RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16323
(448 letters)
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 79.6 bits (196), Expect = 1e-15
Identities = 81/314 (25%), Positives = 104/314 (33%), Gaps = 11/314 (3%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLP 75
P RP EP + + PD P S+ P P P P P S + P P
Sbjct: 2570 PPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPP 2629
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
PS A + P P P +P P D P P SS P P +A
Sbjct: 2630 SPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAAR 2689
Query: 136 DLPGP-SSAPDLPGPSSAPDLPGPSSAPDLPGP----SSAPDLPGPSSAPDLPGPSSAPD 190
G +S D P P P+ + P P ++ P +AP P + P
Sbjct: 2690 PTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPA 2749
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPG 247
PG + P P ++ P P P +AP P S S LP P D P
Sbjct: 2750 TPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPA 2809
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGH 307
AP P +A P P +AP P P LP S G +
Sbjct: 2810 AVLAPAAALPPAAS--PAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPP 2867
Query: 308 QKSPKGLEPKPAQI 321
+SP PA+
Sbjct: 2868 SRSPAAKPAAPARP 2881
Score = 78.4 bits (193), Expect = 2e-15
Identities = 68/279 (24%), Positives = 92/279 (32%), Gaps = 12/279 (4%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-----SAPDLPGPSSAPDLPG-PSSAPDL 83
P P P P + +P P AP P+ PD P S+ P P P
Sbjct: 2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRG 2610
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
P P S + P P PS A + P P P +P P D P P
Sbjct: 2611 PAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGPSSAPDLPGP----SSAP 198
SS P P +A G +S D P P P+ + P P ++
Sbjct: 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
P +AP P + P PG + P P ++ P P P +AP P S
Sbjct: 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+ S D P A L ++ P P+ +
Sbjct: 2791 LSESRESLPSPWD-PADPPAAVLAPAAALPPAASPAGPL 2828
Score = 78.1 bits (192), Expect = 4e-15
Identities = 68/283 (24%), Positives = 90/283 (31%), Gaps = 11/283 (3%)
Query: 48 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-----SAPDLPGPSSAPDLPG-PSSAPDL 101
P P P P + +P P AP P+ PD P S+ P P P
Sbjct: 2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRG 2610
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
P P S + P P PS A + P P P +P P D P P
Sbjct: 2611 PAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670
Query: 162 PDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGPSSAPDLPGP----SSAP 216
SS P P +A G +S D P P P+ + P P ++
Sbjct: 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 276
P +AP P + P PG + P P ++ P P P +AP P S
Sbjct: 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790
Query: 277 SAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPA 319
+ S D P + VL L P +
Sbjct: 2791 LSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTS 2833
Score = 72.7 bits (178), Expect = 2e-13
Identities = 67/277 (24%), Positives = 88/277 (31%), Gaps = 6/277 (2%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
P P +AP P + P PG + P P ++ P P P +AP
Sbjct: 2719 TPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAG 2778
Query: 76 GPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
P S S LP P D P AP P +A P P P+
Sbjct: 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG-PLPPPTSAQPT 2837
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
+ P PGP G S AP P P++ P P L P+ +
Sbjct: 2838 APPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRS-PAAKPAAPARPPVRRLARPAVSRSTE 2896
Query: 193 GPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
+ PD P P P P P P P P P P P + +
Sbjct: 2897 SFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPS 2956
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
+P P +PG + P P AP P+S+
Sbjct: 2957 GAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASST 2993
Score = 72.3 bits (177), Expect = 2e-13
Identities = 67/278 (24%), Positives = 91/278 (32%), Gaps = 6/278 (2%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SA 80
P P P + P PG + P P ++ P P P +AP P S S
Sbjct: 2736 PAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESR 2795
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
LP P D P AP P +A P P P++ P PGP G
Sbjct: 2796 ESLPSPWDPADPPAAVLAPAAALPPAASPAG-PLPPPTSAQPTAPPPPPGPPPPSLPLGG 2854
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
S AP P P++ P P L P+ + + PD P P
Sbjct: 2855 SVAPGGDVRRRPPSRS-PAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQA 2913
Query: 201 PG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
P P P P P P P P P + + +P P +PG +
Sbjct: 2914 PPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVA 2973
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
P P AP P+S+ S + +S++
Sbjct: 2974 VPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSL 3011
Score = 71.1 bits (174), Expect = 6e-13
Identities = 75/323 (23%), Positives = 100/323 (30%), Gaps = 19/323 (5%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
P +P P PS A + P P P +P P D P P
Sbjct: 2616 PLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQ 2675
Query: 77 PSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGPSSAPDLPGP----SSAPDLPGP 131
SS P P +A G +S D P P P+ + P P ++ P
Sbjct: 2676 ASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPAL 2735
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SA 188
+AP P + P PG + P P ++ P P P +AP P S S
Sbjct: 2736 PAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESR 2795
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSA--------PDLPGPSSAPDLPGPSSAPDLPGPS 240
LP P D P AP P +A P P++ P PGP G S
Sbjct: 2796 ESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGS 2855
Query: 241 SAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
AP P S P++ P A S+ P P P +
Sbjct: 2856 VAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPP 2915
Query: 298 LGSYLGEAGHQKSPKGLEPKPAQ 320
+ P+ P P +
Sbjct: 2916 PPQPQPQPPPPPQPQPPPPPPPR 2938
Score = 70.4 bits (172), Expect = 9e-13
Identities = 75/316 (23%), Positives = 96/316 (30%), Gaps = 14/316 (4%)
Query: 17 PSTVTERPLEPDLPGP----SSAPDLPGPSSAPDLPGPSSAPDLPGP----SSAPDLPGP 68
S+ +RP +S D P P P+ + P P ++ P
Sbjct: 2676 ASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPAL 2735
Query: 69 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SA 125
+AP P + P PG + P P ++ P P P +AP P S S
Sbjct: 2736 PAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESR 2795
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
LP P D P AP P +A P P P++ P PGP G
Sbjct: 2796 ESLPSPWDPADPPAAVLAPAAALPPAASPAG-PLPPPTSAQPTAPPPPPGPPPPSLPLGG 2854
Query: 186 SSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
S AP P + +AP P S P P+ P AP
Sbjct: 2855 SVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAP 2914
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLG 303
P P P P P P P P L + PS A P + V G
Sbjct: 2915 PPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAV 2974
Query: 304 EAGHQKSPKGLEPKPA 319
P PA
Sbjct: 2975 PRFRVPQPAPSREAPA 2990
Score = 70.0 bits (171), Expect = 1e-12
Identities = 84/355 (23%), Positives = 109/355 (30%), Gaps = 39/355 (10%)
Query: 3 APFDKHVFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 62
APF + + + V RP E P + A PG PD P AP P+
Sbjct: 2462 APFSLSLLLGELFPGAPVYRRPAEARFPFAAGAAPDPGGGGPPD-PDAPPAPSRLAPAIL 2520
Query: 63 PDL---------------------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 95
PD P P P P + +P P AP P
Sbjct: 2521 PDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEP 2580
Query: 96 S-----SAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
+ PD P S+ P P P P P S + P P PS A + P P
Sbjct: 2581 AVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDP 2640
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPD 208
P +P P D P P SS P P +A G +S D
Sbjct: 2641 HPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLAD 2700
Query: 209 LPGPSSAPDLPGPSSAPDLPGP----SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
P P P+ + P P ++ P +AP P + P PG + P P
Sbjct: 2701 PPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP 2760
Query: 265 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPA 319
++ P P P +AP P S + L P PA
Sbjct: 2761 PTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPA 2815
Score = 68.0 bits (166), Expect = 5e-12
Identities = 73/287 (25%), Positives = 93/287 (32%), Gaps = 16/287 (5%)
Query: 24 PLEPDLPGPSSAPDLPGPSSA-PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
P S+ P PGP++A P +AP P + P PG + P P ++ P
Sbjct: 2708 PEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPP 2767
Query: 83 LPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
P P +AP P S S LP P D P AP P +A P
Sbjct: 2768 APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAAS--PA 2825
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLP---GPSSAPDLPGPSSAPDLPGPS 195
P +AP P P LP G S AP P S P++ P
Sbjct: 2826 GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRR 2885
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
A S+ P P P + P P P P P P P P
Sbjct: 2886 LARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945
Query: 256 GPSSAP------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
A +P P +PG + P P AP P+S+
Sbjct: 2946 TTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASS 2992
Score = 64.2 bits (156), Expect = 1e-10
Identities = 73/318 (22%), Positives = 96/318 (30%), Gaps = 39/318 (12%)
Query: 15 YLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPD 73
+ T+ P L P P + P +A P P P P AP
Sbjct: 2454 FFARTILGAPFSLSLLLGELFPGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPS 2513
Query: 74 LPGPSSAPDL---------------------------PGPSSAPDLPGPSSAPDLPGPSS 106
P+ PD P P P P + +P P
Sbjct: 2514 RLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRP 2573
Query: 107 APDLPGPS-----SAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
AP P+ PD P S+ P P P P P S + P P PS
Sbjct: 2574 APRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSP 2633
Query: 161 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
A + P P P +P P D P P SS P P +A G
Sbjct: 2634 AANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVG 2693
Query: 221 P-SSAPDLPGPSSAPDLPGPSSAPDLPGP----SSAPDLPGPSSAPDLPGPSSAPDLPGP 275
+S D P P P+ + P P ++ P +AP P + P PG
Sbjct: 2694 SLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGG 2753
Query: 276 SSAPDLPGPSSAPDLPGP 293
+ P P ++ P P P
Sbjct: 2754 PARPARPPTTAGPPAPAP 2771
Score = 51.1 bits (122), Expect = 1e-06
Identities = 60/263 (22%), Positives = 79/263 (30%), Gaps = 10/263 (3%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
GP P P++ P PGP G S AP P P++ P P
Sbjct: 2826 GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRS-PAAKPAAPARPPVR 2884
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
L P+ + + PD P P P P P P P P P P P
Sbjct: 2885 RLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA 2944
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
+ + +P P +PG + P P AP P+S+ S +
Sbjct: 2945 PTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRV 3004
Query: 210 PGPSSAPDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
+S+ L P P S P D + S DL P P
Sbjct: 3005 SSWASSLALHEETDPPPVSLKQTLWPPD--DTEDSDADSLFDSDSERSDLEALDPLPPEP 3062
Query: 265 -GPSSAPDLPGPSSAPDLPGPSS 286
P + P A PSS
Sbjct: 3063 HDPFAHEPDPATPEAGARESPSS 3085
Score = 40.3 bits (94), Expect = 0.002
Identities = 46/208 (22%), Positives = 61/208 (29%), Gaps = 9/208 (4%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAP 81
RP L P+ + + PD P P P P P P P P P P
Sbjct: 2880 RPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
P + + +P P +PG + P P AP P+S+
Sbjct: 2940 QPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGH 2999
Query: 142 SAPDLPGPSSAPDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
S + +S+ L P P S P D + S DL
Sbjct: 3000 SLSRVSSWASSLALHEETDPPPVSLKQTLWPPD--DTEDSDADSLFDSDSERSDLEALDP 3057
Query: 197 APDLP-GPSSAPDLPGPSSAPDLPGPSS 223
P P P + P A PSS
Sbjct: 3058 LPPEPHDPFAHEPDPATPEAGARESPSS 3085
Score = 40.3 bits (94), Expect = 0.002
Identities = 47/231 (20%), Positives = 69/231 (29%), Gaps = 12/231 (5%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
V PL D+ P+ P + + + P P +A + + G +
Sbjct: 243 VISHPLRGDIAAPAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAAL 302
Query: 80 A---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
A LP P P A + A ++ P P P P P+ P
Sbjct: 303 AGAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTP- 361
Query: 137 LPGPSSAPDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
PSS DL ++ SA P + + P P P+S P
Sbjct: 362 ---PSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTP 418
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
P P + P + D P P P P++ P P A
Sbjct: 419 APTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDA 469
Score = 39.5 bits (92), Expect = 0.004
Identities = 46/193 (23%), Positives = 60/193 (31%), Gaps = 9/193 (4%)
Query: 11 TEADYLPSTVTERPLEPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 69
TE+ LP ERP +P P P P P P P P P P +
Sbjct: 2895 TESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGE 2954
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL- 128
+ +P P +PG + P P AP P+S+ S + +S+ L
Sbjct: 2955 PSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALH 3014
Query: 129 ----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLP 183
P P S P D + S DL P P P + P
Sbjct: 3015 EETDPPPVSLKQTLWPPD--DTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDP 3072
Query: 184 GPSSAPDLPGPSS 196
A PSS
Sbjct: 3073 ATPEAGARESPSS 3085
Score = 38.4 bits (89), Expect = 0.009
Identities = 58/253 (22%), Positives = 76/253 (30%), Gaps = 5/253 (1%)
Query: 71 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
PD PGP G +LP S D+ +A P + L P S L G
Sbjct: 2414 QPDPPGPPDV-RFVGSEEIEELPFVSPGGDVLAGLAADGDPFFARTI-LGAPFSLSLLLG 2471
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
P P + P +A P P P P AP P+ PD P
Sbjct: 2472 -ELFPGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVH 2530
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
S P P P P + +P P AP P+ P
Sbjct: 2531 PRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPD 2590
Query: 250 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQK 309
+ P P + D G P P P PD P P P P++ +
Sbjct: 2591 APPQSARPRAPVDDRGDPRGPAPPSPLP-PDTHAPDPPPPSPSPAANEPDPHPPPTVPPP 2649
Query: 310 SPKGLEPKPAQIS 322
+P P ++S
Sbjct: 2650 ERPRDDPAPGRVS 2662
Score = 37.6 bits (87), Expect = 0.016
Identities = 42/219 (19%), Positives = 57/219 (26%), Gaps = 9/219 (4%)
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
P P P + P P + LP P
Sbjct: 257 PPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAP-PDGVWGAALAGAPLALPAPPDP 315
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
P A + A ++ P P P P P+ P PSS DL
Sbjct: 316 PPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTP----PSSLEDL--- 368
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
SA ++ SA P + + P P P+S P
Sbjct: 369 -SAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASA 427
Query: 255 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
P P + P + D P P P P++ P P
Sbjct: 428 PPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDP 466
Score = 36.1 bits (83), Expect = 0.041
Identities = 47/246 (19%), Positives = 63/246 (25%), Gaps = 13/246 (5%)
Query: 57 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 116
P P P + P P + LP P
Sbjct: 257 PPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAP-PDGVWGAALAGAPLALPAPPDP 315
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
P A + A ++ P P P P P+ P PSS DL
Sbjct: 316 PPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTP----PSSLEDL--- 368
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSA 233
SA ++ SA P + + P P P+S P P P+SA
Sbjct: 369 -SAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASA 427
Query: 234 PDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P P P + + P P+ A D P+ PG
Sbjct: 428 PPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPEPPG 487
Query: 293 PSSTVL 298
L
Sbjct: 488 ADLAEL 493
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 76.0 bits (187), Expect = 1e-14
Identities = 63/277 (22%), Positives = 85/277 (30%), Gaps = 6/277 (2%)
Query: 21 TERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
P P PS APDL PGP A P ++P S A +
Sbjct: 117 PPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPA-AVASDAASSRQAALP 175
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
P ++ P+ P P++A P S+P SS PG S+A D
Sbjct: 176 LSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGAS 235
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
SS S P P P + P +S + P PGP+S+
Sbjct: 236 SSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSS-----RPGPASSSSS 290
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
P S P + P A S SS+ + ++ P PS +
Sbjct: 291 PRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRS 350
Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
P P D P P S+P T
Sbjct: 351 PSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTR 387
Score = 69.8 bits (171), Expect = 1e-12
Identities = 66/308 (21%), Positives = 86/308 (27%), Gaps = 14/308 (4%)
Query: 21 TERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
P PGP + S P + AP P +P PGPSS PD P P+
Sbjct: 64 RFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSS-PDPPPPTPP 122
Query: 81 PDLPGPSSAPDLP-----GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
P P PS APDL S P A + A D A
Sbjct: 123 PASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEET 182
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLP 192
S + P + P SS PG S+A D SS
Sbjct: 183 ARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSS 242
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
S P P P + P +S + P PGP+S+ P S
Sbjct: 243 ESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSS-----RPGPASSSSSPRERSPS 297
Query: 253 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPK 312
P + P A S SS+ + ++ G + P
Sbjct: 298 PSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPP 357
Query: 313 GLEPKPAQ 320
+
Sbjct: 358 PPADPSSP 365
Score = 66.7 bits (163), Expect = 1e-11
Identities = 68/271 (25%), Positives = 88/271 (32%), Gaps = 7/271 (2%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
PGP + S P + AP P +P PGPSS PD P P
Sbjct: 61 ACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSS-PDPPPP 119
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
+ P P PS APDL PGP A P ++P S A +
Sbjct: 120 TPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPA-AVASDAASSRQAALPLSS 178
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
P ++ P+ P P++A P S+P SS PG S+A D SS
Sbjct: 179 PEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSD 238
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
S P P P + P +S + P PGP+S+ P
Sbjct: 239 SSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSS-----RPGPASSSSSPRE 293
Query: 267 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
S P + P A S
Sbjct: 294 RSPSPSPSSPGSGPAPSSPRASSSSSSSRES 324
Score = 66.3 bits (162), Expect = 1e-11
Identities = 57/291 (19%), Positives = 80/291 (27%), Gaps = 7/291 (2%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
P+ S A + P ++ P+ P P++A P
Sbjct: 148 PAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPP 207
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
S+P SS PG S+A D SS S P P P + P
Sbjct: 208 RRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPT 267
Query: 137 LPGPSSAPD----LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
+S + PGP+S+ P S P + P A S
Sbjct: 268 RIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSS 327
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
SS+ + ++ P PS +P P D P P S+P
Sbjct: 328 STSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTR 387
Query: 253 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSTVLGS 300
+ A + P S D S A P T G
Sbjct: 388 RRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSGE 438
Score = 66.0 bits (161), Expect = 2e-11
Identities = 56/279 (20%), Positives = 81/279 (29%), Gaps = 9/279 (3%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
L + P P + A S A + P ++ P+ P
Sbjct: 138 LRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPST 197
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
P++A P S+P SS PG S+A D SS S P
Sbjct: 198 PPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPL 257
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
P P + P +S + P PGP+S+ P S P + P
Sbjct: 258 PRPAPITLPTRIWEASGWNGPSS-----RPGPASSSSSPRERSPSPSPSSPGSGPAPSSP 312
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
A S SS+ + ++ P PS +P P D P P
Sbjct: 313 RASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRP--- 369
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
S +SA + + G + D G
Sbjct: 370 -RPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRF 407
Score = 62.5 bits (152), Expect = 2e-10
Identities = 56/278 (20%), Positives = 77/278 (27%), Gaps = 5/278 (1%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
LP + E P+ P P++A P S+P SS PG S+A D
Sbjct: 174 LPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAG 233
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
SS S P P P + P +S + P PGP+S+
Sbjct: 234 ASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSS-----RPGPASSS 288
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
P S P + P A S SS+ + ++ P PS
Sbjct: 289 SSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPS 348
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
+P P D P P S+P + A + P
Sbjct: 349 RSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFP 408
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
P +A P P P P
Sbjct: 409 AGRPRPSPLDAGAASGAFYARYPLLTPSGEPWPGSPPP 446
Score = 59.4 bits (144), Expect = 2e-09
Identities = 63/301 (20%), Positives = 87/301 (28%), Gaps = 2/301 (0%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 72
++ P D S L S+ + P P P
Sbjct: 18 GEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGT 77
Query: 73 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGPSSAPDLPGP 131
+ P S S P+ P + P P + P P PS APDL
Sbjct: 78 EAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEM 137
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
PGP A P ++P S A + P ++ P+ P
Sbjct: 138 LRPVGSPGPPPAASPPAAGASPA-AVASDAASSRQAALPLSSPEETARAPSSPPAEPPPS 196
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
P++A P S+P SS PG S+A D SS S P
Sbjct: 197 TPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECP 256
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSP 311
P P + P +S + P P S P PS + GS + + S
Sbjct: 257 LPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASS 316
Query: 312 K 312
Sbjct: 317 S 317
Score = 56.7 bits (137), Expect = 2e-08
Identities = 61/276 (22%), Positives = 84/276 (30%), Gaps = 5/276 (1%)
Query: 44 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 103
P P + P G + + +A PG
Sbjct: 18 GEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVA---GAAACDRFEPPTGPPPG 74
Query: 104 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 163
P + S P + AP P +P PGPSS PD P P+ P P PS APD
Sbjct: 75 PGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSS-PDPPPPTPPPASPPPSPAPD 133
Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 223
L PGP A P ++P S A + P ++ P+
Sbjct: 134 LSEMLRPVGSPGPPPAASPPAAGASPA-AVASDAASSRQAALPLSSPEETARAPSSPPAE 192
Query: 224 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
P P++A P S+P SS PG S+A D SS S P
Sbjct: 193 PPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPE 252
Query: 284 PSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPA 319
P P + + + S + +
Sbjct: 253 NECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSS 288
Score = 54.8 bits (132), Expect = 6e-08
Identities = 62/252 (24%), Positives = 83/252 (32%), Gaps = 5/252 (1%)
Query: 71 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
P P + P G + + +A PG
Sbjct: 18 GEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVA---GAAACDRFEPPTGPPPG 74
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
P + S P + AP P +P PGPSS PD P P+ P P PS APD
Sbjct: 75 PGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSS-PDPPPPTPPPASPPPSPAPD 133
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
L PGP A P ++P S A + P ++ P+
Sbjct: 134 LSEMLRPVGSPGPPPAASPPAAGASPA-AVASDAASSRQAALPLSSPEETARAPSSPPAE 192
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKS 310
P P++A P S+P SS PG S+A D SS S G
Sbjct: 193 PPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPE 252
Query: 311 PKGLEPKPAQIS 322
+ P+PA I+
Sbjct: 253 NECPLPRPAPIT 264
Score = 47.1 bits (112), Expect = 2e-05
Identities = 34/201 (16%), Positives = 51/201 (25%)
Query: 12 EADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 71
+ P P + P+ + G + PGP+S+ P S P +
Sbjct: 246 GCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGS 305
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
P A S SS+ + ++ P PS +P P D P
Sbjct: 306 GPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSP 365
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
P S+P + A + P P +A
Sbjct: 366 RKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGA 425
Query: 192 PGPSSAPDLPGPSSAPDLPGP 212
P P P P
Sbjct: 426 FYARYPLLTPSGEPWPGSPPP 446
Score = 46.7 bits (111), Expect = 2e-05
Identities = 46/238 (19%), Positives = 64/238 (26%), Gaps = 3/238 (1%)
Query: 11 TEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 70
+ S +S+ D S+ GP + LP P+
Sbjct: 212 PISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWE 271
Query: 71 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
A GPSS P SS+P PS +P PG + P A S
Sbjct: 272 ASGWNGPSSRPGPASSSSSPRERSPSPSPSSPG---SGPAPSSPRASSSSSSSRESSSSS 328
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
SS+ + ++ P PS +P P D P P S+P
Sbjct: 329 TSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRR 388
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
+ A + P P +A P P P P
Sbjct: 389 RARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSGEPWPGSPPP 446
Score = 30.5 bits (69), Expect = 2.4
Identities = 30/161 (18%), Positives = 42/161 (26%), Gaps = 3/161 (1%)
Query: 53 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 112
L + + P P A GP++ S
Sbjct: 765 PAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKS--- 821
Query: 113 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 172
S PD SS P P ++A P SS P++A + P P
Sbjct: 822 RSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRA 881
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 213
PG ++ P + P P P GP
Sbjct: 882 RPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPD 922
Score = 30.5 bits (69), Expect = 2.4
Identities = 30/161 (18%), Positives = 42/161 (26%), Gaps = 3/161 (1%)
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
L + + P P A GP++ S
Sbjct: 765 PAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKS--- 821
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
S PD SS P P ++A P SS P++A + P P
Sbjct: 822 RSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRA 881
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
PG ++ P + P P P GP
Sbjct: 882 RPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPD 922
Score = 30.5 bits (69), Expect = 2.4
Identities = 30/161 (18%), Positives = 42/161 (26%), Gaps = 3/161 (1%)
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
L + + P P A GP++ S
Sbjct: 765 PAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKS--- 821
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 226
S PD SS P P ++A P SS P++A + P P
Sbjct: 822 RSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRA 881
Query: 227 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
PG ++ P + P P P GP
Sbjct: 882 RPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPD 922
Score = 30.5 bits (69), Expect = 2.4
Identities = 30/161 (18%), Positives = 42/161 (26%), Gaps = 3/161 (1%)
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
L + + P P A GP++ S
Sbjct: 765 PAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKS--- 821
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
S PD SS P P ++A P SS P++A + P P
Sbjct: 822 RSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRA 881
Query: 254 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
PG ++ P + P P P GP
Sbjct: 882 RPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPD 922
Score = 30.5 bits (69), Expect = 2.5
Identities = 29/153 (18%), Positives = 41/153 (26%), Gaps = 3/153 (1%)
Query: 34 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 93
+ + P P A GP++ S S PD
Sbjct: 773 ALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKS---RSHTPDGG 829
Query: 94 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 153
SS P P ++A P SS P++A + P P PG ++ P
Sbjct: 830 SESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPP 889
Query: 154 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
+ P P P GP
Sbjct: 890 KAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPD 922
Score = 29.4 bits (66), Expect = 5.6
Identities = 28/154 (18%), Positives = 40/154 (25%), Gaps = 3/154 (1%)
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
L + + P P A GP++ S
Sbjct: 765 PAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKS--- 821
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
S PD SS P P ++A P SS P++A + P P
Sbjct: 822 RSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRA 881
Query: 263 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
PG ++ P + P P P
Sbjct: 882 RPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGP 915
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 69.1 bits (169), Expect = 2e-12
Identities = 49/227 (21%), Positives = 77/227 (33%), Gaps = 12/227 (5%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
GP++A P AP P++A P A P++A ++AP P+
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
++ PG + AP + P ++ P GP + A P +
Sbjct: 433 LAAARQASARGPGGAPAP----APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
AP P +LP P+ P+ A P+ P A P + P
Sbjct: 489 PAPADDDPPPWEELP-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP 543
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLP 255
P++AP P ++A + P G P+ A LP
Sbjct: 544 APAAAP-APRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589
Score = 69.1 bits (169), Expect = 2e-12
Identities = 49/227 (21%), Positives = 77/227 (33%), Gaps = 12/227 (5%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
GP++A P AP P++A P A P++A ++AP P+
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 159
++ PG + AP + P ++ P GP + A P +
Sbjct: 433 LAAARQASARGPGGAPAP----APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488
Query: 160 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
AP P +LP P+ P+ A P+ P A P + P
Sbjct: 489 PAPADDDPPPWEELP-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP 543
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLP 264
P++AP P ++A + P G P+ A LP
Sbjct: 544 APAAAP-APRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589
Score = 69.1 bits (169), Expect = 2e-12
Identities = 49/227 (21%), Positives = 77/227 (33%), Gaps = 12/227 (5%)
Query: 49 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 108
GP++A P AP P++A P A P++A ++AP P+
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432
Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 168
++ PG + AP + P ++ P GP + A P +
Sbjct: 433 LAAARQASARGPGGAPAP----APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488
Query: 169 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
AP P +LP P+ P+ A P+ P A P + P
Sbjct: 489 PAPADDDPPPWEELP-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP 543
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLP 273
P++AP P ++A + P G P+ A LP
Sbjct: 544 APAAAP-APRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589
Score = 69.1 bits (169), Expect = 2e-12
Identities = 49/227 (21%), Positives = 77/227 (33%), Gaps = 12/227 (5%)
Query: 58 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 117
GP++A P AP P++A P A P++A ++AP P+
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432
Query: 118 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 177
++ PG + AP + P ++ P GP + A P +
Sbjct: 433 LAAARQASARGPGGAPAP----APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488
Query: 178 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
AP P +LP P+ P+ A P+ P A P + P
Sbjct: 489 PAPADDDPPPWEELP-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP 543
Query: 238 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLP 282
P++AP P ++A + P G P+ A LP
Sbjct: 544 APAAAP-APRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589
Score = 69.1 bits (169), Expect = 2e-12
Identities = 49/227 (21%), Positives = 77/227 (33%), Gaps = 12/227 (5%)
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
GP++A P AP P++A P A P++A ++AP P+
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
++ PG + AP + P ++ P GP + A P +
Sbjct: 433 LAAARQASARGPGGAPAP----APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
AP P +LP P+ P+ A P+ P A P + P
Sbjct: 489 PAPADDDPPPWEELP-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP 543
Query: 247 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLP 291
P++AP P ++A + P G P+ A LP
Sbjct: 544 APAAAP-APRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589
Score = 68.0 bits (166), Expect = 4e-12
Identities = 45/217 (20%), Positives = 72/217 (33%), Gaps = 10/217 (4%)
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
GP++A P AP P++A P A P++A ++AP P+
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
++ PG + AP + P ++ P GP + A P +
Sbjct: 433 LAAARQASARGPGGAPAP----APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
AP P +LP P+ P+ A P+ P A P + P
Sbjct: 489 PAPADDDPPPWEELP-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP 543
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
P++AP P ++A + P G
Sbjct: 544 APAAAP-APRAAAATEPVVAPRPPRASASGLPDMFDG 579
Score = 65.7 bits (160), Expect = 2e-11
Identities = 44/210 (20%), Positives = 71/210 (33%), Gaps = 10/210 (4%)
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
GP++A P AP P++A P A P++A ++AP P+
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
++ PG + AP + P ++ P GP + A P +
Sbjct: 433 LAAARQASARGPGGAPAP----APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
AP P +LP P+ P+ A P+ P A P + P
Sbjct: 489 PAPADDDPPPWEELP-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP 543
Query: 265 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
P++AP P ++A + P
Sbjct: 544 APAAAP-APRAAAATEPVVAPRPPRASASG 572
Score = 65.3 bits (159), Expect = 3e-11
Identities = 46/219 (21%), Positives = 72/219 (32%), Gaps = 12/219 (5%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
P AP P++A P A P++A ++AP P+ ++
Sbjct: 381 PVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQAS 440
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
PG + AP + P ++ P GP + A P + AP P
Sbjct: 441 ARGPGGAPAP----APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDP 496
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
+LP P+ P+ A P+ P A P + P P++AP
Sbjct: 497 PPWEELP-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAP-A 550
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLP 246
P ++A + P G P+ A LP
Sbjct: 551 PRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589
Score = 63.0 bits (153), Expect = 1e-10
Identities = 44/213 (20%), Positives = 70/213 (32%), Gaps = 12/213 (5%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P P++A P A P++A ++AP P+ ++ PG
Sbjct: 387 PAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
+ AP + P ++ P GP + A P + AP P +L
Sbjct: 447 APAP----APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEEL 502
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
P P+ P+ A P+ P A P + P P++AP P ++A
