Query psy16327
Match_columns 994
No_of_seqs 816 out of 3917
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 18:33:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16327.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16327hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5021 HUL4 Ubiquitin-protein 100.0 7.2E-78 1.6E-82 724.7 21.7 477 508-994 296-872 (872)
2 KOG0939|consensus 100.0 2.1E-62 4.6E-67 557.0 19.3 305 686-993 335-719 (720)
3 cd00078 HECTc HECT domain; C-t 100.0 2.1E-57 4.5E-62 516.7 24.8 272 714-992 1-352 (352)
4 KOG0941|consensus 100.0 1.7E-56 3.6E-61 518.8 21.4 272 710-994 498-850 (850)
5 KOG0942|consensus 100.0 1.9E-56 4E-61 518.6 20.8 298 687-993 603-1000(1001)
6 smart00119 HECTc Domain Homolo 100.0 1.1E-52 2.3E-57 473.2 23.3 249 736-993 4-335 (336)
7 KOG4427|consensus 100.0 7.8E-52 1.7E-56 467.3 21.0 300 686-993 672-1095(1096)
8 KOG0940|consensus 100.0 1.2E-48 2.5E-53 434.1 4.6 280 700-986 3-358 (358)
9 KOG0170|consensus 100.0 4.1E-43 8.8E-48 385.5 16.2 267 712-993 224-620 (621)
10 PF00632 HECT: HECT-domain (ub 100.0 2.4E-39 5.3E-44 364.4 15.6 222 764-993 1-316 (317)
11 KOG0943|consensus 99.9 1.4E-23 2.9E-28 244.5 18.5 185 800-993 2741-3014(3015)
12 COG5021 HUL4 Ubiquitin-protein 99.9 5E-24 1.1E-28 258.8 4.5 126 2-144 673-804 (872)
13 KOG0942|consensus 99.8 1.8E-22 3.9E-27 236.4 2.4 137 1-160 805-957 (1001)
14 KOG0939|consensus 99.8 7.6E-22 1.6E-26 226.5 3.3 117 5-138 524-642 (720)
15 KOG0941|consensus 99.8 1.3E-21 2.8E-26 229.0 3.7 175 2-207 658-833 (850)
16 smart00119 HECTc Domain Homolo 99.8 3.6E-21 7.8E-26 217.5 2.3 114 7-137 147-263 (336)
17 KOG4427|consensus 99.8 8.2E-21 1.8E-25 216.8 3.9 121 1-138 875-1000(1096)
18 cd00078 HECTc HECT domain; C-t 99.8 3.2E-20 6.8E-25 211.9 5.5 113 8-137 166-281 (352)
19 KOG0170|consensus 99.7 7.8E-18 1.7E-22 186.9 4.7 122 13-151 431-562 (621)
20 PF00632 HECT: HECT-domain (ub 99.7 6.2E-18 1.3E-22 190.7 3.0 118 10-144 128-252 (317)
21 KOG1030|consensus 99.6 3.9E-16 8.5E-21 153.6 8.9 75 146-221 22-98 (168)
22 cd04021 C2_E3_ubiquitin_ligase 99.6 3E-15 6.5E-20 145.5 11.7 103 147-249 19-124 (125)
23 cd08401 C2A_RasA2_RasA3 C2 dom 99.6 1.4E-14 3E-19 140.0 11.6 99 148-249 20-119 (121)
24 cd04042 C2A_MCTP_PRT C2 domain 99.6 1.7E-14 3.6E-19 139.4 11.6 100 147-251 18-119 (121)
25 cd04016 C2_Tollip C2 domain pr 99.6 1.5E-14 3.1E-19 139.4 10.9 100 147-251 19-121 (121)
26 cd08682 C2_Rab11-FIP_classI C2 99.6 2.1E-14 4.7E-19 139.7 11.3 101 147-249 17-125 (126)
27 cd08382 C2_Smurf-like C2 domai 99.5 9.4E-14 2E-18 134.6 11.8 101 145-249 16-122 (123)
28 cd08691 C2_NEDL1-like C2 domai 99.5 7.8E-14 1.7E-18 137.3 11.0 105 145-249 16-136 (137)
29 cd08375 C2_Intersectin C2 doma 99.5 9.8E-14 2.1E-18 136.8 10.9 100 147-250 33-134 (136)
30 cd08678 C2_C21orf25-like C2 do 99.5 1.5E-13 3.2E-18 133.8 11.8 103 147-252 15-120 (126)
31 cd04054 C2A_Rasal1_RasA4 C2 do 99.5 1.3E-13 2.9E-18 133.2 11.1 102 147-250 18-120 (121)
32 KOG3209|consensus 99.5 9.3E-14 2E-18 159.2 11.3 171 370-630 129-302 (984)
33 cd04022 C2A_MCTP_PRT_plant C2 99.5 1E-13 2.3E-18 135.0 10.0 101 147-250 18-124 (127)
34 cd04024 C2A_Synaptotagmin-like 99.5 1.6E-13 3.4E-18 133.6 11.0 103 147-250 21-127 (128)
35 cd08378 C2B_MCTP_PRT_plant C2 99.5 1.7E-13 3.8E-18 132.4 10.4 98 149-249 16-117 (121)
36 cd08379 C2D_MCTP_PRT_plant C2 99.5 2E-13 4.2E-18 132.4 10.5 95 147-247 21-125 (126)
37 cd08690 C2_Freud-1 C2 domain f 99.5 1.6E-13 3.5E-18 137.2 10.1 97 149-250 24-135 (155)
38 cd08373 C2A_Ferlin C2 domain f 99.5 3.5E-13 7.6E-18 131.3 11.4 101 147-253 12-117 (127)
39 cd04052 C2B_Tricalbin-like C2 99.5 3E-13 6.4E-18 128.7 10.4 97 147-251 10-108 (111)
40 KOG1891|consensus 99.5 6.5E-14 1.4E-18 140.9 6.0 70 368-437 88-160 (271)
41 cd08395 C2C_Munc13 C2 domain t 99.4 2.4E-13 5.3E-18 130.6 9.5 84 148-236 18-112 (120)
42 cd04014 C2_PKC_epsilon C2 doma 99.4 5.4E-13 1.2E-17 130.9 10.8 96 148-251 33-128 (132)
43 cd08376 C2B_MCTP_PRT C2 domain 99.4 6.6E-13 1.4E-17 127.1 11.1 94 147-250 18-113 (116)
44 cd04036 C2_cPLA2 C2 domain pre 99.4 7.3E-13 1.6E-17 127.5 11.3 95 147-250 18-116 (119)
45 cd04033 C2_NEDD4_NEDD4L C2 dom 99.4 7.6E-13 1.6E-17 129.9 11.3 104 147-250 18-131 (133)
46 cd08400 C2_Ras_p21A1 C2 domain 99.4 6.3E-13 1.4E-17 129.4 10.6 99 149-251 21-122 (126)
47 cd04011 C2B_Ferlin C2 domain s 99.4 5.9E-13 1.3E-17 126.6 9.2 84 148-232 19-108 (111)
48 cd04051 C2_SRC2_like C2 domain 99.4 7.5E-13 1.6E-17 128.5 10.1 101 147-247 18-125 (125)
49 cd04019 C2C_MCTP_PRT_plant C2 99.4 7.9E-13 1.7E-17 132.5 10.3 103 147-252 18-132 (150)
50 cd08681 C2_fungal_Inn1p-like C 99.4 6.2E-13 1.3E-17 127.7 9.2 97 146-250 18-117 (118)
51 cd04039 C2_PSD C2 domain prese 99.4 5.3E-13 1.1E-17 126.3 8.5 73 148-221 24-99 (108)
52 cd04038 C2_ArfGAP C2 domain pr 99.4 3.8E-13 8.2E-18 133.8 7.7 74 148-222 20-94 (145)
53 cd08677 C2A_Synaptotagmin-13 C 99.4 2.6E-13 5.7E-18 129.0 6.2 70 148-217 30-106 (118)
54 cd08377 C2C_MCTP_PRT C2 domain 99.4 1.4E-12 3E-17 125.4 10.5 97 147-249 19-116 (119)
55 cd04046 C2_Calpain C2 domain p 99.4 1.9E-12 4.2E-17 126.0 10.6 99 146-251 20-121 (126)
56 cd04041 C2A_fungal C2 domain f 99.4 1.3E-12 2.9E-17 124.2 9.1 73 148-220 21-100 (111)
57 cd04040 C2D_Tricalbin-like C2 99.4 3E-12 6.5E-17 122.3 11.5 96 147-247 17-114 (115)
58 cd04044 C2A_Tricalbin-like C2 99.4 2E-12 4.3E-17 125.1 10.4 99 148-251 22-122 (124)
59 cd04010 C2B_RasA3 C2 domain se 99.4 1.4E-12 3.1E-17 130.0 9.6 87 148-236 17-124 (148)
60 cd04025 C2B_RasA1_RasA4 C2 dom 99.4 1.7E-12 3.8E-17 125.7 9.8 99 147-249 18-122 (123)
61 KOG3209|consensus 99.4 1.1E-12 2.3E-17 150.7 9.3 164 508-678 130-304 (984)
62 cd08688 C2_KIAA0528-like C2 do 99.4 1.8E-12 3.9E-17 123.1 8.9 84 147-231 18-106 (110)
63 cd04018 C2C_Ferlin C2 domain t 99.4 2.7E-12 5.9E-17 128.4 10.4 73 148-221 33-108 (151)
64 cd08381 C2B_PI3K_class_II C2 d 99.4 1.6E-12 3.4E-17 125.9 8.2 72 148-219 31-111 (122)
65 cd04027 C2B_Munc13 C2 domain s 99.3 4.6E-12 1E-16 123.5 11.0 97 147-249 19-127 (127)
66 cd08391 C2A_C2C_Synaptotagmin_ 99.3 4E-12 8.6E-17 122.4 10.0 92 148-249 26-119 (121)
67 cd04015 C2_plant_PLD C2 domain 99.3 5.9E-12 1.3E-16 127.4 11.5 99 146-250 54-156 (158)
68 cd04028 C2B_RIM1alpha C2 domai 99.3 5.3E-12 1.1E-16 125.4 10.7 71 147-217 48-124 (146)
69 cd04017 C2D_Ferlin C2 domain f 99.3 5.4E-12 1.2E-16 124.4 10.5 101 147-251 19-131 (135)
70 cd04048 C2A_Copine C2 domain f 99.3 4.6E-12 1E-16 122.2 9.7 75 147-221 18-104 (120)
71 cd04043 C2_Munc13_fungal C2 do 99.3 6.4E-12 1.4E-16 122.1 10.8 98 147-251 19-120 (126)
72 KOG0940|consensus 99.3 1E-12 2.2E-17 147.3 5.2 116 4-137 172-289 (358)
73 cd04050 C2B_Synaptotagmin-like 99.3 5.7E-12 1.2E-16 118.6 9.4 80 147-231 18-99 (105)
74 cd04032 C2_Perforin C2 domain 99.3 3.7E-12 8.1E-17 123.7 7.7 71 147-218 45-118 (127)
75 cd08388 C2A_Synaptotagmin-4-11 99.3 6.8E-12 1.5E-16 122.5 9.6 85 148-235 36-127 (128)
76 cd08392 C2A_SLP-3 C2 domain fi 99.3 4.5E-12 9.7E-17 123.7 8.2 85 148-232 35-127 (128)
77 cd08394 C2A_Munc13 C2 domain f 99.3 5.8E-12 1.2E-16 121.0 8.5 81 151-235 21-102 (127)
78 cd08686 C2_ABR C2 domain in th 99.3 7.1E-12 1.5E-16 118.9 8.4 70 148-217 13-93 (118)
79 cd04029 C2A_SLP-4_5 C2 domain 99.3 6.9E-12 1.5E-16 121.9 8.5 74 147-220 34-115 (125)
80 cd04009 C2B_Munc13-like C2 dom 99.3 7.7E-12 1.7E-16 123.0 8.4 74 147-220 34-119 (133)
81 cd08387 C2A_Synaptotagmin-8 C2 99.3 8.1E-12 1.8E-16 121.2 8.0 74 147-220 34-113 (124)
82 cd08393 C2A_SLP-1_2 C2 domain 99.3 1.2E-11 2.6E-16 120.3 8.4 71 148-218 35-113 (125)
83 cd08385 C2A_Synaptotagmin-1-5- 99.2 1.6E-11 3.5E-16 119.0 8.5 73 147-219 34-112 (124)
84 PLN03008 Phospholipase D delta 99.2 3.1E-11 6.6E-16 145.3 11.8 100 147-252 74-177 (868)
85 cd08386 C2A_Synaptotagmin-7 C2 99.2 3.1E-11 6.7E-16 117.2 9.4 73 147-219 34-113 (125)
86 cd04031 C2A_RIM1alpha C2 domai 99.2 2.4E-11 5.3E-16 117.8 8.5 71 147-217 34-113 (125)
87 KOG0696|consensus 99.2 7.2E-12 1.6E-16 137.4 5.2 75 148-222 199-280 (683)
88 cd04045 C2C_Tricalbin-like C2 99.2 2.3E-11 5.1E-16 117.3 8.2 74 147-220 19-93 (120)
89 cd04047 C2B_Copine C2 domain s 99.2 2.6E-11 5.6E-16 115.0 7.2 73 147-220 18-101 (110)
90 cd04037 C2E_Ferlin C2 domain f 99.2 4.2E-11 9E-16 116.3 8.3 73 147-219 18-93 (124)
91 cd08383 C2A_RasGAP C2 domain ( 99.2 5.5E-11 1.2E-15 113.8 9.1 97 148-250 16-116 (117)
92 cd08390 C2A_Synaptotagmin-15-1 99.2 5.5E-11 1.2E-15 115.0 8.9 74 147-220 33-112 (123)
93 KOG1891|consensus 99.2 3.7E-11 8.1E-16 121.3 7.8 74 506-630 89-162 (271)
94 cd08680 C2_Kibra C2 domain fou 99.2 3.2E-11 6.9E-16 116.9 6.8 70 148-217 33-111 (124)
95 cd04030 C2C_KIAA1228 C2 domain 99.2 3.9E-11 8.5E-16 116.7 7.5 73 147-219 34-116 (127)
96 cd08521 C2A_SLP C2 domain firs 99.2 6.6E-11 1.4E-15 114.4 8.0 71 148-218 34-112 (123)
97 cd08685 C2_RGS-like C2 domain 99.2 6.6E-11 1.4E-15 114.0 7.9 71 148-218 30-108 (119)
98 cd08407 C2B_Synaptotagmin-13 C 99.2 5.7E-11 1.2E-15 117.1 7.4 69 148-216 36-112 (138)
99 cd04049 C2_putative_Elicitor-r 99.2 9.4E-11 2E-15 113.7 8.8 73 147-220 19-97 (124)
100 cd08675 C2B_RasGAP C2 domain s 99.1 1.7E-10 3.6E-15 114.0 9.7 86 147-235 16-121 (137)
101 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.1 1E-10 2.2E-15 118.8 8.0 74 147-220 45-127 (162)
102 cd08389 C2A_Synaptotagmin-14_1 99.1 1.5E-10 3.2E-15 112.4 8.4 81 148-232 35-122 (124)
103 cd08404 C2B_Synaptotagmin-4 C2 99.1 1.3E-10 2.9E-15 114.6 7.5 70 147-216 33-110 (136)
104 cd08406 C2B_Synaptotagmin-12 C 99.1 1.3E-10 2.8E-15 114.6 7.2 69 147-215 33-109 (136)
105 PLN03200 cellulose synthase-in 99.1 2.5E-10 5.5E-15 149.3 10.7 98 145-249 1994-2097(2102)
106 cd08384 C2B_Rabphilin_Doc2 C2 99.1 2E-10 4.4E-15 112.8 7.2 70 147-216 31-108 (133)
107 cd04035 C2A_Rabphilin_Doc2 C2 99.1 4.1E-10 8.8E-15 109.1 8.8 73 147-220 33-114 (123)
108 cd08405 C2B_Synaptotagmin-7 C2 99.1 2.7E-10 5.8E-15 112.4 7.4 71 147-217 33-111 (136)
109 cd08676 C2A_Munc13-like C2 dom 99.1 4.7E-10 1E-14 112.5 8.8 68 147-218 46-143 (153)
110 cd08402 C2B_Synaptotagmin-1 C2 99.0 2.2E-10 4.7E-15 113.1 6.2 70 147-216 33-110 (136)
111 cd04013 C2_SynGAP_like C2 doma 99.0 1.4E-09 3.1E-14 107.9 11.3 101 148-251 25-138 (146)
112 cd08410 C2B_Synaptotagmin-17 C 99.0 2.9E-10 6.3E-15 112.1 5.7 68 147-214 32-107 (135)
113 cd08403 C2B_Synaptotagmin-3-5- 99.0 4.3E-10 9.4E-15 110.6 5.9 69 147-215 32-108 (134)
114 cd04026 C2_PKC_alpha_gamma C2 99.0 1.2E-09 2.6E-14 107.0 8.9 74 147-220 31-111 (131)
115 cd08409 C2B_Synaptotagmin-15 C 99.0 8.5E-10 1.8E-14 109.1 6.5 69 147-215 32-108 (137)
116 cd08692 C2B_Tac2-N C2 domain s 99.0 9.9E-10 2.1E-14 107.2 6.5 70 148-217 33-110 (135)
117 KOG1028|consensus 98.9 2.4E-09 5.3E-14 124.4 10.0 101 149-254 187-296 (421)
118 cd08408 C2B_Synaptotagmin-14_1 98.9 1.7E-09 3.7E-14 107.0 7.1 69 148-216 34-111 (138)
119 cd00275 C2_PLC_like C2 domain 98.9 7.4E-09 1.6E-13 100.7 11.1 95 147-250 22-126 (128)
120 KOG0943|consensus 98.9 1.2E-10 2.6E-15 138.2 -2.5 88 10-114 2827-2914(3015)
121 COG5104 PRP40 Splicing factor 98.9 3.3E-10 7.1E-15 124.3 0.5 66 375-440 14-88 (590)
122 cd00276 C2B_Synaptotagmin C2 d 98.9 3.8E-09 8.2E-14 103.6 6.8 70 147-216 32-109 (134)
123 smart00239 C2 Protein kinase C 98.7 3.3E-08 7.2E-13 90.3 8.3 73 148-220 19-95 (101)
124 cd08374 C2F_Ferlin C2 domain s 98.7 2.6E-08 5.7E-13 97.2 7.3 72 149-220 24-124 (133)
125 KOG1011|consensus 98.7 1.2E-08 2.7E-13 116.2 5.0 102 147-254 313-426 (1283)
126 PF00168 C2: C2 domain; Inter 98.7 1.9E-08 4.1E-13 89.6 5.0 65 147-211 17-85 (85)
127 cd00030 C2 C2 domain. The C2 d 98.7 8.9E-08 1.9E-12 86.9 9.2 72 147-218 17-90 (102)
128 COG5038 Ca2+-dependent lipid-b 98.7 3.1E-08 6.7E-13 121.4 7.6 72 148-219 1059-1132(1227)
129 PF00397 WW: WW domain; Inter 98.6 2.1E-08 4.5E-13 72.5 2.9 30 374-403 1-31 (31)
130 PLN02223 phosphoinositide phos 98.6 7.3E-08 1.6E-12 112.5 7.6 75 146-220 431-511 (537)
131 PF00397 WW: WW domain; Inter 98.6 4.7E-08 1E-12 70.6 3.3 30 511-540 1-31 (31)
132 PLN02952 phosphoinositide phos 98.5 4.2E-07 9E-12 108.4 10.6 89 147-243 494-588 (599)
133 smart00456 WW Domain with 2 co 98.4 2.8E-07 6E-12 67.2 4.3 31 511-541 1-31 (32)
134 COG5104 PRP40 Splicing factor 98.4 1.2E-07 2.6E-12 104.6 1.9 72 408-543 15-86 (590)
135 smart00456 WW Domain with 2 co 98.4 3.6E-07 7.8E-12 66.6 3.6 30 374-403 1-30 (32)
136 COG5038 Ca2+-dependent lipid-b 98.3 1.1E-06 2.4E-11 108.2 9.5 99 148-251 457-556 (1227)
137 PLN02230 phosphoinositide phos 98.3 8.3E-07 1.8E-11 105.8 7.4 74 147-220 493-572 (598)
138 PLN02222 phosphoinositide phos 98.3 9.1E-07 2E-11 105.3 7.7 74 147-220 476-555 (581)
139 cd08689 C2_fungal_Pkc1p C2 dom 98.3 1.3E-06 2.8E-11 80.6 5.9 70 147-220 20-89 (109)
140 cd00201 WW Two conserved trypt 98.2 1.2E-06 2.6E-11 63.3 4.2 30 512-541 1-30 (31)
141 KOG2059|consensus 98.2 1.9E-06 4.2E-11 100.8 7.4 101 147-251 23-124 (800)
142 cd00201 WW Two conserved trypt 98.2 1.4E-06 3.1E-11 62.9 3.6 29 375-403 1-29 (31)
143 KOG0155|consensus 98.2 1.8E-06 3.8E-11 97.6 5.9 31 376-406 12-42 (617)
144 KOG1031|consensus 98.1 5.8E-06 1.3E-10 93.9 7.7 99 149-248 24-132 (1169)
145 KOG1028|consensus 98.1 3.3E-06 7.2E-11 98.5 5.6 68 148-215 317-392 (421)
146 PLN02228 Phosphoinositide phos 98.1 1.3E-05 2.8E-10 95.3 10.1 96 147-250 455-559 (567)
147 PLN02270 phospholipase D alpha 98.1 1.2E-05 2.5E-10 98.0 9.6 98 148-251 45-147 (808)
148 KOG1328|consensus 98.0 2.2E-06 4.7E-11 99.9 2.8 72 148-219 966-1049(1103)
149 KOG0169|consensus 98.0 9.7E-06 2.1E-10 96.7 6.2 73 148-220 639-718 (746)
150 KOG1328|consensus 97.9 6.4E-06 1.4E-10 96.2 2.3 83 163-249 178-298 (1103)
151 KOG2059|consensus 97.8 4.4E-05 9.4E-10 89.8 7.4 160 85-251 72-275 (800)
152 PLN02964 phosphatidylserine de 97.5 9.2E-05 2E-09 89.6 4.7 71 150-220 68-140 (644)
153 KOG1264|consensus 97.5 0.00025 5.5E-09 84.1 7.9 70 150-219 1085-1162(1267)
154 KOG3259|consensus 97.5 5.9E-05 1.3E-09 72.4 2.3 33 405-437 6-39 (163)
155 KOG3259|consensus 97.4 7.7E-05 1.7E-09 71.6 2.3 37 509-545 5-42 (163)
156 KOG0155|consensus 97.0 0.00081 1.8E-08 76.7 5.1 32 406-437 10-41 (617)
157 PLN02352 phospholipase D epsil 96.9 0.0022 4.7E-08 78.6 8.7 89 151-251 37-129 (758)
158 KOG0905|consensus 96.9 0.00056 1.2E-08 84.3 3.0 70 149-218 1544-1622(1639)
159 KOG1013|consensus 96.8 0.00088 1.9E-08 73.1 3.8 67 148-214 252-326 (362)
160 KOG3837|consensus 96.0 0.013 2.8E-07 65.7 6.5 88 159-251 401-502 (523)
161 KOG1326|consensus 95.5 0.0051 1.1E-07 75.5 1.2 70 147-216 631-703 (1105)
162 KOG1011|consensus 94.9 0.053 1.1E-06 63.5 6.8 69 152-220 1147-1226(1283)
163 cd08683 C2_C2cd3 C2 domain fou 94.8 0.074 1.6E-06 51.2 6.3 75 149-223 32-136 (143)
164 KOG1326|consensus 94.4 0.028 6.2E-07 69.3 3.4 67 148-215 225-302 (1105)
165 KOG1327|consensus 92.9 0.24 5.2E-06 58.5 7.5 74 145-219 152-236 (529)
166 KOG2060|consensus 92.9 0.053 1.1E-06 60.6 1.9 78 138-217 281-364 (405)
167 KOG1013|consensus 92.6 0.036 7.9E-07 60.9 0.2 103 148-251 112-228 (362)
168 cd08684 C2A_Tac2-N C2 domain f 91.0 0.1 2.2E-06 46.8 1.2 65 151-217 22-92 (103)
169 cd08397 C2_PI3K_class_III C2 d 88.8 1 2.2E-05 45.8 6.5 69 149-217 29-107 (159)
170 KOG1327|consensus 84.9 2 4.4E-05 51.0 7.0 84 163-251 42-131 (529)
171 KOG1924|consensus 83.4 3.8 8.2E-05 50.1 8.3 12 68-79 331-342 (1102)
172 PF15627 CEP76-C2: CEP76 C2 do 83.1 7 0.00015 39.5 9.0 94 154-251 38-149 (156)
173 cd08687 C2_PKN-like C2 domain 81.1 3.9 8.5E-05 37.3 5.6 64 150-217 9-72 (98)
174 PF00792 PI3K_C2: Phosphoinosi 79.8 2.4 5.1E-05 42.1 4.4 53 165-217 23-85 (142)
175 KOG1924|consensus 77.9 11 0.00024 46.2 9.8 12 802-813 943-954 (1102)
176 cd08380 C2_PI3K_like C2 domain 77.9 4.1 8.8E-05 41.1 5.5 53 165-217 48-107 (156)
177 cd08693 C2_PI3K_class_I_beta_d 75.6 6 0.00013 40.8 6.1 37 164-200 46-87 (173)
178 PF10358 NT-C2: N-terminal C2 73.0 22 0.00048 34.9 9.2 75 173-251 50-134 (143)
179 cd08398 C2_PI3K_class_I_alpha 72.8 7 0.00015 39.7 5.6 67 150-217 26-106 (158)
180 cd08399 C2_PI3K_class_I_gamma 71.4 13 0.00027 38.6 7.2 35 165-199 49-88 (178)
181 KOG3552|consensus 68.6 1.6 3.4E-05 54.1 -0.1 33 404-436 18-50 (1298)
182 KOG3552|consensus 68.1 2.2 4.7E-05 53.0 0.9 49 619-674 3-51 (1298)
183 KOG0162|consensus 67.4 1.1E+02 0.0024 37.9 14.5 28 64-92 626-653 (1106)
184 KOG4334|consensus 66.8 5.2 0.00011 46.4 3.5 34 508-541 152-185 (650)
185 KOG0694|consensus 66.4 2.6 5.7E-05 51.2 1.1 70 149-218 27-96 (694)
186 KOG4334|consensus 64.0 5.6 0.00012 46.2 3.1 36 368-403 149-184 (650)
187 KOG1452|consensus 63.6 12 0.00027 41.2 5.4 69 150-220 74-144 (442)
188 TIGR03300 assembly_YfgL outer 62.1 1.4E+02 0.003 34.4 14.4 60 377-436 106-173 (377)
189 KOG4286|consensus 62.0 2.5 5.4E-05 51.4 -0.1 29 515-543 354-382 (966)
190 KOG4286|consensus 61.0 3.2 6.9E-05 50.5 0.5 31 409-439 353-383 (966)
191 PRK11138 outer membrane biogen 60.6 1.8E+02 0.0038 33.8 15.0 59 378-436 122-188 (394)
192 cd04012 C2A_PI3K_class_II C2 d 58.4 30 0.00066 35.5 7.1 44 174-217 62-119 (171)
193 PF11618 DUF3250: Protein of u 55.3 41 0.0009 31.8 6.8 88 155-248 4-101 (107)
194 PF14429 DOCK-C2: C2 domain in 53.3 16 0.00034 38.0 4.1 54 163-216 60-120 (184)
195 PF15625 CC2D2AN-C2: CC2D2A N- 50.2 33 0.00072 35.1 5.8 70 147-217 34-106 (168)
196 cd08679 C2_DOCK180_related C2 45.2 38 0.00083 34.9 5.4 51 166-216 56-115 (178)
197 smart00142 PI3K_C2 Phosphoinos 40.5 43 0.00093 31.1 4.5 50 150-199 32-91 (100)
198 KOG1265|consensus 38.9 26 0.00056 44.0 3.3 66 149-218 719-795 (1189)
199 PRK11138 outer membrane biogen 37.3 3.8E+02 0.0081 31.1 12.8 55 382-436 166-233 (394)
200 KOG2419|consensus 36.1 11 0.00024 45.3 -0.3 57 147-205 302-361 (975)
201 TIGR03300 assembly_YfgL outer 33.5 6.2E+02 0.013 28.9 13.7 56 381-436 70-133 (377)
202 COG4257 Vgb Streptogramin lyas 33.1 7.4E+02 0.016 27.7 17.5 21 644-664 276-296 (353)
203 cd08695 C2_Dock-B C2 domains f 32.9 93 0.002 32.6 5.9 53 163-215 54-112 (189)
204 cd08694 C2_Dock-A C2 domains f 28.8 1.3E+02 0.0027 31.8 6.0 53 163-215 54-114 (196)
205 KOG0150|consensus 27.3 34 0.00073 37.9 1.6 28 377-404 152-179 (336)
206 smart00391 MBD Methyl-CpG bind 26.6 63 0.0014 28.7 2.9 24 510-533 7-38 (77)
207 PF07462 MSP1_C: Merozoite sur 26.4 1.4E+02 0.0031 35.8 6.5 16 771-786 421-436 (574)
208 cd01396 MeCP2_MBD MeCP2, MBD1, 26.3 82 0.0018 28.0 3.6 24 510-533 6-36 (77)
209 KOG1923|consensus 26.1 1.9E+02 0.0041 36.3 7.6 14 374-387 336-349 (830)
210 cd08696 C2_Dock-C C2 domains f 25.5 1.2E+02 0.0026 31.6 5.1 53 163-215 55-117 (179)
211 KOG0150|consensus 22.5 62 0.0013 35.9 2.5 30 408-437 151-180 (336)
212 KOG1329|consensus 21.5 56 0.0012 41.4 2.2 71 150-220 138-210 (887)
213 cd00122 MBD MeCP2, MBD1, MBD2, 21.4 86 0.0019 26.4 2.7 25 509-533 4-35 (62)
214 PF07462 MSP1_C: Merozoite sur 20.6 2E+02 0.0044 34.6 6.2 11 84-94 49-59 (574)
215 smart00391 MBD Methyl-CpG bind 20.2 94 0.002 27.6 2.8 12 372-383 6-17 (77)
No 1
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-78 Score=724.74 Aligned_cols=477 Identities=35% Similarity=0.556 Sum_probs=391.3
Q ss_pred CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChhhhhccccccccccccccc--CCccc-cCCCCCCCcCCCCccc-c
Q psy16327 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQ--GSQRF-LYPQHGVGVSSSSAVS-F 583 (994)
Q Consensus 508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~~~~~~~~~~~~r~~~~~q--~~~r~-~~~~~~~~~~~~~~~~-~ 583 (994)
-..++++|+.+.+.-|++||++|.+..++|..|.....-.. +. .....+ ..... ..+.+.....-..+.. +
T Consensus 296 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~ 370 (872)
T COG5021 296 LLRLNSLFSTRADSFGRTYYLDHDRILTQYSRPLLEETLGE----ST-SFLVVNNDDSSSIKDLPHQVGSNPFLEAHPEF 370 (872)
T ss_pred cccccccccchhhhcchhhhhhhhhhhhhhhhccchhhhhh----hh-hhccccccchhhhhhcccccCCcccccccHHH
Confidence 34689999999999999999999999999999965422110 00 000000 00000 0000000000000000 0
Q ss_pred CCC---cc-cccccCCCCCCCceEEEcCCCceEEEecCCcccccCCCCcccccc-------------cccCCCCCCCCCC
Q psy16327 584 STG---VT-EEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEI-------------GQIGADEPPLPPG 646 (994)
Q Consensus 584 ~~~---~~-~~~~~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~~~~-------------~~~~~~~~~LP~g 646 (994)
+.. +. ...-.....|.+|+..+...++.+++++.+..+.|++|+.+.... .+....+++|+.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 450 (872)
T COG5021 371 SELLKNQSRGTTRDFRNKPTGWSSSIEDLGQFLFSDFLTSSSTYEDLRREQLGRESDESFYVASNVQQQRASREGPLLSG 450 (872)
T ss_pred HHHHhhhcccccchhhcCCccchhhhhhhHHHHHhhhhcchhhhhchhhhhhhhhhccchhhhcccccccccccccccch
Confidence 000 00 001112467999999999999999999999999999998743100 0111367899999
Q ss_pred cceeeccCcceeeeccCCCccccCCCCCCCCCCCCCccCCccccchhhhhhhhhhhhhhccCCCCCceEEEecCCccchH
Q psy16327 647 WEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFED 726 (994)
Q Consensus 647 We~~~~~~g~~yfv~hn~r~tt~~dPr~~~~~~~~~~~~~~~~~~~~f~~k~~~fr~~~~~~~~~~~~~i~V~R~~i~ed 726 (994)
|++|+....+.|++.|.+..++|.+++.+.....+.. ...++.+.++.|+.+++.. ......+.++|.|||++||+|
T Consensus 451 ~~~r~~~~~~~~~~~h~k~~~~~~~~~~g~~~~~~~~--~~~r~~~~~r~~l~~~~~~-~~~~~~~~l~I~VrRd~vf~D 527 (872)
T COG5021 451 WKTRLNNLYRFYFVEHRKKTLTKNDSRLGSFISLNKL--DIRRIKEDKRRKLFYSLKQ-KAKIFDPYLHIKVRRDRVFED 527 (872)
T ss_pred HHHHhhhhheeeehhcccceeeecCCCCchhhhhchh--HHHHHHHHHHHHHHHHHhh-hccccCcceEEEEecccchHH
Confidence 9999999999999999999999999996554433310 1234555666666666554 334567899999999999999
Q ss_pred hHHHhhcCCccccCceeEEEEeCcccccCCchHHHHHHHHHHHHhCCCCCCccccCCCCceeeeCCCCCCCchhhHHHHH
Q psy16327 727 SYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKF 806 (994)
Q Consensus 727 s~~~l~~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~~el~~p~~~lF~~~~~~~~~~~~np~s~~~~~~l~~f~f 806 (994)
+|++|+...+.++|++|+|+|.||+|+|+||++||||++|+++||+|+||||+++..+.|++++||.+.+||+||+||+|
T Consensus 528 sy~~i~~~~~~~~k~~L~i~F~~EeGiD~GGltrE~~~lLs~~~Fnp~y~LF~y~t~d~~~~~~n~~s~~npe~L~yf~f 607 (872)
T COG5021 528 SYREIMDESGDDLKKTLEIEFVGEEGIDAGGLTREWLFLLSKEMFNPDYGLFEYITEDLYTLPINPLSSINPEHLSYFKF 607 (872)
T ss_pred HHHHHHHhchhhhcceEEEEecCcccccCCccchHHHHHHhHHhcCCcccceeeecccccccCcCccccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChHhHhhHHHHHhcCCCccceeeEEEEEEEecceeEeeee
Q psy16327 807 IGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHEL 886 (994)
Q Consensus 807 iGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l~~sL~~l~~~~~~~~~l~l~F~~~~~~~g~~~~~eL 886 (994)
|||+||+||||++.||++|+.+|||+||+++++++||+++||++|++|+||+++++++..++++|+++.+.+|..++|||
T Consensus 608 iGrvIGkaIyd~~~LD~~F~~~fyKklL~~~~sl~Dl~s~Dpe~y~sLv~ll~~~~d~~~l~l~Fsve~~~fg~~~tVeL 687 (872)
T COG5021 608 LGRVIGKAIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLNNDIDETILDLTFTVEDDSFGESRTVEL 687 (872)
T ss_pred HHHHHHHHHHhcceeeecchHHHHHHHhCCCCchhhhhhcCHHHHHHHHHHHcCCCCcceeeeeEEEeecccCceeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999986799999999999999999999
Q ss_pred ccCCceeeeccchHHHHHHHHH----------------hcc--------------------ccc------------eeee
Q psy16327 887 KENGDKIRVCEENKEEYMRWYG----------------SGS--------------------SCE------------RAIV 918 (994)
Q Consensus 887 ~~~G~~i~VT~~Nk~eYv~l~~----------------~G~--------------------lcG------------~t~y 918 (994)
||||++|.||++||+|||.+|+ .|| ||| +|.|
T Consensus 688 ipnG~ni~VT~~Nk~eYV~~vvdy~L~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ELe~LI~G~~e~iDidd~K~~T~Y 767 (872)
T COG5021 688 IPNGRNISVTNENKKEYVKKVVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQIFDESELELLIGGIPEDIDIDDWKSNTAY 767 (872)
T ss_pred ccCCccccccchHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHhcCHHHHhhcCHHHHHHHHCCCCccccHHHHhhcccc
Confidence 9999999999999999999998 366 677 7888
Q ss_pred cC---------------------------ee---eeccCCCCCCCCCCCCCCCCcceeeeecCCC-CCCcEEeccccccc
Q psy16327 919 RR---------------------------EP---VCFSSLPGHAVFPWEDLPNSWRFCIEKVGKD-TWLPRSHTCFNRLD 967 (994)
Q Consensus 919 ~~---------------------------qi---s~r~P~~Gf~~l~~~~~~~~~~f~i~~~~~~-~~LP~A~TCfn~L~ 967 (994)
++ || ++|+|++||+.|++++ |+++|+|++.+.+ ++||+||||||+|+
T Consensus 768 ~GY~~~s~~I~wFWeii~~f~~eer~klLQFvTGtsriPi~GFk~L~~~~--~~~kf~I~~~g~~~~rLP~ahTCFN~L~ 845 (872)
T COG5021 768 HGYTEDSPIIVWFWEIISEFDFEERAKLLQFVTGTSRIPINGFKDLQGSD--GVRKFTIEKGGTDDDRLPSAHTCFNRLK 845 (872)
T ss_pred cccccCCcHHHHHHHHHHHhCHHHHhhhheeccCCCCCCCCChhhcCCCc--ccceeeeecCCCccccCCchhhhhhhcc
Confidence 86 22 8999999999999999 9999999999876 56999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCCC
Q psy16327 968 LPPYKSYDQMVEKLNYAIEETEGFGQE 994 (994)
Q Consensus 968 LP~Y~s~e~L~eKL~~AI~~~~GFg~~ 994 (994)
||+|+|||+|++||++||+||.|||++
T Consensus 846 LP~YsSke~Lr~kL~~AI~Eg~GFg~~ 872 (872)
T COG5021 846 LPEYSSKEKLRSKLLTAINEGAGFGLL 872 (872)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCcCcC
Confidence 999999999999999999999999985
No 2
>KOG0939|consensus
Probab=100.00 E-value=2.1e-62 Score=557.00 Aligned_cols=305 Identities=39% Similarity=0.624 Sum_probs=285.1
Q ss_pred Cccccchhhhhhhhhhhhhhcc-CCCCCceEEEecCCccchHhHHHhhcCCccccCceeEEEEeCcccccCCchHHHHHH
Q psy16327 686 VPKAYERSFRWKLSQFRYLCHH-NVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFF 764 (994)
Q Consensus 686 ~~~~~~~~f~~k~~~fr~~~~~-~~~~~~~~i~V~R~~i~eds~~~l~~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ 764 (994)
+..+-..+|+.|+.+|+..+++ .+..+.+.|.|+|+.||+|+|+++...++++++.+|.|+|.||+|+|+||+.||||.
