Query psy16327
Match_columns 994
No_of_seqs 816 out of 3917
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 18:34:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3olm_A E3 ubiquitin-protein li 100.0 6.2E-83 2.1E-87 735.3 26.6 348 639-994 5-429 (429)
2 1zvd_A SMAD ubiquitination reg 100.0 1.7E-70 5.9E-75 623.9 23.5 301 691-994 1-380 (380)
3 1nd7_A WW domain-containing pr 100.0 5.2E-70 1.8E-74 619.4 23.3 297 691-989 1-374 (374)
4 3h1d_A E3 ubiquitin-protein li 100.0 5.7E-69 1.9E-73 612.6 23.2 301 691-993 22-404 (405)
5 2oni_A E3 ubiquitin-protein li 100.0 2.7E-67 9.2E-72 599.3 22.5 299 685-987 13-392 (392)
6 1c4z_A E6AP, ubiquitin-protein 100.0 1.4E-61 4.7E-66 546.7 20.5 270 711-993 3-357 (358)
7 1zvd_A SMAD ubiquitination reg 99.9 3.1E-24 1.1E-28 243.9 5.3 124 4-144 184-312 (380)
8 1nd7_A WW domain-containing pr 99.9 4.8E-24 1.6E-28 242.2 3.0 123 5-144 185-312 (374)
9 3h1d_A E3 ubiquitin-protein li 99.9 2.3E-24 8E-29 245.6 -0.3 121 7-144 211-336 (405)
10 2oni_A E3 ubiquitin-protein li 99.9 1E-23 3.4E-28 240.5 2.5 124 4-144 203-332 (392)
11 3olm_A E3 ubiquitin-protein li 99.9 1.4E-23 4.8E-28 241.7 2.9 125 3-144 233-362 (429)
12 1c4z_A E6AP, ubiquitin-protein 99.9 2.3E-23 7.8E-28 235.0 2.3 122 6-144 169-297 (358)
13 1tk7_A CG4244-PB; WW domain, n 99.8 5.7E-20 1.9E-24 165.3 6.5 83 590-674 6-88 (88)
14 2kxq_A E3 ubiquitin-protein li 99.8 3.8E-19 1.3E-23 160.6 9.7 82 508-629 7-88 (90)
15 2kxq_A E3 ubiquitin-protein li 99.8 5.9E-19 2E-23 159.3 8.7 81 595-675 8-88 (90)
16 1tk7_A CG4244-PB; WW domain, n 99.8 8.7E-19 3E-23 157.5 7.3 67 370-436 9-87 (88)
17 3pt3_A E3 ubiquitin-protein li 99.7 1.1E-17 3.7E-22 157.5 4.9 61 923-993 55-117 (118)
18 2l5f_A PRE-mRNA-processing fac 99.7 9.1E-17 3.1E-21 145.5 7.6 68 370-437 8-84 (92)
19 2nq3_A Itchy homolog E3 ubiqui 99.7 1.6E-16 5.6E-21 161.8 9.4 105 147-252 54-160 (173)
20 1o6w_A PRP40, PRE-mRNA process 99.6 3.4E-16 1.2E-20 136.7 4.4 61 376-436 2-71 (75)
21 2fk9_A Protein kinase C, ETA t 99.6 2.8E-15 9.7E-20 149.7 8.6 96 148-250 58-154 (157)
22 2jxw_A WW domain-binding prote 99.6 3.9E-15 1.3E-19 129.7 6.8 62 375-436 4-74 (75)
23 3pyc_A E3 ubiquitin-protein li 99.5 1.2E-14 4.1E-19 140.9 10.0 102 147-250 23-130 (132)
24 1o6w_A PRP40, PRE-mRNA process 99.5 4.3E-15 1.5E-19 129.6 4.2 72 513-629 2-73 (75)
25 1gmi_A Protein kinase C, epsil 99.5 1.8E-14 6.2E-19 140.5 7.6 95 149-251 37-131 (136)
26 3b7y_A E3 ubiquitin-protein li 99.5 4.5E-14 1.5E-18 140.4 10.2 105 147-251 38-151 (153)
27 2l5f_A PRE-mRNA-processing fac 99.5 1.2E-14 4.1E-19 131.6 5.4 76 509-629 10-85 (92)
28 2dmh_A Myoferlin; beta-sandwic 99.5 4.9E-14 1.7E-18 137.9 10.0 101 148-252 25-132 (140)
29 2ep6_A MCTP2 protein; beta san 99.5 3.3E-14 1.1E-18 138.0 8.4 99 147-251 31-130 (133)
30 1wfj_A Putative elicitor-respo 99.5 4.9E-14 1.7E-18 137.2 9.0 100 147-252 28-129 (136)
31 3kwu_A MUNC13-1; calcium bindi 99.5 1E-13 3.4E-18 137.1 10.7 99 147-251 35-145 (148)
32 3m7f_B E3 ubiquitin-protein li 99.5 1.1E-13 3.8E-18 141.1 9.3 107 147-253 26-141 (176)
33 1rlw_A Phospholipase A2, CALB 99.4 2.1E-13 7.3E-18 130.7 9.2 94 147-249 24-121 (126)
34 3l9b_A Otoferlin; C2-domain, b 99.4 1.2E-13 4.2E-18 133.1 6.1 103 148-256 35-143 (144)
35 2jxw_A WW domain-binding prote 99.4 3.4E-13 1.2E-17 117.4 8.1 71 407-541 4-74 (75)
36 1wfm_A Synaptotagmin XIII; C2 99.4 3.5E-13 1.2E-17 131.8 7.3 72 147-218 41-119 (138)
37 2b3r_A Phosphatidylinositol-4- 99.3 2.7E-12 9.4E-17 124.8 9.4 73 147-219 37-118 (134)
38 2d8k_A Synaptotagmin VII; exoc 99.3 3E-12 1E-16 125.4 9.6 84 147-233 44-134 (141)
39 2z0u_A WW domain-containing pr 99.3 7.4E-13 2.5E-17 132.3 4.7 72 147-218 61-141 (155)
40 2cjt_A UNC-13 homolog A, MUNC1 99.3 1.7E-12 5.8E-17 125.9 7.0 71 147-221 20-92 (131)
41 2enp_A B/K protein; C2 type 1, 99.3 2.6E-12 8.9E-17 126.8 8.2 73 147-219 51-129 (147)
42 1a25_A CALB, protein kinase C 99.3 3.1E-12 1.1E-16 126.6 8.8 74 147-220 49-129 (149)
43 3f04_A Synaptotagmin-1; C2A, c 99.3 2.2E-12 7.5E-17 126.6 7.7 73 147-219 52-130 (143)
44 1v27_A Regulating synaptic mem 99.3 5.1E-12 1.7E-16 123.5 9.1 73 147-219 39-122 (141)
45 1ugk_A Synaptotagmin IV, KIAA1 99.3 3.3E-12 1.1E-16 124.6 7.7 85 148-236 42-133 (138)
46 2chd_A Rabphilin-3A, exophilin 99.3 2.4E-12 8.3E-17 126.1 6.6 74 147-220 47-129 (142)
47 1rsy_A Synaptotagmin I; calciu 99.3 6.1E-12 2.1E-16 124.9 9.1 73 147-219 60-138 (152)
48 2bwq_A Regulating synaptic mem 99.3 2.6E-12 8.8E-17 123.7 6.1 82 147-232 36-128 (129)
49 3rdl_A Protein kinase C alpha 99.3 5.8E-12 2E-16 122.4 8.4 74 147-220 34-114 (137)
50 3l4h_A E3 ubiquitin-protein li 99.3 1.9E-13 6.6E-18 124.7 -2.0 62 596-676 45-106 (109)
51 3fdw_A Synaptotagmin-like prot 99.3 3.7E-12 1.3E-16 125.9 6.8 74 147-220 42-123 (148)
52 2ysd_A Membrane-associated gua 99.3 7.8E-12 2.7E-16 101.8 7.0 50 590-646 8-57 (57)
53 3fbk_A RGS3, RGP3, regulator o 99.2 6.5E-12 2.2E-16 124.9 7.5 73 147-219 44-124 (153)
54 1rh8_A Piccolo protein; beta-s 99.2 3.2E-12 1.1E-16 125.2 4.8 84 147-233 36-137 (142)
55 2cm5_A Rabphilin-3A; protein t 99.2 8.4E-12 2.9E-16 125.8 8.1 71 147-217 55-133 (166)
56 2q3x_A Regulating synaptic mem 99.2 5.7E-12 1.9E-16 127.8 6.7 73 147-219 49-127 (171)
57 2dwv_A Salvador homolog 1 prot 99.2 5.1E-12 1.7E-16 99.8 4.5 46 619-675 1-46 (49)
58 2dmg_A KIAA1228 protein; beta- 99.2 6.4E-12 2.2E-16 123.1 5.9 87 150-241 44-140 (142)
59 2cjs_A UNC-13 homolog A, MUNC1 99.2 1.2E-11 4E-16 125.0 6.6 71 147-221 29-101 (167)
60 1dqv_A Synaptotagmin III; beta 99.2 2.1E-11 7.1E-16 134.7 8.7 104 147-252 38-148 (296)
61 1tjx_A Similar to synaptotagmi 99.2 2.2E-11 7.4E-16 121.8 7.6 70 147-216 43-120 (159)
62 1w15_A Synaptotagmin IV; metal 99.2 1E-11 3.5E-16 123.4 5.1 70 147-216 48-125 (153)
63 3n5a_A Synaptotagmin-7; calciu 99.2 1E-11 3.6E-16 120.6 5.0 71 147-217 34-112 (138)
64 2dwv_A Salvador homolog 1 prot 99.2 1.2E-11 4.2E-16 97.6 4.1 41 396-436 1-44 (49)
65 2r83_A Synaptotagmin-1; C2A-C2 99.2 7.4E-11 2.5E-15 129.2 11.4 101 147-252 37-146 (284)
66 3l4h_A E3 ubiquitin-protein li 99.1 2.9E-12 9.8E-17 117.0 -0.7 58 374-436 46-103 (109)
67 2zaj_A Membrane-associated gua 99.1 6E-11 2E-15 93.5 5.0 40 504-543 7-46 (49)
68 2law_A Yorkie homolog; YAP, SM 99.1 5.4E-11 1.8E-15 89.1 3.7 34 509-542 5-38 (38)
69 2yse_A Membrane-associated gua 99.1 8.1E-11 2.8E-15 96.5 4.9 42 503-544 6-47 (60)
70 2ysf_A E3 ubiquitin-protein li 99.1 1E-10 3.5E-15 88.6 5.0 35 508-542 5-39 (40)
71 2ysg_A Syntaxin-binding protei 99.1 9.2E-11 3.2E-15 88.8 4.7 35 508-542 5-39 (40)
72 2djy_A SMAD ubiquitination reg 99.1 1.1E-10 3.7E-15 89.2 4.6 35 509-543 6-40 (42)
73 2zaj_A Membrane-associated gua 99.0 1.6E-10 5.6E-15 91.0 5.0 40 590-629 7-46 (49)
74 1ymz_A CC45; artificial protei 99.0 1.2E-10 4E-15 89.9 4.1 38 399-436 2-39 (43)
75 1wr3_A Ubiquitin-protein ligas 99.0 1.7E-10 5.7E-15 85.5 4.6 34 509-542 3-36 (36)
76 2law_A Yorkie homolog; YAP, SM 99.0 1.2E-10 3.9E-15 87.3 3.8 35 594-628 4-38 (38)
77 1wr7_A NEDD4-2; all-beta, liga 99.0 1.5E-10 5.3E-15 88.2 4.4 35 508-542 6-40 (41)
78 2ysd_A Membrane-associated gua 99.0 2.8E-10 9.5E-15 92.7 6.1 35 370-404 11-45 (57)
79 3nsj_A Perforin-1; pore formin 99.0 1.5E-10 5.2E-15 137.0 6.5 88 147-250 411-501 (540)
80 2ysb_A Salvador homolog 1 prot 99.0 2.5E-10 8.5E-15 90.1 5.5 36 508-543 9-44 (49)
81 2djy_A SMAD ubiquitination reg 99.0 2E-10 6.8E-15 87.8 4.8 36 594-629 5-40 (42)
82 2kyk_A E3 ubiquitin-protein li 99.0 1.9E-10 6.3E-15 86.8 4.6 34 509-542 5-38 (39)
83 2ez5_W Dnedd4, E3 ubiquitin-pr 99.0 2.1E-10 7.1E-15 89.5 5.0 36 508-543 8-43 (46)
84 2ysg_A Syntaxin-binding protei 99.0 2.3E-10 7.7E-15 86.7 4.9 35 594-628 5-39 (40)
85 2ysf_A E3 ubiquitin-protein li 99.0 2.4E-10 8.1E-15 86.5 5.0 34 595-628 6-39 (40)
86 3jzy_A Intersectin 2; C2 domai 99.0 3.7E-10 1.3E-14 134.1 9.3 99 147-250 405-505 (510)
87 1wr7_A NEDD4-2; all-beta, liga 99.0 2.2E-10 7.4E-15 87.3 4.2 35 370-404 5-39 (41)
88 1ymz_A CC45; artificial protei 99.0 2.4E-10 8.3E-15 88.1 4.5 39 504-542 2-40 (43)
89 2l4j_A YES-associated protein 99.0 3.8E-10 1.3E-14 88.0 5.5 36 508-543 9-44 (46)
90 1wr4_A Ubiquitin-protein ligas 99.0 3E-10 1E-14 84.2 4.7 34 509-542 3-36 (36)
91 1i5h_W Rnedd4, ubiquitin ligas 99.0 3.4E-10 1.2E-14 89.9 4.8 36 508-543 9-44 (50)
92 2l4j_A YES-associated protein 99.0 4.1E-10 1.4E-14 87.8 5.1 35 370-404 8-42 (46)
93 2ez5_W Dnedd4, E3 ubiquitin-pr 99.0 3.6E-10 1.2E-14 88.2 4.7 35 370-404 7-41 (46)
94 2jmf_A E3 ubiquitin-protein li 99.0 3.7E-10 1.3E-14 90.6 4.8 36 508-543 16-51 (53)
95 1wr3_A Ubiquitin-protein ligas 99.0 3.4E-10 1.1E-14 83.8 4.2 32 372-403 3-34 (36)
96 1i5h_W Rnedd4, ubiquitin ligas 99.0 5.4E-10 1.8E-14 88.7 5.6 39 592-630 7-45 (50)
97 2dmv_A Itchy homolog E3 ubiqui 99.0 5E-10 1.7E-14 86.2 4.9 36 508-543 5-40 (43)
98 2kpz_A E3 ubiquitin-protein li 99.0 4.1E-10 1.4E-14 89.2 4.3 36 508-543 10-45 (49)
99 2kyk_A E3 ubiquitin-protein li 98.9 5.8E-10 2E-14 84.1 4.7 35 594-628 4-38 (39)
100 2ysb_A Salvador homolog 1 prot 98.9 8.6E-10 2.9E-14 87.1 5.6 36 370-405 8-43 (49)
101 2dmv_A Itchy homolog E3 ubiqui 98.9 7.3E-10 2.5E-14 85.3 5.0 35 371-405 5-39 (43)
102 1wmv_A WWOX, WW domain contain 98.9 1E-09 3.5E-14 88.5 6.0 39 593-631 8-46 (54)
103 1wr4_A Ubiquitin-protein ligas 98.9 5.6E-10 1.9E-14 82.7 4.1 32 372-403 3-34 (36)
104 2jmf_A E3 ubiquitin-protein li 98.9 4.9E-10 1.7E-14 89.9 4.0 38 639-676 15-52 (53)
105 1e0m_A Wwprototype; SH3 protot 98.9 8.3E-10 2.8E-14 82.3 4.6 33 510-542 3-35 (37)
106 2yse_A Membrane-associated gua 98.9 8.9E-10 3E-14 90.3 4.5 43 396-438 4-46 (60)
107 1e0m_A Wwprototype; SH3 protot 98.9 8.4E-10 2.9E-14 82.3 4.0 32 373-404 3-34 (37)
108 2kpz_A E3 ubiquitin-protein li 98.9 9.3E-10 3.2E-14 87.1 4.2 37 594-630 10-46 (49)
109 2r83_A Synaptotagmin-1; C2A-C2 98.9 1.6E-09 5.3E-14 118.6 7.4 71 147-217 168-246 (284)
110 2ysh_A GAS-7, growth-arrest-sp 98.9 1.3E-09 4.3E-14 82.7 4.6 34 371-404 5-38 (40)
111 2ysh_A GAS-7, growth-arrest-sp 98.9 1.8E-09 6.2E-14 81.9 4.9 35 508-542 5-39 (40)
112 1wmv_A WWOX, WW domain contain 98.9 1.4E-09 4.9E-14 87.6 4.5 42 640-681 9-50 (54)
113 1djx_A PLC-D1, phosphoinositid 98.8 2.9E-09 9.8E-14 128.8 8.3 95 147-249 517-620 (624)
114 1cjy_A CPLA2, protein (cytosol 98.8 2.3E-09 7.7E-14 130.8 7.1 72 147-219 39-114 (749)
115 2ho2_A Fe65 protein, amyloid b 98.8 2.7E-09 9.4E-14 79.3 4.3 33 510-543 3-35 (38)
116 3bxj_A RAS GTPase-activating p 98.8 5.6E-10 1.9E-14 131.4 -0.8 70 150-219 27-104 (483)
117 1dqv_A Synaptotagmin III; beta 98.8 9.1E-10 3.1E-14 121.5 0.8 72 147-218 170-249 (296)
118 2ho2_A Fe65 protein, amyloid b 98.7 4.8E-09 1.7E-13 78.0 3.8 30 373-403 3-32 (38)
119 2ysc_A Amyloid beta A4 precurs 98.7 5.4E-09 1.8E-13 78.2 4.0 32 371-403 6-37 (39)
120 2ysc_A Amyloid beta A4 precurs 98.7 6.3E-09 2.2E-13 77.9 4.3 33 508-541 6-38 (39)
121 1jmq_A YAP65, 65 kDa YES-assoc 98.7 3.3E-09 1.1E-13 83.0 2.7 36 509-544 7-42 (46)
122 2e45_A Fe65 protein, amyloid b 98.7 1.9E-08 6.6E-13 79.3 4.7 34 370-404 16-49 (55)
123 1jmq_A YAP65, 65 kDa YES-assoc 98.6 1.3E-08 4.4E-13 79.6 3.6 36 370-405 5-40 (46)
124 2jv4_A Peptidyl-prolyl CIS/tra 98.6 1.6E-08 5.3E-13 81.5 4.0 31 373-403 7-38 (54)
125 2jv4_A Peptidyl-prolyl CIS/tra 98.6 2.2E-08 7.5E-13 80.6 4.7 35 509-543 6-41 (54)
126 2enj_A NPKC-theta, protein kin 98.6 6.8E-08 2.3E-12 91.7 8.3 92 149-252 31-129 (138)
127 1yrk_A NPKC-delta, protein kin 98.6 9.8E-08 3.4E-12 89.5 8.8 90 149-250 26-122 (126)
128 2e45_A Fe65 protein, amyloid b 98.6 3.2E-08 1.1E-12 78.1 4.2 36 506-542 15-50 (55)
129 2ysi_A Transcription elongatio 98.6 6.1E-08 2.1E-12 73.1 5.2 35 372-406 6-40 (40)
130 3pfq_A PKC-B, PKC-beta, protei 98.5 4.9E-08 1.7E-12 119.8 6.7 74 147-220 190-270 (674)
131 1e0l_A Formin binding protein; 98.5 1.3E-07 4.3E-12 70.2 4.3 33 374-406 4-36 (37)
132 3ohm_B 1-phosphatidylinositol- 98.4 2.6E-07 9E-12 114.5 7.7 91 149-251 741-843 (885)
133 1ywi_A Formin-binding protein 98.3 2.1E-07 7E-12 70.7 2.7 33 372-404 8-40 (41)
134 3qr0_A Phospholipase C-beta (P 98.3 5.8E-07 2E-11 110.8 7.9 90 149-250 666-768 (816)
135 2zkm_X 1-phosphatidylinositol- 98.3 1E-06 3.5E-11 109.1 8.3 67 149-219 694-771 (799)
136 2jx8_A Hpcif1, phosphorylated 98.2 3.3E-07 1.1E-11 73.2 1.5 34 510-543 10-44 (52)
137 2jx8_A Hpcif1, phosphorylated 98.2 2.6E-07 8.7E-12 73.8 0.8 33 372-404 9-42 (52)
138 1eg3_A Dystrophin; EF-hand lik 98.2 5.4E-07 1.8E-11 96.5 3.4 36 509-544 10-45 (261)
139 1eg3_A Dystrophin; EF-hand lik 98.1 7.6E-07 2.6E-11 95.4 2.7 36 595-630 10-45 (261)
140 2ysi_A Transcription elongatio 98.1 2.9E-06 9.8E-11 64.0 5.0 33 509-541 6-38 (40)
141 3tc5_A Peptidyl-prolyl CIS-tra 98.1 1.7E-06 5.8E-11 86.8 4.2 36 508-543 7-43 (166)
142 1e0l_A Formin binding protein; 98.0 4.2E-06 1.4E-10 62.0 4.0 31 406-436 4-34 (37)
143 3tc5_A Peptidyl-prolyl CIS-tra 98.0 2.6E-06 8.9E-11 85.4 3.8 32 372-403 8-40 (166)
144 1ywi_A Formin-binding protein 98.0 4.2E-06 1.4E-10 63.4 3.2 33 509-541 8-40 (41)
145 2dk7_A Transcription elongatio 97.9 4.7E-06 1.6E-10 70.0 3.8 30 377-406 21-50 (73)
146 1e0n_A Hypothetical protein; Y 97.9 5.2E-06 1.8E-10 56.8 2.9 26 377-403 2-27 (27)
147 1e0n_A Hypothetical protein; Y 97.8 1.1E-05 3.7E-10 55.2 2.7 27 408-435 1-27 (27)
148 2dk1_A WW domain-binding prote 97.8 1.2E-05 4.1E-10 63.5 3.3 36 377-412 8-43 (50)
149 3pt3_A E3 ubiquitin-protein li 97.0 2.1E-05 7.2E-10 73.9 -4.6 39 99-137 2-47 (118)
150 2dk1_A WW domain-binding prote 97.0 0.00029 9.7E-09 55.6 2.4 29 408-436 7-35 (50)
151 2dk7_A Transcription elongatio 97.0 0.00037 1.3E-08 58.6 3.0 30 408-437 20-49 (73)
152 1yw5_A Peptidyl prolyl CIS/tra 94.9 0.02 6.7E-07 57.8 4.7 32 373-404 7-39 (177)
153 1yw5_A Peptidyl prolyl CIS/tra 94.5 0.028 9.6E-07 56.7 4.8 33 510-542 7-40 (177)
154 3le4_A Microprocessor complex 89.8 0.4 1.4E-05 40.0 4.8 35 507-541 25-59 (79)
155 3le4_A Microprocessor complex 86.7 0.81 2.8E-05 38.2 4.7 34 371-404 26-59 (79)
156 2yrb_A Protein fantom; beta sa 55.8 46 0.0016 32.3 9.0 93 151-250 41-147 (156)
157 2wxf_A Phosphatidylinositol-4, 37.2 44 0.0015 41.9 7.0 50 150-199 235-294 (940)
158 1d9n_A Methyl-CPG-binding prot 37.1 27 0.00092 29.7 3.6 29 504-532 4-40 (75)
159 3hhm_A Phosphatidylinositol-4, 30.3 74 0.0025 40.3 7.5 67 150-217 375-455 (1091)
160 1e7u_A Phosphatidylinositol 3- 27.4 45 0.0015 41.8 4.8 50 150-199 238-296 (961)
161 3l4c_A Dedicator of cytokinesi 27.2 1.1E+02 0.0036 31.5 6.8 54 162-215 77-138 (220)
162 2ky8_A Methyl-CPG-binding doma 22.5 48 0.0017 27.8 2.6 11 373-383 12-22 (72)
163 1d9n_A Methyl-CPG-binding prot 20.6 74 0.0025 26.9 3.4 37 399-436 4-48 (75)
No 1
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-83 Score=735.27 Aligned_cols=348 Identities=48% Similarity=0.834 Sum_probs=314.1
Q ss_pred CCCCCCCCcceeeccCcceeeeccCCCccccCCCCCCCCCCCCCccCCccccchhhhhhhhhhhhhhccCCCCCceEEEe
Q psy16327 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITV 718 (994)
Q Consensus 639 ~~~~LP~gWe~~~~~~g~~yfv~hn~r~tt~~dPr~~~~~~~~~~~~~~~~~~~~f~~k~~~fr~~~~~~~~~~~~~i~V 718 (994)
..+|||+|||++++.+|++|||||++++|||.|||....... ...+|+|+|++|+.+||+++..+..+++++|+|
T Consensus 5 ~~~~lP~gWe~~~~~~g~~y~i~h~~~~t~w~~Pr~~~~~~~-----~~~~y~~~~~~k~~~f~~~~~~~~~~~~~~l~V 79 (429)
T 3olm_A 5 QLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLDQ-----NVPQYKRDFRRKVIYFRSQPALRILPGQCHIKV 79 (429)
T ss_dssp CCCCCCTTCCCCCSSCCCCCEEETTTTEEESSCTTSCCCCCS-----SCCHHHHHHHHHHHHHHSSGGGSCCSSCEEEEE
T ss_pred cCCCCCCCceeEECCCCCeEEEeCCCcceeccCCCCCccccc-----CcccccccchHHHHHHHHHHhhcCCCCceEEEE
Confidence 458999999999999999999999999999999998654332 234699999999999999988888899999999
Q ss_pred cCCccchHhHHHhhcCCccccCceeEEEEeCcccccCCchHHHHHHHHHHHHhCCCCCCccccCCCCceeeeCCCCCCCc
Q psy16327 719 ARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNP 798 (994)
Q Consensus 719 ~R~~i~eds~~~l~~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~~el~~p~~~lF~~~~~~~~~~~~np~s~~~~ 798 (994)
||++||+|++++|++..+.+||++|+|+|.||+|+|+|||+||||++|++|||+|.||||+++.++++++++||.+.+++
T Consensus 80 rR~~i~eds~~~l~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~~~~ 159 (429)
T 3olm_A 80 RRKNIFEDAYQEIMRQTPEDLKKRLMIKFDGEEGLDYGGVSREFFFLLSHEMFNPFYCLFEYSAYDNYTIQINPNSGINP 159 (429)
T ss_dssp ETTSHHHHHHHHHHHSCHHHHTSCEEEEEETTC--------CHHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGGGST
T ss_pred ecchhHHHHHHHHHhcChHhcCcceEEEECCCCccCCChhHHHHHHHHHHHHcCccCCCceeeCCCCeeEeeCCcccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChHhHhhHHHHHhcCCCccceeeEEEEEEEec
Q psy16327 799 DHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEIL 878 (994)
Q Consensus 799 ~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l~~sL~~l~~~~~~~~~l~l~F~~~~~~~ 878 (994)
+|+++|+|+|+|||+||+++.+++++|+++|||+|||++++++||+++||++|++|+||+++++++ .++++|+++.+.+
T Consensus 160 ~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~k~Llg~~~~l~Dl~~~Dp~l~~sL~~ll~~d~~~-~l~l~F~~~~~~~ 238 (429)
T 3olm_A 160 EHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEVYNSLNWMLENSIDG-VLDLTFSADDERF 238 (429)
T ss_dssp THHHHHHHHHHHHHHHHHTTCCCCCCBCHHHHHHHTTCCCCHHHHHHHCHHHHHHHHHHTTSCCTT-TCCCBSEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCCCcCHHHHHhhcCCCCCHHHHHHHhHHHHHHHHHHHhCCHHH-hhcCceEEEeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999887 4899999999999
Q ss_pred ceeEeeeeccCCceeeeccchHHHHHHHHH----------------hcc--------------------ccc--------
Q psy16327 879 GQVIHHELKENGDKIRVCEENKEEYMRWYG----------------SGS--------------------SCE-------- 914 (994)
Q Consensus 879 g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~----------------~G~--------------------lcG-------- 914 (994)
|...++||+|||++|+||.+||+|||++++ +|| +||
T Consensus 239 g~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~vip~~~L~~F~~~ELe~Li~G~~~id~~d 318 (429)
T 3olm_A 239 GEVVTVDLKPDGRNIEVTDGNKKEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIED 318 (429)
T ss_dssp TEEEEEESSTTGGGSBCCTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCHHHHTTSCHHHHHHHHTCBCCCCHHH
T ss_pred CceeeEeccCCCcccccCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhcCCHHHHhcCCHHHHHHHhcCCCCCCHHH
Confidence 999999999999999999999999999988 255 888
Q ss_pred ---eeeecC------e---------------------e---eeccCCCCCCCCCCCCCCCCcceeeeecCCCCCCcEEec
Q psy16327 915 ---RAIVRR------E---------------------P---VCFSSLPGHAVFPWEDLPNSWRFCIEKVGKDTWLPRSHT 961 (994)
Q Consensus 915 ---~t~y~~------q---------------------i---s~r~P~~Gf~~l~~~~~~~~~~f~i~~~~~~~~LP~A~T 961 (994)
+|.|.+ . | ++|+|++||+.|++++ |+++|+|++.+++++||+|||
T Consensus 319 l~~~t~y~Gy~~~~~~I~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~--g~~~f~I~~~~~~~~LP~A~T 396 (429)
T 3olm_A 319 WKKHTDYRGYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSD--GPRRFTIEKAGEVQQLPKSHT 396 (429)