Sbjct: 503 P-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAP-APRAAAA 556
Query: 207 PDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLP 237
+ P G P+ A LP
Sbjct: 557 TEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589
Score = 59.5 bits (144), Expect = 2e-09
Identities = 47/218 (21%), Positives = 73/218 (33%), Gaps = 13/218 (5%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 72
A P+ P P A P++A ++AP P+ ++
Sbjct: 383 AQPAPAAAAPAAAAPA-PAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASA 441
Query: 73 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
PG + AP P P++A P ++ P GP + A P + AP P
Sbjct: 442 RGPGGAPAP-APAPAAA---PAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPP 497
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
+LP P+ P+ A P+ P A P + P P++AP P
Sbjct: 498 PWEELP-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAP-AP 551
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLP 228
++A + P G P+ A LP
Sbjct: 552 RAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589
Score = 57.2 bits (138), Expect = 1e-08
Identities = 39/181 (21%), Positives = 60/181 (33%), Gaps = 9/181 (4%)
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
GP++A P AP P++A P A P++A ++AP P+
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
++ PG + AP + P ++ P GP + A P +
Sbjct: 433 LAAARQASARGPGGAPAP----APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKP 318
AP P +LP P+ P+ A P+ V S A P
Sbjct: 489 PAPADDDPPPWEELP-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP 543
Query: 319 A 319
A
Sbjct: 544 A 544
Score = 29.5 bits (66), Expect = 4.2
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
PG S P ++A + P+ A P ++ P++ P ++A ++A
Sbjct: 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAA--RAVAAA 422
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
P P+ ++ PG + AP P P++AP
Sbjct: 423 PARRSPAPEALAAARQASARGPGGAPAP-APAPAAAP 458
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 66.9 bits (164), Expect = 9e-12
Identities = 38/197 (19%), Positives = 56/197 (28%), Gaps = 1/197 (0%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
GP+ AP GP P +AP P + +
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
+P S D P+ A + P + A + P
Sbjct: 648 AAPEHHPKHVAVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
++ P A P + P P++ +P P D P P+ AP P P AP
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766
Query: 210 PGPSSAPDLPGPSSAPD 226
+A P P S +
Sbjct: 767 AAAPAAAPPPSPPSEEE 783
Score = 66.9 bits (164), Expect = 9e-12
Identities = 38/197 (19%), Positives = 56/197 (28%), Gaps = 1/197 (0%)
Query: 39 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 98
GP+ AP GP P +AP P + +
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 158
+P S D P+ A + P + A + P
Sbjct: 648 AAPEHHPKHVAVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706
Query: 159 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
++ P A P + P P++ +P P D P P+ AP P P AP
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766
Query: 219 PGPSSAPDLPGPSSAPD 235
+A P P S +
Sbjct: 767 AAAPAAAPPPSPPSEEE 783
Score = 66.9 bits (164), Expect = 9e-12
Identities = 38/197 (19%), Positives = 56/197 (28%), Gaps = 1/197 (0%)
Query: 48 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 107
GP+ AP GP P +AP P + +
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647
Query: 108 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 167
+P S D P+ A + P + A + P
Sbjct: 648 AAPEHHPKHVAVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706
Query: 168 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 227
++ P A P + P P++ +P P D P P+ AP P P AP
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766
Query: 228 PGPSSAPDLPGPSSAPD 244
+A P P S +
Sbjct: 767 AAAPAAAPPPSPPSEEE 783
Score = 66.9 bits (164), Expect = 9e-12
Identities = 38/197 (19%), Positives = 56/197 (28%), Gaps = 1/197 (0%)
Query: 57 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 116
GP+ AP GP P +AP P + +
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
+P S D P+ A + P + A + P
Sbjct: 648 AAPEHHPKHVAVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
++ P A P + P P++ +P P D P P+ AP P P AP
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766
Query: 237 PGPSSAPDLPGPSSAPD 253
+A P P S +
Sbjct: 767 AAAPAAAPPPSPPSEEE 783
Score = 66.9 bits (164), Expect = 9e-12
Identities = 38/197 (19%), Positives = 56/197 (28%), Gaps = 1/197 (0%)
Query: 66 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
GP+ AP GP P +AP P + +
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
+P S D P+ A + P + A + P
Sbjct: 648 AAPEHHPKHVAVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
++ P A P + P P++ +P P D P P+ AP P P AP
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766
Query: 246 PGPSSAPDLPGPSSAPD 262
+A P P S +
Sbjct: 767 AAAPAAAPPPSPPSEEE 783
Score = 66.9 bits (164), Expect = 9e-12
Identities = 38/197 (19%), Positives = 56/197 (28%), Gaps = 1/197 (0%)
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
GP+ AP GP P +AP P + +
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
+P S D P+ A + P + A + P
Sbjct: 648 AAPEHHPKHVAVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
++ P A P + P P++ +P P D P P+ AP P P AP
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766
Query: 255 PGPSSAPDLPGPSSAPD 271
+A P P S +
Sbjct: 767 AAAPAAAPPPSPPSEEE 783
Score = 63.1 bits (154), Expect = 1e-10
Identities = 37/187 (19%), Positives = 54/187 (28%), Gaps = 1/187 (0%)
Query: 22 ERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
E P P GP P +AP P + +
Sbjct: 598 EGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHV 657
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
+P S D P+ A + P + A + P ++ P
Sbjct: 658 AVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADD 716
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
A P + P P++ +P P D P P+ AP P P AP +A P
Sbjct: 717 PAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPP 776
Query: 202 GPSSAPD 208
P S +
Sbjct: 777 SPPSEEE 783
Score = 62.3 bits (152), Expect = 3e-10
Identities = 33/211 (15%), Positives = 50/211 (23%), Gaps = 6/211 (2%)
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
GP+ AP GP P +AP P + +
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
+P S D P+ A + P + A + P
Sbjct: 648 AAPEHHPKHVAVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
++ P A P + P P++ +P P P P P
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVP----LPPEPDDPPDPAGAPAQPPPP- 761
Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
P P+ A + PS
Sbjct: 762 PAPAPAAAPAAAPPPSPPSEEEEMAEDDAPS 792
Score = 61.9 bits (151), Expect = 3e-10
Identities = 34/185 (18%), Positives = 51/185 (27%), Gaps = 1/185 (0%)
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
GP+ AP GP P +AP P + +
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
+P S D P+ A + P + A + P
Sbjct: 648 AAPEHHPKHVAVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
++ P A P + P P++ +P P D P P+ AP P P AP
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766
Query: 291 PGPSS 295
+
Sbjct: 767 AAAPA 771
Score = 61.5 bits (150), Expect = 4e-10
Identities = 34/183 (18%), Positives = 52/183 (28%), Gaps = 1/183 (0%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
+ P E P +AP P + + +P
Sbjct: 602 APASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPD 661
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
S D P+ A + P + A + P ++ P A
Sbjct: 662 ASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQ 720
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
P + P P++ +P P D P P+ AP P P AP +A P P S
Sbjct: 721 PPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPS 780
Query: 197 APD 199
+
Sbjct: 781 EEE 783
Score = 60.4 bits (147), Expect = 1e-09
Identities = 44/196 (22%), Positives = 64/196 (32%), Gaps = 5/196 (2%)
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
GP+ AP GP P +AP +AP G ++AP + A
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAP---AAPAAPAPAGAAAAPAEASAAPA 644
Query: 162 PDLPGPSSAPDLPG--PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
P + P P +S P+ A + P + A + P
Sbjct: 645 PGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPA 704
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 279
++ P A P + P P++ +P P D P P+ AP P P AP
Sbjct: 705 PAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAP 764
Query: 280 DLPGPSSAPDLPGPSS 295
+A P P S
Sbjct: 765 APAAAPAAAPPPSPPS 780
Score = 58.5 bits (142), Expect = 4e-09
Identities = 32/194 (16%), Positives = 50/194 (25%), Gaps = 1/194 (0%)
Query: 129 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
GP+ AP GP P +AP P + +
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
+P S D P+ A + P + A + P
Sbjct: 648 AAPEHHPKHVAVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706
Query: 249 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQ 308
++ P A P + P P++ +P P D P P+ A
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766
Query: 309 KSPKGLEPKPAQIS 322
+ P P+ S
Sbjct: 767 AAAPAAAPPPSPPS 780
Score = 49.2 bits (118), Expect = 3e-06
Identities = 32/140 (22%), Positives = 50/140 (35%)
Query: 18 STVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 77
++ ER L L + G + AP PS+A P + AP P++A
Sbjct: 367 ASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPA 426
Query: 78 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 137
++ P P+ AP P P+ G S P PS+ P ++ P+ AP
Sbjct: 427 AAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPA 486
Query: 138 PGPSSAPDLPGPSSAPDLPG 157
+A + A
Sbjct: 487 APAPAAAPAAPAAPAAPAGA 506
Score = 48.1 bits (115), Expect = 8e-06
Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 2/125 (1%)
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
+ G + AP PS+A P + AP P++A ++ P P+ AP P P+
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446
Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
G S P PS+ P ++ P+ AP +A P +AP P
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAA--PAAPAAPAAPA 504
Query: 293 PSSTV 297
+
Sbjct: 505 GADDA 509
Score = 48.1 bits (115), Expect = 8e-06
Identities = 28/120 (23%), Positives = 44/120 (36%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
+ G + AP PS+A P + AP P++A ++ P P+ AP P P+
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
G S P PS+ P ++ P+ AP +A + A
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
Score = 48.1 bits (115), Expect = 8e-06
Identities = 28/120 (23%), Positives = 44/120 (36%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
+ G + AP PS+A P + AP P++A ++ P P+ AP P P+
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
G S P PS+ P ++ P+ AP +A + A
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
Score = 48.1 bits (115), Expect = 8e-06
Identities = 28/120 (23%), Positives = 44/120 (36%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
+ G + AP PS+A P + AP P++A ++ P P+ AP P P+
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
G S P PS+ P ++ P+ AP +A + A
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
Score = 48.1 bits (115), Expect = 8e-06
Identities = 28/120 (23%), Positives = 44/120 (36%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
+ G + AP PS+A P + AP P++A ++ P P+ AP P P+
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
G S P PS+ P ++ P+ AP +A + A
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
Score = 48.1 bits (115), Expect = 8e-06
Identities = 28/120 (23%), Positives = 44/120 (36%)
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
+ G + AP PS+A P + AP P++A ++ P P+ AP P P+
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
G S P PS+ P ++ P+ AP +A + A
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
Score = 48.1 bits (115), Expect = 8e-06
Identities = 28/120 (23%), Positives = 44/120 (36%)
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
+ G + AP PS+A P + AP P++A ++ P P+ AP P P+
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446
Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
G S P PS+ P ++ P+ AP +A + A
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
Score = 48.1 bits (115), Expect = 8e-06
Identities = 28/120 (23%), Positives = 44/120 (36%)
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
+ G + AP PS+A P + AP P++A ++ P P+ AP P P+
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446
Query: 161 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
G S P PS+ P ++ P+ AP +A + A
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
Score = 48.1 bits (115), Expect = 8e-06
Identities = 28/120 (23%), Positives = 44/120 (36%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
+ G + AP PS+A P + AP P++A ++ P P+ AP P P+
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
G S P PS+ P ++ P+ AP +A + A
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
Score = 48.1 bits (115), Expect = 8e-06
Identities = 28/120 (23%), Positives = 44/120 (36%)
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
+ G + AP PS+A P + AP P++A ++ P P+ AP P P+
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446
Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
G S P PS+ P ++ P+ AP +A + A
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
Score = 48.1 bits (115), Expect = 8e-06
Identities = 28/120 (23%), Positives = 44/120 (36%)
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
+ G + AP PS+A P + AP P++A ++ P P+ AP P P+
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
G S P PS+ P ++ P+ AP +A + A
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
Score = 48.1 bits (115), Expect = 8e-06
Identities = 28/120 (23%), Positives = 44/120 (36%)
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
+ G + AP PS+A P + AP P++A ++ P P+ AP P P+
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446
Query: 197 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
G S P PS+ P ++ P+ AP +A + A
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
Score = 48.1 bits (115), Expect = 8e-06
Identities = 28/120 (23%), Positives = 44/120 (36%)
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
+ G + AP PS+A P + AP P++A ++ P P+ AP P P+
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
G S P PS+ P ++ P+ AP +A + A
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
Score = 48.1 bits (115), Expect = 8e-06
Identities = 28/120 (23%), Positives = 44/120 (36%)
Query: 155 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 214
+ G + AP PS+A P + AP P++A ++ P P+ AP P P+
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446
Query: 215 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
G S P PS+ P ++ P+ AP +A + A
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
Score = 48.1 bits (115), Expect = 8e-06
Identities = 28/120 (23%), Positives = 44/120 (36%)
Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 223
+ G + AP PS+A P + AP P++A ++ P P+ AP P P+
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446
Query: 224 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
G S P PS+ P ++ P+ AP +A + A
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
Score = 46.9 bits (112), Expect = 2e-05
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+ G + AP PS+A P + AP P++A ++ P P+ AP P P+
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLP 147
G S P PS+ P ++ P+ AP P P++AP P +AP
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP--A 504
Query: 148 GPSSAPDL 155
G A L
Sbjct: 505 GADDAATL 512
Score = 44.2 bits (105), Expect = 1e-04
Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 3/122 (2%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
P PS+A P + AP P++A ++ P P+ AP P P+ G
Sbjct: 393 APAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGG 452
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPGPSSAP 144
S P PS+ P ++ P+ AP P P++AP P +AP G A
Sbjct: 453 APSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP--AGADDAA 510
Query: 145 DL 146
L
Sbjct: 511 TL 512
Score = 41.9 bits (99), Expect = 6e-04
Identities = 28/165 (16%), Positives = 43/165 (26%), Gaps = 6/165 (3%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
++ P +P S D P+ A + P + A
Sbjct: 638 EASAAPAPGVAAPEHHPKHVAVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGA 696
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSS 133
+ P ++ P A P + P P++ P P P PD G +
Sbjct: 697 APAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPA 756
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGP 176
P P + P + P P A D D
Sbjct: 757 QPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDA 801
Score = 40.0 bits (94), Expect = 0.003
Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 5/113 (4%)
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
+ ++AP + A ++AP + ++ P P+ AP
Sbjct: 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAP-----AAAPQPAPAPAPAP 439
Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
P P+ G S P PS+ P ++ P+ AP +
Sbjct: 440 APPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAA 492
Score = 29.6 bits (67), Expect = 4.8
Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 1/113 (0%)
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
+ G + AP PS+A P + AP P++A ++ P P+ AP P P+
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446
Query: 269 APDL-PGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPAQ 320
PS P + P + + +P PA
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAA 499
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 53.3 bits (128), Expect = 2e-07
Identities = 52/274 (18%), Positives = 82/274 (29%), Gaps = 14/274 (5%)
Query: 30 PGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPG 85
AP P+ PG +A + + +A P +A
Sbjct: 362 VTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAAT 421
Query: 86 PSSAPDL-PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
+ AP P P + D ++ D P P+ A S D D G +SAP
Sbjct: 422 RAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPAD-SGSASAP 480
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
P A P P +A +A +A +A P P + P P +
Sbjct: 481 ASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAA 540
Query: 205 SAPDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
+ G ++A + S ++ P P++AP P A +P P
Sbjct: 541 APAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAA-PAAAPKPAAPRVAVQVPTP 599
Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
+ +A P D+P
Sbjct: 600 RARAATGDAPPNGAARAEQAAESRGAPPPWEDIP 633
Score = 52.5 bits (126), Expect = 3e-07
Identities = 38/188 (20%), Positives = 60/188 (31%), Gaps = 2/188 (1%)
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
PG + G AP ++ P+ +A P ++A +
Sbjct: 368 PGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALA-PKAAAAAAATRAEAP 426
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
P P P + D ++ D P P+ A S D D G +SAP P
Sbjct: 427 PAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPAD-SGSASAPASDAP 485
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
A P P +A +A +A +A P P + P P ++
Sbjct: 486 PDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAAR 545
Query: 291 PGPSSTVL 298
G ++ L
Sbjct: 546 AGGAAAAL 553
Score = 48.3 bits (115), Expect = 6e-06
Identities = 48/285 (16%), Positives = 77/285 (27%), Gaps = 26/285 (9%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
+P P + +SA + + ++ + P + AP
Sbjct: 380 VPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRG 439
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDL---PGPSSAP 144
G + P + A P S P + PD P P +A
Sbjct: 440 DDAADGDAPVPA-KANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAA 498
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------- 197
+A +A +A P P + P P ++ G ++A
Sbjct: 499 PSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRN 558
Query: 198 -------------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
P++AP +AP + P + G + A
Sbjct: 559 AGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQ 618
Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
AP P PD P SA + G +P S PD
Sbjct: 619 AAESRGAPP-PWEDIPPDDYVPLSADEGFGGPDDGFVPVFDSGPD 662
Score = 48.3 bits (115), Expect = 7e-06
Identities = 37/181 (20%), Positives = 56/181 (30%), Gaps = 6/181 (3%)
Query: 120 PGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPG 175
AP P+ PG +A + + +A P +A
Sbjct: 362 VTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAAT 421
Query: 176 PSSAPDL-PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
+ AP P P + D ++ D P P+ A S D D G +SAP
Sbjct: 422 RAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPAD-SGSASAP 480
Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
P A P P +A +A +A +A P P + P P +
Sbjct: 481 ASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAA 540
Query: 295 S 295
+
Sbjct: 541 A 541
Score = 46.0 bits (109), Expect = 3e-05
Identities = 60/277 (21%), Positives = 88/277 (31%), Gaps = 27/277 (9%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
+ T P P P + D ++ D P P+ A S D D G
Sbjct: 417 AAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPAD-SG 475
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
+SAP P A P P +A +A +A S D P ++
Sbjct: 476 SASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAA------SREDAPAAAAP-- 527
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
P P + P P ++ G ++A + S ++ P P++AP
Sbjct: 528 -PAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAA-PAAAP 585
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
P A +P P + +A P D+P PD P
Sbjct: 586 KPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPPWEDIP-----PDDYVPL 640
Query: 250 SAPDLPGPSSAPDLPGPSSAPD----LPGPSSAPDLP 282
SA + G +P S PD P P+ AP P
Sbjct: 641 SADEGFGGPDDGFVPVFDSGPDDVRVAPKPADAPAPP 677
Score = 39.8 bits (93), Expect = 0.003
Identities = 36/178 (20%), Positives = 53/178 (29%), Gaps = 6/178 (3%)
Query: 147 PGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPG 202
AP P+ PG +A + + +A P +A
Sbjct: 362 VTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAAT 421
Query: 203 PSSAPDL-PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
+ AP P P + D ++ D P P+ A S D D G +SAP
Sbjct: 422 RAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPAD-SGSASAP 480
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPA 319
P A P P +A +A + A +P+ P PA
Sbjct: 481 ASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPA 538
Score = 36.8 bits (85), Expect = 0.022
Identities = 46/219 (21%), Positives = 68/219 (31%), Gaps = 17/219 (7%)
Query: 12 EADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 71
E D P + P P A P P +A +A +A +A
Sbjct: 465 ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAA 524
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSS 124
P P + P P ++ G ++A + S ++ P P++
Sbjct: 525 AAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAA-PAA 583
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
AP P A +P P + +A P D+P PD
Sbjct: 584 APKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPPWEDIP-----PDDYV 638
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPD----LPGPSSAPDLP 219
P SA + G +P S PD P P+ AP P
Sbjct: 639 PLSADEGFGGPDDGFVPVFDSGPDDVRVAPKPADAPAPP 677
Score = 28.7 bits (64), Expect = 7.6
Identities = 39/193 (20%), Positives = 61/193 (31%), Gaps = 20/193 (10%)
Query: 11 TEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 70
A + + P +S D P ++ P P + P P ++ G ++
Sbjct: 494 PRAAAPSAATPAAVPDARAPAAASREDAPAAAAP---PAPEARPPTPAAAAPAARAGGAA 550
Query: 71 A-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 123
A + S ++ P P++AP P A +P P +
Sbjct: 551 AALDVLRNAGMRVSSDRGARAAAAAKPAAA-PAAAPKPAAPRVAVQVPTPRARAATGDAP 609
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD-- 181
+A P D+P PD P SA + G +P S PD
Sbjct: 610 PNGAARAEQAAESRGAPPPWEDIP-----PDDYVPLSADEGFGGPDDGFVPVFDSGPDDV 664
Query: 182 --LPGPSSAPDLP 192
P P+ AP P
Sbjct: 665 RVAPKPADAPAPP 677
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 52.9 bits (127), Expect = 2e-07
Identities = 44/208 (21%), Positives = 57/208 (27%), Gaps = 20/208 (9%)
Query: 104 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAP 162
PS+ P P A P PG GP + PG LP + P
Sbjct: 90 PSAGEPAPPPPHARRTSEPELPR--PGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGP 221
P + P ++P P D + P+
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQR 207
Query: 222 SSAPDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 274
D P P D P P PG PGP D P P PG
Sbjct: 208 RRDYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPG 262
Query: 275 PSSAPDLPGPSSAPDLPGPSSTVLGSYL 302
P +A P+ AP P++ + Y
Sbjct: 263 PLAA----QPAPAPGPGEPTARLNPKYT 286
Score = 52.1 bits (125), Expect = 4e-07
Identities = 43/201 (21%), Positives = 55/201 (27%), Gaps = 20/201 (9%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAP 90
PS+ P P A P PG GP + PG LP + P
Sbjct: 90 PSAGEPAPPPPHARRTSEPELPR--PGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGP 149
P + P ++P P D + P+
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQR 207
Query: 150 SSAPDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 202
D P P D P P PG PGP D P P PG
Sbjct: 208 RRDYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPG 262
Query: 203 PSSAPDLPGPSSAPDLPGPSS 223
P +A P+ AP P++
Sbjct: 263 PLAA----QPAPAPGPGEPTA 279
Score = 52.1 bits (125), Expect = 4e-07
Identities = 43/201 (21%), Positives = 55/201 (27%), Gaps = 20/201 (9%)
Query: 41 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAP 99
PS+ P P A P PG GP + PG LP + P
Sbjct: 90 PSAGEPAPPPPHARRTSEPELPR--PGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGP 158
P + P ++P P D + P+
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQR 207
Query: 159 SSAPDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 211
D P P D P P PG PGP D P P PG
Sbjct: 208 RRDYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPG 262
Query: 212 PSSAPDLPGPSSAPDLPGPSS 232
P +A P+ AP P++
Sbjct: 263 PLAA----QPAPAPGPGEPTA 279
Score = 52.1 bits (125), Expect = 4e-07
Identities = 43/201 (21%), Positives = 55/201 (27%), Gaps = 20/201 (9%)
Query: 50 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAP 108
PS+ P P A P PG GP + PG LP + P
Sbjct: 90 PSAGEPAPPPPHARRTSEPELPR--PGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147
Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGP 167
P + P ++P P D + P+
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQR 207
Query: 168 SSAPDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 220
D P P D P P PG PGP D P P PG
Sbjct: 208 RRDYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPG 262
Query: 221 PSSAPDLPGPSSAPDLPGPSS 241
P +A P+ AP P++
Sbjct: 263 PLAA----QPAPAPGPGEPTA 279
Score = 52.1 bits (125), Expect = 4e-07
Identities = 43/201 (21%), Positives = 55/201 (27%), Gaps = 20/201 (9%)
Query: 59 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAP 117
PS+ P P A P PG GP + PG LP + P
Sbjct: 90 PSAGEPAPPPPHARRTSEPELPR--PGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147
Query: 118 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGP 176
P + P ++P P D + P+
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQR 207
Query: 177 SSAPDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 229
D P P D P P PG PGP D P P PG
Sbjct: 208 RRDYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPG 262
Query: 230 PSSAPDLPGPSSAPDLPGPSS 250
P +A P+ AP P++
Sbjct: 263 PLAA----QPAPAPGPGEPTA 279
Score = 52.1 bits (125), Expect = 4e-07
Identities = 43/201 (21%), Positives = 55/201 (27%), Gaps = 20/201 (9%)
Query: 68 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAP 126
PS+ P P A P PG GP + PG LP + P
Sbjct: 90 PSAGEPAPPPPHARRTSEPELPR--PGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGP 185
P + P ++P P D + P+
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQR 207
Query: 186 SSAPDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 238
D P P D P P PG PGP D P P PG
Sbjct: 208 RRDYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPG 262
Query: 239 PSSAPDLPGPSSAPDLPGPSS 259
P +A P+ AP P++
Sbjct: 263 PLAA----QPAPAPGPGEPTA 279
Score = 52.1 bits (125), Expect = 4e-07
Identities = 43/201 (21%), Positives = 55/201 (27%), Gaps = 20/201 (9%)
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAP 135
PS+ P P A P PG GP + PG LP + P
Sbjct: 90 PSAGEPAPPPPHARRTSEPELPR--PGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGP 194
P + P ++P P D + P+
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQR 207
Query: 195 SSAPDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 247
D P P D P P PG PGP D P P PG
Sbjct: 208 RRDYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPG 262
Query: 248 PSSAPDLPGPSSAPDLPGPSS 268
P +A P+ AP P++
Sbjct: 263 PLAA----QPAPAPGPGEPTA 279
Score = 52.1 bits (125), Expect = 4e-07
Identities = 43/201 (21%), Positives = 55/201 (27%), Gaps = 20/201 (9%)
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAP 144
PS+ P P A P PG GP + PG LP + P
Sbjct: 90 PSAGEPAPPPPHARRTSEPELPR--PGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGP 203
P + P ++P P D + P+
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQR 207
Query: 204 SSAPDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 256
D P P D P P PG PGP D P P PG
Sbjct: 208 RRDYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPG 262
Query: 257 PSSAPDLPGPSSAPDLPGPSS 277
P +A P+ AP P++
Sbjct: 263 PLAA----QPAPAPGPGEPTA 279
Score = 52.1 bits (125), Expect = 4e-07
Identities = 43/201 (21%), Positives = 55/201 (27%), Gaps = 20/201 (9%)
Query: 95 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAP 153
PS+ P P A P PG GP + PG LP + P
Sbjct: 90 PSAGEPAPPPPHARRTSEPELPR--PGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147
Query: 154 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGP 212
P + P ++P P D + P+
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQR 207
Query: 213 SSAPDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 265
D P P D P P PG PGP D P P PG
Sbjct: 208 RRDYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPG 262
Query: 266 PSSAPDLPGPSSAPDLPGPSS 286
P +A P+ AP P++
Sbjct: 263 PLAA----QPAPAPGPGEPTA 279
Score = 51.7 bits (124), Expect = 5e-07
Identities = 43/202 (21%), Positives = 59/202 (29%), Gaps = 20/202 (9%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSA 80
++P P+ P +S P+LP G GP + PG LP +
Sbjct: 87 TVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAY 146
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPG 139
P P + P ++P P D + P+
Sbjct: 147 PAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQ 206
Query: 140 PSSAPDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLP 192
D P P D P P PG PGP D P P P
Sbjct: 207 RRRDYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAP 261
Query: 193 GPSSAPDLPGPSSAPDLPGPSS 214
GP +A P+ AP P++
Sbjct: 262 GPLAA----QPAPAPGPGEPTA 279
Score = 49.8 bits (119), Expect = 2e-06
Identities = 42/199 (21%), Positives = 56/199 (28%), Gaps = 20/199 (10%)
Query: 18 STVTERPLEPDLPGPSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDL 74
+ E P +S P+LP G GP + PG LP + P
Sbjct: 90 PSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAY 149
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGPSS 133
P + P ++P P D + P+
Sbjct: 150 QQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRR 209
Query: 134 APDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPGPS 186
D P P D P P PG PGP D P P PGP
Sbjct: 210 DYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPGPL 264
Query: 187 SAPDLPGPSSAPDLPGPSS 205
+A P+ AP P++
Sbjct: 265 AA----QPAPAPGPGEPTA 279
Score = 48.7 bits (116), Expect = 5e-06
Identities = 42/191 (21%), Positives = 54/191 (28%), Gaps = 20/191 (10%)
Query: 17 PSTVTERPLEPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPD 73
P R EP+LP G GP + PG LP + P
Sbjct: 98 PPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEPGA 157
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGPSSAPDLPGPS 132
P + P ++P P D + P+ D P P
Sbjct: 158 WPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPD 217
Query: 133 SAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
D P P PG PGP D P P PGP +A P
Sbjct: 218 WDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAA----QP 268
Query: 186 SSAPDLPGPSS 196
+ AP P++
Sbjct: 269 APAPGPGEPTA 279
Score = 37.1 bits (86), Expect = 0.016
Identities = 34/174 (19%), Positives = 49/174 (28%), Gaps = 19/174 (10%)
Query: 4 PFDKHVFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 63
P++ + AD P + + P + P P +
Sbjct: 117 PYEGYGGPRADDRPPGLPRQDQLPT--ARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGF 174
Query: 64 DLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGPSSAPDLPGPSSAP------DLPGPSSA 116
P ++P P D + P+ D P P D P P
Sbjct: 175 PPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPP-- 232
Query: 117 PDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
PG PGP D P P PGP +A P+ AP P++
Sbjct: 233 ---PGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAA----QPAPAPGPGEPTA 279
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 46.6 bits (111), Expect = 1e-05
Identities = 35/133 (26%), Positives = 41/133 (30%), Gaps = 2/133 (1%)
Query: 23 RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
P P D ++ D P D S++P P SS PS D
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPED 203
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
PS + P PSS P S PS P P P P + P P S
Sbjct: 204 PSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPS 263
Query: 143 APDLPGPSSAPDL 155
A P P L
Sbjct: 264 ASATPAPIGGITL 276
Score = 46.2 bits (110), Expect = 2e-05
Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)
Query: 36 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 95
P P D ++ D P D S++P P SS PS D P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207
Query: 96 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 155
S + P PSS P S PS P P P P + P P SA
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267
Query: 156 PGPSSAPDL 164
P P L
Sbjct: 268 PAPIGGITL 276
Score = 46.2 bits (110), Expect = 2e-05
Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)
Query: 45 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 104
P P D ++ D P D S++P P SS PS D P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207
Query: 105 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 164
S + P PSS P S PS P P P P + P P SA
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267
Query: 165 PGPSSAPDL 173
P P L
Sbjct: 268 PAPIGGITL 276
Score = 46.2 bits (110), Expect = 2e-05
Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)
Query: 54 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 113
P P D ++ D P D S++P P SS PS D P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207
Query: 114 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 173
S + P PSS P S PS P P P P + P P SA
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267
Query: 174 PGPSSAPDL 182
P P L
Sbjct: 268 PAPIGGITL 276
Score = 46.2 bits (110), Expect = 2e-05
Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)
Query: 63 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 122
P P D ++ D P D S++P P SS PS D P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
S + P PSS P S PS P P P P + P P SA
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267
Query: 183 PGPSSAPDL 191
P P L
Sbjct: 268 PAPIGGITL 276
Score = 46.2 bits (110), Expect = 2e-05
Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
P P D ++ D P D S++P P SS PS D P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207
Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
S + P PSS P S PS P P P P + P P SA
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267
Query: 192 PGPSSAPDL 200
P P L
Sbjct: 268 PAPIGGITL 276
Score = 46.2 bits (110), Expect = 2e-05
Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
P P D ++ D P D S++P P SS PS D P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
S + P PSS P S PS P P P P + P P SA
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267