T Consensus 335 ~~~~~ll~F~~Kr~yf~r~L~~~~~~~~~~~v~v~R~~v~~~S~~~~~~~s~~e~~~rl~I~f~gEEg~D~gG~~rEw~~ 414 (720)
T KOG0939|consen 335 LKNPMLLDFDNKRKYFKRELRKEHASSEKLAVLVRRALVLEDSFRALLYKSPEELKTRLEVTFQGEEGSDAGGVTREWLQ 414 (720)
T ss_pred eecCcceecccHHHHHHHHHHHhhccCCcceEEEeHHHHHHHHHHHHHhCCHHHHhcceEEEEecccccccchHHHHHHH
Confidence 3456677999999999986643 334678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCccccCCCCceeeeCCCCCCCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhh
Q psy16327 765 LLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIE 844 (994)
Q Consensus 765 ll~~el~~p~~~lF~~~~~~~~~~~~np~s~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~ 844 (994)
+|+++||||+|+||....++.-++.|||+|+++|+||.||+|+||++|||||+|+++++.|++.|||+|||.++++.|++
T Consensus 415 ll~r~ifnp~~alf~~~~~d~tt~~pn~~s~~np~hLs~fkf~GriigKal~d~ql~~c~ftrsfyk~ilG~~v~~~d~e 494 (720)
T KOG0939|consen 415 LLSREIFNPRYALFTTVGSDQTTFHPNPNSYVNPEHLSYFKFVGRIIGKALFDGQLLECYFTRSFYKHILGLPVTYHDME 494 (720)
T ss_pred HHHHHHcCCCcceEEEcCCCceEEeeCCcccCChhhhhHHHhhHHHHHHHHhcchhhhheeeHHHHhhccCCceeeeehh
Confidence 99999999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHhHhhHHHHHhcCCCccceeeEEEEEEEecceeEeeeeccCCceeeeccchHHHHHHHHH----------------
Q psy16327 845 SIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYG---------------- 908 (994)
Q Consensus 845 ~vDp~l~~sL~~l~~~~~~~~~l~l~F~~~~~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~---------------- 908 (994)
+.||++|++|+||++|++++. |+++|+.+.+.+|..+.+||||||++|.||++||.|||++++
T Consensus 495 s~DP~y~k~l~~il~ndis~~-l~ltfs~e~~~~g~~~~~eL~p~G~~i~Vt~~nK~~yv~lv~q~rL~~~ir~ql~afl 573 (720)
T KOG0939|consen 495 SADPEYYKSLVWILKNDISDT-LELTFSEEDDEFGVESVVELKPGGAKIYVTEANKQEYVQLVTQYRLTNSIRKQLDAFL 573 (720)
T ss_pred hcChHHhhceeehhcCCcccc-eeEEEEEeeccccccceeecccCCCceeeccccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999999985 999999999999999999999999999999999999999988
Q ss_pred hcc--------------------ccc-----------eeeecC---------------------------ee---eeccC
Q psy16327 909 SGS--------------------SCE-----------RAIVRR---------------------------EP---VCFSS 927 (994)
Q Consensus 909 ~G~--------------------lcG-----------~t~y~~---------------------------qi---s~r~P 927 (994)
.|| +|| ||+|.+ || ++++|
T Consensus 574 ~Gl~~iip~~li~if~E~ELELLisGlpeidvdd~k~nt~y~~~~~~~~~i~wFWrav~sf~~eeraklLqFvTGtSkvP 653 (720)
T KOG0939|consen 574 AGLHEIIPKVLLSIFDEQELELLISGLPEIDVDDLKANTEYLGYTKASSVIQWFWRAVRSFDQEERAKLLQFVTGTSKVP 653 (720)
T ss_pred HHHHHhhHHHHHHHhhhHHHHHHHcCCCcccHHHHHhhhhhhcccccchHHHHHHHHHhhhcHHHHHhhHeeecccccCC
Confidence 244 888 677764 22 89999
Q ss_pred CCCCCCCCCCCCCCCcceeeeecC-CCCCCcEEeccccccccCCCCCHHHHHHHHHHHHHcC-CCCCC
Q psy16327 928 LPGHAVFPWEDLPNSWRFCIEKVG-KDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEET-EGFGQ 993 (994)
Q Consensus 928 ~~Gf~~l~~~~~~~~~~f~i~~~~-~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~~-~GFg~ 993 (994)
++||+.|.|.+ |.++|.|++.. ..++||+||||||+|+||.|.|||+|+++|+.||+|| +|||+
T Consensus 654 ~~GF~~l~g~n--g~q~fqi~~~~~s~d~LP~ahTCfnqL~LP~Y~Sye~l~~~LllAi~E~segfg~ 719 (720)
T KOG0939|consen 654 LGGFAALEGMN--GVQKFQIHADPGSTDRLPTAHTCFNQLFLPHYASYEQLRESLLLAINEGSEGFGM 719 (720)
T ss_pred cccccccccCC--cceeEEEEeCCCCCCCCcchhhhhhhhcCcchhhHHHHHHHHHHHHHhhhhccCc
Confidence 99999999988 99999999987 6799999999999999999999999999999999994 89996
No 3
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=100.00 E-value=2.1e-57 Score=516.75 Aligned_cols=272 Identities=42% Similarity=0.735 Sum_probs=251.0
Q ss_pred eEEEecCCccchHhHHHhhcCCccccCceeEEEEeCcccccCCchHHHHHHHHHHHHhCCCCCCccccCCCCceeeeCCC
Q psy16327 714 IKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPA 793 (994)
Q Consensus 714 ~~i~V~R~~i~eds~~~l~~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~~el~~p~~~lF~~~~~~~~~~~~np~ 793 (994)
.+|+|||++||+|++++|.+..+.+|+++|+|+|.||.|+|+|||+||||++|++|++++.++||+.++++...+++||.
T Consensus 1 ~~i~v~R~~i~~~~~~~l~~~~~~~l~~~l~V~F~gE~g~D~GG~~rE~~~~l~~el~~~~~~lF~~~~~~~~~~~~~p~ 80 (352)
T cd00078 1 LKITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVGEEGIDAGGVTREFFTLVSKELFNPSYGLFRYTPDDSGLLYPNPS 80 (352)
T ss_pred CeEEEECCcHHHHHHHHHHhcCHHHhcCceEEEECCCCccCCCcchHHHHHHHHHHHcCCCCCCeeecCCCCceEEeCCC
Confidence 37999999999999999999988889999999999999999999999999999999999999999988875567889999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChHhHhhHHHHHhcCCCccceeeEEEE
Q psy16327 794 SYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSV 873 (994)
Q Consensus 794 s~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l~~sL~~l~~~~~~~~~l~l~F~~ 873 (994)
+...++++++|+|+|++||+||+++.+++++|+++|||+|+|.+++++||+++||++|++|++|++++.+...++++|++
T Consensus 81 ~~~~~~~~~~f~~~G~lig~al~~~~~l~l~f~~~f~k~L~g~~~t~~Dl~~iD~~~~~sl~~l~~~~~~~~~l~l~F~~ 160 (352)
T cd00078 81 SFADEDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPELYKSLKELLDNDGDEDDLELTFTI 160 (352)
T ss_pred cccchhHHHHHHHHHHHHHHHHHcCceeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCCchhhhcceeEE
Confidence 88778899999999999999999999999999999999999999999999999999999999999988743468899999
Q ss_pred EEEe-cceeEeeeeccCCceeeeccchHHHHHHHHH----------------hcc--------------------ccc--
Q psy16327 874 DFEI-LGQVIHHELKENGDKIRVCEENKEEYMRWYG----------------SGS--------------------SCE-- 914 (994)
Q Consensus 874 ~~~~-~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~----------------~G~--------------------lcG-- 914 (994)
.... .|...++||+|||+++.||.+||++||++++ +|| +||
T Consensus 161 ~~~~~~~~~~~veL~~~G~~~~VT~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~lvcG~~ 240 (352)
T cd00078 161 ELDSSFGGAVTVELKPGGRDIPVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSE 240 (352)
T ss_pred EEeecCCCcceEecCCCCCCCcCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcCHHhhhCCCHHHHHHHhCCCC
Confidence 8877 8888999999999999999999999999988 355 899
Q ss_pred ---------eeeecC----------------------------ee---eeccCCCCCCCCCCCCCCCCcceeeeecCC-C
Q psy16327 915 ---------RAIVRR----------------------------EP---VCFSSLPGHAVFPWEDLPNSWRFCIEKVGK-D 953 (994)
Q Consensus 915 ---------~t~y~~----------------------------qi---s~r~P~~Gf~~l~~~~~~~~~~f~i~~~~~-~ 953 (994)
++.|.+ +| ++|+|++||+.+. ++|+|.+.+. +
T Consensus 241 ~id~~~l~~~~~y~~~~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TG~~rlP~~G~~~l~-------~~i~i~~~~~~~ 313 (352)
T cd00078 241 DIDLEDLKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLN-------PKFTIRRVGSPD 313 (352)
T ss_pred CCCHHHHHhceEecCCCCCCCHHHHHHHHHHHhCCHHHHHHhheeecCCCCCCCcchhhcC-------CCeEEEECCCCC
Confidence 677764 01 8899999999874 6899998876 8
Q ss_pred CCCcEEeccccccccCCCCCHHHHHHHHHHHHHcCCCCC
Q psy16327 954 TWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFG 992 (994)
Q Consensus 954 ~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~~~GFg 992 (994)
++||+||||||+|+||.|+|+|+|++||++||++|+|||
T Consensus 314 ~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~AI~~~~gF~ 352 (352)
T cd00078 314 DRLPTAHTCFNLLKLPPYSSKEILREKLLYAINEGAGFG 352 (352)
T ss_pred CCCCcchhhhccccCCCCCCHHHHHHHHHHHHHcCCCCC
Confidence 899999999999999999999999999999999999997
No 4
>KOG0941|consensus
Probab=100.00 E-value=1.7e-56 Score=518.83 Aligned_cols=272 Identities=33% Similarity=0.561 Sum_probs=248.2
Q ss_pred CCCceEEEecCCccchHhHHHhhcCCccccCceeEEEEeCcccccCCchHHHHHHHHHHHHhCCCCCCccccCCCCceee
Q psy16327 710 LPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQ 789 (994)
Q Consensus 710 ~~~~~~i~V~R~~i~eds~~~l~~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~~el~~p~~~lF~~~~~~~~~~~ 789 (994)
..++++|+|||++|++|++++|......||||.|+|+|.||+|+|+||+.||||.+|.+||++|.||||++..+.+ ++|
T Consensus 498 ~~p~l~l~VrR~~lv~Dsl~~l~~~~~~Dl~K~L~V~F~gE~g~DaGGv~kEfF~ll~~ei~~p~~GmF~~~e~s~-~~W 576 (850)
T KOG0941|consen 498 VSPYLKLTVRRDHLVEDALRQLSMISMSDLKKQLKVEFVGEEGVDAGGVRKEFFQLLVEEIFNPEYGMFTYDEESS-LLW 576 (850)
T ss_pred CCCcEEEEEehhhhHHHHHHHHHhhhhhhhhcceEEEECCCcccccCchHHHHHHHHHHHHcCccccCeecccccc-eee
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999998875 567
Q ss_pred eCCCCCCCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChHhHhhHHHHHhcCCCcc--ce
Q psy16327 790 INPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDEC--GL 867 (994)
Q Consensus 790 ~np~s~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l~~sL~~l~~~~~~~~--~l 867 (994)
+++...... .+|.+||++||+|||+...++++||.+|||+||+++++++||.++.|.++++|+.|++...++. .+
T Consensus 577 F~~~~~~~~---~~y~liGil~GLAIyN~~ildlpFPlAlykkLl~~~~sl~DL~elsP~~~~sL~~lL~y~gdd~ed~f 653 (850)
T KOG0941|consen 577 FNPSPFEEE---KQYHLIGILCGLAIYNNTILDLPFPLALYKKLLDKPPSLEDLKELSPSLGKSLKELLDYEGDDVEDVF 653 (850)
T ss_pred ecCCCCCcc---ceeeehhHHHHHHHhccceecCCCcHHHHHHHhcCCCCHHHHHhhChHhhhhHHHHHhccccchhhhe
Confidence 877664332 3788999999999999999999999999999999999999999999999999999998655332 69
Q ss_pred eeEEEEEEEecceeEeeeeccCCceeeeccchHHHHHHHHH----------------hcc--------------------
Q psy16327 868 ELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYG----------------SGS-------------------- 911 (994)
Q Consensus 868 ~l~F~~~~~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~----------------~G~-------------------- 911 (994)
+++|++..+.+|...+++|+|||.+|+||.+||+|||.+|+ +||
T Consensus 654 ~l~F~i~~~~~g~~~~~~L~~nG~~i~vt~~Nr~efV~~Yvd~~~n~sv~~q~~aF~~GF~~v~~~~~l~lf~peEl~~l 733 (850)
T KOG0941|consen 654 DLTFQISQDDNGIPRTYELKPNGDEIPVTNENRREFVNLYVDYILNKSVKKQFEAFRRGFYKVCDENLLRLFQPEELEKL 733 (850)
T ss_pred eeEEEEEehhcCccceeeccCCCcccccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhchhhhhhcCHHHHHHH
Confidence 99999999999999999999999999999999999999998 366
Q ss_pred ccc-----------eeeecC----------------------------ee---eeccCCCCCCCCCCCCCCCCcceeeee
Q psy16327 912 SCE-----------RAIVRR----------------------------EP---VCFSSLPGHAVFPWEDLPNSWRFCIEK 949 (994)
Q Consensus 912 lcG-----------~t~y~~----------------------------qi---s~r~P~~Gf~~l~~~~~~~~~~f~i~~ 949 (994)
+|| +|.|++ || ++|+|++|.+.| ++.|++
T Consensus 734 i~G~~~~Dw~~l~~~~~Y~ggy~~~~~~I~~FWe~~~~~~~~~kkkfL~F~TGsdRipv~G~~~l---------~~~i~~ 804 (850)
T KOG0941|consen 734 ICGSEDYDWKALEETTEYDGGYTSDSPTIQWFWEIFHAFTLEEKKKFLQFLTGSDRIPVGGLAKL---------KLVIQK 804 (850)
T ss_pred HhCCCccCHHHHhhhceecCcccCCChHHHHHHHHHHhCCHHHhhhheEeecCCCccccCChhhc---------eEEEec
Confidence 788 455654 11 899999999876 589999
Q ss_pred cCC-CCCCcEEeccccccccCCCCCHHHHHHHHHHHHHcCCCCCCC
Q psy16327 950 VGK-DTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQE 994 (994)
Q Consensus 950 ~~~-~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~~~GFg~~ 994 (994)
.+. .++||+||||||.|+||.|+|+|.|++||+.||++++|||+.
T Consensus 805 ~~~~~~~lP~shTCfN~L~Lp~YsskekL~~kL~~Ai~~~~GF~l~ 850 (850)
T KOG0941|consen 805 NGPDEDRLPVSHTCFNVLLLPEYSSKEKLEEKLLTAINNTEGFGLL 850 (850)
T ss_pred CCCCcccCcchhhhhhhhhccccCcHHHHHHHHHHHHHhccCcCCC
Confidence 886 579999999999999999999999999999999999999973
No 5
>KOG0942|consensus
Probab=100.00 E-value=1.9e-56 Score=518.56 Aligned_cols=298 Identities=29% Similarity=0.472 Sum_probs=268.3
Q ss_pred ccccchhhhhhhhhhhhhhccC------CC----CCceEEEecCCccchHhHHHhhcCCccccCceeEEEEeC-----cc
Q psy16327 687 PKAYERSFRWKLSQFRYLCHHN------VL----PSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRG-----EE 751 (994)
Q Consensus 687 ~~~~~~~f~~k~~~fr~~~~~~------~~----~~~~~i~V~R~~i~eds~~~l~~~~~~~l~~~l~V~F~G-----E~ 751 (994)
.+||..+|..++..|..++... .. .....++|||++|+||||.++......+||..++|+|++ |+
T Consensus 603 e~PF~vPF~~RVklfq~lla~dKq~~~~~~~F~~g~s~~~tIRRd~iyeDAfd~f~p~~e~dlk~~iRVtfVne~G~~Ea 682 (1001)
T KOG0942|consen 603 EIPFFVPFEERVKLFQRLLALDKQRHGGDGPFGMGFSPSATIRRDHIYEDAFDAFSPKGEPDLKSSIRVTFVNEHGVDEA 682 (1001)
T ss_pred cCCeeechHHHHHHHHHHHHHHHHhhcCCCCccCCCCccEEEehhhhHHHHHHhcCccCCcccccceEEEEecccCcccc
Confidence 5789999999999999876532 11 122689999999999999999998888899999999975 88
Q ss_pred cccCCchHHHHHHHHHHHHhCCCCCCccccCCCCceeeeCCCCCC--CchhhHHHHHHHHHHHHHHhcCCccccCCCHHH
Q psy16327 752 GLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYV--NPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPF 829 (994)
Q Consensus 752 GiD~GG~~REff~ll~~el~~p~~~lF~~~~~~~~~~~~np~s~~--~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f 829 (994)
|||.||++|||++.|+++.|||+||||..+.+ +-++|||.+.. ..+++++|.||||+||||||+|.+++++|+.+|
T Consensus 683 GIDGGGIfkEFLtel~ktaFdpn~GlF~~T~~--~lLYPNp~~~~l~~~~~lkhy~FLGrllGK~iYE~iLvdvpFA~FF 760 (1001)
T KOG0942|consen 683 GIDGGGIFKEFLTELLKTAFDPNYGLFKETED--HLLYPNPTAAMLLDVDCLKHYYFLGRLLGKCIYEGILVDVPFAEFF 760 (1001)
T ss_pred CccCcccHHHHHHHHHHhhcCccccceeeccc--ceecCCCCchhhhhhHHHHHHHHHHHHHHHHHHhcceecccHHHHH
Confidence 99999999999999999999999999998764 56899998763 456899999999999999999999999999999
Q ss_pred HHHHhccCC--ChhhhhccChHhHhhHHHHHhcCCCc-cceeeEEEEEEEecceeEeeeeccCCceeeeccchHHHHHHH
Q psy16327 830 YKRMLNKKL--VMKDIESIDPEFYNSLVWIRDNNIDE-CGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRW 906 (994)
Q Consensus 830 ~k~Ll~~~~--tl~DL~~vDp~l~~sL~~l~~~~~~~-~~l~l~F~~~~~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l 906 (994)
.++|+|..- .++||.++||++|++|..|++++.++ .+|+|+|++....+|+.+.|||||||++|+||.+|+.+||++
T Consensus 761 laKllg~~~~vd~~dL~SlDPeLY~nLifLk~y~gddi~eL~L~FtVv~~e~G~~~vVeLkPnGs~i~VTneNvi~YihL 840 (1001)
T KOG0942|consen 761 LAKLLGTSNDVDLHDLASLDPELYKNLIFLKNYNGDDISELQLDFTVVNSELGERQVVELKPNGSKIRVTNENVIEYIHL 840 (1001)
T ss_pred HHHHhCCCCCCChhhhcccCHHHHHHHHHHHhcCCCchhhccceEEEeccccccceeEEeccCCccceeechhhhhhhHH
Confidence 999999875 99999999999999999999988744 379999999999999999999999999999999999999999
Q ss_pred HH----------------hcc--------------------ccc------------eeeecC------e-------e---
Q psy16327 907 YG----------------SGS--------------------SCE------------RAIVRR------E-------P--- 922 (994)
Q Consensus 907 ~~----------------~G~--------------------lcG------------~t~y~~------q-------i--- 922 (994)
|+ .|| |.| ||+|.+ + |
T Consensus 841 VsnY~LN~rir~~c~AFr~Gls~II~~eWl~MF~~~ELQiLIsG~~~pidldDLr~~teY~Ggy~~~hp~Iv~FWeVl~~ 920 (1001)
T KOG0942|consen 841 VSNYKLNQRIRRQCSAFRKGLSQIISPEWLRMFNEHELQILISGAEDPIDLDDLRKNTEYAGGYSPDHPTIVMFWEVLEE 920 (1001)
T ss_pred hhhhHHHHHHHHHHHHHhcchhhcCCHHHHHhhChhheeeeecCCcCcccHHHHHhhccccCCCCCCCCchhHHHHHHHh
Confidence 98 265 556 888854 0 0
Q ss_pred ---------------eeccCCCCCCCCCCCCCCCCcceeeeecC-CCCCCcEEeccccccccCCCCCHHHHHHHHHHHHH
Q psy16327 923 ---------------VCFSSLPGHAVFPWEDLPNSWRFCIEKVG-KDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIE 986 (994)
Q Consensus 923 ---------------s~r~P~~Gf~~l~~~~~~~~~~f~i~~~~-~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~ 986 (994)
++|.|+.||+.|+ ++|||+..| ++++||||+||.|.|+||+|+++++||+||+|||+
T Consensus 921 F~~edKr~fLKFVTscsRpPllGFK~L~-------P~FcI~n~gsd~~RLPTASTCmNLLKLP~y~~kt~LreKLlYAI~ 993 (1001)
T KOG0942|consen 921 FSDEDKRKFLKFVTSCSRPPLLGFKALD-------PAFCIRNAGSDDDRLPTASTCMNLLKLPPYSNKTLLREKLLYAIN 993 (1001)
T ss_pred cchHHHHHHHHHHhcCCCcccccchhcC-------ccceeeeCCCccccCCcHHHHHHHhcCCCcccHHHHHHHHHHHHh
Confidence 7899999999996 689999998 56899999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy16327 987 ETEGFGQ 993 (994)
Q Consensus 987 ~~~GFg~ 993 (994)
-+.||+|
T Consensus 994 sgAGFeL 1000 (1001)
T KOG0942|consen 994 SGAGFEL 1000 (1001)
T ss_pred cccCCCC
Confidence 9999997
No 6
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=100.00 E-value=1.1e-52 Score=473.24 Aligned_cols=249 Identities=46% Similarity=0.791 Sum_probs=223.4
Q ss_pred ccccCce-eEEEEeCcccccCCchHHHHHHHHHHHHhCCCCCCccccCCCCceeeeCCCCCC-CchhhHHHHHHHHHHHH
Q psy16327 736 AYELRRR-LYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYV-NPDHLLYFKFIGRFIAM 813 (994)
Q Consensus 736 ~~~l~~~-l~V~F~GE~GiD~GG~~REff~ll~~el~~p~~~lF~~~~~~~~~~~~np~s~~-~~~~l~~f~fiGrlig~ 813 (994)
..++|++ |+|+|.||+|+|+|||+||||++|++|+++|+++||++++++ ..+++||.+.. +++|+++|+|+|++||+
T Consensus 4 ~~~~~~~~l~V~F~gE~g~d~gG~~rEf~~~l~~el~~~~~~lf~~~~~~-~~~~~~p~~~~~~~~~l~~f~~~G~lig~ 82 (336)
T smart00119 4 DEDLKKSVLEIEFEGEEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPND-YLLYPNPRAFFANPEHLAYFRFIGRVLGK 82 (336)
T ss_pred hHHhCCCeEEEEECCCCCccCCchHHHHHHHHHHHHhCcccCCceEcCCC-CeEEeCCCccccchHHHHHHHHHHHHHHH
Confidence 4578888 999999999999999999999999999999999999988764 46789998764 57899999999999999
Q ss_pred HHhcCCccccCCCHHHHHHHhccCCChhhhhccChHhHhhHHHH-HhcCCCccceeeEEEEEE-EecceeEeeeeccCCc
Q psy16327 814 ALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWI-RDNNIDECGLELYLSVDF-EILGQVIHHELKENGD 891 (994)
Q Consensus 814 ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l~~sL~~l-~~~~~~~~~l~l~F~~~~-~~~g~~~~~eL~~~G~ 891 (994)
||+++.+++++|+++|||+|+|.+++++||+++||++|++|++| ++++..+ .++++|++.. ...|...++||++||+
T Consensus 83 al~~~~~~~l~f~~~f~k~L~~~~~tl~Dl~~~D~~~~~sl~~l~~~~~~~~-~~~l~F~~~~~~~~g~~~~~eL~~~G~ 161 (336)
T smart00119 83 ALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLKWLLLNNDTSE-ELDLTFSIVLTSEFGQVKVVELKPGGS 161 (336)
T ss_pred HHHcCCeeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHHhCCCcc-cccceEEEEeeecCCCcceEecCCCCC
Confidence 99999999999999999999999999999999999999999999 5666554 4889998654 3477788999999999
Q ss_pred eeeeccchHHHHHHHHH----------------hcc--------------------ccc-----------eeeecC----
Q psy16327 892 KIRVCEENKEEYMRWYG----------------SGS--------------------SCE-----------RAIVRR---- 920 (994)
Q Consensus 892 ~i~VT~~Nk~eYv~l~~----------------~G~--------------------lcG-----------~t~y~~---- 920 (994)
++.||.+||++||++++ +|| +|| ++.|.+
T Consensus 162 ~~~Vt~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~i~~~~l~~~~~~~~g~~~ 241 (336)
T smart00119 162 NIPVTEENKKEYVHLVIEYRLNKGIEKQLEAFREGFSEVIPENLLRLFTPEELELLICGSPEIDVDDLKSNTEYKGGYSE 241 (336)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCHHHhhCCCHHHHHHHhCCCCCCCHHHHhhheEEcCCCCC
Confidence 99999999999999987 355 798 677863
Q ss_pred ------------------------ee---eeccCCCCCCCCCCCCCCCCcceeeeecC-CCCCCcEEeccccccccCCCC
Q psy16327 921 ------------------------EP---VCFSSLPGHAVFPWEDLPNSWRFCIEKVG-KDTWLPRSHTCFNRLDLPPYK 972 (994)
Q Consensus 921 ------------------------qi---s~r~P~~Gf~~l~~~~~~~~~~f~i~~~~-~~~~LP~A~TCfn~L~LP~Y~ 972 (994)
+| ++|+|++||+.+. ++|+|.+.+ ++++||+||||||+|+||.|+
T Consensus 242 ~~~~i~~Fw~vl~~~s~ee~~~fL~F~TG~~rlP~~G~~~l~-------~~~~i~~~~~~~~~LP~a~TCfn~L~LP~Ys 314 (336)
T smart00119 242 NSQTIKWFWEVVESFTNEERRKLLQFVTGSSRLPVGGFAALS-------PKFTIRKAGSDDDRLPTAHTCFNRLKLPPYS 314 (336)
T ss_pred CCHHHHHHHHHHHHCCHHHHHHhheeccCCCCCCCCchhhcC-------CceEEEECCCCCCCCCccccccCcCcCCCCC
Confidence 11 8899999999874 479999876 578999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCC
Q psy16327 973 SYDQMVEKLNYAIEETEGFGQ 993 (994)
Q Consensus 973 s~e~L~eKL~~AI~~~~GFg~ 993 (994)
|+|+|++||++||++|+||||
T Consensus 315 s~e~l~~kL~~AI~~~~gF~l 335 (336)
T smart00119 315 SKEILREKLLLAINEGKGFGL 335 (336)
T ss_pred CHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999997
No 7
>KOG4427|consensus
Probab=100.00 E-value=7.8e-52 Score=467.35 Aligned_cols=300 Identities=29% Similarity=0.465 Sum_probs=268.3
Q ss_pred CccccchhhhhhhhhhhhhhccC-----------CCCC-ceEEEecCCccchHhHHHhhcCCccccCceeEEEEeC----
Q psy16327 686 VPKAYERSFRWKLSQFRYLCHHN-----------VLPS-HIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRG---- 749 (994)
Q Consensus 686 ~~~~~~~~f~~k~~~fr~~~~~~-----------~~~~-~~~i~V~R~~i~eds~~~l~~~~~~~l~~~l~V~F~G---- 749 (994)
..+|.+.+++.++..||.+.+.. +.|. ...|.|||++|+||.|+||.++....||..++|+|++
T Consensus 672 ~~mpHviP~edRv~lFR~fVqkdKa~~~lv~ts~a~p~~~t~IvvrR~rivEDGf~qL~~l~~~alKs~IrVkFVNeqGl 751 (1096)
T KOG4427|consen 672 TKMPHVIPHEDRVLLFREFVQKDKASRGLVETSDASPARSTEIVVRRGRIVEDGFQQLNSLGSPALKSVIRVKFVNEQGL 751 (1096)
T ss_pred ccCCcccChHHHHHHHHHHHhhhHHhhcccccccCCccceeEEEEEcccchhhHHHHHHhccchhhhceEEEEEecccCC
Confidence 34688899999999999876542 2233 3799999999999999999999988899999999986
Q ss_pred -cccccCCchHHHHHHHHHHHHhCCCCCCccccCCCCceeeeCCCCCCCchhhHHHHHHHHHHHHHHhcCCccccCCCHH
Q psy16327 750 -EEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMP 828 (994)
Q Consensus 750 -E~GiD~GG~~REff~ll~~el~~p~~~lF~~~~~~~~~~~~np~s~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~ 828 (994)
|.|||+||+++||+.++.+.+|+|.++||..+..++ .++|+|.|+..++||++|+|+||++|+|+|+|+.+|++|+..
T Consensus 752 ~EAGiDqdGvfKEFLeeiiKkvFdp~lnLFstTs~d~-~LyPSPts~~~en~lqlfeFvGrmlGKAvYEGIvvDv~fa~v 830 (1096)
T KOG4427|consen 752 DEAGIDQDGVFKEFLEEIIKKVFDPELNLFSTTSTDR-RLYPSPTSYHHENHLQLFEFVGRMLGKAVYEGIVVDVPFASV 830 (1096)
T ss_pred cccccCccchHHHHHHHHHHHHhcccccccccCCCCc-eecCCchhhhhhchhHHHHHHHHHHHHHHhcceEEecccHHH
Confidence 778899999999999999999999999999888655 578999999999999999999999999999999999999999
Q ss_pred HHHHHhccCC--ChhhhhccChHhHhhHHHHHhcCCCccceeeEEEEEEEecceeEeeeeccCCceeeeccchHHHHHHH
Q psy16327 829 FYKRMLNKKL--VMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRW 906 (994)
Q Consensus 829 f~k~Ll~~~~--tl~DL~~vDp~l~~sL~~l~~~~~~~~~l~l~F~~~~~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l 906 (994)
|..+|||..- .+++|.++|||+|++|.+++..+.+-.+|+|+|+++.+..|.+.++||+|||+.|.||++||..||.+
T Consensus 831 flsqlLG~~~~s~~DELs~LDpElYrnLtfvKhYdgd~~dL~LtfSvdedfmGkis~~eL~PgGkt~sVtneNKi~YIH~ 910 (1096)
T KOG4427|consen 831 FLSQLLGRHSLSFIDELSSLDPELYRNLTFVKHYDGDLKDLCLTFSVDEDFMGKISTIELKPGGKTISVTNENKIQYIHA 910 (1096)
T ss_pred HHHHHhcccchhhhhhccccCHHHHhhhhHHHhhcccHhhheeeeEechhhccceeEEEeccCCcceeccccchHHHHHH
Confidence 9999999864 88999999999999999999998888789999999999999999999999999999999999999999
Q ss_pred HH----------------hcc--------------------ccc------------eeeecC------ee----------
Q psy16327 907 YG----------------SGS--------------------SCE------------RAIVRR------EP---------- 922 (994)
Q Consensus 907 ~~----------------~G~--------------------lcG------------~t~y~~------qi---------- 922 (994)
|+ +|| |.| ||.|-+ ++
T Consensus 911 MA~~rmnrqi~eqt~Af~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlWdIl~~ 990 (1096)
T KOG4427|consen 911 MAHFRMNRQIVEQTNAFYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLWDILAG 990 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHHHHHhc
Confidence 98 355 556 788865 11
Q ss_pred ----------------eeccCCCCCCCCCCCCCCCCcceeeee-------------------------cCCCCCCcEEec
Q psy16327 923 ----------------VCFSSLPGHAVFPWEDLPNSWRFCIEK-------------------------VGKDTWLPRSHT 961 (994)
Q Consensus 923 ----------------s~r~P~~Gf~~l~~~~~~~~~~f~i~~-------------------------~~~~~~LP~A~T 961 (994)
++|.|+.||+-|. ++|.|.. ..+-.|||+|+|
T Consensus 991 dFt~eERklfLKFVTSCSrpPlLGFayLe-------PpFsIrCVeVSdDqd~gdtiGSVvRGFfaiRKg~~~~RLPTaST 1063 (1096)
T KOG4427|consen 991 DFTPEERKLFLKFVTSCSRPPLLGFAYLE-------PPFSIRCVEVSDDQDTGDTIGSVVRGFFAIRKGQPVERLPTAST 1063 (1096)
T ss_pred cCChHHHHHHHHHHhhcCCCccccccccC-------CCceEEEEEecCcccchhhHhHHHHhhhhhhcCCccccCCchhh
Confidence 7899999999996 3555542 112369999999
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHcCCCCCC
Q psy16327 962 CFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQ 993 (994)
Q Consensus 962 Cfn~L~LP~Y~s~e~L~eKL~~AI~~~~GFg~ 993 (994)
|||.|+||.|.-+..|||||+|||..+.||.+
T Consensus 1064 CfNlLKLPnY~kkStlreKLrYAIssntGFEL 1095 (1096)
T KOG4427|consen 1064 CFNLLKLPNYKKKSTLREKLRYAISSNTGFEL 1095 (1096)
T ss_pred HHHhhhCCCcchhHHHHHHHHHHhhcCCCccc
Confidence 99999999999999999999999999999986
No 8
>KOG0940|consensus
Probab=100.00 E-value=1.2e-48 Score=434.06 Aligned_cols=280 Identities=49% Similarity=0.833 Sum_probs=261.3
Q ss_pred hhhhhhccCCCCCceEEEecCCccchHhHHHhhcCCccccCceeEEEEeCcccccCCchHHHHHHHHHHHHhCCCCCCcc
Q psy16327 700 QFRYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFE 779 (994)
Q Consensus 700 ~fr~~~~~~~~~~~~~i~V~R~~i~eds~~~l~~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~~el~~p~~~lF~ 779 (994)
+|+.+......+++++|+|+|+++|||+|++||+.+++++|+++++.|.||+|+|+||+.||||.++++|+|+|.+|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~f~~iM~~~~~~~~~~l~~~~~~ee~ldy~glprewf~~lS~e~~~p~~~~~~ 82 (358)
T KOG0940|consen 3 HFRVLPLPPQGPQQSHHKVDRDHLLEDSFNQIMNPKPSDLQKRLMREFKGEEGLDYGGLPREWFFLLSHEGFNPWYGLFQ 82 (358)
T ss_pred cccccccCCCCCceeEEEechhhhHHHHHHHHhCCCchhhhhcceeecccccccccCCCCcceeeeeccccCCcceeeee
Confidence 45555344567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceeeeCCCCCCCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChHhHhhHHHHHh
Q psy16327 780 YANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRD 859 (994)
Q Consensus 780 ~~~~~~~~~~~np~s~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l~~sL~~l~~ 859 (994)
++.++ |++++||.+.++|+||.+|+|+|++||+|++|+..++.. .++|||.|++++++++|++++|+++|+++.|+++
T Consensus 83 ~~~~~-~tlq~~P~sg~~p~~l~~~~~vg~~~~l~~~h~~~~~~g-~r~F~~~i~~ktt~ldd~e~~d~e~~~s~~~~~e 160 (358)
T KOG0940|consen 83 HSRKD-YTLWLNPRSGVNPGHLTYFRFVGGVLALAGWHMRFTDTG-QRPFYKHILKKTTTLDDREAVDPEFYNSLTWIRE 160 (358)
T ss_pred ecccc-cccccCCccCCCCCcccccccccccccccceeeEecCCC-ceehhhhhhcCccccCchhhcCcccccccccccc
Confidence 99998 999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCCccceeeEEEEEEEecceeEeeeeccCCceeeeccchHHHHHHHHH---------------hcc-------------
Q psy16327 860 NNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYG---------------SGS------------- 911 (994)
Q Consensus 860 ~~~~~~~l~l~F~~~~~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~---------------~G~------------- 911 (994)
+++.. +++|+++...+|+..+++|+|+|.++.||.+|+++||.++. .|+
T Consensus 161 n~~~~---~~~f~~~~~~~g~~~~~~l~p~g~~~~v~~~n~~~yi~~l~~r~~~~~~~q~~~l~~~~~~~~p~~~~~~~~ 237 (358)
T KOG0940|consen 161 NDPTN---DLTFSVESEVLGQITTQELKPNGANIQVTEENKKEYIMLLQNRFERGIQEQLKALLQGFNELLPQSLLRIFD 237 (358)
T ss_pred CCccc---chhhhcchhhcCCccceeecCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcccccccc
Confidence 99887 79999999999999999999999999999999999998884 133
Q ss_pred -------ccc-----------eeeecC------ee------------------------eeccCCCCCCCCCCCCCCCCc
Q psy16327 912 -------SCE-----------RAIVRR------EP------------------------VCFSSLPGHAVFPWEDLPNSW 943 (994)
Q Consensus 912 -------lcG-----------~t~y~~------qi------------------------s~r~P~~Gf~~l~~~~~~~~~ 943 (994)
+|| +++|++ +| ++++|..||+.|.+++ +++
T Consensus 238 e~~~e~~~~~~~~~~~~d~~~~t~~~~~~~~~~~i~wf~~~v~~~~~~~r~r~l~~~tg~~~vp~~~~~~l~~s~--~~~ 315 (358)
T KOG0940|consen 238 EMELELALSGDPEIDVNDWKQNTEYRGYSETDRQIDWFWNNVDEMDNEERIRLLQFVTGTSRVPVEGFAILSGSN--GPR 315 (358)
T ss_pred hhhHHHHhcCCcccchhHHhhhcccccccCCccccHHHHHhhhhcChHHHHhhhhccCCCccccccchhhccCCC--ccC
Confidence 666 566654 11 8999999999999998 999
Q ss_pred ceeeeecCCCCCCcEEeccccccccCCCCCHHHHHHHHHHHHH
Q psy16327 944 RFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIE 986 (994)
Q Consensus 944 ~f~i~~~~~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~ 986 (994)
+|||++.+..++||.+|||||+|+||+|.+++.|++||..||+
T Consensus 316 ~~~ie~~~~~~~~p~~htcfnrld~~~~~s~~~L~~kl~~ai~ 358 (358)
T KOG0940|consen 316 KFCIEKWGKSTQLPRSHTCFNRLDLPPYESYEPLREKLLLAIE 358 (358)
T ss_pred ceeecCcccccccchhcccccccccccccchhHHHHHHHHhcC
Confidence 9999998889999999999999999999999999999999985
No 9
>KOG0170|consensus
Probab=100.00 E-value=4.1e-43 Score=385.52 Aligned_cols=267 Identities=28% Similarity=0.402 Sum_probs=217.8
Q ss_pred CceEEEecCCccchHhHHHhhcCCccccCceeEEEEeCcccccCCchHHHHHHHHHHHHhCCCCCCcccc----------
Q psy16327 712 SHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYA---------- 781 (994)
Q Consensus 712 ~~~~i~V~R~~i~eds~~~l~~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~~el~~p~~~lF~~~---------- 781 (994)
..-|++|+|++||+.+.+.|.....+ +..|+|+|.+|.|.+.| |+-|||+++++|+..+..|||+..
T Consensus 224 ~RkK~risR~~Il~sa~kvm~~ygss--~~vLEIEY~~EvGTGLG-PTLEFYtlVSk~fq~~sLgmWR~~s~s~~~~k~~ 300 (621)
T KOG0170|consen 224 TRKKLRISRKTILASALKVMEKYGSS--KAVLEIEYEEEVGTGLG-PTLEFYTLVSKEFQRASLGMWRCNSVSYRSGKPQ 300 (621)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhcCC--cceEEEEeccccccCCC-cceeeHHHHHHHHhhccccccccCceeeccCCCC
Confidence 44689999999999999998876543 57899999999999996 999999999999999999999974
Q ss_pred CCCCc-----eeeeCCCCCC-----CchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChHhH
Q psy16327 782 NKNNY-----SLQINPASYV-----NPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFY 851 (994)
Q Consensus 782 ~~~~~-----~~~~np~s~~-----~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l~ 851 (994)
.+..+ .++|.|-... +...+++|+++|++||+||++++++|++|+.+|||.|+|.+++..|+..|||++.