T ss_dssp HHHTEEEESCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCBCTTCGGGCEETT--EECCEEEECCSCTTSCCEEEG
T ss_pred HHHhccccCCCCCchHHHHHHHHHHhCCHHHHHHHHhHhcCCCCCCCcccccccCcC--CCceEEEeeCCCCCCCCcccc
Confidence 678865 0 1 8999999999998776 778999999988899999999
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHcCCCCCCC
Q psy16327 962 CFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQE 994 (994)
Q Consensus 962 Cfn~L~LP~Y~s~e~L~eKL~~AI~~~~GFg~~ 994 (994)
|||+|+||+|+|+|+||+||++||++++|||+|
T Consensus 397 CfN~L~LP~Yss~e~L~ekL~~AI~~~~GFg~e 429 (429)
T 3olm_A 397 CFNRVDLPQYVDYDSMKQKLTLAVEETIGFGQE 429 (429)
T ss_dssp GGTEEECCCCSSHHHHHHHHHHHHHHTC-----
T ss_pred ccCEeECCCCCCHHHHHHHHHHHHHcCCCCCCC
Confidence 999999999999999999999999999999998
No 2
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-70 Score=623.91 Aligned_cols=301 Identities=47% Similarity=0.835 Sum_probs=275.4
Q ss_pred chhhhhhhhhhhhhhc-cCCCCCceEEEecCCccchHhHHHhhcCCccccCceeEEEEeCcccccCCchHHHHHHHHHHH
Q psy16327 691 ERSFRWKLSQFRYLCH-HNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHE 769 (994)
Q Consensus 691 ~~~f~~k~~~fr~~~~-~~~~~~~~~i~V~R~~i~eds~~~l~~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~~e 769 (994)
+|+|++|+.+||..+. ....+++++|+|||++||+|++++|+++.+.+||++|+|+|.||+|+|+|||+||||++|++|
T Consensus 1 ~r~f~~k~~~f~~~l~~~~~~~~~~~l~V~R~~i~~ds~~~l~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~e 80 (380)
T 1zvd_A 1 KRDLVQKLKILRQELSQQQPQAGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRGEEGLDYGGVAREWLYLLSHE 80 (380)
T ss_dssp CCSHHHHHHHHHHHHHHHSCSSCEEEEEECSTTHHHHHHHHHHTSCGGGGGSEEEEEETTCCCSCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhcCCCCCceEEEEccCCHHHHHHHHHHccCHHHhcCceEEEECCCcCcCCCccHHHHHHHHHHH
Confidence 4899999999998744 355678999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCccccCCCCceeeeCCCCCCCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChH
Q psy16327 770 VLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPE 849 (994)
Q Consensus 770 l~~p~~~lF~~~~~~~~~~~~np~s~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~ 849 (994)
+++|.+|||.++++++|++++||.+.++++|+++|+|||++||+||+++.+++++|+++|||+|||++++++||+++||+
T Consensus 81 l~~p~~gLF~~~~~~~~~~~~np~s~~~~~~l~~f~flG~l~g~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~ 160 (380)
T 1zvd_A 81 MLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPD 160 (380)
T ss_dssp HTSGGGSSEEEETTEEEEEEECTTGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCSTTHHHHCHH
T ss_pred HcCCcCCCeeccCCCCeeeccCchhhcChHHHHHHHHhHHHHHHHHhCCceeCCcCCHHHHHHHhCCCCCHHHHHHhCHH
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhHHHHHhcCCCccceeeEEEEEEEecceeEeeeeccCCceeeeccchHHHHHHHHH----------------hcc--
Q psy16327 850 FYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYG----------------SGS-- 911 (994)
Q Consensus 850 l~~sL~~l~~~~~~~~~l~l~F~~~~~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~----------------~G~-- 911 (994)
+|++|+||+++++++ .++++|+++.+.+|...++||+|||++|+||.+||+|||++++ +||
T Consensus 161 l~~sL~~ll~~d~~~-~l~ltF~~~~~~~g~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~ 239 (380)
T 1zvd_A 161 LHNSLVWILENDITG-VLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNE 239 (380)
T ss_dssp HHHHHHHHHHSCCTT-TSCCCSEEEEEETTEEEEEESSTTCCCCCCTTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccc-cccceeEEeeecCCcEeEEecCCCCCCCccccccHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Confidence 999999999999887 4899999999999999999999999999999999999999988 255
Q ss_pred ------------------ccc-----------eeeecC------e---------------------e---eeccCCCCCC
Q psy16327 912 ------------------SCE-----------RAIVRR------E---------------------P---VCFSSLPGHA 932 (994)
Q Consensus 912 ------------------lcG-----------~t~y~~------q---------------------i---s~r~P~~Gf~ 932 (994)
+|| +|.|.+ . | ++|+|++||+
T Consensus 240 vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~gy~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~ 319 (380)
T 1zvd_A 240 VIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRLKHCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFK 319 (380)
T ss_dssp HSCGGGGTTCCHHHHHHHHHCBSSCCHHHHHHTEEEESSCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSSBCTTCGG
T ss_pred HhHHHHHhCCCHHHHHHhhCCCCCCChhhhhhccEecCCCCCcchhhhHHHHHHhCCHHHHHHHHHHHhCCCCCCCcchh
Confidence 788 788865 0 1 8999999999
Q ss_pred CCCCCCCCCCcceeeee-cCCCCCCcEEeccccccccCCCCCHHHHHHHHHHHHHcCCCCCCC
Q psy16327 933 VFPWEDLPNSWRFCIEK-VGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQE 994 (994)
Q Consensus 933 ~l~~~~~~~~~~f~i~~-~~~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~~~GFg~~ 994 (994)
.|++++ |+++|+|++ .+++++||+||||||+|+||+|+|+|+|++||++||++++|||+|
T Consensus 320 ~L~~~~--gp~~f~I~~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~GF~l~ 380 (380)
T 1zvd_A 320 ALQGAA--GPRLFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCGFAVE 380 (380)
T ss_dssp GCEETT--EECCEEEEECCCCTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHHCC-------
T ss_pred hccccC--CCCceEEEecCCCCCCCCEEecCcCEEECCCCCCHHHHHHHHHHHHHhCCCcCcC
Confidence 998877 888999994 556789999999999999999999999999999999999999997
No 3
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=100.00 E-value=5.2e-70 Score=619.37 Aligned_cols=297 Identities=69% Similarity=1.226 Sum_probs=282.8
Q ss_pred chhhhhhhhhhhhhhccCCCCCceEEEecCCccchHhHHHhhcCCccccCceeEEEEeCcccccCCchHHHHHHHHHHHH
Q psy16327 691 ERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEV 770 (994)
Q Consensus 691 ~~~f~~k~~~fr~~~~~~~~~~~~~i~V~R~~i~eds~~~l~~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~~el 770 (994)
.|+|++|+.+||++++....+++++|+|+|++||+|++++|+++++.+||++|+|+|.||+|+|+|||+||||++|++|+
T Consensus 1 ~~~f~~k~~~f~~~~~~~~~~~~~~l~V~R~~i~~ds~~~l~~~~~~~l~~~l~V~F~gE~G~D~GG~~rEff~ll~~el 80 (374)
T 1nd7_A 1 HMGFRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEV 80 (374)
T ss_dssp CCTHHHHHHHHHHHHHHTCCSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETTTCCCCCTHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhhcCCCCCeEEEECCCCHHHHHHHHHHhcCHHhccceEEEEECCCCCcCCCccHHHHHHHHHHHH
Confidence 47999999999999988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCccccCCCCceeeeCCCCCCCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChHh
Q psy16327 771 LNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEF 850 (994)
Q Consensus 771 ~~p~~~lF~~~~~~~~~~~~np~s~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l 850 (994)
++|++|||++++.++|++++||.+..+++|+++|+|||++||+||++|.+++++|+++|||+|||++++++||+++||++
T Consensus 81 ~~p~~~lF~~~~~~~~~~~~~p~s~~~~~~l~~f~flG~lig~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l 160 (374)
T 1nd7_A 81 LNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEF 160 (374)
T ss_dssp TCGGGSSEEESSSSSCCEEECGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHTTCHHH
T ss_pred cCCccccccccCCCCceeccCCcccCCHHHHHHHHHHHHHHHHHHhcCCeeCCcCCHHHHHHHhCCCCCHHHHHHhhHHH
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHhcCCCccceeeEEEEEEEecceeEeeeeccCCceeeeccchHHHHHHHHH----------------hcc---
Q psy16327 851 YNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYG----------------SGS--- 911 (994)
Q Consensus 851 ~~sL~~l~~~~~~~~~l~l~F~~~~~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~----------------~G~--- 911 (994)
|++|+||+++++++++++++|+++.+.+|...++||+|||++|+||.+||+|||++++ +||
T Consensus 161 ~~sL~~l~~~~~~~~~l~l~F~~~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~v 240 (374)
T 1nd7_A 161 YNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEV 240 (374)
T ss_dssp HHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHhhhhhccCChhhhhcceeEEEeeccCCceeeEecCCCCcCceeccccHHHHHHHHHHHHHhccHHHHHHHHHHhhhhh
Confidence 9999999999999888999999999999999999999999999999999999999988 255
Q ss_pred -----------------ccc-----------eeeecC------e---------------------e---eeccCCCCCCC
Q psy16327 912 -----------------SCE-----------RAIVRR------E---------------------P---VCFSSLPGHAV 933 (994)
Q Consensus 912 -----------------lcG-----------~t~y~~------q---------------------i---s~r~P~~Gf~~ 933 (994)
+|| +|.|.+ + | ++|+|++||+.
T Consensus 241 ip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~ 320 (374)
T 1nd7_A 241 VPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAE 320 (374)
T ss_dssp SCGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEESCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGG
T ss_pred CCHHHHhcCCHHHHHHHhcCCCCCCHHHHhhheEEcCCCCCCcceeeHHHHHHhcCHHHHHHHHHHHhCCCCCCCcchhh
Confidence 788 678865 1 1 89999999999
Q ss_pred CCCCCCCCCcceeeeecCCCCCCcEEeccccccccCCCCCHHHHHHHHHHHHHcCC
Q psy16327 934 FPWEDLPNSWRFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETE 989 (994)
Q Consensus 934 l~~~~~~~~~~f~i~~~~~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~~~ 989 (994)
|++++ |+++|+|++.+++++||+||||||+|+||+|+|+|+|++||++||+|++
T Consensus 321 L~~~~--gp~~f~I~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~e 374 (374)
T 1nd7_A 321 LMGSN--GPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE 374 (374)
T ss_dssp CEETT--EECCEEEECCSCTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred ccccC--CCCceEEEeCCCCCcCCEEEcccCEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 99887 8889999999999999999999999999999999999999999999974
No 4
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=100.00 E-value=5.7e-69 Score=612.62 Aligned_cols=301 Identities=38% Similarity=0.665 Sum_probs=269.9
Q ss_pred chhhhhhhhhhhhhhcc---CCCCCceEEEecCCccchHhHHHhhcCCccccCceeEEEEeCcccccCCchHHHHHHHHH
Q psy16327 691 ERSFRWKLSQFRYLCHH---NVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLS 767 (994)
Q Consensus 691 ~~~f~~k~~~fr~~~~~---~~~~~~~~i~V~R~~i~eds~~~l~~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~ 767 (994)
.++|++|+.+||..+++ ...+++++|+|||++||+|+|++|++.++.+||++|+|+|.||+|+|+||++||||++|+
T Consensus 22 ~~~f~~k~~~F~~~l~~~~~~~~~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~ 101 (405)
T 3h1d_A 22 HMDFDVKRKYFRQELERLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIIS 101 (405)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTCCCCEEEEEECGGGHHHHHHHHHTTSCTTGGGSEEEEEETTCCSCCCTTHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhhcCCCCCceEEEEeCchHHHHHHHHHHccCHHHhhcceEEEECCCCCcCCChhHHHHHHHHH
Confidence 36999999999986653 234678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCccccCCCCceeeeCCCCCCCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccC
Q psy16327 768 HEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESID 847 (994)
Q Consensus 768 ~el~~p~~~lF~~~~~~~~~~~~np~s~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vD 847 (994)
+|+|+|+||||++++++++++++||.+..+++|+++|+|+|++||+|||++.++|++|+++|||+|||++++++||+++|
T Consensus 102 ~elf~p~~gLF~~~~~~~~~~~~np~s~~~~~~l~~f~flGrliG~Al~~~~~ld~~F~~~f~K~Llg~~~~l~DL~~~D 181 (405)
T 3h1d_A 102 REMFNPMYALFRTSPGDRVTYTINPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESED 181 (405)
T ss_dssp HHTTCGGGTSEEECSSCSSEEEECCC-----CHHHHHHHHHHHHHHHHHHTCCCCCEECHHHHHHHHTCCCCGGGHHHHC
T ss_pred HHHhCCcccceeeccCCceeEeeCCccccChhHHHHHHHHhHHHHHHHhCCCccCCCccHHHHHHhcCCCCCHHHHHHhh
Confidence 99999999999999988999999999988999999999999999999999999999999999999999999999999999
Q ss_pred hHhHhhHHHHHhcCCCccceeeEEEEEEEecceeEeeeeccCCceeeeccchHHHHHHHHH----------------hcc
Q psy16327 848 PEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYG----------------SGS 911 (994)
Q Consensus 848 p~l~~sL~~l~~~~~~~~~l~l~F~~~~~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~----------------~G~ 911 (994)
|++|++|+||+++++++++++++|+++.+.+|...++||+|||++|+||.+||+|||++++ +||
T Consensus 182 p~l~~sL~~ll~~~~~~l~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf 261 (405)
T 3h1d_A 182 YHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGF 261 (405)
T ss_dssp HHHHHHHHHHHHSCGGGSSSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHHHHHHHHHHHHHTGGGHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcCChhhhcceeEEEEEeecCCceeeEeecCCCCCCccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888899999988888988899999999999999999999999988 255
Q ss_pred --------------------ccc-----------eeeecC------ee------------------------eeccCCCC
Q psy16327 912 --------------------SCE-----------RAIVRR------EP------------------------VCFSSLPG 930 (994)
Q Consensus 912 --------------------lcG-----------~t~y~~------qi------------------------s~r~P~~G 930 (994)
+|| +|.|.+ +| ++|+|++|
T Consensus 262 ~~Vip~~~L~lF~~~ELe~Li~G~~~id~~dl~~~t~y~gy~~~~~~i~~FW~v~~~~s~eer~~fL~FvTGs~rlP~~G 341 (405)
T 3h1d_A 262 YEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQG 341 (405)
T ss_dssp HHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTEEEESSCTTCHHHHHHHHHHHHSCHHHHHHHHHHHHSSSCCCTTC
T ss_pred HHHhhHHHHhCCCHHHHHHHhCCCCCCCHHHHHhhCcccCCCCCCchHhhHHHHHHhCCHHHHHHHHHHHcCCCCCCCCc
Confidence 888 678864 11 89999999
Q ss_pred CCCCCCCCCCCCcceeeeecC-CCCCCcEEeccccccccCCCCCHHHHHHHHHHHHHc-CCCCCC
Q psy16327 931 HAVFPWEDLPNSWRFCIEKVG-KDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEE-TEGFGQ 993 (994)
Q Consensus 931 f~~l~~~~~~~~~~f~i~~~~-~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~-~~GFg~ 993 (994)
|+.|.+.+ ++++|+|++.+ ++++||+||||||+|+||+|+|+|+||+||++||+| ++|||+
T Consensus 342 f~~L~~~~--~~~~f~i~~~~~~~~~LP~a~TCfn~L~LP~Yss~e~l~ekL~~AI~e~~~GFgl 404 (405)
T 3h1d_A 342 FAALEGMN--GIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQEASEGFGL 404 (405)
T ss_dssp GGGCBCSS--SBCCEEEEEECSCTTSCCEEEGGGTEEEEECCSSHHHHHHHHHHHHHC-------
T ss_pred cccccccC--CCceEEEeeCCCCCCCCccceeccCEeECCCCCCHHHHHHHHHHHHHhCCCCcCC
Confidence 99998876 78899999875 468999999999999999999999999999999999 589997
No 5
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=100.00 E-value=2.7e-67 Score=599.34 Aligned_cols=299 Identities=43% Similarity=0.764 Sum_probs=275.0
Q ss_pred CCccccchhhhhhhhhhhhhhccC-CCCCceEEEecCCccchHhHHHhhcCCc-cccCceeEEEEeCcccccCCchHHHH
Q psy16327 685 GVPKAYERSFRWKLSQFRYLCHHN-VLPSHIKITVARQTLFEDSYHQVMRLPA-YELRRRLYIIFRGEEGLDYGGVSREW 762 (994)
Q Consensus 685 ~~~~~~~~~f~~k~~~fr~~~~~~-~~~~~~~i~V~R~~i~eds~~~l~~~~~-~~l~~~l~V~F~GE~GiD~GG~~REf 762 (994)
+...||.++|++|+.+|+..+... ..+++++|+|||++||+|++++|+.++. ..||++|+|+|.||+|+|+|||+|||
T Consensus 13 ~~~~p~~~~f~~k~~~f~~~l~~~~~~~~~~~l~V~R~~i~eds~~~l~~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEf 92 (392)
T 2oni_A 13 NLYFQGSREFKQKYDYFRKKLKKPADIPNRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVAREW 92 (392)
T ss_dssp -CCSTTHHHHHHHHHHHHHHCCCCSSSCSEEEEEECGGGHHHHHHHHHHHCSCGGGGGSEEEEEEC-CCSSCHHHHHHHH
T ss_pred ccCCCccccHHHHHHHHHHHHhcccCCCCCEEEEEcCCchHHHHHHHHHccCcHHhhCccEEEEECCCccccCCccHHHH
Confidence 456799999999999999877653 4678999999999999999999998764 45899999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCccccCCCCceeeeCCCCC-CCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChh
Q psy16327 763 FFLLSHEVLNPMYCLFEYANKNNYSLQINPASY-VNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMK 841 (994)
Q Consensus 763 f~ll~~el~~p~~~lF~~~~~~~~~~~~np~s~-~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~ 841 (994)
|++|++|+|+|.||||.+++.++|++++||.+. .+++|+++|+|||++||+||++|.+++++|+++|||+|||++++++
T Consensus 93 f~ll~~el~~p~~gLF~~~~~~~~~~~~np~s~~~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~K~llg~~~~l~ 172 (392)
T 2oni_A 93 FFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLN 172 (392)
T ss_dssp HHHHHHHHTCGGGSSEEESSTTCCCEEECTTHHHHCTTHHHHHHHHHHHHHHHHHHTCCCSSCBCHHHHHHHTTCCCCTH
T ss_pred HHHHHHHHcCcccCCceecCCCCceeccCCccccccHHHHHHHHhcchhhhhhhcCCcccCccchHHHHHHHhCCCCCHH
Confidence 999999999999999999998999999999986 4788999999999999999999999999999999999999999999
Q ss_pred hhhccChHhHhhHHHHHhcCCCccceeeEEEEEEEecceeEeeeeccCCceeeeccchHHHHHHHHH-------------
Q psy16327 842 DIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWYG------------- 908 (994)
Q Consensus 842 DL~~vDp~l~~sL~~l~~~~~~~~~l~l~F~~~~~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~------------- 908 (994)
||+++||++|++|+||+++++++ ++++|+++.+.+|...++||+|||++|+||.+||+|||++++
T Consensus 173 Dl~~~Dp~l~~sL~~l~~~d~~~--l~L~F~v~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~ 250 (392)
T 2oni_A 173 DMESVDSEYYNSLKWILENDPTE--LDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMN 250 (392)
T ss_dssp HHHTTCHHHHHHHHHHHHSCCGG--GCCBSEEEEEETTEEEEEESSTTGGGCBCCTTTHHHHHHHHHHHHHTTTSHHHHH
T ss_pred HHHHhCHHHHHHHHHHhcCChhH--ceeeEEEeeecCCceeEEecCCCCccCccchhhHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999998875 788999999999999999999999999999999999999988
Q ss_pred ---hcc--------------------ccc-----------eeeecC-------e---------------------e---e
Q psy16327 909 ---SGS--------------------SCE-----------RAIVRR-------E---------------------P---V 923 (994)
Q Consensus 909 ---~G~--------------------lcG-----------~t~y~~-------q---------------------i---s 923 (994)
+|| +|| +|.|.+ . | +
T Consensus 251 af~~Gf~~vip~~~L~~F~~~ELe~licG~~~id~~dl~~~t~y~~gy~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs 330 (392)
T 2oni_A 251 AFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGT 330 (392)
T ss_dssp HHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTCEEETTCCTTCHHHHHHHHHHHHSCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhccHHhhhcCCHHHHHHhhcCCCCCCHHHHhcceEECCCCCCCCchheeHHHHHHhCCHHHHHHHHHHHhCC
Confidence 255 888 678874 0 1 8
Q ss_pred eccCCCCCCCCCCCCCCCCcceeeeecCCCCCCcEEeccccccccCCCCCHHHHHHHHHHHHHc
Q psy16327 924 CFSSLPGHAVFPWEDLPNSWRFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEE 987 (994)
Q Consensus 924 ~r~P~~Gf~~l~~~~~~~~~~f~i~~~~~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~ 987 (994)
+|+|++||+.|.+++ |+++|+|++.+++++||+||||||+|+||+|+|+|+||+||++||++
T Consensus 331 ~rlP~~Gf~~L~~~~--gp~~f~I~~~~~~~~LP~a~TCfn~L~LP~Yss~e~L~~kL~~AI~n 392 (392)
T 2oni_A 331 SRVPMNGFAELYGSN--GPQLFTIEQWGSPEKLPRAHTCFNRLDLPPYETFEDLREKLLMAVEN 392 (392)
T ss_dssp SCCCTTCGGGCEETT--EECCCEEEECSCTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHHC-
T ss_pred CCCCCcchhhhcccC--CCCceEEEeCCCCCcCcEEEcccCEeECCCCCCHHHHHHHHHHHHhC
Confidence 999999999998877 88899999999899999999999999999999999999999999985
No 6
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=100.00 E-value=1.4e-61 Score=546.66 Aligned_cols=270 Identities=30% Similarity=0.539 Sum_probs=238.4
Q ss_pred CCceEEEecCCccchHhHHHhh---cCCccccCceeEEEEeCcccccCCchHHHHHHHHHHHHhCCCCCCccccCCCCce
Q psy16327 711 PSHIKITVARQTLFEDSYHQVM---RLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYS 787 (994)
Q Consensus 711 ~~~~~i~V~R~~i~eds~~~l~---~~~~~~l~~~l~V~F~GE~GiD~GG~~REff~ll~~el~~p~~~lF~~~~~~~~~ 787 (994)
.+.++|+|||++|++|++++|. ...+.+||++|+|+|.||+|+|+|||+||||++|++|+|+|++|||.++++++ .
