Query psy16324
Match_columns 251
No_of_seqs 60 out of 62
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 18:28:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16324.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16324hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtf1 f.23.38.1 (F:11-45) Cy 43.3 7.9 0.00058 23.9 2.5 19 216-234 11-29 (35)
2 d2axti1 f.23.37.1 (I:1-35) Pho 37.7 14 0.001 22.7 3.0 15 58-75 15-29 (35)
3 d1ee8a3 g.39.1.8 (A:211-266) D 30.0 7.5 0.00054 25.4 0.8 11 238-248 46-56 (56)
4 d2bs2c1 f.21.2.1 (C:1-254) Fum 26.1 22 0.0016 29.1 3.4 46 39-84 206-251 (254)
5 d1q90r_ f.23.12.1 (R:) ISP sub 17.2 44 0.0032 20.8 2.6 19 53-71 15-33 (39)
6 d1cl4a_ g.40.1.1 (A:) Nucleoca 13.8 30 0.0022 20.8 1.0 9 239-247 4-12 (32)
7 d1dsva_ g.40.1.1 (A:) Nucleic 12.4 32 0.0023 20.5 0.9 9 239-247 4-12 (31)
8 d1oedb_ f.36.1.1 (B:) Acetylch 11.9 94 0.0069 23.5 3.8 10 40-49 217-226 (250)
9 d1m07a_ d.5.1.1 (A:) Amphibian 10.6 28 0.002 25.4 0.1 14 185-198 73-86 (111)
10 d1oeda_ f.36.1.1 (A:) Acetylch 9.7 1E+02 0.0075 23.2 3.3 58 2-63 160-217 (227)
No 1
>d2axtf1 f.23.38.1 (F:11-45) Cytochrome b559 subunit beta, PsbF {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=43.27 E-value=7.9 Score=23.87 Aligned_cols=19 Identities=26% Similarity=0.674 Sum_probs=15.8
Q ss_pred HHHHHhhhhHHHHHHHHHh
Q psy16324 216 YLILALVVPIVLFFGSLTI 234 (251)
Q Consensus 216 ~Li~a~~VP~vlFvvS~i~ 234 (251)
--+|++.||.|.|+-|...
T Consensus 11 lavh~l~vptvfFlGai~a 29 (35)
T d2axtf1 11 VAVHTLAVPTIFFLGAIAA 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccchhhhHhHHHH
Confidence 4589999999999987654
No 2
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=37.73 E-value=14 Score=22.72 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=11.2
Q ss_pred HHHHHHHHhhhhhhhchh
Q psy16324 58 CLSAFAFLFLIPFIIEPA 75 (251)
Q Consensus 58 vlSlfafLFLvPfvvdPA 75 (251)
..|+|+|+|| -=||+
T Consensus 15 Fv~lFiFGFL---SnDP~ 29 (35)
T d2axti1 15 FVLLFVFGFL---SGDPA 29 (35)
T ss_dssp HHHHHHHHHH---TTCTT
T ss_pred HHHHHHHhhc---cCCCC
Confidence 4689999998 55664
No 3
>d1ee8a3 g.39.1.8 (A:211-266) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
Probab=30.00 E-value=7.5 Score=25.44 Aligned_cols=11 Identities=27% Similarity=0.733 Sum_probs=9.9
Q ss_pred hccCCcCCCCC
Q psy16324 238 WYCPRKSKVQP 248 (251)
Q Consensus 238 ~~C~~~~k~~~ 248 (251)
.+||.|.|.+|
T Consensus 46 ~~Cp~CQ~~~p 56 (56)
T d1ee8a3 46 HFCPTCQGEGP 56 (56)
T ss_dssp EECTTTTTCCC
T ss_pred EECcCccCCCC
Confidence 78999999988
No 4
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=26.12 E-value=22 Score=29.06 Aligned_cols=46 Identities=24% Similarity=0.131 Sum_probs=32.0
Q ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhchhHHHHhhcCC
Q psy16324 39 QTTLQKAKFYVSLCSGVTACLSAFAFLFLIPFIIEPAIKTIMADYE 84 (251)
Q Consensus 39 ~t~~ek~~FYttl~l~~tavlSlfafLFLvPfvvdPAisti~~~f~ 84 (251)
|....+++.-.+++++++|++|+.+|+.+===--+|+...-.+|++
T Consensus 206 R~~~~~~~~~l~~~~i~lG~~sl~~fv~~G~e~~~~~~~~~~~~~~ 251 (254)