Query: 201 PGPSSAPDL 209
P P L
Sbjct: 268 PAPIGGITL 276
Score = 46.2 bits (110), Expect = 2e-05
Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
P P D ++ D P D S++P P SS PS D P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207
Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
S + P PSS P S PS P P P P + P P SA
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267
Query: 210 PGPSSAPDL 218
P P L
Sbjct: 268 PAPIGGITL 276
Score = 46.2 bits (110), Expect = 2e-05
Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 158
P P D ++ D P D S++P P SS PS D P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207
Query: 159 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
S + P PSS P S PS P P P P + P P SA
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267
Query: 219 PGPSSAPDL 227
P P L
Sbjct: 268 PAPIGGITL 276
Score = 46.2 bits (110), Expect = 2e-05
Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)
Query: 108 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 167
P P D ++ D P D S++P P SS PS D P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207
Query: 168 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 227
S + P PSS P S PS P P P P + P P SA
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267
Query: 228 PGPSSAPDL 236
P P L
Sbjct: 268 PAPIGGITL 276
Score = 46.2 bits (110), Expect = 2e-05
Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
P P D ++ D P D S++P P SS PS D P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207
Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
S + P PSS P S PS P P P P + P P SA
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267
Query: 237 PGPSSAPDL 245
P P L
Sbjct: 268 PAPIGGITL 276
Score = 46.2 bits (110), Expect = 2e-05
Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
P P D ++ D P D S++P P SS PS D P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
S + P PSS P S PS P P P P + P P SA
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267
Query: 246 PGPSSAPDL 254
P P L
Sbjct: 268 PAPIGGITL 276
Score = 46.2 bits (110), Expect = 2e-05
Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
P P D ++ D P D S++P P SS PS D P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207
Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
S + P PSS P S PS P P P P + P P SA
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267
Query: 255 PGPSSAPDL 263
P P L
Sbjct: 268 PAPIGGITL 276
Score = 46.2 bits (110), Expect = 2e-05
Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
P P D ++ D P D S++P P SS PS D P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
S + P PSS P S PS P P P P + P P SA
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267
Query: 264 PGPSSAPDL 272
P P L
Sbjct: 268 PAPIGGITL 276
Score = 46.2 bits (110), Expect = 2e-05
Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
P P D ++ D P D S++P P SS PS D P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
S + P PSS P S PS P P P P + P P SA
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267
Query: 273 PGPSSAPDL 281
P P L
Sbjct: 268 PAPIGGITL 276
Score = 46.2 bits (110), Expect = 2e-05
Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)
Query: 162 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 221
P P D ++ D P D S++P P SS PS D P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207
Query: 222 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
S + P PSS P S PS P P P P + P P SA
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267
Query: 282 PGPSSAPDL 290
P P L
Sbjct: 268 PAPIGGITL 276
Score = 45.8 bits (109), Expect = 2e-05
Identities = 34/128 (26%), Positives = 41/128 (32%), Gaps = 2/128 (1%)
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
P P D ++ D P D S++P P SS PS D P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207
Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
S + P PSS P S PS P P P P + P P SA
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267
Query: 291 PGPSSTVL 298
P P +
Sbjct: 268 PAPIGGIT 275
Score = 43.9 bits (104), Expect = 1e-04
Identities = 33/143 (23%), Positives = 41/143 (28%), Gaps = 10/143 (6%)
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
P P D ++ D P D S++P P SS PS D P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLG 299
S + P PSS P S PS P P P P + P P S
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASA- 266
Query: 300 SYLGEAGHQKSPKGLEPKPAQIS 322
G+ I+
Sbjct: 267 -------TPAPIGGITLDDDAIA 282
Score = 43.9 bits (104), Expect = 1e-04
Identities = 34/118 (28%), Positives = 44/118 (37%), Gaps = 1/118 (0%)
Query: 12 EADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSS 70
E + +T ++ + P+SA PSS+P +P S P+ P S LP PSS
Sbjct: 159 EDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSS 218
Query: 71 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 128
P S PS P P P P + P P SA P P L
Sbjct: 219 FQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITL 276
Score = 41.2 bits (97), Expect = 7e-04
Identities = 31/116 (26%), Positives = 33/116 (28%), Gaps = 2/116 (1%)
Query: 22 ERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
D P D S + P P P P P SS P P PSS
Sbjct: 163 VATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLP--PAPSSFQ 220
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 137
P S PS P P P P + P P SA P P L
Sbjct: 221 SDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITL 276
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 45.1 bits (106), Expect = 8e-05
Identities = 70/312 (22%), Positives = 93/312 (29%), Gaps = 13/312 (4%)
Query: 36 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 95
P P +S P+ + P S P P GP P
Sbjct: 243 PLQPQTASQQSPQPPAPSSRHPQSSHHGPGP-PMPHALQQGPVFLQHPSSNPPQPFGLAQ 301
Query: 96 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 155
S P LP PS A + P P AP +P P P P
Sbjct: 302 SQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPN-- 359
Query: 156 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 215
P L GPS P +P P P S+ P SA P P S
Sbjct: 360 QSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVP 419
Query: 216 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----------GPSSAPDLPGPSSAPDLPG 265
P + + LP +S G S P G + P ++
Sbjct: 420 AQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAP 479
Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPAQISFVL 325
P ++ P SA G + P P P + L EA +SP P+ V+
Sbjct: 480 PRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPSPEPTVV 539
Query: 326 NIFANFHQTLRF 337
N ++ Q+ RF
Sbjct: 540 NTPSHASQSARF 551
Score = 42.0 bits (98), Expect = 6e-04
Identities = 60/253 (23%), Positives = 75/253 (29%), Gaps = 6/253 (2%)
Query: 27 PDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
L PSS P P S P LP PS A + P P AP +
Sbjct: 284 VFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSM 343
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
P P P P P L GPS P +P P P S+ P SA
Sbjct: 344 PHIKPPPTTPIPQLPN--QSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSA 401
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG- 202
P P S P + + LP +S G S P + P G
Sbjct: 402 HPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGG 461
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
+ P ++ P ++ P SA G + P P P A +
Sbjct: 462 LPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEE 521
Query: 263 LPGPSSAPDLPGP 275
P P P P
Sbjct: 522 PESPPPPPRSPSP 534
Score = 40.4 bits (94), Expect = 0.002
Identities = 68/274 (24%), Positives = 82/274 (29%), Gaps = 13/274 (4%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGP 86
PS+ P P + P P +A P P L PS P P P
Sbjct: 189 LAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQT 248
Query: 87 SSAPDLPGPSSAPDLPGPS-SAPDLPGPS----SAPDLPGPSSAPDLP---GPSSAPDLP 138
+S P+ + P S P P P L PSS P P S P LP
Sbjct: 249 ASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLP 308
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
PS A + P P AP +P P P P P
Sbjct: 309 LPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPN--QSHKHPP 366
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
L GPS P +P P P S+ P SA P P S P +
Sbjct: 367 HLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLT 426
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
+ LP +S G S P + P G
Sbjct: 427 QSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSG 460
Score = 40.1 bits (93), Expect = 0.003
Identities = 67/274 (24%), Positives = 79/274 (28%), Gaps = 8/274 (2%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAP 81
P PG + AP P P+ + P +P P+ P P P S P P P
Sbjct: 179 PSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLP 238
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-- 138
P S P P GP L PSS P P
Sbjct: 239 SPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFG 298
Query: 139 -GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
S P LP PS A + P P AP +P P P P
Sbjct: 299 LAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLP 358
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
P L GPS P +P P P S+ P SA P P
Sbjct: 359 N--QSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQ 416
Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
S P + + LP +S G S P
Sbjct: 417 SVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQS 450
Score = 38.5 bits (89), Expect = 0.007
Identities = 66/271 (24%), Positives = 81/271 (29%), Gaps = 8/271 (2%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P + D SS+P +P P S+ L P P + P A PS+ P
Sbjct: 140 PKDIDQDNRSSSPSIPSPQDNESDSDSSAQQQLLQPQGPPSIQVPPGAA--LAPSAPPPT 197
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
P + P P +A P P L PS P P P +S P
Sbjct: 198 PSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPP 257
Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ + P S P P GP P S P LP PS A
Sbjct: 258 APSSRHPQSSHHGPGP-PMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPH 316
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
+ P P AP +P P P P P L GPS
Sbjct: 317 SHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPN--QSHKHPPHLQGPSPF 374
Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
P +P P P S+ P SA P
Sbjct: 375 PQMPSNLPPPPALKPLSSLPTHHPPSAHPPP 405
Score = 36.6 bits (84), Expect = 0.026
Identities = 46/201 (22%), Positives = 60/201 (29%), Gaps = 1/201 (0%)
Query: 22 ERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
E+PL P P P P P L GPS P +P P P S+
Sbjct: 334 EQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSL 393
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
P SA P P S P + + LP +S G S P +
Sbjct: 394 PTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFA 453
Query: 142 SAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
P G + P ++ P ++ P SA G + P P P
Sbjct: 454 QHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKE 513
Query: 201 PGPSSAPDLPGPSSAPDLPGP 221
A + P P P P
Sbjct: 514 EPLDEAEEPESPPPPPRSPSP 534
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 43.2 bits (102), Expect = 2e-04
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 91
P++A + P+ P +A P + +A P++A P A
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 147
P P +AP P++AP P++ L A P + P P +SA P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479
Query: 148 GPSSAPDLPGPSSAPDL 164
+ A P+ D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496
Score = 43.2 bits (102), Expect = 2e-04
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)
Query: 41 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 100
P++A + P+ P +A P + +A P++A P A
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 156
P P +AP P++AP P++ L A P + P P +SA P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479
Query: 157 GPSSAPDLPGPSSAPDL 173
+ A P+ D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496
Score = 43.2 bits (102), Expect = 2e-04
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)
Query: 50 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 109
P++A + P+ P +A P + +A P++A P A
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 165
P P +AP P++AP P++ L A P + P P +SA P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479
Query: 166 GPSSAPDLPGPSSAPDL 182
+ A P+ D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496
Score = 43.2 bits (102), Expect = 2e-04
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)
Query: 59 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 118
P++A + P+ P +A P + +A P++A P A
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 174
P P +AP P++AP P++ L A P + P P +SA P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479
Query: 175 GPSSAPDLPGPSSAPDL 191
+ A P+ D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496
Score = 43.2 bits (102), Expect = 2e-04
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)
Query: 68 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 127
P++A + P+ P +A P + +A P++A P A
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 183
P P +AP P++AP P++ L A P + P P +SA P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479
Query: 184 GPSSAPDLPGPSSAPDL 200
+ A P+ D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496
Score = 43.2 bits (102), Expect = 2e-04
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
P++A + P+ P +A P + +A P++A P A
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 192
P P +AP P++AP P++ L A P + P P +SA P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479
Query: 193 GPSSAPDLPGPSSAPDL 209
+ A P+ D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496
Score = 43.2 bits (102), Expect = 2e-04
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P++A + P+ P +A P + +A P++A P A
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 201
P P +AP P++AP P++ L A P + P P +SA P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479
Query: 202 GPSSAPDLPGPSSAPDL 218
+ A P+ D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496
Score = 43.2 bits (102), Expect = 2e-04
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)
Query: 95 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 154
P++A + P+ P +A P + +A P++A P A
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421
Query: 155 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 210
P P +AP P++AP P++ L A P + P P +SA P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479
Query: 211 GPSSAPDLPGPSSAPDL 227
+ A P+ D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496
Score = 43.2 bits (102), Expect = 2e-04
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)
Query: 104 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 163
P++A + P+ P +A P + +A P++A P A
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421
Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 219
P P +AP P++AP P++ L A P + P P +SA P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479
Query: 220 GPSSAPDLPGPSSAPDL 236
+ A P+ D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496
Score = 43.2 bits (102), Expect = 2e-04
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)
Query: 113 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 172
P++A + P+ P +A P + +A P++A P A
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 228
P P +AP P++AP P++ L A P + P P +SA P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479
Query: 229 GPSSAPDLPGPSSAPDL 245
+ A P+ D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496
Score = 43.2 bits (102), Expect = 2e-04
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
P++A + P+ P +A P + +A P++A P A
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 237
P P +AP P++AP P++ L A P + P P +SA P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479
Query: 238 GPSSAPDLPGPSSAPDL 254
+ A P+ D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496
Score = 43.2 bits (102), Expect = 2e-04
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
P++A + P+ P +A P + +A P++A P A
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 246
P P +AP P++AP P++ L A P + P P +SA P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479
Query: 247 GPSSAPDLPGPSSAPDL 263
+ A P+ D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496
Score = 43.2 bits (102), Expect = 2e-04
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
P++A + P+ P +A P + +A P++A P A
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 255
P P +AP P++AP P++ L A P + P P +SA P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479
Query: 256 GPSSAPDLPGPSSAPDL 272
+ A P+ D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496
Score = 43.2 bits (102), Expect = 2e-04
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
P++A + P+ P +A P + +A P++A P A
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 264
P P +AP P++AP P++ L A P + P P +SA P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479
Query: 265 GPSSAPDLPGPSSAPDL 281
+ A P+ D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496
Score = 42.4 bits (100), Expect = 4e-04
Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 10/133 (7%)
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 226
P++A + P+ P +A P + +A P++A P A
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421
Query: 227 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 282
P P +AP P++AP P++ L A P + P P +SA P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479
Query: 283 GPSSAPDLPGPSS 295
+ A P+
Sbjct: 480 AAAPAAARLTPTE 492
Score = 39.7 bits (93), Expect = 0.003
Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 6/129 (4%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 72
A+ + P P+ P++AP ++ P++A P A P P +AP
Sbjct: 370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAP 429
Query: 73 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLPGPSSAPDL 128
P++AP P++ L A P + P P +SA P + A
Sbjct: 430 AAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAAR 487
Query: 129 PGPSSAPDL 137
P+ D+
Sbjct: 488 LTPTEEGDV 496
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein.
Length = 753
Score = 40.9 bits (96), Expect = 0.001
Identities = 27/132 (20%), Positives = 33/132 (25%), Gaps = 6/132 (4%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
G ++ ++ P PD A P P P P S
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVP-----GPVPVGMPAHTARPSRV 677
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 159
P AP P P P G P +A P SS P
Sbjct: 678 ARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPA-AAGPAPCGSSLIASPTAP 736
Query: 160 SAPDLPGPSSAP 171
P+ PG A
Sbjct: 737 PEPEPPGAEQAD 748
Score = 40.9 bits (96), Expect = 0.001
Identities = 27/132 (20%), Positives = 33/132 (25%), Gaps = 6/132 (4%)
Query: 58 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 117
G ++ ++ P PD A P P P P S
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVP-----GPVPVGMPAHTARPSRV 677
Query: 118 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 177
P AP P P P G P +A P SS P
Sbjct: 678 ARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPA-AAGPAPCGSSLIASPTAP 736
Query: 178 SAPDLPGPSSAP 189
P+ PG A
Sbjct: 737 PEPEPPGAEQAD 748
Score = 40.9 bits (96), Expect = 0.001
Identities = 27/132 (20%), Positives = 33/132 (25%), Gaps = 6/132 (4%)
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
G ++ ++ P PD A P P P P S
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVP-----GPVPVGMPAHTARPSRV 677
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
P AP P P P G P +A P SS P
Sbjct: 678 ARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPA-AAGPAPCGSSLIASPTAP 736
Query: 196 SAPDLPGPSSAP 207
P+ PG A
Sbjct: 737 PEPEPPGAEQAD 748
Score = 40.9 bits (96), Expect = 0.001
Identities = 27/132 (20%), Positives = 33/132 (25%), Gaps = 6/132 (4%)
Query: 94 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 153
G ++ ++ P PD A P P P P S
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVP-----GPVPVGMPAHTARPSRV 677
Query: 154 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 213
P AP P P P G P +A P SS P
Sbjct: 678 ARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPA-AAGPAPCGSSLIASPTAP 736
Query: 214 SAPDLPGPSSAP 225
P+ PG A
Sbjct: 737 PEPEPPGAEQAD 748
Score = 40.9 bits (96), Expect = 0.001
Identities = 27/132 (20%), Positives = 33/132 (25%), Gaps = 6/132 (4%)
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
G ++ ++ P PD A P P P P S
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVP-----GPVPVGMPAHTARPSRV 677
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
P AP P P P G P +A P SS P
Sbjct: 678 ARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPA-AAGPAPCGSSLIASPTAP 736
Query: 232 SAPDLPGPSSAP 243
P+ PG A
Sbjct: 737 PEPEPPGAEQAD 748
Score = 40.9 bits (96), Expect = 0.001
Identities = 27/132 (20%), Positives = 33/132 (25%), Gaps = 6/132 (4%)
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
G ++ ++ P PD A P P P P S
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVP-----GPVPVGMPAHTARPSRV 677
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
P AP P P P G P +A P SS P
Sbjct: 678 ARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPA-AAGPAPCGSSLIASPTAP 736
Query: 250 SAPDLPGPSSAP 261
P+ PG A
Sbjct: 737 PEPEPPGAEQAD 748
Score = 40.9 bits (96), Expect = 0.001
Identities = 27/132 (20%), Positives = 33/132 (25%), Gaps = 6/132 (4%)
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
G ++ ++ P PD A P P P P S
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVP-----GPVPVGMPAHTARPSRV 677
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
P AP P P P G P +A P SS P
Sbjct: 678 ARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPA-AAGPAPCGSSLIASPTAP 736
Query: 268 SAPDLPGPSSAP 279
P+ PG A
Sbjct: 737 PEPEPPGAEQAD 748
Score = 40.9 bits (96), Expect = 0.001
Identities = 27/132 (20%), Positives = 33/132 (25%), Gaps = 6/132 (4%)
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
G ++ ++ P PD A P P P P S
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVP-----GPVPVGMPAHTARPSRV 677
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 276
P AP P P P G P + A P SS P
Sbjct: 678 ARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAA-AGPAPCGSSLIASPTAP 736
Query: 277 SAPDLPGPSSAP 288
P+ PG A
Sbjct: 737 PEPEPPGAEQAD 748
Score = 40.2 bits (94), Expect = 0.002
Identities = 26/127 (20%), Positives = 32/127 (25%), Gaps = 5/127 (3%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGP 86
G ++ ++ P PD A P P P S P
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDP 682
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
AP P P P G P +A P SS P P+
Sbjct: 683 VRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPA-AAGPAPCGSSLIASPTAPPEPEP 741
Query: 147 PGPSSAP 153
PG A
Sbjct: 742 PGAEQAD 748
Score = 39.8 bits (93), Expect = 0.003
Identities = 26/131 (19%), Positives = 32/131 (24%), Gaps = 6/131 (4%)
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
G ++ ++ P PD A P P P P S
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVP-----GPVPVGMPAHTARPSRV 677
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
P AP P P P G P +A P SS P
Sbjct: 678 ARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPA-AAGPAPCGSSLIASPTAP 736
Query: 286 SAPDLPGPSST 296
P+ PG
Sbjct: 737 PEPEPPGAEQA 747
Score = 31.3 bits (71), Expect = 1.2
Identities = 16/65 (24%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
P+ P P P P G P +A P SS P P+ PG
Sbjct: 685 PTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPA-AAGPAPCGSSLIASPTAPPEPEPPG 743
Query: 77 PSSAP 81
A
Sbjct: 744 AEQAD 748
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 40.0 bits (93), Expect = 0.002
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 97
S GP+S P+ P G + A + S+AP P PS+AP P
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 149
AP P S P P AP +P S P P +SA D P P
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487
Score = 40.0 bits (93), Expect = 0.002
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 49 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 106
S GP+S P+ P G + A + S+AP P PS+AP P
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 158
AP P S P P AP +P S P P +SA D P P
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487
Score = 40.0 bits (93), Expect = 0.002
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 58 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 115
S GP+S P+ P G + A + S+AP P PS+AP P
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 167
AP P S P P AP +P S P P +SA D P P
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487
Score = 40.0 bits (93), Expect = 0.002
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 124
S GP+S P+ P G + A + S+AP P PS+AP P
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 176
AP P S P P AP +P S P P +SA D P P
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487
Score = 40.0 bits (93), Expect = 0.002
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 133
S GP+S P+ P G + A + S+AP P PS+AP P
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 185
AP P S P P AP +P S P P +SA D P P
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487
Score = 40.0 bits (93), Expect = 0.002
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 142
S GP+S P+ P G + A + S+AP P PS+AP P
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 194
AP P S P P AP +P S P P +SA D P P
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487
Score = 40.0 bits (93), Expect = 0.002
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 94 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 151
S GP+S P+ P G + A + S+AP P PS+AP P
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 203
AP P S P P AP +P S P P +SA D P P
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487
Score = 40.0 bits (93), Expect = 0.002
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 160
S GP+S P+ P G + A + S+AP P PS+AP P
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 161 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 212
AP P S P P AP +P S P P +SA D P P
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487
Score = 40.0 bits (93), Expect = 0.002
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 169
S GP+S P+ P G + A + S+AP P PS+AP P
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 221
AP P S P P AP +P S P P +SA D P P
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487
Score = 40.0 bits (93), Expect = 0.002
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 178
S GP+S P+ P G + A + S+AP P PS+AP P
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 230
AP P S P P AP +P S P P +SA D P P
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487
Score = 40.0 bits (93), Expect = 0.002
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 187
S GP+S P+ P G + A + S+AP P PS+AP P
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 239
AP P S P P AP +P S P P +SA D P P
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487
Score = 40.0 bits (93), Expect = 0.002
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 196
S GP+S P+ P G + A + S+AP P PS+AP P
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 197 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 248
AP P S P P AP +P S P P +SA D P P
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487
Score = 40.0 bits (93), Expect = 0.002
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 205
S GP+S P+ P G + A + S+AP P PS+AP P
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 257
AP P S P P AP +P S P P +SA D P P
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487
Score = 40.0 bits (93), Expect = 0.002
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 214
S GP+S P+ P G + A + S+AP P PS+AP P
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 215 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 266
AP P S P P AP +P S P P +SA D P P
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487
Score = 40.0 bits (93), Expect = 0.002
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 223
S GP+S P+ P G + A + S+AP P PS+AP P
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 224 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 275
AP P S P P AP +P S P P +SA D P P
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487
Score = 40.0 bits (93), Expect = 0.002
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 232
S GP+S P+ P G + A + S+AP P PS+AP P
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 284
AP P S P P AP +P S P P +SA D P P
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487
Score = 40.0 bits (93), Expect = 0.002
Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 241
S GP+S P+ P G + A + S+AP P PS+AP P
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 293
AP P S P P AP +P S P P +SA D P P
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487
Score = 34.7 bits (79), Expect = 0.12
Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 259
S GP+S P+ P G + A + S+AP P PS+AP P
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 260 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGS 300
AP P S P P AP +P S P P ++ +
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDA 475
Score = 33.9 bits (77), Expect = 0.18
Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 250
S GP+S P+ P G + A + S+AP P PS+AP P
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438
Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
AP P S P P AP +P S P P ++ P+
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPT 478
Score = 28.9 bits (64), Expect = 5.9
Identities = 18/70 (25%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Query: 18 STVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPG 76
S P P P D P+ P AP +P S P P +SA D P
Sbjct: 418 SAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPP 477
Query: 77 PSSAPDLPGP 86
P
Sbjct: 478 TLGDPSDTAE 487
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 39.4 bits (92), Expect = 0.003
Identities = 29/136 (21%), Positives = 41/136 (30%), Gaps = 8/136 (5%)
Query: 10 FTEADYLPSTVTER--PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 67
F++ D+ T + PLE + P + P PS P PS+ P
Sbjct: 334 FSQLDFQLRTTSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAA 393
Query: 68 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 127
++ P P P P + P P SAP L ++ P P P
Sbjct: 394 AANIPPKEPVRETATPPPVP-----PRPVAPPVPHTPESAPKLT-RAAIPVDEKPKYTPP 447
Query: 128 LPGPSSAPDLPGPSSA 143
P L
Sbjct: 448 APPKEEEKALIADGDV 463
Score = 38.3 bits (89), Expect = 0.008
Identities = 23/109 (21%), Positives = 30/109 (27%), Gaps = 6/109 (5%)
Query: 62 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 121
P + P PS P PS+ P ++ P P P
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP-----PR 415
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
P + P P SAP L ++ P P P P L
Sbjct: 416 PVAPPVPHTPESAPKLT-RAAIPVDEKPKYTPPAPPKEEEKALIADGDV 463
Score = 38.3 bits (89), Expect = 0.008
Identities = 23/109 (21%), Positives = 30/109 (27%), Gaps = 6/109 (5%)
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
P + P PS P PS+ P ++ P P P
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP-----PR 415
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
P + P P SAP L ++ P P P P L
Sbjct: 416 PVAPPVPHTPESAPKLT-RAAIPVDEKPKYTPPAPPKEEEKALIADGDV 463
Score = 38.3 bits (89), Expect = 0.008
Identities = 23/109 (21%), Positives = 30/109 (27%), Gaps = 6/109 (5%)
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
P + P PS P PS+ P ++ P P P
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP-----PR 415
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
P + P P SAP L ++ P P P P L
Sbjct: 416 PVAPPVPHTPESAPKLT-RAAIPVDEKPKYTPPAPPKEEEKALIADGDV 463
Score = 38.3 bits (89), Expect = 0.008
Identities = 23/109 (21%), Positives = 30/109 (27%), Gaps = 6/109 (5%)
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
P + P PS P PS+ P ++ P P P
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP-----PR 415
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
P + P P SAP L ++ P P P P L
Sbjct: 416 PVAPPVPHTPESAPKLT-RAAIPVDEKPKYTPPAPPKEEEKALIADGDV 463
Score = 38.3 bits (89), Expect = 0.008
Identities = 23/109 (21%), Positives = 30/109 (27%), Gaps = 6/109 (5%)
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
P + P PS P PS+ P ++ P P P
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP-----PR 415
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 278
P + P P SAP L ++ P P P P L
Sbjct: 416 PVAPPVPHTPESAPKLT-RAAIPVDEKPKYTPPAPPKEEEKALIADGDV 463
Score = 37.9 bits (88), Expect = 0.010
Identities = 22/98 (22%), Positives = 29/98 (29%), Gaps = 6/98 (6%)
Query: 197 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
P + P PS P PS+ P ++ P P P
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP-----PR 415
Query: 257 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
P + P P SAP L ++ P P P P
Sbjct: 416 PVAPPVPHTPESAPKLT-RAAIPVDEKPKYTPPAPPKE 452
Score = 34.0 bits (78), Expect = 0.18
Identities = 13/73 (17%), Positives = 19/73 (26%)
Query: 224 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
P + P PS P PS+ P ++ P P P P
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPP 420
Query: 284 PSSAPDLPGPSST 296
P+ +
Sbjct: 421 VPHTPESAPKLTR 433
Score = 32.1 bits (73), Expect = 0.62
Identities = 27/105 (25%), Positives = 35/105 (33%), Gaps = 3/105 (2%)
Query: 48 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 107
P P+ P P + AP P+ AP P +A P P + P P P +
Sbjct: 362 PVPAPQPAKPTAA-APSPVRPTPAPSTR-PKAAAAANIPPKEPVRETATPPPVPPRPVAP 419
Query: 108 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
P P SAP L ++ P P P P L
Sbjct: 420 PVPHTPESAPKLT-RAAIPVDEKPKYTPPAPPKEEEKALIADGDV 463
Score = 32.1 bits (73), Expect = 0.62
Identities = 27/105 (25%), Positives = 35/105 (33%), Gaps = 3/105 (2%)
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
P P+ P P + AP P+ AP P +A P P + P P P +
Sbjct: 362 PVPAPQPAKPTAA-APSPVRPTPAPSTR-PKAAAAANIPPKEPVRETATPPPVPPRPVAP 419
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
P P SAP L ++ P P P P L
Sbjct: 420 PVPHTPESAPKLT-RAAIPVDEKPKYTPPAPPKEEEKALIADGDV 463
Score = 32.1 bits (73), Expect = 0.62
Identities = 27/105 (25%), Positives = 35/105 (33%), Gaps = 3/105 (2%)
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
P P+ P P + AP P+ AP P +A P P + P P P +
Sbjct: 362 PVPAPQPAKPTAA-APSPVRPTPAPSTR-PKAAAAANIPPKEPVRETATPPPVPPRPVAP 419
Query: 162 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
P P SAP L ++ P P P P L
Sbjct: 420 PVPHTPESAPKLT-RAAIPVDEKPKYTPPAPPKEEEKALIADGDV 463
Score = 32.1 bits (73), Expect = 0.62
Identities = 27/105 (25%), Positives = 35/105 (33%), Gaps = 3/105 (2%)
Query: 129 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
P P+ P P + AP P+ AP P +A P P + P P P +
Sbjct: 362 PVPAPQPAKPTAA-APSPVRPTPAPSTR-PKAAAAANIPPKEPVRETATPPPVPPRPVAP 419
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 233
P P SAP L ++ P P P P L
Sbjct: 420 PVPHTPESAPKLT-RAAIPVDEKPKYTPPAPPKEEEKALIADGDV 463
Score = 32.1 bits (73), Expect = 0.62
Identities = 27/105 (25%), Positives = 35/105 (33%), Gaps = 3/105 (2%)
Query: 156 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 215
P P+ P P + AP P+ AP P +A P P + P P P +
Sbjct: 362 PVPAPQPAKPTAA-APSPVRPTPAPSTR-PKAAAAANIPPKEPVRETATPPPVPPRPVAP 419
Query: 216 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
P P SAP L ++ P P P P L
Sbjct: 420 PVPHTPESAPKLT-RAAIPVDEKPKYTPPAPPKEEEKALIADGDV 463
Score = 32.1 bits (73), Expect = 0.62
Identities = 27/105 (25%), Positives = 35/105 (33%), Gaps = 3/105 (2%)
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
P P+ P P + AP P+ AP P +A P P + P P P +
Sbjct: 362 PVPAPQPAKPTAA-APSPVRPTPAPSTR-PKAAAAANIPPKEPVRETATPPPVPPRPVAP 419
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 287
P P SAP L ++ P P P P L
Sbjct: 420 PVPHTPESAPKLT-RAAIPVDEKPKYTPPAPPKEEEKALIADGDV 463
>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566). Family of
related proteins that is plant specific.
