544 47899999985543
No 2
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.63 E-value=1.2 Score=37.67 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=35.4
Q ss_pred CCCceeeeeccch-----hHHHhhhhhhccceeeeec-ceeEeeceeeee
Q psy16323 317 KPAQISFVLNIFA-----NFHQTLRFLHFSCTSLVVT-RATVVKLPLYIL 360 (448)
Q Consensus 317 ~P~~~~~vi~~~~-----n~~~~~rfv~~~c~~i~~~-r~tv~~~~~~~~ 360 (448)
+|+.++|+||.+. +|+.++.|+.+++....+. ..++++++.|+.
T Consensus 1 ~PlDivfliD~S~s~~~~~f~~~k~~v~~~i~~~~i~~~~~rv~vv~f~~ 50 (184)
T d1atza_ 1 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGS 50 (184)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESS
T ss_pred CceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEEec
Confidence 4788999999874 6777888988888777655 488999999973
No 3
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.50 E-value=1.8 Score=36.22 Aligned_cols=46 Identities=9% Similarity=0.132 Sum_probs=35.4
Q ss_pred CCCceeeeeccch-----hHHHhhhhhhccceeeeecceeEeeceeeeeEec
Q psy16323 317 KPAQISFVLNIFA-----NFHQTLRFLHFSCTSLVVTRATVVKLPLYILTVE 363 (448)
Q Consensus 317 ~P~~~~~vi~~~~-----n~~~~~rfv~~~c~~i~~~r~tv~~~~~~~~~vr 363 (448)
.|..+.|+||.+. +|+.++.|+...+..+. .+.+|++++.|+..++
T Consensus 1 g~~DivfllD~S~Si~~~~f~~~k~f~~~~i~~i~-~~~~rvgvv~fs~~~~ 51 (179)
T d1mjna_ 1 GNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCS-NTSYQFAAVQFSTSYK 51 (179)
T ss_dssp CCEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTT-TSSEEEEEEEESSSEE
T ss_pred CCeEEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC-CCceEEEEEEEeeeee
Confidence 3677899998773 78999999999887542 3478999999985443
No 4
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.34 E-value=1.8 Score=36.40 Aligned_cols=43 Identities=19% Similarity=0.123 Sum_probs=34.0
Q ss_pred Cceeeeeccch---hHHHhhhhhhccceeeeecc-eeEeeceeeeeE
Q psy16323 319 AQISFVLNIFA---NFHQTLRFLHFSCTSLVVTR-ATVVKLPLYILT 361 (448)
Q Consensus 319 ~~~~~vi~~~~---n~~~~~rfv~~~c~~i~~~r-~tv~~~~~~~~~ 361 (448)
+.++|++|.+. +|+.+++|+...+...++.. .+|++++.|+..
T Consensus 2 ~DivfvlD~S~S~~~~~~~k~f~~~~i~~~~i~~~~~rv~vv~fs~~ 48 (192)
T d1pt6a_ 2 LDIVIVLDGSNSIYPWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGEN 48 (192)
T ss_dssp EEEEEEEECCTTCCCHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSS
T ss_pred eEEEEEEECCCCCCCHHHHHHHHHHHHHHhccCCCCcEEEEEEEecc
Confidence 35788888763 78888999998887777664 889999999843
No 5
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.11 E-value=3.9 Score=34.68 Aligned_cols=45 Identities=20% Similarity=0.135 Sum_probs=36.1
Q ss_pred CCCceeeeeccc-----hhHHHhhhhhhccceeeeecc-eeEeeceeeeeE
Q psy16323 317 KPAQISFVLNIF-----ANFHQTLRFLHFSCTSLVVTR-ATVVKLPLYILT 361 (448)
Q Consensus 317 ~P~~~~~vi~~~-----~n~~~~~rfv~~~c~~i~~~r-~tv~~~~~~~~~ 361 (448)
+|..+.|+||.. .+|+..+.|+..++..+.+.. .+|++++.|+..
T Consensus 12 ~~~Dl~fvlD~S~S~~~~~f~~~k~fv~~~i~~l~~~~~~~rvavv~y~~~ 62 (202)
T d1ijba_ 12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDG 62 (202)
T ss_dssp SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSS
T ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEEecc
Confidence 578899999966 367788889998887776554 789999999843
No 6
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.54 E-value=5.1 Score=32.92 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=33.1
Q ss_pred CCCCceeeeeccch----hHHHhhhhhhccceeeeecceeEeeceeeeeE
Q psy16323 316 PKPAQISFVLNIFA----NFHQTLRFLHFSCTSLVVTRATVVKLPLYILT 361 (448)
Q Consensus 316 ~~P~~~~~vi~~~~----n~~~~~rfv~~~c~~i~~~r~tv~~~~~~~~~ 361 (448)
++|..++|+||... +|...++|+...+.... .+-++++++.|+..