T Consensus 301 ~~t~~v~~~sgLFp~P~~~ts~~se~~kvi~~F~~LG~~vAkal~D~Rildlpls~~Fykl~l~q~Lt~~dv~~vd~~l~ 380 (621)
T KOG0170|consen 301 ENTKDVYITSGLFPRPWPPTSNSSENEKVIELFRLLGTFVAKALQDGRILDLPLSKAFYKLILGQELTSHDVTTVDPELA 380 (621)
T ss_pred CCcchhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCceEeeeccHHHHHHHhcCCcccccceecCHHHH
Confidence 12221 2445443321 3346889999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhc----------------CCCc--------cceeeEEEEEEEecceeEeeeeccCCceeeeccchHHHHHHHH
Q psy16327 852 NSLVWIRDN----------------NIDE--------CGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWY 907 (994)
Q Consensus 852 ~sL~~l~~~----------------~~~~--------~~l~l~F~~~~~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~ 907 (994)
++|..|..- ..++ .+|+|+|+ ..|- ..+||+|||.+++||..|.+|||+.|
T Consensus 381 ~sL~~Le~vv~~k~~~~~~~~d~~~a~~dltl~g~~iEdL~LdFT----LPG~-p~ieL~p~g~~~~V~~~NleEYi~~V 455 (621)
T KOG0170|consen 381 KSLLELELVVPRKKKLEKYIGDVANADDDLTLNGCSIEDLSLDFT----LPGF-PDIELIPGGANKPVTISNLEEYIHGV 455 (621)
T ss_pred HHHHHHHHHhhhhhhhhhhcccccccccceeecCcchhhceeeEe----cCCC-CCeeeccCCCCCccccccHHHHHHHH
Confidence 999877421 1111 13444444 4443 57899999999999999999999999
Q ss_pred H----------------hcc--------------------ccc------------eeeecC-------------------
Q psy16327 908 G----------------SGS--------------------SCE------------RAIVRR------------------- 920 (994)
Q Consensus 908 ~----------------~G~--------------------lcG------------~t~y~~------------------- 920 (994)
+ +|| +|| |....|
T Consensus 456 Id~tv~kGVqkQleAFr~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~~DHGYT~~Sp~i~~li~ils~f 535 (621)
T KOG0170|consen 456 IDATVGKGVQKQLEAFRSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIKADHGYTMDSPIIHDLISILSAF 535 (621)
T ss_pred HHHHHhhhHHHHHHHHHhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhcccccCccCCCcHHHHHHHHhhhh
Confidence 8 254 788 222222
Q ss_pred ---------ee---eeccCCCCCCCCCCCCCCCCcceeeeecC------CCCCCcEEeccccccccCCCCCHHHHHHHHH
Q psy16327 921 ---------EP---VCFSSLPGHAVFPWEDLPNSWRFCIEKVG------KDTWLPRSHTCFNRLDLPPYKSYDQMVEKLN 982 (994)
Q Consensus 921 ---------qi---s~r~P~~Gf~~l~~~~~~~~~~f~i~~~~------~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~ 982 (994)
|| +.|+|+|||+.|. ++++|.+.- .|+.||+++||.|+|+||+|+|+|+|++||.
T Consensus 536 ~~~qQR~FLQFvTGSprLPiGGfasLN-------PklTIVrKh~e~~~t~Dd~LPSVMTCaNYLKLP~YSSkEiM~~kL~ 608 (621)
T KOG0170|consen 536 DKEQQRLFLQFVTGSPRLPIGGFASLN-------PKLTIVRKHAEDSETPDDYLPSVMTCANYLKLPPYSSKEIMRSKLL 608 (621)
T ss_pred chHHHHHHHHHhcCCCCCCCCcccccC-------CCeEEEeccCCCCCCcccccchHHHHHhhhcCCCCchHHHHHHHHH
Confidence 22 8999999999984 688887642 3678999999999999999999999999999
Q ss_pred HHHHcCCC-CCC
Q psy16327 983 YAIEETEG-FGQ 993 (994)
Q Consensus 983 ~AI~~~~G-Fg~ 993 (994)
+||+|++| |+|
T Consensus 609 ~Ai~EGqgSFhL 620 (621)
T KOG0170|consen 609 YAIEEGQGSFHL 620 (621)
T ss_pred HHHHcccccccc
Confidence 99999987 875
No 10
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=100.00 E-value=2.4e-39 Score=364.39 Aligned_cols=222 Identities=38% Similarity=0.548 Sum_probs=174.9
Q ss_pred HHHHHHHhCCCCCCccccCCCCceeeeCCCC-------CCCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHh-c
Q psy16327 764 FLLSHEVLNPMYCLFEYANKNNYSLQINPAS-------YVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRML-N 835 (994)
Q Consensus 764 ~ll~~el~~p~~~lF~~~~~~~~~~~~np~s-------~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll-~ 835 (994)
++||+|||+|+++||..++++. .+++||.. ...+.++++|+|||+|||+||++|.+++++|+++|||+|+ |
T Consensus 1 ~l~~~el~~~~~~lF~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~lig~ai~~~~~l~~~f~~~~~k~l~~g 79 (317)
T PF00632_consen 1 TLLCKELFDPNLGLFYQTSNNG-LFWPNPNSNRDSPSPASSEEHLKMFRFLGRLIGKAIRNGIPLPLPFSPAFWKYLLSG 79 (317)
T ss_dssp HHHHHHHTSGGGSSEESSTTTC-EEEEECCH----TTGGGSTTHHHHHHHHHHHHHHHHHTTS-ESSEB-HHHHHHHT-T
T ss_pred CHHHHHhcCccCCCceEcCCCC-EEeCCCcccccccccccCHHHHHHHHHHHHHHHHHHHcCCccccCcCHHHHHHHhcC
Confidence 5899999999999997776655 45566642 2345788999999999999999999999999999999999 9
Q ss_pred cCCChhhhhccChHhHhhHHHHHhcCCCc---cceeeEEEEEEEe-cceeEeeeeccCCceeeeccchHHHHHHHHH---
Q psy16327 836 KKLVMKDIESIDPEFYNSLVWIRDNNIDE---CGLELYLSVDFEI-LGQVIHHELKENGDKIRVCEENKEEYMRWYG--- 908 (994)
Q Consensus 836 ~~~tl~DL~~vDp~l~~sL~~l~~~~~~~---~~l~l~F~~~~~~-~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~--- 908 (994)
.+++++||+++|++++++|++|++++.++ .+++++|++.... .|...++||++||+++.||.+||++||++++
T Consensus 80 ~~~t~~Dl~~iD~~~~~sl~~l~~~~~~~~~~~~l~l~F~~~~~~~~~~~~~~eL~~~G~~~~Vt~~N~~eyv~~~~~~~ 159 (317)
T PF00632_consen 80 EPLTLEDLEEIDPELYKSLKKLLDMDNDEEDVEDLDLTFSVPSSSGGGQVEEVELIPGGSNIPVTNENKEEYVRLLAQYR 159 (317)
T ss_dssp ----HHHHHCCSHHHHHHHHHHHHSHSGSCTTSGCTEBSEEEEEECTTEEEEEESSTTGGGSB-TTTTHHHHHHHHHHHH
T ss_pred CCCccccchhcCchhhcchhhheeccccccceeecceEEEEecccccCceeEeeecCCCcccccchhhhhHHHHhhhhhh
Confidence 99999999999999999999999654332 2478899977543 5667789999999999999999999999987
Q ss_pred -------------hcc--------------------ccc------------eeeecC-------------ee--------
Q psy16327 909 -------------SGS--------------------SCE------------RAIVRR-------------EP-------- 922 (994)
Q Consensus 909 -------------~G~--------------------lcG------------~t~y~~-------------qi-------- 922 (994)
+|| +|| ++.|.+ ++
T Consensus 160 l~~~~~~~~~~~r~Gf~~vi~~~~l~~f~~~eL~~l~~G~~~~i~~~~l~~~~~~~~g~~~~~~~i~~fw~vl~~~s~~~ 239 (317)
T PF00632_consen 160 LNESVKKQLEAFRKGFYSVIPLELLSLFSPEELERLLCGSPEPIDVEDLKSNTRYEGGYTESSPVIQWFWEVLEEFSQEE 239 (317)
T ss_dssp HTTTTHHHHHHHHHHHHHHSSHHHHTTSSHHHHHHHHHCBSS---HHHHHHTEEEESSS-TTSHHHHHHHHHHHHS-HHH
T ss_pred cccccchhHHHHhcchhhcchhHHHHcCCHHHHHHHhcCccccCCHHHHHhcccchhccccccceeeEEeeeeccCCHHH
Confidence 255 888 466663 00
Q ss_pred ----------eeccCCCCCCCCCCCCCCCCcceeeeecCC--CCCCcEEeccccccccCCCCCHHHHHHHHHHHHHcC-C
Q psy16327 923 ----------VCFSSLPGHAVFPWEDLPNSWRFCIEKVGK--DTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEET-E 989 (994)
Q Consensus 923 ----------s~r~P~~Gf~~l~~~~~~~~~~f~i~~~~~--~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~~-~ 989 (994)
++|+|++||+.+. ++|+|...+. +++||+||||||+|+||.|+|+|+|++||++||+++ +
T Consensus 240 ~~~fL~F~TG~~~lP~~G~~~l~-------~~i~i~~~~~~~~~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~Ai~~~~~ 312 (317)
T PF00632_consen 240 RRKFLRFVTGSSRLPPGGFSNLN-------PKITIQFSDDSPDDRLPTAHTCFNTLKLPRYSSKEILREKLLYAIENGQE 312 (317)
T ss_dssp HHHHHHHHHSSSSB-TTGGGGGE--------EEEEEEESC-STTS--EEEGGGTEEEEEE-SSHHHHHHHHHHHHHHT--
T ss_pred hheeEEEecCCCCCCcccccccc-------ceeEEeecCCCccccCceecCcCCEEECCCCCCHHHHHHHHHHHHHcCCC
Confidence 8999999999774 6899998876 789999999999999999999999999999999999 9
Q ss_pred CCCC
Q psy16327 990 GFGQ 993 (994)
Q Consensus 990 GFg~ 993 (994)
|||+
T Consensus 313 gF~~ 316 (317)
T PF00632_consen 313 GFGL 316 (317)
T ss_dssp ----
T ss_pred CcCc
Confidence 9997
No 11
>KOG0943|consensus
Probab=99.91 E-value=1.4e-23 Score=244.54 Aligned_cols=185 Identities=26% Similarity=0.370 Sum_probs=140.2
Q ss_pred hhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChHhHhhHHHHHhcCCCccceeeEEEEEEE-ec
Q psy16327 800 HLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFE-IL 878 (994)
Q Consensus 800 ~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l~~sL~~l~~~~~~~~~l~l~F~~~~~-~~ 878 (994)
.|..|+-|||+||+||..|.+.|+.|++.+||+|||.++.|.|+..+||.+|++|..|....-.. +++-.|++-.. .-
T Consensus 2741 RLaafRniGRIlGiCL~Qgdi~PirfnRHifk~iL~l~icW~Df~FfDPVlfenLRaLfkAhpsS-d~DadFS~md~aa~ 2819 (3015)
T KOG0943|consen 2741 RLAAFRNIGRILGICLLQGDICPIRFNRHIFKVILGLKICWHDFAFFDPVLFENLRALFKAHPSS-DADADFSAMDLAAA 2819 (3015)
T ss_pred HHHHHHhhhhHhhhhhhcCcccceeehhHHHHHHhcCceehhhhccccHHHHHHHHHHHhcCCcc-cccchhhHHHHhhc
Confidence 46789999999999999999999999999999999999999999999999999999886533211 23334443211 11
Q ss_pred c------eeEeeeeccCCceeeeccchHHHHHHHHH----------------hcc--------------------ccc--
Q psy16327 879 G------QVIHHELKENGDKIRVCEENKEEYMRWYG----------------SGS--------------------SCE-- 914 (994)
Q Consensus 879 g------~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~----------------~G~--------------------lcG-- 914 (994)
| ...+|+|||||.+|+||.+|+-|||+.|+ +|+ |||
T Consensus 2820 gdlckee~a~qVeL~PNGdeilVnkdNViEYV~KYAE~~llgk~~i~feAiReGiLDViPenmL~~LT~EDfRLiicG~e 2899 (3015)
T KOG0943|consen 2820 GDLCKEEGAGQVELIPNGDEILVNKDNVIEYVRKYAEHRLLGKAEIPFEAIREGILDVIPENMLEDLTAEDFRLIICGCE 2899 (3015)
T ss_pred cchhhhcCceeEEEecCCceeeecchhHHHHHHHHHHhhhheeeeccHHHHHHhHHhhcchhhhcccCHhHheeeeeccc
Confidence 1 23679999999999999999999999988 233 787
Q ss_pred ---------eeeecC-----------------ee------------------eeccCCCCCCCCCCCCCCCCcceeeeec
Q psy16327 915 ---------RAIVRR-----------------EP------------------VCFSSLPGHAVFPWEDLPNSWRFCIEKV 950 (994)
Q Consensus 915 ---------~t~y~~-----------------qi------------------s~r~P~~Gf~~l~~~~~~~~~~f~i~~~ 950 (994)
+|-+.+ || +..+|..|-.. + ....+.| +-
T Consensus 2900 eVniqmL~e~TgFlDES~anaEkL~qFKqWFWqiiEkfs~qEkQdLVfFWTgSPaLPAa~e~~-p-----~~aSimi-RP 2972 (3015)
T KOG0943|consen 2900 EVNIQMLIEFTGFLDESGANAEKLLQFKQWFWQIIEKFSMQEKQDLVFFWTGSPALPAAEEGF-P-----PMASIMI-RP 2972 (3015)
T ss_pred ceehhHhhhhccccccccccHHHHHHHHHHHHHHHHHHhhhhhccEEEEecCCCCCCccccCC-C-----CCCceee-cC
Confidence 222221 11 56677654221 1 2233444 33
Q ss_pred CCCCCCcEEeccccccccCCCCCHHHHHHHHHHHHHcCCCCCC
Q psy16327 951 GKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQ 993 (994)
Q Consensus 951 ~~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~~~GFg~ 993 (994)
.+|..||+|+||..+|..|.|+|+.+||+||+.||.- ..||+
T Consensus 2973 ~dD~fLPTANTCISRLYVPlYSSKqiLkqKLLLAIKa-KNFGF 3014 (3015)
T KOG0943|consen 2973 PDDQFLPTANTCISRLYVPLYSSKQILKQKLLLAIKA-KNFGF 3014 (3015)
T ss_pred cccccCCcccchhhheeeechhhHHHHHHHHHHhhhc-ccccc
Confidence 5677999999999999999999999999999999985 45554
No 12
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5e-24 Score=258.78 Aligned_cols=126 Identities=30% Similarity=0.570 Sum_probs=115.6
Q ss_pred ccccccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcc
Q psy16327 2 EMTDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIE 81 (994)
Q Consensus 2 e~~~~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~ 81 (994)
-+.++++|..++|||| |||+||.||++|++ +||++|++|+|+++|++|+.||..||++|||.+
T Consensus 673 sve~~~fg~~~tVeLi-----pnG~ni~VT~~Nk~------------eYV~~vvdy~L~k~ie~Q~~AF~~GF~~ii~~~ 735 (872)
T COG5021 673 TVEDDSFGESRTVELI-----PNGRNISVTNENKK------------EYVKKVVDYKLNKRVEKQFSAFKSGFSEIIPPD 735 (872)
T ss_pred EEeecccCceeEEEec-----cCCccccccchHHH------------HHHHHHHHHHhhhhHHHHHHHHHhhHHHhcCHH
Confidence 3457889999999996 88999999999999 999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHcCCCc-cChhhhhhcceeCCccCCCcceeeEEEE--ecCcccccc---ccccccC
Q psy16327 82 WLKYFDERELELILCGMQE-IDVEDWQRNAIYRHYTRNSKQTTRVVKN--TYQPKWNEE---FTVGGQG 144 (994)
Q Consensus 82 ~L~~f~~~EL~~ll~G~~~-id~~~l~~~t~y~gy~~~s~~i~~fw~~--f~~~~e~~~---F~~~~~~ 144 (994)
+|.||++.|||+||||.++ ||++|||.||.|.||+++|++|+|||++ -|+.|+|+. |.++-.|
T Consensus 736 ~i~iF~e~ELe~LI~G~~e~iDidd~K~~T~Y~GY~~~s~~I~wFWeii~~f~~eer~klLQFvTGtsr 804 (872)
T COG5021 736 LLQIFDESELELLIGGIPEDIDIDDWKSNTAYHGYTEDSPIIVWFWEIISEFDFEERAKLLQFVTGTSR 804 (872)
T ss_pred HHhhcCHHHHHHHHCCCCccccHHHHhhcccccccccCCcHHHHHHHHHHHhCHHHHhhhheeccCCCC
Confidence 9999999999999999998 9999999999999999999999999995 466777776 4554444
No 13
>KOG0942|consensus
Probab=99.85 E-value=1.8e-22 Score=236.37 Aligned_cols=137 Identities=25% Similarity=0.461 Sum_probs=121.6
Q ss_pred CccccccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCc
Q psy16327 1 MEMTDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPI 80 (994)
Q Consensus 1 ~e~~~~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~ 80 (994)
|++.+..+|..++||| ||||++|+||++|+. +||+||++|+|+..|++|+.||++||..|||+
T Consensus 805 FtVv~~e~G~~~vVeL-----kPnGs~i~VTneNvi------------~YihLVsnY~LN~rir~~c~AFr~Gls~II~~ 867 (1001)
T KOG0942|consen 805 FTVVNSELGERQVVEL-----KPNGSKIRVTNENVI------------EYIHLVSNYKLNQRIRRQCSAFRKGLSQIISP 867 (1001)
T ss_pred EEEeccccccceeEEe-----ccCCccceeechhhh------------hhhHHhhhhHHHHHHHHHHHHHhcchhhcCCH
Confidence 4677888999999999 588999999999999 99999999999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHcCCCc-cChhhhhhcceeC-CccCCCcceeeEEEEecCccccccccccccC--------------
Q psy16327 81 EWLKYFDERELELILCGMQE-IDVEDWQRNAIYR-HYTRNSKQTTRVVKNTYQPKWNEEFTVGGQG-------------- 144 (994)
Q Consensus 81 ~~L~~f~~~EL~~ll~G~~~-id~~~l~~~t~y~-gy~~~s~~i~~fw~~f~~~~e~~~F~~~~~~-------------- 144 (994)
+||+||++.|||.||+|.++ ||++|||+||.|. ||+++||+|..||++ ..+|+.+++|
T Consensus 868 eWl~MF~~~ELQiLIsG~~~pidldDLr~~teY~Ggy~~~hp~Iv~FWeV------l~~F~~edKr~fLKFVTscsRpPl 941 (1001)
T KOG0942|consen 868 EWLRMFNEHELQILISGAEDPIDLDDLRKNTEYAGGYSPDHPTIVMFWEV------LEEFSDEDKRKFLKFVTSCSRPPL 941 (1001)
T ss_pred HHHHhhChhheeeeecCCcCcccHHHHHhhccccCCCCCCCCchhHHHHH------HHhcchHHHHHHHHHHhcCCCccc
Confidence 99999999999999999875 9999999999996 699999999999998 6677666666
Q ss_pred cCCCCCCCeEEEeecc
Q psy16327 145 GGLLKPNPYIELYVDY 160 (994)
Q Consensus 145 ~~f~~~dPyv~v~~~g 160 (994)
-||...||---|...|
T Consensus 942 lGFK~L~P~FcI~n~g 957 (1001)
T KOG0942|consen 942 LGFKALDPAFCIRNAG 957 (1001)
T ss_pred ccchhcCccceeeeCC
Confidence 2455556655555544
No 14
>KOG0939|consensus
Probab=99.83 E-value=7.6e-22 Score=226.53 Aligned_cols=117 Identities=31% Similarity=0.564 Sum_probs=109.8
Q ss_pred cccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCccccc
Q psy16327 5 DDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLK 84 (994)
Q Consensus 5 ~~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L~ 84 (994)
.+.+|...+|||+ |||++|.||.+|+. +||+|++++||..+|++|++||+.||++|||..+|.
T Consensus 524 ~~~~g~~~~~eL~-----p~G~~i~Vt~~nK~------------~yv~lv~q~rL~~~ir~ql~afl~Gl~~iip~~li~ 586 (720)
T KOG0939|consen 524 DDEFGVESVVELK-----PGGAKIYVTEANKQ------------EYVQLVTQYRLTNSIRKQLDAFLAGLHEIIPKVLLS 586 (720)
T ss_pred eccccccceeecc-----cCCCceeeccccHH------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHH
Confidence 4667888999995 88999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHcCCCccChhhhhhcceeCCccCCCcceeeEEEE--ecCccccccc
Q psy16327 85 YFDERELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKN--TYQPKWNEEF 138 (994)
Q Consensus 85 ~f~~~EL~~ll~G~~~id~~~l~~~t~y~gy~~~s~~i~~fw~~--f~~~~e~~~F 138 (994)
+|++.|||+||||.++|||+|||.||+|.||...+++|+|||++ .|+.+||+.|
T Consensus 587 if~E~ELELLisGlpeidvdd~k~nt~y~~~~~~~~~i~wFWrav~sf~~eerakl 642 (720)
T KOG0939|consen 587 IFDEQELELLISGLPEIDVDDLKANTEYLGYTKASSVIQWFWRAVRSFDQEERAKL 642 (720)
T ss_pred HhhhHHHHHHHcCCCcccHHHHHhhhhhhcccccchHHHHHHHHHhhhcHHHHHhh
Confidence 99999999999999999999999999999999999999999994 5667777773
No 15
>KOG0941|consensus
Probab=99.83 E-value=1.3e-21 Score=229.02 Aligned_cols=175 Identities=19% Similarity=0.251 Sum_probs=135.1
Q ss_pred ccccccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcc
Q psy16327 2 EMTDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIE 81 (994)
Q Consensus 2 e~~~~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~ 81 (994)
++..+.+|..+++||+ |||.+|+||++|++ |||.+|++|.++.+|++|++||++||+.||..+
T Consensus 658 ~i~~~~~g~~~~~~L~-----~nG~~i~vt~~Nr~------------efV~~Yvd~~~n~sv~~q~~aF~~GF~~v~~~~ 720 (850)
T KOG0941|consen 658 QISQDDNGIPRTYELK-----PNGDEIPVTNENRR------------EFVNLYVDYILNKSVKKQFEAFRRGFYKVCDEN 720 (850)
T ss_pred EEEehhcCccceeecc-----CCCcccccccccHH------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhchh
Confidence 3445667788899995 88999999999999 999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHcCCCccChhhhhhcceeCC-ccCCCcceeeEEEEecCccccccccccccCcCCCCCCCeEEEeecc
Q psy16327 82 WLKYFDERELELILCGMQEIDVEDWQRNAIYRH-YTRNSKQTTRVVKNTYQPKWNEEFTVGGQGGGLLKPNPYIELYVDY 160 (994)
Q Consensus 82 ~L~~f~~~EL~~ll~G~~~id~~~l~~~t~y~g-y~~~s~~i~~fw~~f~~~~e~~~F~~~~~~~~f~~~dPyv~v~~~g 160 (994)
.|++|.|+||+.||||+.++||+.|+.+|+|+| |+.+||+|+|||++| ..|+.+++|+.+.+..---.+.+.|
T Consensus 721 ~l~lf~peEl~~li~G~~~~Dw~~l~~~~~Y~ggy~~~~~~I~~FWe~~------~~~~~~~kkkfL~F~TGsdRipv~G 794 (850)
T KOG0941|consen 721 LLRLFQPEELEKLICGSEDYDWKALEETTEYDGGYTSDSPTIQWFWEIF------HAFTLEEKKKFLQFLTGSDRIPVGG 794 (850)
T ss_pred hhhhcCHHHHHHHHhCCCccCHHHHhhhceecCcccCCChHHHHHHHHH------HhCCHHHhhhheEeecCCCccccCC
Confidence 999999999999999999999999999999995 999999999999994 3445555544333333333556666
Q ss_pred CCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCccc
Q psy16327 161 KNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTI 207 (994)
Q Consensus 161 ~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~l 207 (994)
-..-|-.+.+ +..|.+. .|.+.-+|.+.+--+++.++.|
T Consensus 795 ~~~l~~~i~~---~~~~~~~-----lP~shTCfN~L~Lp~YsskekL 833 (850)
T KOG0941|consen 795 LAKLKLVIQK---NGPDEDR-----LPVSHTCFNVLLLPEYSSKEKL 833 (850)
T ss_pred hhhceEEEec---CCCCccc-----CcchhhhhhhhhccccCcHHHH
Confidence 4333322222 3444332 2455666777776667665433
No 16
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=99.81 E-value=3.6e-21 Score=217.47 Aligned_cols=114 Identities=34% Similarity=0.611 Sum_probs=104.3
Q ss_pred cCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcccccCC
Q psy16327 7 HYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYF 86 (994)
Q Consensus 7 ~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L~~f 86 (994)
.++...+|||| |||+++.||.+|++ +||+++++|+|.++++.|++||++||++|+|..+|++|
T Consensus 147 ~~g~~~~~eL~-----~~G~~~~Vt~~N~~------------eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f 209 (336)
T smart00119 147 EFGQVKVVELK-----PGGSNIPVTEENKK------------EYVHLVIEYRLNKGIEKQLEAFREGFSEVIPENLLRLF 209 (336)
T ss_pred cCCCcceEecC-----CCCCCCcCCHHHHH------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCHHHhhCC
Confidence 35667788985 88999999999999 99999999999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCCccChhhhhhcceeC-CccCCCcceeeEEEEe--cCcccccc
Q psy16327 87 DERELELILCGMQEIDVEDWQRNAIYR-HYTRNSKQTTRVVKNT--YQPKWNEE 137 (994)
Q Consensus 87 ~~~EL~~ll~G~~~id~~~l~~~t~y~-gy~~~s~~i~~fw~~f--~~~~e~~~ 137 (994)
+|+||+.|+||.++||+++|+++|+|+ ||++++++|+|||++. |++++|+.
T Consensus 210 ~~~eL~~licG~~~i~~~~l~~~~~~~~g~~~~~~~i~~Fw~vl~~~s~ee~~~ 263 (336)
T smart00119 210 TPEELELLICGSPEIDVDDLKSNTEYKGGYSENSQTIKWFWEVVESFTNEERRK 263 (336)
T ss_pred CHHHHHHHhCCCCCCCHHHHhhheEEcCCCCCCCHHHHHHHHHHHHCCHHHHHH
Confidence 999999999999999999999999999 8999999999999972 34444444
No 17
>KOG4427|consensus
Probab=99.81 E-value=8.2e-21 Score=216.78 Aligned_cols=121 Identities=28% Similarity=0.484 Sum_probs=111.5
Q ss_pred CccccccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCc
Q psy16327 1 MEMTDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPI 80 (994)
Q Consensus 1 ~e~~~~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~ 80 (994)
|.+..|.+|.-.+|||+ |||+.|.||++|+- .||++|+.|+|++.|.+|..||.+||.+||.+
T Consensus 875 fSvdedfmGkis~~eL~-----PgGkt~sVtneNKi------------~YIH~MA~~rmnrqi~eqt~Af~rG~rsii~P 937 (1096)
T KOG4427|consen 875 FSVDEDFMGKISTIELK-----PGGKTISVTNENKI------------QYIHAMAHFRMNRQIVEQTNAFYRGFRSIISP 937 (1096)
T ss_pred eEechhhccceeEEEec-----cCCcceeccccchH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 34667889999999995 88999999999999 99999999999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHcCCC-ccChhhhhhcceeC-CccCCCcceeeEEEE---ecCccccccc
Q psy16327 81 EWLKYFDERELELILCGMQ-EIDVEDWQRNAIYR-HYTRNSKQTTRVVKN---TYQPKWNEEF 138 (994)
Q Consensus 81 ~~L~~f~~~EL~~ll~G~~-~id~~~l~~~t~y~-gy~~~s~~i~~fw~~---f~~~~e~~~F 138 (994)
+||++|+|.||++||+|.. +||++|||+||+|- ||..+|++|+|||++ .|++|||..|
T Consensus 938 ~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlWdIl~~dFt~eERklf 1000 (1096)
T KOG4427|consen 938 EWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLWDILAGDFTPEERKLF 1000 (1096)
T ss_pred HHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHHHHHhccCChHHHHHH
Confidence 9999999999999999964 89999999999998 699999999999996 3667777765
No 18
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=99.79 E-value=3.2e-20 Score=211.86 Aligned_cols=113 Identities=34% Similarity=0.597 Sum_probs=103.7
Q ss_pred CCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcccccCCC
Q psy16327 8 YQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFD 87 (994)
Q Consensus 8 ~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L~~f~ 87 (994)
.+...+|||+ |||+++.||.+|++ +||+++++|+|+++++.|++||++||++|+|..+|++|+
T Consensus 166 ~~~~~~veL~-----~~G~~~~VT~~N~~------------eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~ 228 (352)
T cd00078 166 FGGAVTVELK-----PGGRDIPVTNENKE------------EYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFT 228 (352)
T ss_pred CCCcceEecC-----CCCCCCcCCHHHHH------------HHHHHHHHHHhcchHHHHHHHHHHHHHHHcCHHhhhCCC
Confidence 5667888995 88999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCccChhhhhhcceeCC-ccCCCcceeeEEEE--ecCcccccc
Q psy16327 88 ERELELILCGMQEIDVEDWQRNAIYRH-YTRNSKQTTRVVKN--TYQPKWNEE 137 (994)
Q Consensus 88 ~~EL~~ll~G~~~id~~~l~~~t~y~g-y~~~s~~i~~fw~~--f~~~~e~~~ 137 (994)
|+||+.|+||.++||+++|+++|+|+| |+.++++|+|||++ .|+++||+.
T Consensus 229 ~~eL~~lvcG~~~id~~~l~~~~~y~~~~~~~~~~i~~Fw~vl~~~s~eer~~ 281 (352)
T cd00078 229 PEELELLICGSEDIDLEDLKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKK 281 (352)
T ss_pred HHHHHHHhCCCCCCCHHHHHhceEecCCCCCCCHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999999995 77799999999997 344555555
No 19
>KOG0170|consensus
Probab=99.70 E-value=7.8e-18 Score=186.87 Aligned_cols=122 Identities=24% Similarity=0.377 Sum_probs=105.9
Q ss_pred EEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcccccCCCHHHHH
Q psy16327 13 IIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELE 92 (994)
Q Consensus 13 ~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L~~f~~~EL~ 92 (994)
.|||+ |||.|++||..|++ |||+.+++|.+.++|++|++||+.||++|+|.+.|++|+|+||.
T Consensus 431 ~ieL~-----p~g~~~~V~~~Nle------------EYi~~VId~tv~kGVqkQleAFr~GF~~VF~~~~Lqif~p~EL~ 493 (621)
T KOG0170|consen 431 DIELI-----PGGANKPVTISNLE------------EYIHGVIDATVGKGVQKQLEAFRSGFSSVFPYEHLQIFTPEELV 493 (621)
T ss_pred Ceeec-----cCCCCCccccccHH------------HHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhheeecCHHHHH
Confidence 47885 88999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHcCCC-ccChhhhhhcceeC-CccCCCcceeeEEEEe--cCcccccc---ccccccC---cCCCCCC
Q psy16327 93 LILCGMQ-EIDVEDWQRNAIYR-HYTRNSKQTTRVVKNT--YQPKWNEE---FTVGGQG---GGLLKPN 151 (994)
Q Consensus 93 ~ll~G~~-~id~~~l~~~t~y~-gy~~~s~~i~~fw~~f--~~~~e~~~---F~~~~~~---~~f~~~d 151 (994)
.|+||.. +|+++.|..|.+++ ||+.+||.|+.+..+. |+.+|+.. |.++.|| |+|...+
T Consensus 494 ~llcg~~e~ws~~TL~~~i~~DHGYT~~Sp~i~~li~ils~f~~~qQR~FLQFvTGSprLPiGGfasLN 562 (621)
T KOG0170|consen 494 TLLCGVEEDWSMATLMEHIKADHGYTMDSPIIHDLISILSAFDKEQQRLFLQFVTGSPRLPIGGFASLN 562 (621)
T ss_pred HHhccchhhccHHHHHHhcccccCccCCCcHHHHHHHHhhhhchHHHHHHHHHhcCCCCCCCCcccccC
Confidence 9999976 59999999999999 8999999999988763 33444443 5666666 6665443
No 20
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=99.69 E-value=6.2e-18 Score=190.70 Aligned_cols=118 Identities=33% Similarity=0.547 Sum_probs=101.8
Q ss_pred ceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcccccCCCHH
Q psy16327 10 LAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDER 89 (994)
Q Consensus 10 ~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L~~f~~~ 89 (994)
...++||+ +||+++.||.+|++ +||++++++++.++++.|++||++||.+|+|...|++|+++
T Consensus 128 ~~~~~eL~-----~~G~~~~Vt~~N~~------------eyv~~~~~~~l~~~~~~~~~~~r~Gf~~vi~~~~l~~f~~~ 190 (317)
T PF00632_consen 128 QVEEVELI-----PGGSNIPVTNENKE------------EYVRLLAQYRLNESVKKQLEAFRKGFYSVIPLELLSLFSPE 190 (317)
T ss_dssp EEEEEESS-----TTGGGSB-TTTTHH------------HHHHHHHHHHHTTTTHHHHHHHHHHHHHHSSHHHHTTSSHH
T ss_pred ceeEeeec-----CCCcccccchhhhh------------HHHHhhhhhhcccccchhHHHHhcchhhcchhHHHHcCCHH
Confidence 34567885 88999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCc-cChhhhhhcceeC-CccCCCcceeeEEEEe--cCcccccc---ccccccC
Q psy16327 90 ELELILCGMQE-IDVEDWQRNAIYR-HYTRNSKQTTRVVKNT--YQPKWNEE---FTVGGQG 144 (994)
Q Consensus 90 EL~~ll~G~~~-id~~~l~~~t~y~-gy~~~s~~i~~fw~~f--~~~~e~~~---F~~~~~~ 144 (994)
||+.++||..+ ||+++|+++++|+ ||++++++|+|||++. |++++|+. |.++..+
T Consensus 191 eL~~l~~G~~~~i~~~~l~~~~~~~~g~~~~~~~i~~fw~vl~~~s~~~~~~fL~F~TG~~~ 252 (317)
T PF00632_consen 191 ELERLLCGSPEPIDVEDLKSNTRYEGGYTESSPVIQWFWEVLEEFSQEERRKFLRFVTGSSR 252 (317)
T ss_dssp HHHHHHHCBSS---HHHHHHTEEEESSS-TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSS
T ss_pred HHHHHhcCccccCCHHHHHhcccchhccccccceeeEEeeeeccCCHHHhheeEEEecCCCC
Confidence 99999999999 9999999999999 8999999999999974 56666666 4555444
No 21
>KOG1030|consensus
Probab=99.64 E-value=3.9e-16 Score=153.63 Aligned_cols=75 Identities=28% Similarity=0.440 Sum_probs=69.1
Q ss_pred CC-CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhccc
Q psy16327 146 GL-LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHY 221 (994)
Q Consensus 146 ~f-~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~ 221 (994)
.| .++||||+|.+ |.|+.||+|+++++||+|||.|+|.|++ ...|.++|||+|+|++|||||+|.|+|..++...
T Consensus 22 D~~~sSDPyVVl~l-g~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 22 DFLGSSDPYVVLEL-GNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred ccccCCCCeEEEEE-CCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHh
Confidence 35 78999999999 5669999999999999999999998875 6799999999999999999999999999998864
No 22
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.61 E-value=3e-15 Score=145.51 Aligned_cols=103 Identities=41% Similarity=0.721 Sum_probs=93.6
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCccc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCE 226 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~~ 226 (994)
+.++||||+|.++|+..+||+++++++||.|||.|.|.+.+...|.|+|||++.+++|++||.+.++|++++...++..+
T Consensus 19 ~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~ 98 (125)
T cd04021 19 SFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTPQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLE 98 (125)
T ss_pred CCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCCCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCcc
Confidence 67899999999987768999999999999999999999998899999999999999999999999999999999888888
Q ss_pred eEEEEeecCCCCC---CCCCeEEEec
Q psy16327 227 HLEITLDLMNDSR---VSPPLMSVEM 249 (994)
Q Consensus 227 ~~~~~l~L~~~~~---~~~G~l~v~~ 249 (994)
+...+++|++.++ ...|+|.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 99 NVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred ceEEEEEEEccCCCcceeeeeEEEEe
Confidence 8778888886664 6789988865
No 23
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.57 E-value=1.4e-14 Score=140.03 Aligned_cols=99 Identities=16% Similarity=0.248 Sum_probs=83.3
Q ss_pred CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCccc
Q psy16327 148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCE 226 (994)
Q Consensus 148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~~ 226 (994)
..+||||+|.++++..+||++++||+||.|||+|.|.|.+ ...|.|.|||++++++|++||.+.|+|+++... ...
T Consensus 20 g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~---~~~ 96 (121)
T cd08401 20 KMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKY---YGK 96 (121)
T ss_pred CCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCC---CCc
Confidence 3679999999977767899999999999999999999976 479999999999999999999999999998653 234
Q ss_pred eEEEEeecCCCCCCCCCeEEEec
Q psy16327 227 HLEITLDLMNDSRVSPPLMSVEM 249 (994)
Q Consensus 227 ~~~~~l~L~~~~~~~~G~l~v~~ 249 (994)
..|+.|......+...|+|.|.+
T Consensus 97 ~~w~~L~~~~~~~~~~G~i~l~~ 119 (121)
T cd08401 97 DTWFPLQPVDADSEVQGKVHLEL 119 (121)
T ss_pred EeeEEEEccCCCCcccEEEEEEE
Confidence 56777766545556789988865
No 24
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.56 E-value=1.7e-14 Score=139.38 Aligned_cols=100 Identities=15% Similarity=0.253 Sum_probs=85.1
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCcc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKC 225 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~ 225 (994)
+.++||||++.++|...+||+++++++||+|||.|.|.+.. ...|.|.|||+|.+++|++||.+.|+|.++...
T Consensus 18 ~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~----- 92 (121)
T cd04042 18 GGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELN----- 92 (121)
T ss_pred CCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCC-----
Confidence 46799999999988678999999999999999999998764 679999999999999999999999999998753
Q ss_pred ceEEEEeecCCCCC-CCCCeEEEecCC
Q psy16327 226 EHLEITLDLMNDSR-VSPPLMSVEMPP 251 (994)
Q Consensus 226 ~~~~~~l~L~~~~~-~~~G~l~v~~~~ 251 (994)
...+.+++|.+.++ ...|+|.|.++.
T Consensus 93 ~~~~~~~~L~~~~~~~~~G~l~l~~~~ 119 (121)
T cd04042 93 KPTEVKLKLEDPNSDEDLGYISLVVTL 119 (121)
T ss_pred CCeEEEEECCCCCCccCceEEEEEEEE
Confidence 22446778876554 678999988754
No 25
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.56 E-value=1.5e-14 Score=139.38 Aligned_cols=100 Identities=18% Similarity=0.271 Sum_probs=78.9
Q ss_pred CCCCCCeEEEeeccCCceeeeeecC-CCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKN-TYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK 224 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~-tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~ 224 (994)
+.++||||+|.+++ ++.||+++++ ++||+|||+|.|.+.+ ...|.|+|||+|.+++|++||++.|+|.+.+.. |.