Length = 313
Score = 39.2 bits (91), Expect = 0.003
Identities = 34/152 (22%), Positives = 49/152 (32%), Gaps = 5/152 (3%)
Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 223
S+ G +S+P +SA P +AP P PSS+P SS
Sbjct: 1 RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASP-PSSSPARNTSSS 59
Query: 224 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
+ L + PS PS+A L G + G SS
Sbjct: 60 SSFGLSKQRPSSLSRGRLSSRFVSPSRG----SPSAAASLNGSLATASTSGSSSPSRSRR 115
Query: 284 PSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLE 315
+S+ G +VL +K P +E
Sbjct: 116 TTSSDLSSGNGPSVLSFMADVKRGKKGPSKIE 147
Score = 35.3 bits (81), Expect = 0.045
Identities = 29/129 (22%), Positives = 41/129 (31%), Gaps = 5/129 (3%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
S+ G +S+P +SA P +AP P PSS+P SS
Sbjct: 1 RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASP-PSSSPARNTSSS 59
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
+ L + PS PS+A L G + G SS
Sbjct: 60 SSFGLSKQRPSSLSRGRLSSRFVSPSRG----SPSAAASLNGSLATASTSGSSSPSRSRR 115
Query: 149 PSSAPDLPG 157
+S+ G
Sbjct: 116 TTSSDLSSG 124
Score = 35.3 bits (81), Expect = 0.045
Identities = 29/129 (22%), Positives = 41/129 (31%), Gaps = 5/129 (3%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 97
S+ G +S+P +SA P +AP P PSS+P SS
Sbjct: 1 RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASP-PSSSPARNTSSS 59
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
+ L + PS PS+A L G + G SS
Sbjct: 60 SSFGLSKQRPSSLSRGRLSSRFVSPSRG----SPSAAASLNGSLATASTSGSSSPSRSRR 115
Query: 158 PSSAPDLPG 166
+S+ G
Sbjct: 116 TTSSDLSSG 124
Score = 35.3 bits (81), Expect = 0.045
Identities = 29/129 (22%), Positives = 41/129 (31%), Gaps = 5/129 (3%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
S+ G +S+P +SA P +AP P PSS+P SS
Sbjct: 1 RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASP-PSSSPARNTSSS 59
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
+ L + PS PS+A L G + G SS
Sbjct: 60 SSFGLSKQRPSSLSRGRLSSRFVSPSRG----SPSAAASLNGSLATASTSGSSSPSRSRR 115
Query: 167 PSSAPDLPG 175
+S+ G
Sbjct: 116 TTSSDLSSG 124
Score = 35.3 bits (81), Expect = 0.045
Identities = 29/129 (22%), Positives = 41/129 (31%), Gaps = 5/129 (3%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
S+ G +S+P +SA P +AP P PSS+P SS
Sbjct: 1 RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASP-PSSSPARNTSSS 59
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
+ L + PS PS+A L G + G SS
Sbjct: 60 SSFGLSKQRPSSLSRGRLSSRFVSPSRG----SPSAAASLNGSLATASTSGSSSPSRSRR 115
Query: 176 PSSAPDLPG 184
+S+ G
Sbjct: 116 TTSSDLSSG 124
Score = 35.3 bits (81), Expect = 0.045
Identities = 29/129 (22%), Positives = 41/129 (31%), Gaps = 5/129 (3%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
S+ G +S+P +SA P +AP P PSS+P SS
Sbjct: 1 RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASP-PSSSPARNTSSS 59
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
+ L + PS PS+A L G + G SS
Sbjct: 60 SSFGLSKQRPSSLSRGRLSSRFVSPSRG----SPSAAASLNGSLATASTSGSSSPSRSRR 115
Query: 185 PSSAPDLPG 193
+S+ G
Sbjct: 116 TTSSDLSSG 124
Score = 35.3 bits (81), Expect = 0.045
Identities = 29/129 (22%), Positives = 41/129 (31%), Gaps = 5/129 (3%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
S+ G +S+P +SA P +AP P PSS+P SS
Sbjct: 1 RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASP-PSSSPARNTSSS 59
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
+ L + PS PS+A L G + G SS
Sbjct: 60 SSFGLSKQRPSSLSRGRLSSRFVSPSRG----SPSAAASLNGSLATASTSGSSSPSRSRR 115
Query: 194 PSSAPDLPG 202
+S+ G
Sbjct: 116 TTSSDLSSG 124
Score = 35.3 bits (81), Expect = 0.045
Identities = 29/129 (22%), Positives = 41/129 (31%), Gaps = 5/129 (3%)
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
S+ G +S+P +SA P +AP P PSS+P SS
Sbjct: 1 RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASP-PSSSPARNTSSS 59
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+ L + PS PS+A L G + G SS
Sbjct: 60 SSFGLSKQRPSSLSRGRLSSRFVSPSRG----SPSAAASLNGSLATASTSGSSSPSRSRR 115
Query: 203 PSSAPDLPG 211
+S+ G
Sbjct: 116 TTSSDLSSG 124
Score = 35.3 bits (81), Expect = 0.045
Identities = 29/129 (22%), Positives = 41/129 (31%), Gaps = 5/129 (3%)
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
S+ G +S+P +SA P +AP P PSS+P SS
Sbjct: 1 RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASP-PSSSPARNTSSS 59
Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
+ L + PS PS+A L G + G SS
Sbjct: 60 SSFGLSKQRPSSLSRGRLSSRFVSPSRG----SPSAAASLNGSLATASTSGSSSPSRSRR 115
Query: 212 PSSAPDLPG 220
+S+ G
Sbjct: 116 TTSSDLSSG 124
Score = 35.3 bits (81), Expect = 0.045
Identities = 29/129 (22%), Positives = 41/129 (31%), Gaps = 5/129 (3%)
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
S+ G +S+P +SA P +AP P PSS+P SS
Sbjct: 1 RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASP-PSSSPARNTSSS 59
Query: 161 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
+ L + PS PS+A L G + G SS
Sbjct: 60 SSFGLSKQRPSSLSRGRLSSRFVSPSRG----SPSAAASLNGSLATASTSGSSSPSRSRR 115
Query: 221 PSSAPDLPG 229
+S+ G
Sbjct: 116 TTSSDLSSG 124
Score = 35.3 bits (81), Expect = 0.045
Identities = 29/129 (22%), Positives = 41/129 (31%), Gaps = 5/129 (3%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
S+ G +S+P +SA P +AP P PSS+P SS
Sbjct: 1 RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASP-PSSSPARNTSSS 59
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
+ L + PS PS+A L G + G SS
Sbjct: 60 SSFGLSKQRPSSLSRGRLSSRFVSPSRG----SPSAAASLNGSLATASTSGSSSPSRSRR 115
Query: 230 PSSAPDLPG 238
+S+ G
Sbjct: 116 TTSSDLSSG 124
Score = 35.3 bits (81), Expect = 0.045
Identities = 29/129 (22%), Positives = 41/129 (31%), Gaps = 5/129 (3%)
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
S+ G +S+P +SA P +AP P PSS+P SS
Sbjct: 1 RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASP-PSSSPARNTSSS 59
Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
+ L + PS PS+A L G + G SS
Sbjct: 60 SSFGLSKQRPSSLSRGRLSSRFVSPSRG----SPSAAASLNGSLATASTSGSSSPSRSRR 115
Query: 239 PSSAPDLPG 247
+S+ G
Sbjct: 116 TTSSDLSSG 124
Score = 35.3 bits (81), Expect = 0.045
Identities = 29/129 (22%), Positives = 41/129 (31%), Gaps = 5/129 (3%)
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
S+ G +S+P +SA P +AP P PSS+P SS
Sbjct: 1 RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASP-PSSSPARNTSSS 59
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
+ L + PS PS+A L G + G SS
Sbjct: 60 SSFGLSKQRPSSLSRGRLSSRFVSPSRG----SPSAAASLNGSLATASTSGSSSPSRSRR 115
Query: 248 PSSAPDLPG 256
+S+ G
Sbjct: 116 TTSSDLSSG 124
Score = 35.3 bits (81), Expect = 0.045
Identities = 29/129 (22%), Positives = 41/129 (31%), Gaps = 5/129 (3%)
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
S+ G +S+P +SA P +AP P PSS+P SS
Sbjct: 1 RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASP-PSSSPARNTSSS 59
Query: 197 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
+ L + PS PS+A L G + G SS
Sbjct: 60 SSFGLSKQRPSSLSRGRLSSRFVSPSRG----SPSAAASLNGSLATASTSGSSSPSRSRR 115
Query: 257 PSSAPDLPG 265
+S+ G
Sbjct: 116 TTSSDLSSG 124
Score = 35.3 bits (81), Expect = 0.045
Identities = 29/129 (22%), Positives = 41/129 (31%), Gaps = 5/129 (3%)
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
S+ G +S+P +SA P +AP P PSS+P SS
Sbjct: 1 RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASP-PSSSPARNTSSS 59
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
+ L + PS PS+A L G + G SS
Sbjct: 60 SSFGLSKQRPSSLSRGRLSSRFVSPSRG----SPSAAASLNGSLATASTSGSSSPSRSRR 115
Query: 266 PSSAPDLPG 274
+S+ G
Sbjct: 116 TTSSDLSSG 124
Score = 32.2 bits (73), Expect = 0.50
Identities = 30/146 (20%), Positives = 46/146 (31%), Gaps = 10/146 (6%)
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
S+ G +S+P +SA P +AP P PSS+P SS
Sbjct: 1 RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASP-PSSSPARNTSSS 59
Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSY 301
+ L + PS PS+A L G + G SS
Sbjct: 60 SSFGLSKQRPSSLSRGRLSSRFVSPSRG----SPSAAASLNGSLATASTSGSSSPSRSRR 115
Query: 302 LGEAGHQKSPKGLEPKPAQISFVLNI 327
+ P+ +SF+ ++
Sbjct: 116 TTSSDLSSGNG-----PSVLSFMADV 136
Score = 31.1 bits (70), Expect = 1.1
Identities = 26/113 (23%), Positives = 35/113 (30%), Gaps = 5/113 (4%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P +SA P +AP P PSS+P SS+ L
Sbjct: 17 PRSSSRRRLSSSFLSTSASSRPRRLNAPASP-PSSSPARNTSSSSSFGLSKQRPSSLSRG 75
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
+ PS PS+A L G + G SS +S+ G
Sbjct: 76 RLSSRFVSPSRG----SPSAAASLNGSLATASTSGSSSPSRSRRTTSSDLSSG 124
Score = 31.1 bits (70), Expect = 1.3
Identities = 27/117 (23%), Positives = 37/117 (31%), Gaps = 5/117 (4%)
Query: 14 DYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 73
D + R +SA P +AP P PSS+P SS+
Sbjct: 13 DASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASP-PSSSPARNTSSSSSFGLSKQRPSS 71
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
L + PS PS+A L G + G SS +S+ G
Sbjct: 72 LSRGRLSSRFVSPSRG----SPSAAASLNGSLATASTSGSSSPSRSRRTTSSDLSSG 124
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 39.1 bits (92), Expect = 0.005
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
PG ++AP ++A P++AP P P+ AP +AP P ++A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAP------AAPAPAPPAAAAPAAPPKPAAAAA 91
Query: 270 PDLPGPSSAPDLPGPSSAPDLPGPSSTVL 298
+ + A T L
Sbjct: 92 AAAAPAAPPAAAAAAAPAAAAVEDEVTPL 120
Score = 37.9 bits (89), Expect = 0.013
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
PG ++AP ++A P++AP P P+ AP +AP P ++A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAP------AAPAPAPPAAAAPAAPPKPAAAAA 91
Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+ + A P L G ++ V
Sbjct: 92 AAAAPAAPPAAAAAAAPAAAAVEDEVTP-LRGAAAAV 127
Score = 37.6 bits (88), Expect = 0.013
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
PG ++AP ++A P++AP P P+ AP +AP P ++A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAP------AAPAPAPPAAAAPAAPPKPAAAAA 91
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
+ + A P L G ++A
Sbjct: 92 AAAAPAAPPAAAAAAAPAAAAVEDEVTP-LRGAAAA 126
Score = 37.6 bits (88), Expect = 0.013
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 39 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 98
PG ++AP ++A P++AP P P+ AP +AP P ++A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAP------AAPAPAPPAAAAPAAPPKPAAAAA 91
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
+ + A P L G ++A
Sbjct: 92 AAAAPAAPPAAAAAAAPAAAAVEDEVTP-LRGAAAA 126
Score = 37.6 bits (88), Expect = 0.013
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 48 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 107
PG ++AP ++A P++AP P P+ AP +AP P ++A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAP------AAPAPAPPAAAAPAAPPKPAAAAA 91
Query: 108 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
+ + A P L G ++A
Sbjct: 92 AAAAPAAPPAAAAAAAPAAAAVEDEVTP-LRGAAAA 126
Score = 37.6 bits (88), Expect = 0.013
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 57 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 116
PG ++AP ++A P++AP P P+ AP +AP P ++A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAP------AAPAPAPPAAAAPAAPPKPAAAAA 91
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
+ + A P L G ++A
Sbjct: 92 AAAAPAAPPAAAAAAAPAAAAVEDEVTP-LRGAAAA 126
Score = 37.6 bits (88), Expect = 0.013
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 66 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
PG ++AP ++A P++AP P P+ AP +AP P ++A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAP------AAPAPAPPAAAAPAAPPKPAAAAA 91
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
+ + A P L G ++A
Sbjct: 92 AAAAPAAPPAAAAAAAPAAAAVEDEVTP-LRGAAAA 126
Score = 37.6 bits (88), Expect = 0.013
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
PG ++AP ++A P++AP P P+ AP +AP P ++A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAP------AAPAPAPPAAAAPAAPPKPAAAAA 91
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
+ + A P L G ++A
Sbjct: 92 AAAAPAAPPAAAAAAAPAAAAVEDEVTP-LRGAAAA 126
Score = 37.6 bits (88), Expect = 0.013
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
PG ++AP ++A P++AP P P+ AP +AP P ++A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAP------AAPAPAPPAAAAPAAPPKPAAAAA 91
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
+ + A P L G ++A
Sbjct: 92 AAAAPAAPPAAAAAAAPAAAAVEDEVTP-LRGAAAA 126
Score = 37.6 bits (88), Expect = 0.013
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
PG ++AP ++A P++AP P P+ AP +AP P ++A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAP------AAPAPAPPAAAAPAAPPKPAAAAA 91
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
+ + A P L G ++A
Sbjct: 92 AAAAPAAPPAAAAAAAPAAAAVEDEVTP-LRGAAAA 126
Score = 37.6 bits (88), Expect = 0.013
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
PG ++AP ++A P++AP P P+ AP +AP P ++A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAP------AAPAPAPPAAAAPAAPPKPAAAAA 91
Query: 162 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
+ + A P L G ++A
Sbjct: 92 AAAAPAAPPAAAAAAAPAAAAVEDEVTP-LRGAAAA 126
Score = 37.6 bits (88), Expect = 0.013
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
PG ++AP ++A P++AP P P+ AP +AP P ++A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAP------AAPAPAPPAAAAPAAPPKPAAAAA 91
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
+ + A P L G ++A
Sbjct: 92 AAAAPAAPPAAAAAAAPAAAAVEDEVTP-LRGAAAA 126
Score = 37.6 bits (88), Expect = 0.013
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
PG ++AP ++A P++AP P P+ AP +AP P ++A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAP------AAPAPAPPAAAAPAAPPKPAAAAA 91
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 215
+ + A P L G ++A
Sbjct: 92 AAAAPAAPPAAAAAAAPAAAAVEDEVTP-LRGAAAA 126
Score = 37.6 bits (88), Expect = 0.013
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 129 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
PG ++AP ++A P++AP P P+ AP +AP P ++A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAP------AAPAPAPPAAAAPAAPPKPAAAAA 91
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
+ + A P L G ++A
Sbjct: 92 AAAAPAAPPAAAAAAAPAAAAVEDEVTP-LRGAAAA 126
Score = 37.6 bits (88), Expect = 0.013
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
PG ++AP ++A P++AP P P+ AP +AP P ++A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAP------AAPAPAPPAAAAPAAPPKPAAAAA 91
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 233
+ + A P L G ++A
Sbjct: 92 AAAAPAAPPAAAAAAAPAAAAVEDEVTP-LRGAAAA 126
Score = 37.6 bits (88), Expect = 0.013
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
PG ++AP ++A P++AP P P+ AP +AP P ++A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAP------AAPAPAPPAAAAPAAPPKPAAAAA 91
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
+ + A P L G ++A
Sbjct: 92 AAAAPAAPPAAAAAAAPAAAAVEDEVTP-LRGAAAA 126
Score = 37.6 bits (88), Expect = 0.013
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 156 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 215
PG ++AP ++A P++AP P P+ AP +AP P ++A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAP------AAPAPAPPAAAAPAAPPKPAAAAA 91
Query: 216 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
+ + A P L G ++A
Sbjct: 92 AAAAPAAPPAAAAAAAPAAAAVEDEVTP-LRGAAAA 126
Score = 37.6 bits (88), Expect = 0.013
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
PG ++AP ++A P++AP P P+ AP +AP P ++A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAP------AAPAPAPPAAAAPAAPPKPAAAAA 91
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
+ + A P L G ++A
Sbjct: 92 AAAAPAAPPAAAAAAAPAAAAVEDEVTP-LRGAAAA 126
Score = 37.6 bits (88), Expect = 0.013
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 174 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 233
PG ++AP ++A P++AP P P+ AP +AP P ++A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAP------AAPAPAPPAAAAPAAPPKPAAAAA 91
Query: 234 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
+ + A P L G ++A
Sbjct: 92 AAAAPAAPPAAAAAAAPAAAAVEDEVTP-LRGAAAA 126
Score = 37.6 bits (88), Expect = 0.013
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
PG ++AP ++A P++AP P P+ AP +AP P ++A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAP------AAPAPAPPAAAAPAAPPKPAAAAA 91
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 278
+ + A P L G ++A
Sbjct: 92 AAAAPAAPPAAAAAAAPAAAAVEDEVTP-LRGAAAA 126
Score = 37.6 bits (88), Expect = 0.013
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
PG ++AP ++A P++AP P P+ AP +AP P ++A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAP------AAPAPAPPAAAAPAAPPKPAAAAA 91
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 287
+ + A P L G ++A
Sbjct: 92 AAAAPAAPPAAAAAAAPAAAAVEDEVTP-LRGAAAA 126
Score = 34.9 bits (81), Expect = 0.095
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 2/95 (2%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 72
ADY P + +++ P++ P+ AP +AP P ++A
Sbjct: 34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAP-AAPAPAPPAAAAPAAPPKPAAAAAA 92
Query: 73 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 107
+ + A P L G ++A
Sbjct: 93 AAAPAAPPAAAAAAAPAAAAVEDEVTP-LRGAAAA 126
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 38.4 bits (89), Expect = 0.006
Identities = 50/234 (21%), Positives = 72/234 (30%), Gaps = 15/234 (6%)
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
P + GP P P AP P P P P +A + P ++
Sbjct: 328 VPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRP--LSPYTAYEDLKPPTS 385
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD-----LPGPSSAP 198
P PSS+P A P PG +S P+ L +
Sbjct: 386 PIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYE 445
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
DL P+S PS S + PD ++A D P A P
Sbjct: 446 DLKPPTS------PSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRP--L 497
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPK 312
S + P P P++ PSS ++ ++ + L + H PK
Sbjct: 498 SPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPK 551
Score = 36.1 bits (83), Expect = 0.038
Identities = 52/250 (20%), Positives = 78/250 (31%), Gaps = 14/250 (5%)
Query: 12 EADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSS 70
+A P V +P+ P+ P P + P P + P P +A + P ++P PSS
Sbjct: 334 DAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTPPSS 393
Query: 71 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD-----LPGPSSAPDLPGPSSA 125
+P A P PG +S P+ L + DL P+S
Sbjct: 394 SPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTS- 452
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
PS S + PD ++A D P A P S +
Sbjct: 453 -----PSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRP--LSPYAVYDD 505
Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
P P P++ PSS ++ ++ + P P P
Sbjct: 506 LKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSPYTMYEDLK 565
Query: 246 PGPSSAPDLP 255
P S P
Sbjct: 566 PPTSPTPSPV 575
Score = 34.5 bits (79), Expect = 0.11
Identities = 52/258 (20%), Positives = 73/258 (28%), Gaps = 15/258 (5%)
Query: 39 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 98
P + GP P P AP P P P P +A + P ++
Sbjct: 328 VPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRP--LSPYTAYEDLKPPTS 385
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD-----LPGPSSAP 153
P PSS+P A P PG +S P+ L +
Sbjct: 386 PIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYE 445
Query: 154 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 213
DL P+S PS S + PD ++A D P A P
Sbjct: 446 DLKPPTS------PSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRP--L 497
Query: 214 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 273
S + P P P++ PSS ++ ++ + P P P
Sbjct: 498 SPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSP 557
Query: 274 GPSSAPDLPGPSSAPDLP 291
P S P
Sbjct: 558 YTMYEDLKPPTSPTPSPV 575
Score = 34.5 bits (79), Expect = 0.12
Identities = 53/263 (20%), Positives = 74/263 (28%), Gaps = 15/263 (5%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
+PS GP P P AP P P P P +A +
Sbjct: 323 IPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRP--LSPYTAYEDL 380
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD-----LPG 130
P ++P PSS+P A P PG +S P+ L
Sbjct: 381 KPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSP 440
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
+ DL P+S PS S + PD ++A D P A
Sbjct: 441 YARYEDLKPPTS------PSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANM 494
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
P S + P P P++ PSS ++ ++ + P
Sbjct: 495 RP--LSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKP 552
Query: 251 APDLPGPSSAPDLPGPSSAPDLP 273
P P P S P
Sbjct: 553 RPLSPYTMYEDLKPPTSPTPSPV 575
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 38.2 bits (89), Expect = 0.009
Identities = 44/246 (17%), Positives = 57/246 (23%), Gaps = 17/246 (6%)
Query: 35 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--- 91
D SS SA + P SA S A D
Sbjct: 553 QDDYVAFSSESYNALSDDEQHSANVQSAQSAAEAQPSSQSLSPISAVTTAAASLADDDIL 612
Query: 92 ---LPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPD 145
L S S + G S+ D PS AP A ++
Sbjct: 613 DAVLAARDSLLSDLDALSPKEGDGKKSSADRKPKTPPSRAPPASLSKPASSPDASQTSAS 672
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----GPSSAPDLPGPSSAPDLP 201
S SAP P D P P A GP++A +
Sbjct: 673 FDLDPDFELATHQSVPEAALASGSAPAPPPVPDPYDRPPWEEAPEVASANDGPNNAAEGN 732
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLP----GPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
S D + P + P+S L SS + G
Sbjct: 733 LSESVEDASNSELQAVEQQATHQPQVQAEAQSPASTTALTQTSSEVQDTELNLVLLSSGS 792
Query: 258 SSAPDL 263
+ L
Sbjct: 793 ITGHPL 798
Score = 34.7 bits (80), Expect = 0.12
Identities = 27/150 (18%), Positives = 37/150 (24%), Gaps = 8/150 (5%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 91
PS AP A ++ S SAP P D
Sbjct: 649 PSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPYD 708
Query: 92 LP----GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----GPSSA 143
P P A GP++A + S D + P + P+S
Sbjct: 709 RPPWEEAPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSPAST 768
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 173
L SS + G + L
Sbjct: 769 TALTQTSSEVQDTELNLVLLSSGSITGHPL 798
Score = 34.3 bits (79), Expect = 0.14
Identities = 47/261 (18%), Positives = 65/261 (24%), Gaps = 17/261 (6%)
Query: 50 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 109
S+ P+ ++ + PS +SA +SA D + S
Sbjct: 482 NSAVPEQIDSTAEQSVVNPSVTDTQVDDTSA----SNNSAADNTVDDNYSAEDTLESNGL 537
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
G + P + D SS SA + P S
Sbjct: 538 DEGDYAQDSAPLDAYQDDYVAFSSESYNALSDDEQHSANVQSAQSAAEAQPSSQSLSPIS 597
Query: 170 APDLPGPSSAPD------LPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPG 220
A S A D L S S + G S+ D PS AP
Sbjct: 598 AVTTAAASLADDDILDAVLAARDSLLSDLDALSPKEGDGKKSSADRKPKTPPSRAPPASL 657
Query: 221 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----GPS 276
A ++ S SAP P D P P
Sbjct: 658 SKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPYDRPPWEEAPE 717
Query: 277 SAPDLPGPSSAPDLPGPSSTV 297
A GP++A + S
Sbjct: 718 VASANDGPNNAAEGNLSESVE 738
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 37.5 bits (88), Expect = 0.012
Identities = 25/168 (14%), Positives = 45/168 (26%), Gaps = 7/168 (4%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
P+ P P +A + + P + P P+SAP +
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAP----QQAPAVPLP 416
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSSA 134
+++ L G + A +++ P S+ L AP P+
Sbjct: 417 ETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKK 476
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPD-LPGPSSAPDLPGPSSAPD 181
++ P A + P A L + D
Sbjct: 477 EAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEAIERD 524
Score = 35.6 bits (83), Expect = 0.052
Identities = 30/171 (17%), Positives = 50/171 (29%), Gaps = 13/171 (7%)
Query: 50 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 109
P P++P S+AP + A P + AP P P+SAP +
Sbjct: 364 PLPEPEVPPQSAAP--AASAQATAAPTAAVAPPQAPAVPPP----PASAP----QQAPAV 413
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGP 167
+++ L G + A +++ P S+ L AP P
Sbjct: 414 PLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAP 473
Query: 168 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD-LPGPSSAPDLPGPSSAPD 217
+ ++ P A + P A L + D
Sbjct: 474 AKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEAIERD 524
Score = 35.6 bits (83), Expect = 0.052
Identities = 30/171 (17%), Positives = 50/171 (29%), Gaps = 13/171 (7%)
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
P P++P S+AP + A P + AP P P+SAP +
Sbjct: 364 PLPEPEVPPQSAAP--AASAQATAAPTAAVAPPQAPAVPPP----PASAP----QQAPAV 413
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGP 203
+++ L G + A +++ P S+ L AP P
Sbjct: 414 PLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAP 473
Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD-LPGPSSAPDLPGPSSAPD 253
+ ++ P A + P A L + D
Sbjct: 474 AKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEAIERD 524
Score = 35.6 bits (83), Expect = 0.052
Identities = 30/171 (17%), Positives = 50/171 (29%), Gaps = 13/171 (7%)
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
P P++P S+AP + A P + AP P P+SAP +
Sbjct: 364 PLPEPEVPPQSAAP--AASAQATAAPTAAVAPPQAPAVPPP----PASAP----QQAPAV 413
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD--LPGP 239
+++ L G + A +++ P S+ L AP P
Sbjct: 414 PLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAP 473
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD-LPGPSSAPDLPGPSSAPD 289
+ ++ P A + P A L + D
Sbjct: 474 AKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEAIERD 524
Score = 29.8 bits (68), Expect = 3.0
Identities = 26/117 (22%), Positives = 38/117 (32%), Gaps = 6/117 (5%)
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
P P++P S+AP + A P + AP P P+SAP P+
Sbjct: 364 PLPEPEVPPQSAAP--AASAQATAAPTAAVAPPQAPAVPPP----PASAPQQAPAVPLPE 417
Query: 263 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPA 319
A + S P + V + A + +P LE PA
Sbjct: 418 TTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPA 474
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 37.7 bits (87), Expect = 0.013
Identities = 37/163 (22%), Positives = 47/163 (28%), Gaps = 6/163 (3%)
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPD-LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
P P+ G P PG + S D P P PGP+
Sbjct: 509 EPPEGPEASGLP--PKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKE 566
Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
PS P L P P P+ P P + P P D+P
Sbjct: 567 HK---PSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKS 623
Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
P+ P P P S+P+ P P P +P P
Sbjct: 624 PKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPP 666
Score = 37.7 bits (87), Expect = 0.013
Identities = 37/163 (22%), Positives = 47/163 (28%), Gaps = 6/163 (3%)
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPD-LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
P P+ G P PG + S D P P PGP+
Sbjct: 509 EPPEGPEASGLP--PKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKE 566
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
PS P L P P P+ P P + P P D+P
Sbjct: 567 HK---PSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKS 623
Query: 249 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
P+ P P P S+P+ P P P +P P
Sbjct: 624 PKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPP 666
Score = 35.4 bits (81), Expect = 0.071
Identities = 47/251 (18%), Positives = 65/251 (25%), Gaps = 2/251 (0%)
Query: 14 DYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 73
++ PS + +P+ P P P P P + P P P+L +P
Sbjct: 566 EHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPK 625
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
P +P P P P P P + P P P P L +
Sbjct: 626 RPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAK 685
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
+ + + LP P P LP P P PD
Sbjct: 686 SKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPF--EPIGDPDAEQ 743
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
P P + A A + + P A P S +
Sbjct: 744 PDDIEFFTPPEEERTFFHETPADTPLPDILAEEFKEEDIHAETGEPDEAMKRPDSPSEHE 803
Query: 254 LPGPSSAPDLP 264
P P LP
Sbjct: 804 DKPPGDHPSLP 814
Score = 35.1 bits (80), Expect = 0.084
Identities = 47/258 (18%), Positives = 65/258 (25%), Gaps = 4/258 (1%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
V ++P PS P L P P P+ P P + P P
Sbjct: 557 VGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPE 616
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
D+P P+ P P P S+P+ P P P +P P +
Sbjct: 617 LLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFY 676
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG----PS 195
+ + + P+ PG P P P P
Sbjct: 677 DDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPI 736
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
PD P P + A A + + P A P
Sbjct: 737 GDPDAEQPDDIEFFTPPEEERTFFHETPADTPLPDILAEEFKEEDIHAETGEPDEAMKRP 796
Query: 256 GPSSAPDLPGPSSAPDLP 273
S + P P LP
Sbjct: 797 DSPSEHEDKPPGDHPSLP 814
>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed.
