Query psy16324
Match_columns 251
No_of_seqs 60 out of 62
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 18:28:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zxe_G FXYD10, phospholemman-l 49.8 13 0.00043 28.2 3.1 37 207-246 13-49 (74)
2 2jp3_A FXYD domain-containing 48.2 8.2 0.00028 28.7 1.8 35 207-244 11-45 (67)
3 3arc_F Cytochrome B559 subunit 46.7 13 0.00045 25.5 2.5 21 214-234 18-38 (44)
4 2jo1_A Phospholemman; FXYD1, N 39.3 13 0.00045 27.9 1.7 34 208-244 11-44 (72)
5 3arc_I Photosystem II reaction 26.9 65 0.0022 21.5 3.3 16 57-75 14-29 (38)
6 2iu1_A EIF5, eukaryotic transl 24.5 26 0.00089 30.1 1.4 10 8-17 151-160 (208)
7 1q90_R Cytochrome B6-F complex 21.6 1.1E+02 0.0037 21.0 3.8 23 54-76 21-43 (49)
8 3bo0_B Preprotein translocase 15.4 57 0.0019 22.6 1.2 22 46-67 36-57 (65)
9 1pw4_A Glycerol-3-phosphate tr 14.7 1.4E+02 0.0049 25.0 3.8 9 63-71 270-278 (451)
10 2rr3_B OSBP, oxysterol-binding 14.7 52 0.0018 22.8 0.8 10 13-22 9-18 (47)
No 1
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=49.78 E-value=13 Score=28.16 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=23.7
Q ss_pred ecchhhhHHHHHHHhhhhHHHHHHHHHhhhhhccCCcCCC
Q psy16324 207 KYNWDDNLRYLILALVVPIVLFFGSLTILGYWYCPRKSKV 246 (251)
Q Consensus 207 r~d~d~t~~~Li~a~~VP~vlFvvS~i~L~~~~C~~~~k~ 246 (251)
.|||+.- =+-.+++-.|+|++++++|+--.|.|..+.
T Consensus 13 ~YDY~tL---RigGLifA~vLfi~GI~iilS~kcrCk~~q 49 (74)
T 2zxe_G 13 TYDYYRL---RVVGLIVAAVLCVIGIIILLAGKCRCKFNQ 49 (74)
T ss_dssp CCCHHHH---HHHHHHHHHHHHHHHHHHHTTTC-------
T ss_pred ccchHHh---eeccchhHHHHHHHHHHHHHcCccccCCCC
Confidence 3775544 356777888999999999999999875443
No 2
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=48.18 E-value=8.2 Score=28.67 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=26.9
Q ss_pred ecchhhhHHHHHHHhhhhHHHHHHHHHhhhhhccCCcC
Q psy16324 207 KYNWDDNLRYLILALVVPIVLFFGSLTILGYWYCPRKS 244 (251)
Q Consensus 207 r~d~d~t~~~Li~a~~VP~vlFvvS~i~L~~~~C~~~~ 244 (251)
.|||+.. =+-.+++-.|+|++++++|+--.|.|+.
T Consensus 11 ~YDY~tL---RigGLifA~vLfi~GI~iilS~kcrCk~ 45 (67)
T 2jp3_A 11 YYDWESL---QLGGLIFGGLLCIAGIALALSGKCKCRR 45 (67)
T ss_dssp GGGGHHH---HHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred ccchHHh---eecchhhHHHHHHHHHHHHHcCcccccC
Confidence 3775544 3567777889999999999998898755
No 3
>3arc_F Cytochrome B559 subunit beta; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_F* 3a0b_F* 3a0h_F* 1w5c_F* 3kzi_F* 3bz1_F* 1s5l_F* 2axt_F* 3bz2_F* 3prq_F* 3prr_F*
Probab=46.70 E-value=13 Score=25.50 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=16.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHh
Q psy16324 214 LRYLILALVVPIVLFFGSLTI 234 (251)
Q Consensus 214 ~~~Li~a~~VP~vlFvvS~i~ 234 (251)
..--+|+++||.|.|+-|...