T Consensus 19 ~g~sDPYv~i~lg~-~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~--g~ 95 (121)
T cd04016 19 LTRMDPYCRIRVGH-AVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFN--GE 95 (121)
T ss_pred CCCCCceEEEEECC-EEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccC--CC
Confidence 67899999999955 5789999876 8999999999998865 468999999999999999999999999753332 23
Q ss_pred cceEEEEeecCCCC-CCCCCeEEEecCC
Q psy16327 225 CEHLEITLDLMNDS-RVSPPLMSVEMPP 251 (994)
Q Consensus 225 ~~~~~~~l~L~~~~-~~~~G~l~v~~~~ 251 (994)
....|+ +|...+ +...|+|+|.|++
T Consensus 96 ~~~~W~--~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 96 TLDDWY--SLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred CccccE--eCcCccCCCCceEEEEEEeC
Confidence 234445 454433 3567999998864
No 26
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.55 E-value=2.1e-14 Score=139.68 Aligned_cols=101 Identities=13% Similarity=0.200 Sum_probs=80.1
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-------CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-------YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-------~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
...+||||+|.+++ +++||+++++++||+|||.|.|.+.. ...|.|.|||++++++|++||.+.|+|+++..
T Consensus 17 ~g~~dpYv~v~l~~-~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~ 95 (126)
T cd08682 17 SGTNDAYVIIQLGK-EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDE 95 (126)
T ss_pred CcCCCceEEEEECC-eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhc
Confidence 45789999999954 58899999999999999999998755 46899999999999999999999999999974
Q ss_pred ccCCccceEEEEeecCCC-CCCCCCeEEEec
Q psy16327 220 HYNGKCEHLEITLDLMND-SRVSPPLMSVEM 249 (994)
Q Consensus 220 ~~~~~~~~~~~~l~L~~~-~~~~~G~l~v~~ 249 (994)
.. +.....|+.|.-+.. .....|+|.|.+
T Consensus 96 ~~-~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 96 DK-GRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred cC-CCcccEEEECcCCCCCCccccceEEEEe
Confidence 32 233345555543322 234689999875
No 27
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.51 E-value=9.4e-14 Score=134.64 Aligned_cols=101 Identities=29% Similarity=0.450 Sum_probs=82.5
Q ss_pred cCCCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCC--CcccceEEeehhhhhcccC
Q psy16327 145 GGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRR--DCTIGEKRLNIYGVLAHYN 222 (994)
Q Consensus 145 ~~f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~--d~~lG~~~i~l~~~~~~~~ 222 (994)
..+.++||||+|.++|.+.+||+++++++||.|||.|.|.+.+.+.|.|+|||++.+++ |++||.+.|+|.+++...+
T Consensus 16 ~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~ 95 (123)
T cd08382 16 DLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGPSSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKD 95 (123)
T ss_pred CCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCCCCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCC
Confidence 34678999999999877899999999999999999999999888999999999999875 5899999999999987654
Q ss_pred CccceEEEEeecCCC----CCCCCCeEEEec
Q psy16327 223 GKCEHLEITLDLMND----SRVSPPLMSVEM 249 (994)
Q Consensus 223 ~~~~~~~~~l~L~~~----~~~~~G~l~v~~ 249 (994)
+.. . +++|++. ++...|+|.+.+
T Consensus 96 ~~~--~--~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 96 TGY--Q--RLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred Ccc--c--eeEeecCCCCCCceEeeEEEEEe
Confidence 422 2 3344332 234578888875
No 28
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.51 E-value=7.8e-14 Score=137.28 Aligned_cols=105 Identities=19% Similarity=0.338 Sum_probs=83.1
Q ss_pred cCCCCCCCeEEEeecc------------CCceeeeeecCCCCCCc-ceEEEEEecCCCeEEEEEecCCCCCC---Ccccc
Q psy16327 145 GGLLKPNPYIELYVDY------------KNPKTTRVVKNTYQPKW-NEEFTVLVSPYSIILFRLLDHRTFRR---DCTIG 208 (994)
Q Consensus 145 ~~f~~~dPyv~v~~~g------------~~~~kT~v~k~tlnP~W-ne~f~~~v~~~~~l~~~V~D~d~~~~---d~~lG 208 (994)
..|.++||||+|.+.+ .+.+||+++++++||+| ||.|.|.+.++..|.|.|||++..++ |++||
T Consensus 16 ~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~~~L~v~V~D~~~~~~~~~~d~lG 95 (137)
T cd08691 16 GMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPTDVLEIEVKDKFAKSRPIIRRFLG 95 (137)
T ss_pred ccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCCCEEEEEEEecCCCCCccCCceEE
Confidence 3467899999999954 23689999999999999 99999999888899999999875443 78999
Q ss_pred eEEeehhhhhcccCCccceEEEEeecCCCCCCCCCeEEEec
Q psy16327 209 EKRLNIYGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEM 249 (994)
Q Consensus 209 ~~~i~l~~~~~~~~~~~~~~~~~l~L~~~~~~~~G~l~v~~ 249 (994)
.+.|+|++++...++.....++.|.-......+.|+|.+.+
T Consensus 96 ~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 96 KLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 99999999998876665444444432233346789888764
No 29
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.50 E-value=9.8e-14 Score=136.83 Aligned_cols=100 Identities=22% Similarity=0.379 Sum_probs=82.1
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK 224 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~ 224 (994)
+..+||||+|.++ .+.+||+++++++||.|||.|.|.+.+ ...|.|+|||+|.+++|++||.+.|+|.+++......
T Consensus 33 ~g~~DPYv~v~~~-~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~ 111 (136)
T cd08375 33 NGKSDPYCEVSMG-SQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKES 111 (136)
T ss_pred CCCcCcEEEEEEC-CEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccC
Confidence 5679999999995 458999999999999999999998865 4689999999999999999999999999998744333
Q ss_pred cceEEEEeecCCCCCCCCCeEEEecC
Q psy16327 225 CEHLEITLDLMNDSRVSPPLMSVEMP 250 (994)
Q Consensus 225 ~~~~~~~l~L~~~~~~~~G~l~v~~~ 250 (994)
...++..+.|. ....|+|.|.++
T Consensus 112 ~~~~~~~~~~~---~~~~g~i~l~~~ 134 (136)
T cd08375 112 KGPITKRLLLH---EVPTGEVVVKLD 134 (136)
T ss_pred CCcEEEEeccc---cccceeEEEEEE
Confidence 34444555552 456799888774
No 30
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.49 E-value=1.5e-13 Score=133.78 Aligned_cols=103 Identities=21% Similarity=0.236 Sum_probs=83.0
Q ss_pred CCCCCCeEEEeecc-CCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327 147 LLKPNPYIELYVDY-KNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK 224 (994)
Q Consensus 147 f~~~dPyv~v~~~g-~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~ 224 (994)
+..+||||++.+++ .+++||+++++|+||.|||.|.|.+.+ ...|.|+|||++.+++|++||.+.|+|.++.....+
T Consensus 15 ~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~- 93 (126)
T cd08678 15 AGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSG- 93 (126)
T ss_pred CCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCce-
Confidence 56899999999975 346899999999999999999998875 568999999999999999999999999999865432
Q ss_pred cceEEEEeecCCC-CCCCCCeEEEecCCc
Q psy16327 225 CEHLEITLDLMND-SRVSPPLMSVEMPPL 252 (994)
Q Consensus 225 ~~~~~~~l~L~~~-~~~~~G~l~v~~~~~ 252 (994)
..++.|..... +....|+|.|.+...
T Consensus 94 --~~~~~L~~~~~~~~~~~G~l~l~~~~~ 120 (126)
T cd08678 94 --RQIFPLQGRPYEGDSVSGSITVEFLFM 120 (126)
T ss_pred --eEEEEecCCCCCCCCcceEEEEEEEEe
Confidence 23444443322 345789999988653
No 31
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.49 E-value=1.3e-13 Score=133.22 Aligned_cols=102 Identities=26% Similarity=0.320 Sum_probs=83.0
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCC-CeEEEEEecCCCCCCCcccceEEeehhhhhcccCCcc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPY-SIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKC 225 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~-~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~ 225 (994)
+.++||||+|.++|+..+||+++++++||.|||.|.|.+... ..|.|.|||++.+++|++||.+.+++.++... +..
T Consensus 18 ~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~--~~~ 95 (121)
T cd04054 18 TGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAH--PRG 95 (121)
T ss_pred CCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccC--CCC
Confidence 457899999999877668999999999999999999988754 79999999999999999999999999888532 222
Q ss_pred ceEEEEeecCCCCCCCCCeEEEecC
Q psy16327 226 EHLEITLDLMNDSRVSPPLMSVEMP 250 (994)
Q Consensus 226 ~~~~~~l~L~~~~~~~~G~l~v~~~ 250 (994)
...|+.|...+..+...|+|.|.++
T Consensus 96 ~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 96 IDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCcEEECeeeCCCCccccEEEEEEE
Confidence 3456665545555567899988763
No 32
>KOG3209|consensus
Probab=99.49 E-value=9.3e-14 Score=159.18 Aligned_cols=171 Identities=29% Similarity=0.538 Sum_probs=122.0
Q ss_pred CCCCCCCCceEeecCCCCeeeeeCCCCcccccCCCCCCCCceeeeCCCCCeEEEeCCCCc---ccccCCchhhhhhcccc
Q psy16327 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRS---TTWQRPNSERLQHFKHW 446 (994)
Q Consensus 370 ~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~lp~gW~~~~~~~g~~yy~n~~t~~---t~w~~P~~~~~~~~~~~ 446 (994)
....||++|++.+...++.|+..++++.++|+.++++++||+.. +|..||+.+..+. +.|- |.
T Consensus 129 ~~~~~~~~~~es~~kr~~sy~~m~n~g~~~~eeeee~d~g~~n~---~~~~~~~E~~e~s~~~s~~m-~s---------- 194 (984)
T KOG3209|consen 129 QELLLPPNSAESYRKRTKSYSIMENAGITTPEEEEEEDPGWENG---SGQNYSVEMEESSYPTSSDM-PS---------- 194 (984)
T ss_pred ccccCCCcchhcccccCcceeehhccCCCCcccccccCcccccc---CCcccchhhhhccCCccCCC-cc----------
Confidence 34689999999999999999999999999999999999999764 5667766554332 1111 00
Q ss_pred ccccccccccCCccccCCCCCcCCCCCCccccCCCcccccccccCceeeeccCCCCCCCCCCCCCCCCceEEeCCCCCeE
Q psy16327 447 QGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVY 526 (994)
Q Consensus 447 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~t~~~~~~~~~~lp~gW~~~~~~~gr~y 526 (994)
.++-| +.+.+. +..+ .....+.-+..+|||..||+.++..|.+|
T Consensus 195 -------------sy~aP-----sts~s~---------~~~~---------~~~~~~~e~~~gplp~nwemayte~gevy 238 (984)
T KOG3209|consen 195 -------------SYFAP-----STSQST---------TPMD---------RYSPATQEDNLGPLPHNWEMAYTEQGEVY 238 (984)
T ss_pred -------------ccccc-----ccCCCC---------Cccc---------ccCccccccccCCCCccceEeEeecCeeE
Confidence 00000 000000 0000 00111222445689999999999999999
Q ss_pred EEeCCCCceeccCCChhhhhcccccccccccccccCCccccCCCCCCCcCCCCccccCCCcccccccCCCCCCCceEEEc
Q psy16327 527 YVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQ 606 (994)
Q Consensus 527 y~~~~t~~t~w~~P~~~~~~~~~~~~~~r~~~~~q~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LP~gWe~~~~ 606 (994)
|+||+|++|+|.+||....+ -+.+.+..+.||.||++..+
T Consensus 239 fiDhntkttswLdprl~kka----------------------------------------K~~eeckd~elPygWeki~d 278 (984)
T KOG3209|consen 239 FIDHNTKTTSWLDPRLTKKA----------------------------------------KPPEECKDQELPYGWEKIED 278 (984)
T ss_pred eeecccccceecChhhhccc----------------------------------------CChhhcccccccccccccCC
Confidence 99999999999999964211 11233445679999999999
Q ss_pred CCCceEEEecCCcccccCCCCccc
Q psy16327 607 PDGRVYFVNHKNRTTQWEDPRTQG 630 (994)
Q Consensus 607 ~~g~vyfvnh~t~~t~w~dPr~~~ 630 (994)
+-...|||+|.|+.++++.|-...
T Consensus 279 piYg~yyvdHiN~~sq~enpvlea 302 (984)
T KOG3209|consen 279 PIYGTYYVDHINRKSQYENPVLEA 302 (984)
T ss_pred ccceeEEecccchhhhhccchhhc
Confidence 999999999999999999997644
No 33
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.49 E-value=1e-13 Score=135.05 Aligned_cols=101 Identities=18% Similarity=0.203 Sum_probs=81.3
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-----CCeEEEEEecCCCCC-CCcccceEEeehhhhhcc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-----YSIILFRLLDHRTFR-RDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-----~~~l~~~V~D~d~~~-~d~~lG~~~i~l~~~~~~ 220 (994)
...+||||+|.++++ ++||+++++++||+|||.|.|.+.. ...|.|.|||++++. +|++||.+.|+|+++...
T Consensus 18 ~g~~dpyv~v~~~~~-~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~ 96 (127)
T cd04022 18 QGSSSAYVELDFDGQ-KKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPP 96 (127)
T ss_pred CCCcCcEEEEEECCE-EecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCC
Confidence 457899999999664 8899999999999999999998864 247999999999987 899999999999999732
Q ss_pred cCCccceEEEEeecCCCCCCCCCeEEEecC
Q psy16327 221 YNGKCEHLEITLDLMNDSRVSPPLMSVEMP 250 (994)
Q Consensus 221 ~~~~~~~~~~~l~L~~~~~~~~G~l~v~~~ 250 (994)
+.....|+.|.-....+...|+|.|.+.
T Consensus 97 --~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 124 (127)
T cd04022 97 --SEAVVQRYPLEKRGLFSRVRGEIGLKVY 124 (127)
T ss_pred --CCccceEeEeeeCCCCCCccEEEEEEEE
Confidence 2334556666544334467899988774
No 34
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.48 E-value=1.6e-13 Score=133.63 Aligned_cols=103 Identities=22% Similarity=0.244 Sum_probs=82.8
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK 224 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~ 224 (994)
+..+||||+|.+++ +++||+++++++||.|||.|.|.+.. ...|.|.|||++.+++|++||.+.|+|.++.......
T Consensus 21 ~~~~dPyv~v~~~~-~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~ 99 (128)
T cd04024 21 KGKSDPYAILSVGA-QRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTG 99 (128)
T ss_pred CCCcCCeEEEEECC-EEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccC
Confidence 56789999999954 58999999999999999999998874 6799999999999999999999999999998532333
Q ss_pred cceEEEEeecCCCC--CCCCCeEEEecC
Q psy16327 225 CEHLEITLDLMNDS--RVSPPLMSVEMP 250 (994)
Q Consensus 225 ~~~~~~~l~L~~~~--~~~~G~l~v~~~ 250 (994)
....|+.|.-+... ..+.|+|.|.++
T Consensus 100 ~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 100 QSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred ccceeEEccCcccCccccccceEEEEEE
Confidence 34555655544222 357899998763
No 35
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.47 E-value=1.7e-13 Score=132.36 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=78.3
Q ss_pred CCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccC--Cc
Q psy16327 149 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN--GK 224 (994)
Q Consensus 149 ~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~--~~ 224 (994)
++||||+|.+++ +++||+++++|+||+|||+|.|.+.. ...|.|.|||+|++ +|++||.+.|+|+++..... +.
T Consensus 16 ~~Dpyv~v~l~~-~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~~~i~l~~l~~~~~~~~~ 93 (121)
T cd08378 16 SNDPVVEVKLGN-YKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGGVCFDLSEVPTRVPPDSP 93 (121)
T ss_pred cCCCEEEEEECC-ccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeeeEEEEhHhCcCCCCCCCC
Confidence 689999999965 58999999999999999999998764 56899999999988 78899999999999865422 22
Q ss_pred cceEEEEeecCCCCCCCCCeEEEec
Q psy16327 225 CEHLEITLDLMNDSRVSPPLMSVEM 249 (994)
Q Consensus 225 ~~~~~~~l~L~~~~~~~~G~l~v~~ 249 (994)
....|+.|.-.+. ....|+|.|.+
T Consensus 94 ~~~~W~~L~~~~~-~~~~G~i~l~~ 117 (121)
T cd08378 94 LAPQWYRLEDKKG-GRVGGELMLAV 117 (121)
T ss_pred CCcceEEccCCCC-CccceEEEEEE
Confidence 3455665543332 46789988765
No 36
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.47 E-value=2e-13 Score=132.43 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=74.2
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec-CCCeEEEEEecCCCC------CCCcccceEEeehhhhhc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTF------RRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~-~~~~l~~~V~D~d~~------~~d~~lG~~~i~l~~~~~ 219 (994)
...+||||+|++++ ++.||+++++++||+|||+|.|.+. +.+.|.|+|||++.+ ++|++||++.|+|+++..
T Consensus 21 ~g~sDPYv~i~~g~-~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~ 99 (126)
T cd08379 21 RGSTDAYCVAKYGP-KWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLED 99 (126)
T ss_pred CCCCCeeEEEEECC-EEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccC
Confidence 56899999999954 4889999999999999999999875 467899999999987 489999999999999865
Q ss_pred ccCCccceEEEEeecCCCC---CCCCCeEEE
Q psy16327 220 HYNGKCEHLEITLDLMNDS---RVSPPLMSV 247 (994)
Q Consensus 220 ~~~~~~~~~~~~l~L~~~~---~~~~G~l~v 247 (994)
. .... .+++|...+ ....|+|..
T Consensus 100 ~---~~~~--~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 100 D---RVYA--HSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred C---CEEe--eEEEeEeCCCCCccCCcEEEe
Confidence 3 2223 444555322 235667653
No 37
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.47 E-value=1.6e-13 Score=137.20 Aligned_cols=97 Identities=18% Similarity=0.362 Sum_probs=81.1
Q ss_pred CCCCeEEEee----ccCCceeeeeecCCCCCCcceEEEEEecCC----------CeEEEEEecCCCC-CCCcccceEEee
Q psy16327 149 KPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSPY----------SIILFRLLDHRTF-RRDCTIGEKRLN 213 (994)
Q Consensus 149 ~~dPyv~v~~----~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~----------~~l~~~V~D~d~~-~~d~~lG~~~i~ 213 (994)
.+||||++.+ ++.+++||+|+++|+||+|||+|.|.|... ..|.|.|||++.| ++|++||++.|+
T Consensus 24 ~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~ 103 (155)
T cd08690 24 DLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVK 103 (155)
T ss_pred CCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEE
Confidence 5899999987 566789999999999999999999988643 3699999999987 689999999999
Q ss_pred hhhhhcccCCccceEEEEeecCCCCCCCCCeEEEecC
Q psy16327 214 IYGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEMP 250 (994)
Q Consensus 214 l~~~~~~~~~~~~~~~~~l~L~~~~~~~~G~l~v~~~ 250 (994)
|..+.... .+..+++|.+..+..+|+|.|.+.
T Consensus 104 L~~l~~~~-----~~~~~~~L~~~~k~~Gg~l~v~ir 135 (155)
T cd08690 104 LEPLETKC-----EIHESVDLMDGRKATGGKLEVKVR 135 (155)
T ss_pred cccccccC-----cceEEEEhhhCCCCcCCEEEEEEE
Confidence 99985442 133577888888888998877764
No 38
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.46 E-value=3.5e-13 Score=131.31 Aligned_cols=101 Identities=22% Similarity=0.293 Sum_probs=83.8
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec----CCCeEEEEEecCCCCCCCcccceEEeehhhhhcccC
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN 222 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~----~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~ 222 (994)
+.++||||+|.+++. ++||+++++++||+|||+|.|.+. ....|.|+|||++++++|++||.+.++|.++...
T Consensus 12 ~g~~Dpyv~v~~~~~-~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~-- 88 (127)
T cd08373 12 KGKGDRIAKVTFRGV-KKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSE-- 88 (127)
T ss_pred CCCCCCEEEEEECCE-eeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccC--
Confidence 567999999999765 789999999999999999999884 4579999999999999999999999999999753
Q ss_pred CccceEEEEeecCCCCC-CCCCeEEEecCCcC
Q psy16327 223 GKCEHLEITLDLMNDSR-VSPPLMSVEMPPLL 253 (994)
Q Consensus 223 ~~~~~~~~~l~L~~~~~-~~~G~l~v~~~~~~ 253 (994)
.....+++|.+.++ ...|+|.+.+++..
T Consensus 89 ---~~~~~~~~L~~~~~~~~~~~l~l~~~~~~ 117 (127)
T cd08373 89 ---GLLEVTEPLLDSNGRPTGATISLEVSYQP 117 (127)
T ss_pred ---CceEEEEeCcCCCCCcccEEEEEEEEEeC
Confidence 22345677775544 34689999887654
No 39
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.45 E-value=3e-13 Score=128.71 Aligned_cols=97 Identities=24% Similarity=0.272 Sum_probs=79.0
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK 224 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~ 224 (994)
..++||||+|.++++..+||+++++++||.|||.|.|.+.+ .+.|.|.|||++.+ +|++||.+.|+|+++++...
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~-- 86 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATS-- 86 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhh--
Confidence 45689999999987667899999999999999999998875 46899999999999 89999999999999976422
Q ss_pred cceEEEEeecCCCCCCCCCeEEEecCC
Q psy16327 225 CEHLEITLDLMNDSRVSPPLMSVEMPP 251 (994)
Q Consensus 225 ~~~~~~~l~L~~~~~~~~G~l~v~~~~ 251 (994)
... .++.|.+ ...|+|.|.+..
T Consensus 87 ~~~--~w~~L~~---~~~G~i~~~~~~ 108 (111)
T cd04052 87 VGQ--QWFPLSG---NGQGRIRISALW 108 (111)
T ss_pred ccc--eeEECCC---CCCCEEEEEEEE
Confidence 223 3444543 357998887654
No 40
>KOG1891|consensus
Probab=99.45 E-value=6.5e-14 Score=140.87 Aligned_cols=70 Identities=39% Similarity=0.921 Sum_probs=66.4
Q ss_pred CCCCCCCCCCceEeecCCCCeeeeeCCCCcccccCC---CCCCCCceeeeCCCCCeEEEeCCCCcccccCCch
Q psy16327 368 LPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP---QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS 437 (994)
Q Consensus 368 ~~~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P---~~lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~~ 437 (994)
-+.+.||||||....+-.||.|||||++++|+|.|| ++||+||++.++++-.+||+|+.+|++++++|+.
T Consensus 88 ~sedlPLPpgWav~~T~~grkYYIDHn~~tTHW~HPlerEgLppGW~rv~s~e~GtyY~~~~~k~tQy~HPc~ 160 (271)
T KOG1891|consen 88 CSEDLPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLEREGLPPGWKRVFSPEKGTYYYHEEMKRTQYEHPCI 160 (271)
T ss_pred CcccCCCCCCcceeeEecCceeEeecCCCcccccChhhhccCCcchhhccccccceeeeecccchhhhcCCCC
Confidence 346779999999999999999999999999999999 7899999999999999999999999999999983
No 41
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.45 E-value=2.4e-13 Score=130.62 Aligned_cols=84 Identities=19% Similarity=0.189 Sum_probs=67.9
Q ss_pred CCCCCeEEEeecc----C--CceeeeeecCCCCCCcceEEEEEecCC-----CeEEEEEecCCCCCCCcccceEEeehhh
Q psy16327 148 LKPNPYIELYVDY----K--NPKTTRVVKNTYQPKWNEEFTVLVSPY-----SIILFRLLDHRTFRRDCTIGEKRLNIYG 216 (994)
Q Consensus 148 ~~~dPyv~v~~~g----~--~~~kT~v~k~tlnP~Wne~f~~~v~~~-----~~l~~~V~D~d~~~~d~~lG~~~i~l~~ 216 (994)
.++||||+|.+.| . +++||+++++|+||+|||+|.|.+... ..|.|.|||+|.+++|++||.+.|+|++
T Consensus 18 g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~ 97 (120)
T cd08395 18 GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRD 97 (120)
T ss_pred CCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHH
Confidence 5789999999843 2 346899999999999999999988632 3699999999988889999999999999
Q ss_pred hhcccCCccceEEEEeecCC
Q psy16327 217 VLAHYNGKCEHLEITLDLMN 236 (994)
Q Consensus 217 ~~~~~~~~~~~~~~~l~L~~ 236 (994)
+.... ....+++|.+
T Consensus 98 ~~~~~-----~~~~w~~L~~ 112 (120)
T cd08395 98 IAQAG-----SCACWLPLGR 112 (120)
T ss_pred CcCCC-----cEEEEEECcC
Confidence 97542 2335556653
No 42
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.43 E-value=5.4e-13 Score=130.91 Aligned_cols=96 Identities=19% Similarity=0.233 Sum_probs=80.2
Q ss_pred CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCccce
Q psy16327 148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCEH 227 (994)
Q Consensus 148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~~~ 227 (994)
..+||||+|.+++++.+||+++++|+||.|||+|+|.+.+...|.|.|||++.+++|++||.+.|+|.++.... +....
T Consensus 33 g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~-~~~~~ 111 (132)
T cd04014 33 QLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHNGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRG-SGSFD 111 (132)
T ss_pred cCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCCCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccC-CCccc
Confidence 46899999999887678999999999999999999999888999999999999999999999999999998741 22234
Q ss_pred EEEEeecCCCCCCCCCeEEEecCC
Q psy16327 228 LEITLDLMNDSRVSPPLMSVEMPP 251 (994)
Q Consensus 228 ~~~~l~L~~~~~~~~G~l~v~~~~ 251 (994)
.|+. |+ ..|+|.|.+..
T Consensus 112 ~w~~--L~-----~~G~l~l~~~~ 128 (132)
T cd04014 112 LWVD--LE-----PQGKLHVKIEL 128 (132)
T ss_pred EEEE--cc-----CCcEEEEEEEE
Confidence 4554 43 45888887654
No 43
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.43 E-value=6.6e-13 Score=127.14 Aligned_cols=94 Identities=17% Similarity=0.328 Sum_probs=77.6
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK 224 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~ 224 (994)
+..+||||++.+++ +++||+++++|+||.|||.|.|.+.+ ...|.|.|||++.+++|++||.+.++|+++... .
T Consensus 18 ~~~~dPyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~---~ 93 (116)
T cd08376 18 NGLSDPYVKFRLGN-EKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPRE---Q 93 (116)
T ss_pred CCCCCcEEEEEECC-EeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCC---C
Confidence 45789999999965 48999999999999999999998765 579999999999999999999999999998653 2
Q ss_pred cceEEEEeecCCCCCCCCCeEEEecC
Q psy16327 225 CEHLEITLDLMNDSRVSPPLMSVEMP 250 (994)
Q Consensus 225 ~~~~~~~l~L~~~~~~~~G~l~v~~~ 250 (994)
....+++|... .|+|.+.+.
T Consensus 94 --~~~~w~~L~~~----~G~~~~~~~ 113 (116)
T cd08376 94 --THSLELELEDG----EGSLLLLLT 113 (116)
T ss_pred --ceEEEEEccCC----CcEEEEEEE
Confidence 23456666642 588877653
No 44
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.43 E-value=7.3e-13 Score=127.54 Aligned_cols=95 Identities=22% Similarity=0.425 Sum_probs=76.3
Q ss_pred CCCCCCeEEEeecc--CCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccC
Q psy16327 147 LLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN 222 (994)
Q Consensus 147 f~~~dPyv~v~~~g--~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~ 222 (994)
+.++||||+|.+.+ ..++||+++++++||+|||+|.|.+.. ...|.|+|||+|++ +|++||.+.++|+++...
T Consensus 18 ~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~iG~~~~~l~~l~~g-- 94 (119)
T cd04036 18 LSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDHLGTVLFDVSKLKLG-- 94 (119)
T ss_pred CCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcccEEEEEEHHHCCCC--
Confidence 46799999999964 457899999999999999999998865 45799999999999 899999999999998543
Q ss_pred CccceEEEEeecCCCCCCCCCeEEEecC
Q psy16327 223 GKCEHLEITLDLMNDSRVSPPLMSVEMP 250 (994)
Q Consensus 223 ~~~~~~~~~l~L~~~~~~~~G~l~v~~~ 250 (994)
.. ...+++|... ..|+|.|.+.
T Consensus 95 -~~--~~~~~~L~~~---~~g~l~~~~~ 116 (119)
T cd04036 95 -EK--VRVTFSLNPQ---GKEELEVEFL 116 (119)
T ss_pred -Cc--EEEEEECCCC---CCceEEEEEE
Confidence 22 3355566532 4788777764
No 45
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.43 E-value=7.6e-13 Score=129.92 Aligned_cols=104 Identities=22% Similarity=0.400 Sum_probs=82.8
Q ss_pred CCCCCCeEEEeeccC------CceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327 147 LLKPNPYIELYVDYK------NPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 147 f~~~dPyv~v~~~g~------~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
+.++||||+|.+++. ..+||+++++|+||.|||+|.|.+.+ ...|.|.|||++.+++|++||.+.|+|.++..
T Consensus 18 ~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~ 97 (133)
T cd04033 18 FGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPT 97 (133)
T ss_pred CCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCC
Confidence 457999999999764 25789999999999999999998876 56899999999999999999999999999986
Q ss_pred ccCC---ccceEEEEeecCCCCCCCCCeEEEecC
Q psy16327 220 HYNG---KCEHLEITLDLMNDSRVSPPLMSVEMP 250 (994)
Q Consensus 220 ~~~~---~~~~~~~~l~L~~~~~~~~G~l~v~~~ 250 (994)
.... .....|+.|.-....+...|+|.|.+.
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~ 131 (133)
T cd04033 98 ETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMA 131 (133)
T ss_pred cCccccccccchheeeeecCCCCcceeEEEEEEe
Confidence 5332 123445555432334457899999875
No 46
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.42 E-value=6.3e-13 Score=129.42 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=78.1
Q ss_pred CCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCC--CeEEEEEecCCCCCCCcccceEEeehhhhhcccCCccc
Q psy16327 149 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPY--SIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCE 226 (994)
Q Consensus 149 ~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~--~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~~ 226 (994)
.+||||+|.+++.+.+||++ ++++||.|||.|.|.+.+. ..|.|.|||++++++|++||.+.|+|.++... ...
T Consensus 21 ~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~---~~~ 96 (126)
T cd08400 21 VPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNG---QET 96 (126)
T ss_pred CCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCC---Ccc
Confidence 57999999998776788987 5689999999999976553 57899999999999999999999999998652 333
Q ss_pred eEEEEeecCCC-CCCCCCeEEEecCC
Q psy16327 227 HLEITLDLMND-SRVSPPLMSVEMPP 251 (994)
Q Consensus 227 ~~~~~l~L~~~-~~~~~G~l~v~~~~ 251 (994)
..|+.|.-... .....|+|.|.+++
T Consensus 97 ~~W~~L~~~~~~~~~~~G~i~l~l~~ 122 (126)
T cd08400 97 DEWYPLSSASPLKGGEWGSLRIRARY 122 (126)
T ss_pred cEeEEcccCCCCCCCcCcEEEEEEEE
Confidence 44555543332 23567999998865
No 47
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.41 E-value=5.9e-13 Score=126.60 Aligned_cols=84 Identities=26% Similarity=0.265 Sum_probs=71.7
Q ss_pred CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC------CCeEEEEEecCCCCCCCcccceEEeehhhhhccc
Q psy16327 148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP------YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHY 221 (994)
Q Consensus 148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~------~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~ 221 (994)
..+||||+|+++++ ++||+++++++||.|||+|.|.+.. ...|.|+|||++++++|++||++.|+|+++....
T Consensus 19 ~~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~ 97 (111)
T cd04011 19 GNIDPVVKVEVGGQ-KKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQP 97 (111)
T ss_pred CCCCCEEEEEECCE-eeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCC
Confidence 46899999999765 8899999999999999999997642 3589999999999999999999999999998776
Q ss_pred CCccceEEEEe
Q psy16327 222 NGKCEHLEITL 232 (994)
Q Consensus 222 ~~~~~~~~~~l 232 (994)
.+.....|+.|
T Consensus 98 ~~~~~~~w~~L 108 (111)
T cd04011 98 DHAFLRKWLLL 108 (111)
T ss_pred CCcceEEEEEe
Confidence 65555555543
No 48
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.41 E-value=7.5e-13 Score=128.53 Aligned_cols=101 Identities=19% Similarity=0.236 Sum_probs=82.6
Q ss_pred CCCCCCeEEEeeccCCceeeeeec-CCCCCCcceEEEEEecCC------CeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVK-NTYQPKWNEEFTVLVSPY------SIILFRLLDHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k-~tlnP~Wne~f~~~v~~~------~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
+.++||||+|.+++.+++||++++ +++||.|||.|.|.+.+. ..|.|+|||++++++|++||++.|+|.+++.
T Consensus 18 ~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~ 97 (125)
T cd04051 18 FGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLD 97 (125)
T ss_pred ccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhc
Confidence 578999999999875689999875 689999999999988654 6999999999999999999999999999998
Q ss_pred ccCCccceEEEEeecCCCCCCCCCeEEE
Q psy16327 220 HYNGKCEHLEITLDLMNDSRVSPPLMSV 247 (994)
Q Consensus 220 ~~~~~~~~~~~~l~L~~~~~~~~G~l~v 247 (994)
......+....+..|.+.++...|+|.+
T Consensus 98 ~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 98 GASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred ccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 7654312223556777777777887753
No 49
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.41 E-value=7.9e-13 Score=132.49 Aligned_cols=103 Identities=12% Similarity=0.157 Sum_probs=80.7
Q ss_pred CCCCCCeEEEeeccCCceeeeeecC-CCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhccc-C
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKN-TYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHY-N 222 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~-tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~-~ 222 (994)
+.++||||+|.+++ +..||+++++ |+||+|||.|.|.+.+ .+.|.|.|||++.+++|++||.+.|+|.++.... .
T Consensus 18 ~g~sDPYV~v~l~~-~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~ 96 (150)
T cd04019 18 NRVPEVFVKAQLGN-QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDD 96 (150)
T ss_pred CCCCCeEEEEEECC-EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCC
Confidence 46899999999976 5889998876 6999999999998864 4699999999999999999999999999986532 2
Q ss_pred CccceEEEEeecCCCCC--------CCCCeEEEecCCc
Q psy16327 223 GKCEHLEITLDLMNDSR--------VSPPLMSVEMPPL 252 (994)
Q Consensus 223 ~~~~~~~~~l~L~~~~~--------~~~G~l~v~~~~~ 252 (994)
+.....|+. |.+.++ ...|+|.|.++..
T Consensus 97 ~~~~~~W~~--L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 97 RPVPSRWFS--LERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred CccCCceEE--CcCCCCcccccccCcccccEEEEEEec
Confidence 233454554 443321 3568988888653
No 50
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.41 E-value=6.2e-13 Score=127.74 Aligned_cols=97 Identities=19% Similarity=0.229 Sum_probs=76.3
Q ss_pred CCCCCCCeEEEeeccCCceeeeeec-CCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccC
Q psy16327 146 GLLKPNPYIELYVDYKNPKTTRVVK-NTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN 222 (994)
Q Consensus 146 ~f~~~dPyv~v~~~g~~~~kT~v~k-~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~ 222 (994)
.+.++||||+|.+++ +++||++++ +++||.|||.|.|.+.. ...|.|+|||++..+ |++||++.|+|++++....
T Consensus 18 ~~~~~dpyv~v~~~~-~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~iG~~~~~l~~~~~~~~ 95 (118)
T cd08681 18 KLDKQDPYCVLRIGG-VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDLIGDTEVDLSPALKEGE 95 (118)
T ss_pred cCCCCCceEEEEECC-CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-CcceEEEEEecHHHhhcCC
Confidence 357899999999976 488898875 58999999999998875 568999999999876 8999999999999876422
Q ss_pred CccceEEEEeecCCCCCCCCCeEEEecC
Q psy16327 223 GKCEHLEITLDLMNDSRVSPPLMSVEMP 250 (994)
Q Consensus 223 ~~~~~~~~~l~L~~~~~~~~G~l~v~~~ 250 (994)
...|+ +|.+. +...|+|.|.++
T Consensus 96 ---~~~w~--~L~~~-~~~~G~i~l~l~ 117 (118)
T cd08681 96 ---FDDWY--ELTLK-GRYAGEVYLELT 117 (118)
T ss_pred ---CCCcE--EeccC-CcEeeEEEEEEE
Confidence 23334 44432 346799998774
No 51
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.41 E-value=5.3e-13 Score=126.28 Aligned_cols=73 Identities=21% Similarity=0.326 Sum_probs=64.8
Q ss_pred CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC---CCeEEEEEecCCCCCCCcccceEEeehhhhhccc
Q psy16327 148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP---YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHY 221 (994)
Q Consensus 148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~---~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~ 221 (994)
..+||||+|.++ .+.+||+++++++||+|||.|.|.+.+ ...|.|.|||+|++++|++||.+.|+|++|+...
T Consensus 24 ~~~DPYv~v~~~-~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 24 FDMDPFVIISFG-RRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CccCceEEEEEC-CEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 358999999995 458899999999999999999998753 2489999999999999999999999999998764
No 52
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.41 E-value=3.8e-13 Score=133.84 Aligned_cols=74 Identities=27% Similarity=0.537 Sum_probs=67.0
Q ss_pred CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccC
Q psy16327 148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN 222 (994)
Q Consensus 148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~ 222 (994)
..+||||+|.+++ +++||+++++++||+|||+|.|.+.. ...|.|+|||+|++++|++||.+.++|.+++...+
T Consensus 20 ~~sDPYV~v~~g~-~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~ 94 (145)
T cd04038 20 TSSDPYVVLTLGN-QKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAK 94 (145)
T ss_pred CCcCcEEEEEECC-EEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhh
Confidence 5789999999954 58999999999999999999998765 56899999999999999999999999999987644
No 53
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.40 E-value=2.6e-13 Score=128.97 Aligned_cols=70 Identities=24% Similarity=0.331 Sum_probs=62.0
Q ss_pred CCCCCeEEEeecc---CCceeeeeecCCCCCCcceEEEEEecCC----CeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327 148 LKPNPYIELYVDY---KNPKTTRVVKNTYQPKWNEEFTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIYGV 217 (994)
Q Consensus 148 ~~~dPyv~v~~~g---~~~~kT~v~k~tlnP~Wne~f~~~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~~~ 217 (994)
..+||||+|.+.. ..++||+|++||+||+|||+|.|.|... ..|.|.|||+|+|+++++||++.++++++
T Consensus 30 g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~ 106 (118)
T cd08677 30 AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADV 106 (118)
T ss_pred CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccc
Confidence 3489999999942 2478899999999999999999988753 47999999999999999999999999886
No 54
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.39 E-value=1.4e-12 Score=125.40 Aligned_cols=97 Identities=16% Similarity=0.205 Sum_probs=79.9
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCcc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKC 225 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~ 225 (994)
+..+||||+|.+++. ..||+++++++||.|||+|.|.+.. ...|.|.|||++.+.++++||.+.++|.++...
T Consensus 19 ~~~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~----- 92 (119)
T cd08377 19 GGKSDPFCVLELVNA-RLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNG----- 92 (119)
T ss_pred CCCCCcEEEEEECCE-eeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCC-----
Confidence 456899999999655 6899999999999999999998876 679999999999999999999999999998533
Q ss_pred ceEEEEeecCCCCCCCCCeEEEec
Q psy16327 226 EHLEITLDLMNDSRVSPPLMSVEM 249 (994)
Q Consensus 226 ~~~~~~l~L~~~~~~~~G~l~v~~ 249 (994)
...|+.|..........|+|.|.+
T Consensus 93 ~~~~~~l~~~~~~~~~~G~i~l~~ 116 (119)
T cd08377 93 ERKWYALKDKKLRTRAKGSILLEM 116 (119)
T ss_pred CceEEECcccCCCCceeeEEEEEE
Confidence 234565554444445789988876
No 55
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.38 E-value=1.9e-12 Score=126.00 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=78.0
Q ss_pred CCCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec-CCCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327 146 GLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK 224 (994)
Q Consensus 146 ~f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~-~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~ 224 (994)
.+.++||||+|.++++ .+||+++++++||+|||.|.|.+. +...|.|.|||+++++ |++||.+.+++.++..