T Consensus 3 ~~~~~l~V~R~~i~eds~~~l~~~~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~glF~~~~~~~-~ 81 (358)
T 1c4z_A 3 NPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTK-L 81 (358)
T ss_dssp CCSCCEEECSSSHHHHHHHHHHHHHHSCGGGGGSCCCEEETTCCCCCSSHHHHHHHHHHHHHHTSGGGCSEEEETTTT-E
T ss_pred CCeEEEEEcCCcHHHHHHHHHHHHhccCHHHhcCceEEEECCCcCcCCCccHHHHHHHHHHHHcCCcCCceeecCCCC-e
Confidence 4678999999999999999984 45678899999999999999999999999999999999999999999987655 5
Q ss_pred eeeCCCCCCCchhhHHHHHHHHHHHHHHhcCCccccCCCHHHHHHHhccCCChhhhhccChHhHhhHHHHHhcCCCcc-c
Q psy16327 788 LQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDEC-G 866 (994)
Q Consensus 788 ~~~np~s~~~~~~l~~f~fiGrlig~ai~~~~~l~~~f~~~f~k~Ll~~~~tl~DL~~vDp~l~~sL~~l~~~~~~~~-~ 866 (994)
+++||.+.. +.++|+|+|++||+||+++.+++++|+++|||+|||++++++||+++||++|++|+||++++.+.. .
T Consensus 82 ~~~np~s~~---~~~~f~flG~lig~Al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~~~d~~~~ 158 (358)
T 1c4z_A 82 FWFNPSSFE---TEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDD 158 (358)
T ss_dssp EEECTTCCS---CHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHHHSHHHHHHHHHHHHCCSCHHHH
T ss_pred EeeCCcccc---chHHHHhHHHHHHHHHHCCCCcCCcCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCCchhhh
Confidence 689998854 346899999999999999999999999999999999999999999999999999999999754321 4
Q ss_pred eeeEEEEEE-EecceeEeeeeccCCceeeeccchHHHHHHHHH----------------hcc------------------
Q psy16327 867 LELYLSVDF-EILGQVIHHELKENGDKIRVCEENKEEYMRWYG----------------SGS------------------ 911 (994)
Q Consensus 867 l~l~F~~~~-~~~g~~~~~eL~~~G~~i~VT~~Nk~eYv~l~~----------------~G~------------------ 911 (994)
++++|+++. +.+|...++||+|||++|+||.+||+|||++++ +||
T Consensus 159 l~ltF~~~~~~~~G~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~~EL 238 (358)
T 1c4z_A 159 MMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEI 238 (358)
T ss_dssp TCCBSEEEECCTTTCCEEEESSTTTTTSBCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHH
T ss_pred ccceEEEeccccCCCeeeeecCCCCcccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcchhhcCCCHHHH
Confidence 889999985 678999999999999999999999999999987 254
Q ss_pred ---ccc-----------eeeecC-------e---------------------e---eeccCCCCCCCCCCCCCCCCccee
Q psy16327 912 ---SCE-----------RAIVRR-------E---------------------P---VCFSSLPGHAVFPWEDLPNSWRFC 946 (994)
Q Consensus 912 ---lcG-----------~t~y~~-------q---------------------i---s~r~P~~Gf~~l~~~~~~~~~~f~ 946 (994)
+|| +|.|.+ + | ++|+|++||+.| +|+
T Consensus 239 e~li~G~~~id~~~l~~~t~y~~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~l---------~~~ 309 (358)
T 1c4z_A 239 ELLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL---------KMI 309 (358)
T ss_dssp HHHHHCBCCCCCTTTSTTCEEESSCCSSCHHHHHHHHHHHTSCHHHHHHHHHHHSSSSSBCTTCGGGG---------CCE
T ss_pred HHHhhcccCCCHHHHHHHceeCCCCCCCcchhhhHHHHHHhCCHHHHHHHHHHHcCCCCCCCCCcccc---------eee
Confidence 788 788874 0 1 899999999876 489
Q ss_pred eeecC-CCCCCcEEeccccccccCCCCCHHHHHHHHHHHHHcCCCCCC
Q psy16327 947 IEKVG-KDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQ 993 (994)
Q Consensus 947 i~~~~-~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~~~GFg~ 993 (994)
|++.+ ++++||+||||||+|+||+|+|+|+||+||++||++++|||+
T Consensus 310 I~~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~GFgl 357 (358)
T 1c4z_A 310 IAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGM 357 (358)
T ss_dssp EEEEEESCSCCCEEEGGGTEEEEEECSCHHHHHHHHHHHHHHC-----
T ss_pred eecCCCCCCCCeEEEccCCEeECCCCCCHHHHHHHHHHHHHhCCCCCc
Confidence 98876 457999999999999999999999999999999999999997
No 7
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=99.89 E-value=3.1e-24 Score=243.93 Aligned_cols=124 Identities=37% Similarity=0.597 Sum_probs=112.1
Q ss_pred ccccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcccc
Q psy16327 4 TDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWL 83 (994)
Q Consensus 4 ~~~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L 83 (994)
..+.+|...+|||+ |||++|+||.+|++ +||+++++|+|+++|++|++||++||++|||.++|
T Consensus 184 ~~~~~g~~~~veL~-----p~G~~i~VT~~N~~------------eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L 246 (380)
T 1zvd_A 184 EHNAYGEIIQHELK-----PNGKSIPVNEENKK------------EYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLL 246 (380)
T ss_dssp EEEETTEEEEEESS-----TTCCCCCCTTTTHH------------HHHHHHHHHHHTTTTHHHHHHHHHHHHHHSCGGGG
T ss_pred eeecCCcEeEEecC-----CCCCCCccccccHH------------HHHHHHHHHHHHHhHHHHHHHHHHhHHHHhHHHHH
Confidence 34557777889995 88999999999999 99999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHcCCCccChhhhhhcceeCCccCCCcceeeEEEEe--cCcccccc---ccccccC
Q psy16327 84 KYFDERELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKNT--YQPKWNEE---FTVGGQG 144 (994)
Q Consensus 84 ~~f~~~EL~~ll~G~~~id~~~l~~~t~y~gy~~~s~~i~~fw~~f--~~~~e~~~---F~~~~~~ 144 (994)
++|+|+||+.||||.++||++||++||.|+||+++|++|+|||++. |++++|+. |.++..|
T Consensus 247 ~~F~~~ELe~li~G~~~id~~dl~~~t~y~gy~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~r 312 (380)
T 1zvd_A 247 KTFDEKELELIICGLGKIDVNDWKVNTRLKHCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSR 312 (380)
T ss_dssp TTCCHHHHHHHHHCBSSCCHHHHHHTEEEESSCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSS
T ss_pred hCCCHHHHHHhhCCCCCCChhhhhhccEecCCCCCcchhhhHHHHHHhCCHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999973 56666666 4555544
No 8
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=99.88 E-value=4.8e-24 Score=242.15 Aligned_cols=123 Identities=50% Similarity=0.828 Sum_probs=111.0
Q ss_pred cccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCccccc
Q psy16327 5 DDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLK 84 (994)
Q Consensus 5 ~~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L~ 84 (994)
.+.+|...+|||+ |||++|+||.+|++ +||++|++|+|+++|++|++||++||++|||.++|+
T Consensus 185 ~~~~G~~~~veL~-----p~G~~i~VT~~N~~------------eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~ 247 (374)
T 1nd7_A 185 MEILGKVTSHDLK-----LGGSNILVTEENKD------------EYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQ 247 (374)
T ss_dssp CCSSTTCCCEESS-----TTGGGCBCCTTTHH------------HHHHHHHHHHHHTTTHHHHHHHHHHHHHHSCGGGGT
T ss_pred eccCCceeeEecC-----CCCcCceeccccHH------------HHHHHHHHHHHhccHHHHHHHHHHhhhhhCCHHHHh
Confidence 3456777889995 88999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHcCCCccChhhhhhcceeCCccCCCcceeeEEEEe--cCcccccc---ccccccC
Q psy16327 85 YFDERELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKNT--YQPKWNEE---FTVGGQG 144 (994)
Q Consensus 85 ~f~~~EL~~ll~G~~~id~~~l~~~t~y~gy~~~s~~i~~fw~~f--~~~~e~~~---F~~~~~~ 144 (994)
+|+|+||+.||||.++||+++|++||.|+||+++|++|+|||++. |++++|+. |.++..|
T Consensus 248 ~F~~~ELe~li~G~~~id~~dl~~~t~y~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~r 312 (374)
T 1nd7_A 248 YFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCR 312 (374)
T ss_dssp TCCHHHHHHHHHCCCCCCHHHHHHTEEEESCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSC
T ss_pred cCCHHHHHHHhcCCCCCCHHHHhhheEEcCCCCCCcceeeHHHHHHhcCHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999973 45666666 4554444
No 9
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=99.88 E-value=2.3e-24 Score=245.63 Aligned_cols=121 Identities=31% Similarity=0.555 Sum_probs=108.3
Q ss_pred cCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcccccCC
Q psy16327 7 HYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYF 86 (994)
Q Consensus 7 ~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L~~f 86 (994)
.+|...+||| +|||++|+||.+|++ +||++|++|+|+++|++|++||++||++|||.++|++|
T Consensus 211 ~~G~~~~veL-----~p~G~~i~VT~~Nk~------------eYV~l~~~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~lF 273 (405)
T 3h1d_A 211 EFGVAEVRDL-----KPNGANILVTEENKK------------EYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIF 273 (405)
T ss_dssp CEEECCGGGG-----SSCSSEEECCTTTHH------------HHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHTTS
T ss_pred cCCceeeEee-----cCCCCCCccchHhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCC
Confidence 3455556677 589999999999999 99999999999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCCccChhhhhhcceeCCccCCCcceeeEEEEe--cCcccccc---ccccccC
Q psy16327 87 DERELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKNT--YQPKWNEE---FTVGGQG 144 (994)
Q Consensus 87 ~~~EL~~ll~G~~~id~~~l~~~t~y~gy~~~s~~i~~fw~~f--~~~~e~~~---F~~~~~~ 144 (994)
+|+||+.||||.++||+++|+++|.|.||+++|++|+|||++. |++++|+. |.++..|
T Consensus 274 ~~~ELe~Li~G~~~id~~dl~~~t~y~gy~~~~~~i~~FW~v~~~~s~eer~~fL~FvTGs~r 336 (405)
T 3h1d_A 274 TEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSK 336 (405)
T ss_dssp CHHHHHHHHHCCCCCCHHHHHHTEEEESSCTTCHHHHHHHHHHHHSCHHHHHHHHHHHHSSSC
T ss_pred CHHHHHHHhCCCCCCCHHHHHhhCcccCCCCCCchHhhHHHHHHhCCHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999973 56666666 4555444
No 10
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=99.87 E-value=1e-23 Score=240.50 Aligned_cols=124 Identities=31% Similarity=0.643 Sum_probs=111.5
Q ss_pred ccccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCcccc
Q psy16327 4 TDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWL 83 (994)
Q Consensus 4 ~~~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L 83 (994)
..+.+|...+|||+ |||++|+||.+|++ |||++|++|+|+++|++|++||++||++|||.++|
T Consensus 203 ~~~~~G~~~~veL~-----p~G~~i~VT~~N~~------------eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L 265 (392)
T 2oni_A 203 DEENFGQTYQVDLK-----PNGSEIMVTNENKR------------EYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLI 265 (392)
T ss_dssp EEEETTEEEEEESS-----TTGGGCBCCTTTHH------------HHHHHHHHHHHTTTSHHHHHHHHHHHHHHSCHHHH
T ss_pred eeecCCceeEEecC-----CCCccCccchhhHH------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccHHhh
Confidence 34567788899995 88999999999999 99999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHcCCCccChhhhhhcceeC-CccCCCcceeeEEEE--ecCcccccc---ccccccC
Q psy16327 84 KYFDERELELILCGMQEIDVEDWQRNAIYR-HYTRNSKQTTRVVKN--TYQPKWNEE---FTVGGQG 144 (994)
Q Consensus 84 ~~f~~~EL~~ll~G~~~id~~~l~~~t~y~-gy~~~s~~i~~fw~~--f~~~~e~~~---F~~~~~~ 144 (994)
++|+|+||+.||||.++||+++|+++|+|+ ||+++|++|+|||++ .|+++||+. |.++..|
T Consensus 266 ~~F~~~ELe~licG~~~id~~dl~~~t~y~~gy~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~r 332 (392)
T 2oni_A 266 KIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSR 332 (392)
T ss_dssp TTSCHHHHHHHHHCCCCCCHHHHHHTCEEETTCCTTCHHHHHHHHHHHHSCHHHHHHHHHHHHSCSC
T ss_pred hcCCHHHHHHhhcCCCCCCHHHHhcceEECCCCCCCCchheeHHHHHHhCCHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999 599999999999996 345666666 4555444
No 11
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.4e-23 Score=241.74 Aligned_cols=125 Identities=34% Similarity=0.620 Sum_probs=111.6
Q ss_pred cccccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCccc
Q psy16327 3 MTDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEW 82 (994)
Q Consensus 3 ~~~~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~ 82 (994)
+..+.+|...+|||+ |||++|+||.+|++ +||++|++|+|+++|++|++||++||++|||.++
T Consensus 233 ~~~~~~g~~~~veL~-----p~G~~i~VT~~Nk~------------eYV~l~~~~~l~~~v~~q~~aF~~Gf~~vip~~~ 295 (429)
T 3olm_A 233 ADDERFGEVVTVDLK-----PDGRNIEVTDGNKK------------EYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDL 295 (429)
T ss_dssp EEEEETTEEEEEESS-----TTGGGSBCCTTTHH------------HHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCHHH
T ss_pred EEeccCCceeeEecc-----CCCcccccCchhHH------------HHHHHHHHHHHHHhHHHHHHHHHHHhhhcCCHHH
Confidence 334567778889995 88999999999999 9999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHcCCCccChhhhhhcceeCCccCCCcceeeEEEEe--cCcccccc---ccccccC
Q psy16327 83 LKYFDERELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKNT--YQPKWNEE---FTVGGQG 144 (994)
Q Consensus 83 L~~f~~~EL~~ll~G~~~id~~~l~~~t~y~gy~~~s~~i~~fw~~f--~~~~e~~~---F~~~~~~ 144 (994)
|++|+|+||+.||||.++||++||++||.|.||+++|++|+|||++. |++++|+. |.++..|
T Consensus 296 L~~F~~~ELe~Li~G~~~id~~dl~~~t~y~Gy~~~~~~I~~FW~vv~~~s~eer~~fL~FvTGs~r 362 (429)
T 3olm_A 296 VTVFDERELELLIGGIAEIDIEDWKKHTDYRGYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSR 362 (429)
T ss_dssp HTTSCHHHHHHHHTCBCCCCHHHHHHTEEEESCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSC
T ss_pred HhcCCHHHHHHHhcCCCCCCHHHHHHhccccCCCCCchHHHHHHHHHHhCCHHHHHHHHhHhcCCCC
Confidence 99999999999999999999999999999999999999999999973 45666555 4444443
No 12
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=99.86 E-value=2.3e-23 Score=235.02 Aligned_cols=122 Identities=25% Similarity=0.430 Sum_probs=109.5
Q ss_pred ccCCceEEEEccccccCCCCCceeeCcccccccccccCCCCcccHHHHHHHHHhhhhHHHHHHHHHHhhccccCccccc-
Q psy16327 6 DHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLK- 84 (994)
Q Consensus 6 ~~~~~~~~vel~~~~~~~~G~~i~Vt~~N~~~~~vt~~~~~~~eYv~l~~~~~l~~~v~~q~~af~~Gf~~v~p~~~L~- 84 (994)
+.+|...+|||+ |||++|+||.+|++ +||++|++|+|+++|++|++||++||++|||..+|.
T Consensus 169 ~~~G~~~~~eL~-----p~G~~i~VT~~N~~------------eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~ 231 (358)
T 1c4z_A 169 DLFGNPMMYDLK-----ENGDKIPITNENRK------------EFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKY 231 (358)
T ss_dssp CTTTCCEEEESS-----TTTTTSBCCTTTHH------------HHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCS
T ss_pred ccCCCeeeeecC-----CCCcccccccccHH------------HHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcchhhc
Confidence 567888899995 88999999999999 999999999999999999999999999999999996
Q ss_pred CCCHHHHHHHHcCCCccChhhhhhcceeC-CccCCCcceeeEEEEe--cCcccccc---ccccccC
Q psy16327 85 YFDERELELILCGMQEIDVEDWQRNAIYR-HYTRNSKQTTRVVKNT--YQPKWNEE---FTVGGQG 144 (994)
Q Consensus 85 ~f~~~EL~~ll~G~~~id~~~l~~~t~y~-gy~~~s~~i~~fw~~f--~~~~e~~~---F~~~~~~ 144 (994)
+|+|+||+.||||.++||+++|++||+|+ ||+++|++|+|||++. |++++|+. |.++..|
T Consensus 232 lF~~~ELe~li~G~~~id~~~l~~~t~y~~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~r 297 (358)
T 1c4z_A 232 LFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDR 297 (358)
T ss_dssp CSSTHHHHHHHHCBCCCCCTTTSTTCEEESSCCSSCHHHHHHHHHHHTSCHHHHHHHHHHHSSSSS
T ss_pred CCCHHHHHHHhhcccCCCHHHHHHHceeCCCCCCCcchhhhHHHHHHhCCHHHHHHHHHHHcCCCC
Confidence 89999999999999999999999999999 7999999999999973 45555555 4454444
No 13
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=99.79 E-value=5.7e-20 Score=165.29 Aligned_cols=83 Identities=77% Similarity=1.385 Sum_probs=72.1
Q ss_pred ccccCCCCCCCceEEEcCCCceEEEecCCcccccCCCCcccccccccCCCCCCCCCCcceeeccCcceeeeccCCCcccc
Q psy16327 590 EDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTF 669 (994)
Q Consensus 590 ~~~~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~~~~~~~~~~~~~LP~gWe~~~~~~g~~yfv~hn~r~tt~ 669 (994)
+.+..++||+||+++++++|++||+||.|++++|++||......... ...+||.|||++.+.+|++|||||+++.|+|
T Consensus 6 ~~~~~~~LP~gWe~~~~~~Gr~Yy~n~~t~~t~W~~P~~~~~~~~~~--~~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw 83 (88)
T 1tk7_A 6 HMDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLI--NEGPLPPGWEIRYTAAGERFFVDHNTRRTTF 83 (88)
T ss_dssp CSSTTSSSSSSCCEEEETTTEEEEEETTTTEEEEESCCCTTTCCHHH--HSCSSCSSCEEEEETTTEEEEEETTTTEEES
T ss_pred CCCccCCCCCCcEEEECCCCCEEEEECCCCCeEeecccccccccccc--cccccCCceEEEECCCCCEEEEECCCCcEeC
Confidence 34556799999999999999999999999999999999765322111 3579999999999999999999999999999
Q ss_pred CCCCC
Q psy16327 670 EDPRP 674 (994)
Q Consensus 670 ~dPr~ 674 (994)
+|||+
T Consensus 84 ~~Prl 88 (88)
T 1tk7_A 84 EDPRP 88 (88)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 99985
No 14
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=99.78 E-value=3.8e-19 Score=160.61 Aligned_cols=82 Identities=45% Similarity=0.876 Sum_probs=68.3
Q ss_pred CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChhhhhcccccccccccccccCCccccCCCCCCCcCCCCccccCCCc
Q psy16327 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGV 587 (994)
Q Consensus 508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~~~~~~~~~~~~r~~~~~q~~~r~~~~~~~~~~~~~~~~~~~~~~ 587 (994)
..+||+||+++++++||+||+||.|++|+|++|+.... + .
T Consensus 7 ~~~LP~gWe~~~~~~Gr~YY~n~~t~~t~W~~P~~~~~------------~----------~------------------ 46 (90)
T 2kxq_A 7 PPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRD------------L----------S------------------ 46 (90)
T ss_dssp CCSCCSSCEEEEETTTEEEEEETTTTEEESSCSSSCSS------------S----------C------------------
T ss_pred CCCCCCCcEEEECCCCCEEEEECCCCeEeeeccccccc------------c----------c------------------
Confidence 34799999999999999999999999999999985310 0 0
Q ss_pred ccccccCCCCCCCceEEEcCCCceEEEecCCcccccCCCCcc
Q psy16327 588 TEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629 (994)
Q Consensus 588 ~~~~~~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~ 629 (994)
.......++||.||+++++.+|++|||||.|++|+|+|||..
T Consensus 47 ~~~~~~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~~ 88 (90)
T 2kxq_A 47 NINCEELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS 88 (90)
T ss_dssp SCCGGGTCCCCSSCCEEECTTSCEEEEETTTTEEESSCTTTS
T ss_pred ccCcccccccCCCceEEECCCCCEEEEECCCCcEecCCCCcC
Confidence 001123468999999999999999999999999999999974
No 15
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=99.77 E-value=5.9e-19 Score=159.34 Aligned_cols=81 Identities=44% Similarity=0.870 Sum_probs=69.7
Q ss_pred CCCCCCceEEEcCCCceEEEecCCcccccCCCCcccccccccCCCCCCCCCCcceeeccCcceeeeccCCCccccCCCCC
Q psy16327 595 GSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRP 674 (994)
Q Consensus 595 ~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~~~~~~~~~~~~~LP~gWe~~~~~~g~~yfv~hn~r~tt~~dPr~ 674 (994)
.+||+||+++++++|++||+||.|++|+|++|+..............+||.|||++.+.+|++|||||+++.|+|+|||.
T Consensus 8 ~~LP~gWe~~~~~~Gr~YY~n~~t~~t~W~~P~~~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~ 87 (90)
T 2kxq_A 8 PDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 87 (90)
T ss_dssp CSCCSSCEEEEETTTEEEEEETTTTEEESSCSSSCSSSCSCCGGGTCCCCSSCCEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCeEeeecccccccccccCcccccccCCCceEEECCCCCEEEEECCCCcEecCCCCc
Confidence 57999999999999999999999999999999975432111112357999999999999999999999999999999997
Q ss_pred C
Q psy16327 675 G 675 (994)
Q Consensus 675 ~ 675 (994)
.
T Consensus 88 ~ 88 (90)
T 2kxq_A 88 S 88 (90)
T ss_dssp S
T ss_pred C
Confidence 4
No 16
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=99.75 E-value=8.7e-19 Score=157.54 Aligned_cols=67 Identities=48% Similarity=1.073 Sum_probs=63.1
Q ss_pred CCCCCCCCceEeecCCCCeeeeeCCCCcccccCCC------------CCCCCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ------------PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 436 (994)
Q Consensus 370 ~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~------------~lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~ 436 (994)
...+||+||+++.+++||+|||||+|++|+|++|. +||.||+++.+.+|++|||||+|++|+|++|.
T Consensus 9 ~~~~LP~gWe~~~~~~Gr~Yy~n~~t~~t~W~~P~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 87 (88)
T 1tk7_A 9 ALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 87 (88)
T ss_dssp TTSSSSSSCCEEEETTTEEEEEETTTTEEEEESCCCTTTCCHHHHSCSSCSSCEEEEETTTEEEEEETTTTEEESSSSC
T ss_pred ccCCCCCCcEEEECCCCCEEEEECCCCCeEeecccccccccccccccccCCceEEEECCCCCEEEEECCCCcEeCCCCC
Confidence 34579999999999999999999999999999993 68999999999999999999999999999996
No 17
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=99.68 E-value=1.1e-17 Score=157.47 Aligned_cols=61 Identities=30% Similarity=0.408 Sum_probs=41.5
Q ss_pred eeccCC--CCCCCCCCCCCCCCcceeeeecCCCCCCcEEeccccccccCCCCCHHHHHHHHHHHHHcCCCCCC
Q psy16327 923 VCFSSL--PGHAVFPWEDLPNSWRFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQ 993 (994)
Q Consensus 923 s~r~P~--~Gf~~l~~~~~~~~~~f~i~~~~~~~~LP~A~TCfn~L~LP~Y~s~e~L~eKL~~AI~~~~GFg~ 993 (994)
++|+|+ +||+.| ++|+|.. +++++||+||||||+|+||+|+|+|+|++||++||++ +|||+
T Consensus 55 s~rlP~~~~Gf~~l--------~~~~i~~-~~~~~LP~A~TCfn~L~LP~Y~s~e~L~~kL~~AI~~-~gfGf 117 (118)
T 3pt3_A 55 SPSLPASEEGFQPM--------PSITIRP-PDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKT-KNFGF 117 (118)
T ss_dssp CC--------------------CEEEEES-CCTTSCCEEETTTTEEEEECCSSHHHHHHHHHHHHC-------
T ss_pred CCCCCCcccCcccC--------CcEEEEC-CCCCCCccceehhceeECCCCCCHHHHHHHHHHHHHh-CCcCC
Confidence 999999 899876 3688873 5678999999999999999999999999999999998 99997
No 18
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=99.66 E-value=9.1e-17 Score=145.53 Aligned_cols=68 Identities=25% Similarity=0.663 Sum_probs=62.9
Q ss_pred CCCCCCCCceEeecCCCCeeeeeCCCCcccccCCCC---------CCCCceeeeCCCCCeEEEeCCCCcccccCCch
Q psy16327 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQP---------LPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS 437 (994)
Q Consensus 370 ~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~---------lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~~ 437 (994)
...+||++|+++.+++||+||||+.|++|+|++|.. +|.+|+++.+.+||+||||+.|++|+|++|..