T Consensus 3 ~~~~Div~llD~S~Sm~~~~~~~k~~~~~~~~~~~-~~~~rvglv~fs~~ 51 (181)
T d1shux_ 3 RRAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFV-SPEMRLSFIVFSSQ 51 (181)
T ss_dssp BSCEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCC-CTTEEEEEEEESSS
T ss_pred CCceEEEEEEeCCCCcccCHHHHHHHHHHHHHHhc-CCCCEEEEEEeecc
Confidence 36788999999884 66667888887765543 33578999999843
No 7
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.88 E-value=4.4 Score=33.85 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=32.9
Q ss_pred ceeeeeccch---hHHHhhhhhhccceeeeec-ceeEeeceeeeeE
Q psy16323 320 QISFVLNIFA---NFHQTLRFLHFSCTSLVVT-RATVVKLPLYILT 361 (448)
Q Consensus 320 ~~~~vi~~~~---n~~~~~rfv~~~c~~i~~~-r~tv~~~~~~~~~ 361 (448)
.+.|++|.+. +|+..++|+...+..+.+. +.+|++++.|+..
T Consensus 3 DivfvlD~S~Sv~~f~~~k~f~~~ii~~~~i~~~~~rv~vv~fs~~ 48 (193)
T d1v7pc_ 3 DVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANN 48 (193)
T ss_dssp EEEEEEECCTTCCCHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSS
T ss_pred EEEEEEECCCCCccHHHHHHHHHHHHHHcccCCCccEEEEEEeecc
Confidence 4678887663 6788899999988777765 4889999999844
No 8
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.25 E-value=11 Score=31.53 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=27.5
Q ss_pred eeeeeccch-----------hHHHhhhhhhccceeee-ecceeEeeceeeeeEec
Q psy16323 321 ISFVLNIFA-----------NFHQTLRFLHFSCTSLV-VTRATVVKLPLYILTVE 363 (448)
Q Consensus 321 ~~~vi~~~~-----------n~~~~~rfv~~~c~~i~-~~r~tv~~~~~~~~~vr 363 (448)
++++||+.. +|+.+++.+...+.... ..+-.++++++|...+.
T Consensus 5 iv~~lD~S~SM~~~~~~~~srl~~ak~~~~~~v~~~~~~~~~d~vglV~f~~~~t 59 (236)
T d1jeyb2 5 VVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGT 59 (236)
T ss_dssp EEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSC
T ss_pred EEEEEECChhhccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcCCCc
Confidence 667777764 35555655555544433 34578999999986643
No 9
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.00 E-value=5.9 Score=32.96 Aligned_cols=42 Identities=19% Similarity=0.074 Sum_probs=32.2
Q ss_pred ceeeeeccc-----hhHHHhhhhhhccceeeeec-ceeEeeceeeeeE
Q psy16323 320 QISFVLNIF-----ANFHQTLRFLHFSCTSLVVT-RATVVKLPLYILT 361 (448)
Q Consensus 320 ~~~~vi~~~-----~n~~~~~rfv~~~c~~i~~~-r~tv~~~~~~~~~ 361 (448)
-++|+||.. .+|..+++|+..++..+.+. ..++++++.|+..
T Consensus 3 DivfvlD~SgSm~~~~~~~~k~~~~~li~~l~~~~~~~rv~lv~f~~~ 50 (209)
T d1q0pa_ 3 NIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATY 50 (209)
T ss_dssp EEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSS
T ss_pred CEEEEEeCCCCCChHHHHHHHHHHHHHHHhcccCCCCcEEEEEEecCc
Confidence 468888877 47888888888887766554 4889999999843
No 10
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.46 E-value=9.6 Score=31.39 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=31.3
Q ss_pred CCceeeeeccch-----hHHHhhhhhhccceeeeecceeEeeceeeeeE
Q psy16323 318 PAQISFVLNIFA-----NFHQTLRFLHFSCTSLVVTRATVVKLPLYILT 361 (448)
Q Consensus 318 P~~~~~vi~~~~-----n~~~~~rfv~~~c~~i~~~r~tv~~~~~~~~~ 361 (448)
++.+.|++|.+. +|..+++|+...+..+... -++++++.|+..
T Consensus 2 e~DivfvlD~S~Sm~~~~~~~~k~~~~~~i~~l~~~-~~rv~vv~fs~~ 49 (189)
T d1n3ya_ 2 EQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRP-STQFSLMQFSNK 49 (189)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTT-TEEEEEEEESSS
T ss_pred CccEEEEEeCCCCCChHHHHHHHHHHHHHHHHhCCC-CCEEEEEEeecc
Confidence 456889998773 6778888888877655432 468899999844
No 11
>d1usma_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) {Thermus thermophilus [TaxId: 274]}
Probab=21.20 E-value=12 Score=27.71 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=18.7
Q ss_pred CCCCceeeeeccchhHHHhhhhhhccc
Q psy16323 316 PKPAQISFVLNIFANFHQTLRFLHFSC 342 (448)
Q Consensus 316 ~~P~~~~~vi~~~~n~~~~~rfv~~~c 342 (448)
.++..|...+ .|.+|..+..||+.+.
T Consensus 7 ~~~~~L~r~f-~f~~f~~~~~Fv~~va 32 (80)
T d1usma_ 7 ENLKRLVKTF-AFPNFREALDFANRVG 32 (80)
T ss_dssp ---CCEEEEE-ECSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEE-EeCCHHHHHHHHHHHH
Confidence 3455677777 7889999999998874
Done!