T Consensus 20 ~~g~~dPyv~v~~~~~-~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~-d~~lG~~~~~l~~~~~----- 92 (126)
T cd04046 20 SGGGADPYVIIKCEGE-SVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLC-DEFLGQATLSADPNDS----- 92 (126)
T ss_pred CCCCcCccEEEEECCE-EEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCC-CCceEEEEEecccCCC-----
Confidence 3567999999999765 889999999999999999999664 4568999999999875 8899999999987522
Q ss_pred cceEEEEee--cCCCCCCCCCeEEEecCC
Q psy16327 225 CEHLEITLD--LMNDSRVSPPLMSVEMPP 251 (994)
Q Consensus 225 ~~~~~~~l~--L~~~~~~~~G~l~v~~~~ 251 (994)
....++.|. +.+.++.+.|+|.|.++.
T Consensus 93 ~~~~~~~l~~~~~~~~~~~~G~i~~~~~~ 121 (126)
T cd04046 93 QTLRTLPLRKRGRDAAGEVPGTISVKVTS 121 (126)
T ss_pred cCceEEEcccCCCCCCCCCCCEEEEEEEE
Confidence 223344443 223556789999998753
No 56
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.38 E-value=1.3e-12 Score=124.20 Aligned_cols=73 Identities=25% Similarity=0.475 Sum_probs=64.8
Q ss_pred CCCCCeEEEeec--cCCceeeeeecCCCCCCcceEEEEEecC-----CCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327 148 LKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVLVSP-----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 148 ~~~dPyv~v~~~--g~~~~kT~v~k~tlnP~Wne~f~~~v~~-----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~ 220 (994)
.++||||+|.+. |+..+||+++++|+||+|||.|.|.+.+ ...|.|+|||+|++++|++||++.|+|++++..
T Consensus 21 ~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 21 GSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIED 100 (111)
T ss_pred CCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhcC
Confidence 578999999984 3457899999999999999999997764 368999999999999999999999999999743
No 57
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.37 E-value=3e-12 Score=122.32 Aligned_cols=96 Identities=22% Similarity=0.364 Sum_probs=81.7
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK 224 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~ 224 (994)
+.++||||+|.++|...++|+++++++||.|||+|.+.+.. ...|.|.|||++.++++++||++.++|.++...
T Consensus 17 ~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~---- 92 (115)
T cd04040 17 NGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPE---- 92 (115)
T ss_pred CCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCC----
Confidence 45789999999988778999999999999999999998764 478999999999999999999999999998653
Q ss_pred cceEEEEeecCCCCCCCCCeEEE
Q psy16327 225 CEHLEITLDLMNDSRVSPPLMSV 247 (994)
Q Consensus 225 ~~~~~~~l~L~~~~~~~~G~l~v 247 (994)
.....+++|...++...|.|.+
T Consensus 93 -~~~~~~~~L~~~g~~~~~~~~~ 114 (115)
T cd04040 93 -ETTELTLPLDGQGGGKLGAVFL 114 (115)
T ss_pred -CcEEEEEECcCCCCccCceEEc
Confidence 2245777888777777787654
No 58
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.37 E-value=2e-12 Score=125.12 Aligned_cols=99 Identities=21% Similarity=0.358 Sum_probs=80.5
Q ss_pred CCCCCeEEEeecc-CCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCcc
Q psy16327 148 LKPNPYIELYVDY-KNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKC 225 (994)
Q Consensus 148 ~~~dPyv~v~~~g-~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~ 225 (994)
..+||||+|.+++ ...+||+++++++||.|||.|.|.+.+ ...|.|+|||++.+++|++||.+.++|.++......
T Consensus 22 ~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~-- 99 (124)
T cd04044 22 GTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQ-- 99 (124)
T ss_pred CCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccc--
Confidence 3589999999988 578999999999999999999998875 679999999999999999999999999999875332
Q ss_pred ceEEEEeecCCCCCCCCCeEEEecCC
Q psy16327 226 EHLEITLDLMNDSRVSPPLMSVEMPP 251 (994)
Q Consensus 226 ~~~~~~l~L~~~~~~~~G~l~v~~~~ 251 (994)
.. ....|. .++...|+|.|.+..
T Consensus 100 ~~--~~~~~~-~~~k~~G~i~~~l~~ 122 (124)
T cd04044 100 EN--LTKNLL-RNGKPVGELNYDLRF 122 (124)
T ss_pred cC--cchhhh-cCCccceEEEEEEEe
Confidence 11 222333 344567999998754
No 59
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.37 E-value=1.4e-12 Score=130.04 Aligned_cols=87 Identities=22% Similarity=0.245 Sum_probs=69.9
Q ss_pred CCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEec-----------------CCCeEEEEEecCCCCCCCcc
Q psy16327 148 LKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVS-----------------PYSIILFRLLDHRTFRRDCT 206 (994)
Q Consensus 148 ~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~-----------------~~~~l~~~V~D~d~~~~d~~ 206 (994)
..+||||+|.+.+. +++||+++++|+||+|||+|.|.+. ....|.|.|||++.+++|+|
T Consensus 17 g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddf 96 (148)
T cd04010 17 GTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVF 96 (148)
T ss_pred CCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCce
Confidence 46899999999762 5789999999999999999999884 12479999999999999999
Q ss_pred cceEEeehhhhhcccCCccceEEEEeecCC
Q psy16327 207 IGEKRLNIYGVLAHYNGKCEHLEITLDLMN 236 (994)
Q Consensus 207 lG~~~i~l~~~~~~~~~~~~~~~~~l~L~~ 236 (994)
||++.|+|.++.... .....|+.|..++
T Consensus 97 LG~v~i~l~~l~~~~--~~~~~W~~L~~~~ 124 (148)
T cd04010 97 LGEVRIPLRGLDLQA--GSHQAWYFLQPRE 124 (148)
T ss_pred eEEEEEecccccccC--CcCcceeecCCcc
Confidence 999999999986541 1234566555443
No 60
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.37 E-value=1.7e-12 Score=125.65 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=77.5
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK 224 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~ 224 (994)
...+||||+|.+++. .+||+++++++||.|||+|.|.+.. ...|.|.|||++.++++++||.+.++|.++.....
T Consensus 18 ~~~~DPyv~v~~~~~-~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~-- 94 (123)
T cd04025 18 NGTSDPFVRVFYNGQ-TLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQ-- 94 (123)
T ss_pred CCCcCceEEEEECCE-EEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCC--
Confidence 346899999999654 7899999999999999999998865 46899999999999999999999999999865321
Q ss_pred cceEEEEeecCCC----CCCCCCeEEEec
Q psy16327 225 CEHLEITLDLMND----SRVSPPLMSVEM 249 (994)
Q Consensus 225 ~~~~~~~l~L~~~----~~~~~G~l~v~~ 249 (994)
...|+.|..... ++...|.|.|.+
T Consensus 95 -~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 95 -EEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred -CCCEEECCCCCCCCccccCceEEEEEEe
Confidence 234554443321 223567888765
No 61
>KOG3209|consensus
Probab=99.37 E-value=1.1e-12 Score=150.65 Aligned_cols=164 Identities=27% Similarity=0.433 Sum_probs=115.0
Q ss_pred CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChhhhhccccccccccccc--ccCCccccCCCCCCCcCCCCcc----
Q psy16327 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVV--SQGSQRFLYPQHGVGVSSSSAV---- 581 (994)
Q Consensus 508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~~~~~~~~~~~~r~~~~--~q~~~r~~~~~~~~~~~~~~~~---- 581 (994)
...||++|++...++++.|+..|++..++|+.++.... .|....-+.. ++.. ..++....-.+ +.++
T Consensus 130 ~~~~~~~~~es~~kr~~sy~~m~n~g~~~~eeeee~d~----g~~n~~~~~~~~E~~e--~s~~~s~~m~s-sy~aPsts 202 (984)
T KOG3209|consen 130 ELLLPPNSAESYRKRTKSYSIMENAGITTPEEEEEEDP----GWENGSGQNYSVEMEE--SSYPTSSDMPS-SYFAPSTS 202 (984)
T ss_pred cccCCCcchhcccccCcceeehhccCCCCcccccccCc----cccccCCcccchhhhh--ccCCccCCCcc-cccccccC
Confidence 34789999999999999999999999999999876421 1211111110 0000 00111000000 0110
Q ss_pred ----ccCCCc-ccccccCCCCCCCceEEEcCCCceEEEecCCcccccCCCCcccccccccCCCCCCCCCCcceeeccCcc
Q psy16327 582 ----SFSTGV-TEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGT 656 (994)
Q Consensus 582 ----~~~~~~-~~~~~~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~~~~~~~~~~~~~LP~gWe~~~~~~g~ 656 (994)
...... ....+.++|||..||+.++++|.+||++|+|++|.|-|||.....+....+.+.+||+||+.--+.-..
T Consensus 203 ~s~~~~~~~~~~~~e~~~gplp~nwemayte~gevyfiDhntkttswLdprl~kkaK~~eeckd~elPygWeki~dpiYg 282 (984)
T KOG3209|consen 203 QSTTPMDRYSPATQEDNLGPLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRLTKKAKPPEECKDQELPYGWEKIEDPIYG 282 (984)
T ss_pred CCCCcccccCccccccccCCCCccceEeEeecCeeEeeecccccceecChhhhcccCChhhcccccccccccccCCccce
Confidence 000000 123456789999999999999999999999999999999976666666666788999999999888788
Q ss_pred eeeeccCCCccccCCCCCCCCC
Q psy16327 657 RYFVDHNTRSTTFEDPRPGVPK 678 (994)
Q Consensus 657 ~yfv~hn~r~tt~~dPr~~~~~ 678 (994)
.|||+|+++.++|+.|.+...+
T Consensus 283 ~yyvdHiN~~sq~enpvleakr 304 (984)
T KOG3209|consen 283 TYYVDHINRKSQYENPVLEAKR 304 (984)
T ss_pred eEEecccchhhhhccchhhccc
Confidence 9999999999999999875544
No 62
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.36 E-value=1.8e-12 Score=123.10 Aligned_cols=84 Identities=20% Similarity=0.275 Sum_probs=70.5
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCc-ceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhccc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKW-NEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHY 221 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~W-ne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~ 221 (994)
...+||||+|.+++ +++||+++++++||.| ||.|.|.+.. ...|.|+|||+|.+++|++||++.++|.++....
T Consensus 18 ~~~~Dpyv~v~~~~-~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~ 96 (110)
T cd08688 18 SDLTDAFVEVKFGS-TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKD 96 (110)
T ss_pred CCCCCceEEEEECC-eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccC
Confidence 45689999999966 6999999999999999 9999998865 3689999999999999999999999999998753
Q ss_pred CCccceEEEE
Q psy16327 222 NGKCEHLEIT 231 (994)
Q Consensus 222 ~~~~~~~~~~ 231 (994)
.......|+.
T Consensus 97 ~~~~~~~w~~ 106 (110)
T cd08688 97 SVSQISGWFP 106 (110)
T ss_pred CccccCCeEE
Confidence 2333344443
No 63
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.36 E-value=2.7e-12 Score=128.37 Aligned_cols=73 Identities=25% Similarity=0.388 Sum_probs=65.1
Q ss_pred CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec-C--CCeEEEEEecCCCCCCCcccceEEeehhhhhccc
Q psy16327 148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-P--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHY 221 (994)
Q Consensus 148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~-~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~ 221 (994)
..+||||+|.++|+ +.||+++++++||+|||+|.|.+. + ...|.|+|||+|.+++|++||.+.|+|+++....
T Consensus 33 ~~~DPYV~V~~~g~-~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 33 ELVDPYVEVSFAGQ-KVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred CCcCcEEEEEECCE-eeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 46899999999876 779999999999999999999763 2 4599999999999999999999999999997753
No 64
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.35 E-value=1.6e-12 Score=125.92 Aligned_cols=72 Identities=18% Similarity=0.317 Sum_probs=63.5
Q ss_pred CCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEec-----CCCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327 148 LKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVL 218 (994)
Q Consensus 148 ~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~-----~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~ 218 (994)
..+||||+|.+.+ ..++||+++++++||+|||+|.|.+. ....|.|.|||+|.++++++||++.|+|+++.
T Consensus 31 ~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~ 110 (122)
T cd08381 31 SDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLD 110 (122)
T ss_pred CCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccc
Confidence 4689999999953 34789999999999999999999762 35699999999999999999999999999986
Q ss_pred c
Q psy16327 219 A 219 (994)
Q Consensus 219 ~ 219 (994)
.
T Consensus 111 ~ 111 (122)
T cd08381 111 L 111 (122)
T ss_pred c
Confidence 4
No 65
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.35 E-value=4.6e-12 Score=123.51 Aligned_cols=97 Identities=18% Similarity=0.300 Sum_probs=77.4
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec-CCCeEEEEEecCCCC-----------CCCcccceEEeeh
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTF-----------RRDCTIGEKRLNI 214 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~-~~~~l~~~V~D~d~~-----------~~d~~lG~~~i~l 214 (994)
+.++||||+|.+++ +.+||+++++++||.|||.|.|.+. +...|.|.|||+|.. .+|++||.+.|+|
T Consensus 19 ~g~~DPyv~v~~~~-~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l 97 (127)
T cd04027 19 TGTSDPYVTVQVGK-TKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEV 97 (127)
T ss_pred CCCcCcEEEEEECC-EeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEh
Confidence 56789999999954 5889999999999999999999775 457999999999853 4689999999999
Q ss_pred hhhhcccCCccceEEEEeecCCCCCCCCCeEEEec
Q psy16327 215 YGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEM 249 (994)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~L~~~~~~~~G~l~v~~ 249 (994)
.++... ..+|+.|.....+..+.|+|.+.+
T Consensus 98 ~~~~~~-----~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 98 RTLSGE-----MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred HHccCC-----CCeEEECccCCCCCcEeEEEEEEC
Confidence 986322 345666655444446799998864
No 66
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.34 E-value=4e-12 Score=122.43 Aligned_cols=92 Identities=21% Similarity=0.320 Sum_probs=75.4
Q ss_pred CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCcc
Q psy16327 148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKC 225 (994)
Q Consensus 148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~ 225 (994)
..+||||+|.+++ +.+||+++++++||.|||.|.+.+.+ ...|.|.|||++.+ +|++||.+.|+|.++... ..
T Consensus 26 g~~dPyv~v~~~~-~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~~~---~~ 100 (121)
T cd08391 26 GKSDPYVIVRVGA-QTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKK---GF 100 (121)
T ss_pred CCcCCEEEEEECC-EeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC-CCCcEEEEEEEHHHhccc---Cc
Confidence 3689999999976 58999999999999999999998875 67999999999998 889999999999999753 22
Q ss_pred ceEEEEeecCCCCCCCCCeEEEec
Q psy16327 226 EHLEITLDLMNDSRVSPPLMSVEM 249 (994)
Q Consensus 226 ~~~~~~l~L~~~~~~~~G~l~v~~ 249 (994)
.. .+++|+.. ..|+|.|.+
T Consensus 101 ~~--~w~~L~~~---~~G~~~~~~ 119 (121)
T cd08391 101 ID--EWLPLEDV---KSGRLHLKL 119 (121)
T ss_pred cc--eEEECcCC---CCceEEEEE
Confidence 33 44455432 568887765
No 67
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.34 E-value=5.9e-12 Score=127.39 Aligned_cols=99 Identities=20% Similarity=0.338 Sum_probs=78.1
Q ss_pred CCCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327 146 GLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK 224 (994)
Q Consensus 146 ~f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~ 224 (994)
...++||||+|.+++.+..||+++++++||+|||.|.|.+.. .+.|.|.|||+|.++ +++||.+.|+|+++... .
T Consensus 54 ~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g---~ 129 (158)
T cd04015 54 GKITSDPYATVDLAGARVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSG---E 129 (158)
T ss_pred CCCCcCeEEEEEECCeEeeEEEEeCCCCCCccceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCC---C
Confidence 457789999999987766899999999999999999997654 468999999999885 57999999999999752 2
Q ss_pred cceEEEEeecCCCCC---CCCCeEEEecC
Q psy16327 225 CEHLEITLDLMNDSR---VSPPLMSVEMP 250 (994)
Q Consensus 225 ~~~~~~~l~L~~~~~---~~~G~l~v~~~ 250 (994)
... .+++|.+.+. ...|+|.|.+.
T Consensus 130 ~~~--~w~~L~~~~~~~~~~~~~l~v~~~ 156 (158)
T cd04015 130 PVE--GWLPILDSNGKPPKPGAKIRVSLQ 156 (158)
T ss_pred Ccc--eEEECcCCCCCCCCCCCEEEEEEE
Confidence 233 5566665432 23568888764
No 68
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.33 E-value=5.3e-12 Score=125.39 Aligned_cols=71 Identities=18% Similarity=0.362 Sum_probs=62.5
Q ss_pred CCCCCCeEEEeecc--C--CceeeeeecCCCCCCcceEEEEEec-CCCeEEEEEe-cCCCCCCCcccceEEeehhhh
Q psy16327 147 LLKPNPYIELYVDY--K--NPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLL-DHRTFRRDCTIGEKRLNIYGV 217 (994)
Q Consensus 147 f~~~dPyv~v~~~g--~--~~~kT~v~k~tlnP~Wne~f~~~v~-~~~~l~~~V~-D~d~~~~d~~lG~~~i~l~~~ 217 (994)
...+||||++.+.. . .++||+++++|+||+|||+|.|.+. ....|.|.|| |+++++++++||++.|+|+++
T Consensus 48 ~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l 124 (146)
T cd04028 48 KVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDL 124 (146)
T ss_pred CCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccc
Confidence 35689999999943 2 3789999999999999999999886 4459999999 799999999999999999997
No 69
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.33 E-value=5.4e-12 Score=124.39 Aligned_cols=101 Identities=12% Similarity=0.146 Sum_probs=76.5
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec-----------CCCeEEEEEecCCCCCCCcccceEEe-eh
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-----------PYSIILFRLLDHRTFRRDCTIGEKRL-NI 214 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~-----------~~~~l~~~V~D~d~~~~d~~lG~~~i-~l 214 (994)
+..+||||+|.+++ +++||+++++|+||.|||.|.|.+. ....|.|+|||+|++++|++||++.+ ++
T Consensus 19 ~g~~dpyv~v~~~~-~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~ 97 (135)
T cd04017 19 SGLSDPFARVSFLN-QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPL 97 (135)
T ss_pred CCCCCCEEEEEECC-eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeee
Confidence 56799999999965 4899999999999999999999542 12579999999999999999999987 44
Q ss_pred hhhhcccCCccceEEEEeecCCCCCCCCCeEEEecCC
Q psy16327 215 YGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEMPP 251 (994)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~L~~~~~~~~G~l~v~~~~ 251 (994)
..+.....+.....|+.|. ..+...|+|.|.++.
T Consensus 98 ~~~~~~~~~~~~~~W~~L~---~~~~~~Geil~~~~~ 131 (135)
T cd04017 98 VKLDLEEDFPPKLQWFPIY---KGGQSAGELLAAFEL 131 (135)
T ss_pred eecccCCCCCCCceEEEee---cCCCchhheeEEeEE
Confidence 3333322333455666653 223478999998764
No 70
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.33 E-value=4.6e-12 Score=122.18 Aligned_cols=75 Identities=23% Similarity=0.370 Sum_probs=66.0
Q ss_pred CCCCCCeEEEeeccCC------ceeeeeecCCCCCCcceEEEEEe--cCCCeEEEEEecCCC----CCCCcccceEEeeh
Q psy16327 147 LLKPNPYIELYVDYKN------PKTTRVVKNTYQPKWNEEFTVLV--SPYSIILFRLLDHRT----FRRDCTIGEKRLNI 214 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~------~~kT~v~k~tlnP~Wne~f~~~v--~~~~~l~~~V~D~d~----~~~d~~lG~~~i~l 214 (994)
+.++||||+|.+.+.. .+||+++++++||+|||+|.|.+ .....|.|+|||+|. +++|++||++.++|
T Consensus 18 ~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l 97 (120)
T cd04048 18 LSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTL 97 (120)
T ss_pred CCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEH
Confidence 5789999999997753 48999999999999999999964 345689999999998 88999999999999
Q ss_pred hhhhccc
Q psy16327 215 YGVLAHY 221 (994)
Q Consensus 215 ~~~~~~~ 221 (994)
.+++...
T Consensus 98 ~~l~~~~ 104 (120)
T cd04048 98 GEIVSSP 104 (120)
T ss_pred HHHhcCC
Confidence 9998653
No 71
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.33 E-value=6.4e-12 Score=122.14 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=77.9
Q ss_pred CCCCCCeEEEeeccC--CceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccC
Q psy16327 147 LLKPNPYIELYVDYK--NPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN 222 (994)
Q Consensus 147 f~~~dPyv~v~~~g~--~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~ 222 (994)
+.++||||+|.+++. ..+||+++++++||.|||+|.|.+.. ...|.|.|||++.++++++||++.|+|+++....+
T Consensus 19 ~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~ 98 (126)
T cd04043 19 NGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDD 98 (126)
T ss_pred CCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCC
Confidence 457899999998643 46799999999999999999998876 57999999999999999999999999998865443
Q ss_pred CccceEEEEeecCCCCCCCCCeEEEecCC
Q psy16327 223 GKCEHLEITLDLMNDSRVSPPLMSVEMPP 251 (994)
Q Consensus 223 ~~~~~~~~~l~L~~~~~~~~G~l~v~~~~ 251 (994)
+.....|+ +|.. .|+|.|.+..
T Consensus 99 ~~~~~~w~--~l~~-----~g~i~l~~~~ 120 (126)
T cd04043 99 GLPREIWL--DLDT-----QGRLLLRVSM 120 (126)
T ss_pred CCCceEEE--EcCC-----CCeEEEEEEE
Confidence 44445444 4442 5777776643
No 72
>KOG0940|consensus
Probab=99.32 E-value=1e-12 Score=147.29 Aligned_cols=116 Identities=38% Similarity=0.564 Sum_probs=106.2
Q ss_pred ccccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcccc
Q psy16327 4 TDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWL 83 (994)
Q Consensus 4 ~~~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L 83 (994)
....++....++| +|+|.++.|+.+|++ +||.++++ ++..++.+|..||.+||..++|..++
T Consensus 172 ~~~~~g~~~~~~l-----~p~g~~~~v~~~n~~------------~yi~~l~~-r~~~~~~~q~~~l~~~~~~~~p~~~~ 233 (358)
T KOG0940|consen 172 ESEVLGQITTQEL-----KPNGANIQVTEENKK------------EYIMLLQN-RFERGIQEQLKALLQGFNELLPQSLL 233 (358)
T ss_pred chhhcCCccceee-----cCCCcccccccccHH------------HHHHHHHH-HHHHHHHHHHHHHhccccccCCcccc
Confidence 3455667777888 588999999999999 99999999 89999999999999999999999999
Q ss_pred cCCCHHHHHHHHcCCCccChhhhhhcceeCCccCCCcceeeEEEE--ecCcccccc
Q psy16327 84 KYFDERELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKN--TYQPKWNEE 137 (994)
Q Consensus 84 ~~f~~~EL~~ll~G~~~id~~~l~~~t~y~gy~~~s~~i~~fw~~--f~~~~e~~~ 137 (994)
++|.+.|++.++||..++|+++|+.++.|.+|..++++|.|||+. .|++++++.
T Consensus 234 ~~~~e~~~e~~~~~~~~~~~~d~~~~t~~~~~~~~~~~i~wf~~~v~~~~~~~r~r 289 (358)
T KOG0940|consen 234 RIFDEMELELALSGDPEIDVNDWKQNTEYRGYSETDRQIDWFWNNVDEMDNEERIR 289 (358)
T ss_pred cccchhhHHHHhcCCcccchhHHhhhcccccccCCccccHHHHHhhhhcChHHHHh
Confidence 999999999999999999999999999999999999999999996 566666655
No 73
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.32 E-value=5.7e-12 Score=118.59 Aligned_cols=80 Identities=25% Similarity=0.404 Sum_probs=67.7
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK 224 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~ 224 (994)
...+||||+|+++| +++||+++++|+||+|||.|.|.+.. .+.|.|.|||++. |++||.+.|+|++++... +.
T Consensus 18 ~~~~dpyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG~~~i~l~~l~~~~-~~ 92 (105)
T cd04050 18 TKEPSPYVELTVGK-TTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLGSLTLPLSELLKEP-DL 92 (105)
T ss_pred CCCCCcEEEEEECC-EEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccEEEEEEHHHhhccc-cc
Confidence 46799999999977 59999999999999999999998874 5799999999986 789999999999998764 23
Q ss_pred cceEEEE
Q psy16327 225 CEHLEIT 231 (994)
Q Consensus 225 ~~~~~~~ 231 (994)
....|+.
T Consensus 93 ~~~~w~~ 99 (105)
T cd04050 93 TLDQPFP 99 (105)
T ss_pred eeeeeEe
Confidence 3344443
No 74
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.31 E-value=3.7e-12 Score=123.70 Aligned_cols=71 Identities=20% Similarity=0.328 Sum_probs=63.7
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEe-c--CCCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV-S--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVL 218 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v-~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~ 218 (994)
+.++||||+|.++|+ ++||+++++++||+|||+|.|.. . ....|.|+|||+|.+++|++||.+.++|....
T Consensus 45 ~g~~DPYVkV~~~~~-~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 45 FTSTDGYVKVFFGGQ-EKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCeEEEEEECCc-cccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 567999999999776 99999999999999999999953 3 36799999999999999999999999998664
No 75
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.31 E-value=6.8e-12 Score=122.49 Aligned_cols=85 Identities=25% Similarity=0.374 Sum_probs=67.6
Q ss_pred CCCCCeEEEeec--cCCceeeeeecCCCCCCcceEEEE-EecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327 148 LKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTV-LVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 148 ~~~dPyv~v~~~--g~~~~kT~v~k~tlnP~Wne~f~~-~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~ 220 (994)
..+||||+|.+. ..+++||+++++++||+|||+|.| .+.. ...|.|+|||+|++++|++||++.|+|+++--.
T Consensus 36 ~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~ 115 (128)
T cd08388 36 GTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLL 115 (128)
T ss_pred CCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCC
Confidence 568999999984 344679999999999999999999 4542 347999999999999999999999999988443
Q ss_pred cCCccceEEEEeecC
Q psy16327 221 YNGKCEHLEITLDLM 235 (994)
Q Consensus 221 ~~~~~~~~~~~l~L~ 235 (994)
+.+ .+.++|.|+
T Consensus 116 ~~~---~~~~~~~~~ 127 (128)
T cd08388 116 NEG---ELLVSREIQ 127 (128)
T ss_pred CCc---eEEEEEecc
Confidence 222 244555554
No 76
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.30 E-value=4.5e-12 Score=123.67 Aligned_cols=85 Identities=21% Similarity=0.261 Sum_probs=68.9
Q ss_pred CCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327 148 LKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 148 ~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
..+||||+|.+.. ..++||+++++++||+|||+|.|.+.. ...|.|.|||+++++++++||++.|+|+++--
T Consensus 35 g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~ 114 (128)
T cd08392 35 KKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDF 114 (128)
T ss_pred CCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCccc
Confidence 5689999999842 236799999999999999999998865 45999999999999999999999999999843
Q ss_pred ccCCccceEEEEe
Q psy16327 220 HYNGKCEHLEITL 232 (994)
Q Consensus 220 ~~~~~~~~~~~~l 232 (994)
...+.....|+.|
T Consensus 115 ~~~~~~~~~W~~l 127 (128)
T cd08392 115 EDTDSQRFLWYPL 127 (128)
T ss_pred CCCCccccceEEC
Confidence 3223344455543
No 77
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.30 E-value=5.8e-12 Score=121.04 Aligned_cols=81 Identities=21% Similarity=0.293 Sum_probs=67.1
Q ss_pred CCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec-CCCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCccceEE
Q psy16327 151 NPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCEHLE 229 (994)
Q Consensus 151 dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~-~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~~~~~ 229 (994)
||||+|++++ ++.||++++++ ||.|||+|.|.+. .++.|.|+|||+|.+ +|||||.+.|+|+++....+ .+...|
T Consensus 21 dPYV~Ik~g~-~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG~v~i~L~~v~~~~~-~~~~~W 96 (127)
T cd08394 21 NTYVTLKVQN-VKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVGTVWIPLSTIRQSNE-EGPGEW 96 (127)
T ss_pred CCeEEEEECC-EEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceEEEEEEhHHcccCCC-CCCCcc
Confidence 8999999954 58899999884 9999999999875 456799999999966 89999999999999987643 445667
Q ss_pred EEeecC
Q psy16327 230 ITLDLM 235 (994)
Q Consensus 230 ~~l~L~ 235 (994)
+.|...
T Consensus 97 y~L~~~ 102 (127)
T cd08394 97 LTLDSE 102 (127)
T ss_pred EecChH
Confidence 766643
No 78
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.29 E-value=7.1e-12 Score=118.88 Aligned_cols=70 Identities=24% Similarity=0.373 Sum_probs=60.9
Q ss_pred CCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecC-------CCCCCCcccceEEeehhh
Q psy16327 148 LKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDH-------RTFRRDCTIGEKRLNIYG 216 (994)
Q Consensus 148 ~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~-------d~~~~d~~lG~~~i~l~~ 216 (994)
..+||||+|.+++. .+.||+++++|+||+|||+|+|.+.....|.|.|||+ |.+++|++||.+.|.|..
T Consensus 13 ~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 13 QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEGSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCCCCEEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence 44899999999752 3589999999999999999999998888999999998 678899999988887754
Q ss_pred h
Q psy16327 217 V 217 (994)
Q Consensus 217 ~ 217 (994)
-
T Consensus 93 ~ 93 (118)
T cd08686 93 Q 93 (118)
T ss_pred H
Confidence 3
No 79
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.29 E-value=6.9e-12 Score=121.92 Aligned_cols=74 Identities=20% Similarity=0.343 Sum_probs=64.2
Q ss_pred CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327 147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVL 218 (994)
Q Consensus 147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~ 218 (994)
...+||||+|.+.. ..++||+++++++||+|||+|.|.+.. ...|.|.|||+|.++++++||++.|+|.++.
T Consensus 34 ~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~ 113 (125)
T cd04029 34 KKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWN 113 (125)
T ss_pred CCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCccc
Confidence 35799999999842 336899999999999999999998864 4589999999999999999999999999884
Q ss_pred cc
Q psy16327 219 AH 220 (994)
Q Consensus 219 ~~ 220 (994)
..
T Consensus 114 ~~ 115 (125)
T cd04029 114 FD 115 (125)
T ss_pred cc
Confidence 43
No 80
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.28 E-value=7.7e-12 Score=122.97 Aligned_cols=74 Identities=22% Similarity=0.284 Sum_probs=65.4
Q ss_pred CCCCCCeEEEeecc------CCceeeeeecCCCCCCcceEEEEEecC------CCeEEEEEecCCCCCCCcccceEEeeh
Q psy16327 147 LLKPNPYIELYVDY------KNPKTTRVVKNTYQPKWNEEFTVLVSP------YSIILFRLLDHRTFRRDCTIGEKRLNI 214 (994)
Q Consensus 147 f~~~dPyv~v~~~g------~~~~kT~v~k~tlnP~Wne~f~~~v~~------~~~l~~~V~D~d~~~~d~~lG~~~i~l 214 (994)
+..+||||+|.+.+ ...+||+++++|+||+|||+|.|.+.. ...|.|.|||++++++|++||++.|+|
T Consensus 34 ~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l 113 (133)
T cd04009 34 NGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPL 113 (133)
T ss_pred CCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeH
Confidence 46799999999963 347899999999999999999998754 458999999999999999999999999
Q ss_pred hhhhcc
Q psy16327 215 YGVLAH 220 (994)
Q Consensus 215 ~~~~~~ 220 (994)
+++...
T Consensus 114 ~~l~~~ 119 (133)
T cd04009 114 NDIPGV 119 (133)
T ss_pred HHCCcc
Confidence 999754
No 81
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.27 E-value=8.1e-12 Score=121.16 Aligned_cols=74 Identities=28% Similarity=0.426 Sum_probs=65.5
Q ss_pred CCCCCCeEEEee--ccCCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327 147 LLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 147 f~~~dPyv~v~~--~g~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~ 220 (994)
...+||||+|.+ ++.+.+||+++++++||.|||.|.|.+.. ...|.|.|||++.+++|++||.+.|+|+++...
T Consensus 34 ~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~ 113 (124)
T cd08387 34 SGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLS 113 (124)
T ss_pred CCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCC
Confidence 356899999999 44668999999999999999999998764 358999999999999999999999999999643
No 82
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.26 E-value=1.2e-11 Score=120.32 Aligned_cols=71 Identities=20% Similarity=0.373 Sum_probs=62.7
Q ss_pred CCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327 148 LKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVL 218 (994)
Q Consensus 148 ~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~ 218 (994)
..+||||+|.+.. ..++||+|+++++||+|||+|.|.+.. ...|.|.|||+|+++++++||++.|+|.++-
T Consensus 35 g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~ 113 (125)
T cd08393 35 QRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWD 113 (125)
T ss_pred CCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccc
Confidence 4689999999942 346899999999999999999998863 4699999999999999999999999999983
No 83
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.25 E-value=1.6e-11 Score=119.02 Aligned_cols=73 Identities=29% Similarity=0.435 Sum_probs=63.8
Q ss_pred CCCCCCeEEEeecc--CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327 147 LLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 147 f~~~dPyv~v~~~g--~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
...+||||+|.+.+ ...+||+++++++||+|||.|.|.+.. ...|.|+|||+|++++|++||++.|+|+++..
T Consensus 34 ~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~ 112 (124)
T cd08385 34 GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDL 112 (124)
T ss_pred CCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccC
Confidence 45689999999853 346799999999999999999998764 46899999999999999999999999998844
No 84
>PLN03008 Phospholipase D delta
Probab=99.23 E-value=3.1e-11 Score=145.27 Aligned_cols=100 Identities=20% Similarity=0.437 Sum_probs=82.5
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCcc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKC 225 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~ 225 (994)
+.++||||+|.++++...||+|+++++||+|||+|.|.+.. .+.|.|+|||+|.++. ++||++.|+|.+|+..
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~ga-D~IG~a~IPL~~L~~G----- 147 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGA-QIIGTAKIPVRDIASG----- 147 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCC-ceeEEEEEEHHHcCCC-----
Confidence 57899999999976656799999999999999999998864 6799999999999974 7999999999998664
Q ss_pred ceEEEEeecCCCCCC---CCCeEEEecCCc
Q psy16327 226 EHLEITLDLMNDSRV---SPPLMSVEMPPL 252 (994)
Q Consensus 226 ~~~~~~l~L~~~~~~---~~G~l~v~~~~~ 252 (994)
+.+..+++|.+.++. ..|+|.|.|...
T Consensus 148 e~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~ 177 (868)
T PLN03008 148 ERISGWFPVLGASGKPPKAETAIFIDMKFT 177 (868)
T ss_pred CceEEEEEccccCCCCCCCCcEEEEEEEEE
Confidence 234577788876652 356898887654
No 85
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.23 E-value=3.1e-11 Score=117.16 Aligned_cols=73 Identities=29% Similarity=0.528 Sum_probs=63.4
Q ss_pred CCCCCCeEEEee--ccCCceeeeeecCCCCCCcceEEEEEecC-----CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327 147 LLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSP-----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 147 f~~~dPyv~v~~--~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
+.++||||+|.+ ++.+++||+++++++||.|||+|.|.+.+ ...|.|+|||+|+++++++||++.|+|+++..
T Consensus 34 ~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~ 113 (125)
T cd08386 34 SGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDL 113 (125)
T ss_pred CCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccC
Confidence 456899999998 44567899999999999999999996432 35799999999999999999999999999853
No 86
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.22 E-value=2.4e-11 Score=117.78 Aligned_cols=71 Identities=23% Similarity=0.351 Sum_probs=62.4
Q ss_pred CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecC-----CCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327 147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP-----YSIILFRLLDHRTFRRDCTIGEKRLNIYGV 217 (994)
Q Consensus 147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~-----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~ 217 (994)
+..+||||+|.+.+ ..++||+++++++||+|||+|.|.+.. ...|.|.|||++++++|++||.+.|+|++.
T Consensus 34 ~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~ 113 (125)
T cd04031 34 GSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADA 113 (125)
T ss_pred CCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEecccc
Confidence 46799999999964 357899999999999999999997532 468999999999999999999999999983
No 87
>KOG0696|consensus
Probab=99.22 E-value=7.2e-12 Score=137.36 Aligned_cols=75 Identities=23% Similarity=0.387 Sum_probs=67.6
Q ss_pred CCCCCeEEEee----ccCCceeeeeecCCCCCCcceEEEEEecCCC---eEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327 148 LKPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS---IILFRLLDHRTFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 148 ~~~dPyv~v~~----~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~---~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~ 220 (994)
..+||||++++ .++.++||++|+.+|||+|||+|++.+.++. .|.|+|||||+...+||||..++.|++|.+.
T Consensus 199 GlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K~ 278 (683)
T KOG0696|consen 199 GLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQKA 278 (683)
T ss_pred CCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccccccccceecccHHHHhhc
Confidence 46899999998 2466899999999999999999999998864 8999999999999999999999999999886
Q ss_pred cC
Q psy16327 221 YN 222 (994)
Q Consensus 221 ~~ 222 (994)
..
T Consensus 279 p~ 280 (683)
T KOG0696|consen 279 PV 280 (683)
T ss_pred ch
Confidence 43
No 88
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.22 E-value=2.3e-11 Score=117.35 Aligned_cols=74 Identities=23% Similarity=0.423 Sum_probs=67.6
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~ 220 (994)
+..+||||+|.+++...++|+++++++||.|||.|.|.+.. ...|.|.|||++.+++|++||++.++|.++++.
T Consensus 19 ~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~ 93 (120)
T cd04045 19 VGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK 93 (120)
T ss_pred CCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC
Confidence 56899999999987668999999999999999999997754 579999999999999999999999999999876
No 89
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.20 E-value=2.6e-11 Score=115.03 Aligned_cols=73 Identities=25% Similarity=0.386 Sum_probs=63.0
Q ss_pred CCCCCCeEEEeeccCC-----ceeeeeecCCCCCCcceEEEEEecC------CCeEEEEEecCCCCCCCcccceEEeehh
Q psy16327 147 LLKPNPYIELYVDYKN-----PKTTRVVKNTYQPKWNEEFTVLVSP------YSIILFRLLDHRTFRRDCTIGEKRLNIY 215 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~-----~~kT~v~k~tlnP~Wne~f~~~v~~------~~~l~~~V~D~d~~~~d~~lG~~~i~l~ 215 (994)
+.++||||+|.+.+.. .+||+++++++||+|| +|.|.+.. ...|.|+|||++.+++|++||.+.++|.
T Consensus 18 ~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~ 96 (110)
T cd04047 18 FGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLD 96 (110)
T ss_pred CCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHH
Confidence 5679999999986642 5899999999999999 78886431 5699999999999999999999999999
Q ss_pred hhhcc
Q psy16327 216 GVLAH 220 (994)
Q Consensus 216 ~~~~~ 220 (994)
+++..