T Consensus 8 ~~~~lp~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~Yy~N~~T~~s~We~P~~ 84 (92)
T 2l5f_A 8 TASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKTYYYNSQTKESRWAKPKE 84 (92)
T ss_dssp STTBTTTTEEEEECTTSCEEEEETTTTEEESSCSGGGTCHHHHHHHSCSEEEEECTTCCEEEEETTTTEEESCCCHH
T ss_pred cCCCCCCCcEEEEcCCCCEEEEECCCCceecccCccccccccccccccceEEEECCCCCEEEEECCCCCeeccCchh
Confidence 345799999999999999999999999999999964 46899999999999999999999999999974
No 19
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=99.65 E-value=1.6e-16 Score=161.77 Aligned_cols=105 Identities=35% Similarity=0.567 Sum_probs=89.1
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCccc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCE 226 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~~ 226 (994)
+.++||||+|.+++ +++||+++++|+||+|||+|.|.+.+...|.|.|||+|.+++|++||.+.|+|.+++....+..+
T Consensus 54 ~~~sDPYv~v~~~~-~~~kT~v~~~tlnP~Wne~f~f~v~~~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~ 132 (173)
T 2nq3_A 54 WFGPSPYVEVTVDG-QSKKTEKCNNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLE 132 (173)
T ss_dssp CCCCCEEEEEEETT-EEEECCCCSSCSSCEEEEEEEEEECTTCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEES
T ss_pred CCCCCeEEEEEECC-EEeEccccCCCCCCeECCEEEEEeCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcc
Confidence 44599999999988 59999999999999999999999998889999999999999999999999999999987666665
Q ss_pred eEEEEeecCCC--CCCCCCeEEEecCCc
Q psy16327 227 HLEITLDLMND--SRVSPPLMSVEMPPL 252 (994)
Q Consensus 227 ~~~~~l~L~~~--~~~~~G~l~v~~~~~ 252 (994)
.+.++++|++. +....|+|.|.|++.
T Consensus 133 ~~~~~~~L~~~~~~~~~~G~L~v~l~~l 160 (173)
T 2nq3_A 133 EVVVTLQLGGDKEPTETIGDLSICLDGL 160 (173)
T ss_dssp SEEEEEEEEESSCTTSEEEEEEEEEESE
T ss_pred eeEEEEECccCCCCCcccEEEEEEEeee
Confidence 34455566544 334679999998764
No 20
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=99.60 E-value=3.4e-16 Score=136.66 Aligned_cols=61 Identities=36% Similarity=0.820 Sum_probs=58.1
Q ss_pred CCceEeecCCCCeeeeeCCCCcccccCCC---------CCCCCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327 376 PGWEIRQDTYGRRYYVDHNTRSSSWERPQ---------PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 436 (994)
Q Consensus 376 ~~w~~~~~~~G~~yy~n~~t~~t~w~~P~---------~lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~ 436 (994)
++|+++.+++||+|||||+|++|+|++|. .||.||+++.+++|++|||||.|++|+|++|.
T Consensus 2 ~~W~~~~~~~Gr~YY~n~~T~~s~W~~P~~~~~~~~~~~lp~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~ 71 (75)
T 1o6w_A 2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPA 71 (75)
T ss_dssp CCEEEEECTTCCEEEEETTTTEEESSCCHHHHHHHHHHHHHHTCEEEECTTCCEEEEETTTTEEESSCCC
T ss_pred CCCeEEECCCCCeEEEECCCCCEEeecchhhcccccccCCCCeEEEEECCCCCEEEEECCCCCEECCCCC
Confidence 57999999999999999999999999995 46889999999999999999999999999997
No 21
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=99.57 E-value=2.8e-15 Score=149.74 Aligned_cols=96 Identities=19% Similarity=0.195 Sum_probs=79.7
Q ss_pred CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhhhccc-CCccc
Q psy16327 148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHY-NGKCE 226 (994)
Q Consensus 148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~-~~~~~ 226 (994)
..+||||+|.+++++.+||+++++|+||+|||+|.|.|.+...|.|.|||+|.+++|++||.+.|+|.++.... .+...
T Consensus 58 g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~ 137 (157)
T 2fk9_A 58 QLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTF 137 (157)
T ss_dssp CCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEE
T ss_pred CCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcc
Confidence 45899999999877568999999999999999999999888899999999999999999999999999998652 22233
Q ss_pred eEEEEeecCCCCCCCCCeEEEecC
Q psy16327 227 HLEITLDLMNDSRVSPPLMSVEMP 250 (994)
Q Consensus 227 ~~~~~l~L~~~~~~~~G~l~v~~~ 250 (994)
. .+++|.. .|+|.|.+.
T Consensus 138 ~--~W~~L~~-----~G~i~l~l~ 154 (157)
T 2fk9_A 138 E--GWVDLEP-----EGKVFVVIT 154 (157)
T ss_dssp E--EEEECBS-----SCEEEEEEE
T ss_pred c--EEEECCC-----CcEEEEEEE
Confidence 4 4455542 788887664
No 22
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=99.55 E-value=3.9e-15 Score=129.66 Aligned_cols=62 Identities=26% Similarity=0.595 Sum_probs=58.2
Q ss_pred CCCceEeecCCCCeeeeeCCCCcccccCCCC---------CCCCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327 375 PPGWEIRQDTYGRRYYVDHNTRSSSWERPQP---------LPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 436 (994)
Q Consensus 375 p~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~---------lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~ 436 (994)
..+|+++.+++||+||||+.|++|+|++|.. ++.+|+++.+++|++||||+.|++|+|++|.
T Consensus 4 ~~~W~e~~~~~G~~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~ 74 (75)
T 2jxw_A 4 KGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETGESRWEKPD 74 (75)
T ss_dssp CCCEEEEEETTTEEEEEETTTTEEECSCCSSCSSCCSSSSCCCSEEEEEETTTEEEEEETTTTEEESSCCC
T ss_pred CCCcEEEECCCCCEEEEECCCCCEeecCCCcccccccccCCCccEEEEECCCCCEEEEECcCCCEeccCcC
Confidence 4689999999999999999999999999964 4789999999999999999999999999996
No 23
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=99.54 E-value=1.2e-14 Score=140.90 Aligned_cols=102 Identities=23% Similarity=0.356 Sum_probs=81.8
Q ss_pred CCCCCCeEEEeecc-CCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCC---CcccceEEeehhhhhcccC
Q psy16327 147 LLKPNPYIELYVDY-KNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRR---DCTIGEKRLNIYGVLAHYN 222 (994)
Q Consensus 147 f~~~dPyv~v~~~g-~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~---d~~lG~~~i~l~~~~~~~~ 222 (994)
+.++||||+|.+++ .+.+||+++++|+||+|||+|.|.+.....|.|.|||+|.+++ |+|||.+.|+|.++.+...
T Consensus 23 ~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~ 102 (132)
T 3pyc_A 23 FRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKD 102 (132)
T ss_dssp TCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTCCEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTT
T ss_pred CCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCCEEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccc
Confidence 46799999999976 4689999999999999999999998877789999999999986 8999999999999865543
Q ss_pred CccceEEEEeecCCCCC--CCCCeEEEecC
Q psy16327 223 GKCEHLEITLDLMNDSR--VSPPLMSVEMP 250 (994)
Q Consensus 223 ~~~~~~~~~l~L~~~~~--~~~G~l~v~~~ 250 (994)
... .++.|.....++ ...|+|.|.++
T Consensus 103 ~~~--~~~~L~~~~~~~~~~~~G~i~v~l~ 130 (132)
T 3pyc_A 103 TGY--QRLDLCKLNPSDTDAVRGQIVVSLQ 130 (132)
T ss_dssp SCC--EEEECBCSSTTCCCCCCSEEEEEEE
T ss_pred cCc--EEEeeeecCCCCCCceeEEEEEEEE
Confidence 333 334444432222 46899999874
No 24
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=99.52 E-value=4.3e-15 Score=129.65 Aligned_cols=72 Identities=32% Similarity=0.682 Sum_probs=61.9
Q ss_pred CCceEEeCCCCCeEEEeCCCCceeccCCChhhhhcccccccccccccccCCccccCCCCCCCcCCCCccccCCCcccccc
Q psy16327 513 PGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDD 592 (994)
Q Consensus 513 ~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~~~~~~~~~~~~r~~~~~q~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (994)
+||+++++++||+||+||.|++|+|++|+......
T Consensus 2 ~~W~~~~~~~Gr~YY~n~~T~~s~W~~P~~~~~~~--------------------------------------------- 36 (75)
T 1o6w_A 2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQE--------------------------------------------- 36 (75)
T ss_dssp CCEEEEECTTCCEEEEETTTTEEESSCCHHHHHHH---------------------------------------------
T ss_pred CCCeEEECCCCCeEEEECCCCCEEeecchhhcccc---------------------------------------------
Confidence 48999999999999999999999999998642210
Q ss_pred cCCCCCCCceEEEcCCCceEEEecCCcccccCCCCcc
Q psy16327 593 ALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629 (994)
Q Consensus 593 ~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~ 629 (994)
....||.||+++.+++|++||+||.|++++|++|+..
T Consensus 37 ~~~~lp~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~~~ 73 (75)
T 1o6w_A 37 ELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPAFE 73 (75)
T ss_dssp HHHHHHHTCEEEECTTCCEEEEETTTTEEESSCCCCC
T ss_pred cccCCCCeEEEEECCCCCEEEEECCCCCEECCCCCCC
Confidence 0124789999999999999999999999999999864
No 25
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=99.50 E-value=1.8e-14 Score=140.49 Aligned_cols=95 Identities=20% Similarity=0.197 Sum_probs=79.1
Q ss_pred CCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCccceE
Q psy16327 149 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCEHL 228 (994)
Q Consensus 149 ~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~~~~ 228 (994)
.+||||+|.+++....||+++++|+||+|||+|.|.+.....|.|.|||+|.+++|++||.+.|+|.++.....+ ....
T Consensus 37 ~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~-~~~~ 115 (136)
T 1gmi_A 37 LLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSR-HFED 115 (136)
T ss_dssp CCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCS-EEEE
T ss_pred CcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCCCEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCC-CccE
Confidence 389999999987756899999999999999999998877789999999999999999999999999999765322 2233
Q ss_pred EEEeecCCCCCCCCCeEEEecCC
Q psy16327 229 EITLDLMNDSRVSPPLMSVEMPP 251 (994)
Q Consensus 229 ~~~l~L~~~~~~~~G~l~v~~~~ 251 (994)
| ++|+ ..|+|.|.+..
T Consensus 116 w--~~L~-----~~G~i~l~l~~ 131 (136)
T 1gmi_A 116 W--IDLE-----PEGKVYVIIDL 131 (136)
T ss_dssp E--EECB-----SSCEEEEEEEE
T ss_pred E--EEcC-----CCeEEEEEEEE
Confidence 4 4554 27888887754
No 26
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=99.50 E-value=4.5e-14 Score=140.37 Aligned_cols=105 Identities=21% Similarity=0.378 Sum_probs=83.4
Q ss_pred CCCCCCeEEEeeccC-----CceeeeeecCCCCCCcceEEEEEecCC-CeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327 147 LLKPNPYIELYVDYK-----NPKTTRVVKNTYQPKWNEEFTVLVSPY-SIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 147 f~~~dPyv~v~~~g~-----~~~kT~v~k~tlnP~Wne~f~~~v~~~-~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~ 220 (994)
+.++||||+|.+++. +.+||+++++|+||+|||+|.|.+.+. ..|.|.|||+|.+++|++||.+.|+|.++...
T Consensus 38 ~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 117 (153)
T 3b7y_A 38 LGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTE 117 (153)
T ss_dssp ---CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBC
T ss_pred CCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccC
Confidence 457899999999752 478999999999999999999988754 58999999999999999999999999999765
Q ss_pred cCC---ccceEEEEeecCCCCCCCCCeEEEecCC
Q psy16327 221 YNG---KCEHLEITLDLMNDSRVSPPLMSVEMPP 251 (994)
Q Consensus 221 ~~~---~~~~~~~~l~L~~~~~~~~G~l~v~~~~ 251 (994)
... .....|+.|..........|+|.|.++.
T Consensus 118 ~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~ 151 (153)
T 3b7y_A 118 NPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTY 151 (153)
T ss_dssp CTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEE
T ss_pred CCcccccccccccccccccCCCCcceEEEEEEEE
Confidence 432 1234667666555445678999998864
No 27
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=131.60 Aligned_cols=76 Identities=21% Similarity=0.598 Sum_probs=64.8
Q ss_pred CCCCCCceEEeCCCCCeEEEeCCCCceeccCCChhhhhcccccccccccccccCCccccCCCCCCCcCCCCccccCCCcc
Q psy16327 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVT 588 (994)
Q Consensus 509 ~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~~~~~~~~~~~~r~~~~~q~~~r~~~~~~~~~~~~~~~~~~~~~~~ 588 (994)
.+||+||+++++++||+||+||.|++++|++|.......
T Consensus 10 ~~lp~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~~~~~~----------------------------------------- 48 (92)
T 2l5f_A 10 SGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPA----------------------------------------- 48 (92)
T ss_dssp TBTTTTEEEEECTTSCEEEEETTTTEEESSCSGGGTCHH-----------------------------------------
T ss_pred CCCCCCcEEEEcCCCCEEEEECCCCceecccCccccccc-----------------------------------------
Confidence 379999999999999999999999999999998532100
Q ss_pred cccccCCCCCCCceEEEcCCCceEEEecCCcccccCCCCcc
Q psy16327 589 EEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629 (994)
Q Consensus 589 ~~~~~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~ 629 (994)
...+||.+|+++.+.+|++||+||.|++++|++|+..
T Consensus 49 ----e~~~~~~~W~~~~~~~Gr~Yy~N~~T~~s~We~P~~~ 85 (92)
T 2l5f_A 49 ----EQLLSKCPWKEYKSDSGKTYYYNSQTKESRWAKPKEL 85 (92)
T ss_dssp ----HHHHHSCSEEEEECTTCCEEEEETTTTEEESCCCHHH
T ss_pred ----cccccccceEEEECCCCCEEEEECCCCCeeccCchhH
Confidence 0014678999999999999999999999999999864
No 28
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4.9e-14 Score=137.90 Aligned_cols=101 Identities=19% Similarity=0.275 Sum_probs=82.8
Q ss_pred CCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec-----CCCeEEEEEecCCCCCCCcccceEEeehhhhhcccC
Q psy16327 148 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN 222 (994)
Q Consensus 148 ~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~-----~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~ 222 (994)
.++||||+|.++++ ++||+++++++||+|||+|.|.+. ....|.|.|||+|.+++|++||.+.|+|.++...
T Consensus 25 g~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~-- 101 (140)
T 2dmh_A 25 GKPDPIVSVIFKDE-KKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGD-- 101 (140)
T ss_dssp SCCCEEEEEECSSC-EEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSS--
T ss_pred CCCCeEEEEEECCE-eEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccC--
Confidence 57999999999775 899999999999999999999886 3579999999999999999999999999998543
Q ss_pred CccceEEEE-eecCCCCC-CCCCeEEEecCCc
Q psy16327 223 GKCEHLEIT-LDLMNDSR-VSPPLMSVEMPPL 252 (994)
Q Consensus 223 ~~~~~~~~~-l~L~~~~~-~~~G~l~v~~~~~ 252 (994)
.....|+. +.|.+..+ ...|+|.|.+...
T Consensus 102 -~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~ 132 (140)
T 2dmh_A 102 -QSRSLPYKLISLLNEKGQDTGATIDLVIGYD 132 (140)
T ss_dssp -SCEEEEEEEEEEECTTCCEEEEEEEEEEEEC
T ss_pred -CCceeEEeeeeccCCCCCCCCCEEEEEEEEE
Confidence 22344555 44655443 4569999988764
No 29
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=99.49 E-value=3.3e-14 Score=137.99 Aligned_cols=99 Identities=15% Similarity=0.204 Sum_probs=80.8
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCcc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKC 225 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~~ 225 (994)
+.++||||+|.++++ ++||+++++++||+|||+|.|.+.+ ...|.|.|||+|.+++|++||.+.|+|.++... .
T Consensus 31 ~g~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~---~- 105 (133)
T 2ep6_A 31 SGKSDPFCLLELGND-RLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDG---Q- 105 (133)
T ss_dssp SSCCCEEEEEEETTE-EEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSS---C-
T ss_pred CCCcCeEEEEEECCE-EEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHccCC---C-
Confidence 467999999999775 8899999999999999999998865 568999999999999999999999999998542 2
Q ss_pred ceEEEEeecCCCCCCCCCeEEEecCC
Q psy16327 226 EHLEITLDLMNDSRVSPPLMSVEMPP 251 (994)
Q Consensus 226 ~~~~~~l~L~~~~~~~~G~l~v~~~~ 251 (994)
..|+.|......+...|+|.|.++.
T Consensus 106 -~~w~~L~~~~~~~~~~G~i~l~i~~ 130 (133)
T 2ep6_A 106 -PNCYVLKNKDLEQAFKGVIYLEMDL 130 (133)
T ss_dssp -CEECCCBCSCTTSCCSSEEEEEEEE
T ss_pred -ceEEEeecCCCCCccceEEEEEEEE
Confidence 3445444333344678999888753
No 30
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=99.48 E-value=4.9e-14 Score=137.18 Aligned_cols=100 Identities=18% Similarity=0.246 Sum_probs=82.4
Q ss_pred CCCCCCeEEEeeccCCceeeeeec-CCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVK-NTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK 224 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k-~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~ 224 (994)
+.++||||+|.++++ ++||++++ +++||+|||+|.|.+.+ ...|.|+|||+|.+++|++||.+.|+|.+++... .
T Consensus 28 ~g~~dpyv~v~~~~~-~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~--~ 104 (136)
T 1wfj_A 28 LNNMDPYVQLTCRTQ-DQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG--S 104 (136)
T ss_dssp SCSSCCCEEEESSSC-EEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHS--E
T ss_pred CCCcCceEEEEECCc-cceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCC--C
Confidence 467999999999775 78999998 99999999999998876 5699999999999999999999999999996542 2
Q ss_pred cceEEEEeecCCCCCCCCCeEEEecCCc
Q psy16327 225 CEHLEITLDLMNDSRVSPPLMSVEMPPL 252 (994)
Q Consensus 225 ~~~~~~~l~L~~~~~~~~G~l~v~~~~~ 252 (994)
....|+.|. .++...|+|.|.+...
T Consensus 105 ~~~~w~~L~---~~~~~~G~i~l~l~~~ 129 (136)
T 1wfj_A 105 IPPTAYNVV---KDEEYKGEIWVALSFK 129 (136)
T ss_dssp EEEEEEEEE---ETTEEEEEEEEEEEEE
T ss_pred CCcEEEEee---cCCccCEEEEEEEEEE
Confidence 334455544 3445689999988764
No 31
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=99.47 E-value=1e-13 Score=137.06 Aligned_cols=99 Identities=18% Similarity=0.278 Sum_probs=81.6
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEec-CCCeEEEEEecCCCC-----------CCCcccceEEeeh
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTF-----------RRDCTIGEKRLNI 214 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~-~~~~l~~~V~D~d~~-----------~~d~~lG~~~i~l 214 (994)
+.++||||+|.+++ +++||+++++|+||.|||+|.|.+. +...|.|.|||+|.+ ++|++||.+.|+|
T Consensus 35 ~g~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l 113 (148)
T 3kwu_A 35 TGSSDPYVTVQVGK-TKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEV 113 (148)
T ss_dssp TSCCCEEEEEEETT-EEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEG
T ss_pred CCCcCeEEEEEECC-EEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccccccccccCCCCccEEEEEEEH
Confidence 56799999999955 5899999999999999999999885 456999999999986 8899999999999
Q ss_pred hhhhcccCCccceEEEEeecCCCCCCCCCeEEEecCC
Q psy16327 215 YGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEMPP 251 (994)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~L~~~~~~~~G~l~v~~~~ 251 (994)
.++. .....|+.|..........|+|.|.++.
T Consensus 114 ~~l~-----~~~~~w~~L~~~~~~~~~~G~i~l~l~~ 145 (148)
T 3kwu_A 114 RTLS-----GEMDVWYNLDKRTDKSAVSGAIRLHISV 145 (148)
T ss_dssp GGCC-----SEEEEEEECBCSSTTCCCCCEEEEEEEE
T ss_pred HHCc-----CCCCEEEEcccCCCCCCCceEEEEEEEE
Confidence 9982 1234566666555555678999988764
No 32
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=99.45 E-value=1.1e-13 Score=141.11 Aligned_cols=107 Identities=22% Similarity=0.374 Sum_probs=82.3
Q ss_pred CCCCCCeEEEeeccC-----CceeeeeecCCCCCCcceEEEEEecCC-CeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327 147 LLKPNPYIELYVDYK-----NPKTTRVVKNTYQPKWNEEFTVLVSPY-SIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 147 f~~~dPyv~v~~~g~-----~~~kT~v~k~tlnP~Wne~f~~~v~~~-~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~ 220 (994)
+.++||||+|.+++. +++||+++++++||.|||.|.|.+.+. ..|.|.|||+|++++|+|||.+.|+|.++...
T Consensus 26 ~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~ 105 (176)
T 3m7f_B 26 LGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTE 105 (176)
T ss_dssp CCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC----CEEEEEEEEESCSCCBC
T ss_pred CCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECCCCCCCcEEEEEEEEHHHcccc
Confidence 467999999999763 367999999999999999999988765 59999999999999999999999999999765
Q ss_pred cCC---ccceEEEEeecCCCCCCCCCeEEEecCCcC
Q psy16327 221 YNG---KCEHLEITLDLMNDSRVSPPLMSVEMPPLL 253 (994)
Q Consensus 221 ~~~---~~~~~~~~l~L~~~~~~~~G~l~v~~~~~~ 253 (994)
... .....|+.|..+.......|+|.|.+....
T Consensus 106 ~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p 141 (176)
T 3m7f_B 106 NPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 141 (176)
T ss_dssp ------CCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred CCcccccccccEEEccccCCCCccCEEEEEEEEEEe
Confidence 322 111256777666666667899999997753
No 33
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=99.43 E-value=2.1e-13 Score=130.73 Aligned_cols=94 Identities=23% Similarity=0.503 Sum_probs=74.5
Q ss_pred CCCCCCeEEEeecc--CCceeeeeecCCCCCCcceEEEEEec--CCCeEEEEEecCCCCCCCcccceEEeehhhhhcccC
Q psy16327 147 LLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN 222 (994)
Q Consensus 147 f~~~dPyv~v~~~g--~~~~kT~v~k~tlnP~Wne~f~~~v~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~ 222 (994)
+.++||||+|.+++ .+++||+++++++||+|||+|.|.+. ....|.|.|||+|.++ |++||.+.|+|+++..
T Consensus 24 ~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~~~-~~~iG~~~i~l~~l~~--- 99 (126)
T 1rlw_A 24 LDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKV--- 99 (126)
T ss_dssp HCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSSC-CEEEEEEEEEGGGSCT---
T ss_pred CCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCCCC-CceeEEEEEEHHHccC---
Confidence 46799999999986 46899999999999999999999884 3569999999999985 8899999999999853
Q ss_pred CccceEEEEeecCCCCCCCCCeEEEec
Q psy16327 223 GKCEHLEITLDLMNDSRVSPPLMSVEM 249 (994)
Q Consensus 223 ~~~~~~~~~l~L~~~~~~~~G~l~v~~ 249 (994)
+.... .+++|.. ...|+|.|.+
T Consensus 100 ~~~~~--~~~~L~~---~~~g~i~~~l 121 (126)
T 1rlw_A 100 GEKKE--VPFIFNQ---VTEMVLEMSL 121 (126)
T ss_dssp TCEEE--EEEEETT---TEEEEEEEEE
T ss_pred CCcEE--EEEEcCC---CceEEEEEEE
Confidence 23333 4555553 3345666655
No 34
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=99.41 E-value=1.2e-13 Score=133.13 Aligned_cols=103 Identities=14% Similarity=0.185 Sum_probs=89.6
Q ss_pred CCCCCeEEEeeccCCceeeeeec-CCCCCCcceEEEEEec----CCCeEEEEEecCCCCCCCcccceEEeehhhhhcccC
Q psy16327 148 LKPNPYIELYVDYKNPKTTRVVK-NTYQPKWNEEFTVLVS----PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYN 222 (994)
Q Consensus 148 ~~~dPyv~v~~~g~~~~kT~v~k-~tlnP~Wne~f~~~v~----~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~ 222 (994)
.++||||+|.+.|. ++||++++ +++||+|||.|++.+. ..+.|.|.|+|++++++|.+||++.|+|.+|....