T d2bs2c1 206 RANLKKLKTLMSAFLIVLGLLTFGAYVKKGLEQTDPNIDYKYFDYK 251 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCCCTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCccccccccchh
Confidence 3444556666677778889999999888633335788877777764
No 5
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=17.25 E-value=44 Score=20.81 Aligned_cols=19 Identities=0% Similarity=-0.228 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q psy16324 53 SGVTACLSAFAFLFLIPFI 71 (251)
Q Consensus 53 l~~tavlSlfafLFLvPfv 71 (251)
|.+.|..|+-+...|+|++
T Consensus 15 Lll~G~~~~~~~g~l~py~ 33 (39)
T d1q90r_ 15 LILAGGAGLPITTLALGYG 33 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchhhhhhcccee
Confidence 3456777888888888865
No 6
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=13.84 E-value=30 Score=20.85 Aligned_cols=9 Identities=33% Similarity=0.815 Sum_probs=7.7
Q ss_pred ccCCcCCCC
Q psy16324 239 YCPRKSKVQ 247 (251)
Q Consensus 239 ~C~~~~k~~ 247 (251)
.||+|.|.+
T Consensus 4 lCPrC~kG~ 12 (32)
T d1cl4a_ 4 LCPRCKRGK 12 (32)
T ss_dssp SCSSCSSCS
T ss_pred cCccccCcc
Confidence 599999976
No 7
>d1dsva_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=12.41 E-value=32 Score=20.55 Aligned_cols=9 Identities=44% Similarity=0.715 Sum_probs=7.7
Q ss_pred ccCCcCCCC
Q psy16324 239 YCPRKSKVQ 247 (251)
Q Consensus 239 ~C~~~~k~~ 247 (251)
.||+|.|.+
T Consensus 4 lCPrC~kG~ 12 (31)
T d1dsva_ 4 LCPRCKKGY 12 (31)
T ss_dssp BCTTTCSSB
T ss_pred cCccccCcc
Confidence 599999976
No 8
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=11.87 E-value=94 Score=23.52 Aligned_cols=10 Identities=20% Similarity=0.351 Sum_probs=6.2
Q ss_pred HHHHHhhhhH
Q psy16324 40 TTLQKAKFYV 49 (251)
Q Consensus 40 t~~ek~~FYt 49 (251)
...+|+.|+.
T Consensus 217 ~VlDRlfl~l 226 (250)
T d1oedb_ 217 MVADRLFLYV 226 (250)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5566776644
No 9
>d1m07a_ d.5.1.1 (A:) Amphibian cytotoxic ribonuclease {Bullfrog (Rana catesbeiana) [TaxId: 8400]}
Probab=10.59 E-value=28 Score=25.43 Aligned_cols=14 Identities=36% Similarity=0.660 Sum_probs=11.5
Q ss_pred CCCCCcceeeeeCC
Q psy16324 185 SSPPKPFPCYYSKV 198 (251)
Q Consensus 185 ~~aga~FPCYYSr~ 198 (251)
+++|+++||.|...
T Consensus 73 lt~gs~~pC~Y~~~ 86 (111)
T d1m07a_ 73 RTSITPRPCPYSSR 86 (111)
T ss_dssp ESCCCSSSCCEEEE
T ss_pred cCCCCCCCCccccc
Confidence 45688899999887
No 10
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=9.67 E-value=1e+02 Score=23.17 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=0.0
Q ss_pred hhhhhhhccCCCCCCCcccccccCCccccccccCchhhHHHHHhhhhHHHHHHHHHHHHHHH
Q psy16324 2 EEEETKLQNSDKDEDSEEDDEEGEGEKEEKLEVEPEEQTTLQKAKFYVSLCSGVTACLSAFA 63 (251)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~p~~~t~~ek~~FYttl~l~~tavlSlfa 63 (251)
.+.....+.-..-.+.-+++++.+..++|=..+. ...+|..|+.-+.+.+.+++++|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eW~~vA----~viDRi~~~~F~l~~ii~~i~if~ 217 (227)
T d1oeda_ 160 PDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVA----MVIDHILLCVFMLICIIGTVSVFA 217 (227)
T ss_dssp ---------------------------------C----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Done!