T Consensus 97 ~l~~~ 101 (110)
T cd04047 97 ELLKS 101 (110)
T ss_pred HHhcC
Confidence 99843
No 90
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.19 E-value=4.2e-11 Score=116.30 Aligned_cols=73 Identities=21% Similarity=0.337 Sum_probs=63.8
Q ss_pred CCCCCCeEEEeeccCC-ceeeeeecCCCCCCcceEEEEEec--CCCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327 147 LLKPNPYIELYVDYKN-PKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~-~~kT~v~k~tlnP~Wne~f~~~v~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
+.++||||+|.+++.. ..||+++++++||+|||+|.|.+. ....|.|+|||+|.+++|++||.+.|+|.+..-
T Consensus 18 ~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 18 NGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeeccccc
Confidence 5689999999997653 368899999999999999999764 356899999999999999999999999998864
No 91
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.19 E-value=5.5e-11 Score=113.83 Aligned_cols=97 Identities=22% Similarity=0.294 Sum_probs=72.0
Q ss_pred CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCC----CeEEEEEecCCCCCCCcccceEEeehhhhhcccCC
Q psy16327 148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNG 223 (994)
Q Consensus 148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~ 223 (994)
..+||||+|.++++..+||+++++ +||.|||+|.|.+... ..|.|.|||++.+.++.++|.+.|...+. +
T Consensus 16 ~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~~~~~-----~ 89 (117)
T cd08383 16 GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALSKLDL-----G 89 (117)
T ss_pred CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEEecCcCC-----C
Confidence 468999999998876789999999 9999999999988762 47888899998877777777765544332 2
Q ss_pred ccceEEEEeecCCCCCCCCCeEEEecC
Q psy16327 224 KCEHLEITLDLMNDSRVSPPLMSVEMP 250 (994)
Q Consensus 224 ~~~~~~~~l~L~~~~~~~~G~l~v~~~ 250 (994)
.....|+.|..........|+|.|.+.
T Consensus 90 ~~~~~w~~L~~~~~~~~~~G~l~l~~~ 116 (117)
T cd08383 90 QGKDEWFPLTPVDPDSEVQGSVRLRAR 116 (117)
T ss_pred CcceeEEECccCCCCCCcCceEEEEEE
Confidence 333445555444444567899988763
No 92
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.19 E-value=5.5e-11 Score=115.00 Aligned_cols=74 Identities=20% Similarity=0.406 Sum_probs=65.1
Q ss_pred CCCCCCeEEEee--ccCCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327 147 LLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 147 f~~~dPyv~v~~--~g~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~ 220 (994)
+..+||||+|.+ ++.+.+||+++++++||.|||.|.|.+.. ...|.|.|||++.++++++||++.|+|+++...
T Consensus 33 ~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~ 112 (123)
T cd08390 33 VAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLV 112 (123)
T ss_pred CCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecC
Confidence 456899999998 34557899999999999999999998864 358999999999999999999999999998654
No 93
>KOG1891|consensus
Probab=99.19 E-value=3.7e-11 Score=121.26 Aligned_cols=74 Identities=38% Similarity=0.873 Sum_probs=67.3
Q ss_pred CCCCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChhhhhcccccccccccccccCCccccCCCCCCCcCCCCccccCC
Q psy16327 506 ERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFST 585 (994)
Q Consensus 506 ~~~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~~~~~~~~~~~~r~~~~~q~~~r~~~~~~~~~~~~~~~~~~~~ 585 (994)
..+.|||+||...++-.||.|||||++++|.|.||-.-
T Consensus 89 sedlPLPpgWav~~T~~grkYYIDHn~~tTHW~HPler------------------------------------------ 126 (271)
T KOG1891|consen 89 SEDLPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLER------------------------------------------ 126 (271)
T ss_pred cccCCCCCCcceeeEecCceeEeecCCCcccccChhhh------------------------------------------
Confidence 45779999999999999999999999999999999631
Q ss_pred CcccccccCCCCCCCceEEEcCCCceEEEecCCcccccCCCCccc
Q psy16327 586 GVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQG 630 (994)
Q Consensus 586 ~~~~~~~~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~ 630 (994)
..||+||++.+++.-.+||+||.+|.+|++||....
T Consensus 127 ---------EgLppGW~rv~s~e~GtyY~~~~~k~tQy~HPc~~s 162 (271)
T KOG1891|consen 127 ---------EGLPPGWKRVFSPEKGTYYYHEEMKRTQYEHPCISS 162 (271)
T ss_pred ---------ccCCcchhhccccccceeeeecccchhhhcCCCCCC
Confidence 258999999999999999999999999999998754
No 94
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.18 E-value=3.2e-11 Score=116.88 Aligned_cols=70 Identities=13% Similarity=0.207 Sum_probs=62.3
Q ss_pred CCCCCeEEEeec--c---CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327 148 LKPNPYIELYVD--Y---KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGV 217 (994)
Q Consensus 148 ~~~dPyv~v~~~--g---~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~ 217 (994)
..+||||+|.+- . ..++||+++++++||+|||+|.|.|.. ...|.|.|||+++++++++||++.|+|+++
T Consensus 33 ~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~ 111 (124)
T cd08680 33 ENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADF 111 (124)
T ss_pred CCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhc
Confidence 358999999973 2 247899999999999999999999875 359999999999999999999999999998
No 95
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.18 E-value=3.9e-11 Score=116.71 Aligned_cols=73 Identities=22% Similarity=0.381 Sum_probs=63.7
Q ss_pred CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCC--CCCcccceEEeehhh
Q psy16327 147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTF--RRDCTIGEKRLNIYG 216 (994)
Q Consensus 147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~--~~d~~lG~~~i~l~~ 216 (994)
+..+||||+|.+.+ ..++||+++++++||+|||+|.|.+.. ...|.|.|||++.+ ++|++||++.|+|.+
T Consensus 34 ~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~ 113 (127)
T cd04030 34 SDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSD 113 (127)
T ss_pred CCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEeccc
Confidence 56799999999853 457899999999999999999998864 36899999999986 689999999999999
Q ss_pred hhc
Q psy16327 217 VLA 219 (994)
Q Consensus 217 ~~~ 219 (994)
+..
T Consensus 114 l~~ 116 (127)
T cd04030 114 LDL 116 (127)
T ss_pred ccc
Confidence 843
No 96
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.16 E-value=6.6e-11 Score=114.39 Aligned_cols=71 Identities=25% Similarity=0.423 Sum_probs=62.9
Q ss_pred CCCCCeEEEeecc--C--CceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327 148 LKPNPYIELYVDY--K--NPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVL 218 (994)
Q Consensus 148 ~~~dPyv~v~~~g--~--~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~ 218 (994)
..+||||+|.+.+ . .++||+++++++||.|||+|.|.+.. ...|.|.|||++.++++++||++.|+|.++.
T Consensus 34 ~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~ 112 (123)
T cd08521 34 KRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWD 112 (123)
T ss_pred CCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEeccccc
Confidence 4689999999842 1 46899999999999999999998875 4589999999999999999999999999984
No 97
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.16 E-value=6.6e-11 Score=114.00 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=61.1
Q ss_pred CCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecC---CCeEEEEEecCCCCC-CCcccceEEeehhhhh
Q psy16327 148 LKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP---YSIILFRLLDHRTFR-RDCTIGEKRLNIYGVL 218 (994)
Q Consensus 148 ~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~---~~~l~~~V~D~d~~~-~d~~lG~~~i~l~~~~ 218 (994)
..+||||+|.+.. ..++||+++++++||+|||+|.|.+.. ...|.|.|||++.+. ++++||.+.|+|.++.
T Consensus 30 g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~ 108 (119)
T cd08685 30 GTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIV 108 (119)
T ss_pred CCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhc
Confidence 4689999999953 235689999999999999999998764 247889999999886 4789999999999996
No 98
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.16 E-value=5.7e-11 Score=117.13 Aligned_cols=69 Identities=17% Similarity=0.288 Sum_probs=60.0
Q ss_pred CCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhh
Q psy16327 148 LKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYG 216 (994)
Q Consensus 148 ~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~ 216 (994)
..+||||+|.+... .++||+++++++||+|||.|.|.|.. ...|.|.|||+|.+++|++||.+.|.+..
T Consensus 36 ~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 36 LGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred CCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 34899999998542 25689999999999999999998875 46899999999999999999999998853
No 99
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.15 E-value=9.4e-11 Score=113.67 Aligned_cols=73 Identities=27% Similarity=0.560 Sum_probs=64.9
Q ss_pred CCCCCCeEEEeeccCCceeeeeecC-CCCCCcceEEEEEecCC-----CeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKN-TYQPKWNEEFTVLVSPY-----SIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~-tlnP~Wne~f~~~v~~~-----~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~ 220 (994)
+.++||||+|.+++. .++|+++++ ++||.|||.|.|.+... ..|.|.|||++.+.+|++||.+.|+|.+++..
T Consensus 19 ~~~~dpyv~v~~~~~-~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~ 97 (124)
T cd04049 19 LGKIDPYVIIQCRTQ-ERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEE 97 (124)
T ss_pred CCCcCceEEEEECCE-eeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhC
Confidence 467999999999654 788988874 99999999999988764 68999999999999999999999999999874
No 100
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.13 E-value=1.7e-10 Score=114.04 Aligned_cols=86 Identities=21% Similarity=0.286 Sum_probs=70.0
Q ss_pred CCCCCCeEEEeecc---CCceeeeeecCCCCCCcceEEEEEecC-----------------CCeEEEEEecCCCCCCCcc
Q psy16327 147 LLKPNPYIELYVDY---KNPKTTRVVKNTYQPKWNEEFTVLVSP-----------------YSIILFRLLDHRTFRRDCT 206 (994)
Q Consensus 147 f~~~dPyv~v~~~g---~~~~kT~v~k~tlnP~Wne~f~~~v~~-----------------~~~l~~~V~D~d~~~~d~~ 206 (994)
+..+||||+|.+++ .+.+||+++++++||.|||.|.|.+.. ...|.|.|||++.+++++|
T Consensus 16 ~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~ 95 (137)
T cd08675 16 NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDF 95 (137)
T ss_pred CCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcE
Confidence 45789999999974 558999999999999999999997754 3589999999999989999
Q ss_pred cceEEeehhhhhcccCCccceEEEEeecC
Q psy16327 207 IGEKRLNIYGVLAHYNGKCEHLEITLDLM 235 (994)
Q Consensus 207 lG~~~i~l~~~~~~~~~~~~~~~~~l~L~ 235 (994)
||++.|+|.++... .....|+.|.-+
T Consensus 96 IG~~~i~l~~l~~~---~~~~~W~~L~~~ 121 (137)
T cd08675 96 LGEVRIPLQGLQQA---GSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEehhhccCC---CcccceEecCCc
Confidence 99999999998733 223445544433
No 101
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.13 E-value=1e-10 Score=118.80 Aligned_cols=74 Identities=22% Similarity=0.321 Sum_probs=63.4
Q ss_pred CCCCCCeEEEeec----cCCceeeeeecCCCCCCcceEEEEEec-C----CCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327 147 LLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLVS-P----YSIILFRLLDHRTFRRDCTIGEKRLNIYGV 217 (994)
Q Consensus 147 f~~~dPyv~v~~~----g~~~~kT~v~k~tlnP~Wne~f~~~v~-~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~ 217 (994)
+..+||||+|.+. +..++||+|+++++||+|||.|.|.+. . ...|.|.|||+|.+++|++||++.|+++++
T Consensus 45 ~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~ 124 (162)
T cd04020 45 GGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTG 124 (162)
T ss_pred CCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCcc
Confidence 4679999999883 345789999999999999999999642 2 358999999999999999999999999998
Q ss_pred hcc
Q psy16327 218 LAH 220 (994)
Q Consensus 218 ~~~ 220 (994)
...
T Consensus 125 ~~~ 127 (162)
T cd04020 125 KSY 127 (162)
T ss_pred ccC
Confidence 543
No 102
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.12 E-value=1.5e-10 Score=112.43 Aligned_cols=81 Identities=26% Similarity=0.304 Sum_probs=64.8
Q ss_pred CCCCCeEEEeec--cCCceeeeeecCCCCCCcceEEEEE-ecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327 148 LKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVL-VSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 148 ~~~dPyv~v~~~--g~~~~kT~v~k~tlnP~Wne~f~~~-v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~ 220 (994)
...||||++.+. ..+++||+|+++ +||+|||+|.|. +.. ...|.|.|||+++++++++||++.|+|+++...
T Consensus 35 ~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~ 113 (124)
T cd08389 35 GASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLE 113 (124)
T ss_pred CCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCC
Confidence 447999998773 356789999988 999999999997 653 468999999999999999999999999999332
Q ss_pred cCCccceEEEEe
Q psy16327 221 YNGKCEHLEITL 232 (994)
Q Consensus 221 ~~~~~~~~~~~l 232 (994)
.....|+.|
T Consensus 114 ---~~~~~w~~L 122 (124)
T cd08389 114 ---GETTVWLTL 122 (124)
T ss_pred ---CCceEEEeC
Confidence 234445544
No 103
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.10 E-value=1.3e-10 Score=114.59 Aligned_cols=70 Identities=26% Similarity=0.350 Sum_probs=61.2
Q ss_pred CCCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEec----CCCeEEEEEecCCCCCCCcccceEEeehhh
Q psy16327 147 LLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTFRRDCTIGEKRLNIYG 216 (994)
Q Consensus 147 f~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~----~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~ 216 (994)
+..+||||+|.+.+. .++||+|+++++||.|||+|.|.+. +...|.|+|||+|+++++++||++.|++..
T Consensus 33 ~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 33 SGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC
Confidence 457899999998532 2578999999999999999999886 346899999999999999999999999987
No 104
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.10 E-value=1.3e-10 Score=114.58 Aligned_cols=69 Identities=14% Similarity=0.249 Sum_probs=59.3
Q ss_pred CCCCCCeEEEeecc--C--CceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehh
Q psy16327 147 LLKPNPYIELYVDY--K--NPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIY 215 (994)
Q Consensus 147 f~~~dPyv~v~~~g--~--~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~ 215 (994)
...+||||+|.+.. . .++||+|+++++||+|||+|.|.|.. ...|.|.|||+|.++++++||.+.|...
T Consensus 33 ~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~ 109 (136)
T cd08406 33 KTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA 109 (136)
T ss_pred CCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC
Confidence 45689999999842 2 26789999999999999999998864 4589999999999999999999998664
No 105
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.08 E-value=2.5e-10 Score=149.29 Aligned_cols=98 Identities=18% Similarity=0.294 Sum_probs=75.5
Q ss_pred cCCCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC---CCeEEEEEecCCCCCCCcccceEEeehhhhhccc
Q psy16327 145 GGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP---YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHY 221 (994)
Q Consensus 145 ~~f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~---~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~ 221 (994)
+.|..+||||+|+++.++++||+|+||+.||.|||+|+|.+.. ...|.|+|||+|+|++| .||.+.|+|.+++...
T Consensus 1994 ~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd-~~G~~~i~l~~vv~~~ 2072 (2102)
T PLN03200 1994 QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKS-SLGKVTIQIDRVVMEG 2072 (2102)
T ss_pred cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCC-CCceEEEEHHHHhcCc
Confidence 4578899999999975558899999999999999999986654 25799999999999655 9999999999998752
Q ss_pred CCccceEEEEeecCCCCCCCCCe---EEEec
Q psy16327 222 NGKCEHLEITLDLMNDSRVSPPL---MSVEM 249 (994)
Q Consensus 222 ~~~~~~~~~~l~L~~~~~~~~G~---l~v~~ 249 (994)
... -++.|.++ +.+.|. |.|.+
T Consensus 2073 ---~~~--~~~~L~~~-~~k~G~~~~~~~e~ 2097 (2102)
T PLN03200 2073 ---TYS--GEYSLNPE-SNKDGSSRTLEIEF 2097 (2102)
T ss_pred ---eee--eeeecCcc-cccCCCcceEEEEE
Confidence 222 33445432 233454 66654
No 106
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.07 E-value=2e-10 Score=112.78 Aligned_cols=70 Identities=26% Similarity=0.374 Sum_probs=61.2
Q ss_pred CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhh
Q psy16327 147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYG 216 (994)
Q Consensus 147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~ 216 (994)
+..+||||+|.+.+ ..++||+++++++||+|||+|.|.+.. ...|.|.|||+|.+++|++||.+.|++..
T Consensus 31 ~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 31 NGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred CCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC
Confidence 35689999999853 236899999999999999999998864 35899999999999999999999999975
No 107
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.06 E-value=4.1e-10 Score=109.06 Aligned_cols=73 Identities=22% Similarity=0.356 Sum_probs=62.6
Q ss_pred CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEE-ecC----CCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327 147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVL-VSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGV 217 (994)
Q Consensus 147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~-v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~ 217 (994)
+..+||||+|.+.+ ...+||+++++++||.|||.|.|. +.+ ...|.|+|||++++ ++++||.+.|+|+++
T Consensus 33 ~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l 111 (123)
T cd04035 33 NGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKL 111 (123)
T ss_pred CCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccC
Confidence 46789999999843 336899999999999999999995 433 46899999999999 889999999999999
Q ss_pred hcc
Q psy16327 218 LAH 220 (994)
Q Consensus 218 ~~~ 220 (994)
...
T Consensus 112 ~~~ 114 (123)
T cd04035 112 KPN 114 (123)
T ss_pred CCC
Confidence 765
No 108
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.06 E-value=2.7e-10 Score=112.43 Aligned_cols=71 Identities=21% Similarity=0.350 Sum_probs=61.3
Q ss_pred CCCCCCeEEEeec--c--CCceeeeeecCCCCCCcceEEEEEec----CCCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327 147 LLKPNPYIELYVD--Y--KNPKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTFRRDCTIGEKRLNIYGV 217 (994)
Q Consensus 147 f~~~dPyv~v~~~--g--~~~~kT~v~k~tlnP~Wne~f~~~v~----~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~ 217 (994)
+.++||||+|.+. + ..++||+++++++||.|||+|.|.+. ....|.|+|||++.+++|++||.+.|++.+.
T Consensus 33 ~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 33 NGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence 4578999999983 2 23578999999999999999999875 2458999999999999999999999999875
No 109
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.05 E-value=4.7e-10 Score=112.48 Aligned_cols=68 Identities=25% Similarity=0.313 Sum_probs=59.7
Q ss_pred CCCCCCeEEEeeccC----------------------------CceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEe
Q psy16327 147 LLKPNPYIELYVDYK----------------------------NPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLL 196 (994)
Q Consensus 147 f~~~dPyv~v~~~g~----------------------------~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~ 196 (994)
+..+||||+|.+... +.+||+++++|+||.|||+|.|.+.. ...|.|+||
T Consensus 46 ~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~ 125 (153)
T cd08676 46 NGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIW 125 (153)
T ss_pred CCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEE
Confidence 467999999998531 34789999999999999999998865 579999999
Q ss_pred cCCCCCCCcccceEEeehhhhh
Q psy16327 197 DHRTFRRDCTIGEKRLNIYGVL 218 (994)
Q Consensus 197 D~d~~~~d~~lG~~~i~l~~~~ 218 (994)
|++ |++||.+.|+|+++.
T Consensus 126 D~d----d~~IG~v~i~l~~l~ 143 (153)
T cd08676 126 DHD----DDFLGCVNIPLKDLP 143 (153)
T ss_pred ecC----CCeEEEEEEEHHHhC
Confidence 997 889999999999997
No 110
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.05 E-value=2.2e-10 Score=113.08 Aligned_cols=70 Identities=24% Similarity=0.329 Sum_probs=60.5
Q ss_pred CCCCCCeEEEeecc--C--CceeeeeecCCCCCCcceEEEEEecCC----CeEEEEEecCCCCCCCcccceEEeehhh
Q psy16327 147 LLKPNPYIELYVDY--K--NPKTTRVVKNTYQPKWNEEFTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIYG 216 (994)
Q Consensus 147 f~~~dPyv~v~~~g--~--~~~kT~v~k~tlnP~Wne~f~~~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~~ 216 (994)
..++||||+|.+.+ . .++||+++++++||.|||+|.|.+... ..|.|.|||+|++++|++||.+.|++..
T Consensus 33 ~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~ 110 (136)
T cd08402 33 GGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA 110 (136)
T ss_pred CCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc
Confidence 46799999999943 2 357899999999999999999987643 3799999999999999999999999865
No 111
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.03 E-value=1.4e-09 Score=107.88 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=74.7
Q ss_pred CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec-CCCeEEEEEecCCC-CC---CCcccceEEeehhhhhcccC
Q psy16327 148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRT-FR---RDCTIGEKRLNIYGVLAHYN 222 (994)
Q Consensus 148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~-~~~~l~~~V~D~d~-~~---~d~~lG~~~i~l~~~~~~~~ 222 (994)
.+.+|||+|.+||....+|+++.+++||.|||+|.|... +.+.|.|.||+.+. ++ ++++||.+.|++.+|..
T Consensus 25 ~~~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~--- 101 (146)
T cd04013 25 PKKRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSS--- 101 (146)
T ss_pred CcCCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcC---
Confidence 456899999999986789999999999999999999654 45789999986543 32 67899999999999973
Q ss_pred CccceEEEEeecCCCCC--------CCCCeEEEecCC
Q psy16327 223 GKCEHLEITLDLMNDSR--------VSPPLMSVEMPP 251 (994)
Q Consensus 223 ~~~~~~~~~l~L~~~~~--------~~~G~l~v~~~~ 251 (994)
+.....|+.|.-.+.+. ...+.|.|.+.+
T Consensus 102 ~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf 138 (146)
T cd04013 102 RQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARY 138 (146)
T ss_pred CCcccEEEEeecCCCCCccccccccCCCCEEEEEEEE
Confidence 34445555544433332 233567776644
No 112
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.02 E-value=2.9e-10 Score=112.11 Aligned_cols=68 Identities=19% Similarity=0.322 Sum_probs=57.4
Q ss_pred CCCCCCeEEEeec-cC---CceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeeh
Q psy16327 147 LLKPNPYIELYVD-YK---NPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNI 214 (994)
Q Consensus 147 f~~~dPyv~v~~~-g~---~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l 214 (994)
+..+||||+|.+. |. .++||+++++|+||.|||+|.|.+.. ...|.|.|||+|.+++|++||.+.|..
T Consensus 32 ~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~ 107 (135)
T cd08410 32 SQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQ 107 (135)
T ss_pred CCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcC
Confidence 4579999999973 32 35799999999999999999998853 236999999999999999999987554
No 113
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=98.99 E-value=4.3e-10 Score=110.63 Aligned_cols=69 Identities=25% Similarity=0.338 Sum_probs=59.2
Q ss_pred CCCCCCeEEEeec--cC--CceeeeeecCCCCCCcceEEEEEecCC----CeEEEEEecCCCCCCCcccceEEeehh
Q psy16327 147 LLKPNPYIELYVD--YK--NPKTTRVVKNTYQPKWNEEFTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIY 215 (994)
Q Consensus 147 f~~~dPyv~v~~~--g~--~~~kT~v~k~tlnP~Wne~f~~~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~ 215 (994)
+.++||||+|.+. |. .++||+++++++||.|||+|.|.+... ..|.|+|||+|.+++|++||++.|++.
T Consensus 32 ~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 32 TGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred CCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC
Confidence 4678999999984 32 257899999999999999999987542 369999999999999999999999876
No 114
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=98.99 E-value=1.2e-09 Score=106.98 Aligned_cols=74 Identities=22% Similarity=0.379 Sum_probs=65.2
Q ss_pred CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecCC---CeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327 147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSPY---SIILFRLLDHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~~---~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
...+||||.|.+.+ ...+||+++++++||.|||+|.|.+... ..|.|.|||++.++++++||.+.++|+++..
T Consensus 31 ~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~ 110 (131)
T cd04026 31 NGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIK 110 (131)
T ss_pred CCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCc
Confidence 45689999999963 3578999999999999999999987653 5899999999999999999999999999975
Q ss_pred c
Q psy16327 220 H 220 (994)
Q Consensus 220 ~ 220 (994)
.
T Consensus 111 ~ 111 (131)
T cd04026 111 M 111 (131)
T ss_pred C
Confidence 4
No 115
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=98.96 E-value=8.5e-10 Score=109.05 Aligned_cols=69 Identities=19% Similarity=0.347 Sum_probs=59.4
Q ss_pred CCCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehh
Q psy16327 147 LLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIY 215 (994)
Q Consensus 147 f~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~ 215 (994)
+..+||||+|.+.+. .++||+++++++||+|||.|.|.+.+ ...|.|.|||++.++++++||++.|...
T Consensus 32 ~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~ 108 (137)
T cd08409 32 HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPF 108 (137)
T ss_pred CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCc
Confidence 456899999998542 36799999999999999999998864 3589999999999999999999998753
No 116
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=98.95 E-value=9.9e-10 Score=107.17 Aligned_cols=70 Identities=23% Similarity=0.307 Sum_probs=58.6
Q ss_pred CCCCCeEEEeec--cC--CceeeeeecCCC-CCCcceEEEEEecCC---CeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327 148 LKPNPYIELYVD--YK--NPKTTRVVKNTY-QPKWNEEFTVLVSPY---SIILFRLLDHRTFRRDCTIGEKRLNIYGV 217 (994)
Q Consensus 148 ~~~dPyv~v~~~--g~--~~~kT~v~k~tl-nP~Wne~f~~~v~~~---~~l~~~V~D~d~~~~d~~lG~~~i~l~~~ 217 (994)
..+||||+|.+- |+ .++||+++|+|+ ||+|||+|.|.|... ..|.|.|||++.++++++||.+.+.....
T Consensus 33 ~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 33 LTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred CCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 446999999874 32 368899999996 699999999988753 38889999999999999999999988653
No 117
>KOG1028|consensus
Probab=98.93 E-value=2.4e-09 Score=124.43 Aligned_cols=101 Identities=25% Similarity=0.267 Sum_probs=80.3
Q ss_pred CCCCeEEEeec--cCCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhcccC
Q psy16327 149 KPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN 222 (994)
Q Consensus 149 ~~dPyv~v~~~--g~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~ 222 (994)
.+||||++.+- -+.++||+|.++||||.|||+|.|.|.. ..+|.|+|||+|+|.++++||++.|+|..+.....
T Consensus 187 ~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~ 266 (421)
T KOG1028|consen 187 TSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLST 266 (421)
T ss_pred CCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCcccccccc
Confidence 68999999984 3457899999999999999999998653 46999999999999999999999999888744321
Q ss_pred CccceEEEEeecCCCCC---CCCCeEEEecCCcCC
Q psy16327 223 GKCEHLEITLDLMNDSR---VSPPLMSVEMPPLLR 254 (994)
Q Consensus 223 ~~~~~~~~~l~L~~~~~---~~~G~l~v~~~~~~~ 254 (994)
+.++.+|+.... ...|||.+.+++...
T Consensus 267 -----~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 267 -----TLFWKDLQPSSTDSEELAGELLLSLCYLPT 296 (421)
T ss_pred -----ceeeeccccccCCcccccceEEEEEEeecC
Confidence 335566664322 233899999988653
No 118
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.92 E-value=1.7e-09 Score=106.99 Aligned_cols=69 Identities=20% Similarity=0.393 Sum_probs=59.4
Q ss_pred CCCCCeEEEeecc---C--CceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhh
Q psy16327 148 LKPNPYIELYVDY---K--NPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYG 216 (994)
Q Consensus 148 ~~~dPyv~v~~~g---~--~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~ 216 (994)
..+||||+|.+.. . .++||+++++++||+|||+|.|.+.. ...|.|.|||++.++++++||++.|.+..
T Consensus 34 ~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~ 111 (138)
T cd08408 34 KAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNS 111 (138)
T ss_pred CCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcC
Confidence 4689999999842 2 25799999999999999999998864 35999999999999999999999888764
No 119
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=98.91 E-value=7.4e-09 Score=100.68 Aligned_cols=95 Identities=22% Similarity=0.307 Sum_probs=73.5
Q ss_pred CCCCCCeEEEeecc-----CCceeeeeecCCC-CCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327 147 LLKPNPYIELYVDY-----KNPKTTRVVKNTY-QPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVL 218 (994)
Q Consensus 147 f~~~dPyv~v~~~g-----~~~~kT~v~k~tl-nP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~ 218 (994)
+..+||||+|.+.+ ..++||++++++. ||.|||+|.|.+.. .+.|.|.|||++.+ +|++||.+.++|.++.
T Consensus 22 ~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~-~~~~iG~~~~~l~~l~ 100 (128)
T cd00275 22 GSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSG-DDDFLGQACLPLDSLR 100 (128)
T ss_pred CCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCCC-CCcEeEEEEEEhHHhc
Confidence 56789999999954 3468999988776 99999999997653 35799999999998 8999999999999983
Q ss_pred cccCCccceEEEEeecCCCCC--CCCCeEEEecC
Q psy16327 219 AHYNGKCEHLEITLDLMNDSR--VSPPLMSVEMP 250 (994)
Q Consensus 219 ~~~~~~~~~~~~~l~L~~~~~--~~~G~l~v~~~ 250 (994)
.. . ..++|.+.++ ...|.|.+.++
T Consensus 101 ~g------~--~~~~l~~~~~~~~~~~~l~v~~~ 126 (128)
T cd00275 101 QG------Y--RHVPLLDSKGEPLELSTLFVHID 126 (128)
T ss_pred Cc------e--EEEEecCCCCCCCcceeEEEEEE
Confidence 31 1 3356765544 34577777653
No 120
>KOG0943|consensus
Probab=98.90 E-value=1.2e-10 Score=138.17 Aligned_cols=88 Identities=22% Similarity=0.337 Sum_probs=81.7
Q ss_pred ceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcccccCCCHH
Q psy16327 10 LAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDER 89 (994)
Q Consensus 10 ~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L~~f~~~ 89 (994)
.+..|||| |||-+|+|+..|+- |||..|++++|.......++|+|+|+.+|||...|.-++++
T Consensus 2827 ~a~qVeL~-----PNGdeilVnkdNVi------------EYV~KYAE~~llgk~~i~feAiReGiLDViPenmL~~LT~E 2889 (3015)
T KOG0943|consen 2827 GAGQVELI-----PNGDEILVNKDNVI------------EYVRKYAEHRLLGKAEIPFEAIREGILDVIPENMLEDLTAE 2889 (3015)
T ss_pred CceeEEEe-----cCCceeeecchhHH------------HHHHHHHHhhhheeeeccHHHHHHhHHhhcchhhhcccCHh
Confidence 45678995 99999999999999 99999999999887777899999999999999999999999
Q ss_pred HHHHHHcCCCccChhhhhhcceeCC
Q psy16327 90 ELELILCGMQEIDVEDWQRNAIYRH 114 (994)
Q Consensus 90 EL~~ll~G~~~id~~~l~~~t~y~g 114 (994)
+|.+||||..+++|..|..+|-|-.
T Consensus 2890 DfRLiicG~eeVniqmL~e~TgFlD 2914 (3015)
T KOG0943|consen 2890 DFRLIICGCEEVNIQMLIEFTGFLD 2914 (3015)
T ss_pred HheeeeecccceehhHhhhhccccc
Confidence 9999999999999999999997753
No 121
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=98.89 E-value=3.3e-10 Score=124.32 Aligned_cols=66 Identities=35% Similarity=0.722 Sum_probs=59.1
Q ss_pred CCCceEeecCCCCeeeeeCCCCcccccCCCCC---------CCCceeeeCCCCCeEEEeCCCCcccccCCchhhh
Q psy16327 375 PPGWEIRQDTYGRRYYVDHNTRSSSWERPQPL---------PPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERL 440 (994)
Q Consensus 375 p~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~l---------p~gW~~~~~~~g~~yy~n~~t~~t~w~~P~~~~~ 440 (994)
-..|.+.++++||+||||..|+.++|++|.+| -.+|.+..+.+|++||||.+|+++.|..|...+.
T Consensus 14 ~s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~~e~~l~~~~Wke~~TadGkvyyyN~~TREs~W~iP~e~Kk 88 (590)
T COG5104 14 RSEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEEDLDVDPWKECRTADGKVYYYNSITRESRWKIPPERKK 88 (590)
T ss_pred HHHHHHhhCCCCceEEEecccccccccChHHHhcchHhhhchhhHHHHhhcCCceEEecCccccccccCChhhhc
Confidence 35699999999999999999999999999544 3679999999999999999999999999986543
No 122
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=98.86 E-value=3.8e-09 Score=103.57 Aligned_cols=70 Identities=24% Similarity=0.332 Sum_probs=62.1
Q ss_pred CCCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhh
Q psy16327 147 LLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYG 216 (994)
Q Consensus 147 f~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~ 216 (994)
...+||||+|.+.+. .++||++++++.||.|||+|.|.+.+ ...|.|.|||+++++++++||.+.|+|++
T Consensus 32 ~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 32 KGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred CCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC
Confidence 457899999999653 25789999999999999999998875 46899999999999999999999999988
No 123
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.73 E-value=3.3e-08 Score=90.28 Aligned_cols=73 Identities=34% Similarity=0.575 Sum_probs=65.8
Q ss_pred CCCCCeEEEeeccC--CceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327 148 LKPNPYIELYVDYK--NPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 148 ~~~dPyv~v~~~g~--~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~ 220 (994)
..++|||.+.+.+. +.++|++++++.||.|||+|.|.+.. ...|.|.|||++..+++.+||.+.++|.++...
T Consensus 19 ~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~ 95 (101)
T smart00239 19 GKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLG 95 (101)
T ss_pred CCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccC
Confidence 46899999999775 58999999999999999999998877 689999999999888899999999999988654
No 124
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.71 E-value=2.6e-08 Score=97.17 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=63.6
Q ss_pred CCCCeEEEeecc--CCceeeeeecCCCC--CCcceEEEEEecC-------------------------CCeEEEEEecCC
Q psy16327 149 KPNPYIELYVDY--KNPKTTRVVKNTYQ--PKWNEEFTVLVSP-------------------------YSIILFRLLDHR 199 (994)
Q Consensus 149 ~~dPyv~v~~~g--~~~~kT~v~k~tln--P~Wne~f~~~v~~-------------------------~~~l~~~V~D~d 199 (994)
.+||||++.+.| ..++||.|..+++| |.||+.|.|.+.- ...|.|+|||.|
T Consensus 24 ~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D 103 (133)
T cd08374 24 MSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDND 103 (133)
T ss_pred ccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECc
Confidence 489999999988 45789999999999 9999999985543 348999999999
Q ss_pred CCCCCcccceEEeehhhhhcc
Q psy16327 200 TFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 200 ~~~~d~~lG~~~i~l~~~~~~ 220 (994)
.+++||+||++.++|..+...
T Consensus 104 ~~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 104 KFSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred ccCCCCcceEEEEEhhhcccc
Confidence 999999999999999988654
No 125
>KOG1011|consensus
Probab=98.69 E-value=1.2e-08 Score=116.18 Aligned_cols=102 Identities=20% Similarity=0.331 Sum_probs=82.5
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCC-CeEEEEEecCCCC-----------CCCcccceEEeeh
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPY-SIILFRLLDHRTF-----------RRDCTIGEKRLNI 214 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~-~~l~~~V~D~d~~-----------~~d~~lG~~~i~l 214 (994)
-.++||||.+.| |+.+++|+.|...|||+|||.|.|...++ ..|.++|||.|.- .+|||||...|.+
T Consensus 313 tg~sdpyvt~qv-~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtviev 391 (1283)
T KOG1011|consen 313 TGKSDPYVTAQV-GKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEV 391 (1283)
T ss_pred CCCCCCcEEEee-cccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEE
Confidence 468999999999 78789999999999999999999988875 5999999998863 2479999999888
Q ss_pred hhhhcccCCccceEEEEeecCCCCCCCCCeEEEecCCcCC
Q psy16327 215 YGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEMPPLLR 254 (994)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~L~~~~~~~~G~l~v~~~~~~~ 254 (994)
..+ .|. -++|+.|+-...+..+.|-|.+.++....
T Consensus 392 rtl----sge-mdvwynlekrtdksavsgairlhisveik 426 (1283)
T KOG1011|consen 392 RTL----SGE-MDVWYNLEKRTDKSAVSGAIRLHISVEIK 426 (1283)
T ss_pred Eec----ccc-hhhhcchhhccchhhccceEEEEEEEEEc
Confidence 655 233 35788888777777889977766654443
No 126
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=98.68 E-value=1.9e-08 Score=89.59 Aligned_cols=65 Identities=35% Similarity=0.599 Sum_probs=57.4
Q ss_pred CCCCCCeEEEeeccCCc--eeeeeecCCCCCCcceEEEEEec--CCCeEEEEEecCCCCCCCcccceEE
Q psy16327 147 LLKPNPYIELYVDYKNP--KTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDCTIGEKR 211 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~--~kT~v~k~tlnP~Wne~f~~~v~--~~~~l~~~V~D~d~~~~d~~lG~~~ 211 (994)
...+||||++.+.+... ++|++++++.+|.|||.|.|.+. ....|.|.|||++.+++|++||+++
T Consensus 17 ~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 17 NGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp TSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred CCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 45789999999988655 99999999999999999999865 3457999999999999999999975
No 127
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.67 E-value=8.9e-08 Score=86.88 Aligned_cols=72 Identities=31% Similarity=0.487 Sum_probs=65.9
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVL 218 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~ 218 (994)
...++|||.+.+++....+|.++++++||.|||.|.+.+.. ...|.|.|||++.+.++.+||.+.+++.++.
T Consensus 17 ~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 17 NGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELL 90 (102)
T ss_pred CCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhh
Confidence 35789999999988568999999999999999999998886 6799999999999988999999999999987
No 128
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.66 E-value=3.1e-08 Score=121.40 Aligned_cols=72 Identities=25% Similarity=0.471 Sum_probs=66.2
Q ss_pred CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327 148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
..+||||++.++++..+||+++||||||+|||+|++.|.. ...+.|+|+|||.-.++|+||.+.|+|+.+..
T Consensus 1059 g~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~ 1132 (1227)
T COG5038 1059 GYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEP 1132 (1227)
T ss_pred CCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCc
Confidence 3499999999999989999999999999999999998874 46999999999999999999999999998744
No 129
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.63 E-value=2.1e-08 Score=72.49 Aligned_cols=30 Identities=60% Similarity=1.184 Sum_probs=20.3
Q ss_pred CCCCceEeecCC-CCeeeeeCCCCcccccCC
Q psy16327 374 LPPGWEIRQDTY-GRRYYVDHNTRSSSWERP 403 (994)
Q Consensus 374 lp~~w~~~~~~~-G~~yy~n~~t~~t~w~~P 403 (994)
||+||+++.+++ |+.||||+.|++|+|++|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 566677666654 777777777777777665
No 130
>PLN02223 phosphoinositide phospholipase C
Probab=98.59 E-value=7.3e-08 Score=112.46 Aligned_cols=75 Identities=25% Similarity=0.437 Sum_probs=64.0
Q ss_pred CCCCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327 146 GLLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 146 ~f~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
.+..+||||+|.+.|. ..+||+|.++++||+|||+|.|.+.. -..|.|.|+|+|...+|+|+|.+.|+|+.+..
T Consensus 431 ~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~ 510 (537)
T PLN02223 431 RLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIE 510 (537)
T ss_pred CCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcC
Confidence 3567899999999873 35678888999999999999997753 45899999999999999999999999999855
Q ss_pred c
Q psy16327 220 H 220 (994)
Q Consensus 220 ~ 220 (994)
.
T Consensus 511 G 511 (537)
T PLN02223 511 G 511 (537)
T ss_pred C
Confidence 3
No 131
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.57 E-value=4.7e-08 Score=70.63 Aligned_cols=30 Identities=57% Similarity=1.246 Sum_probs=28.7
Q ss_pred CCCCceEEeCCC-CCeEEEeCCCCceeccCC
Q psy16327 511 LPPGWELRRDPR-GRVYYVDHNTRSTTWQRP 540 (994)
Q Consensus 511 lp~gW~~~~~~~-gr~yy~~~~t~~t~w~~P 540 (994)
||+||++++|++ |++||+|+.|++|+|++|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 799999999886 999999999999999998
No 132
>PLN02952 phosphoinositide phospholipase C
Probab=98.49 E-value=4.2e-07 Score=108.44 Aligned_cols=89 Identities=17% Similarity=0.328 Sum_probs=71.3
Q ss_pred CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327 147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~ 220 (994)
+..+||||+|.+-| ..++||+++++++||.|||+|.|.+.. -..|.|.|||+|...+|+|+|.+.|+|..+...