T Consensus 35 g~~Dp~akv~FRg~-k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~- 112 (144)
T 3l9b_A 35 GRADRIAKVTFRGQ-SFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEEN- 112 (144)
T ss_dssp SCEEEEEEEEETTE-EEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHHS-
T ss_pred CCCCCeEEEEEecc-ceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccCC-
Confidence 47999999999887 99999998 6999999999999664 46799999999999999999999999999998873
Q ss_pred CccceEEEEeecCCCCCCCC-CeEEEecCCcCCCC
Q psy16327 223 GKCEHLEITLDLMNDSRVSP-PLMSVEMPPLLRNN 256 (994)
Q Consensus 223 ~~~~~~~~~l~L~~~~~~~~-G~l~v~~~~~~~~~ 256 (994)
.++++..|.+.+.... ++|.+++++.+++|
T Consensus 113 ----~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp~g 143 (144)
T 3l9b_A 113 ----RVEVSDTLIDDNNAIIKTSLSMEVRYQAADG 143 (144)
T ss_dssp ----EEEEEEEEECTTSCEEEEEEEEEEEEEETTC
T ss_pred ----eEEEeecccCCCCCccccEEEEEEEecCCCC
Confidence 4557788888887654 68999999877655
No 35
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=99.41 E-value=3.4e-13 Score=117.35 Aligned_cols=71 Identities=20% Similarity=0.471 Sum_probs=59.8
Q ss_pred CCCceeeeCCCCCeEEEeCCCCcccccCCchhhhhhccccccccccccccCCccccCCCCCcCCCCCCccccCCCccccc
Q psy16327 407 PPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEED 486 (994)
Q Consensus 407 p~gW~~~~~~~g~~yy~n~~t~~t~w~~P~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (994)
..+|+++.+++|++||||+.|++|+|++|.... .+
T Consensus 4 ~~~W~e~~~~~G~~YYyN~~T~~s~We~P~~~~-----------------------~~---------------------- 38 (75)
T 2jxw_A 4 KGRWVEGITSEGYHYYYDLISGASQWEKPEGFQ-----------------------GD---------------------- 38 (75)
T ss_dssp CCCEEEEEETTTEEEEEETTTTEEECSCCSSCS-----------------------SC----------------------
T ss_pred CCCcEEEECCCCCEEEEECCCCCEeecCCCccc-----------------------cc----------------------
Confidence 468999999999999999999999999997210 00
Q ss_pred ccccCceeeeccCCCCCCCCCCCCCCCCceEEeCCCCCeEEEeCCCCceeccCCC
Q psy16327 487 ADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 541 (994)
Q Consensus 487 ~~~~g~~~~~~~~t~~~~~~~~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~ 541 (994)
....++|.+|+++.+++||+||+|+.|++++|++|+
T Consensus 39 -------------------~e~~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~ 74 (75)
T 2jxw_A 39 -------------------LKKTAVKTVWVEGLSEDGFTYYYNTETGESRWEKPD 74 (75)
T ss_dssp -------------------CSSSSCCCSEEEEEETTTEEEEEETTTTEEESSCCC
T ss_pred -------------------ccccCCCccEEEEECCCCCEEEEECcCCCEeccCcC
Confidence 001257899999999999999999999999999996
No 36
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.38 E-value=3.5e-13 Score=131.81 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=64.1
Q ss_pred CCCCCCeEEEee---ccCCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327 147 LLKPNPYIELYV---DYKNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVL 218 (994)
Q Consensus 147 f~~~dPyv~v~~---~g~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~ 218 (994)
..++||||+|.+ ++..++||+|+++|+||+|||+|.|.+.. ...|.|.|||+|++++|++||++.|+|.++.
T Consensus 41 ~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~ 119 (138)
T 1wfm_A 41 DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTS 119 (138)
T ss_dssp SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSS
T ss_pred CCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEccccc
Confidence 567999999999 34446899999999999999999998864 3589999999999999999999999999984
No 37
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=99.32 E-value=2.7e-12 Score=124.78 Aligned_cols=73 Identities=21% Similarity=0.355 Sum_probs=64.3
Q ss_pred CCCCCCeEEEeec----cCCceeeeeecCCCCCCcceEEEEE-ec----CCCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327 147 LLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVL-VS----PYSIILFRLLDHRTFRRDCTIGEKRLNIYGV 217 (994)
Q Consensus 147 f~~~dPyv~v~~~----g~~~~kT~v~k~tlnP~Wne~f~~~-v~----~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~ 217 (994)
..++||||+|.+. +..++||+++++|+||+|||+|.|. +. ....|.|.|||+|.+++|++||.+.|+|.++
T Consensus 37 ~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l 116 (134)
T 2b3r_A 37 GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDF 116 (134)
T ss_dssp SCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGS
T ss_pred CCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhc
Confidence 4578999999982 2457899999999999999999998 65 3479999999999999999999999999998
Q ss_pred hc
Q psy16327 218 LA 219 (994)
Q Consensus 218 ~~ 219 (994)
..
T Consensus 117 ~~ 118 (134)
T 2b3r_A 117 NL 118 (134)
T ss_dssp CT
T ss_pred cC
Confidence 54
No 38
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=3e-12 Score=125.39 Aligned_cols=84 Identities=25% Similarity=0.430 Sum_probs=68.9
Q ss_pred CCCCCCeEEEeec--cCCceeeeeecCCCCCCcceEEEEEecC-----CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327 147 LLKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVLVSP-----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 147 f~~~dPyv~v~~~--g~~~~kT~v~k~tlnP~Wne~f~~~v~~-----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
+.++||||+|.+. +.+++||+++++|+||+|||+|.|.+.+ ...|.|.|||+|++++|++||.+.|+|.++..
T Consensus 44 ~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~ 123 (141)
T 2d8k_A 44 SGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL 123 (141)
T ss_dssp SSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCT
T ss_pred CCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcC
Confidence 4579999999994 3558899999999999999999997532 57899999999999999999999999999855
Q ss_pred ccCCccceEEEEee
Q psy16327 220 HYNGKCEHLEITLD 233 (994)
Q Consensus 220 ~~~~~~~~~~~~l~ 233 (994)
. .....|+.|.
T Consensus 124 ~---~~~~~W~~L~ 134 (141)
T 2d8k_A 124 T---QMQTFWKDLK 134 (141)
T ss_dssp T---SCEEEEECCE
T ss_pred C---CCccEEEECc
Confidence 3 2334444443
No 39
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=99.31 E-value=7.4e-13 Score=132.26 Aligned_cols=72 Identities=15% Similarity=0.057 Sum_probs=64.2
Q ss_pred CCCCCCeEEEeecc-----CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327 147 LLKPNPYIELYVDY-----KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGV 217 (994)
Q Consensus 147 f~~~dPyv~v~~~g-----~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~ 217 (994)
..++||||+|.+.+ ..++||+++++|+||+|||+|.|.+.. ...|.|.|||+|++++|++||++.|+|.++
T Consensus 61 ~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l 140 (155)
T 2z0u_A 61 QQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEV 140 (155)
T ss_dssp SCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTS
T ss_pred CCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHc
Confidence 46799999999954 126899999999999999999998864 468999999999999999999999999998
Q ss_pred h
Q psy16327 218 L 218 (994)
Q Consensus 218 ~ 218 (994)
.
T Consensus 141 ~ 141 (155)
T 2z0u_A 141 C 141 (155)
T ss_dssp C
T ss_pred c
Confidence 5
No 40
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.31 E-value=1.7e-12 Score=125.86 Aligned_cols=71 Identities=14% Similarity=0.239 Sum_probs=59.5
Q ss_pred CCCCCCeEEEeeccCCceeeeee-cCCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhccc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVV-KNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHY 221 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~-k~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~ 221 (994)
..++||||+|. ++ ..||+++ ++++||+|||+|.|.+.. ...|.|+|||+| +.+|++||.+.|+|.++....
T Consensus 20 ~g~~DPYv~v~--~~-~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~~ 92 (131)
T 2cjt_A 20 QEKFNTYVTLK--VQ-NVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSN 92 (131)
T ss_dssp GGGCEEEEEEE--ET-TEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEEEEEEEEEGGGSCBCS
T ss_pred CCCcCeEEEEE--ec-CEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCeEEEEEEEHHHhhhcC
Confidence 34689999999 33 5566555 479999999999998864 468999999999 999999999999999987543
No 41
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=2.6e-12 Score=126.77 Aligned_cols=73 Identities=27% Similarity=0.501 Sum_probs=64.9
Q ss_pred CCCCCCeEEEeecc--CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327 147 LLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 147 f~~~dPyv~v~~~g--~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
+.++||||+|.+.. .+++||+++++|+||+|||+|.|.+.. ...|.|.|||+|.+++|++||.+.|+|.++..
T Consensus 51 ~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~ 129 (147)
T 2enp_A 51 MAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDL 129 (147)
T ss_dssp TCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCT
T ss_pred CCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCC
Confidence 45799999999953 458899999999999999999998864 35899999999999999999999999999854
No 42
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.31 E-value=3.1e-12 Score=126.57 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=66.3
Q ss_pred CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecC---CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327 147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP---YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~---~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
+.++||||+|.+.+ ..++||+++++|+||+|||+|.|.+.. ...|.|.|||+|.+++|++||.+.|+|.++..
T Consensus 49 ~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~ 128 (149)
T 1a25_A 49 NGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQK 128 (149)
T ss_dssp TSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTT
T ss_pred CCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCc
Confidence 56799999999974 558999999999999999999998865 35899999999999999999999999999965
Q ss_pred c
Q psy16327 220 H 220 (994)
Q Consensus 220 ~ 220 (994)
.
T Consensus 129 ~ 129 (149)
T 1a25_A 129 A 129 (149)
T ss_dssp C
T ss_pred C
Confidence 3
No 43
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=99.31 E-value=2.2e-12 Score=126.60 Aligned_cols=73 Identities=26% Similarity=0.411 Sum_probs=64.8
Q ss_pred CCCCCCeEEEee--ccCCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327 147 LLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 147 f~~~dPyv~v~~--~g~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
+.++||||+|.+ ++.+++||+++++|+||+|||+|.|.+.. ...|.|.|||+|.+++|++||++.|+|.++..
T Consensus 52 ~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~ 130 (143)
T 3f04_A 52 GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF 130 (143)
T ss_dssp GBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCT
T ss_pred CCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccC
Confidence 457999999999 34568999999999999999999998763 37999999999999999999999999999843
No 44
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.29 E-value=5.1e-12 Score=123.46 Aligned_cols=73 Identities=29% Similarity=0.454 Sum_probs=63.9
Q ss_pred CCCCCCeEEEeec----cCCceeeeeecCCCCCCcceEEEEEe-cC----CCeEEEEEecCCCCCC--CcccceEEeehh
Q psy16327 147 LLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLV-SP----YSIILFRLLDHRTFRR--DCTIGEKRLNIY 215 (994)
Q Consensus 147 f~~~dPyv~v~~~----g~~~~kT~v~k~tlnP~Wne~f~~~v-~~----~~~l~~~V~D~d~~~~--d~~lG~~~i~l~ 215 (994)
+.++||||+|.+. +.+++||+++++|+||+|||+|.|.+ .. ...|.|.|||+|.+++ |++||.+.|+|.
T Consensus 39 ~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~ 118 (141)
T 1v27_A 39 GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 118 (141)
T ss_dssp SCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGG
T ss_pred CCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEcc
Confidence 4678999999992 45689999999999999999999974 32 3699999999999987 999999999999
Q ss_pred hhhc
Q psy16327 216 GVLA 219 (994)
Q Consensus 216 ~~~~ 219 (994)
++..
T Consensus 119 ~l~~ 122 (141)
T 1v27_A 119 TALL 122 (141)
T ss_dssp GCCC
T ss_pred ccCC
Confidence 9865
No 45
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.29 E-value=3.3e-12 Score=124.61 Aligned_cols=85 Identities=26% Similarity=0.495 Sum_probs=69.1
Q ss_pred CCCCCeEEEeec--cCCceeeeeecCCCCCCcceEEEEE-ecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327 148 LKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVL-VSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 148 ~~~dPyv~v~~~--g~~~~kT~v~k~tlnP~Wne~f~~~-v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~ 220 (994)
.++||||+|.+. +.+++||+++++|+||+|||+|.|. +.. ...|.|.|||+|.+++|++||.+.|+|.++...
T Consensus 42 ~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~ 121 (138)
T 1ugk_A 42 MTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121 (138)
T ss_dssp TBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCT
T ss_pred CCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCC
Confidence 569999999995 3568999999999999999999994 653 359999999999999999999999999998543
Q ss_pred cCCccceEEEEeecCC
Q psy16327 221 YNGKCEHLEITLDLMN 236 (994)
Q Consensus 221 ~~~~~~~~~~~l~L~~ 236 (994)
. + ....+++|++
T Consensus 122 ~-~---~~~~~~~l~~ 133 (138)
T 1ugk_A 122 E-G---KMLMNREIIS 133 (138)
T ss_dssp T-C---CEEEEEECBS
T ss_pred C-C---cchhhhhhhc
Confidence 2 1 2234555554
No 46
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=99.29 E-value=2.4e-12 Score=126.14 Aligned_cols=74 Identities=24% Similarity=0.399 Sum_probs=64.8
Q ss_pred CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEE-ecC----CCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327 147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVL-VSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGV 217 (994)
Q Consensus 147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~-v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~ 217 (994)
..++||||+|.+.+ ..++||+++++|+||+|||+|.|. +.. ...|.|.|||+|.+++|++||.+.|+|.++
T Consensus 47 ~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l 126 (142)
T 2chd_A 47 NGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 126 (142)
T ss_dssp TSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGC
T ss_pred CCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHc
Confidence 45789999999965 357899999999999999999997 543 368999999999999999999999999998
Q ss_pred hcc
Q psy16327 218 LAH 220 (994)
Q Consensus 218 ~~~ 220 (994)
...
T Consensus 127 ~~~ 129 (142)
T 2chd_A 127 KAN 129 (142)
T ss_dssp CTT
T ss_pred CCC
Confidence 543
No 47
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.28 E-value=6.1e-12 Score=124.91 Aligned_cols=73 Identities=25% Similarity=0.371 Sum_probs=64.9
Q ss_pred CCCCCCeEEEeec--cCCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327 147 LLKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 147 f~~~dPyv~v~~~--g~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
+.++||||+|.+. +.+++||+++++|+||+|||+|.|.+.. ...|.|.|||+|.+++|++||.+.|+|.++..
T Consensus 60 ~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~ 138 (152)
T 1rsy_A 60 GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF 138 (152)
T ss_dssp TSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCC
T ss_pred CCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccC
Confidence 4678999999994 4568899999999999999999998763 57999999999999999999999999999843
No 48
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.28 E-value=2.6e-12 Score=123.67 Aligned_cols=82 Identities=28% Similarity=0.394 Sum_probs=63.4
Q ss_pred CCCCCCeEEEeec----cCCceeeeeecCCCCCCcceEEEEEe-c----CCCeEEEEEecCCCCCC--CcccceEEeehh
Q psy16327 147 LLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLV-S----PYSIILFRLLDHRTFRR--DCTIGEKRLNIY 215 (994)
Q Consensus 147 f~~~dPyv~v~~~----g~~~~kT~v~k~tlnP~Wne~f~~~v-~----~~~~l~~~V~D~d~~~~--d~~lG~~~i~l~ 215 (994)
+.++||||+|.+. +..++||+++++|+||+|||+|.|.+ . ....|.|.|||+|.+++ |++||.+.|+|.
T Consensus 36 ~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~ 115 (129)
T 2bwq_A 36 GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 115 (129)
T ss_dssp SCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGG
T ss_pred CCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEcc
Confidence 4578999999992 35589999999999999999999974 3 24699999999999987 999999999999
Q ss_pred hhhcccCCccceEEEEe
Q psy16327 216 GVLAHYNGKCEHLEITL 232 (994)
Q Consensus 216 ~~~~~~~~~~~~~~~~l 232 (994)
++.... ...|+.|
T Consensus 116 ~l~~~~----~~~W~~L 128 (129)
T 2bwq_A 116 TALLDD----EPHWYKL 128 (129)
T ss_dssp GCCCSS----CEEEEEC
T ss_pred ccCCCc----CCccEEC
Confidence 986531 4455544
No 49
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=99.27 E-value=5.8e-12 Score=122.41 Aligned_cols=74 Identities=20% Similarity=0.413 Sum_probs=65.9
Q ss_pred CCCCCCeEEEeec----cCCceeeeeecCCCCCCcceEEEEEecCC---CeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327 147 LLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLVSPY---SIILFRLLDHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 147 f~~~dPyv~v~~~----g~~~~kT~v~k~tlnP~Wne~f~~~v~~~---~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
+.++||||+|.+. +..++||+++++++||.|||.|.|.+... ..|.|.|||+|.+++|++||.+.|+|+++..
T Consensus 34 ~~~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~l~i~v~d~d~~~~~~~iG~~~i~l~~l~~ 113 (137)
T 3rdl_A 34 NGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMK 113 (137)
T ss_dssp TSCCCEEEEEEEECCTTCCCCEECCCCCSCSSCEEEEEEEEECCGGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHHH
T ss_pred CCCCCeeEEEEEEcCCCCCeeecCceEcCCCCCCcccEEEEEcCchhcCCEEEEEEEECCCCCCCceEEEEEEeHHHhcc
Confidence 5679999999995 35589999999999999999999988542 4899999999999999999999999999976
Q ss_pred c
Q psy16327 220 H 220 (994)
Q Consensus 220 ~ 220 (994)
.
T Consensus 114 ~ 114 (137)
T 3rdl_A 114 M 114 (137)
T ss_dssp S
T ss_pred C
Confidence 4
No 50
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=99.27 E-value=1.9e-13 Score=124.66 Aligned_cols=62 Identities=39% Similarity=0.652 Sum_probs=56.2
Q ss_pred CCCCCceEEEcCCCceEEEecCCcccccCCCCcccccccccCCCCCCCCCCcceeeccCcceeeeccCCCccccCCCCCC
Q psy16327 596 SLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPG 675 (994)
Q Consensus 596 ~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~~~~~~~~~~~~~LP~gWe~~~~~~g~~yfv~hn~r~tt~~dPr~~ 675 (994)
..|.|||++.++.|+||||||.+. ...+||+|||+++|.+|++|||||++++|+|+|||.+
T Consensus 45 r~p~~we~~~~~~~lV~~vn~~~d-------------------~~~pLP~GWE~r~d~~Gr~YfIdH~tktTtW~dPRl~ 105 (109)
T 3l4h_A 45 RDARNFERYQHNRDLVNFINMFAD-------------------TRLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIP 105 (109)
T ss_dssp HCTHHHHHHTTCHHHHHHHHTTCC-------------------TTSCCCTTEEEEECTTCCEEEEETTTTEEESSCSCCS
T ss_pred cCCcChhhhcCcCCceEEeccCCC-------------------CCCCCCCCCeEEECCCCCEEEEeCCCCCEeeCCCCcc
Confidence 468999999999999999999852 2468999999999999999999999999999999985
Q ss_pred C
Q psy16327 676 V 676 (994)
Q Consensus 676 ~ 676 (994)
.
T Consensus 106 ~ 106 (109)
T 3l4h_A 106 L 106 (109)
T ss_dssp C
T ss_pred c
Confidence 4
No 51
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=99.27 E-value=3.7e-12 Score=125.88 Aligned_cols=74 Identities=19% Similarity=0.395 Sum_probs=64.8
Q ss_pred CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecCC----CeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327 147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIYGVL 218 (994)
Q Consensus 147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~ 218 (994)
..++||||+|.+.+ ..++||+++++|+||+|||+|.|.+... ..|.|.|||+|.+++|++||.+.|+|.++.
T Consensus 42 ~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~ 121 (148)
T 3fdw_A 42 KKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWK 121 (148)
T ss_dssp TTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHH
T ss_pred CCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEccccc
Confidence 46799999999963 2368999999999999999999988753 369999999999999999999999999996
Q ss_pred cc
Q psy16327 219 AH 220 (994)
Q Consensus 219 ~~ 220 (994)
..
T Consensus 122 ~~ 123 (148)
T 3fdw_A 122 LD 123 (148)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 52
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=99.26 E-value=7.8e-12 Score=101.82 Aligned_cols=50 Identities=38% Similarity=0.845 Sum_probs=43.1
Q ss_pred ccccCCCCCCCceEEEcCCCceEEEecCCcccccCCCCcccccccccCCCCCCCCCC
Q psy16327 590 EDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPG 646 (994)
Q Consensus 590 ~~~~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~~~~~~~~~~~~~LP~g 646 (994)
+.+..++||+|||++++.+|++|||||.|++|+|+|||.... ...+||.|
T Consensus 8 ~~~~~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr~~~~-------~~~plp~g 57 (57)
T 2ysd_A 8 AEDNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNK-------QQSGPSSG 57 (57)
T ss_dssp CCSCCCSCCSSEEEEECSSCCEEEEETTTTEEESSCTTTCSS-------CCCSCCCC
T ss_pred CCCCCCCCCcCcEEEECCCCCEEEEECCCCcEecCCCCCccc-------cCCCCCCC
Confidence 345667999999999999999999999999999999998654 24688876
No 53
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=99.25 E-value=6.5e-12 Score=124.92 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=63.4
Q ss_pred CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEec---CCCeEEEEEecCCCCCC-CcccceEEeehhhhh
Q psy16327 147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS---PYSIILFRLLDHRTFRR-DCTIGEKRLNIYGVL 218 (994)
Q Consensus 147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~---~~~~l~~~V~D~d~~~~-d~~lG~~~i~l~~~~ 218 (994)
..++||||+|.+.+ ..++||+++++|+||+|||+|.|.+. ....|.|.|||+|.+.+ |++||.+.|+|.++.
T Consensus 44 ~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~ 123 (153)
T 3fbk_A 44 PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLL 123 (153)
T ss_dssp SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHT
T ss_pred CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhc
Confidence 35789999999942 45799999999999999999999883 23579999999999987 999999999999996
Q ss_pred c
Q psy16327 219 A 219 (994)
Q Consensus 219 ~ 219 (994)
.
T Consensus 124 ~ 124 (153)
T 3fbk_A 124 T 124 (153)
T ss_dssp C
T ss_pred C
Confidence 4
No 54
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.24 E-value=3.2e-12 Score=125.25 Aligned_cols=84 Identities=15% Similarity=0.237 Sum_probs=68.8
Q ss_pred CCCCCCeEEEeeccC-------------CceeeeeecCCCCCCcceEEEEE-ec----CCCeEEEEEecCCCCCCCcccc
Q psy16327 147 LLKPNPYIELYVDYK-------------NPKTTRVVKNTYQPKWNEEFTVL-VS----PYSIILFRLLDHRTFRRDCTIG 208 (994)
Q Consensus 147 f~~~dPyv~v~~~g~-------------~~~kT~v~k~tlnP~Wne~f~~~-v~----~~~~l~~~V~D~d~~~~d~~lG 208 (994)
+.++||||+|.+.+. .++||+++++|+||+|||+|.|. +. ....|.|.|||+|.+++|++||
T Consensus 36 ~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG 115 (142)
T 1rh8_A 36 NGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLG 115 (142)
T ss_dssp SSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEE
T ss_pred CCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEE
Confidence 567999999999764 25799999999999999999996 54 3569999999999999999999
Q ss_pred eEEeehhhhhcccCCccceEEEEee
Q psy16327 209 EKRLNIYGVLAHYNGKCEHLEITLD 233 (994)
Q Consensus 209 ~~~i~l~~~~~~~~~~~~~~~~~l~ 233 (994)
.+.|+|.++.... ....|+.|.
T Consensus 116 ~~~i~l~~l~~~~---~~~~W~~L~ 137 (142)
T 1rh8_A 116 EVLIDLSSTSHLD---NTPRWYPLK 137 (142)
T ss_dssp EEEEETTSCGGGT---TCCEEEECB
T ss_pred EEEEeccccccCC---CCCeEEECC
Confidence 9999999986532 234455443
No 55
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=99.24 E-value=8.4e-12 Score=125.82 Aligned_cols=71 Identities=23% Similarity=0.306 Sum_probs=64.0
Q ss_pred CCCCCCeEEEeecc----CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327 147 LLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGV 217 (994)
Q Consensus 147 f~~~dPyv~v~~~g----~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~ 217 (994)
+.++||||+|.+.+ ..++||+++++|+||+|||+|.|.+.. ...|.|.|||+|.+++|++||.+.|+|.++
T Consensus 55 ~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~ 133 (166)
T 2cm5_A 55 NGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133 (166)
T ss_dssp TSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred CCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccC
Confidence 46799999999976 358899999999999999999998864 459999999999999999999999999885
No 56
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=99.24 E-value=5.7e-12 Score=127.85 Aligned_cols=73 Identities=19% Similarity=0.378 Sum_probs=64.1
Q ss_pred CCCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEecC-CCeEEEEEe-cCCCCCCCcccceEEeehhhhhc
Q psy16327 147 LLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLL-DHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 147 f~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~~-~~~l~~~V~-D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
+.++||||+|.+.+. .++||+++++|+||+|||+|.|.+.. ...|.|.|| |+|++++|++||.+.|+|.++..
T Consensus 49 ~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~ 127 (171)
T 2q3x_A 49 KSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDL 127 (171)
T ss_dssp -CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCT
T ss_pred CCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHccc
Confidence 467999999999653 27899999999999999999998754 459999999 99999999999999999999853
No 57
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.23 E-value=5.1e-12 Score=99.81 Aligned_cols=46 Identities=26% Similarity=0.560 Sum_probs=42.2
Q ss_pred cccccCCCCcccccccccCCCCCCCCCCcceeeccCcceeeeccCCCccccCCCCCC
Q psy16327 619 RTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPG 675 (994)
Q Consensus 619 ~~t~w~dPr~~~~~~~~~~~~~~~LP~gWe~~~~~~g~~yfv~hn~r~tt~~dPr~~ 675 (994)
++|+|+|||. ..+||+|||++.|.+|++|||||++++|+|+||+..