T Consensus 18 RWlAvH~lavPtVfflGai~A 38 (44)
T 3arc_F 18 RWVAVHTLAVPTIFFLGAIAA 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhhhhcccccceeeccHHHH
Confidence 334689999999999887654
No 4
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=39.31 E-value=13 Score=27.92 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=26.2
Q ss_pred cchhhhHHHHHHHhhhhHHHHHHHHHhhhhhccCCcC
Q psy16324 208 YNWDDNLRYLILALVVPIVLFFGSLTILGYWYCPRKS 244 (251)
Q Consensus 208 ~d~d~t~~~Li~a~~VP~vlFvvS~i~L~~~~C~~~~ 244 (251)
||++.. =+-.+++-.|+|++++++|+--.|.|..
T Consensus 11 YDY~tL---RiGGLifA~vLfi~GI~iilS~KckCk~ 44 (72)
T 2jo1_A 11 YDYQSL---QIGGLVIAGILFILGILIVLSRRCRCKF 44 (72)
T ss_dssp CSTHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHh---hccchHHHHHHHHHHHHHHHcCccccCC
Confidence 775544 3567777889999999999998897643
No 5
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=26.93 E-value=65 Score=21.52 Aligned_cols=16 Identities=38% Similarity=0.469 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhhhhhhchh
Q psy16324 57 ACLSAFAFLFLIPFIIEPA 75 (251)
Q Consensus 57 avlSlfafLFLvPfvvdPA 75 (251)
-..|+|+|+|| -=||+
T Consensus 14 ffvsLFiFGfL---snDP~ 29 (38)
T 3arc_I 14 FFVLLFVFGFL---SGDPA 29 (38)
T ss_dssp HHHHHHHHHHH---TTGGG
T ss_pred HHHHHHHcccc---CCCCC
Confidence 45789999998 55665
No 6
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=24.52 E-value=26 Score=30.13 Aligned_cols=10 Identities=10% Similarity=0.508 Sum_probs=5.0
Q ss_pred hccCCCCCCC
Q psy16324 8 LQNSDKDEDS 17 (251)
Q Consensus 8 ~~~~~~~~~~ 17 (251)
||+.+.++++
T Consensus 151 L~EAEEEs~e 160 (208)
T 2iu1_A 151 LKEAEEESSG 160 (208)
T ss_dssp HHCSSCCCCC
T ss_pred HHcccccccc
Confidence 5565544433
No 7
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=21.64 E-value=1.1e+02 Score=21.03 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhhhhhhchhH
Q psy16324 54 GVTACLSAFAFLFLIPFIIEPAI 76 (251)
Q Consensus 54 ~~tavlSlfafLFLvPfvvdPAi 76 (251)
++.|..++.++.=.+=|.|+|+-
T Consensus 21 G~~a~~a~~~~~P~v~ffvpP~~ 43 (49)
T 1q90_R 21 GGAGLPITTLALGYGAFFVPPSS 43 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHhhheeecCCcc
Confidence 44444444444444446677764
No 8
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=15.35 E-value=57 Score=22.58 Aligned_cols=22 Identities=5% Similarity=-0.078 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh
Q psy16324 46 KFYVSLCSGVTACLSAFAFLFL 67 (251)
Q Consensus 46 ~FYttl~l~~tavlSlfafLFL 67 (251)
.-++.+.++++++++.+..+.-
T Consensus 36 ~~~t~vv~~~v~~i~~~i~lid 57 (65)
T 3bo0_B 36 AKVTALGISLLGIIGYIIHVPA 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHhhhhHHHHHHHHHHHHH
Confidence 3677888888888876665443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=14.72 E-value=1.4e+02 Score=25.03 Aligned_cols=9 Identities=22% Similarity=0.120 Sum_probs=3.5
Q ss_pred HHHhhhhhh
Q psy16324 63 AFLFLIPFI 71 (251)
Q Consensus 63 afLFLvPfv 71 (251)
++....|.+
T Consensus 270 ~~~~~~~~~ 278 (451)
T 1pw4_A 270 GILDWSPTY 278 (451)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333433
No 10
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=14.69 E-value=52 Score=22.79 Aligned_cols=10 Identities=60% Similarity=0.817 Sum_probs=0.0
Q ss_pred CCCCCccccc
Q psy16324 13 KDEDSEEDDE 22 (251)
Q Consensus 13 ~~~~~~~~~~ 22 (251)
|.|+|||||+
T Consensus 9 KGe~SdEDed 18 (47)
T 2rr3_B 9 KGDMSDEDDE 18 (47)
T ss_dssp CCCSCCCCCS
T ss_pred cccccccccc
Done!