T Consensus 494 ~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~G 573 (599)
T PLN02952 494 YSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPG 573 (599)
T ss_pred cCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCC
Confidence 45679999999977 346899999999999999999996653 457999999999999999999999999999654
Q ss_pred cCCccceEEEEeecCCCCCCCCC
Q psy16327 221 YNGKCEHLEITLDLMNDSRVSPP 243 (994)
Q Consensus 221 ~~~~~~~~~~~l~L~~~~~~~~G 243 (994)
. -.++|.+..+...+
T Consensus 574 y--------R~VpL~~~~G~~l~ 588 (599)
T PLN02952 574 I--------RSVPLHDKKGEKLK 588 (599)
T ss_pred c--------eeEeCcCCCCCCCC
Confidence 2 24566655444433
No 133
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.42 E-value=2.8e-07 Score=67.20 Aligned_cols=31 Identities=58% Similarity=1.371 Sum_probs=30.0
Q ss_pred CCCCceEEeCCCCCeEEEeCCCCceeccCCC
Q psy16327 511 LPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 541 (994)
Q Consensus 511 lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~ 541 (994)
||.||++.++.+|++||+|+.|++++|++|+
T Consensus 1 lp~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 1 LPPGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 7999999999999999999999999999996
No 134
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=98.37 E-value=1.2e-07 Score=104.58 Aligned_cols=72 Identities=32% Similarity=0.687 Sum_probs=56.8
Q ss_pred CCceeeeCCCCCeEEEeCCCCcccccCCchhhhhhccccccccccccccCCccccCCCCCcCCCCCCccccCCCcccccc
Q psy16327 408 PGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDA 487 (994)
Q Consensus 408 ~gW~~~~~~~g~~yy~n~~t~~t~w~~P~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (994)
..|++..+++||+||||..|+.++|++|..--.+ . +...
T Consensus 15 s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~-~----------------------------------------e~~l 53 (590)
T COG5104 15 SEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKG-S----------------------------------------EEDL 53 (590)
T ss_pred HHHHHhhCCCCceEEEecccccccccChHHHhcc-h----------------------------------------Hhhh
Confidence 3499999999999999999999999999631110 0 0000
Q ss_pred cccCceeeeccCCCCCCCCCCCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327 488 DTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543 (994)
Q Consensus 488 ~~~g~~~~~~~~t~~~~~~~~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~ 543 (994)
--.+|.+..+.+|++||+|..||++.|..|...
T Consensus 54 -----------------------~~~~Wke~~TadGkvyyyN~~TREs~W~iP~e~ 86 (590)
T COG5104 54 -----------------------DVDPWKECRTADGKVYYYNSITRESRWKIPPER 86 (590)
T ss_pred -----------------------chhhHHHHhhcCCceEEecCccccccccCChhh
Confidence 023599999999999999999999999999753
No 135
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.36 E-value=3.6e-07 Score=66.61 Aligned_cols=30 Identities=57% Similarity=1.313 Sum_probs=16.5
Q ss_pred CCCCceEeecCCCCeeeeeCCCCcccccCC
Q psy16327 374 LPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403 (994)
Q Consensus 374 lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P 403 (994)
||+||++..+.+|+.||||+.|++++|++|
T Consensus 1 lp~gW~~~~~~~g~~yy~n~~t~~s~W~~P 30 (32)
T smart00456 1 LPPGWEERKDPDGRPYYYNHETKETQWEKP 30 (32)
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEcCCC
Confidence 355555555555555555555555555555
No 136
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.35 E-value=1.1e-06 Score=108.19 Aligned_cols=99 Identities=24% Similarity=0.351 Sum_probs=79.7
Q ss_pred CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCccc
Q psy16327 148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCE 226 (994)
Q Consensus 148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~~ 226 (994)
...|||+++...+.-..||+++++++||+|||+|.+.+.. .+.|.+.|||.+.+++|+++|.+.++|..++.....+.+
T Consensus 457 ~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne 536 (1227)
T COG5038 457 GTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNE 536 (1227)
T ss_pred CCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccc
Confidence 5689999999887777899999999999999999998875 569999999999999999999999999998776544443
Q ss_pred eEEEEeecCCCCCCCCCeEEEecCC
Q psy16327 227 HLEITLDLMNDSRVSPPLMSVEMPP 251 (994)
Q Consensus 227 ~~~~~l~L~~~~~~~~G~l~v~~~~ 251 (994)
..++. .+....|+|.-++..
T Consensus 537 ~~e~~-----~~~k~vGrL~yDl~f 556 (1227)
T COG5038 537 LYEFL-----RNTKNVGRLTYDLRF 556 (1227)
T ss_pred eeeee-----ccCccceEEEEeeee
Confidence 33332 122356787777643
No 137
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.32 E-value=8.3e-07 Score=105.75 Aligned_cols=74 Identities=16% Similarity=0.314 Sum_probs=63.7
Q ss_pred CCCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEec--CCCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327 147 LLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 147 f~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~ 220 (994)
+..+||||+|.+-|. .++||+|+.++.||.|||+|.|.+. +-..|.|.|+|+|...+|+|+|...|+|..|...
T Consensus 493 ~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~G 572 (598)
T PLN02230 493 YSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQG 572 (598)
T ss_pred CCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCc
Confidence 456899999999762 3578999999999999999999554 3579999999999989999999999999998553
No 138
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.32 E-value=9.1e-07 Score=105.26 Aligned_cols=74 Identities=15% Similarity=0.297 Sum_probs=64.0
Q ss_pred CCCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEec--CCCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327 147 LLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 147 f~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~ 220 (994)
+..+||||+|.+.|. .++||++++++.||.|||+|.|.+. +-..|.|.|+|+|...+|+|+|.+.|+|..|...
T Consensus 476 ~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~G 555 (581)
T PLN02222 476 YSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQG 555 (581)
T ss_pred CCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCc
Confidence 456899999999763 3689999999999999999999554 3479999999999988999999999999998553
No 139
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.27 E-value=1.3e-06 Score=80.60 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=58.5
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~ 220 (994)
++++||||.|++++.++.||+.. .||.|||+|.|.|.....++|.|||+..- ..--+|..=|.|++|...
T Consensus 20 ~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~Vdk~nEiel~VyDk~~~-~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 20 SKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPVEKNNEEEVIVYDKGGD-QPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred ccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEecCCcEEEEEEEeCCCC-eecceeeehhhHHHHHHH
Confidence 57799999999998888899874 78999999999998778999999998432 223568888999999765
No 140
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.25 E-value=1.2e-06 Score=63.25 Aligned_cols=30 Identities=63% Similarity=1.381 Sum_probs=29.0
Q ss_pred CCCceEEeCCCCCeEEEeCCCCceeccCCC
Q psy16327 512 PPGWELRRDPRGRVYYVDHNTRSTTWQRPN 541 (994)
Q Consensus 512 p~gW~~~~~~~gr~yy~~~~t~~t~w~~P~ 541 (994)
|+||++.++.+|++||+|+.|++++|++|+
T Consensus 1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 789999999999999999999999999997
No 141
>KOG2059|consensus
Probab=98.22 E-value=1.9e-06 Score=100.79 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=88.3
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCC-CeEEEEEecCCCCCCCcccceEEeehhhhhcccCCcc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPY-SIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKC 225 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~-~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~ 225 (994)
-...||||.|.+|.+...+|.++-|+|-|-|-|+|.|.+-.. ..|.|-|||.| ++.|+.||.+.|+=.+|-... |.
T Consensus 23 ~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~-~~- 99 (800)
T KOG2059|consen 23 SGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYP-GK- 99 (800)
T ss_pred CCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccccceeeeeHHHHhhCC-CC-
Confidence 345799999999999899999999999999999999977654 68999999999 999999999999999886654 33
Q ss_pred ceEEEEeecCCCCCCCCCeEEEecCC
Q psy16327 226 EHLEITLDLMNDSRVSPPLMSVEMPP 251 (994)
Q Consensus 226 ~~~~~~l~L~~~~~~~~G~l~v~~~~ 251 (994)
+.|+.|.--+++..+.|+++|.+..
T Consensus 100 -d~W~~L~~VD~dsEVQG~v~l~l~~ 124 (800)
T KOG2059|consen 100 -DTWFSLQPVDPDSEVQGKVHLELAL 124 (800)
T ss_pred -ccceeccccCCChhhceeEEEEEEe
Confidence 4688888888999999999888743
No 142
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.19 E-value=1.4e-06 Score=62.86 Aligned_cols=29 Identities=59% Similarity=1.250 Sum_probs=16.5
Q ss_pred CCCceEeecCCCCeeeeeCCCCcccccCC
Q psy16327 375 PPGWEIRQDTYGRRYYVDHNTRSSSWERP 403 (994)
Q Consensus 375 p~~w~~~~~~~G~~yy~n~~t~~t~w~~P 403 (994)
|+||+...+.+|+.||||+.|++|+|++|
T Consensus 1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P 29 (31)
T cd00201 1 PPGWEERWDPDGRVYYYNHNTKETQWEDP 29 (31)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeCCCC
Confidence 44555555555555555555555555555
No 143
>KOG0155|consensus
Probab=98.19 E-value=1.8e-06 Score=97.63 Aligned_cols=31 Identities=35% Similarity=0.706 Sum_probs=29.0
Q ss_pred CCceEeecCCCCeeeeeCCCCcccccCCCCC
Q psy16327 376 PGWEIRQDTYGRRYYVDHNTRSSSWERPQPL 406 (994)
Q Consensus 376 ~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~l 406 (994)
++|.++..|+|..||+|..|..+||++|..|
T Consensus 12 s~wtef~ap~G~pyy~ns~t~~st~ekP~~l 42 (617)
T KOG0155|consen 12 SGWTEFKAPDGIPYYWNSETLESTWEKPSFL 42 (617)
T ss_pred CCCccCCCCCCcceecccccccchhhCchhh
Confidence 8999999999999999999999999999544
No 144
>KOG1031|consensus
Probab=98.10 E-value=5.8e-06 Score=93.92 Aligned_cols=99 Identities=20% Similarity=0.298 Sum_probs=74.9
Q ss_pred CCCCeEEEeeccCCceeeeeecCCCCCCcc-eEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhcccC-
Q psy16327 149 KPNPYIELYVDYKNPKTTRVVKNTYQPKWN-EEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN- 222 (994)
Q Consensus 149 ~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wn-e~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~- 222 (994)
..|-||+|++ +..++||.|..|+|||.|| +.|.|.|.+ ...|.|+|.|||++..+|-||.+.|+|..+.-...
T Consensus 24 ~tdafveik~-~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aa 102 (1169)
T KOG1031|consen 24 LTDAFVEIKF-ANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAA 102 (1169)
T ss_pred cchheeEEEe-cccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHH
Confidence 3589999999 5559999999999999998 778888874 45999999999999999999999999988874321
Q ss_pred ----CccceEEEEeecCCCCCCCCCeEEEe
Q psy16327 223 ----GKCEHLEITLDLMNDSRVSPPLMSVE 248 (994)
Q Consensus 223 ----~~~~~~~~~l~L~~~~~~~~G~l~v~ 248 (994)
|+-..+.-+.++-+.-....|||.|.
T Consensus 103 qavhgkgtvisgw~pifdtihgirgeinvi 132 (1169)
T KOG1031|consen 103 QAVHGKGTVISGWFPIFDTIHGIRGEINVI 132 (1169)
T ss_pred hhhcCCceEEeeeeecceecccccceeEEE
Confidence 11112223445555445566775554
No 145
>KOG1028|consensus
Probab=98.08 E-value=3.3e-06 Score=98.51 Aligned_cols=68 Identities=28% Similarity=0.340 Sum_probs=57.0
Q ss_pred CCCCCeEEEeec--c--CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehh
Q psy16327 148 LKPNPYIELYVD--Y--KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIY 215 (994)
Q Consensus 148 ~~~dPyv~v~~~--g--~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~ 215 (994)
..+||||++.+- + ..++||.++++++||+|||.|.|.|.+ ...|.|+|||+|+++++++||.+.+...
T Consensus 317 ~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~ 392 (421)
T KOG1028|consen 317 GLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSD 392 (421)
T ss_pred CCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCC
Confidence 458999999872 3 236889999999999999999997764 3589999999999999999998765554
No 146
>PLN02228 Phosphoinositide phospholipase C
Probab=98.06 E-value=1.3e-05 Score=95.33 Aligned_cols=96 Identities=14% Similarity=0.243 Sum_probs=73.8
Q ss_pred CCCCCCeEEEeeccC----CceeeeeecCCCCCCc-ceEEEEEec--CCCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327 147 LLKPNPYIELYVDYK----NPKTTRVVKNTYQPKW-NEEFTVLVS--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 147 f~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~W-ne~f~~~v~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
+..+||||+|.+.|. ..+||++++++.||.| ||+|.|.+. +-..|.|.|+|+|.+..|+|+|.+.|+|..|..
T Consensus 455 ~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~ 534 (567)
T PLN02228 455 YSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKS 534 (567)
T ss_pred CCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhC
Confidence 445899999999773 3579999999999999 999999655 346999999999999999999999999999854
Q ss_pred ccCCccceEEEEeecCCCCCCC--CCeEEEecC
Q psy16327 220 HYNGKCEHLEITLDLMNDSRVS--PPLMSVEMP 250 (994)
Q Consensus 220 ~~~~~~~~~~~~l~L~~~~~~~--~G~l~v~~~ 250 (994)
.. -.+.|.+..+.. ...|.|.+.
T Consensus 535 GY--------R~VpL~~~~G~~l~~atLfv~~~ 559 (567)
T PLN02228 535 GV--------RAVRLHDRAGKAYKNTRLLVSFA 559 (567)
T ss_pred Ce--------eEEEccCCCCCCCCCeEEEEEEE
Confidence 31 234565544432 335666654
No 147
>PLN02270 phospholipase D alpha
Probab=98.06 E-value=1.2e-05 Score=98.02 Aligned_cols=98 Identities=16% Similarity=0.292 Sum_probs=78.6
Q ss_pred CCCCCeEEEeeccCCceeeeeecCC-CCCCcceEEEEEe-cCCCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCcc
Q psy16327 148 LKPNPYIELYVDYKNPKTTRVVKNT-YQPKWNEEFTVLV-SPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKC 225 (994)
Q Consensus 148 ~~~dPyv~v~~~g~~~~kT~v~k~t-lnP~Wne~f~~~v-~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~ 225 (994)
..+||||.|.+++....+|.|+++. .||+|||.|.+.+ ...+.|.|+|.|.|-++.. +||.+.|++.+|+... .
T Consensus 45 ~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~~~v~f~vkd~~~~g~~-~ig~~~~p~~~~~~g~---~ 120 (808)
T PLN02270 45 GESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGAT-LIGRAYIPVEEILDGE---E 120 (808)
T ss_pred CCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCcceEEEEEecCCccCce-EEEEEEEEHHHhcCCC---c
Confidence 4689999999998888999999885 6999999999966 4678999999999988776 9999999999998752 2
Q ss_pred ceEEEEeecCCCCCC-C-CC-eEEEecCC
Q psy16327 226 EHLEITLDLMNDSRV-S-PP-LMSVEMPP 251 (994)
Q Consensus 226 ~~~~~~l~L~~~~~~-~-~G-~l~v~~~~ 251 (994)
++-++++.+++++ . .| +|.|.+..
T Consensus 121 --i~~~~~~~~~~~~p~~~~~~~~~~~~f 147 (808)
T PLN02270 121 --VDRWVEILDNDKNPIHGGSKIHVKLQY 147 (808)
T ss_pred --cccEEeccCCCCCcCCCCCEEEEEEEE
Confidence 3355677766553 2 33 67776654
No 148
>KOG1328|consensus
Probab=98.04 E-value=2.2e-06 Score=99.92 Aligned_cols=72 Identities=26% Similarity=0.423 Sum_probs=62.9
Q ss_pred CCCCCeEEEeeccC------CceeeeeecCCCCCCcceEEEEEecC------CCeEEEEEecCCCCCCCcccceEEeehh
Q psy16327 148 LKPNPYIELYVDYK------NPKTTRVVKNTYQPKWNEEFTVLVSP------YSIILFRLLDHRTFRRDCTIGEKRLNIY 215 (994)
Q Consensus 148 ~~~dPyv~v~~~g~------~~~kT~v~k~tlnP~Wne~f~~~v~~------~~~l~~~V~D~d~~~~d~~lG~~~i~l~ 215 (994)
..+||||+|.+.-. ...||+|+++||||+++|.|+|.|.+ ...|.|+|+|||-++.+||-|+|-+.|+
T Consensus 966 GlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg 1045 (1103)
T KOG1328|consen 966 GLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELG 1045 (1103)
T ss_pred CCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhC
Confidence 56899999998542 24799999999999999999998874 3489999999999999999999999998
Q ss_pred hhhc
Q psy16327 216 GVLA 219 (994)
Q Consensus 216 ~~~~ 219 (994)
+|--
T Consensus 1046 ~vpG 1049 (1103)
T KOG1328|consen 1046 DVPG 1049 (1103)
T ss_pred CCCC
Confidence 8853
No 149
>KOG0169|consensus
Probab=97.95 E-value=9.7e-06 Score=96.71 Aligned_cols=73 Identities=23% Similarity=0.381 Sum_probs=62.4
Q ss_pred CCCCCeEEEeeccC----Cceeee-eecCCCCCCcceEEEEEec--CCCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327 148 LKPNPYIELYVDYK----NPKTTR-VVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 148 ~~~dPyv~v~~~g~----~~~kT~-v~k~tlnP~Wne~f~~~v~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~ 220 (994)
...||||.|.+-|. ...||+ |..++.||.|+|+|+|.++ +-..|.|.|+|+|...+|||+|...|+++++...
T Consensus 639 ~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~G 718 (746)
T KOG0169|consen 639 EISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQG 718 (746)
T ss_pred ccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCc
Confidence 44799999998773 257898 6678889999999999776 4569999999999999999999999999999653
No 150
>KOG1328|consensus
Probab=97.85 E-value=6.4e-06 Score=96.16 Aligned_cols=83 Identities=19% Similarity=0.273 Sum_probs=66.4
Q ss_pred ceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCC------------------------------------CC
Q psy16327 163 PKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFR------------------------------------RD 204 (994)
Q Consensus 163 ~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~------------------------------------~d 204 (994)
.|-|+|+++||||+|||.|.|.|.+ .+.+.+.|||||.-. .|
T Consensus 178 Ikatsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tD 257 (1103)
T KOG1328|consen 178 IKATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTD 257 (1103)
T ss_pred hhhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcccc
Confidence 4679999999999999999998875 458999999998521 17
Q ss_pred cccceEEeehhhhhcccCCccceEEEEeecCCCCCCCCCeEEEec
Q psy16327 205 CTIGEKRLNIYGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEM 249 (994)
Q Consensus 205 ~~lG~~~i~l~~~~~~~~~~~~~~~~~l~L~~~~~~~~G~l~v~~ 249 (994)
||||-++|+|++|-.. ++ +.|++|+...+...+.|.+.+.+
T Consensus 258 DFLGciNipl~EiP~~---Gl-d~WFkLepRS~~S~VqG~~~Lkl 298 (1103)
T KOG1328|consen 258 DFLGCINIPLAEIPPD---GL-DQWFKLEPRSDKSKVQGQVKLKL 298 (1103)
T ss_pred ccccccccchhcCCcc---hH-HHHhccCcccccccccceEEEEE
Confidence 9999999999999654 22 35788888888888999655554
No 151
>KOG2059|consensus
Probab=97.77 E-value=4.4e-05 Score=89.84 Aligned_cols=160 Identities=16% Similarity=0.137 Sum_probs=101.8
Q ss_pred CCCHHHHH-HHHcCCCccChhhhhhcceeCCc------cCCCccee-------eEEEEecCccccccccccccCcC---C
Q psy16327 85 YFDERELE-LILCGMQEIDVEDWQRNAIYRHY------TRNSKQTT-------RVVKNTYQPKWNEEFTVGGQGGG---L 147 (994)
Q Consensus 85 ~f~~~EL~-~ll~G~~~id~~~l~~~t~y~gy------~~~s~~i~-------~fw~~f~~~~e~~~F~~~~~~~~---f 147 (994)
+++.+ |. -.+.|.--|.-++|..+-..+++ ++|+. |+ .+|+..=..--+.. ...-+ .+ +
T Consensus 72 v~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsE-VQG~v~l~l~~~e~~~~~~~~c~-~L~~r-~~~P~~ 147 (800)
T KOG2059|consen 72 VWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSE-VQGKVHLELALTEAIQSSGLVCH-VLKTR-QGLPII 147 (800)
T ss_pred Eeccc-cccccccceeeeeHHHHhhCCCCccceeccccCCChh-hceeEEEEEEeccccCCCcchhh-hhhhc-ccCcee
Confidence 56666 54 56677777888888877755542 44443 33 23332100000000 00000 01 1
Q ss_pred -CCCCCeEEEeeccC---CceeeeeecCCCCCCcceEEEEEecCC-----------------CeEEEEEec-CCCCCCCc
Q psy16327 148 -LKPNPYIELYVDYK---NPKTTRVVKNTYQPKWNEEFTVLVSPY-----------------SIILFRLLD-HRTFRRDC 205 (994)
Q Consensus 148 -~~~dPyv~v~~~g~---~~~kT~v~k~tlnP~Wne~f~~~v~~~-----------------~~l~~~V~D-~d~~~~d~ 205 (994)
...|||++|+..|. +.++|+++|||.||.|||.|.|.+... ..|.+.+|+ ++...+++
T Consensus 148 ~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~ 227 (800)
T KOG2059|consen 148 NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDV 227 (800)
T ss_pred CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhh
Confidence 23899999999763 236999999999999999999988754 267889999 67777799
Q ss_pred ccceEEeehhhhhcccCCccceEEEEeecCCCCC-----CCCCeEEEecCC
Q psy16327 206 TIGEKRLNIYGVLAHYNGKCEHLEITLDLMNDSR-----VSPPLMSVEMPP 251 (994)
Q Consensus 206 ~lG~~~i~l~~~~~~~~~~~~~~~~~l~L~~~~~-----~~~G~l~v~~~~ 251 (994)
|||++.|++..+... .-..-|+.|+...... ...|.+.|.+.+
T Consensus 228 FlGevrv~v~~~~~~---s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y 275 (800)
T KOG2059|consen 228 FLGEVRVPVDVLRQK---SSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTY 275 (800)
T ss_pred hceeEEeehhhhhhc---cCccceEEEecCCCcccCCCCCCccceeeeEEe
Confidence 999999999888632 1234577777763222 345667777654
No 152
>PLN02964 phosphatidylserine decarboxylase
Probab=97.48 E-value=9.2e-05 Score=89.61 Aligned_cols=71 Identities=13% Similarity=0.301 Sum_probs=62.3
Q ss_pred CCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCC--eEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327 150 PNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS--IILFRLLDHRTFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 150 ~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~--~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~ 220 (994)
.|||..+..-|+|+.||...|+|+||+|||...|.|.++. ...|.|||++++++++++|.+.++|.++...
T Consensus 68 ~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 68 KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHH
Confidence 4898765555999999999999999999999999887653 6799999999999999999999999887654
No 153
>KOG1264|consensus
Probab=97.46 E-value=0.00025 Score=84.10 Aligned_cols=70 Identities=21% Similarity=0.394 Sum_probs=59.0
Q ss_pred CCCeEEEeecc-----CCceeeeeecCCCCCCcc-eEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327 150 PNPYIELYVDY-----KNPKTTRVVKNTYQPKWN-EEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 150 ~dPyv~v~~~g-----~~~~kT~v~k~tlnP~Wn-e~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
.-|||+|.+=| ...++|.|+.+.|||+|| |.|+|.|.+ -..|.|.|+|.|.|....|||.|..+|..|..
T Consensus 1085 ~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1085 ACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred cCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhc
Confidence 45999999855 334566788999999999 999997764 35899999999999988899999999988843
No 154
>KOG3259|consensus
Probab=97.46 E-value=5.9e-05 Score=72.42 Aligned_cols=33 Identities=45% Similarity=1.063 Sum_probs=24.6
Q ss_pred CCCCCceeeeCC-CCCeEEEeCCCCcccccCCch
Q psy16327 405 PLPPGWELRRDP-RGRVYYVDHNTRSTTWQRPNS 437 (994)
Q Consensus 405 ~lp~gW~~~~~~-~g~~yy~n~~t~~t~w~~P~~ 437 (994)
.||+||+++++. .||.||+|+.|++++|++|..
T Consensus 6 ~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~ 39 (163)
T KOG3259|consen 6 KLPPGWEKRMSRSSGRPYYFNTETNESQWERPSG 39 (163)
T ss_pred cCCchhheeccccCCCcceeccccchhhccCCCc
Confidence 477777777776 677777777777777777763
No 155
>KOG3259|consensus
Probab=97.40 E-value=7.7e-05 Score=71.65 Aligned_cols=37 Identities=41% Similarity=0.942 Sum_probs=32.7
Q ss_pred CCCCCCceEEeCCC-CCeEEEeCCCCceeccCCChhhh
Q psy16327 509 QPLPPGWELRRDPR-GRVYYVDHNTRSTTWQRPNSERL 545 (994)
Q Consensus 509 ~~lp~gW~~~~~~~-gr~yy~~~~t~~t~w~~P~~~~~ 545 (994)
..||+||+.+.+.. ||+||+|+.|++.+|+.|.....
T Consensus 5 ~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t~~ 42 (163)
T KOG3259|consen 5 EKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGTSK 42 (163)
T ss_pred ccCCchhheeccccCCCcceeccccchhhccCCCcccc
Confidence 36999999999765 99999999999999999986543
No 156
>KOG0155|consensus
Probab=96.98 E-value=0.00081 Score=76.71 Aligned_cols=32 Identities=34% Similarity=0.815 Sum_probs=29.8
Q ss_pred CCCCceeeeCCCCCeEEEeCCCCcccccCCch
Q psy16327 406 LPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS 437 (994)
Q Consensus 406 lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~~ 437 (994)
.|++|.+.-.++|..||+|..|...+|++|..
T Consensus 10 aps~wtef~ap~G~pyy~ns~t~~st~ekP~~ 41 (617)
T KOG0155|consen 10 APSGWTEFKAPDGIPYYWNSETLESTWEKPSF 41 (617)
T ss_pred CCCCCccCCCCCCcceecccccccchhhCchh
Confidence 45899999999999999999999999999974
No 157
>PLN02352 phospholipase D epsilon
Probab=96.94 E-value=0.0022 Score=78.59 Aligned_cols=89 Identities=17% Similarity=0.329 Sum_probs=66.7
Q ss_pred CCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec-CC-CeEEEEEecCCCCCCCcccceEEeehhhhhcccCCccceE
Q psy16327 151 NPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PY-SIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCEHL 228 (994)
Q Consensus 151 dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~-~~-~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~~~~ 228 (994)
||||.|.+++....+| ++.-||+|||.|.+.+- .. +.+.|+|.| +-.+||.+.|++.+|+... . .+
T Consensus 37 ~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-----~~~~ig~~~~p~~~~~~g~---~-~~ 104 (758)
T PLN02352 37 ATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-----KCSILGRFHIQAHQIVTEA---S-FI 104 (758)
T ss_pred CceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec-----CCeEEEEEEEEHHHhhCCC---c-cc
Confidence 9999999988777788 55569999999999664 45 689999999 3569999999999998742 1 13
Q ss_pred EEEeecCCCCC-CCCC-eEEEecCC
Q psy16327 229 EITLDLMNDSR-VSPP-LMSVEMPP 251 (994)
Q Consensus 229 ~~~l~L~~~~~-~~~G-~l~v~~~~ 251 (994)
+-++++.+.++ ...| +|.|.+..
T Consensus 105 ~~~~~~~~~~~~p~~~~~~~~~~~~ 129 (758)
T PLN02352 105 NGFFPLIMENGKPNPELKLRFMLWF 129 (758)
T ss_pred ceEEEcccCCCCCCCCCEEEEEEEE
Confidence 35566766554 3344 66666644
No 158
>KOG0905|consensus
Probab=96.88 E-value=0.00056 Score=84.31 Aligned_cols=70 Identities=20% Similarity=0.373 Sum_probs=59.7
Q ss_pred CCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEE-----ecCCCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327 149 KPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVL-----VSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVL 218 (994)
Q Consensus 149 ~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~-----v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~ 218 (994)
-|||||+..+-- ..++||||+.||.||.+||.+... +-.+..|.+.||.++.+..+.|||.+.|+|.++-
T Consensus 1544 ~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~ 1622 (1639)
T KOG0905|consen 1544 DPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVD 1622 (1639)
T ss_pred CCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcc
Confidence 489999999842 347899999999999999988764 1234699999999999999999999999999873
No 159
>KOG1013|consensus
Probab=96.84 E-value=0.00088 Score=73.12 Aligned_cols=67 Identities=24% Similarity=0.285 Sum_probs=56.5
Q ss_pred CCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecCCC----eEEEEEecCCCCCCCcccceEEeeh
Q psy16327 148 LKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSPYS----IILFRLLDHRTFRRDCTIGEKRLNI 214 (994)
Q Consensus 148 ~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~~~----~l~~~V~D~d~~~~d~~lG~~~i~l 214 (994)
..+||||.+.+.- ..++||.+.|+|+||++|++|.+.+.+.+ .+.|.|||++..+..|++|-...-+
T Consensus 252 g~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 252 GYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG 326 (362)
T ss_pred CCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccc
Confidence 4589999988742 33689999999999999999999888765 8899999999998999998865433
No 160
>KOG3837|consensus
Probab=95.96 E-value=0.013 Score=65.70 Aligned_cols=88 Identities=19% Similarity=0.269 Sum_probs=70.9
Q ss_pred ccCCceeeeeecCCCCCCcceEEEEEecC-------------CCeEEEEEecCCCC-CCCcccceEEeehhhhhcccCCc
Q psy16327 159 DYKNPKTTRVVKNTYQPKWNEEFTVLVSP-------------YSIILFRLLDHRTF-RRDCTIGEKRLNIYGVLAHYNGK 224 (994)
Q Consensus 159 ~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-------------~~~l~~~V~D~d~~-~~d~~lG~~~i~l~~~~~~~~~~ 224 (994)
|-.++.||.|||.|..|.++|.|.+++.. .--+.|+||.+--| ++|.|+|.+.|+|.-|-..
T Consensus 401 D~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~---- 476 (523)
T KOG3837|consen 401 DSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENM---- 476 (523)
T ss_pred cccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceeeeeehhhhcc----
Confidence 45668899999999999999999998875 12688999997765 6899999999999876332
Q ss_pred cceEEEEeecCCCCCCCCCeEEEecCC
Q psy16327 225 CEHLEITLDLMNDSRVSPPLMSVEMPP 251 (994)
Q Consensus 225 ~~~~~~~l~L~~~~~~~~G~l~v~~~~ 251 (994)
+ .+..+++|++..+.+.|+|-|.+..
T Consensus 477 c-ei~e~~~l~DGRK~vGGkLevKvRi 502 (523)
T KOG3837|consen 477 C-EICEYLPLKDGRKAVGGKLEVKVRI 502 (523)
T ss_pred c-chhhceeccccccccCCeeEEEEEE
Confidence 2 2346789999999999988777643
No 161
>KOG1326|consensus
Probab=95.50 E-value=0.0051 Score=75.50 Aligned_cols=70 Identities=20% Similarity=0.339 Sum_probs=58.3
Q ss_pred CCCCCCeEEEeeccCC-ceeeeeecCCCCCCcceEEEEEe--cCCCeEEEEEecCCCCCCCcccceEEeehhh
Q psy16327 147 LLKPNPYIELYVDYKN-PKTTRVVKNTYQPKWNEEFTVLV--SPYSIILFRLLDHRTFRRDCTIGEKRLNIYG 216 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~-~~kT~v~k~tlnP~Wne~f~~~v--~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~ 216 (994)
-.+.|||+.|.++++. .-+..-+.+||||++.+.|++.. .-...|.+.|||+|.+.+|+.+|+..|+|..
T Consensus 631 ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 631 NGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred CCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhh
Confidence 4678999999996542 25678999999999999998844 3456899999999999999999999988753
No 162
>KOG1011|consensus
Probab=94.87 E-value=0.053 Score=63.54 Aligned_cols=69 Identities=25% Similarity=0.365 Sum_probs=58.0
Q ss_pred CeEEEeecc------CCceeeeeecCCCCCCcceEEEEEecCC-----CeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327 152 PYIELYVDY------KNPKTTRVVKNTYQPKWNEEFTVLVSPY-----SIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 152 Pyv~v~~~g------~~~~kT~v~k~tlnP~Wne~f~~~v~~~-----~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~ 220 (994)
|||+|.+-| +.+..||.+.++..|++||+|.|.+... -.|.|.|.|+---+.|..+|.+.+.|.++.+.
T Consensus 1147 PFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~k 1226 (1283)
T KOG1011|consen 1147 PFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADK 1226 (1283)
T ss_pred cceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHhhc
Confidence 899999866 2234478888888999999999988643 28999999998788899999999999999776
No 163
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=94.75 E-value=0.074 Score=51.22 Aligned_cols=75 Identities=17% Similarity=0.345 Sum_probs=59.2
Q ss_pred CCCCeEEEee---ccCCceeeeeecCCCCCCcceEEEEEec-----------------CCCeEEEEEecCCCC-------
Q psy16327 149 KPNPYIELYV---DYKNPKTTRVVKNTYQPKWNEEFTVLVS-----------------PYSIILFRLLDHRTF------- 201 (994)
Q Consensus 149 ~~dPyv~v~~---~g~~~~kT~v~k~tlnP~Wne~f~~~v~-----------------~~~~l~~~V~D~d~~------- 201 (994)
.-++||++.+ .++..++|.++-++.-|.+|-.++|... +.+.+.|+||....-
T Consensus 32 GVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~ 111 (143)
T cd08683 32 GVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK 111 (143)
T ss_pred ccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence 4579999884 4555899999999999999999998554 245899999986432
Q ss_pred ---CCCcccceEEeehhhhhcccCC
Q psy16327 202 ---RRDCTIGEKRLNIYGVLAHYNG 223 (994)
Q Consensus 202 ---~~d~~lG~~~i~l~~~~~~~~~ 223 (994)
.+|-+||.++|++.+++..-+|
T Consensus 112 ~~~~~DilLG~v~IPl~~Ll~~rsG 136 (143)
T cd08683 112 IETSGDILLGTVKIPLRDLLTKRSG 136 (143)
T ss_pred cCcCCcEEEEEEEeeHHHHhhcccC
Confidence 2456789999999999887554
No 164
>KOG1326|consensus
Probab=94.40 E-value=0.028 Score=69.28 Aligned_cols=67 Identities=22% Similarity=0.281 Sum_probs=55.1
Q ss_pred CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEE-ec----------CCCeEEEEEecCCCCCCCcccceEEeehh
Q psy16327 148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVL-VS----------PYSIILFRLLDHRTFRRDCTIGEKRLNIY 215 (994)
Q Consensus 148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~-v~----------~~~~l~~~V~D~d~~~~d~~lG~~~i~l~ 215 (994)
-.+|||+.|..-|+ .++|.++++||||.||...+|. |. +--.+.|.|||.|+..+++|+|.......
T Consensus 225 ~~sdp~a~v~f~~q-s~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~ 302 (1105)
T KOG1326|consen 225 DESDPDAAVEFCGQ-SKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPY 302 (1105)
T ss_pred cCCCchhhhhcccc-cceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceE
Confidence 45899999888555 8999999999999999998882 11 12378899999999999999999875554
No 165
>KOG1327|consensus
Probab=92.95 E-value=0.24 Score=58.51 Aligned_cols=74 Identities=26% Similarity=0.381 Sum_probs=58.2
Q ss_pred cCCCCCCCeEEEee---cc--CCceeeeeecCCCCCCcceEEEEEe------cCCCeEEEEEecCCCCCCCcccceEEee
Q psy16327 145 GGLLKPNPYIELYV---DY--KNPKTTRVVKNTYQPKWNEEFTVLV------SPYSIILFRLLDHRTFRRDCTIGEKRLN 213 (994)
Q Consensus 145 ~~f~~~dPyv~v~~---~g--~~~~kT~v~k~tlnP~Wne~f~~~v------~~~~~l~~~V~D~d~~~~d~~lG~~~i~ 213 (994)
-.|.++|||.++.- +| ...++|.+++++|||.|-. |.+.+ .....+.+.|||++.-++++++|.+...
T Consensus 152 d~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt 230 (529)
T KOG1327|consen 152 DFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTT 230 (529)
T ss_pred cccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEeccc
Confidence 45789999987553 23 2358999999999999986 23322 1346888999999999999999999999
Q ss_pred hhhhhc
Q psy16327 214 IYGVLA 219 (994)
Q Consensus 214 l~~~~~ 219 (994)
++++..
T Consensus 231 ~~~~~~ 236 (529)
T KOG1327|consen 231 LSELQE 236 (529)
T ss_pred HHHhcc
Confidence 999865
No 166
>KOG2060|consensus
Probab=92.85 E-value=0.053 Score=60.60 Aligned_cols=78 Identities=15% Similarity=0.276 Sum_probs=62.2
Q ss_pred ccccccCcCCCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecCC-CeEEEEEec-CCCCCCCcccceEE
Q psy16327 138 FTVGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSPY-SIILFRLLD-HRTFRRDCTIGEKR 211 (994)
Q Consensus 138 F~~~~~~~~f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~~-~~l~~~V~D-~d~~~~d~~lG~~~ 211 (994)
+.+...+|. .++|||+|.+-+ ..++||+...||++|..-....|.-.+. ..|.+.||. +-++-.+.|||.++
T Consensus 281 l~~k~~~k~--~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aq 358 (405)
T KOG2060|consen 281 LVVKPGSKS--LPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQ 358 (405)
T ss_pred ccccCCccc--ccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccccccchHHHhhHHH
Confidence 344444443 789999999843 3378999999999999988888877754 699999996 77777889999999
Q ss_pred eehhhh
Q psy16327 212 LNIYGV 217 (994)
Q Consensus 212 i~l~~~ 217 (994)
|-+.++
T Consensus 359 i~l~eL 364 (405)
T KOG2060|consen 359 IMLDEL 364 (405)
T ss_pred HHhhhh
Confidence 888877
No 167
>KOG1013|consensus
Probab=92.64 E-value=0.036 Score=60.90 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=70.1
Q ss_pred CCCCCeEEEeec-c---CCceeeeeecCCCCCCcceEEEE-EecCC----CeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327 148 LKPNPYIELYVD-Y---KNPKTTRVVKNTYQPKWNEEFTV-LVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIYGVL 218 (994)
Q Consensus 148 ~~~dPyv~v~~~-g---~~~~kT~v~k~tlnP~Wne~f~~-~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~ 218 (994)
...|||+++.+. | -.+.+|++..+++||.|||.... .++.. .++.+.|-|.+.+..++++|+..|.+..+-
T Consensus 112 ~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~ 191 (362)
T KOG1013|consen 112 GLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLK 191 (362)
T ss_pred hhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccC
Confidence 346999998874 2 22467889999999999997776 33322 277789999999999999999998888774
Q ss_pred cccCCccceEEEEeecC--CCC---CCCCCeEEEecCC
Q psy16327 219 AHYNGKCEHLEITLDLM--NDS---RVSPPLMSVEMPP 251 (994)
Q Consensus 219 ~~~~~~~~~~~~~l~L~--~~~---~~~~G~l~v~~~~ 251 (994)
.. .++....++...|. ... ....|++.+++.+
T Consensus 192 p~-q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~ 228 (362)
T KOG1013|consen 192 PL-QRKSFNICLEKSLPSERADRDEDEERGAILISLAY 228 (362)
T ss_pred hh-hcchhhhhhhccCCcccccccchhhccceeeeecc
Confidence 43 23443433333333 111 1346777777654
No 168
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=91.04 E-value=0.1 Score=46.82 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=50.9
Q ss_pred CCeEE--EeeccCCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327 151 NPYIE--LYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGV 217 (994)
Q Consensus 151 dPyv~--v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~ 217 (994)
.-|++ +++..--..||++.....||+++|+|.|.+.- ...|.|.|+.+ .++...||.+.+.+.++
T Consensus 22 ~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~--~~RKe~iG~~sL~l~s~ 92 (103)
T cd08684 22 TIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ--TPRKRTIGECSLSLRTL 92 (103)
T ss_pred eeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc--CCccceeeEEEeecccC
Confidence 34543 55543336899999999999999999997763 34899999994 67788999999988766
No 169
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=88.84 E-value=1 Score=45.80 Aligned_cols=69 Identities=19% Similarity=0.292 Sum_probs=47.9
Q ss_pred CCCCeEEEee--ccCC---ceeeeeecCCCCCCcceEEEEEec-----CCCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327 149 KPNPYIELYV--DYKN---PKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLDHRTFRRDCTIGEKRLNIYGV 217 (994)
Q Consensus 149 ~~dPyv~v~~--~g~~---~~kT~v~k~tlnP~Wne~f~~~v~-----~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~ 217 (994)
.+|=||.+.| +|+. ...|+.+.-+..+.|||.++|.+. -.+.|+|.|||.+.-++...||.++++|-+.