T Consensus 1 ~tt~W~~P~~-----------~~~LP~GWe~~~d~~g~~YYvnh~t~~T~We~P~~~ 46 (49)
T 2dwv_A 1 GSSGSSGPLE-----------REGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGP 46 (49)
T ss_dssp CCSSSCCSCC-----------SSCCCTTEEEEEETTTEEEEEETTTTEEESSCCCCC
T ss_pred CeecCcCCCC-----------CCCCCcCcEEEECCCCCEEEEECCCCCEeccCcCCC
Confidence 4789999985 368999999999999999999999999999999874
No 58
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=6.4e-12 Score=123.12 Aligned_cols=87 Identities=21% Similarity=0.263 Sum_probs=67.6
Q ss_pred CCCeEEEeec--cC--CceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCC--CcccceEEeehhhhhc
Q psy16327 150 PNPYIELYVD--YK--NPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRR--DCTIGEKRLNIYGVLA 219 (994)
Q Consensus 150 ~dPyv~v~~~--g~--~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~--d~~lG~~~i~l~~~~~ 219 (994)
+||||+|.+. +. .++||+++++|+||+|||+|.|.+.. ...|.|.|||+|.+.+ |++||.+.|+|.++..
T Consensus 44 ~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~ 123 (142)
T 2dmg_A 44 SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEEL 123 (142)
T ss_dssp CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTT
T ss_pred CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccc
Confidence 8999999994 22 57899999999999999999998864 3599999999999864 5799999999998754
Q ss_pred ccCCccceEEEEeecCCCCCCC
Q psy16327 220 HYNGKCEHLEITLDLMNDSRVS 241 (994)
Q Consensus 220 ~~~~~~~~~~~~l~L~~~~~~~ 241 (994)
.. ... .+++|....+..
T Consensus 124 ~~---~~~--~W~~L~~~~~~~ 140 (142)
T 2dmg_A 124 AK---GWT--QWYDLTEDSGPS 140 (142)
T ss_dssp TT---CBC--CBCCCBCSCSCC
T ss_pred cc---ccc--ceeeccCCCCCC
Confidence 32 222 345555544433
No 59
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.20 E-value=1.2e-11 Score=125.04 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=60.5
Q ss_pred CCCCCCeEEEeeccCCceeeeeec-CCCCCCcceEEEEEecC-CCeEEEEEecCCCCCCCcccceEEeehhhhhccc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVK-NTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHY 221 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k-~tlnP~Wne~f~~~v~~-~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~ 221 (994)
..++||||+|. ++ ..||++++ +++||+|||+|.|.+.. ...|.|+|||+| +.+|++||.+.|+|.++....
T Consensus 29 ~g~~DPYV~v~--~~-~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~L~~l~~~~ 101 (167)
T 2cjs_A 29 QEKFNTYVTLK--VQ-NVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSN 101 (167)
T ss_dssp GGGCEEEEEEE--ET-TEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEEEEEEEEEGGGSCBCS
T ss_pred CCCCCeEEEEE--ec-ceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCceEEEEEEEHHHhcccC
Confidence 45689999999 33 56776665 79999999999998874 468999999999 999999999999999987653
No 60
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.19 E-value=2.1e-11 Score=134.70 Aligned_cols=104 Identities=21% Similarity=0.268 Sum_probs=79.4
Q ss_pred CCCCCCeEEEee--ccCCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEee-hhhhhc
Q psy16327 147 LLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLN-IYGVLA 219 (994)
Q Consensus 147 f~~~dPyv~v~~--~g~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~-l~~~~~ 219 (994)
+.++||||+|.+ ++.+++||+++++|+||+|||+|.|.+.. ...|.|.|||+|++++|++||++.|+ |.++..
T Consensus 38 ~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~ 117 (296)
T 1dqv_A 38 NGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAE 117 (296)
T ss_dssp TSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGS
T ss_pred CCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCCCCCceEEEEEecccccccc
Confidence 567999999999 56778999999999999999999998863 34899999999999999999999995 555544
Q ss_pred ccCCccceEEEEeecCCCCCCCCCeEEEecCCc
Q psy16327 220 HYNGKCEHLEITLDLMNDSRVSPPLMSVEMPPL 252 (994)
Q Consensus 220 ~~~~~~~~~~~~l~L~~~~~~~~G~l~v~~~~~ 252 (994)
... ....|..|..........|+|.+.+.+.
T Consensus 118 ~~~--~~~~w~~L~~~~~~~~~~G~i~vsl~y~ 148 (296)
T 1dqv_A 118 QPP--DRPLWRDILEGGSEKADLGELNFSLCYL 148 (296)
T ss_dssp SCS--SCCCCEECBCCSSCCSCCCEEEEEEEEE
T ss_pred CCc--cceeeeccccccccccccceEEEEEEec
Confidence 321 1223444433333445679998887653
No 61
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=99.18 E-value=2.2e-11 Score=121.83 Aligned_cols=70 Identities=23% Similarity=0.325 Sum_probs=61.8
Q ss_pred CCCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhh
Q psy16327 147 LLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYG 216 (994)
Q Consensus 147 f~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~ 216 (994)
+.++||||+|.+.+. .++||+++++|+||+|||+|.|.+.. ...|.|.|||+|.+++|++||.+.|+|..
T Consensus 43 ~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~ 120 (159)
T 1tjx_A 43 GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS 120 (159)
T ss_dssp TSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTC
T ss_pred CCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCC
Confidence 467999999999642 36899999999999999999998864 35899999999999999999999999984
No 62
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=99.18 E-value=1e-11 Score=123.37 Aligned_cols=70 Identities=26% Similarity=0.243 Sum_probs=60.7
Q ss_pred CCCCCCeEEEeec--cCC--ceeeeeecCCCCCCcceEEEEEecCC----CeEEEEEecCCCCCCCcccceEEeehhh
Q psy16327 147 LLKPNPYIELYVD--YKN--PKTTRVVKNTYQPKWNEEFTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIYG 216 (994)
Q Consensus 147 f~~~dPyv~v~~~--g~~--~~kT~v~k~tlnP~Wne~f~~~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~~ 216 (994)
+.++||||+|.+. +.. ++||+++++|+||+|||+|.|.+... ..|.|.|||+|.+++|++||.+.|+|.+
T Consensus 48 ~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 48 SGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp --CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred CCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence 4568999999993 332 57999999999999999999988754 5899999999999999999999999987
No 63
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=99.18 E-value=1e-11 Score=120.64 Aligned_cols=71 Identities=24% Similarity=0.411 Sum_probs=62.8
Q ss_pred CCCCCCeEEEeeccC----CceeeeeecCCCCCCcceEEEEEecCC----CeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327 147 LLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIYGV 217 (994)
Q Consensus 147 f~~~dPyv~v~~~g~----~~~kT~v~k~tlnP~Wne~f~~~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~~~ 217 (994)
+.++||||+|.+.+. .++||+++++|+||.|||+|.|.+... ..|.|.|||+|.+++|++||.+.|+|.++
T Consensus 34 ~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~ 112 (138)
T 3n5a_A 34 GGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSG 112 (138)
T ss_dssp TTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSC
T ss_pred CCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccC
Confidence 457899999999753 478999999999999999999988654 48999999999999999999999999864
No 64
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.17 E-value=1.2e-11 Score=97.59 Aligned_cols=41 Identities=37% Similarity=0.711 Sum_probs=38.4
Q ss_pred CcccccCCC---CCCCCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327 396 RSSSWERPQ---PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 436 (994)
Q Consensus 396 ~~t~w~~P~---~lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~ 436 (994)
++|+|++|. +||+|||++.|++|++|||||+|++|+|++|.
T Consensus 1 ~tt~W~~P~~~~~LP~GWe~~~d~~g~~YYvnh~t~~T~We~P~ 44 (49)
T 2dwv_A 1 GSSGSSGPLEREGLPPGWERVESSEFGTYYVDHTNKRAQYRHPS 44 (49)
T ss_dssp CCSSSCCSCCSSCCCTTEEEEEETTTEEEEEETTTTEEESSCCC
T ss_pred CeecCcCCCCCCCCCcCcEEEECCCCCEEEEECCCCCEeccCcC
Confidence 578999994 79999999999999999999999999999997
No 65
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.16 E-value=7.4e-11 Score=129.21 Aligned_cols=101 Identities=20% Similarity=0.249 Sum_probs=80.1
Q ss_pred CCCCCCeEEEeecc--CCceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCCCCcccceEEeehhhhhcc
Q psy16327 147 LLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH 220 (994)
Q Consensus 147 f~~~dPyv~v~~~g--~~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~ 220 (994)
..++||||+|.+++ .+++||+++++|+||.|||+|.|.+.. ...|.|.|||+|.+++|++||++.|+|.++...
T Consensus 37 ~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~ 116 (284)
T 2r83_A 37 GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 116 (284)
T ss_dssp SSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCS
T ss_pred CCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccC
Confidence 45799999999953 457899999999999999999998763 369999999999999999999999999998543
Q ss_pred cCCccceEEEEeecCCCC---CCCCCeEEEecCCc
Q psy16327 221 YNGKCEHLEITLDLMNDS---RVSPPLMSVEMPPL 252 (994)
Q Consensus 221 ~~~~~~~~~~~l~L~~~~---~~~~G~l~v~~~~~ 252 (994)
.... .+++|.... ....|+|.+.+...
T Consensus 117 ---~~~~--~w~~L~~~~~~~~~~~G~i~l~l~~~ 146 (284)
T 2r83_A 117 ---HVTE--EWRDLQSAEKEEQEKLGDICFSLRYV 146 (284)
T ss_dssp ---SCEE--EEEECBCCSSCCCCCCCEEEEEEEEE
T ss_pred ---Ccce--eEEEeeccccccccccccEEEEEEec
Confidence 2223 444555432 24679998887653
No 66
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=99.15 E-value=2.9e-12 Score=116.98 Aligned_cols=58 Identities=29% Similarity=0.600 Sum_probs=53.9
Q ss_pred CCCCceEeecCCCCeeeeeCCCCcccccCCCCCCCCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327 374 LPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 436 (994)
Q Consensus 374 lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~ 436 (994)
.|.||+.+.++.|++||+||++.. -.+||+|||.++|++|++||+||+|++|+|++|.
T Consensus 46 ~p~~we~~~~~~~lV~~vn~~~d~-----~~pLP~GWE~r~d~~Gr~YfIdH~tktTtW~dPR 103 (109)
T 3l4h_A 46 DARNFERYQHNRDLVNFINMFADT-----RLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPR 103 (109)
T ss_dssp CTHHHHHHTTCHHHHHHHHTTCCT-----TSCCCTTEEEEECTTCCEEEEETTTTEEESSCSC
T ss_pred CCcChhhhcCcCCceEEeccCCCC-----CCCCCCCCeEEECCCCCEEEEeCCCCCEeeCCCC
Confidence 688999999999999999999743 3479999999999999999999999999999997
No 67
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=99.10 E-value=6e-11 Score=93.53 Aligned_cols=40 Identities=38% Similarity=0.745 Sum_probs=35.8
Q ss_pred CCCCCCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327 504 SWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543 (994)
Q Consensus 504 ~~~~~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~ 543 (994)
.++...+||+||+++++.+||+|||||.|++|+|++|+..
T Consensus 7 ~~~~~~~LP~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~~ 46 (49)
T 2zaj_A 7 GLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPSGP 46 (49)
T ss_dssp CCCCSSCCCTTEEEEEETTTEEEEEETTTTEEESSCCCSS
T ss_pred ccCCCCCCCcCceEEEcCCCCEEEEeCCCCCEecCCCCCC
Confidence 3455678999999999999999999999999999999864
No 68
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=99.08 E-value=5.4e-11 Score=89.07 Aligned_cols=34 Identities=38% Similarity=1.000 Sum_probs=32.3
Q ss_pred CCCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS 542 (994)
Q Consensus 509 ~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~ 542 (994)
.+||+||+++++.+|++||+||.|++|+|++||.
T Consensus 5 ~~LP~gWe~~~~~~G~~Yy~nh~t~~ttW~~Prl 38 (38)
T 2law_A 5 GPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPRL 38 (38)
T ss_dssp CCCSSSCCEEEETTTEEEEEETTTTEEESSCTTC
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 4799999999999999999999999999999984
No 69
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=8.1e-11 Score=96.49 Aligned_cols=42 Identities=40% Similarity=0.710 Sum_probs=37.2
Q ss_pred CCCCCCCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChhh
Q psy16327 503 SSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSER 544 (994)
Q Consensus 503 ~~~~~~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~~ 544 (994)
..++...+||+|||+++|.+||+|||||.|++|+|++|+...
T Consensus 6 ~~~d~~~~LP~GWE~~~d~~Gr~YYvnh~tk~T~We~P~~~~ 47 (60)
T 2yse_A 6 SGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLEA 47 (60)
T ss_dssp CCCCCCSSCCSSEEEEECSSSCEEEEETTTTEEESSCHHHHH
T ss_pred cccCCCCCCCCCcEEEECCCCCEEEEeCCCCCeeccCCCchh
Confidence 344566789999999999999999999999999999999763
No 70
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=99.07 E-value=1e-10 Score=88.58 Aligned_cols=35 Identities=46% Similarity=0.878 Sum_probs=32.9
Q ss_pred CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS 542 (994)
Q Consensus 508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~ 542 (994)
..+||+||+++++.+|++||+||+|++|+|++|+.
T Consensus 5 ~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr~ 39 (40)
T 2ysf_A 5 SSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRT 39 (40)
T ss_dssp CCCCCSSEEEEECTTCCEEEEETTTCCEESSCTTT
T ss_pred cCCCCcCcEEEEcCCCCEEEEECCCCcEecCCCCC
Confidence 35899999999999999999999999999999985
No 71
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=99.07 E-value=9.2e-11 Score=88.84 Aligned_cols=35 Identities=34% Similarity=0.739 Sum_probs=32.8
Q ss_pred CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS 542 (994)
Q Consensus 508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~ 542 (994)
..+||+||+++++.+||+|||||.|++|+|++|+.
T Consensus 5 ~~~LP~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~~ 39 (40)
T 2ysg_A 5 SSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPVM 39 (40)
T ss_dssp SSCCCTTEEEEECSSSCEEEEESSSCCEECCCCCC
T ss_pred cCCCCCCcEEEEcCCCCEEEEECCCCcCcCCCCCC
Confidence 34899999999999999999999999999999985
No 72
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=99.06 E-value=1.1e-10 Score=89.22 Aligned_cols=35 Identities=54% Similarity=1.161 Sum_probs=33.0
Q ss_pred CCCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543 (994)
Q Consensus 509 ~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~ 543 (994)
.+||+||+++++.+||+|||||.|++|+|++|+..
T Consensus 6 ~~LP~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~~ 40 (42)
T 2djy_A 6 GPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS 40 (42)
T ss_dssp SCCCSSEEEEECSSSCEEEEETTTTEEESSCTTTS
T ss_pred CCCCcCcEEEECCCCCEEEEECCCCCEeCCCCCCC
Confidence 47999999999999999999999999999999964
No 73
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=99.04 E-value=1.6e-10 Score=91.03 Aligned_cols=40 Identities=40% Similarity=0.712 Sum_probs=36.1
Q ss_pred ccccCCCCCCCceEEEcCCCceEEEecCCcccccCCCCcc
Q psy16327 590 EDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629 (994)
Q Consensus 590 ~~~~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~ 629 (994)
+.+...+||+|||++++++|++|||||.|++|+|+|||..
T Consensus 7 ~~~~~~~LP~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~~ 46 (49)
T 2zaj_A 7 GLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPSGP 46 (49)
T ss_dssp CCCCSSCCCTTEEEEEETTTEEEEEETTTTEEESSCCCSS
T ss_pred ccCCCCCCCcCceEEEcCCCCEEEEeCCCCCEecCCCCCC
Confidence 3455679999999999999999999999999999999964
No 74
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=99.04 E-value=1.2e-10 Score=89.88 Aligned_cols=38 Identities=55% Similarity=1.103 Sum_probs=30.5
Q ss_pred cccCCCCCCCCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327 399 SWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 436 (994)
Q Consensus 399 ~w~~P~~lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~ 436 (994)
+|++|.+||+||+++.|++|++||+||.|++|+|++|.
T Consensus 2 ~we~~~~LP~gW~~~~~~~Gr~YY~n~~T~~t~We~P~ 39 (43)
T 1ymz_A 2 SHGRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPT 39 (43)
T ss_dssp -----CCCCSSEEEEECTTSCEEEEETTTTEEESSCCC
T ss_pred CcccCCCCCCCCEEEECCCCCEEEEECCCCCCcccCCc
Confidence 68999999999999999999999999999999999996
No 75
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=99.03 E-value=1.7e-10 Score=85.48 Aligned_cols=34 Identities=62% Similarity=1.265 Sum_probs=32.1
Q ss_pred CCCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS 542 (994)
Q Consensus 509 ~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~ 542 (994)
.+||+||+++.|.+|++||+||.|++|+|++|++
T Consensus 3 ~~LP~GWe~~~d~~G~~Yy~n~~t~~t~We~P~l 36 (36)
T 1wr3_A 3 PPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPSL 36 (36)
T ss_dssp SCSCTTEEEEECSSSCEEEEETTTCCEESSCSCC
T ss_pred CCCCCCCEEEECCCCCEEEEECCCCCEeeeCcCC
Confidence 4799999999999999999999999999999973
No 76
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=99.03 E-value=1.2e-10 Score=87.28 Aligned_cols=35 Identities=54% Similarity=1.195 Sum_probs=32.6
Q ss_pred CCCCCCCceEEEcCCCceEEEecCCcccccCCCCc
Q psy16327 594 LGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRT 628 (994)
Q Consensus 594 ~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~ 628 (994)
..+||+||+++++++|++||+||.|++|+|+|||.
T Consensus 4 ~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttW~~Prl 38 (38)
T 2law_A 4 EGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPRL 38 (38)
T ss_dssp -CCCSSSCCEEEETTTEEEEEETTTTEEESSCTTC
T ss_pred cCCCCCCcEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 35899999999999999999999999999999984
No 77
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=99.03 E-value=1.5e-10 Score=88.16 Aligned_cols=35 Identities=51% Similarity=1.169 Sum_probs=32.9
Q ss_pred CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS 542 (994)
Q Consensus 508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~ 542 (994)
..+||+||++++|++|++||+||.|++|+|++|+.
T Consensus 6 ~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr~ 40 (41)
T 1wr7_A 6 QSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRL 40 (41)
T ss_dssp CCSSCTTEEEEECTTSCEEEEETTTTEEESSCGGG
T ss_pred cCCCCCCcEEEEcCCCCEEEEECCCCCeecCCCCC
Confidence 35899999999999999999999999999999985
No 78
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=99.03 E-value=2.8e-10 Score=92.69 Aligned_cols=35 Identities=40% Similarity=0.925 Sum_probs=32.2
Q ss_pred CCCCCCCCceEeecCCCCeeeeeCCCCcccccCCC
Q psy16327 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404 (994)
Q Consensus 370 ~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~ 404 (994)
...+||+||+++.+++||+|||||+|++|+|++|.
T Consensus 11 ~~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr 45 (57)
T 2ysd_A 11 NLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPR 45 (57)
T ss_dssp CCCSCCSSEEEEECSSCCEEEEETTTTEEESSCTT
T ss_pred CCCCCCcCcEEEECCCCCEEEEECCCCcEecCCCC
Confidence 44689999999999999999999999999999994
No 79
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=99.02 E-value=1.5e-10 Score=137.01 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=71.3
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEe-c--CCCeEEEEEecCCCCCCCcccceEEeehhhhhcccCC
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV-S--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNG 223 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v-~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~ 223 (994)
+.++||||+|.++++ ++||+|+++++||+|||+|.|.+ . ....|.|+|||+|.+++|||||.+.++|.. |
T Consensus 411 ~g~sDPYV~v~l~~~-~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~LG~~~~~L~~------g 483 (540)
T 3nsj_A 411 TTATDAYLKVFFGGQ-EFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPHS------G 483 (540)
T ss_dssp CSCCCEEEEEEETTE-EEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCEEEEEEEECCCS------E
T ss_pred CCCcCeEEEEEECCE-eeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCCEEEEEEEEeeC------C
Confidence 567999999999775 79999999999999999999964 2 567999999999999999999999999872 2
Q ss_pred ccceEEEEeecCCCCCCCCCeEEEecC
Q psy16327 224 KCEHLEITLDLMNDSRVSPPLMSVEMP 250 (994)
Q Consensus 224 ~~~~~~~~l~L~~~~~~~~G~l~v~~~ 250 (994)
. .+.+..| ..|.|.+.+.
T Consensus 484 ~---~~~~~~l------~~G~l~~~~~ 501 (540)
T 3nsj_A 484 F---HEVTCEL------NHGRVKFSYH 501 (540)
T ss_dssp E---EEEEEEC------SSSEEEEEEE
T ss_pred c---EEEEEEc------CCeEEEEEEE
Confidence 2 2233443 3588777664
No 80
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=99.02 E-value=2.5e-10 Score=90.14 Aligned_cols=36 Identities=50% Similarity=1.082 Sum_probs=33.6
Q ss_pred CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543 (994)
Q Consensus 508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~ 543 (994)
..+||+||+++++++|++|||||+|++|+|++|+..
T Consensus 9 ~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~~ 44 (49)
T 2ysb_A 9 DLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLES 44 (49)
T ss_dssp CCCCCTTEEEEECSSSCEEEEETTTTEEESSCTTTS
T ss_pred CCCCCCCceEEECCCCCEEEEEcCCCCEEecCCCCC
Confidence 458999999999999999999999999999999964
No 81
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=99.02 E-value=2e-10 Score=87.78 Aligned_cols=36 Identities=61% Similarity=1.103 Sum_probs=33.8
Q ss_pred CCCCCCCceEEEcCCCceEEEecCCcccccCCCCcc
Q psy16327 594 LGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629 (994)
Q Consensus 594 ~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~ 629 (994)
.++||+|||++++++|++|||||.|++|+|+|||..
T Consensus 5 ~~~LP~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~~ 40 (42)
T 2djy_A 5 SGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS 40 (42)
T ss_dssp CSCCCSSEEEEECSSSCEEEEETTTTEEESSCTTTS
T ss_pred cCCCCcCcEEEECCCCCEEEEECCCCCEeCCCCCCC
Confidence 358999999999999999999999999999999974
No 82
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=99.02 E-value=1.9e-10 Score=86.78 Aligned_cols=34 Identities=71% Similarity=1.323 Sum_probs=32.4
Q ss_pred CCCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS 542 (994)
Q Consensus 509 ~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~ 542 (994)
.+||+||++++|++|++||+||.|++|+|++|+.
T Consensus 5 ~~LP~gWe~~~d~~G~~YY~n~~t~~t~We~P~~ 38 (39)
T 2kyk_A 5 GPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTL 38 (39)
T ss_dssp CCCCSSCEEEECTTSCEEEECSSSCCEECCCCCC
T ss_pred CCCCCCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence 4899999999999999999999999999999985
No 83
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=99.02 E-value=2.1e-10 Score=89.52 Aligned_cols=36 Identities=42% Similarity=1.085 Sum_probs=33.5
Q ss_pred CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543 (994)
Q Consensus 508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~ 543 (994)
..+||+|||++++.+||+||+||+|++|+|++|+..
T Consensus 8 ~~~LP~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr~~ 43 (46)
T 2ez5_W 8 EEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNG 43 (46)
T ss_dssp SCCCCTTEEEEECTTSSEEEEETTTTEEESBCTTTC
T ss_pred CCCCCcCcEEEEcCCCCEEEEECCCCCEeccCCCCC
Confidence 347999999999999999999999999999999964
No 84
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=99.02 E-value=2.3e-10 Score=86.70 Aligned_cols=35 Identities=43% Similarity=0.848 Sum_probs=33.1
Q ss_pred CCCCCCCceEEEcCCCceEEEecCCcccccCCCCc
Q psy16327 594 LGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRT 628 (994)
Q Consensus 594 ~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~ 628 (994)
..+||+||+++++++|++|||||.|++|+|+|||.
T Consensus 5 ~~~LP~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~~ 39 (40)
T 2ysg_A 5 SSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPVM 39 (40)
T ss_dssp SSCCCTTEEEEECSSSCEEEEESSSCCEECCCCCC
T ss_pred cCCCCCCcEEEEcCCCCEEEEECCCCcCcCCCCCC
Confidence 35899999999999999999999999999999985
No 85
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=99.02 E-value=2.4e-10 Score=86.55 Aligned_cols=34 Identities=56% Similarity=1.014 Sum_probs=32.7
Q ss_pred CCCCCCceEEEcCCCceEEEecCCcccccCCCCc
Q psy16327 595 GSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRT 628 (994)
Q Consensus 595 ~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~ 628 (994)
.+||+|||++++++|++|||||.|++|+|+|||.
T Consensus 6 ~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr~ 39 (40)
T 2ysf_A 6 SGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRT 39 (40)
T ss_dssp CCCCSSEEEEECTTCCEEEEETTTCCEESSCTTT
T ss_pred CCCCcCcEEEEcCCCCEEEEECCCCcEecCCCCC
Confidence 5899999999999999999999999999999996
No 86
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.01 E-value=3.7e-10 Score=134.10 Aligned_cols=99 Identities=23% Similarity=0.369 Sum_probs=77.2
Q ss_pred CCCCCCeEEEeeccCCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhcccCCc
Q psy16327 147 LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGK 224 (994)
Q Consensus 147 f~~~dPyv~v~~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~~~~~ 224 (994)
+.++||||+|.+++ +++||+++++|+||.|||+|.|.+.. ...|.|.|||+|.+++|++||.+.|+|.++.......
T Consensus 405 ~~~sdpyv~v~~~~-~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~ 483 (510)
T 3jzy_A 405 NGKSNPYCEISMGS-QSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESK 483 (510)
T ss_dssp TSCCCEEEEEEETT-EEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHH
T ss_pred CCCCCeEEEEEECC-eeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCC
Confidence 56799999999955 48999999999999999999998864 3579999999999999999999999999997642111
Q ss_pred cceEEEEeecCCCCCCCCCeEEEecC
Q psy16327 225 CEHLEITLDLMNDSRVSPPLMSVEMP 250 (994)
Q Consensus 225 ~~~~~~~l~L~~~~~~~~G~l~v~~~ 250 (994)
..+..++.|.. ...|+|.|.+.