Length = 413
Score = 37.2 bits (86), Expect = 0.016
Identities = 36/175 (20%), Positives = 61/175 (34%), Gaps = 13/175 (7%)
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP- 198
P P + G A DL +P+ ++A + ++AP ++A P+ AP
Sbjct: 245 PEIVPGVKGVQEALDL----RSPERKERAAAREARAAAAAP-AATAAAAAPAEEPAVAPM 299
Query: 199 ------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
+ + + +A D A A + P ++ P+
Sbjct: 300 AAIRAAHVETAADKGERAAKPAAADKAADKPADRPDAAEKAAEKPAEAAPRAADKPAGQA 359
Query: 253 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGH 307
P SSA D PG S+ P+ A D P + G S + + +A H
Sbjct: 360 ADPASSSA-DKPGASADAAARTPARARDAAAPDADTPPGGASLAAAQARVADADH 413
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 37.2 bits (87), Expect = 0.016
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 35 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 88 SAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 119
A ++A ++ +S D+
Sbjct: 433 LAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
Score = 37.2 bits (87), Expect = 0.016
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 44 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 96
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 97 SAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 128
A ++A ++ +S D+
Sbjct: 433 LAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
Score = 37.2 bits (87), Expect = 0.016
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 53 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 105
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 106 SAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 137
A ++A ++ +S D+
Sbjct: 433 LAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
Score = 37.2 bits (87), Expect = 0.016
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 62 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 114
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 115 SAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
A ++A ++ +S D+
Sbjct: 433 LAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
Score = 37.2 bits (87), Expect = 0.016
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 71 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 123
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 124 SAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 155
A ++A ++ +S D+
Sbjct: 433 LAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
Score = 37.2 bits (87), Expect = 0.016
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 80 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 133 SAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 164
A ++A ++ +S D+
Sbjct: 433 LAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
Score = 37.2 bits (87), Expect = 0.016
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 89 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 142 SAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 173
A ++A ++ +S D+
Sbjct: 433 LAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
Score = 37.2 bits (87), Expect = 0.016
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 98 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 151 SAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
A ++A ++ +S D+
Sbjct: 433 LAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
Score = 37.2 bits (87), Expect = 0.016
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 107 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 159
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 160 SAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
A ++A ++ +S D+
Sbjct: 433 LAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
Score = 37.2 bits (87), Expect = 0.016
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 116 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 168
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 169 SAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
A ++A ++ +S D+
Sbjct: 433 LAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
Score = 37.2 bits (87), Expect = 0.016
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 125 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 177
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 178 SAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
A ++A ++ +S D+
Sbjct: 433 LAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
Score = 37.2 bits (87), Expect = 0.016
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 134 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 187 SAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
A ++A ++ +S D+
Sbjct: 433 LAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
Score = 37.2 bits (87), Expect = 0.016
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 143 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 196 SAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 227
A ++A ++ +S D+
Sbjct: 433 LAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
Score = 37.2 bits (87), Expect = 0.016
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 152 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 205 SAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
A ++A ++ +S D+
Sbjct: 433 LAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
Score = 37.2 bits (87), Expect = 0.016
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 161 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 213
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 214 SAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
A ++A ++ +S D+
Sbjct: 433 LAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
Score = 37.2 bits (87), Expect = 0.016
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 170 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 222
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 223 SAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
A ++A ++ +S D+
Sbjct: 433 LAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
Score = 37.2 bits (87), Expect = 0.016
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 179 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 232 SAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
A ++A ++ +S D+
Sbjct: 433 LAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
Score = 37.2 bits (87), Expect = 0.016
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 188 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 241 SAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
A ++A ++ +S D+
Sbjct: 433 LAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
Score = 37.2 bits (87), Expect = 0.016
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 197 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 250 SAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
A ++A ++ +S D+
Sbjct: 433 LAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
Score = 37.2 bits (87), Expect = 0.016
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 206 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 259 SAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
A ++A ++ +S D+
Sbjct: 433 LAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
Score = 36.4 bits (85), Expect = 0.028
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 9/91 (9%)
Query: 28 DLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
DLP P A P PG PG AP P ++AP + A P + A
Sbjct: 376 DLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALA 434
Query: 81 P-DLPGPSSAPDLPGPSSAPDLPGPSSAPDL 110
++A ++ +S D+
Sbjct: 435 AVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
Score = 36.0 bits (84), Expect = 0.044
Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
Query: 215 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 268 SAPDLPGPSSAPDLPGPSSAPDLPGPS 294
A P +A P + P P+
Sbjct: 433 LA---AVPDAAAAAAAPPAPAAAPQPA 456
Score = 33.0 bits (76), Expect = 0.31
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLP 84
P PG PG AP P ++AP + A P + A ++A
Sbjct: 390 GPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPA 448
Query: 85 GPSSAPDLPGPSSAPDL 101
++ +S D+
Sbjct: 449 PAAAPQPAVRLNSFEDI 465
Score = 30.3 bits (69), Expect = 2.5
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Query: 224 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 276
A DLP P A P PG PG AP P ++AP + A GP+
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAA--GGPA 430
Query: 277 SAPDLPGPSSAPDLPGPSST 296
+A P +A P +
Sbjct: 431 AALAAV-PDAAAAAAAPPAP 449
Score = 30.3 bits (69), Expect = 2.8
Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 233 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 286 SAPDLPGPSSTV 297
A ++
Sbjct: 433 LAAVPDAAAAAA 444
Score = 29.1 bits (66), Expect = 5.7
Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 242 APDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
A DLP P A P PG PG AP P ++AP + A P +
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGP-PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAA 432
Query: 295 -STVLGSYLGEAGHQKSPKGLEPKPAQISF 323
+ V + A +P SF
Sbjct: 433 LAAVPDAAAAAAAPPAPAAAPQPAVRLNSF 462
>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein
UL32. The large phosphorylated protein (UL32-like) of
herpes viruses is the polypeptide most frequently
reactive in immuno-blotting analyses with antisera when
compared with other viral proteins.
Length = 777
Score = 36.4 bits (84), Expect = 0.028
Identities = 39/287 (13%), Positives = 64/287 (22%), Gaps = 11/287 (3%)
Query: 39 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 98
P P+S ++PG + +L P ++ D P+ + A L P A
Sbjct: 375 PSPNSGKEMPGILTTENLDLPLASTD--STEMDPEDKRGGAVKINNSGILAWGLKTPGLA 432
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 158
+ + S + A
Sbjct: 433 VNDERSIAVSSDGITDVLDPPSPLRLHSSDKVIDSVSPPSKRRVSAPASRLDDAKRPEVT 492
Query: 159 SSA--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
++ A ++ D S +L + P +P +
Sbjct: 493 ATPESSGSDSEGGAS-GREDETSSDAESVVSIKELRPRIGFINKSPPPKSPPKSRRTLIV 551
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLP--GPSSAPDL---PGPSSAPDLPGPSSAPD 271
+S P P L D + G + SA
Sbjct: 552 A-LSLASPSTAGSPRPKPSLGKFVIGTDPFAFANTVRLTDNMRGGNGVGSSVKPKGSASS 610
Query: 272 LPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKP 318
P DL + P S G + K P GL
Sbjct: 611 KPLTGPGSDLKPATLNGKTPSSSLVGAARNAGASSKVKIPSGLGGFT 657
Score = 36.4 bits (84), Expect = 0.031
Identities = 38/264 (14%), Positives = 61/264 (23%), Gaps = 11/264 (4%)
Query: 18 STVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 77
S+ ++ ++ D S +L + P +P +
Sbjct: 497 SSGSDSEGGASGREDETSSDAESVVSIKELRPRIGFINKSPPPKSPPKSRRTLIVA-LSL 555
Query: 78 SSAPDLPGPSSAPDLPGPSSAPDLP--GPSSAPDL---PGPSSAPDLPGPSSAPDLPGPS 132
+S P P L D + G + SA P
Sbjct: 556 ASPSTAGSPRPKPSLGKFVIGTDPFAFANTVRLTDNMRGGNGVGSSVKPKGSASSKPLTG 615
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
DL + P S ++ + PS P S +
Sbjct: 616 PGSDLKPATLNGKTPSSSLVGAARNAGASSKVKIPSGLGGFTSPISLLESALEDVLTSAT 675
Query: 193 GPSSAPDLPGPSSAP---DLPGPSSAP--DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
+ P G SA D+ + + P P P P + L
Sbjct: 676 STPVKKNDPYLWDTNGEKAGGGTESASTTDVFQNFAGLNKKTPVGGPFQPKPPLSRALDS 735
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPD 271
SS G + G D
Sbjct: 736 ASSPGGSGGKPGLDGVEGAKGKDD 759
Score = 36.0 bits (83), Expect = 0.039
Identities = 42/276 (15%), Positives = 64/276 (23%), Gaps = 13/276 (4%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 74
+ E P+ G S G ++ D S +L + P +P
Sbjct: 485 DAKRPEVTATPESSGSDSEGGASGREDETSSDAESVVSIKELRPRIGFINKSPPPKSPPK 544
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP--GPSSAPDL---PGPSSAPDLP 129
+ +S P P L D + G +
Sbjct: 545 SRRTLIVA-LSLASPSTAGSPRPKPSLGKFVIGTDPFAFANTVRLTDNMRGGNGVGSSVK 603
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
SA P DL + P S ++ + PS P S
Sbjct: 604 PKGSASSKPLTGPGSDLKPATLNGKTPSSSLVGAARNAGASSKVKIPSGLGGFTSPISLL 663
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAP--DLPGPSSAPDLPGPSSAPD 244
+ + P G SA D+ + + P P
Sbjct: 664 ESALEDVLTSATSTPVKKNDPYLWDTNGEKAGGGTESASTTDVFQNFAGLNKKTPVGGPF 723
Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 280
P P + L SS G + G D
Sbjct: 724 QPKPPLSRALDSASSPGGSGGKPGLDGVEGAKGKDD 759
Score = 35.7 bits (82), Expect = 0.059
Identities = 42/249 (16%), Positives = 59/249 (23%), Gaps = 16/249 (6%)
Query: 6 DKHVFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 65
+ V + + P P P S L A L PS+A P P L
Sbjct: 517 AESVVSIKELRPRIGFINKSPPPKSPPKSRRTLI---VALSLASPSTAGS---PRPKPSL 570
Query: 66 PGPSSAPDLP--GPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
D + G + SA P DL + P
Sbjct: 571 GKFVIGTDPFAFANTVRLTDNMRGGNGVGSSVKPKGSASSKPLTGPGSDLKPATLNGKTP 630
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 180
S ++ + PS P S + + P
Sbjct: 631 SSSLVGAARNAGASSKVKIPSGLGGFTSPISLLESALEDVLTSATSTPVKKNDPYLWDTN 690
Query: 181 ---DLPGPSSAP--DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 235
G SA D+ + + P P P P + L SS G
Sbjct: 691 GEKAGGGTESASTTDVFQNFAGLNKKTPVGGPFQPKPPLSRALDSASSPGGSGGKPGLDG 750
Query: 236 LPGPSSAPD 244
+ G D
Sbjct: 751 VEGAKGKDD 759
Score = 34.5 bits (79), Expect = 0.13
Identities = 35/235 (14%), Positives = 53/235 (22%), Gaps = 11/235 (4%)
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
S +L + P +P + +S P P L D
Sbjct: 522 SIKELRPRIGFINKSPPPKSPPKSRRTLIVA-LSLASPSTAGSPRPKPSLGKFVIGTDPF 580
Query: 130 --GPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
+ G + SA P DL + P S
Sbjct: 581 AFANTVRLTDNMRGGNGVGSSVKPKGSASSKPLTGPGSDLKPATLNGKTPSSSLVGAARN 640
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSS 241
++ + PS P S + + P G S
Sbjct: 641 AGASSKVKIPSGLGGFTSPISLLESALEDVLTSATSTPVKKNDPYLWDTNGEKAGGGTES 700
Query: 242 AP--DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
A D+ + + P P P P + L SS G + G
Sbjct: 701 ASTTDVFQNFAGLNKKTPVGGPFQPKPPLSRALDSASSPGGSGGKPGLDGVEGAK 755
Score = 31.4 bits (71), Expect = 1.1
Identities = 33/219 (15%), Positives = 50/219 (22%), Gaps = 11/219 (5%)
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
S +L + P +P + +S P P L D
Sbjct: 522 SIKELRPRIGFINKSPPPKSPPKSRRTLIVA-LSLASPSTAGSPRPKPSLGKFVIGTDPF 580
Query: 148 --GPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
+ G + SA P DL + P S
Sbjct: 581 AFANTVRLTDNMRGGNGVGSSVKPKGSASSKPLTGPGSDLKPATLNGKTPSSSLVGAARN 640
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSS 259
++ + PS P S + + P G S
Sbjct: 641 AGASSKVKIPSGLGGFTSPISLLESALEDVLTSATSTPVKKNDPYLWDTNGEKAGGGTES 700
Query: 260 AP--DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
A D+ + + P P P P + L SS
Sbjct: 701 ASTTDVFQNFAGLNKKTPVGGPFQPKPPLSRALDSASSP 739
>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional.
Length = 694
Score = 36.4 bits (84), Expect = 0.030
Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 2/109 (1%)
Query: 24 PLEPDLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
P PD G P + A LP PD P SS P +P ++ P
Sbjct: 314 PWLPDTEGREGDDLAPTAVCTDAGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVR 373
Query: 82 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
P+S ++ A P ++ P A L + DL G
Sbjct: 374 TGTAPTSLANVSHADPAVAQPTQAATLAGAAPKGATHLMLEETLADLRG 422
Score = 36.4 bits (84), Expect = 0.033
Identities = 21/87 (24%), Positives = 30/87 (34%)
Query: 62 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 121
A LP PD P SS P +P ++ P P+S ++ A P
Sbjct: 336 AGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPTSLANVSHADPAVAQPT 395
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPG 148
++ P A L + DL G
Sbjct: 396 QAATLAGAAPKGATHLMLEETLADLRG 422
Score = 36.4 bits (84), Expect = 0.033
Identities = 21/87 (24%), Positives = 30/87 (34%)
Query: 71 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
A LP PD P SS P +P ++ P P+S ++ A P
Sbjct: 336 AGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPTSLANVSHADPAVAQPT 395
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPG 157
++ P A L + DL G
Sbjct: 396 QAATLAGAAPKGATHLMLEETLADLRG 422
Score = 36.4 bits (84), Expect = 0.033
Identities = 21/87 (24%), Positives = 30/87 (34%)
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
A LP PD P SS P +P ++ P P+S ++ A P
Sbjct: 336 AGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPTSLANVSHADPAVAQPT 395
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPG 166
++ P A L + DL G
Sbjct: 396 QAATLAGAAPKGATHLMLEETLADLRG 422
Score = 36.4 bits (84), Expect = 0.033
Identities = 21/87 (24%), Positives = 30/87 (34%)
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
A LP PD P SS P +P ++ P P+S ++ A P
Sbjct: 336 AGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPTSLANVSHADPAVAQPT 395
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPG 175
++ P A L + DL G
Sbjct: 396 QAATLAGAAPKGATHLMLEETLADLRG 422
Score = 36.4 bits (84), Expect = 0.033
Identities = 21/87 (24%), Positives = 30/87 (34%)
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
A LP PD P SS P +P ++ P P+S ++ A P
Sbjct: 336 AGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPTSLANVSHADPAVAQPT 395
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPG 184
++ P A L + DL G
Sbjct: 396 QAATLAGAAPKGATHLMLEETLADLRG 422
Score = 36.4 bits (84), Expect = 0.033
Identities = 21/87 (24%), Positives = 30/87 (34%)
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
A LP PD P SS P +P ++ P P+S ++ A P
Sbjct: 336 AGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPTSLANVSHADPAVAQPT 395
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPG 193
++ P A L + DL G
Sbjct: 396 QAATLAGAAPKGATHLMLEETLADLRG 422
Score = 36.4 bits (84), Expect = 0.033
Identities = 21/87 (24%), Positives = 30/87 (34%)
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
A LP PD P SS P +P ++ P P+S ++ A P
Sbjct: 336 AGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPTSLANVSHADPAVAQPT 395
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPG 202
++ P A L + DL G
Sbjct: 396 QAATLAGAAPKGATHLMLEETLADLRG 422
Score = 36.4 bits (84), Expect = 0.033
Identities = 21/87 (24%), Positives = 30/87 (34%)
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
A LP PD P SS P +P ++ P P+S ++ A P
Sbjct: 336 AGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPTSLANVSHADPAVAQPT 395
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPG 211
++ P A L + DL G
Sbjct: 396 QAATLAGAAPKGATHLMLEETLADLRG 422
Score = 36.4 bits (84), Expect = 0.033
Identities = 21/87 (24%), Positives = 30/87 (34%)
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
A LP PD P SS P +P ++ P P+S ++ A P
Sbjct: 336 AGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPTSLANVSHADPAVAQPT 395
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPG 220
++ P A L + DL G
Sbjct: 396 QAATLAGAAPKGATHLMLEETLADLRG 422
Score = 36.4 bits (84), Expect = 0.033
Identities = 21/87 (24%), Positives = 30/87 (34%)
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
A LP PD P SS P +P ++ P P+S ++ A P
Sbjct: 336 AGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPTSLANVSHADPAVAQPT 395
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPG 229
++ P A L + DL G
Sbjct: 396 QAATLAGAAPKGATHLMLEETLADLRG 422
Score = 36.4 bits (84), Expect = 0.033
Identities = 21/87 (24%), Positives = 30/87 (34%)
Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
A LP PD P SS P +P ++ P P+S ++ A P
Sbjct: 336 AGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPTSLANVSHADPAVAQPT 395
Query: 212 PSSAPDLPGPSSAPDLPGPSSAPDLPG 238
++ P A L + DL G
Sbjct: 396 QAATLAGAAPKGATHLMLEETLADLRG 422
Score = 36.4 bits (84), Expect = 0.033
Identities = 21/87 (24%), Positives = 30/87 (34%)
Query: 161 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
A LP PD P SS P +P ++ P P+S ++ A P
Sbjct: 336 AGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPTSLANVSHADPAVAQPT 395
Query: 221 PSSAPDLPGPSSAPDLPGPSSAPDLPG 247
++ P A L + DL G
Sbjct: 396 QAATLAGAAPKGATHLMLEETLADLRG 422
Score = 36.4 bits (84), Expect = 0.033
Identities = 21/87 (24%), Positives = 30/87 (34%)
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
A LP PD P SS P +P ++ P P+S ++ A P
Sbjct: 336 AGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPTSLANVSHADPAVAQPT 395
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPG 256
++ P A L + DL G
Sbjct: 396 QAATLAGAAPKGATHLMLEETLADLRG 422
Score = 36.4 bits (84), Expect = 0.033
Identities = 21/87 (24%), Positives = 30/87 (34%)
Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
A LP PD P SS P +P ++ P P+S ++ A P
Sbjct: 336 AGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPTSLANVSHADPAVAQPT 395
Query: 239 PSSAPDLPGPSSAPDLPGPSSAPDLPG 265
++ P A L + DL G
Sbjct: 396 QAATLAGAAPKGATHLMLEETLADLRG 422
Score = 36.4 bits (84), Expect = 0.033
Identities = 21/87 (24%), Positives = 30/87 (34%)
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
A LP PD P SS P +P ++ P P+S ++ A P
Sbjct: 336 AGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPTSLANVSHADPAVAQPT 395
Query: 248 PSSAPDLPGPSSAPDLPGPSSAPDLPG 274
++ P A L + DL G
Sbjct: 396 QAATLAGAAPKGATHLMLEETLADLRG 422
Score = 36.4 bits (84), Expect = 0.033
Identities = 21/87 (24%), Positives = 30/87 (34%)
Query: 197 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
A LP PD P SS P +P ++ P P+S ++ A P
Sbjct: 336 AGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPTSLANVSHADPAVAQPT 395
Query: 257 PSSAPDLPGPSSAPDLPGPSSAPDLPG 283
++ P A L + DL G
Sbjct: 396 QAATLAGAAPKGATHLMLEETLADLRG 422
Score = 36.4 bits (84), Expect = 0.033
Identities = 21/87 (24%), Positives = 30/87 (34%)
Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
A LP PD P SS P +P ++ P P+S ++ A P
Sbjct: 336 AGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPTSLANVSHADPAVAQPT 395
Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPG 292
++ P A L + DL G
Sbjct: 396 QAATLAGAAPKGATHLMLEETLADLRG 422
Score = 32.2 bits (73), Expect = 0.58
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 4/88 (4%)
Query: 216 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL--- 272
PD G P P + P + D P A P +S PD+
Sbjct: 317 PDTEGREGDDLAPTAVCTDAGLLPDTPLLPDAPEGSSD-PVVPVAAATPVDASLPDVRTG 375
Query: 273 PGPSSAPDLPGPSSAPDLPGPSSTVLGS 300
P+S ++ A P ++T+ G+
Sbjct: 376 TAPTSLANVSHADPAVAQPTQAATLAGA 403
>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9. The KAR9 protein in
Saccharomyces cerevisiae is a cytoskeletal protein
required for karyogamy, correct positioning of the
mitotic spindle and for orientation of cytoplasmic
microtubules. KAR9 localises at the shmoo tip in mating
cells and at the tip of the growing bud in anaphase.