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 3566776654 4432 234544444556899999999765 2569999999987655667899998888654
No 170
>KOG1327|consensus
Probab=84.88 E-value=2 Score=50.97 Aligned_cols=84 Identities=12% Similarity=0.197 Sum_probs=61.0
Q ss_pred ceeeeeecCCCCCCcceEEEEEec--CCCeEEEEEecCCC----CCCCcccceEEeehhhhhcccCCccceEEEEeecCC
Q psy16327 163 PKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRT----FRRDCTIGEKRLNIYGVLAHYNGKCEHLEITLDLMN 236 (994)
Q Consensus 163 ~~kT~v~k~tlnP~Wne~f~~~v~--~~~~l~~~V~D~d~----~~~d~~lG~~~i~l~~~~~~~~~~~~~~~~~l~L~~ 236 (994)
..+|.++.+.+||.|-+.|.+... ....|.|.|+|-+. +...||||++...+++++...... ..+.++.
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~-----~~l~~~~ 116 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLT-----GPLLLKP 116 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhh-----hhhhccc
Confidence 458999999999999998888443 45689999999765 455699999999999998653211 2233333
Q ss_pred CCCCCCCeEEEecCC
Q psy16327 237 DSRVSPPLMSVEMPP 251 (994)
Q Consensus 237 ~~~~~~G~l~v~~~~ 251 (994)
......|.|.+....
T Consensus 117 ~~~~~~g~iti~aee 131 (529)
T KOG1327|consen 117 GKNAGSGTITISAEE 131 (529)
T ss_pred CccCCcccEEEEeec
Confidence 344567888887754
No 171
>KOG1924|consensus
Probab=83.36 E-value=3.8 Score=50.07 Aligned_cols=12 Identities=25% Similarity=0.620 Sum_probs=8.3
Q ss_pred HHHHHhhccccC
Q psy16327 68 KAFLDGFNEVVP 79 (994)
Q Consensus 68 ~af~~Gf~~v~p 79 (994)
+++|.|+++++|
T Consensus 331 E~mr~gL~~~l~ 342 (1102)
T KOG1924|consen 331 EFMRDGLHKYLP 342 (1102)
T ss_pred HHHHHhHHHHHH
Confidence 566777777765
No 172
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=83.12 E-value=7 Score=39.46 Aligned_cols=94 Identities=19% Similarity=0.253 Sum_probs=72.9
Q ss_pred EEEeeccCCceeeeeecCCCCCCcceEEEEEecCC---------------CeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327 154 IELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPY---------------SIILFRLLDHRTFRRDCTIGEKRLNIYGVL 218 (994)
Q Consensus 154 v~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~---------------~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~ 218 (994)
+.+.+ +.|.++|+-+.-+.+|.++|.|-|.+... ..|++.|.--|+.....++|+-.++=..++
T Consensus 38 l~l~f-~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL 116 (156)
T PF15627_consen 38 LHLHF-RGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVL 116 (156)
T ss_pred EEEEe-cCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHh
Confidence 44555 44699999999999999999999976532 378888999888877789999999999999
Q ss_pred cccCCccceEEEEeecCCCC---CCCCCeEEEecCC
Q psy16327 219 AHYNGKCEHLEITLDLMNDS---RVSPPLMSVEMPP 251 (994)
Q Consensus 219 ~~~~~~~~~~~~~l~L~~~~---~~~~G~l~v~~~~ 251 (994)
...++.. .++++|.+.+ +...|.|.|.++.
T Consensus 117 ~s~~~~~---~~~vEL~G~~~e~kv~~GiL~l~lEL 149 (156)
T PF15627_consen 117 CSGNGST---SFTVELCGVGPESKVPVGILDLRLEL 149 (156)
T ss_pred ccCCCcc---ceeEEEeccCCCCccceeEEEEEEEe
Confidence 9877643 3566776544 4578987777754
No 173
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=81.06 E-value=3.9 Score=37.27 Aligned_cols=64 Identities=13% Similarity=0.060 Sum_probs=50.3
Q ss_pred CCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327 150 PNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGV 217 (994)
Q Consensus 150 ~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~ 217 (994)
.+-.+++++|+.....|.-... .+..||+.|++.+..+..|+|.||=+|- ..+=|.+-++|+|.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdRsRELEI~VywrD~---RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELERSRELEIAVYWRDW---RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeecccccc-ccccccceeEEEeecccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence 4567889998765666654333 4899999999999999999999998753 35678888899884
No 174
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=79.83 E-value=2.4 Score=42.15 Aligned_cols=53 Identities=21% Similarity=0.370 Sum_probs=39.9
Q ss_pred eeeeecCC-CCCCcceEEEEEec-----CCCeEEEEEecCCCCCCC----cccceEEeehhhh
Q psy16327 165 TTRVVKNT-YQPKWNEEFTVLVS-----PYSIILFRLLDHRTFRRD----CTIGEKRLNIYGV 217 (994)
Q Consensus 165 kT~v~k~t-lnP~Wne~f~~~v~-----~~~~l~~~V~D~d~~~~d----~~lG~~~i~l~~~ 217 (994)
.|+++.-+ .++.|||.++|.+. ..+.|+|.||+.+.-.++ ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 56555555 79999999999654 356999999998776655 6899999998776
No 175
>KOG1924|consensus
Probab=77.94 E-value=11 Score=46.23 Aligned_cols=12 Identities=0% Similarity=-0.050 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q psy16327 802 LYFKFIGRFIAM 813 (994)
Q Consensus 802 ~~f~fiGrlig~ 813 (994)
+.|.-+|.+.+.
T Consensus 943 eq~~~ls~M~~~ 954 (1102)
T KOG1924|consen 943 EQYSKLSSMHGN 954 (1102)
T ss_pred HHHHHHHHHHHH
Confidence 344555555444
No 176
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=77.89 E-value=4.1 Score=41.10 Aligned_cols=53 Identities=13% Similarity=0.205 Sum_probs=39.2
Q ss_pred eeeeecCCCCCCcceEEEEEec-----CCCeEEEEEecCCCCC--CCcccceEEeehhhh
Q psy16327 165 TTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLDHRTFR--RDCTIGEKRLNIYGV 217 (994)
Q Consensus 165 kT~v~k~tlnP~Wne~f~~~v~-----~~~~l~~~V~D~d~~~--~d~~lG~~~i~l~~~ 217 (994)
.|.+.....++.|||.++|.+. ..+.|.|.||+.+.-+ ++..||.++++|-+.
T Consensus 48 ~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 48 STKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred eccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 4444444468999999999553 3569999999986554 467899999888664
No 177
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=75.63 E-value=6 Score=40.80 Aligned_cols=37 Identities=19% Similarity=0.365 Sum_probs=27.1
Q ss_pred eeeeeecCCCCCCcceEEEEEec-----CCCeEEEEEecCCC
Q psy16327 164 KTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLDHRT 200 (994)
Q Consensus 164 ~kT~v~k~tlnP~Wne~f~~~v~-----~~~~l~~~V~D~d~ 200 (994)
..|+.+.-.-.+.|||.++|.+. ..+.|+|.||+...
T Consensus 46 ~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~ 87 (173)
T cd08693 46 VKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSK 87 (173)
T ss_pred eEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecc
Confidence 35555554457999999999654 24699999999754
No 178
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=72.95 E-value=22 Score=34.93 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=48.7
Q ss_pred CCCCcceEEEEEec----C------CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCccceEEEEeecCCCCCCCC
Q psy16327 173 YQPKWNEEFTVLVS----P------YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCEHLEITLDLMNDSRVSP 242 (994)
Q Consensus 173 lnP~Wne~f~~~v~----~------~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~~~~~~~l~L~~~~~~~~ 242 (994)
-.=.|||.|.+.++ . ...+.|.|+....-++...||.+.|+|+++.... .......+.|+.. ....
T Consensus 50 ~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~---~~~~~~~~~l~~~-~~~~ 125 (143)
T PF10358_consen 50 GKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANED---EEPITVRLLLKKC-KKSN 125 (143)
T ss_pred cEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcC---CCcEEEEEeCccC-CCCC
Confidence 34689999998554 1 1278899998743223369999999999998763 1233455666654 3334
Q ss_pred CeEEEecCC
Q psy16327 243 PLMSVEMPP 251 (994)
Q Consensus 243 G~l~v~~~~ 251 (994)
-.|.|.+..
T Consensus 126 a~L~isi~~ 134 (143)
T PF10358_consen 126 ATLSISISL 134 (143)
T ss_pred cEEEEEEEE
Confidence 456665543
No 179
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=72.80 E-value=7 Score=39.71 Aligned_cols=67 Identities=13% Similarity=0.262 Sum_probs=42.5
Q ss_pred CCCeEEEee--ccCC---ceeeeeecCCCCCCcceEEEEEec-----CCCeEEEEEecCCCCC----CCcccceEEeehh
Q psy16327 150 PNPYIELYV--DYKN---PKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLDHRTFR----RDCTIGEKRLNIY 215 (994)
Q Consensus 150 ~dPyv~v~~--~g~~---~~kT~v~k~tlnP~Wne~f~~~v~-----~~~~l~~~V~D~d~~~----~d~~lG~~~i~l~ 215 (994)
+|=||.+.| +++. ...|+.+.- .++.|||.++|.+. ..+.|+|.||+...-+ +...||.+++.|-
T Consensus 26 ~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LF 104 (158)
T cd08398 26 DKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLF 104 (158)
T ss_pred CeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEE
Confidence 355666544 4432 223443333 57999999999665 2569999999975422 1245888888876
Q ss_pred hh
Q psy16327 216 GV 217 (994)
Q Consensus 216 ~~ 217 (994)
+.
T Consensus 105 d~ 106 (158)
T cd08398 105 DY 106 (158)
T ss_pred CC
Confidence 64
No 180
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=71.41 E-value=13 Score=38.59 Aligned_cols=35 Identities=11% Similarity=0.105 Sum_probs=26.2
Q ss_pred eeeeecCCCCCCcceEEEEEec-----CCCeEEEEEecCC
Q psy16327 165 TTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLDHR 199 (994)
Q Consensus 165 kT~v~k~tlnP~Wne~f~~~v~-----~~~~l~~~V~D~d 199 (994)
.|+.+.-+.++.|||.++|.+. ..+.|+|.|||..
T Consensus 49 ~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 49 RTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred eeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 4554444557999999999665 3569999999974
No 181
>KOG3552|consensus
Probab=68.56 E-value=1.6 Score=54.12 Aligned_cols=33 Identities=39% Similarity=0.879 Sum_probs=25.5
Q ss_pred CCCCCCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327 404 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 436 (994)
Q Consensus 404 ~~lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~ 436 (994)
+.++++|++..|..||-||+||..++++.+.|.
T Consensus 18 ~~v~~~~~r~~dsk~r~~y~~~~~~~~~~~~~~ 50 (1298)
T KOG3552|consen 18 EELSYGWERAIDSKGRSYYINHLNKTTTYEAPE 50 (1298)
T ss_pred cccchHHHHhhhcccchhHHhhcCCccCcCCCc
Confidence 467788888888888888888888887776664
No 182
>KOG3552|consensus
Probab=68.09 E-value=2.2 Score=52.97 Aligned_cols=49 Identities=24% Similarity=0.554 Sum_probs=37.4
Q ss_pred cccccCCCCcccccccccCCCCCCCCCCcceeeccCcceeeeccCCCccccCCCCC
Q psy16327 619 RTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRP 674 (994)
Q Consensus 619 ~~t~w~dPr~~~~~~~~~~~~~~~LP~gWe~~~~~~g~~yfv~hn~r~tt~~dPr~ 674 (994)
..+.|-.|+..+. ....|++||+...|..|+.||++|.++++++++|..
T Consensus 3 ~~a~~~p~~~~~~-------~~~~v~~~~~r~~dsk~r~~y~~~~~~~~~~~~~~~ 51 (1298)
T KOG3552|consen 3 QSAGWLPACEDWS-------KHEELSYGWERAIDSKGRSYYINHLNKTTTYEAPEC 51 (1298)
T ss_pred ccccCCCCccccc-------cccccchHHHHhhhcccchhHHhhcCCccCcCCCcc
Confidence 3455666655443 246789999999999999999999888888877654
No 183
>KOG0162|consensus
Probab=67.41 E-value=1.1e+02 Score=37.89 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhccccCcccccCCCHHHHH
Q psy16327 64 EEQTKAFLDGFNEVVPIEWLKYFDERELE 92 (994)
Q Consensus 64 ~~q~~af~~Gf~~v~p~~~L~~f~~~EL~ 92 (994)
+++++-|.+-|.-+-|..| --+.-+|++
T Consensus 626 Rr~F~kF~qRyailsp~t~-~twqGD~~~ 653 (1106)
T KOG0162|consen 626 RRAFDKFAQRYAILSPQTW-PTWQGDEKQ 653 (1106)
T ss_pred HHHHHHHHHHheecCcccc-cccccchHH
Confidence 4566777777765555553 355555555
No 184
>KOG4334|consensus
Probab=66.76 E-value=5.2 Score=46.43 Aligned_cols=34 Identities=35% Similarity=0.672 Sum_probs=31.6
Q ss_pred CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCC
Q psy16327 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 541 (994)
Q Consensus 508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~ 541 (994)
..|||.||.+...-.|-+.|++..||..+|.+|=
T Consensus 152 ~epLPeGW~~i~HnSGmPvylHr~tRVvt~SrPY 185 (650)
T KOG4334|consen 152 SEPLPEGWTVISHNSGMPVYLHRFTRVVTHSRPY 185 (650)
T ss_pred CCcCCCceEEEeecCCCceEEeeeeeeEeccCce
Confidence 4589999999999999999999999999999994
No 185
>KOG0694|consensus
Probab=66.44 E-value=2.6 Score=51.22 Aligned_cols=70 Identities=14% Similarity=0.065 Sum_probs=52.5
Q ss_pred CCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327 149 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVL 218 (994)
Q Consensus 149 ~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~ 218 (994)
..+||+.|.|+-.+...+.+.+++..|.|||+|.+.|.....+.|.|+.......+.+.-.+.+-.++..
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k 96 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAGGAKNIIVLLKSPDPKALSEAQLSLQEESQK 96 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeecCCceEEEEEecCCcchhhHHHhHHHHHHHHH
Confidence 3589988888655555667789999999999999999999999999999865555544444444444443
No 186
>KOG4334|consensus
Probab=64.03 E-value=5.6 Score=46.18 Aligned_cols=36 Identities=36% Similarity=0.691 Sum_probs=32.8
Q ss_pred CCCCCCCCCCceEeecCCCCeeeeeCCCCcccccCC
Q psy16327 368 LPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403 (994)
Q Consensus 368 ~~~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P 403 (994)
.+...|||.||..-....|-..|++..|+..+|.+|
T Consensus 149 l~~~epLPeGW~~i~HnSGmPvylHr~tRVvt~SrP 184 (650)
T KOG4334|consen 149 LDKSEPLPEGWTVISHNSGMPVYLHRFTRVVTHSRP 184 (650)
T ss_pred CCCCCcCCCceEEEeecCCCceEEeeeeeeEeccCc
Confidence 345679999999999999999999999999999999
No 187
>KOG1452|consensus
Probab=63.61 E-value=12 Score=41.23 Aligned_cols=69 Identities=25% Similarity=0.345 Sum_probs=52.9
Q ss_pred CCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCC--cccceEEeehhhhhcc
Q psy16327 150 PNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRD--CTIGEKRLNIYGVLAH 220 (994)
Q Consensus 150 ~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d--~~lG~~~i~l~~~~~~ 220 (994)
-+=|+++.+|-+.+.+|.|....+-=.|.|+|.+.|-...++.+-||.|+--... ..+| -|.+.-|...
T Consensus 74 ~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~~vl~~lvySW~pq~RHKLC~~g--~l~~~~v~rq 144 (442)
T KOG1452|consen 74 VCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNIEVLHYLVYSWPPQRRHKLCHLG--LLEAFVVDRQ 144 (442)
T ss_pred eeeeeeeeecccCccccccccCCCCccchhhceeecccceeeeEEEeecCchhhccccccc--hhhhhhhhhc
Confidence 4789999998777788888877777789999999999999999999999865433 4456 3444445443
No 188
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=62.09 E-value=1.4e+02 Score=34.35 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=43.3
Q ss_pred CceEeecCCCCeeeeeCCCCcccccCCCCC-----C---CCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327 377 GWEIRQDTYGRRYYVDHNTRSSSWERPQPL-----P---PGWELRRDPRGRVYYVDHNTRSTTWQRPN 436 (994)
Q Consensus 377 ~w~~~~~~~G~~yy~n~~t~~t~w~~P~~l-----p---~gW~~~~~~~g~~yy~n~~t~~t~w~~P~ 436 (994)
+.....+.+|.+|-+|..|++--|....+- | .+.--....+|.+|-+|..+++..|+...
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 344445668999999999999999877321 1 22323335588999999999999998764
No 189
>KOG4286|consensus
Probab=62.05 E-value=2.5 Score=51.35 Aligned_cols=29 Identities=34% Similarity=0.850 Sum_probs=27.3
Q ss_pred ceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327 515 WELRRDPRGRVYYVDHNTRSTTWQRPNSE 543 (994)
Q Consensus 515 W~~~~~~~gr~yy~~~~t~~t~w~~P~~~ 543 (994)
|+..+.++--+||+||.|.+|+|++|...
T Consensus 354 w~rais~nkvpyyinh~~q~t~wdhp~~t 382 (966)
T KOG4286|consen 354 WERAISPNKVPYYINHETQTTCWDHPKMT 382 (966)
T ss_pred chhccCccccchhhcccchhhhccchHHH
Confidence 99999999999999999999999999764
No 190
>KOG4286|consensus
Probab=60.96 E-value=3.2 Score=50.48 Aligned_cols=31 Identities=32% Similarity=0.783 Sum_probs=24.9
Q ss_pred CceeeeCCCCCeEEEeCCCCcccccCCchhh
Q psy16327 409 GWELRRDPRGRVYYVDHNTRSTTWQRPNSER 439 (994)
Q Consensus 409 gW~~~~~~~g~~yy~n~~t~~t~w~~P~~~~ 439 (994)
.|++..++.--.||+||.|.+|+|++|..+.
T Consensus 353 pw~rais~nkvpyyinh~~q~t~wdhp~~te 383 (966)
T KOG4286|consen 353 PWERAISPNKVPYYINHETQTTCWDHPKMTE 383 (966)
T ss_pred cchhccCccccchhhcccchhhhccchHHHH
Confidence 4777888877778888888888998887654
No 191
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=60.57 E-value=1.8e+02 Score=33.83 Aligned_cols=59 Identities=14% Similarity=0.252 Sum_probs=43.1
Q ss_pred ceEeecCCCCeeeeeCCCCcccccCCCCC-----C---CCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327 378 WEIRQDTYGRRYYVDHNTRSSSWERPQPL-----P---PGWELRRDPRGRVYYVDHNTRSTTWQRPN 436 (994)
Q Consensus 378 w~~~~~~~G~~yy~n~~t~~t~w~~P~~l-----p---~gW~~~~~~~g~~yy~n~~t~~t~w~~P~ 436 (994)
.....+.+|.+|=+|..|++.-|..+.+- | .+---..+.+|.+|-+|..|++..|..+.
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence 34445568899999999999999887321 1 11112235588999999999999998875
No 192
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=58.45 E-value=30 Score=35.48 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=33.2
Q ss_pred CCCcceEEEEEec-----CCCeEEEEEecCCCCC---------CCcccceEEeehhhh
Q psy16327 174 QPKWNEEFTVLVS-----PYSIILFRLLDHRTFR---------RDCTIGEKRLNIYGV 217 (994)
Q Consensus 174 nP~Wne~f~~~v~-----~~~~l~~~V~D~d~~~---------~d~~lG~~~i~l~~~ 217 (994)
.+.|||.++|.+. -.+.|+|.||+...-+ ++..||.+.++|-+.
T Consensus 62 ~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 62 RVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred cccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 5789999999664 2469999999976544 346788888887664
No 193
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=55.28 E-value=41 Score=31.84 Aligned_cols=88 Identities=14% Similarity=0.063 Sum_probs=43.8
Q ss_pred EEeeccCCceeeeeecCCCCCCcceEEEEEecCC---------CeEEEEEecCCCCCCC-cccceEEeehhhhhcccCCc
Q psy16327 155 ELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPY---------SIILFRLLDHRTFRRD-CTIGEKRLNIYGVLAHYNGK 224 (994)
Q Consensus 155 ~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~---------~~l~~~V~D~d~~~~d-~~lG~~~i~l~~~~~~~~~~ 224 (994)
.+..-.-+...|.++. .++|..|.+-.+.|+.+ ..+.++++.-- +.| ..||.+.|++.+++......
T Consensus 4 t~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~--g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 4 TYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL--GSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE---SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec--cCCeEEEEEEEeechhhhcCCCce
Confidence 3333344467788887 67999999999888753 47888888753 344 78999999999999654322
Q ss_pred cceEEEEeecCCCCCCCCCeEEEe
Q psy16327 225 CEHLEITLDLMNDSRVSPPLMSVE 248 (994)
Q Consensus 225 ~~~~~~~l~L~~~~~~~~G~l~v~ 248 (994)
+.-++.|.+.++...|.|...
T Consensus 81 ---i~~~~~l~g~~~~~~g~l~y~ 101 (107)
T PF11618_consen 81 ---IHGSATLVGVSGEDFGTLEYW 101 (107)
T ss_dssp ---EEEEEEE-BSSS-TSEEEEEE
T ss_pred ---EEEEEEEeccCCCeEEEEEEE
Confidence 334556666555577755443
No 194
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=53.29 E-value=16 Score=37.97 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=32.8
Q ss_pred ceeeeeecCCCCCCcceEEEEEec----CCCeEEEEEecCCCCCCC---cccceEEeehhh
Q psy16327 163 PKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTFRRD---CTIGEKRLNIYG 216 (994)
Q Consensus 163 ~~kT~v~k~tlnP~Wne~f~~~v~----~~~~l~~~V~D~d~~~~d---~~lG~~~i~l~~ 216 (994)
..+|.|...+-+|.|+|+|.+.+- +...|.|.+++...-.+. ..+|-+-++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 567888888889999999999553 456999999996543222 588999988866
No 195
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=50.15 E-value=33 Score=35.14 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=51.8
Q ss_pred CCCCCCeEEEeeccCCceeeeeecC--CCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKN--TYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGV 217 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~--tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~ 217 (994)
-.+.-=|++|.+||+...+|+...- ..-=.+||.|.+.+.. -..|.++||.... ..+.+|+++.|+|-..
T Consensus 34 ~~~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~ 106 (168)
T PF15625_consen 34 VQKTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGS 106 (168)
T ss_pred hhheeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCC
Confidence 3445568999999987777764433 2234568999997754 4689999999977 6778999999887654
No 196
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=45.16 E-value=38 Score=34.94 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=36.3
Q ss_pred eeeecCCCCCCcceEEEEEe----cCCCeEEEEEecCCCCC-----CCcccceEEeehhh
Q psy16327 166 TRVVKNTYQPKWNEEFTVLV----SPYSIILFRLLDHRTFR-----RDCTIGEKRLNIYG 216 (994)
Q Consensus 166 T~v~k~tlnP~Wne~f~~~v----~~~~~l~~~V~D~d~~~-----~d~~lG~~~i~l~~ 216 (994)
|+++...-+|.|||+|.+.+ .+...|.|.+++...-. ....+|-+-++|-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 44444448999999999955 34679999999965332 24677888877754
No 197
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=40.50 E-value=43 Score=31.11 Aligned_cols=50 Identities=20% Similarity=0.267 Sum_probs=32.5
Q ss_pred CCCeEEEee--ccCC---ceeeeeecCCCCCCcceEEEEEec-----CCCeEEEEEecCC
Q psy16327 150 PNPYIELYV--DYKN---PKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLDHR 199 (994)
Q Consensus 150 ~dPyv~v~~--~g~~---~~kT~v~k~tlnP~Wne~f~~~v~-----~~~~l~~~V~D~d 199 (994)
+|=||.+.+ +|+. ...|+.+.-...+.|||.++|.+. ..+.|.|.||+..
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 366676654 4432 234544443445899999998654 2469999999964
No 198
>KOG1265|consensus
Probab=38.94 E-value=26 Score=43.96 Aligned_cols=66 Identities=24% Similarity=0.382 Sum_probs=46.2
Q ss_pred CCCCeEEEeeccC------Cceeeee-ecCCCCCCcceE-EEE--EecC-CCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327 149 KPNPYIELYVDYK------NPKTTRV-VKNTYQPKWNEE-FTV--LVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGV 217 (994)
Q Consensus 149 ~~dPyv~v~~~g~------~~~kT~v-~k~tlnP~Wne~-f~~--~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~ 217 (994)
+.--||+|.+-|. ..++|++ ..+.+||+|||+ |.| .|-| -..|.|-||+. ...|||.-.++|.-+
T Consensus 719 kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE----ggK~ig~RIlpvd~l 794 (1189)
T KOG1265|consen 719 KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE----GGKFIGQRILPVDGL 794 (1189)
T ss_pred ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc----CCceeeeeccchhcc
Confidence 3446777776552 1345654 467789999965 444 4444 57999999998 456999999988766
Q ss_pred h
Q psy16327 218 L 218 (994)
Q Consensus 218 ~ 218 (994)
-
T Consensus 795 ~ 795 (1189)
T KOG1265|consen 795 N 795 (1189)
T ss_pred c
Confidence 3
No 199
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=37.27 E-value=3.8e+02 Score=31.11 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=39.7
Q ss_pred ecCCCCeeeeeCCCCcccccCCCCCCC-------------CceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327 382 QDTYGRRYYVDHNTRSSSWERPQPLPP-------------GWELRRDPRGRVYYVDHNTRSTTWQRPN 436 (994)
Q Consensus 382 ~~~~G~~yy~n~~t~~t~w~~P~~lp~-------------gW~~~~~~~g~~yy~n~~t~~t~w~~P~ 436 (994)
.+.+|.+|-+|..|++.-|..+...|. +---....+|++|.+|..+++..|+.+.
T Consensus 166 ~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~ 233 (394)
T PRK11138 166 HTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRI 233 (394)
T ss_pred ECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheecc
Confidence 356889999999999999988743221 1111224478889999999999998653
No 200
>KOG2419|consensus
Probab=36.12 E-value=11 Score=45.26 Aligned_cols=57 Identities=14% Similarity=0.055 Sum_probs=42.3
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC---CCeEEEEEecCCCCCCCc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP---YSIILFRLLDHRTFRRDC 205 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~---~~~l~~~V~D~d~~~~d~ 205 (994)
.++.+|++.+.+ |++..+|+....+++|.|||. .+.+.. ...|.++|.+++++.-+|
T Consensus 302 ~f~~~~~~itsf-~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~~~lnd 361 (975)
T KOG2419|consen 302 LFKDKWLAITSF-GEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYCELDLND 361 (975)
T ss_pred ccCCCchheeec-chhhhhhhhhccccccccccc-ccccccchhhHHHhhhccccccccccc
Confidence 467889999999 677999999999999999997 554443 225666666666654443
No 201
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=33.47 E-value=6.2e+02 Score=28.90 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=40.5
Q ss_pred eecCCCCeeeeeCCCCcccccCCCCC-----C---CCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327 381 RQDTYGRRYYVDHNTRSSSWERPQPL-----P---PGWELRRDPRGRVYYVDHNTRSTTWQRPN 436 (994)
Q Consensus 381 ~~~~~G~~yy~n~~t~~t~w~~P~~l-----p---~gW~~~~~~~g~~yy~n~~t~~t~w~~P~ 436 (994)
..+.+|.+|=+|..|++.-|....+- | .+.--..+.+|.+|-+|..|++-.|....
T Consensus 70 v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 133 (377)
T TIGR03300 70 AADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKL 133 (377)
T ss_pred EECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeecc
Confidence 34567899999999999999866221 1 12222335688999999999999998764
No 202
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=33.07 E-value=7.4e+02 Score=27.75 Aligned_cols=21 Identities=10% Similarity=0.370 Sum_probs=17.2
Q ss_pred CCCcceeeccCcceeeeccCC
Q psy16327 644 PPGWEIRYTEDGTRYFVDHNT 664 (994)
Q Consensus 644 P~gWe~~~~~~g~~yfv~hn~ 664 (994)
|.++.++.|..|++++-+..+
T Consensus 276 arpys~rVD~~grVW~sea~a 296 (353)
T COG4257 276 ARPYSMRVDRHGRVWLSEADA 296 (353)
T ss_pred CCcceeeeccCCcEEeecccc
Confidence 467899999999999876654
No 203
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=32.85 E-value=93 Score=32.60 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=37.5
Q ss_pred ceeeeeecCCCCCCcceEEEEEec----CCCeEEEEEecCCCCC-CC-cccceEEeehh
Q psy16327 163 PKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTFR-RD-CTIGEKRLNIY 215 (994)
Q Consensus 163 ~~kT~v~k~tlnP~Wne~f~~~v~----~~~~l~~~V~D~d~~~-~d-~~lG~~~i~l~ 215 (994)
..+|.|..-+-+|.|||++.+.+- ++..|.|.++....-. ++ ..+|-+-++|-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 468888888889999999999665 4568888776643221 11 45777777763
No 204
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=28.79 E-value=1.3e+02 Score=31.82 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=37.7
Q ss_pred ceeeeeecCCCCCCcceEEEEEec----CCCeEEEEEecCCCCC-CC---cccceEEeehh
Q psy16327 163 PKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTFR-RD---CTIGEKRLNIY 215 (994)
Q Consensus 163 ~~kT~v~k~tlnP~Wne~f~~~v~----~~~~l~~~V~D~d~~~-~d---~~lG~~~i~l~ 215 (994)
..+|.|..-.-+|.|||++.+.+- +...|.|.++-...-. +| ..+|-+-++|-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 578888888889999999999664 4578999986643221 22 45677777764
No 205
>KOG0150|consensus
Probab=27.31 E-value=34 Score=37.91 Aligned_cols=28 Identities=29% Similarity=0.720 Sum_probs=22.7
Q ss_pred CceEeecCCCCeeeeeCCCCcccccCCC
Q psy16327 377 GWEIRQDTYGRRYYVDHNTRSSSWERPQ 404 (994)
Q Consensus 377 ~w~~~~~~~G~~yy~n~~t~~t~w~~P~ 404 (994)
-|++.+.++|-+||+|..|+.+-|..|.
T Consensus 152 ~wv~~Knes~~~yy~n~~t~esvwk~P~ 179 (336)
T KOG0150|consen 152 EWVEGKNESGPTYYSNKRTNESVWKPPR 179 (336)
T ss_pred hcccccCCCCCCcceecCCCccccCCCC
Confidence 4888888888888888888888888774
No 206
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=26.57 E-value=63 Score=28.69 Aligned_cols=24 Identities=33% Similarity=0.732 Sum_probs=17.7
Q ss_pred CCCCCceEEeC--------CCCCeEEEeCCCC
Q psy16327 510 PLPPGWELRRD--------PRGRVYYVDHNTR 533 (994)
Q Consensus 510 ~lp~gW~~~~~--------~~gr~yy~~~~t~ 533 (994)
|||.||+..+. ..+.+||+.+.-+
T Consensus 7 Plp~GW~R~~~~r~~g~~~~~~dV~Y~sP~Gk 38 (77)
T smart00391 7 PLPCGWRRETKQRKSGRSAGKFDVYYISPCGK 38 (77)
T ss_pred CCCCCcEEEEEEecCCCCCCcccEEEECCCCC
Confidence 69999977553 2478999977544
No 207
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=26.43 E-value=1.4e+02 Score=35.84 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=8.1
Q ss_pred hCCCCCCccccCCCCc
Q psy16327 771 LNPMYCLFEYANKNNY 786 (994)
Q Consensus 771 ~~p~~~lF~~~~~~~~ 786 (994)
++.++..|.+...+.|
T Consensus 421 LnsDLnpfK~~Ss~~Y 436 (574)
T PF07462_consen 421 LNSDLNPFKYSSSGEY 436 (574)
T ss_pred HhhhccccccCCCCCe
Confidence 3444455555555444
No 208
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=26.28 E-value=82 Score=27.98 Aligned_cols=24 Identities=38% Similarity=0.858 Sum_probs=16.8
Q ss_pred CCCCCceEEeCC-------CCCeEEEeCCCC
Q psy16327 510 PLPPGWELRRDP-------RGRVYYVDHNTR 533 (994)
Q Consensus 510 ~lp~gW~~~~~~-------~gr~yy~~~~t~ 533 (994)
.||+||...+-. .+.+||+.+..+
T Consensus 6 ~lp~GW~r~~~~R~~gs~~k~DvyY~sP~Gk 36 (77)
T cd01396 6 RLPPGWKRELVPRKSGSAGKFDVYYISPTGK 36 (77)
T ss_pred CCCCCCEEEEEEecCCCCCcceEEEECCCCC
Confidence 599999765422 246999988754
No 209
>KOG1923|consensus
Probab=26.11 E-value=1.9e+02 Score=36.26 Aligned_cols=14 Identities=21% Similarity=-0.211 Sum_probs=5.1
Q ss_pred CCCCceEeecCCCC
Q psy16327 374 LPPGWEIRQDTYGR 387 (994)
Q Consensus 374 lp~~w~~~~~~~G~ 387 (994)
|+.+-+....+.++
T Consensus 336 l~~~~espvpp~~~ 349 (830)
T KOG1923|consen 336 LLTFPESPVPPPQR 349 (830)
T ss_pred ccCCCCCCCCCCcc
Confidence 33333333333333
No 210
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=25.54 E-value=1.2e+02 Score=31.58 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=37.6
Q ss_pred ceeeeeecCCCCCCcceEEEEEe----cCCCeEEEEEecCCCCCC------CcccceEEeehh
Q psy16327 163 PKTTRVVKNTYQPKWNEEFTVLV----SPYSIILFRLLDHRTFRR------DCTIGEKRLNIY 215 (994)
Q Consensus 163 ~~kT~v~k~tlnP~Wne~f~~~v----~~~~~l~~~V~D~d~~~~------d~~lG~~~i~l~ 215 (994)
..+|.|...+-+|.|+|++.+.+ .+...|.|+.++-+.-.+ ...+|-+-++|-
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 46788888888999999999854 456799999998443221 134666666664
No 211
>KOG0150|consensus
Probab=22.55 E-value=62 Score=35.95 Aligned_cols=30 Identities=23% Similarity=0.668 Sum_probs=26.7
Q ss_pred CCceeeeCCCCCeEEEeCCCCcccccCCch
Q psy16327 408 PGWELRRDPRGRVYYVDHNTRSTTWQRPNS 437 (994)
Q Consensus 408 ~gW~~~~~~~g~~yy~n~~t~~t~w~~P~~ 437 (994)
--|-+...++|..||+|..|+++.|..|..
T Consensus 151 k~wv~~Knes~~~yy~n~~t~esvwk~P~~ 180 (336)
T KOG0150|consen 151 KEWVEGKNESGPTYYSNKRTNESVWKPPRI 180 (336)
T ss_pred hhcccccCCCCCCcceecCCCccccCCCCc
Confidence 348888899999999999999999999973
No 212
>KOG1329|consensus
Probab=21.53 E-value=56 Score=41.40 Aligned_cols=71 Identities=13% Similarity=0.237 Sum_probs=60.0
Q ss_pred CCCeEEEeeccCCceeeeeecCC-CCCCcceEEEEEec-CCCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327 150 PNPYIELYVDYKNPKTTRVVKNT-YQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 150 ~dPyv~v~~~g~~~~kT~v~k~t-lnP~Wne~f~~~v~-~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~ 220 (994)
.++|+.+.+......+|.++.+. .+|.|.+.|++... ....+.++|-+.+-++.-.++|.++++.-.++..
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~ 210 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSG 210 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcc
Confidence 69999999977767889988888 49999999998554 5679999999998887456999999999888774
No 213
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=21.36 E-value=86 Score=26.42 Aligned_cols=25 Identities=40% Similarity=0.884 Sum_probs=17.9
Q ss_pred CCCCCCceEEeCC-------CCCeEEEeCCCC
Q psy16327 509 QPLPPGWELRRDP-------RGRVYYVDHNTR 533 (994)
Q Consensus 509 ~~lp~gW~~~~~~-------~gr~yy~~~~t~ 533 (994)
.|||.||...... .+.+||+.+..+
T Consensus 4 ~P~p~GW~R~~~~r~~g~~~k~dv~Y~sP~Gk 35 (62)
T cd00122 4 DPLPPGWKRELVIRKSGSAGKGDVYYYSPCGK 35 (62)
T ss_pred CCCCCCeEEEEEEcCCCCCCcceEEEECCCCc
Confidence 3789999775532 357999987654
No 214
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=20.55 E-value=2e+02 Score=34.63 Aligned_cols=11 Identities=9% Similarity=0.223 Sum_probs=4.9
Q ss_pred cCCCHHHHHHH
Q psy16327 84 KYFDERELELI 94 (994)
Q Consensus 84 ~~f~~~EL~~l 94 (994)
.-+++++...|
T Consensus 49 ~~m~~~~~~~L 59 (574)
T PF07462_consen 49 NKMTEEKWNAL 59 (574)
T ss_pred hcCCHHHHHHH
Confidence 33445544443
No 215
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=20.25 E-value=94 Score=27.58 Aligned_cols=12 Identities=42% Similarity=0.916 Sum_probs=7.4
Q ss_pred CCCCCCceEeec
Q psy16327 372 EPLPPGWEIRQD 383 (994)
Q Consensus 372 ~~lp~~w~~~~~ 383 (994)
.|||.||.....
T Consensus 6 ~Plp~GW~R~~~ 17 (77)
T smart00391 6 LPLPCGWRRETK 17 (77)
T ss_pred CCCCCCcEEEEE
Confidence 457777766543
Done!