T Consensus 484 -~~~~~~~~l~~---~~~G~i~l~~~ 505 (510)
T 3jzy_A 484 -GPMTRRLLLHE---VPTGEVWVRFD 505 (510)
T ss_dssp -CSCCEEEECBS---SSSCEEEEEEE
T ss_pred -CceeeeecCCC---CCCceEEEEEE
Confidence 11223334442 25688877664
No 87
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=99.00 E-value=2.2e-10 Score=87.34 Aligned_cols=35 Identities=46% Similarity=1.116 Sum_probs=28.9
Q ss_pred CCCCCCCCceEeecCCCCeeeeeCCCCcccccCCC
Q psy16327 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404 (994)
Q Consensus 370 ~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~ 404 (994)
...+||+||+++.+++||+|||||+|++|+|++|.
T Consensus 5 ~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr 39 (41)
T 1wr7_A 5 IQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPR 39 (41)
T ss_dssp CCCSSCTTEEEEECTTSCEEEEETTTTEEESSCGG
T ss_pred ccCCCCCCcEEEEcCCCCEEEEECCCCCeecCCCC
Confidence 34678888888888888888888888888888883
No 88
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=99.00 E-value=2.4e-10 Score=88.10 Aligned_cols=39 Identities=54% Similarity=1.060 Sum_probs=33.0
Q ss_pred CCCCCCCCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327 504 SWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS 542 (994)
Q Consensus 504 ~~~~~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~ 542 (994)
+|+.+.+||+||++++|++||+||+||.|++|+|++|+.
T Consensus 2 ~we~~~~LP~gW~~~~~~~Gr~YY~n~~T~~t~We~P~~ 40 (43)
T 1ymz_A 2 SHGRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTI 40 (43)
T ss_dssp -----CCCCSSEEEEECTTSCEEEEETTTTEEESSCCCS
T ss_pred CcccCCCCCCCCEEEECCCCCEEEEECCCCCCcccCCcc
Confidence 578888999999999999999999999999999999985
No 89
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=99.00 E-value=3.8e-10 Score=88.01 Aligned_cols=36 Identities=42% Similarity=1.055 Sum_probs=33.4
Q ss_pred CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543 (994)
Q Consensus 508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~ 543 (994)
..+||+||+++++.+|++|||||.|++|+|++|+..
T Consensus 9 ~~~LP~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr~~ 44 (46)
T 2l4j_A 9 SGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRLE 44 (46)
T ss_dssp TSCCCTTCEEEECTTSCEEEEETTTTEEECSCCSSC
T ss_pred CCCCCcCceeEECCCCCEEEEECCCCCEeCCCCCcC
Confidence 358999999999999999999999999999999963
No 90
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=98.99 E-value=3e-10 Score=84.15 Aligned_cols=34 Identities=59% Similarity=1.206 Sum_probs=32.0
Q ss_pred CCCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS 542 (994)
Q Consensus 509 ~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~ 542 (994)
.+||+||+++.|++|++||+||.|++|+|++|+.
T Consensus 3 ~~LP~gWe~~~d~~g~~Yy~n~~t~~t~W~~P~~ 36 (36)
T 1wr4_A 3 PGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPIM 36 (36)
T ss_dssp TTCCTTEEEEECSSSCEEEEETTTTEEESSCCCC
T ss_pred CCCCCCCEEEECCCCCEEEEECCCCCEeCcCCCC
Confidence 4799999999999999999999999999999973
No 91
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=98.98 E-value=3.4e-10 Score=89.91 Aligned_cols=36 Identities=44% Similarity=1.094 Sum_probs=33.5
Q ss_pred CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543 (994)
Q Consensus 508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~ 543 (994)
..+||+||+++++.+||+|||||.|++|+|++|+..
T Consensus 9 ~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~~ 44 (50)
T 1i5h_W 9 LGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQ 44 (50)
T ss_dssp CSSCSTTEEEEECTTSCEEEEETTTTEEESSCTTTS
T ss_pred CCCCCcCcEEEEcCCCCEEEEECCCCCEEeeCCCCC
Confidence 458999999999999999999999999999999964
No 92
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=98.98 E-value=4.1e-10 Score=87.81 Aligned_cols=35 Identities=37% Similarity=0.920 Sum_probs=29.3
Q ss_pred CCCCCCCCceEeecCCCCeeeeeCCCCcccccCCC
Q psy16327 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404 (994)
Q Consensus 370 ~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~ 404 (994)
...+||+||+++.+++|++|||||+|++|+|++|.
T Consensus 8 ~~~~LP~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr 42 (46)
T 2l4j_A 8 ASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPR 42 (46)
T ss_dssp TTSCCCTTCEEEECTTSCEEEEETTTTEEECSCCS
T ss_pred cCCCCCcCceeEECCCCCEEEEECCCCCEeCCCCC
Confidence 44678888888888888888888888888888884
No 93
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=98.98 E-value=3.6e-10 Score=88.19 Aligned_cols=35 Identities=40% Similarity=1.065 Sum_probs=29.1
Q ss_pred CCCCCCCCceEeecCCCCeeeeeCCCCcccccCCC
Q psy16327 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404 (994)
Q Consensus 370 ~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~ 404 (994)
...+||+||+++.+++||+|||||+|++|+|++|.
T Consensus 7 ~~~~LP~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr 41 (46)
T 2ez5_W 7 EEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPR 41 (46)
T ss_dssp CSCCCCTTEEEEECTTSSEEEEETTTTEEESBCTT
T ss_pred CCCCCCcCcEEEEcCCCCEEEEECCCCCEeccCCC
Confidence 34578888888888888888888888888888884
No 94
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=98.97 E-value=3.7e-10 Score=90.60 Aligned_cols=36 Identities=50% Similarity=1.043 Sum_probs=33.5
Q ss_pred CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543 (994)
Q Consensus 508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~ 543 (994)
..+||+|||++++.+|++|||||+|++|+|++|+..
T Consensus 16 ~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~~ 51 (53)
T 2jmf_A 16 EGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPG 51 (53)
T ss_dssp CSCCCTTEEEEECTTSCEEEEETTTCCEESSCCCSS
T ss_pred CCCCCcCcEEEEcCCCCEEEEeCCCCcEecCCCCCC
Confidence 358999999999999999999999999999999963
No 95
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=98.97 E-value=3.4e-10 Score=83.84 Aligned_cols=32 Identities=63% Similarity=1.378 Sum_probs=23.0
Q ss_pred CCCCCCceEeecCCCCeeeeeCCCCcccccCC
Q psy16327 372 EPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403 (994)
Q Consensus 372 ~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P 403 (994)
.+||+||+++.|++||+|||||+|++|+|++|
T Consensus 3 ~~LP~GWe~~~d~~G~~Yy~n~~t~~t~We~P 34 (36)
T 1wr3_A 3 PPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRP 34 (36)
T ss_dssp SCSCTTEEEEECSSSCEEEEETTTCCEESSCS
T ss_pred CCCCCCCEEEECCCCCEEEEECCCCCEeeeCc
Confidence 35777777777777777777777777777776
No 96
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=98.97 E-value=5.4e-10 Score=88.74 Aligned_cols=39 Identities=59% Similarity=1.224 Sum_probs=35.5
Q ss_pred ccCCCCCCCceEEEcCCCceEEEecCCcccccCCCCccc
Q psy16327 592 DALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQG 630 (994)
Q Consensus 592 ~~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~ 630 (994)
+..++||+||+++++.+|++|||||.|++|+|+|||...
T Consensus 7 ~~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~~~ 45 (50)
T 1i5h_W 7 NDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQN 45 (50)
T ss_dssp SCCSSCSTTEEEEECTTSCEEEEETTTTEEESSCTTTSC
T ss_pred ccCCCCCcCcEEEEcCCCCEEEEECCCCCEEeeCCCCCc
Confidence 345789999999999999999999999999999999754
No 97
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=5e-10 Score=86.22 Aligned_cols=36 Identities=58% Similarity=1.171 Sum_probs=33.3
Q ss_pred CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543 (994)
Q Consensus 508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~ 543 (994)
..+||+||++++|++||+||+||.|++|+|++|+..
T Consensus 5 ~~~LP~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~~ 40 (43)
T 2dmv_A 5 SSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGP 40 (43)
T ss_dssp CCSCCTTEEEEECTTSCEEEEETTTCCEESSCSSSC
T ss_pred CCCCCCCceEEECCCCCEEEEECCCCCEecCCcCCC
Confidence 358999999999999999999999999999999853
No 98
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=98.95 E-value=4.1e-10 Score=89.22 Aligned_cols=36 Identities=47% Similarity=1.079 Sum_probs=32.6
Q ss_pred CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543 (994)
Q Consensus 508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~ 543 (994)
..+||+||++++|.+|++|||||+|++|+|++|+..
T Consensus 10 ~~~LP~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~~ 45 (49)
T 2kpz_A 10 QGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLK 45 (49)
T ss_dssp --CCCTTEEEEECTTSCEEEEETTTTEEESSCTTCC
T ss_pred CCCCCCCcEEEECCCCCEEEEECCCCCEecCCCCCC
Confidence 358999999999999999999999999999999964
No 99
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=98.95 E-value=5.8e-10 Score=84.06 Aligned_cols=35 Identities=54% Similarity=1.175 Sum_probs=33.1
Q ss_pred CCCCCCCceEEEcCCCceEEEecCCcccccCCCCc
Q psy16327 594 LGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRT 628 (994)
Q Consensus 594 ~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~ 628 (994)
.++||+||+++++++|++||+||.|++|+|++|+.
T Consensus 4 ~~~LP~gWe~~~d~~G~~YY~n~~t~~t~We~P~~ 38 (39)
T 2kyk_A 4 MGPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTL 38 (39)
T ss_dssp SCCCCSSCEEEECTTSCEEEECSSSCCEECCCCCC
T ss_pred cCCCCCCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence 46899999999999999999999999999999985
No 100
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.94 E-value=8.6e-10 Score=87.06 Aligned_cols=36 Identities=44% Similarity=1.093 Sum_probs=31.1
Q ss_pred CCCCCCCCceEeecCCCCeeeeeCCCCcccccCCCC
Q psy16327 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQP 405 (994)
Q Consensus 370 ~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~ 405 (994)
...+||+||+++.+++||+|||||+|++|+|++|..
T Consensus 8 ~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~ 43 (49)
T 2ysb_A 8 EDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLE 43 (49)
T ss_dssp CCCCCCTTEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CCCCCCCCceEEECCCCCEEEEEcCCCCEEecCCCC
Confidence 345799999999999999999999999999999954
No 101
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=7.3e-10 Score=85.33 Aligned_cols=35 Identities=51% Similarity=1.105 Sum_probs=29.5
Q ss_pred CCCCCCCceEeecCCCCeeeeeCCCCcccccCCCC
Q psy16327 371 EEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQP 405 (994)
Q Consensus 371 ~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~ 405 (994)
..+||+||+++.|++||+|||||+|++|+|++|..
T Consensus 5 ~~~LP~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~ 39 (43)
T 2dmv_A 5 SSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSG 39 (43)
T ss_dssp CCSCCTTEEEEECTTSCEEEEETTTCCEESSCSSS
T ss_pred CCCCCCCceEEECCCCCEEEEECCCCCEecCCcCC
Confidence 35788899998888899999999999999988853
No 102
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=98.93 E-value=1e-09 Score=88.48 Aligned_cols=39 Identities=41% Similarity=0.838 Sum_probs=35.6
Q ss_pred cCCCCCCCceEEEcCCCceEEEecCCcccccCCCCcccc
Q psy16327 593 ALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQ 631 (994)
Q Consensus 593 ~~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~~ 631 (994)
..++||+|||++++++|++|||||.|++|+|+|||....
T Consensus 8 ~~~~LP~GWe~~~~~~G~~Yyinh~tk~TtwedPr~~~~ 46 (54)
T 1wmv_A 8 VAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFT 46 (54)
T ss_dssp CSSCSCTTEEEEECTTSCEEEEESSSCCEESSCTTSSCC
T ss_pred cCCCCCcCcEEEECCCCCEEEEeCCCCCEeecCCCCccc
Confidence 346899999999999999999999999999999998654
No 103
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=98.93 E-value=5.6e-10 Score=82.69 Aligned_cols=32 Identities=56% Similarity=1.240 Sum_probs=23.3
Q ss_pred CCCCCCceEeecCCCCeeeeeCCCCcccccCC
Q psy16327 372 EPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403 (994)
Q Consensus 372 ~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P 403 (994)
.+||+||+++.+++||+|||||+|++|+|++|
T Consensus 3 ~~LP~gWe~~~d~~g~~Yy~n~~t~~t~W~~P 34 (36)
T 1wr4_A 3 PGLPSGWEERKDAKGRTYYVNHNNRTTTWTRP 34 (36)
T ss_dssp TTCCTTEEEEECSSSCEEEEETTTTEEESSCC
T ss_pred CCCCCCCEEEECCCCCEEEEECCCCCEeCcCC
Confidence 45777777777777777777777777777776
No 104
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=98.93 E-value=4.9e-10 Score=89.89 Aligned_cols=38 Identities=79% Similarity=1.482 Sum_probs=35.4
Q ss_pred CCCCCCCCcceeeccCcceeeeccCCCccccCCCCCCC
Q psy16327 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGV 676 (994)
Q Consensus 639 ~~~~LP~gWe~~~~~~g~~yfv~hn~r~tt~~dPr~~~ 676 (994)
...+||+|||++++.+|++|||||++++|+|+|||.+.
T Consensus 15 ~~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~~~ 52 (53)
T 2jmf_A 15 NEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPGA 52 (53)
T ss_dssp SCSCCCTTEEEEECTTSCEEEEETTTCCEESSCCCSSC
T ss_pred cCCCCCcCcEEEEcCCCCEEEEeCCCCcEecCCCCCCC
Confidence 46799999999999999999999999999999999864
No 105
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=98.92 E-value=8.3e-10 Score=82.30 Aligned_cols=33 Identities=42% Similarity=1.063 Sum_probs=31.8
Q ss_pred CCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS 542 (994)
Q Consensus 510 ~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~ 542 (994)
+||+||+++++++|++||+||.|++|+|++|+.
T Consensus 3 ~LP~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 3 GLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp CSCTTEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCeeeeCcCC
Confidence 799999999999999999999999999999985
No 106
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=8.9e-10 Score=90.34 Aligned_cols=43 Identities=42% Similarity=0.708 Sum_probs=35.2
Q ss_pred CcccccCCCCCCCCceeeeCCCCCeEEEeCCCCcccccCCchh
Q psy16327 396 RSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 438 (994)
Q Consensus 396 ~~t~w~~P~~lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~~~ 438 (994)
+...|....+||+|||++.|+.|++|||||+|++|+|++|...
T Consensus 4 g~~~~d~~~~LP~GWE~~~d~~Gr~YYvnh~tk~T~We~P~~~ 46 (60)
T 2yse_A 4 GSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLE 46 (60)
T ss_dssp CSCCCCCCSSCCSSEEEEECSSSCEEEEETTTTEEESSCHHHH
T ss_pred CccccCCCCCCCCCcEEEECCCCCEEEEeCCCCCeeccCCCch
Confidence 4455666678899999999888999999999999999999754
No 107
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=98.90 E-value=8.4e-10 Score=82.25 Aligned_cols=32 Identities=44% Similarity=1.096 Sum_probs=21.3
Q ss_pred CCCCCceEeecCCCCeeeeeCCCCcccccCCC
Q psy16327 373 PLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404 (994)
Q Consensus 373 ~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~ 404 (994)
+||+||+++.+++||+|||||.|++|+|++|.
T Consensus 3 ~LP~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~ 34 (37)
T 1e0m_A 3 GLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPR 34 (37)
T ss_dssp CSCTTEEEEECSSCCEEEEETTTTEEESSCTT
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCeeeeCcC
Confidence 56666666666666666666666666666663
No 108
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=98.89 E-value=9.3e-10 Score=87.15 Aligned_cols=37 Identities=51% Similarity=1.089 Sum_probs=32.9
Q ss_pred CCCCCCCceEEEcCCCceEEEecCCcccccCCCCccc
Q psy16327 594 LGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQG 630 (994)
Q Consensus 594 ~~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~ 630 (994)
.++||+||+++++++|++|||||.|++|+|+|||...
T Consensus 10 ~~~LP~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~~~ 46 (49)
T 2kpz_A 10 QGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKI 46 (49)
T ss_dssp --CCCTTEEEEECTTSCEEEEETTTTEEESSCTTCC-
T ss_pred CCCCCCCcEEEECCCCCEEEEECCCCCEecCCCCCCC
Confidence 4689999999999999999999999999999999753
No 109
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=98.89 E-value=1.6e-09 Score=118.64 Aligned_cols=71 Identities=24% Similarity=0.318 Sum_probs=61.6
Q ss_pred CCCCCCeEEEeec--cC--CceeeeeecCCCCCCcceEEEEEecCC----CeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327 147 LLKPNPYIELYVD--YK--NPKTTRVVKNTYQPKWNEEFTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIYGV 217 (994)
Q Consensus 147 f~~~dPyv~v~~~--g~--~~~kT~v~k~tlnP~Wne~f~~~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~~~ 217 (994)
+.++||||+|.+. |. .++||+++++|+||+|||.|.|.+... ..|.|.|||+|.+++|++||.+.|+|..+
T Consensus 168 ~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~ 246 (284)
T 2r83_A 168 GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 246 (284)
T ss_dssp TSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCC
T ss_pred CCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCC
Confidence 4569999999984 32 367999999999999999999988653 37999999999999999999999999763
No 110
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.88 E-value=1.3e-09 Score=82.74 Aligned_cols=34 Identities=47% Similarity=1.057 Sum_probs=27.5
Q ss_pred CCCCCCCceEeecCCCCeeeeeCCCCcccccCCC
Q psy16327 371 EEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404 (994)
Q Consensus 371 ~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~ 404 (994)
..+||+||+++.+++||+|||||.|++|+|++|.
T Consensus 5 ~~~LP~gW~~~~d~~Gr~YY~n~~T~~t~We~P~ 38 (40)
T 2ysh_A 5 SSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPS 38 (40)
T ss_dssp CSSCCTTCEEEECTTSCEEEECSSSCCEESSSCC
T ss_pred CCCCCCCceEEECCCCCEEEEECCCCCEeCCCCC
Confidence 3568888888888888888888888888888884
No 111
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.86 E-value=1.8e-09 Score=81.86 Aligned_cols=35 Identities=51% Similarity=1.086 Sum_probs=32.6
Q ss_pred CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS 542 (994)
Q Consensus 508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~ 542 (994)
+.+||+||++++|++||+||+||.|++|+|++|+.
T Consensus 5 ~~~LP~gW~~~~d~~Gr~YY~n~~T~~t~We~P~~ 39 (40)
T 2ysh_A 5 SSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPSS 39 (40)
T ss_dssp CSSCCTTCEEEECTTSCEEEECSSSCCEESSSCCC
T ss_pred CCCCCCCceEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 34799999999999999999999999999999974
No 112
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=98.86 E-value=1.4e-09 Score=87.61 Aligned_cols=42 Identities=40% Similarity=0.725 Sum_probs=37.8
Q ss_pred CCCCCCCcceeeccCcceeeeccCCCccccCCCCCCCCCCCC
Q psy16327 640 EPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQK 681 (994)
Q Consensus 640 ~~~LP~gWe~~~~~~g~~yfv~hn~r~tt~~dPr~~~~~~~~ 681 (994)
..+||+|||++++.+|++|||||++++|+|+|||......++
T Consensus 9 ~~~LP~GWe~~~~~~G~~Yyinh~tk~TtwedPr~~~~~~~~ 50 (54)
T 1wmv_A 9 AGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDN 50 (54)
T ss_dssp SSCSCTTEEEEECTTSCEEEEESSSCCEESSCTTSSCCCCCC
T ss_pred CCCCCcCcEEEECCCCCEEEEeCCCCCEeecCCCCccccccC
Confidence 578999999999999999999999999999999997665443
No 113
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=98.84 E-value=2.9e-09 Score=128.77 Aligned_cols=95 Identities=16% Similarity=0.289 Sum_probs=75.5
Q ss_pred CCCCCCeEEEeeccC----CceeeeeecCC-CCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327 147 LLKPNPYIELYVDYK----NPKTTRVVKNT-YQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 147 f~~~dPyv~v~~~g~----~~~kT~v~k~t-lnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
..++||||+|.+.|. .++||++++++ +||+|||+|.|.|.. ...|.|.|||+|.+++|++||.+.|+|.+|..
T Consensus 517 ~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~ 596 (624)
T 1djx_A 517 NSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ 596 (624)
T ss_dssp SSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCC
T ss_pred cCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCC
Confidence 457999999999763 47899999998 999999999998864 36899999999999999999999999999854
Q ss_pred ccCCccceEEEEeecCCCCCC--CCCeEEEec
Q psy16327 220 HYNGKCEHLEITLDLMNDSRV--SPPLMSVEM 249 (994)
Q Consensus 220 ~~~~~~~~~~~~l~L~~~~~~--~~G~l~v~~ 249 (994)
. . -.++|.+..+. ..+.|.|.+
T Consensus 597 G------~--r~v~L~d~~g~~~~~~~L~v~i 620 (624)
T 1djx_A 597 G------Y--RHVHLLSKNGDQHPSATLFVKI 620 (624)
T ss_dssp E------E--EEEEEECTTSCEEEEEEEEEEE
T ss_pred C------c--EEEeCCCCCcCCCCceEEEEEE
Confidence 2 1 24566655443 245666655
No 114
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=98.83 E-value=2.3e-09 Score=130.83 Aligned_cols=72 Identities=29% Similarity=0.600 Sum_probs=64.6
Q ss_pred CCCCCCeEEEeecc--CCceeeeeecCCCCCCcceEEEEEecC--CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327 147 LLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 147 f~~~dPyv~v~~~g--~~~~kT~v~k~tlnP~Wne~f~~~v~~--~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
+.++||||+|.+++ ..++||+|+++|+||+|||+|.|.+.. ...|.|.|||+|.++ |++||++.|+|.++..
T Consensus 39 ~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D~~~-ddfIG~v~I~L~~L~~ 114 (749)
T 1cjy_A 39 LDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKV 114 (749)
T ss_dssp HCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECCSSS-CEEEEEECCBSTTSCT
T ss_pred CCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECCCCC-CceeEEEEEEHHHcCC
Confidence 45799999999975 358899999999999999999998874 469999999999999 9999999999999843
No 115
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=98.82 E-value=2.7e-09 Score=79.27 Aligned_cols=33 Identities=36% Similarity=0.779 Sum_probs=30.7
Q ss_pred CCCCCceEEeCCCCCeEEEeCCCCceeccCCChh
Q psy16327 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543 (994)
Q Consensus 510 ~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~ 543 (994)
+||+||+++.|..| +||+||.|++|+|++|+..
T Consensus 3 ~LP~GWe~~~d~~g-~YY~n~~t~~tqWe~P~~~ 35 (38)
T 2ho2_A 3 DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGRA 35 (38)
T ss_dssp CSCTTEEEEECSSC-EEEEETTTTEEESSCCCC-
T ss_pred cCCCCceEEEeCCC-CEEEecCCCCEeccCCCCC
Confidence 69999999999999 9999999999999999853
No 116
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=98.78 E-value=5.6e-10 Score=131.44 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=5.6
Q ss_pred CCCeEEEeeccCCceeeeeecCC---CCCCcceEEEEEec-CCCeEEEEEec-CC---CCCCCcccceEEeehhhhhc
Q psy16327 150 PNPYIELYVDYKNPKTTRVVKNT---YQPKWNEEFTVLVS-PYSIILFRLLD-HR---TFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 150 ~dPyv~v~~~g~~~~kT~v~k~t---lnP~Wne~f~~~v~-~~~~l~~~V~D-~d---~~~~d~~lG~~~i~l~~~~~ 219 (994)
.||||++.++|+..+||++++|| +||+|||+|.|.+. ..+.|.|.||| +| ++.+|++||.+.|+|.++..
T Consensus 27 ddpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~ 104 (483)
T 3bxj_A 27 KRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAG 104 (483)
T ss_dssp --------------------------------CCEECC----------------------------------------
T ss_pred CCCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcC
Confidence 39999999988778899999999 99999999999754 45799999999 45 47889999999999999864
No 117
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=98.77 E-value=9.1e-10 Score=121.53 Aligned_cols=72 Identities=21% Similarity=0.258 Sum_probs=62.8
Q ss_pred CCCCCCeEEEeec--cC--CceeeeeecCCCCCCcceEEEEEecCC----CeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327 147 LLKPNPYIELYVD--YK--NPKTTRVVKNTYQPKWNEEFTVLVSPY----SIILFRLLDHRTFRRDCTIGEKRLNIYGVL 218 (994)
Q Consensus 147 f~~~dPyv~v~~~--g~--~~~kT~v~k~tlnP~Wne~f~~~v~~~----~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~ 218 (994)
+.++||||+|.+. |+ .++||+++++|+||+|||.|.|.+... ..|.|.|||+|.+++|++||.+.|++.++.
