RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16324
         (251 letters)



>d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus
           thermophilus [TaxId: 274]}
          Length = 159

 Score = 28.6 bits (63), Expect = 0.48
 Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 6/92 (6%)

Query: 79  IMADYEAEPVTCNISRHDINLGISNCNWASCREGCTAQMI-KCHQISVHYSRMFFKDYNK 137
           I   +        +S     +G  +   A+      A +    H +      +   D   
Sbjct: 67  IKRVFGDHAKRLMVSSTKSMIG--HLLGAAGAVEAIATVQALYHGVIPPTINLEDPDPEL 124

Query: 138 SHSPGPIPWDHEDIRFLINTEGCGYPPGTNCT 169
                P P + +    L N+   G   G N  
Sbjct: 125 DLDFVPEPREAKVDYALSNSFAFG---GHNAV 153


>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12
           uptake, BtuC {Escherichia coli [TaxId: 562]}
          Length = 324

 Score = 27.4 bits (60), Expect = 1.5
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 213 NLRYLILALVVPIVLFFGSLTILGYWYCP 241
           N+R+L+   V+ ++    SL     W  P
Sbjct: 12  NIRWLLCLSVLMLLALLLSLCAGEQWISP 40


>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 138

 Score = 26.0 bits (57), Expect = 2.6
 Identities = 6/47 (12%), Positives = 16/47 (34%)

Query: 1   MEEEETKLQNSDKDEDSEEDDEEGEGEKEEKLEVEPEEQTTLQKAKF 47
             E E   +  +++ +  +  +E   +K E  +   E        + 
Sbjct: 74  EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERL 120


>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
           protein 1 (GBP1), C-terminal domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 300

 Score = 25.9 bits (56), Expect = 5.2
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 1   MEEEETKLQNSDKD--EDSEEDDEEGEGEKEEKLEVEPEEQTTLQKAKF 47
           ME++E   Q   K   E  E D  +   E+E  L ++ +EQ  L K  F
Sbjct: 234 MEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGF 282


>d1egaa2 d.52.3.1 (A:183-295) GTPase Era C-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 113

 Score = 24.8 bits (54), Expect = 6.2
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 196 SKVFPTLHVVAKYNWDDNLRYL 217
           + V   L V  K  W D+ R L
Sbjct: 89  APVHLELWVKVKSGWADDERAL 110


>d1wf3a2 d.52.3.1 (A:181-298) GTPase Era C-terminal domain {Thermus
           thermophilus [TaxId: 274]}
          Length = 118

 Score = 24.8 bits (54), Expect = 6.8
 Identities = 6/22 (27%), Positives = 9/22 (40%)

Query: 196 SKVFPTLHVVAKYNWDDNLRYL 217
            KV+  L V    +W  +   L
Sbjct: 90  KKVYLDLEVKVYPDWRKDPEAL 111


>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 124

 Score = 24.7 bits (53), Expect = 7.8
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 8/65 (12%)

Query: 2  EEEETKLQNSDKDEDSEEDDEEGEGEKEEKLEVEPEEQTTLQKAKFYVSLCSGVTACLSA 61
          EE+E   +   + E  E  ++E  G   ++LE   +       A   V+ C     C   
Sbjct: 6  EEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNV-----AGDGVNRCIL---CGEQ 57

Query: 62 FAFLF 66
             L 
Sbjct: 58 LGMLG 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.433 

Gapped
Lambda     K      H
   0.267   0.0383    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 994,605
Number of extensions: 47264
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 15
Length of query: 251
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,268,006
Effective search space: 213025008
Effective search space used: 213025008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.7 bits)