Length = 626
Score = 35.6 bits (82), Expect = 0.061
Identities = 43/230 (18%), Positives = 67/230 (29%), Gaps = 12/230 (5%)
Query: 100 DLPGPSSAPDLPG--PSSAPDLPGPSSAPDLPGPSSAPDLPGPSS----APDLPGPSSAP 153
D P S+ D P PSS+ + P S P S PG S A L + P
Sbjct: 386 DYSNPGSSIDTPSSSPSSSVIMTPPDSGPGSNVSSRRVGTPGSKSDRVGAVLLRRMNIKP 445
Query: 154 DL--PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPD 208
L ++ + P S+ P P + G + + +
Sbjct: 446 TLASIPDEKPSNISVFEDSETSPNSSTLLRDPPPKKCGEESGHLPNNPFFNKLKLTLSSI 505
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
P + P+ + S+ L S + + P P L A L S
Sbjct: 506 PPLSPRQSIITLPTPSRP-ASRISSLSLRLGSYSGSIVSPPPYPTLVSRKGAAGLSFNRS 564
Query: 269 APDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKP 318
D+ G P+ P LP + + S + + P
Sbjct: 565 VSDIEGERIGRYNLLPTRIPALPFKAESTTSSRRSSSLPSPTGVIGFPGS 614
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 34.0 bits (78), Expect = 0.18
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 14 DYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAP 72
D ++ ++P P++AP P ++A P PS + PS+ P+ + P
Sbjct: 368 DASGGRGPKQHIKPVFTQPAAAP-QPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPP 425
Query: 73 DLPGPSSAP-DLPGPSSAPDLPGPSSAP 99
+ A + PS+AP P+
Sbjct: 426 TVSVDPPAAVPVNPPSTAPQAVRPAQFK 453
Score = 32.1 bits (73), Expect = 0.60
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDL 263
S P P P++AP P ++A P PS + PS+ P+ + P +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAP-QPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 264 PGPSSAP-DLPGPSSAPDLPGPSSAPDLPGPSSTVLGS 300
A + PS+AP P+ + + + S
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSS 465
Score = 31.3 bits (71), Expect = 1.1
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 34 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDL 92
S P P P++AP P ++A P PS + PS+ P+ + P +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAP-QPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 93 PGPSSAP-DLPGPSSAPDLPGPSSAP 117
A + PS+AP P+
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFK 453
Score = 31.3 bits (71), Expect = 1.1
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 43 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDL 101
S P P P++AP P ++A P PS + PS+ P+ + P +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAP-QPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 102 PGPSSAP-DLPGPSSAPDLPGPSSAP 126
A + PS+AP P+
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFK 453
Score = 31.3 bits (71), Expect = 1.1
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 52 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDL 110
S P P P++AP P ++A P PS + PS+ P+ + P +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAP-QPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 111 PGPSSAP-DLPGPSSAPDLPGPSSAP 135
A + PS+AP P+
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFK 453
Score = 31.3 bits (71), Expect = 1.1
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 61 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDL 119
S P P P++AP P ++A P PS + PS+ P+ + P +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAP-QPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 120 PGPSSAP-DLPGPSSAPDLPGPSSAP 144
A + PS+AP P+
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFK 453
Score = 31.3 bits (71), Expect = 1.1
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 70 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDL 128
S P P P++AP P ++A P PS + PS+ P+ + P +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAP-QPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 129 PGPSSAP-DLPGPSSAPDLPGPSSAP 153
A + PS+AP P+
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFK 453
Score = 31.3 bits (71), Expect = 1.1
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDL 137
S P P P++AP P ++A P PS + PS+ P+ + P +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAP-QPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 138 PGPSSAP-DLPGPSSAPDLPGPSSAP 162
A + PS+AP P+
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFK 453
Score = 31.3 bits (71), Expect = 1.1
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 88 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDL 146
S P P P++AP P ++A P PS + PS+ P+ + P +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAP-QPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 147 PGPSSAP-DLPGPSSAPDLPGPSSAP 171
A + PS+AP P+
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFK 453
Score = 31.3 bits (71), Expect = 1.1
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 97 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDL 155
S P P P++AP P ++A P PS + PS+ P+ + P +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAP-QPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 156 PGPSSAP-DLPGPSSAPDLPGPSSAP 180
A + PS+AP P+
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFK 453
Score = 31.3 bits (71), Expect = 1.1
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 106 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDL 164
S P P P++AP P ++A P PS + PS+ P+ + P +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAP-QPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 165 PGPSSAP-DLPGPSSAPDLPGPSSAP 189
A + PS+AP P+
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFK 453
Score = 31.3 bits (71), Expect = 1.1
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDL 173
S P P P++AP P ++A P PS + PS+ P+ + P +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAP-QPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 174 PGPSSAP-DLPGPSSAPDLPGPSSAP 198
A + PS+AP P+
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFK 453
Score = 31.3 bits (71), Expect = 1.1
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDL 182
S P P P++AP P ++A P PS + PS+ P+ + P +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAP-QPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 183 PGPSSAP-DLPGPSSAPDLPGPSSAP 207
A + PS+AP P+
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFK 453
Score = 31.3 bits (71), Expect = 1.1
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDL 191
S P P P++AP P ++A P PS + PS+ P+ + P +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAP-QPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 192 PGPSSAP-DLPGPSSAPDLPGPSSAP 216
A + PS+AP P+
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFK 453
Score = 31.3 bits (71), Expect = 1.1
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDL 200
S P P P++AP P ++A P PS + PS+ P+ + P +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAP-QPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 201 PGPSSAP-DLPGPSSAPDLPGPSSAP 225
A + PS+AP P+
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFK 453
Score = 31.3 bits (71), Expect = 1.1
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDL 209
S P P P++AP P ++A P PS + PS+ P+ + P +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAP-QPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 210 PGPSSAP-DLPGPSSAPDLPGPSSAP 234
A + PS+AP P+
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFK 453
Score = 31.3 bits (71), Expect = 1.1
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 160 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDL 218
S P P P++AP P ++A P PS + PS+ P+ + P +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAP-QPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 219 PGPSSAP-DLPGPSSAPDLPGPSSAP 243
A + PS+AP P+
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFK 453
Score = 31.3 bits (71), Expect = 1.1
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 169 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDL 227
S P P P++AP P ++A P PS + PS+ P+ + P +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAP-QPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 228 PGPSSAP-DLPGPSSAPDLPGPSSAP 252
A + PS+AP P+
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFK 453
Score = 31.3 bits (71), Expect = 1.1
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 178 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDL 236
S P P P++AP P ++A P PS + PS+ P+ + P +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAP-QPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 237 PGPSSAP-DLPGPSSAPDLPGPSSAP 261
A + PS+AP P+
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFK 453
Score = 31.3 bits (71), Expect = 1.1
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDL 245
S P P P++AP P ++A P PS + PS+ P+ + P +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAP-QPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 246 PGPSSAP-DLPGPSSAPDLPGPSSAP 270
A + PS+AP P+
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFK 453
Score = 31.3 bits (71), Expect = 1.1
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDL 254
S P P P++AP P ++A P PS + PS+ P+ + P +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAP-QPSAAAAAS-PSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 255 PGPSSAP-DLPGPSSAPDLPGPSSAP 279
A + PS+AP P+
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFK 453
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 33.8 bits (77), Expect = 0.19
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
P P+ +PD+ + PDLP P P + P+ PG A +LP P+SA P P
Sbjct: 382 PSPAGSPDVKKKAPEPDLPQPDRHP----GPAKPEAPGARPA-ELPSPASA---PTPEQQ 433
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 119
P + + P P S+ ++ DL
Sbjct: 434 PPVARSAPLPPSPQASAPRNVASGKPGVDL 463
Score = 33.8 bits (77), Expect = 0.19
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
P P+ +PD+ + PDLP P P + P+ PG A +LP P+SA P P
Sbjct: 382 PSPAGSPDVKKKAPEPDLPQPDRHP----GPAKPEAPGARPA-ELPSPASA---PTPEQQ 433
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 173
P + + P P S+ ++ DL
Sbjct: 434 PPVARSAPLPPSPQASAPRNVASGKPGVDL 463
Score = 33.8 bits (77), Expect = 0.19
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
P P+ +PD+ + PDLP P P + P+ PG A +LP P+SA P P
Sbjct: 382 PSPAGSPDVKKKAPEPDLPQPDRHP----GPAKPEAPGARPA-ELPSPASA---PTPEQQ 433
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 227
P + + P P S+ ++ DL
Sbjct: 434 PPVARSAPLPPSPQASAPRNVASGKPGVDL 463
Score = 33.8 bits (77), Expect = 0.19
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
P P+ +PD+ + PDLP P P + P+ PG A +LP P+SA P P
Sbjct: 382 PSPAGSPDVKKKAPEPDLPQPDRHP----GPAKPEAPGARPA-ELPSPASA---PTPEQQ 433
Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
P + + P P S+ ++ DL
Sbjct: 434 PPVARSAPLPPSPQASAPRNVASGKPGVDL 463
Score = 30.3 bits (68), Expect = 2.7
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EPDLP P P + P+ PG A +LP P+SA P P P + + P P
Sbjct: 396 EPDLPQPDRHP----GPAKPEAPGARPA-ELPSPASA---PTPEQQPPVARSAPLPPSPQ 447
Query: 86 PSSAPDLPGPSSAPDL 101
S+ ++ DL
Sbjct: 448 ASAPRNVASGKPGVDL 463
>gnl|CDD|222843 PHA02030, PHA02030, hypothetical protein.
Length = 336
Score = 33.4 bits (76), Expect = 0.21
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
L + +LP + G ++AP +P +A S P +P + PD+P
Sbjct: 253 LIIKPKSKAAGSNLPAVPNVAADAGSAAAPAVPAA-AAAVAQAAPSVPQVPNVAVLPDVP 311
Query: 76 -----GPSSAPDLPGPSSAPDLPG 94
+AP++P P P
Sbjct: 312 QVAPVAAPAAPEVPAVPVVPAAPQ 335
Score = 33.4 bits (76), Expect = 0.22
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 7/103 (6%)
Query: 61 SAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 119
A D PG + L G P +A +LP + G ++AP +P +A
Sbjct: 234 KATDFPGSALHILLGGGEDLIIKPKSKAAGSNLPAVPNVAADAGSAAAPAVPAA-AAAVA 292
Query: 120 PGPSSAPDLPGPSSAPDLP-----GPSSAPDLPGPSSAPDLPG 157
S P +P + PD+P +AP++P P P
Sbjct: 293 QAAPSVPQVPNVAVLPDVPQVAPVAAPAAPEVPAVPVVPAAPQ 335
Score = 33.4 bits (76), Expect = 0.22
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 7/103 (6%)
Query: 106 SAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 164
A D PG + L G P +A +LP + G ++AP +P +A
Sbjct: 234 KATDFPGSALHILLGGGEDLIIKPKSKAAGSNLPAVPNVAADAGSAAAPAVPAA-AAAVA 292
Query: 165 PGPSSAPDLPGPSSAPDLP-----GPSSAPDLPGPSSAPDLPG 202
S P +P + PD+P +AP++P P P
Sbjct: 293 QAAPSVPQVPNVAVLPDVPQVAPVAAPAAPEVPAVPVVPAAPQ 335
Score = 33.4 bits (76), Expect = 0.22
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 7/103 (6%)
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
A D PG + L G P +A +LP + G ++AP +P +A
Sbjct: 234 KATDFPGSALHILLGGGEDLIIKPKSKAAGSNLPAVPNVAADAGSAAAPAVPAA-AAAVA 292
Query: 210 PGPSSAPDLPGPSSAPDLP-----GPSSAPDLPGPSSAPDLPG 247
S P +P + PD+P +AP++P P P
Sbjct: 293 QAAPSVPQVPNVAVLPDVPQVAPVAAPAAPEVPAVPVVPAAPQ 335
Score = 33.4 bits (76), Expect = 0.22
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 7/103 (6%)
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
A D PG + L G P +A +LP + G ++AP +P +A
Sbjct: 234 KATDFPGSALHILLGGGEDLIIKPKSKAAGSNLPAVPNVAADAGSAAAPAVPAA-AAAVA 292
Query: 255 PGPSSAPDLPGPSSAPDLP-----GPSSAPDLPGPSSAPDLPG 292
S P +P + PD+P +AP++P P P
Sbjct: 293 QAAPSVPQVPNVAVLPDVPQVAPVAAPAAPEVPAVPVVPAAPQ 335
Score = 28.4 bits (63), Expect = 8.9
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 35 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 94
+LP + G ++AP +P ++ +AP +P + LP +
Sbjct: 263 GSNLPAVPNVAADAGSAAAPAVPAAAA----AVAQAAPSVPQVPNVAVLPDVPQVAPVAA 318
Query: 95 PSSAPDLPGPSSAPDLPG 112
P +AP++P P P
Sbjct: 319 P-AAPEVPAVPVVPAAPQ 335
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 33.9 bits (77), Expect = 0.22
Identities = 58/290 (20%), Positives = 84/290 (28%), Gaps = 7/290 (2%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
EP P LP P P P ++P +S+ + P +
Sbjct: 552 EPASTEPVHDQLLPAPGLGPLQIQPLTSPTTSQLASSAPSYAQTPWPVPHPSQTPEPPTT 611
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
S P+ P P P L P + P P P + P
Sbjct: 612 QSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQIGH 671
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
P P P+ A + AP P P P P P P + A
Sbjct: 672 IPYQPSPTGANTMLPIQWAPGTMQPP--PRAPTPMRPPAAPPGRAQRPAAATGRARPPAA 729
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD-LPGPSSAPDLPGPSSAPDLPGPSSAP 261
P + P ++ P++AP P++AP P P P P
Sbjct: 730 APGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQR 789
Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSP 311
P+ P ++ L P +AP GP+ +L L + P
Sbjct: 790 PRGAPTPQPPPQAGPTSMQL-MPRAAPGQQGPTKQILRQLLTGGVKRGRP 838
>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein
secretion system, contains a FHA domain [Intracellular
trafficking, secretion, and vesicular transport;
Signal transduction mechanisms].
Length = 430
Score = 33.2 bits (76), Expect = 0.27
Identities = 40/145 (27%), Positives = 47/145 (32%), Gaps = 8/145 (5%)
Query: 26 EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD-LPGPSSAPDLP 84
EPD P + SS D+ A P P P L P D +P SA L
Sbjct: 108 EPDESDPDTGSPQSAVSST-DMDDDFLADIEPEPRLPPGLTDPLQLADPVPNGFSADPLS 166
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPS 141
S + P P PS + + P S P G DL P A PGP
Sbjct: 167 ALQSESLIAQPD--PAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAASPPGPQ 224
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPG 166
P + S AP L G
Sbjct: 225 EGPTIS-ASQPAQRDHAVLAPFLRG 248
Score = 32.8 bits (75), Expect = 0.31
Identities = 40/142 (28%), Positives = 46/142 (32%), Gaps = 10/142 (7%)
Query: 59 PSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPD-LPGPSSAPDLPGPS 114
S PD P SA D+ A P P P L P D +P SA L
Sbjct: 110 DESDPDTGSPQSAVSSTDMDDDFLADIEPEPRLPPGLTDPLQLADPVPNGFSADPLSALQ 169
Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAP 171
S + P P PS + + P S P G DL P A PGP P
Sbjct: 170 SESLIAQPD--PAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAASPPGPQEGP 227
Query: 172 DLPGPSSAPDLPGPSSAPDLPG 193
+ S AP L G
Sbjct: 228 TIS-ASQPAQRDHAVLAPFLRG 248
Score = 32.8 bits (75), Expect = 0.31
Identities = 40/142 (28%), Positives = 46/142 (32%), Gaps = 10/142 (7%)
Query: 86 PSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPD-LPGPSSAPDLPGPS 141
S PD P SA D+ A P P P L P D +P SA L
Sbjct: 110 DESDPDTGSPQSAVSSTDMDDDFLADIEPEPRLPPGLTDPLQLADPVPNGFSADPLSALQ 169
Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAP 198
S + P P PS + + P S P G DL P A PGP P
Sbjct: 170 SESLIAQPD--PAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAASPPGPQEGP 227
Query: 199 DLPGPSSAPDLPGPSSAPDLPG 220
+ S AP L G
Sbjct: 228 TIS-ASQPAQRDHAVLAPFLRG 248
Score = 32.8 bits (75), Expect = 0.31
Identities = 40/142 (28%), Positives = 46/142 (32%), Gaps = 10/142 (7%)
Query: 113 PSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPD-LPGPSSAPDLPGPS 168
S PD P SA D+ A P P P L P D +P SA L
Sbjct: 110 DESDPDTGSPQSAVSSTDMDDDFLADIEPEPRLPPGLTDPLQLADPVPNGFSADPLSALQ 169
Query: 169 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAP 225
S + P P PS + + P S P G DL P A PGP P
Sbjct: 170 SESLIAQPD--PAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAASPPGPQEGP 227
Query: 226 DLPGPSSAPDLPGPSSAPDLPG 247
+ S AP L G
Sbjct: 228 TIS-ASQPAQRDHAVLAPFLRG 248
Score = 32.8 bits (75), Expect = 0.31
Identities = 40/142 (28%), Positives = 46/142 (32%), Gaps = 10/142 (7%)
Query: 140 PSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPD-LPGPSSAPDLPGPS 195
S PD P SA D+ A P P P L P D +P SA L
Sbjct: 110 DESDPDTGSPQSAVSSTDMDDDFLADIEPEPRLPPGLTDPLQLADPVPNGFSADPLSALQ 169
Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAP 252
S + P P PS + + P S P G DL P A PGP P
Sbjct: 170 SESLIAQPD--PAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAASPPGPQEGP 227
Query: 253 DLPGPSSAPDLPGPSSAPDLPG 274
+ S AP L G
Sbjct: 228 TIS-ASQPAQRDHAVLAPFLRG 248
Score = 32.5 bits (74), Expect = 0.47
Identities = 36/128 (28%), Positives = 42/128 (32%), Gaps = 9/128 (7%)
Query: 167 PSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSSAPD-LPGPSSAPDLPGPS 222
S PD P SA D+ A P P P L P D +P SA L
Sbjct: 110 DESDPDTGSPQSAVSSTDMDDDFLADIEPEPRLPPGLTDPLQLADPVPNGFSADPLSALQ 169
Query: 223 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAP 279
S + P P PS + + P S P G DL P A PGP P
Sbjct: 170 SESLIAQPD--PAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAASPPGPQEGP 227
Query: 280 DLPGPSSA 287
+ A
Sbjct: 228 TISASQPA 235
Score = 28.6 bits (64), Expect = 8.5
Identities = 26/108 (24%), Positives = 30/108 (27%), Gaps = 11/108 (10%)
Query: 15 YLPSTVTERPLEPDLPGPSSAPDLP-------GPSSAPDLPGPSSAPDLPGPSSAPDLPG 67
P L +P SA L P PS + + P S P G
Sbjct: 142 LPPGLTDPLQLADPVPNGFSADPLSALQSESLIAQPDPAGGAPSISRNSEAPLSDPASAG 201
Query: 68 P---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 112
DL P A PGP P + S AP L G
Sbjct: 202 GIDTPFPDDLDVPPIAASPPGPQEGPTIS-ASQPAQRDHAVLAPFLRG 248
>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional.
Length = 580
Score = 33.2 bits (76), Expect = 0.29
Identities = 28/144 (19%), Positives = 38/144 (26%), Gaps = 9/144 (6%)
Query: 172 DLPGPSSAPDLPGP--SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
DL P G S+ +P P GP D P A P P PG
Sbjct: 53 DLYPPRETGSGGGVATSTIYTVPRP-----PRGPEQTLDKPDSLPASRELPPGPTPVPPG 107
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
P + P + P AP SS+ P PS +
Sbjct: 108 GFRGASSPRLGADSTSPRFLYQVNFP-VILAPIGESNSSSE-ELSEEEEHSRPPPSESLK 165
Query: 290 LPGPSSTVLGSYLGEAGHQKSPKG 313
+ + H++S
Sbjct: 166 VKNGGKVYPKGFSKHKTHKRSEFS 189
>gnl|CDD|221371 pfam12004, DUF3498, Domain of unknown function (DUF3498). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 433 to 538 amino acids in length. This domain is
found associated with pfam00616, pfam00168. This domain
has two conserved sequence motifs: DLQ and PLSFQNP.
Length = 489
Score = 33.1 bits (75), Expect = 0.33
Identities = 52/296 (17%), Positives = 76/296 (25%), Gaps = 15/296 (5%)
Query: 17 PSTVTERPLEPDLPGPSSAPDLPGPSSA-PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
S+ ++ + DL LP P+ DL + + + P+L
Sbjct: 35 LSSGLQKIMMDDLDSSVDFTRLPSPTPENKDLFFVTRPSLAQSSPAYSSSYSEINEPELG 94
Query: 76 GPS-----SAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPD 127
P+ S DL +S P P G A S+ S P
Sbjct: 95 MPNGGRSLSLVDLQDAASGQVHSSPMGLPGALGLRRASVPWSARSGQSSIAGGLRLSQPQ 154
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
P P + P P S + +S+ S
Sbjct: 155 SAPTVRLLHAAPAQPQLLQPLSFQNPVYHMAAPLPVSPRGDSGSENHSSASSHSNSEDCS 214
Query: 188 APDLPGPSSAPDLPGPSS-----APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
S + S+ LP P LP +SA G S
Sbjct: 215 LSAGFSNSGGEEFTRRSTDFTRRQLSLPDRQHQPALPRQNSAGPQRRVDQPSPPGGGSHR 274
Query: 243 PDLPGP-SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
+P S+ G + + P + P SS D P A S V
Sbjct: 275 GRIPPSLLSSLPSEGSMLSSEWPQSGARPRQQSSSSKGDSPELRPAAGHLQQPSPV 330
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 33.2 bits (75), Expect = 0.34
Identities = 47/255 (18%), Positives = 74/255 (29%), Gaps = 5/255 (1%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 91
P +P S P + S P S+ P+ P+S P++
Sbjct: 443 PHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNA-TS 501
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
+ P+ P++ + P P +S P P +
Sbjct: 502 PTPAVTTPNATSPTTQKT--SDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTE 559
Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
+ ++ PS P+S PSS+ P +S P
Sbjct: 560 ESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGI-PSSSHSTPRSNSTSTTPL 618
Query: 212 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 271
+SA G + + P S + S P PG +S PG SS PG +
Sbjct: 619 LTSAHPTGGENITEETPSVPSTTHVSTLSPGPG-PGTTSQVSGPGNSSTSRYPGEVHVTE 677
Query: 272 LPGPSSAPDLPGPSS 286
+A PS
Sbjct: 678 GMPNPNATSPSAPSG 692
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 32.8 bits (75), Expect = 0.42
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 25 LEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 84
LE P P SA +AP P P++AP +P + A + P P +A P
Sbjct: 377 LERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA--PAPPAAAAPP 434
Query: 85 GPSSAPDLPG 94
S+ P
Sbjct: 435 ARSADPAAAA 444
Score = 32.4 bits (74), Expect = 0.49
Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 8/119 (6%)
Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
AP P + P +A P P++AP +P + A + P P +A
Sbjct: 379 RGAPAPPSAAWGAPTPAAPAA---PPPAAAPPVPPAAPARPAAARPAPA--PAPPAAAAP 433
Query: 273 PGPSSAPDLPGPSSAPDLPGPSSTVLGS--YLGEAGHQKSPKGLEPKPAQISFVLNIFA 329
P S+ P S+ + V G LG + Q SP G+ +I F F
Sbjct: 434 PARSADPAAA-ASAGDRWRAFVAFVKGKKPALGASLEQGSPLGVSAGLLEIGFPEGSFE 491
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 97
P P SA +AP P P++AP +P + A + P P +A P S+
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA--PAPPAAAAPPARSA 438
Query: 98 APDLPG 103
P
Sbjct: 439 DPAAAA 444
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
P P SA +AP P P++AP +P + A + P P +A P S+
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA--PAPPAAAAPPARSA 438
Query: 107 APDLPG 112
P
Sbjct: 439 DPAAAA 444
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
P P SA +AP P P++AP +P + A + P P +A P S+
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA--PAPPAAAAPPARSA 438
Query: 116 APDLPG 121
P
Sbjct: 439 DPAAAA 444
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
P P SA +AP P P++AP +P + A + P P +A P S+
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA--PAPPAAAAPPARSA 438
Query: 125 APDLPG 130
P
Sbjct: 439 DPAAAA 444
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
P P SA +AP P P++AP +P + A + P P +A P S+
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA--PAPPAAAAPPARSA 438
Query: 134 APDLPG 139
P
Sbjct: 439 DPAAAA 444
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
P P SA +AP P P++AP +P + A + P P +A P S+
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA--PAPPAAAAPPARSA 438
Query: 143 APDLPG 148
P
Sbjct: 439 DPAAAA 444
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
P P SA +AP P P++AP +P + A + P P +A P S+
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA--PAPPAAAAPPARSA 438
Query: 152 APDLPG 157
P
Sbjct: 439 DPAAAA 444
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
P P SA +AP P P++AP +P + A + P P +A P S+
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA--PAPPAAAAPPARSA 438
Query: 161 APDLPG 166
P
Sbjct: 439 DPAAAA 444
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
P P SA +AP P P++AP +P + A + P P +A P S+
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA--PAPPAAAAPPARSA 438
Query: 170 APDLPG 175
P
Sbjct: 439 DPAAAA 444
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
P P SA +AP P P++AP +P + A + P P +A P S+
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA--PAPPAAAAPPARSA 438
Query: 179 APDLPG 184
P
Sbjct: 439 DPAAAA 444
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
P P SA +AP P P++AP +P + A + P P +A P S+
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA--PAPPAAAAPPARSA 438
Query: 188 APDLPG 193
P
Sbjct: 439 DPAAAA 444
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
P P SA +AP P P++AP +P + A + P P +A P S+
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA--PAPPAAAAPPARSA 438
Query: 197 APDLPG 202
P
Sbjct: 439 DPAAAA 444
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
P P SA +AP P P++AP +P + A + P P +A P S+
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA--PAPPAAAAPPARSA 438
Query: 206 APDLPG 211
P
Sbjct: 439 DPAAAA 444
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 155 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 214
P P SA +AP P P++AP +P + A + P P +A P S+
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA--PAPPAAAAPPARSA 438
Query: 215 APDLPG 220
P
Sbjct: 439 DPAAAA 444
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 223
P P SA +AP P P++AP +P + A + P P +A P S+
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA--PAPPAAAAPPARSA 438
Query: 224 APDLPG 229
P
Sbjct: 439 DPAAAA 444
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
P P SA +AP P P++AP +P + A + P P +A P S+
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA--PAPPAAAAPPARSA 438
Query: 233 APDLPG 238
P
Sbjct: 439 DPAAAA 444
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
P P SA +AP P P++AP +P + A + P P +A P S+
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA--PAPPAAAAPPARSA 438
Query: 242 APDLPG 247
P
Sbjct: 439 DPAAAA 444
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
P P SA +AP P P++AP +P + A + P P +A P S+
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA--PAPPAAAAPPARSA 438
Query: 251 APDLPG 256
P
Sbjct: 439 DPAAAA 444
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
P P SA +AP P P++AP +P + A + P P +A P S+
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA--PAPPAAAAPPARSA 438
Query: 260 APDLPG 265
P
Sbjct: 439 DPAAAA 444
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 32.4 bits (73), Expect = 0.54
Identities = 21/154 (13%), Positives = 35/154 (22%), Gaps = 5/154 (3%)
Query: 169 SAPDLPGPSSAPDLP----GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
P + P P P P P AP G P+ + P
Sbjct: 342 QTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPV 401
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
+ P P P + AP+ P + + P
Sbjct: 402 QPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQP-VAGNAWQAEEQQSTFAPQS 460
Query: 285 SSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKP 318
+ + + + +EP+P
Sbjct: 461 TYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEP 494
Score = 30.8 bits (69), Expect = 1.8
Identities = 22/142 (15%), Positives = 36/142 (25%), Gaps = 8/142 (5%)
Query: 187 SAPDLPGPSSAPDLP----GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
P + P P P P P AP G P+ + P
Sbjct: 342 QTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPV 401
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYL 302
+ P P P + AP+ P +A ST +
Sbjct: 402 QPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQST----FA 457
Query: 303 GEAGHQKSPKGLEPKPAQISFV 324
++ +Q +P + +
Sbjct: 458 PQSTYQTEQTYQQPAAQEPLYQ 479
Score = 29.7 bits (66), Expect = 3.7
Identities = 18/135 (13%), Positives = 28/135 (20%), Gaps = 1/135 (0%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 91
P P P AP G P+ + P +
Sbjct: 362 PVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYY 421
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
P P P + AP+ P + + P + + A P
Sbjct: 422 APAPEQPAQQPYYAPAPEQP-VAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQ 480
Query: 152 APDLPGPSSAPDLPG 166
+ P
Sbjct: 481 PQPVEQQPVVEPEPV 495
Score = 28.5 bits (63), Expect = 10.0
Identities = 17/131 (12%), Positives = 27/131 (20%), Gaps = 1/131 (0%)
Query: 27 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
P P AP G P+ + P + P P
Sbjct: 366 PQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAP 425
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
P + AP+ P + + P + + A P +
Sbjct: 426 EQPAQQPYYAPAPEQP-VAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPV 484
Query: 147 PGPSSAPDLPG 157
P
Sbjct: 485 EQQPVVEPEPV 495
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 32.0 bits (73), Expect = 0.70
Identities = 57/268 (21%), Positives = 70/268 (26%), Gaps = 12/268 (4%)
Query: 51 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 110
S+A + GP S + +P G ++ D P PDL S
Sbjct: 72 SAAVRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGYEASTD---PEYIPDLQPDPSLWGT 128
Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
P S P P + L L AP LP P P
Sbjct: 129 APKPEPQPPQAPESQP-QPQTPAQKMLSLEEVEAQLQQRQQAPQLPQP------PQQVLP 181
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPG 229
+P +A GP P LP PS AP P P P P
Sbjct: 182 QGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPP 241
Query: 230 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD-LPGPSSAPDLPGPSSAP 288
P P PG S P P P P P + P PG + P P
Sbjct: 242 PLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQ 301
Query: 289 DLPGPSSTVLGSYLGEAGHQKSPKGLEP 316
P ++ L
Sbjct: 302 PQLLPLVQQPQGQQRGPQFREQLVQLSQ 329
Score = 31.7 bits (72), Expect = 0.89
Identities = 52/240 (21%), Positives = 61/240 (25%), Gaps = 15/240 (6%)
Query: 37 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 96
GP S + +P G ++ D P PDL S P
Sbjct: 85 PSVGPDSDLSQKTSTFSPCQSGYEASTD---PEYIPDLQPDPSLWGTAPKPEPQPPQAPE 141
Query: 97 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 156
S P P + L L AP LP P P +P +A
Sbjct: 142 SQP-QPQTPAQKMLSLEEVEAQLQQRQQAPQLPQP------PQQVLPQGMPPRQAAFPQQ 194
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPGPSSA 215
GP P LP PS AP P P P P P P PG S
Sbjct: 195 GPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQ 254
Query: 216 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 275
P P P P P P G ++ P L
Sbjct: 255 M----PPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQ 310
>gnl|CDD|236733 PRK10672, PRK10672, rare lipoprotein A; Provisional.
Length = 361
Score = 31.2 bits (71), Expect = 1.3
Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 4/101 (3%)
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPG 265
PDL G P + AP G S P +S+ L P++
Sbjct: 198 PDLSGGMGTPSVQ---PAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVL 254
Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAG 306
S P PSSAP ++AP SS+ G+++ + G
Sbjct: 255 EGSEPTPTAPSSAPATAPAAAAPQAAATSSSASGNFVVQVG 295
Score = 29.6 bits (67), Expect = 3.2
Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 4/94 (4%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPD 82
P PDL G P + AP G S P +S+ L P++
Sbjct: 195 PARPDLSGGMGTPSVQ---PAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAP 251
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 116
S P PSSAP ++AP SS+
Sbjct: 252 GVLEGSEPTPTAPSSAPATAPAAAAPQAAATSSS 285
Score = 28.9 bits (65), Expect = 5.8
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 36 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPG 94
PDL G P + AP G S P +S+ L P++
Sbjct: 198 PDLSGGMGTPSVQ---PAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVL 254
Query: 95 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
S P PSSAP ++AP SS+
Sbjct: 255 EGSEPTPTAPSSAPATAPAAAAPQAAATSSS 285
Score = 28.9 bits (65), Expect = 5.8
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 45 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPG 103
PDL G P + AP G S P +S+ L P++
Sbjct: 198 PDLSGGMGTPSVQ---PAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVL 254
Query: 104 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
S P PSSAP ++AP SS+
Sbjct: 255 EGSEPTPTAPSSAPATAPAAAAPQAAATSSS 285
Score = 28.9 bits (65), Expect = 5.8
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 54 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPG 112
PDL G P + AP G S P +S+ L P++
Sbjct: 198 PDLSGGMGTPSVQ---PAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVL 254
Query: 113 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
S P PSSAP ++AP SS+
Sbjct: 255 EGSEPTPTAPSSAPATAPAAAAPQAAATSSS 285
Score = 28.9 bits (65), Expect = 5.8
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 63 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPG 121
PDL G P + AP G S P +S+ L P++
Sbjct: 198 PDLSGGMGTPSVQ---PAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVL 254
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
S P PSSAP ++AP SS+
Sbjct: 255 EGSEPTPTAPSSAPATAPAAAAPQAAATSSS 285
Score = 28.9 bits (65), Expect = 5.8
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPG 130
PDL G P + AP G S P +S+ L P++
Sbjct: 198 PDLSGGMGTPSVQ---PAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVL 254
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
S P PSSAP ++AP SS+
Sbjct: 255 EGSEPTPTAPSSAPATAPAAAAPQAAATSSS 285
Score = 28.9 bits (65), Expect = 5.8
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPG 139
PDL G P + AP G S P +S+ L P++
Sbjct: 198 PDLSGGMGTPSVQ---PAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVL 254
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
S P PSSAP ++AP SS+
Sbjct: 255 EGSEPTPTAPSSAPATAPAAAAPQAAATSSS 285
Score = 28.9 bits (65), Expect = 5.8
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPG 148
PDL G P + AP G S P +S+ L P++
Sbjct: 198 PDLSGGMGTPSVQ---PAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVL 254
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
S P PSSAP ++AP SS+
Sbjct: 255 EGSEPTPTAPSSAPATAPAAAAPQAAATSSS 285
Score = 28.9 bits (65), Expect = 5.8
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPG 157
PDL G P + AP G S P +S+ L P++
Sbjct: 198 PDLSGGMGTPSVQ---PAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVL 254
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
S P PSSAP ++AP SS+
Sbjct: 255 EGSEPTPTAPSSAPATAPAAAAPQAAATSSS 285
Score = 28.9 bits (65), Expect = 5.8
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 108 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPG 166
PDL G P + AP G S P +S+ L P++
Sbjct: 198 PDLSGGMGTPSVQ---PAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVL 254
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
S P PSSAP ++AP SS+
Sbjct: 255 EGSEPTPTAPSSAPATAPAAAAPQAAATSSS 285
Score = 28.9 bits (65), Expect = 5.8
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPG 175
PDL G P + AP G S P +S+ L P++
Sbjct: 198 PDLSGGMGTPSVQ---PAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVL 254
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
S P PSSAP ++AP SS+
Sbjct: 255 EGSEPTPTAPSSAPATAPAAAAPQAAATSSS 285
Score = 28.9 bits (65), Expect = 5.8
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPG 184
PDL G P + AP G S P +S+ L P++
Sbjct: 198 PDLSGGMGTPSVQ---PAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVL 254
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 215
S P PSSAP ++AP SS+
Sbjct: 255 EGSEPTPTAPSSAPATAPAAAAPQAAATSSS 285
Score = 28.9 bits (65), Expect = 5.8
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPG 193
PDL G P + AP G S P +S+ L P++
Sbjct: 198 PDLSGGMGTPSVQ---PAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVL 254
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
S P PSSAP ++AP SS+
Sbjct: 255 EGSEPTPTAPSSAPATAPAAAAPQAAATSSS 285
Score = 28.9 bits (65), Expect = 5.8
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPG 202
PDL G P + AP G S P +S+ L P++
Sbjct: 198 PDLSGGMGTPSVQ---PAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVL 254
Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 233
S P PSSAP ++AP SS+
Sbjct: 255 EGSEPTPTAPSSAPATAPAAAAPQAAATSSS 285
Score = 28.9 bits (65), Expect = 5.8
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPG 211
PDL G P + AP G S P +S+ L P++
Sbjct: 198 PDLSGGMGTPSVQ---PAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVL 254
Query: 212 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
S P PSSAP ++AP SS+
Sbjct: 255 EGSEPTPTAPSSAPATAPAAAAPQAAATSSS 285
Score = 28.9 bits (65), Expect = 5.8
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 162 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPG 220
PDL G P + AP G S P +S+ L P++
Sbjct: 198 PDLSGGMGTPSVQ---PAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVL 254
Query: 221 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
S P PSSAP ++AP SS+
Sbjct: 255 EGSEPTPTAPSSAPATAPAAAAPQAAATSSS 285
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
Length = 590
Score = 30.8 bits (70), Expect = 1.6
Identities = 17/75 (22%), Positives = 22/75 (29%)
Query: 19 TVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 78
+ + P SS+ SS P P P SS P P L PS
Sbjct: 1 SSSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPS 60
Query: 79 SAPDLPGPSSAPDLP 93
P++ P
Sbjct: 61 PPSVTLPPAATTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 38 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 97
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 98 APDLP 102
P
Sbjct: 71 TTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 47 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 107 APDLP 111
P
Sbjct: 71 TTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 56 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 116 APDLP 120
P
Sbjct: 71 TTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 125 APDLP 129
P
Sbjct: 71 TTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 74 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 134 APDLP 138
P
Sbjct: 71 TTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 83 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 143 APDLP 147
P
Sbjct: 71 TTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 92 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 152 APDLP 156
P
Sbjct: 71 TTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 161 APDLP 165
P
Sbjct: 71 TTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 170 APDLP 174
P
Sbjct: 71 TTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 179 APDLP 183
P
Sbjct: 71 TTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 188 APDLP 192
P
Sbjct: 71 TTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 197 APDLP 201
P
Sbjct: 71 TTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 206 APDLP 210
P
Sbjct: 71 TTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 155 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 214
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 215 APDLP 219
P
Sbjct: 71 TTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 223
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 224 APDLP 228
P
Sbjct: 71 TTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 233 APDLP 237
P
Sbjct: 71 TTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 241
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 242 APDLP 246
P
Sbjct: 71 TTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 251 APDLP 255
P
Sbjct: 71 TTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 260 APDLP 264
P
Sbjct: 71 TTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 269 APDLP 273
P
Sbjct: 71 TTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 277
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 278 APDLP 282
P
Sbjct: 71 TTQTP 75
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Query: 227 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 286
SS+ SS P P P SS P P L PS P++
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAA 70
Query: 287 APDLP 291
P
Sbjct: 71 TTQTP 75
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown].
Length = 931
Score = 30.6 bits (69), Expect = 2.0
Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 3/95 (3%)
Query: 16 LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
L S V E P P +A P P++A + P P +P +
Sbjct: 35 LRSLVAEGAAGPVAKAAEQMA---APEAAEAAPLPAAAESIASPEVPPPVPPAPAQEGEA 91
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 110
+ P SA P P L A +
Sbjct: 92 PAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAI 126
Score = 29.8 bits (67), Expect = 4.0
Identities = 19/123 (15%), Positives = 29/123 (23%), Gaps = 8/123 (6%)
Query: 17 PSTVTERPLEPDLPGPSSAPDL--PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 74
+ E L S + A P +A
Sbjct: 10 AAAAFEVITSAQLSRIGRIERELRELRSLVAEGAAGPVAKAAEQM------AAPEAAEAA 63
Query: 75 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
P P++A + P P +P + + P SA P P L A
Sbjct: 64 PLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFA 123
Query: 135 PDL 137
+
Sbjct: 124 AAI 126
Score = 29.4 bits (66), Expect = 4.9
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 50 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 109
S + A P +A P P++A + P P +P +
Sbjct: 36 RSLVAEGAAGPVAKAAEQM------AAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEG 89
Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
+ P SA P P L A +
Sbjct: 90 EAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAI 126
Score = 29.4 bits (66), Expect = 4.9
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 59 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 118
S + A P +A P P++A + P P +P +
Sbjct: 36 RSLVAEGAAGPVAKAAEQM------AAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEG 89
Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 155
+ P SA P P L A +
Sbjct: 90 EAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAI 126
Score = 29.4 bits (66), Expect = 4.9
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 68 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 127
S + A P +A P P++A + P P +P +
Sbjct: 36 RSLVAEGAAGPVAKAAEQM------AAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEG 89
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 164
+ P SA P P L A +
Sbjct: 90 EAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAI 126
Score = 29.4 bits (66), Expect = 4.9
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 77 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
S + A P +A P P++A + P P +P +
Sbjct: 36 RSLVAEGAAGPVAKAAEQM------AAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEG 89
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 173
+ P SA P P L A +
Sbjct: 90 EAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAI 126
Score = 29.4 bits (66), Expect = 4.9
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 86 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
S + A P +A P P++A + P P +P +
Sbjct: 36 RSLVAEGAAGPVAKAAEQM------AAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEG 89
Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
+ P SA P P L A +
Sbjct: 90 EAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAI 126
Score = 29.4 bits (66), Expect = 4.9
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 95 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 154
S + A P +A P P++A + P P +P +
Sbjct: 36 RSLVAEGAAGPVAKAAEQM------AAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEG 89
Query: 155 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
+ P SA P P L A +
Sbjct: 90 EAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAI 126
Score = 29.4 bits (66), Expect = 4.9
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 104 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 163
S + A P +A P P++A + P P +P +
Sbjct: 36 RSLVAEGAAGPVAKAAEQM------AAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEG 89
Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
+ P SA P P L A +
Sbjct: 90 EAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAI 126
Score = 29.4 bits (66), Expect = 4.9
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 113 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 172
S + A P +A P P++A + P P +P +
Sbjct: 36 RSLVAEGAAGPVAKAAEQM------AAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEG 89
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
+ P SA P P L A +
Sbjct: 90 EAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAI 126
Score = 29.4 bits (66), Expect = 4.9
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
S + A P +A P P++A + P P +P +
Sbjct: 36 RSLVAEGAAGPVAKAAEQM------AAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEG 89
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
+ P SA P P L A +
Sbjct: 90 EAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAI 126
Score = 29.4 bits (66), Expect = 4.9
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
S + A P +A P P++A + P P +P +
Sbjct: 36 RSLVAEGAAGPVAKAAEQM------AAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEG 89
Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 227
+ P SA P P L A +
Sbjct: 90 EAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAI 126
Score = 29.4 bits (66), Expect = 4.9
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
S + A P +A P P++A + P P +P +
Sbjct: 36 RSLVAEGAAGPVAKAAEQM------AAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEG 89
Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
+ P SA P P L A +
Sbjct: 90 EAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAI 126
Score = 29.4 bits (66), Expect = 4.9
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
S + A P +A P P++A + P P +P +
Sbjct: 36 RSLVAEGAAGPVAKAAEQM------AAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEG 89
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
+ P SA P P L A +
Sbjct: 90 EAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAI 126
Score = 29.4 bits (66), Expect = 4.9
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 158 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
S + A P +A P P++A + P P +P +
Sbjct: 36 RSLVAEGAAGPVAKAAEQM------AAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEG 89
Query: 218 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
+ P SA P P L A +
Sbjct: 90 EAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAI 126
Score = 29.4 bits (66), Expect = 4.9
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 226
S + A P +A P P++A + P P +P +
Sbjct: 36 RSLVAEGAAGPVAKAAEQM------AAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEG 89
Query: 227 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
+ P SA P P L A +
Sbjct: 90 EAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAI 126
Score = 29.4 bits (66), Expect = 4.9
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 176 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 235
S + A P +A P P++A + P P +P +
Sbjct: 36 RSLVAEGAAGPVAKAAEQM------AAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEG 89
Query: 236 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
+ P SA P P L A +
Sbjct: 90 EAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAI 126
Score = 29.4 bits (66), Expect = 4.9
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 185 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
S + A P +A P P++A + P P +P +
Sbjct: 36 RSLVAEGAAGPVAKAAEQM------AAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEG 89
Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
+ P SA P P L A +
Sbjct: 90 EAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAI 126
Score = 29.4 bits (66), Expect = 4.9
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 194 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 253
S + A P +A P P++A + P P +P +
Sbjct: 36 RSLVAEGAAGPVAKAAEQM------AAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEG 89
Query: 254 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
+ P SA P P L A +
Sbjct: 90 EAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAI 126
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1,
2, 3, 4 family. These eukaryotic proteins recognize the
poly-A of mRNA and consists of four tandem RNA
recognition domains at the N-terminus (rrm: pfam00076)
followed by a PABP-specific domain (pfam00658) at the
C-terminus. The protein is involved in the transport of
mRNA's from the nucleus to the cytoplasm. There are four
paralogs in Homo sapiens which are expressed in testis
(GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ),
broadly expressed (SP:P11940_PABP1) and of unknown
tissue range (SP:Q15097_PABP2).
Length = 562
Score = 30.2 bits (68), Expect = 2.6
Identities = 24/123 (19%), Positives = 35/123 (28%), Gaps = 14/123 (11%)
Query: 25 LEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSS 79
L+P + + G P G G P + P PG
Sbjct: 378 LQPRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPT-----PMGPGGPL 432
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
P+ P +A P +A + + P + LP DLP P S G
Sbjct: 433 RPNGLAPMNAVRAP-SRNAQNAAQKPPMQPVMYPPNYQSLPLS---QDLPQPQSTASQGG 488
Query: 140 PSS 142
+
Sbjct: 489 QNK 491
Score = 29.8 bits (67), Expect = 3.4
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 14/121 (11%)
Query: 36 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSSAP 90
P + + G P G G P + P PG P
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPT-----PMGPGGPLRP 434
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
+ P +A P +A + + P + LP DLP P S G +
Sbjct: 435 NGLAPMNAVRAP-SRNAQNAAQKPPMQPVMYPPNYQSLPLS---QDLPQPQSTASQGGQN 490
Query: 151 S 151
Sbjct: 491 K 491
Score = 29.8 bits (67), Expect = 3.4
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 14/121 (11%)
Query: 45 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSSAP 99
P + + G P G G P + P PG P
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPT-----PMGPGGPLRP 434
Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 159
+ P +A P +A + + P + LP DLP P S G +
Sbjct: 435 NGLAPMNAVRAP-SRNAQNAAQKPPMQPVMYPPNYQSLPLS---QDLPQPQSTASQGGQN 490
Query: 160 S 160
Sbjct: 491 K 491
Score = 29.8 bits (67), Expect = 3.4
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 14/121 (11%)
Query: 54 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSSAP 108
P + + G P G G P + P PG P
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPT-----PMGPGGPLRP 434
Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 168
+ P +A P +A + + P + LP DLP P S G +
Sbjct: 435 NGLAPMNAVRAP-SRNAQNAAQKPPMQPVMYPPNYQSLPLS---QDLPQPQSTASQGGQN 490
Query: 169 S 169
Sbjct: 491 K 491
Score = 29.8 bits (67), Expect = 3.4
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 14/121 (11%)
Query: 63 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSSAP 117
P + + G P G G P + P PG P
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPT-----PMGPGGPLRP 434
Query: 118 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 177
+ P +A P +A + + P + LP DLP P S G +
Sbjct: 435 NGLAPMNAVRAP-SRNAQNAAQKPPMQPVMYPPNYQSLPLS---QDLPQPQSTASQGGQN 490
Query: 178 S 178
Sbjct: 491 K 491
Score = 29.8 bits (67), Expect = 3.4
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 14/121 (11%)
Query: 72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSSAP 126
P + + G P G G P + P PG P
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPT-----PMGPGGPLRP 434
Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
+ P +A P +A + + P + LP DLP P S G +
Sbjct: 435 NGLAPMNAVRAP-SRNAQNAAQKPPMQPVMYPPNYQSLPLS---QDLPQPQSTASQGGQN 490
Query: 187 S 187
Sbjct: 491 K 491
Score = 29.8 bits (67), Expect = 3.4
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 14/121 (11%)
Query: 81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSSAP 135
P + + G P G G P + P PG P
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPT-----PMGPGGPLRP 434
Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
+ P +A P +A + + P + LP DLP P S G +
Sbjct: 435 NGLAPMNAVRAP-SRNAQNAAQKPPMQPVMYPPNYQSLPLS---QDLPQPQSTASQGGQN 490
Query: 196 S 196
Sbjct: 491 K 491
Score = 29.8 bits (67), Expect = 3.4
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 14/121 (11%)
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSSAP 144
P + + G P G G P + P PG P
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPT-----PMGPGGPLRP 434
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
+ P +A P +A + + P + LP DLP P S G +
Sbjct: 435 NGLAPMNAVRAP-SRNAQNAAQKPPMQPVMYPPNYQSLPLS---QDLPQPQSTASQGGQN 490
Query: 205 S 205
Sbjct: 491 K 491
Score = 29.8 bits (67), Expect = 3.4
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 14/121 (11%)
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSSAP 153
P + + G P G G P + P PG P
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPT-----PMGPGGPLRP 434
Query: 154 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 213
+ P +A P +A + + P + LP DLP P S G +
Sbjct: 435 NGLAPMNAVRAP-SRNAQNAAQKPPMQPVMYPPNYQSLPLS---QDLPQPQSTASQGGQN 490
Query: 214 S 214
Sbjct: 491 K 491
Score = 29.8 bits (67), Expect = 3.4
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 14/121 (11%)
Query: 108 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSSAP 162
P + + G P G G P + P PG P
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPT-----PMGPGGPLRP 434
Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 222
+ P +A P +A + + P + LP DLP P S G +
Sbjct: 435 NGLAPMNAVRAP-SRNAQNAAQKPPMQPVMYPPNYQSLPLS---QDLPQPQSTASQGGQN 490
Query: 223 S 223
Sbjct: 491 K 491
Score = 29.8 bits (67), Expect = 3.4
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 14/121 (11%)
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSSAP 171
P + + G P G G P + P PG P
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPT-----PMGPGGPLRP 434
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
+ P +A P +A + + P + LP DLP P S G +
Sbjct: 435 NGLAPMNAVRAP-SRNAQNAAQKPPMQPVMYPPNYQSLPLS---QDLPQPQSTASQGGQN 490
Query: 232 S 232
Sbjct: 491 K 491
Score = 29.8 bits (67), Expect = 3.4
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 14/121 (11%)
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSSAP 180
P + + G P G G P + P PG P
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPT-----PMGPGGPLRP 434
Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
+ P +A P +A + + P + LP DLP P S G +
Sbjct: 435 NGLAPMNAVRAP-SRNAQNAAQKPPMQPVMYPPNYQSLPLS---QDLPQPQSTASQGGQN 490
Query: 241 S 241
Sbjct: 491 K 491
Score = 29.8 bits (67), Expect = 3.4
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 14/121 (11%)
Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSSAP 189
P + + G P G G P + P PG P
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPT-----PMGPGGPLRP 434
Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
+ P +A P +A + + P + LP DLP P S G +
Sbjct: 435 NGLAPMNAVRAP-SRNAQNAAQKPPMQPVMYPPNYQSLPLS---QDLPQPQSTASQGGQN 490
Query: 250 S 250
Sbjct: 491 K 491
Score = 29.8 bits (67), Expect = 3.4
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 14/121 (11%)
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSSAP 198
P + + G P G G P + P PG P
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPT-----PMGPGGPLRP 434
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
+ P +A P +A + + P + LP DLP P S G +
Sbjct: 435 NGLAPMNAVRAP-SRNAQNAAQKPPMQPVMYPPNYQSLPLS---QDLPQPQSTASQGGQN 490
Query: 259 S 259
Sbjct: 491 K 491
Score = 29.8 bits (67), Expect = 3.4
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 14/121 (11%)
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSSAP 207
P + + G P G G P + P PG P
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPT-----PMGPGGPLRP 434
Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
+ P +A P +A + + P + LP DLP P S G +
Sbjct: 435 NGLAPMNAVRAP-SRNAQNAAQKPPMQPVMYPPNYQSLPLS---QDLPQPQSTASQGGQN 490
Query: 268 S 268
Sbjct: 491 K 491
Score = 29.8 bits (67), Expect = 3.4
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 14/121 (11%)
Query: 162 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSSAP 216
P + + G P G G P + P PG P
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPT-----PMGPGGPLRP 434
Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 276
+ P +A P +A + + P + LP DLP P S G +
Sbjct: 435 NGLAPMNAVRAP-SRNAQNAAQKPPMQPVMYPPNYQSLPLS---QDLPQPQSTASQGGQN 490
Query: 277 S 277
Sbjct: 491 K 491
Score = 29.8 bits (67), Expect = 3.4
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 14/121 (11%)
Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-----PSSAPDLPGPSSAPDLPGPSSAP 225
P + + G P G G P + P PG P
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPT-----PMGPGGPLRP 434
Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
+ P +A P +A + + P + LP DLP P S G +
Sbjct: 435 NGLAPMNAVRAP-SRNAQNAAQKPPMQPVMYPPNYQSLPLS---QDLPQPQSTASQGGQN 490
Query: 286 S 286
Sbjct: 491 K 491
Score = 28.6 bits (64), Expect = 7.1
Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 8/83 (9%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
P +P P PG P+ P +A P +A + + P + L
Sbjct: 417 PRMSMMPTPMG----PGGPLRPNGLAPMNAVRAP-SRNAQNAAQKPPMQPVMYPPNYQSL 471
Query: 84 PGPSSAPDLPGPSSAPDLPGPSS 106
P DLP P S G +
Sbjct: 472 PLS---QDLPQPQSTASQGGQNK 491
>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 504
Score = 30.2 bits (68), Expect = 2.7
Identities = 21/96 (21%), Positives = 29/96 (30%), Gaps = 6/96 (6%)
Query: 25 LEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 84
LE L A + P+ AP S P +A
Sbjct: 331 LELALLHALLALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP---TAAATA 387
Query: 85 GPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAP 117
+ PD P AP+ + AP L P++AP
Sbjct: 388 AGAPLPDFDPRPRGPPAPEPARSAEAPPLVAPAAAP 423
Score = 29.4 bits (66), Expect = 4.5
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 44 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 101
A + P+ AP S P +A + PD
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP---TAAATAAGAPLPDFDP 397
Query: 102 -PGPSSAPDLPGPSSAPDLPGPSSAP 126
P AP+ + AP L P++AP
Sbjct: 398 RPRGPPAPEPARSAEAPPLVAPAAAP 423
Score = 29.4 bits (66), Expect = 4.5
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 53 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 110
A + P+ AP S P +A + PD
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP---TAAATAAGAPLPDFDP 397
Query: 111 -PGPSSAPDLPGPSSAPDLPGPSSAP 135
P AP+ + AP L P++AP
Sbjct: 398 RPRGPPAPEPARSAEAPPLVAPAAAP 423
Score = 29.4 bits (66), Expect = 4.5
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 62 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 119
A + P+ AP S P +A + PD
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP---TAAATAAGAPLPDFDP 397
Query: 120 -PGPSSAPDLPGPSSAPDLPGPSSAP 144
P AP+ + AP L P++AP
Sbjct: 398 RPRGPPAPEPARSAEAPPLVAPAAAP 423
Score = 29.4 bits (66), Expect = 4.5
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 71 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 128
A + P+ AP S P +A + PD
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP---TAAATAAGAPLPDFDP 397
Query: 129 -PGPSSAPDLPGPSSAPDLPGPSSAP 153
P AP+ + AP L P++AP
Sbjct: 398 RPRGPPAPEPARSAEAPPLVAPAAAP 423
Score = 29.4 bits (66), Expect = 4.5
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 80 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 137
A + P+ AP S P +A + PD
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP---TAAATAAGAPLPDFDP 397
Query: 138 -PGPSSAPDLPGPSSAPDLPGPSSAP 162
P AP+ + AP L P++AP
Sbjct: 398 RPRGPPAPEPARSAEAPPLVAPAAAP 423
Score = 29.4 bits (66), Expect = 4.5
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 89 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 146
A + P+ AP S P +A + PD
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP---TAAATAAGAPLPDFDP 397
Query: 147 -PGPSSAPDLPGPSSAPDLPGPSSAP 171
P AP+ + AP L P++AP
Sbjct: 398 RPRGPPAPEPARSAEAPPLVAPAAAP 423
Score = 29.4 bits (66), Expect = 4.5
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 98 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 155
A + P+ AP S P +A + PD
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP---TAAATAAGAPLPDFDP 397
Query: 156 -PGPSSAPDLPGPSSAPDLPGPSSAP 180
P AP+ + AP L P++AP
Sbjct: 398 RPRGPPAPEPARSAEAPPLVAPAAAP 423
Score = 29.4 bits (66), Expect = 4.5
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 164
A + P+ AP S P +A + PD
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP---TAAATAAGAPLPDFDP 397
Query: 165 -PGPSSAPDLPGPSSAPDLPGPSSAP 189
P AP+ + AP L P++AP
Sbjct: 398 RPRGPPAPEPARSAEAPPLVAPAAAP 423
Score = 29.4 bits (66), Expect = 4.5
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 173
A + P+ AP S P +A + PD
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP---TAAATAAGAPLPDFDP 397
Query: 174 -PGPSSAPDLPGPSSAPDLPGPSSAP 198
P AP+ + AP L P++AP
Sbjct: 398 RPRGPPAPEPARSAEAPPLVAPAAAP 423
Score = 29.4 bits (66), Expect = 4.5
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 182
A + P+ AP S P +A + PD
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP---TAAATAAGAPLPDFDP 397
Query: 183 -PGPSSAPDLPGPSSAPDLPGPSSAP 207
P AP+ + AP L P++AP
Sbjct: 398 RPRGPPAPEPARSAEAPPLVAPAAAP 423
Score = 29.4 bits (66), Expect = 4.5
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 191
A + P+ AP S P +A + PD
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP---TAAATAAGAPLPDFDP 397
Query: 192 -PGPSSAPDLPGPSSAPDLPGPSSAP 216
P AP+ + AP L P++AP
Sbjct: 398 RPRGPPAPEPARSAEAPPLVAPAAAP 423
Score = 29.4 bits (66), Expect = 4.5
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 200
A + P+ AP S P +A + PD
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP---TAAATAAGAPLPDFDP 397
Query: 201 -PGPSSAPDLPGPSSAPDLPGPSSAP 225
P AP+ + AP L P++AP
Sbjct: 398 RPRGPPAPEPARSAEAPPLVAPAAAP 423
Score = 29.4 bits (66), Expect = 4.5
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 209
A + P+ AP S P +A + PD
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP---TAAATAAGAPLPDFDP 397
Query: 210 -PGPSSAPDLPGPSSAPDLPGPSSAP 234
P AP+ + AP L P++AP
Sbjct: 398 RPRGPPAPEPARSAEAPPLVAPAAAP 423
Score = 29.4 bits (66), Expect = 4.5
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 161 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 218
A + P+ AP S P +A + PD
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP---TAAATAAGAPLPDFDP 397
Query: 219 -PGPSSAPDLPGPSSAPDLPGPSSAP 243
P AP+ + AP L P++AP
Sbjct: 398 RPRGPPAPEPARSAEAPPLVAPAAAP 423
Score = 29.4 bits (66), Expect = 4.5
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 227
A + P+ AP S P +A + PD
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP---TAAATAAGAPLPDFDP 397
Query: 228 -PGPSSAPDLPGPSSAPDLPGPSSAP 252
P AP+ + AP L P++AP
Sbjct: 398 RPRGPPAPEPARSAEAPPLVAPAAAP 423
Score = 29.4 bits (66), Expect = 4.5
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 236
A + P+ AP S P +A + PD
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP---TAAATAAGAPLPDFDP 397
Query: 237 -PGPSSAPDLPGPSSAPDLPGPSSAP 261
P AP+ + AP L P++AP
Sbjct: 398 RPRGPPAPEPARSAEAPPLVAPAAAP 423
Score = 29.4 bits (66), Expect = 4.5
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-- 245
A + P+ AP S P +A + PD
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP---TAAATAAGAPLPDFDP 397
Query: 246 -PGPSSAPDLPGPSSAPDLPGPSSAP 270
P AP+ + AP L P++AP
Sbjct: 398 RPRGPPAPEPARSAEAPPLVAPAAAP 423
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 29.7 bits (67), Expect = 2.7
Identities = 32/214 (14%), Positives = 49/214 (22%), Gaps = 11/214 (5%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
P P + P + P P+ A P+ +P P + LP +
Sbjct: 51 PSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPA-ANPPATFALPAGPAG 109
Query: 90 PDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
P + PG +P + P S + L AP S
Sbjct: 110 PTIQTEPGQLYPVQVPVMVTQN--PANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQS 167
Query: 147 PG---PSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
S P + P + D G + L
Sbjct: 168 AQKNDESQLQQQPNGETPPQQTDGAGDDESEALVRLREADGTLEQRIKGAEGGGAMKVLK 227
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 235
P + + G S + G D
Sbjct: 228 QPKKQAKSSKRRTIAQIDGIDSDDEGDGSDDDDD 261
Score = 29.3 bits (66), Expect = 4.6
Identities = 32/216 (14%), Positives = 50/216 (23%), Gaps = 11/216 (5%)
Query: 10 FTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 69
+ + P V + P P P+ A P+ +P P + LP
Sbjct: 49 WDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPA-ANPPATFALPAGP 107
Query: 70 SAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
+ P + PG +P + P S + L AP S
Sbjct: 108 AGPTIQTEPGQLYPVQVPVMVTQN--PANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQ 165
Query: 127 DLPG---PSSAPDLPGPSSAPD--LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
S P + P + D G +
Sbjct: 166 QSAQKNDESQLQQQPNGETPPQQTDGAGDDESEALVRLREADGTLEQRIKGAEGGGAMKV 225
Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 217
L P + + G S + G D
Sbjct: 226 LKQPKKQAKSSKRRTIAQIDGIDSDDEGDGSDDDDD 261
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 29.9 bits (67), Expect = 2.7
Identities = 34/168 (20%), Positives = 49/168 (29%), Gaps = 13/168 (7%)
Query: 20 VTERPLEPDLPGPSSAPDLPGPSS--APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 77
V + LE + P +A + +S P PG + PD + +
Sbjct: 291 VVDEALERE-PAELAAAAVASAASAVGPVGPGEPNQPD-DVAEAVKAEVAEVTDEVAAES 348
Query: 78 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP--DLPGPSSAPDLPG--PSS 133
S P +S D+ +A D S+AP+ P S
Sbjct: 349 VVQVADRDGESTPA-VEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASE 407
Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
A D P P+ P P P + GP P P D
Sbjct: 408 AHDETEPE-VPEKAAPIPDPAKPDELAVA---GPGDDPAEPDGIRRQD 451
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 84
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 93
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 49 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 102
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 58 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 111
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 129
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 138
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 94 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 156
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 165
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 273
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 282
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
Score = 29.5 bits (67), Expect = 3.7
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 238 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
G S++ P++A + + A + + A ++ PD+P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
>gnl|CDD|220401 pfam09786, CytochromB561_N, Cytochrome B561, N terminal. Members
of this family are found in the N terminal region of
cytochrome B561, as well as in various other putative
uncharacterized proteins.
Length = 559
Score = 29.4 bits (66), Expect = 4.5
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Query: 37 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 96
L + S A P P+S P +S P +PG SS D P S++P
Sbjct: 100 LLGVKAKDSQFTVVSQAKKSP-PASKTSTPMNTSEPLVPGHSSFSDSPSRSASPSRKFSP 158
Query: 97 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
S+ P P S + PS + L +S+
Sbjct: 159 SSTIQQSPQLTPSNKPASPSSSYQSPSYSSSLGPVNSSG 197
Score = 29.4 bits (66), Expect = 4.5
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Query: 64 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 123
L + S A P P+S P +S P +PG SS D P S++P
Sbjct: 100 LLGVKAKDSQFTVVSQAKKSP-PASKTSTPMNTSEPLVPGHSSFSDSPSRSASPSRKFSP 158
Query: 124 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 162
S+ P P S + PS + L +S+
Sbjct: 159 SSTIQQSPQLTPSNKPASPSSSYQSPSYSSSLGPVNSSG 197
Score = 29.4 bits (66), Expect = 4.5
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Query: 91 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
L + S A P P+S P +S P +PG SS D P S++P
Sbjct: 100 LLGVKAKDSQFTVVSQAKKSP-PASKTSTPMNTSEPLVPGHSSFSDSPSRSASPSRKFSP 158
Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
S+ P P S + PS + L +S+
Sbjct: 159 SSTIQQSPQLTPSNKPASPSSSYQSPSYSSSLGPVNSSG 197
Score = 29.4 bits (66), Expect = 4.5
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Query: 118 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 177
L + S A P P+S P +S P +PG SS D P S++P
Sbjct: 100 LLGVKAKDSQFTVVSQAKKSP-PASKTSTPMNTSEPLVPGHSSFSDSPSRSASPSRKFSP 158
Query: 178 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
S+ P P S + PS + L +S+
Sbjct: 159 SSTIQQSPQLTPSNKPASPSSSYQSPSYSSSLGPVNSSG 197
Score = 29.4 bits (66), Expect = 4.5
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
L + S A P P+S P +S P +PG SS D P S++P
Sbjct: 100 LLGVKAKDSQFTVVSQAKKSP-PASKTSTPMNTSEPLVPGHSSFSDSPSRSASPSRKFSP 158
Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
S+ P P S + PS + L +S+
Sbjct: 159 SSTIQQSPQLTPSNKPASPSSSYQSPSYSSSLGPVNSSG 197
Score = 29.4 bits (66), Expect = 4.5
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
L + S A P P+S P +S P +PG SS D P S++P
Sbjct: 100 LLGVKAKDSQFTVVSQAKKSP-PASKTSTPMNTSEPLVPGHSSFSDSPSRSASPSRKFSP 158
Query: 232 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
S+ P P S + PS + L +S+
Sbjct: 159 SSTIQQSPQLTPSNKPASPSSSYQSPSYSSSLGPVNSSG 197
Score = 29.0 bits (65), Expect = 5.4
Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 1/102 (0%)
Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
L + S A P P+S P +S P +PG SS D P S++P
Sbjct: 100 LLGVKAKDSQFTVVSQAKKSP-PASKTSTPMNTSEPLVPGHSSFSDSPSRSASPSRKFSP 158
Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGS 300
S+ P P S + PS + L +S+ S
Sbjct: 159 SSTIQQSPQLTPSNKPASPSSSYQSPSYSSSLGPVNSSGNRS 200
Score = 29.0 bits (65), Expect = 5.4
Identities = 21/77 (27%), Positives = 31/77 (40%)
Query: 32 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 91
P+S P +S P +PG SS D P S++P S+ P P S +
Sbjct: 121 PASKTSTPMNTSEPLVPGHSSFSDSPSRSASPSRKFSPSSTIQQSPQLTPSNKPASPSSS 180
Query: 92 LPGPSSAPDLPGPSSAP 108
PS + L +S+
Sbjct: 181 YQSPSYSSSLGPVNSSG 197
Score = 29.0 bits (65), Expect = 6.7
Identities = 19/95 (20%), Positives = 31/95 (32%)
Query: 5 FDKHVFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 64
+ + + P +S P +PG SS D P S++P S+
Sbjct: 103 VKAKDSQFTVVSQAKKSPPASKTSTPMNTSEPLVPGHSSFSDSPSRSASPSRKFSPSSTI 162
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
P P S + PS + L +S+
Sbjct: 163 QQSPQLTPSNKPASPSSSYQSPSYSSSLGPVNSSG 197
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and
is typically between 384 and 430 amino acids in length.
Length = 414
Score = 29.4 bits (66), Expect = 4.6
Identities = 26/144 (18%), Positives = 35/144 (24%), Gaps = 4/144 (2%)
Query: 30 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
G P S +P G P + S
Sbjct: 195 TNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKS- 253
Query: 90 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLP 147
P P D P AP + P S + + +P L PS + P
Sbjct: 254 -SAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESP 312
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAP 171
P ++P P P S P
Sbjct: 313 KPLASPGKSPRDPLSPRPKPQSPP 336
Score = 29.4 bits (66), Expect = 4.6
Identities = 26/144 (18%), Positives = 35/144 (24%), Gaps = 4/144 (2%)
Query: 39 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 98
G P S +P G P + S
Sbjct: 195 TNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKS- 253
Query: 99 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLP 156
P P D P AP + P S + + +P L PS + P
Sbjct: 254 -SAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESP 312
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAP 180
P ++P P P S P
Sbjct: 313 KPLASPGKSPRDPLSPRPKPQSPP 336
Score = 29.4 bits (66), Expect = 4.6
Identities = 26/144 (18%), Positives = 35/144 (24%), Gaps = 4/144 (2%)
Query: 48 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 107
G P S +P G P + S
Sbjct: 195 TNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKS- 253
Query: 108 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLP 165
P P D P AP + P S + + +P L PS + P
Sbjct: 254 -SAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESP 312
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAP 189
P ++P P P S P
Sbjct: 313 KPLASPGKSPRDPLSPRPKPQSPP 336
Score = 29.4 bits (66), Expect = 4.6
Identities = 26/144 (18%), Positives = 35/144 (24%), Gaps = 4/144 (2%)
Query: 57 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 116
G P S +P G P + S
Sbjct: 195 TNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKS- 253
Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLP 174
P P D P AP + P S + + +P L PS + P
Sbjct: 254 -SAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESP 312
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAP 198
P ++P P P S P
Sbjct: 313 KPLASPGKSPRDPLSPRPKPQSPP 336
Score = 29.4 bits (66), Expect = 4.6
Identities = 26/144 (18%), Positives = 35/144 (24%), Gaps = 4/144 (2%)
Query: 66 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
G P S +P G P + S
Sbjct: 195 TNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKS- 253
Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLP 183
P P D P AP + P S + + +P L PS + P
Sbjct: 254 -SAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESP 312
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAP 207
P ++P P P S P
Sbjct: 313 KPLASPGKSPRDPLSPRPKPQSPP 336
Score = 29.4 bits (66), Expect = 4.6
Identities = 26/144 (18%), Positives = 35/144 (24%), Gaps = 4/144 (2%)
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
G P S +P G P + S
Sbjct: 195 TNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKS- 253
Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLP 201
P P D P AP + P S + + +P L PS + P
Sbjct: 254 -SAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESP 312
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAP 225
P ++P P P S P
Sbjct: 313 KPLASPGKSPRDPLSPRPKPQSPP 336
Score = 29.4 bits (66), Expect = 4.6
Identities = 26/144 (18%), Positives = 35/144 (24%), Gaps = 4/144 (2%)
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
G P S +P G P + S
Sbjct: 195 TNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKS- 253
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLP 210
P P D P AP + P S + + +P L PS + P
Sbjct: 254 -SAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESP 312
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAP 234
P ++P P P S P
Sbjct: 313 KPLASPGKSPRDPLSPRPKPQSPP 336
Score = 29.4 bits (66), Expect = 4.6
Identities = 26/144 (18%), Positives = 35/144 (24%), Gaps = 4/144 (2%)
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
G P S +P G P + S
Sbjct: 195 TNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKS- 253
Query: 162 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLP 219
P P D P AP + P S + + +P L PS + P
Sbjct: 254 -SAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESP 312
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAP 243
P ++P P P S P
Sbjct: 313 KPLASPGKSPRDPLSPRPKPQSPP 336
Score = 29.4 bits (66), Expect = 4.6
Identities = 26/144 (18%), Positives = 35/144 (24%), Gaps = 4/144 (2%)
Query: 129 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
G P S +P G P + S
Sbjct: 195 TNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKS- 253
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLP 246
P P D P AP + P S + + +P L PS + P
Sbjct: 254 -SAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESP 312
Query: 247 GPSSAPDLPGPSSAPDLPGPSSAP 270
P ++P P P S P
Sbjct: 313 KPLASPGKSPRDPLSPRPKPQSPP 336
Score = 29.4 bits (66), Expect = 4.6
Identities = 26/144 (18%), Positives = 35/144 (24%), Gaps = 4/144 (2%)
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
G P S +P G P + S
Sbjct: 195 TNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKS- 253
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLP 255
P P D P AP + P S + + +P L PS + P
Sbjct: 254 -SAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESP 312
Query: 256 GPSSAPDLPGPSSAPDLPGPSSAP 279
P ++P P P S P
Sbjct: 313 KPLASPGKSPRDPLSPRPKPQSPP 336
Score = 29.4 bits (66), Expect = 4.6
Identities = 26/144 (18%), Positives = 35/144 (24%), Gaps = 4/144 (2%)
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
G P S +P G P + S
Sbjct: 195 TNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKS- 253
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLP 264
P P D P AP + P S + + +P L PS + P
Sbjct: 254 -SAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESP 312
Query: 265 GPSSAPDLPGPSSAPDLPGPSSAP 288
P ++P P P S P
Sbjct: 313 KPLASPGKSPRDPLSPRPKPQSPP 336
Score = 29.0 bits (65), Expect = 5.0
Identities = 27/141 (19%), Positives = 36/141 (25%), Gaps = 4/141 (2%)
Query: 24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
E G P S +P G P + S
Sbjct: 198 FKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKS--SA 255
Query: 84 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPGPS 141
P P D P AP + P S + + +P L PS + P P
Sbjct: 256 PKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESPKPL 315
Query: 142 SAPDLPGPSSAPDLPGPSSAP 162
++P P P S P
Sbjct: 316 ASPGKSPRDPLSPRPKPQSPP 336
>gnl|CDD|177328 PHA01929, PHA01929, putative scaffolding protein.
Length = 306
Score = 28.9 bits (64), Expect = 5.4
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 19 TVTERPLEPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPG 76
T E+ L P L G ++ P P+ P+ AP PG AP L P+ P P
Sbjct: 2 TQNEQQLPPGLAGLVANVPPAAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQ-PV 60
Query: 77 PSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSS 115
P+SA AP P P++ P A ++P P +
Sbjct: 61 PTSAMTPHVVQQAPAQPAPAAPPAAGAALPEALEVPPPPA 100
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 28.8 bits (63), Expect = 7.1
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
++A PS + A P+ A P ++A P+ A P ++AP
Sbjct: 203 AAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAA----PAKAAAAPAKAAAP-- 256
Query: 183 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
P+ A P ++AP P+ A P ++AP P ++AP P+ A P ++A
Sbjct: 257 --PAKAAAPPAKAAAP----PAKAAAPPAKAAAP--PAKAAAP----PAKAAAAPAKAAA 304
Query: 243 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
P+ A P ++AP P ++AP P+ A P ++AP ++ V
Sbjct: 305 A----PAKAAAAPAKAAAP--PAKAAAP----PAKAATPPAKAAAPPAKAAAAPV 349
Score = 28.4 bits (62), Expect = 7.5
Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 28/166 (16%)
Query: 33 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 92
++A PS + A P+ A P ++A P+ A P ++AP
Sbjct: 203 AAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAA----PAKAAAAPAKAAAP-- 256
Query: 93 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
P+ A P ++AP P+ A P ++AP P ++AP P+ A P ++A
Sbjct: 257 --PAKAAAPPAKAAAP----PAKAAAPPAKAAAP--PAKAAAP----PAKAAAAPAKAAA 304
Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
P+ A P ++AP P ++AP P+ A P ++AP
Sbjct: 305 A----PAKAAAAPAKAAAP--PAKAAAP----PAKAATPPAKAAAP 340
Score = 28.4 bits (62), Expect = 7.5
Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 28/166 (16%)
Query: 42 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 101
++A PS + A P+ A P ++A P+ A P ++AP
Sbjct: 203 AAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAA----PAKAAAAPAKAAAP-- 256
Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
P+ A P ++AP P+ A P ++AP P ++AP P+ A P ++A
Sbjct: 257 --PAKAAAPPAKAAAP----PAKAAAPPAKAAAP--PAKAAAP----PAKAAAAPAKAAA 304
Query: 162 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
P+ A P ++AP P ++AP P+ A P ++AP
Sbjct: 305 A----PAKAAAAPAKAAAP--PAKAAAP----PAKAATPPAKAAAP 340
Score = 28.4 bits (62), Expect = 7.5
Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 28/166 (16%)
Query: 69 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 128
++A PS + A P+ A P ++A P+ A P ++AP
Sbjct: 203 AAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAA----PAKAAAAPAKAAAP-- 256
Query: 129 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
P+ A P ++AP P+ A P ++AP P ++AP P+ A P ++A
Sbjct: 257 --PAKAAAPPAKAAAP----PAKAAAPPAKAAAP--PAKAAAP----PAKAAAAPAKAAA 304
Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
P+ A P ++AP P ++AP P+ A P ++AP
Sbjct: 305 A----PAKAAAAPAKAAAP--PAKAAAP----PAKAATPPAKAAAP 340
Score = 28.4 bits (62), Expect = 7.5
Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 28/166 (16%)
Query: 78 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 137
++A PS + A P+ A P ++A P+ A P ++AP
Sbjct: 203 AAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAA----PAKAAAAPAKAAAP-- 256
Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
P+ A P ++AP P+ A P ++AP P ++AP P+ A P ++A
Sbjct: 257 --PAKAAAPPAKAAAP----PAKAAAPPAKAAAP--PAKAAAP----PAKAAAAPAKAAA 304
Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
P+ A P ++AP P ++AP P+ A P ++AP
Sbjct: 305 A----PAKAAAAPAKAAAP--PAKAAAP----PAKAATPPAKAAAP 340
Score = 28.4 bits (62), Expect = 7.5
Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 28/166 (16%)
Query: 87 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
++A PS + A P+ A P ++A P+ A P ++AP
Sbjct: 203 AAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAA----PAKAAAAPAKAAAP-- 256
Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
P+ A P ++AP P+ A P ++AP P ++AP P+ A P ++A
Sbjct: 257 --PAKAAAPPAKAAAP----PAKAAAPPAKAAAP--PAKAAAP----PAKAAAAPAKAAA 304
Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
P+ A P ++AP P ++AP P+ A P ++AP
Sbjct: 305 A----PAKAAAAPAKAAAP--PAKAAAP----PAKAATPPAKAAAP 340
Score = 28.4 bits (62), Expect = 7.5
Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 28/166 (16%)
Query: 96 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 155
++A PS + A P+ A P ++A P+ A P ++AP
Sbjct: 203 AAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAA----PAKAAAAPAKAAAP-- 256
Query: 156 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 215
P+ A P ++AP P+ A P ++AP P ++AP P+ A P ++A
Sbjct: 257 --PAKAAAPPAKAAAP----PAKAAAPPAKAAAP--PAKAAAP----PAKAAAAPAKAAA 304
Query: 216 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
P+ A P ++AP P ++AP P+ A P ++AP
Sbjct: 305 A----PAKAAAAPAKAAAP--PAKAAAP----PAKAATPPAKAAAP 340
Score = 28.4 bits (62), Expect = 7.5
Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 28/166 (16%)
Query: 105 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 164
++A PS + A P+ A P ++A P+ A P ++AP
Sbjct: 203 AAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAA----PAKAAAAPAKAAAP-- 256
Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
P+ A P ++AP P+ A P ++AP P ++AP P+ A P ++A
Sbjct: 257 --PAKAAAPPAKAAAP----PAKAAAPPAKAAAP--PAKAAAP----PAKAAAAPAKAAA 304
Query: 225 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
P+ A P ++AP P ++AP P+ A P ++AP
Sbjct: 305 A----PAKAAAAPAKAAAP--PAKAAAP----PAKAATPPAKAAAP 340
Score = 28.4 bits (62), Expect = 7.5
Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 28/166 (16%)
Query: 114 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 173
++A PS + A P+ A P ++A P+ A P ++AP
Sbjct: 203 AAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAA----PAKAAAAPAKAAAP-- 256
Query: 174 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 233
P+ A P ++AP P+ A P ++AP P ++AP P+ A P ++A
Sbjct: 257 --PAKAAAPPAKAAAP----PAKAAAPPAKAAAP--PAKAAAP----PAKAAAAPAKAAA 304
Query: 234 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 279
P+ A P ++AP P ++AP P+ A P ++AP
Sbjct: 305 A----PAKAAAAPAKAAAP--PAKAAAP----PAKAATPPAKAAAP 340
>gnl|CDD|222783 PHA00350, PHA00350, putative assembly protein.
Length = 399
Score = 28.3 bits (63), Expect = 8.2
Identities = 11/64 (17%), Positives = 15/64 (23%), Gaps = 3/64 (4%)
Query: 29 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
S + P S P P + P P P G + + P
Sbjct: 250 KVSDSVKTPAEHQAQTPSGVPTVSGPARPAQTGK---PAPVLGPLGDGCTGSGCGNEPYH 306
Query: 89 APDL 92
L
Sbjct: 307 DFSL 310
Score = 28.3 bits (63), Expect = 8.2
Identities = 11/64 (17%), Positives = 15/64 (23%), Gaps = 3/64 (4%)
Query: 65 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
S + P S P P + P P P G + + P
Sbjct: 250 KVSDSVKTPAEHQAQTPSGVPTVSGPARPAQTGK---PAPVLGPLGDGCTGSGCGNEPYH 306
Query: 125 APDL 128
L
Sbjct: 307 DFSL 310
Score = 28.3 bits (63), Expect = 8.2
Identities = 11/64 (17%), Positives = 15/64 (23%), Gaps = 3/64 (4%)
Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
S + P S P P + P P P G + + P
Sbjct: 250 KVSDSVKTPAEHQAQTPSGVPTVSGPARPAQTGK---PAPVLGPLGDGCTGSGCGNEPYH 306
Query: 161 APDL 164
L
Sbjct: 307 DFSL 310
Score = 28.3 bits (63), Expect = 8.2
Identities = 11/64 (17%), Positives = 15/64 (23%), Gaps = 3/64 (4%)
Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
S + P S P P + P P P G + + P
Sbjct: 250 KVSDSVKTPAEHQAQTPSGVPTVSGPARPAQTGK---PAPVLGPLGDGCTGSGCGNEPYH 306
Query: 197 APDL 200
L
Sbjct: 307 DFSL 310
Score = 28.3 bits (63), Expect = 8.2
Identities = 11/64 (17%), Positives = 15/64 (23%), Gaps = 3/64 (4%)
Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
S + P S P P + P P P G + + P
Sbjct: 250 KVSDSVKTPAEHQAQTPSGVPTVSGPARPAQTGK---PAPVLGPLGDGCTGSGCGNEPYH 306
Query: 233 APDL 236
L
Sbjct: 307 DFSL 310
Score = 28.3 bits (63), Expect = 8.2
Identities = 11/64 (17%), Positives = 15/64 (23%), Gaps = 3/64 (4%)
Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
S + P S P P + P P P G + + P
Sbjct: 250 KVSDSVKTPAEHQAQTPSGVPTVSGPARPAQTGK---PAPVLGPLGDGCTGSGCGNEPYH 306
Query: 269 APDL 272
L
Sbjct: 307 DFSL 310
>gnl|CDD|112890 pfam04094, DUF390, Protein of unknown function (DUF390). This is a
family of long proteins currently only found in the rice
genome. They have no known function. However they may be
some kind of transposable element.
Length = 843
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 31 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 90 PDLPGPSSAP 99
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 40 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 98
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 99 PDLPGPSSAP 108
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 49 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 107
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 108 PDLPGPSSAP 117
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 58 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 116
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 117 PDLPGPSSAP 126
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 67 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 126 PDLPGPSSAP 135
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 76 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 135 PDLPGPSSAP 144
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 85 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 144 PDLPGPSSAP 153
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 94 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 153 PDLPGPSSAP 162
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 162 PDLPGPSSAP 171
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 171 PDLPGPSSAP 180
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 180 PDLPGPSSAP 189
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 189 PDLPGPSSAP 198
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 198 PDLPGPSSAP 207
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 207 PDLPGPSSAP 216
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 215
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 216 PDLPGPSSAP 225
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 225 PDLPGPSSAP 234
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 233
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 234 PDLPGPSSAP 243
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 243 PDLPGPSSAP 252
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 252 PDLPGPSSAP 261
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 202 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 261 PDLPGPSSAP 270
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 270 PDLPGPSSAP 279
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
Score = 28.6 bits (63), Expect = 8.7
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSA 278
P + D +S + A P PS A D P P APD P PS
Sbjct: 312 APDPSGDAAATTSEAAGDEAAGALLGPDPSGDAQDEPAPGGAPDSGTSIGGPSRAAPSPR 371
Query: 279 PDLPGPSSAP 288
P PS+AP
Sbjct: 372 RLFPLPSAAP 381
>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein;
Provisional.
Length = 418
Score = 28.3 bits (63), Expect = 9.9
Identities = 28/164 (17%), Positives = 39/164 (23%), Gaps = 8/164 (4%)
Query: 13 ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSA----PDL-PGPSSAPDLPGPSSAPDLPG 67
S P + +A DL S P P A P
Sbjct: 255 GQLTSSAFMLNSSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPPP 314
Query: 68 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 127
P P + P + + P + + P+ + S PG S A
Sbjct: 315 PVRRPRVKHPEAGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAA 374
Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
P DL P +SAP+ P
Sbjct: 375 SSFLEDDDFGSPPL---DLTTSLRHMPSPSVTSAPEPPSIPLTY 415
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.307 0.133 0.409
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,564,244
Number of extensions: 2357908
Number of successful extensions: 12945
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6416
Number of HSP's successfully gapped: 2021
Length of query: 448
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 348
Effective length of database: 6,502,202
Effective search space: 2262766296
Effective search space used: 2262766296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 61 (27.4 bits)