T Consensus 170 ~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~ 249 (296)
T 1dqv_A 170 TGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD 249 (296)
T ss_dssp SSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred CCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCC
Confidence 4568999999995 42 478999999999999999999988653 479999999999999999999999998763
No 118
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=98.75 E-value=4.8e-09 Score=77.95 Aligned_cols=30 Identities=47% Similarity=0.883 Sum_probs=15.9
Q ss_pred CCCCCceEeecCCCCeeeeeCCCCcccccCC
Q psy16327 373 PLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403 (994)
Q Consensus 373 ~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P 403 (994)
+||+||+++.|..| +|||||.|++|+|++|
T Consensus 3 ~LP~GWe~~~d~~g-~YY~n~~t~~tqWe~P 32 (38)
T 2ho2_A 3 DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPP 32 (38)
T ss_dssp CSCTTEEEEECSSC-EEEEETTTTEEESSCC
T ss_pred cCCCCceEEEeCCC-CEEEecCCCCEeccCC
Confidence 35555555555555 5555555555555555
No 119
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.75 E-value=5.4e-09 Score=78.22 Aligned_cols=32 Identities=41% Similarity=0.911 Sum_probs=27.0
Q ss_pred CCCCCCCceEeecCCCCeeeeeCCCCcccccCC
Q psy16327 371 EEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403 (994)
Q Consensus 371 ~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P 403 (994)
..+||+||+++.+++| .|||||.|++|+|++|
T Consensus 6 ~~~LP~GWe~~~~~~G-~YY~n~~t~~tqWe~P 37 (39)
T 2ysc_A 6 SGGLPPGWRKIHDAAG-TYYWHVPSGSTQWQRP 37 (39)
T ss_dssp CCCCCTTEEEEEETTE-EEEEESSSCCEESSCC
T ss_pred CCCCCCCcEEEEcCCC-CEEEEcCCCCEeccCC
Confidence 3578899998888888 4888888888888888
No 120
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.75 E-value=6.3e-09 Score=77.86 Aligned_cols=33 Identities=45% Similarity=0.916 Sum_probs=30.6
Q ss_pred CCCCCCCceEEeCCCCCeEEEeCCCCceeccCCC
Q psy16327 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 541 (994)
Q Consensus 508 ~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~ 541 (994)
+.+||+||+++.+++| .||+||.|++|+|++|+
T Consensus 6 ~~~LP~GWe~~~~~~G-~YY~n~~t~~tqWe~P~ 38 (39)
T 2ysc_A 6 SGGLPPGWRKIHDAAG-TYYWHVPSGSTQWQRPT 38 (39)
T ss_dssp CCCCCTTEEEEEETTE-EEEEESSSCCEESSCCC
T ss_pred CCCCCCCcEEEEcCCC-CEEEEcCCCCEeccCCC
Confidence 4589999999999999 59999999999999996
No 121
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=98.74 E-value=3.3e-09 Score=83.00 Aligned_cols=36 Identities=39% Similarity=0.936 Sum_probs=33.6
Q ss_pred CCCCCCceEEeCCCCCeEEEeCCCCceeccCCChhh
Q psy16327 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSER 544 (994)
Q Consensus 509 ~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~~ 544 (994)
.+||+||+++.+.+||+||+||.|++|+|++|+...
T Consensus 7 ~~LP~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~~~ 42 (46)
T 1jmq_A 7 VPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAM 42 (46)
T ss_dssp CCCCTTBCCBCCSSCCCBEEETTTTEEESSCTTTSS
T ss_pred CCCCcCcEEEEcCCCceEEEEecCCceeecCCCchh
Confidence 479999999999999999999999999999999753
No 122
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.65 E-value=1.9e-08 Score=79.29 Aligned_cols=34 Identities=41% Similarity=0.799 Sum_probs=27.2
Q ss_pred CCCCCCCCceEeecCCCCeeeeeCCCCcccccCCC
Q psy16327 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404 (994)
Q Consensus 370 ~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~ 404 (994)
...+||+||+++.|+.| +||+||.|++|+|++|.
T Consensus 16 ~~~~LPpGW~~~~D~sG-tYY~h~~T~tTQWerP~ 49 (55)
T 2e45_A 16 TDSDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPG 49 (55)
T ss_dssp SCSCCCTTEEEEEETTE-EEEEETTTCCEESSCCC
T ss_pred CCCCCCCCCeEeecCCC-CEEEEcCCCCCccCCCC
Confidence 44568888888888888 88888888888888884
No 123
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=98.65 E-value=1.3e-08 Score=79.62 Aligned_cols=36 Identities=33% Similarity=0.985 Sum_probs=27.3
Q ss_pred CCCCCCCCceEeecCCCCeeeeeCCCCcccccCCCC
Q psy16327 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQP 405 (994)
Q Consensus 370 ~~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~ 405 (994)
...+||+||+++.+++||.||+||+|++|+|++|.+
T Consensus 5 ~~~~LP~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~ 40 (46)
T 1jmq_A 5 DDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRK 40 (46)
T ss_dssp SSCCCCTTBCCBCCSSCCCBEEETTTTEEESSCTTT
T ss_pred CCCCCCcCcEEEEcCCCceEEEEecCCceeecCCCc
Confidence 345678888887778888888888888888887754
No 124
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=98.64 E-value=1.6e-08 Score=81.51 Aligned_cols=31 Identities=45% Similarity=0.970 Sum_probs=16.4
Q ss_pred CCCCCceEeecC-CCCeeeeeCCCCcccccCC
Q psy16327 373 PLPPGWEIRQDT-YGRRYYVDHNTRSSSWERP 403 (994)
Q Consensus 373 ~lp~~w~~~~~~-~G~~yy~n~~t~~t~w~~P 403 (994)
+||+||+++.+. .||+||||+.|++|+|++|
T Consensus 7 ~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P 38 (54)
T 2jv4_A 7 GLPAGWEVRHSNSKNLPYYFNPATRESRWEPP 38 (54)
T ss_dssp CCCSSCCEEECSSSSCEEEEETTTTEEESSCC
T ss_pred CCCCCcEEEEECCCCCEEEEECCCCcEEecCC
Confidence 455555555544 4555555555555555555
No 125
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=98.64 E-value=2.2e-08 Score=80.64 Aligned_cols=35 Identities=34% Similarity=0.842 Sum_probs=32.3
Q ss_pred CCCCCCceEEeCC-CCCeEEEeCCCCceeccCCChh
Q psy16327 509 QPLPPGWELRRDP-RGRVYYVDHNTRSTTWQRPNSE 543 (994)
Q Consensus 509 ~~lp~gW~~~~~~-~gr~yy~~~~t~~t~w~~P~~~ 543 (994)
.+||+||+++.+. .||+||+|+.|++|+|++|...
T Consensus 6 ~~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~ 41 (54)
T 2jv4_A 6 TGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADT 41 (54)
T ss_dssp CCCCSSCCEEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred CCCCCCcEEEEECCCCCEEEEECCCCcEEecCCCCc
Confidence 4799999999987 7999999999999999999864
No 126
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=98.62 E-value=6.8e-08 Score=91.66 Aligned_cols=92 Identities=22% Similarity=0.298 Sum_probs=73.6
Q ss_pred CCCCeEEEeeccCC---ceee-eeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhhhcc---c
Q psy16327 149 KPNPYIELYVDYKN---PKTT-RVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH---Y 221 (994)
Q Consensus 149 ~~dPyv~v~~~g~~---~~kT-~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~---~ 221 (994)
..||||.|.|+... ..|| ..++||+.|.|||.|+..|.+..+|.|.||.. .. +|+.+++|.+.+|++. .
T Consensus 31 ~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~Gr~l~i~Vfh~-a~---~fVAn~tV~~edL~~~ck~~ 106 (138)
T 2enj_A 31 AVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKGRVMQIIVKGK-NV---DLISETTVELYSLAERCRKN 106 (138)
T ss_dssp CCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSSCEEEEEEECS-SC---SCCEEEEEESHHHHHHHHHT
T ss_pred cCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECCeEEEEEEEcC-CC---CeeeEEEEEHHHHHhhhccC
Confidence 47999999997542 3788 88899999999999999999999999999944 33 7999999999999976 4
Q ss_pred CCccceEEEEeecCCCCCCCCCeEEEecCCc
Q psy16327 222 NGKCEHLEITLDLMNDSRVSPPLMSVEMPPL 252 (994)
Q Consensus 222 ~~~~~~~~~~l~L~~~~~~~~G~l~v~~~~~ 252 (994)
++. .+++++|+ ..|+|.|.+...
T Consensus 107 ~g~---~e~WvdLe-----P~Gkl~v~i~~~ 129 (138)
T 2enj_A 107 NGK---TEIWLELK-----PQGRMLMNARYF 129 (138)
T ss_dssp TTC---EEEEEECB-----SSCEEEEEEEEC
T ss_pred CCc---eEEEEecc-----cCcEEEEEEEEE
Confidence 433 34556665 478877776554
No 127
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Probab=98.60 E-value=9.8e-08 Score=89.45 Aligned_cols=90 Identities=18% Similarity=0.220 Sum_probs=71.0
Q ss_pred CCCCeEEEeeccCC---ceee-eeecCCCCCCcceEEEEEecCCCeEEEEEecCCCCCCCcccceEEeehhhhhcc---c
Q psy16327 149 KPNPYIELYVDYKN---PKTT-RVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAH---Y 221 (994)
Q Consensus 149 ~~dPyv~v~~~g~~---~~kT-~v~k~tlnP~Wne~f~~~v~~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~~---~ 221 (994)
..||||.|.++... ..|| ..++||+.|.|||.|+..|.+..+|.|.||... . +|+.+++|.+.+|+.. .
T Consensus 26 ~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~Gr~l~i~Vfh~a-~---~fvAn~tV~~edL~~~c~~~ 101 (126)
T 1yrk_A 26 ANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAA-E---EPVSEVTVGVSVLAERCKKN 101 (126)
T ss_dssp SCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTTCEEEEEEEEET-T---EEEEEEEEEHHHHHHHHHTT
T ss_pred cCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCCEEEEEEEEcCC-C---CeeeEEEEEHHHHHhhhccC
Confidence 47999999997432 2366 888999999999999999999999999999542 2 7999999999999976 3
Q ss_pred CCccceEEEEeecCCCCCCCCCeEEEecC
Q psy16327 222 NGKCEHLEITLDLMNDSRVSPPLMSVEMP 250 (994)
Q Consensus 222 ~~~~~~~~~~l~L~~~~~~~~G~l~v~~~ 250 (994)
++ . .+++++|+ ..|+|.|.+.
T Consensus 102 ~g-~--~e~WvdLe-----P~Gkl~~~i~ 122 (126)
T 1yrk_A 102 NG-K--AEFWLDLQ-----PQAKVLMSVQ 122 (126)
T ss_dssp TT-E--EEEEEECB-----SSCEEEEEEE
T ss_pred CC-c--eEEEEecc-----cCcEEEEEEE
Confidence 33 2 34566665 4788777653
No 128
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.59 E-value=3.2e-08 Score=78.06 Aligned_cols=36 Identities=36% Similarity=0.741 Sum_probs=32.8
Q ss_pred CCCCCCCCCceEEeCCCCCeEEEeCCCCceeccCCCh
Q psy16327 506 ERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS 542 (994)
Q Consensus 506 ~~~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~ 542 (994)
+.+.+||+||+++.|..| +||+||.|++|||++|..
T Consensus 15 ~~~~~LPpGW~~~~D~sG-tYY~h~~T~tTQWerP~~ 50 (55)
T 2e45_A 15 ETDSDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR 50 (55)
T ss_dssp CSCSCCCTTEEEEEETTE-EEEEETTTCCEESSCCCC
T ss_pred cCCCCCCCCCeEeecCCC-CEEEEcCCCCCccCCCCC
Confidence 345689999999999999 999999999999999974
No 129
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.57 E-value=6.1e-08 Score=73.14 Aligned_cols=35 Identities=26% Similarity=0.574 Sum_probs=30.7
Q ss_pred CCCCCCceEeecCCCCeeeeeCCCCcccccCCCCC
Q psy16327 372 EPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPL 406 (994)
Q Consensus 372 ~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~l 406 (994)
.++|++|.++.+++|+.||||..|++++|++|.++
T Consensus 6 ~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~~~ 40 (40)
T 2ysi_A 6 SGTEEIWVENKTPDGKVYYYNARTRESAWTKPDGV 40 (40)
T ss_dssp CCCCCSEEEEECTTSCEEEEETTTCCEESSCCSCC
T ss_pred CCCCCCCEEEECCCCCEEEEECCCCCEEeCCCCCC
Confidence 45778899999999999999999999999999653
No 130
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=98.55 E-value=4.9e-08 Score=119.85 Aligned_cols=74 Identities=19% Similarity=0.337 Sum_probs=65.1
Q ss_pred CCCCCCeEEEeec----cCCceeeeeecCCCCCCcceEEEEEecC---CCeEEEEEecCCCCCCCcccceEEeehhhhhc
Q psy16327 147 LLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLVSP---YSIILFRLLDHRTFRRDCTIGEKRLNIYGVLA 219 (994)
Q Consensus 147 f~~~dPyv~v~~~----g~~~~kT~v~k~tlnP~Wne~f~~~v~~---~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~~ 219 (994)
+.++||||++.+. +..++||+++++|+||.|||.|.|.+.. ...|.|.|||+|.+++|++||++.|+|+++..
T Consensus 190 ~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~ 269 (674)
T 3pfq_A 190 NGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQK 269 (674)
T ss_dssp TSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCSSSCCEECCBCCCBTTHHHH
T ss_pred ccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecccccccccccccccchhhhcc
Confidence 4679999999982 3457899999999999999999998764 34799999999999999999999999999976
Q ss_pred c
Q psy16327 220 H 220 (994)
Q Consensus 220 ~ 220 (994)
.
T Consensus 270 ~ 270 (674)
T 3pfq_A 270 A 270 (674)
T ss_dssp C
T ss_pred C
Confidence 4
No 131
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=98.46 E-value=1.3e-07 Score=70.23 Aligned_cols=33 Identities=33% Similarity=0.720 Sum_probs=28.1
Q ss_pred CCCCceEeecCCCCeeeeeCCCCcccccCCCCC
Q psy16327 374 LPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPL 406 (994)
Q Consensus 374 lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~~l 406 (994)
..++|.++.+++|+.||||..|++|+|++|.+|
T Consensus 4 ~~~~W~e~~~~~G~~YYyN~~T~es~We~P~~~ 36 (37)
T 1e0l_A 4 AVSEWTEYKTADGKTYYYNNRTLESTWEKPQEL 36 (37)
T ss_dssp SSCSCEEEECTTSCEEEEETTTTEEESSCCSSC
T ss_pred CCCCeEEEECCCCCEEEEECCCCCEEecCCCcc
Confidence 456799999999999999999999999998765
No 132
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=98.39 E-value=2.6e-07 Score=114.46 Aligned_cols=91 Identities=16% Similarity=0.254 Sum_probs=69.2
Q ss_pred CCCCeEEEeeccC-----CceeeeeecC-CCCCCcce-EEEEE-ec--CCCeEEEEEecCCCCCCCcccceEEeehhhhh
Q psy16327 149 KPNPYIELYVDYK-----NPKTTRVVKN-TYQPKWNE-EFTVL-VS--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGVL 218 (994)
Q Consensus 149 ~~dPyv~v~~~g~-----~~~kT~v~k~-tlnP~Wne-~f~~~-v~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~~ 218 (994)
++||||+|.+.|. .++||+++++ ++||+||| .|.|. |. +...|.|.|||+| |+|||.+.|+|..|.
T Consensus 741 ~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d----ddfiG~~~lpL~~L~ 816 (885)
T 3ohm_B 741 KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG----GKFVGHRILPVSAIR 816 (885)
T ss_dssp CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT----TEEEEEEEEETTTCC
T ss_pred CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC----ccEEeeEEEEHHHcC
Confidence 6899999999762 3578999976 59999999 59986 53 3468999999997 789999999999884
Q ss_pred cccCCccceEEEEeecCCCCCC--CCCeEEEecCC
Q psy16327 219 AHYNGKCEHLEITLDLMNDSRV--SPPLMSVEMPP 251 (994)
Q Consensus 219 ~~~~~~~~~~~~~l~L~~~~~~--~~G~l~v~~~~ 251 (994)
.. - -.+.|.+..+. ..|.|.|.+..
T Consensus 817 ~G------y--R~vpL~~~~g~~l~~atLfv~i~~ 843 (885)
T 3ohm_B 817 SG------Y--HYVCLRNEANQPLCLPALLIYTEA 843 (885)
T ss_dssp CE------E--EEEEEECTTSCEEEEEEEEEEEEE
T ss_pred CC------c--eEEEecCCCCCccCceEEEEEEEE
Confidence 32 1 24667765554 35667776654
No 133
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=98.32 E-value=2.1e-07 Score=70.66 Aligned_cols=33 Identities=30% Similarity=0.732 Sum_probs=26.1
Q ss_pred CCCCCCceEeecCCCCeeeeeCCCCcccccCCC
Q psy16327 372 EPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404 (994)
Q Consensus 372 ~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~ 404 (994)
.++|++|.++.+++|+.||||..|++++|++|.
T Consensus 8 ~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~ 40 (41)
T 1ywi_A 8 GSAKSMWTEHKSPDGRTYYYNTETKQSTWEKPD 40 (41)
T ss_dssp ----CCEEEEEETTTEEEEEETTTTEEEESCC-
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCCEEeCCCC
Confidence 456788999999999999999999999999984
No 134
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=98.31 E-value=5.8e-07 Score=110.82 Aligned_cols=90 Identities=16% Similarity=0.248 Sum_probs=68.0
Q ss_pred CCCCeEEEeeccC------CceeeeeecC-CCCCCcceE-EEEE-ec--CCCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327 149 KPNPYIELYVDYK------NPKTTRVVKN-TYQPKWNEE-FTVL-VS--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGV 217 (994)
Q Consensus 149 ~~dPyv~v~~~g~------~~~kT~v~k~-tlnP~Wne~-f~~~-v~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~ 217 (994)
++||||+|.+.|. +++||+++++ ++||+|||+ |.|. |. +...|.|.|||++ |+|||.+.|+|+.|
T Consensus 666 ~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d----ddfiG~~~ipL~~L 741 (816)
T 3qr0_A 666 QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN----GKFIGHRVMPLDGI 741 (816)
T ss_dssp CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT----SCEEEEEEEESTTC
T ss_pred CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEecC----CCeeeEEEEEHHHc
Confidence 5899999999762 3578999886 599999998 9987 64 3468999999985 78999999999988
Q ss_pred hcccCCccceEEEEeecCCCCCCC--CCeEEEecC
Q psy16327 218 LAHYNGKCEHLEITLDLMNDSRVS--PPLMSVEMP 250 (994)
Q Consensus 218 ~~~~~~~~~~~~~~l~L~~~~~~~--~G~l~v~~~ 250 (994)
... - -.+.|.+..+.. .+.|.|.+.
T Consensus 742 ~~G------y--R~vpL~~~~g~~~~~atLfv~i~ 768 (816)
T 3qr0_A 742 KPG------Y--RHVPLRNESNRPLGLASVFAHIV 768 (816)
T ss_dssp CCE------E--EEEEEECTTSCEEEEEEEEEEEE
T ss_pred CCc------c--eEEEEeCCCCCCCCceEEEEEEE
Confidence 442 1 346677655543 245666554
No 135
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=98.25 E-value=1e-06 Score=109.12 Aligned_cols=67 Identities=15% Similarity=0.281 Sum_probs=55.7
Q ss_pred CCCCeEEEeeccC-----Cceeee-eec-CCCCCCcce-EEEE-Eec--CCCeEEEEEecCCCCCCCcccceEEeehhhh
Q psy16327 149 KPNPYIELYVDYK-----NPKTTR-VVK-NTYQPKWNE-EFTV-LVS--PYSIILFRLLDHRTFRRDCTIGEKRLNIYGV 217 (994)
Q Consensus 149 ~~dPyv~v~~~g~-----~~~kT~-v~k-~tlnP~Wne-~f~~-~v~--~~~~l~~~V~D~d~~~~d~~lG~~~i~l~~~ 217 (994)
++||||+|.+.|. +++||+ +++ +++||+||| .|.| .|. +...|.|.|||+| |++||.+.|+|+.|
T Consensus 694 ~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d----~d~iG~~~ipl~~L 769 (799)
T 2zkm_X 694 SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG----NKFLGHRIIPINAL 769 (799)
T ss_dssp CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT----TEEEEEEEEEGGGB
T ss_pred CCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEEEeC----CCccceEeeehhhc
Confidence 5899999999652 357899 776 569999999 6999 664 3458999999996 78999999999998
Q ss_pred hc
Q psy16327 218 LA 219 (994)
Q Consensus 218 ~~ 219 (994)
..
T Consensus 770 ~~ 771 (799)
T 2zkm_X 770 NS 771 (799)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 136
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=98.20 E-value=3.3e-07 Score=73.18 Aligned_cols=34 Identities=26% Similarity=0.548 Sum_probs=31.1
Q ss_pred CCCCCceEEeCC-CCCeEEEeCCCCceeccCCChh
Q psy16327 510 PLPPGWELRRDP-RGRVYYVDHNTRSTTWQRPNSE 543 (994)
Q Consensus 510 ~lp~gW~~~~~~-~gr~yy~~~~t~~t~w~~P~~~ 543 (994)
.||+||+++++. .||+||+|+.|++++|++|+..
T Consensus 10 ~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~~ 44 (52)
T 2jx8_A 10 LVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLG 44 (52)
T ss_dssp HHHHTCCEEEETTTTEEEEEETTTTEEESSCCCCT
T ss_pred CCCcCcEEEEccccCCEEEEECCCCCEEeCCCCCC
Confidence 599999999986 6999999999999999999853
No 137
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=98.20 E-value=2.6e-07 Score=73.81 Aligned_cols=33 Identities=36% Similarity=0.629 Sum_probs=27.5
Q ss_pred CCCCCCceEeecC-CCCeeeeeCCCCcccccCCC
Q psy16327 372 EPLPPGWEIRQDT-YGRRYYVDHNTRSSSWERPQ 404 (994)
Q Consensus 372 ~~lp~~w~~~~~~-~G~~yy~n~~t~~t~w~~P~ 404 (994)
..||+||+++.+. +||.||||+.|++|+|++|.
T Consensus 9 ~~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~ 42 (52)
T 2jx8_A 9 ELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPV 42 (52)
T ss_dssp HHHHHTCCEEEETTTTEEEEEETTTTEEESSCCC
T ss_pred CCCCcCcEEEEccccCCEEEEECCCCCEEeCCCC
Confidence 4588899988875 78888888888888888884
No 138
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=98.19 E-value=5.4e-07 Score=96.53 Aligned_cols=36 Identities=28% Similarity=0.678 Sum_probs=33.8
Q ss_pred CCCCCCceEEeCCCCCeEEEeCCCCceeccCCChhh
Q psy16327 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSER 544 (994)
Q Consensus 509 ~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~~~~ 544 (994)
.+||+|||++++++|++||+||+|++|+|+||+...
T Consensus 10 ~~l~~~we~~~~~~~~~y~~~h~~~tt~w~~p~~~~ 45 (261)
T 1eg3_A 10 TSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTE 45 (261)
T ss_dssp TTCCTTEEEEECTTSCEEEEETTTTEEESSCHHHHH
T ss_pred CCCCCCcceeECCCCCeEeecCCcccccCCCCchhh
Confidence 489999999999999999999999999999999754
No 139
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=98.12 E-value=7.6e-07 Score=95.35 Aligned_cols=36 Identities=33% Similarity=0.828 Sum_probs=34.1
Q ss_pred CCCCCCceEEEcCCCceEEEecCCcccccCCCCccc
Q psy16327 595 GSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQG 630 (994)
Q Consensus 595 ~~LP~gWe~~~~~~g~vyfvnh~t~~t~w~dPr~~~ 630 (994)
+|||+|||++++++|++|||||.|++|+|+|||...
T Consensus 10 ~~l~~~we~~~~~~~~~y~~~h~~~tt~w~~p~~~~ 45 (261)
T 1eg3_A 10 TSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTE 45 (261)
T ss_dssp TTCCTTEEEEECTTSCEEEEETTTTEEESSCHHHHH
T ss_pred CCCCCCcceeECCCCCeEeecCCcccccCCCCchhh
Confidence 689999999999999999999999999999999754
No 140
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.12 E-value=2.9e-06 Score=63.96 Aligned_cols=33 Identities=30% Similarity=0.775 Sum_probs=31.1
Q ss_pred CCCCCCceEEeCCCCCeEEEeCCCCceeccCCC
Q psy16327 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 541 (994)
Q Consensus 509 ~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~ 541 (994)
.++|.+|.+..+++|+.||+|..|++++|++|.
T Consensus 6 ~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~ 38 (40)
T 2ysi_A 6 SGTEEIWVENKTPDGKVYYYNARTRESAWTKPD 38 (40)
T ss_dssp CCCCCSEEEEECTTSCEEEEETTTCCEESSCCS
T ss_pred CCCCCCCEEEECCCCCEEEEECCCCCEEeCCCC
Confidence 378999999999999999999999999999996
No 141
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=98.08 E-value=1.7e-06 Score=86.78 Aligned_cols=36 Identities=44% Similarity=1.037 Sum_probs=29.1
Q ss_pred CCCCCCCceEEeC-CCCCeEEEeCCCCceeccCCChh
Q psy16327 508 PQPLPPGWELRRD-PRGRVYYVDHNTRSTTWQRPNSE 543 (994)
Q Consensus 508 ~~~lp~gW~~~~~-~~gr~yy~~~~t~~t~w~~P~~~ 543 (994)
..+||+||+++++ ..|++||+||.|++|+|++|+..
T Consensus 7 ~~~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~ 43 (166)
T 3tc5_A 7 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGN 43 (166)
T ss_dssp ---CCTTEEEEECTTTCCEEEEETTTCCEESSCC---
T ss_pred CCCCCCCceEEEcCCCCCEEEEECCCCCEEecCCCCC
Confidence 3589999999999 47999999999999999999854
No 142
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=98.01 E-value=4.2e-06 Score=62.01 Aligned_cols=31 Identities=26% Similarity=0.728 Sum_probs=29.2
Q ss_pred CCCCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327 406 LPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 436 (994)
Q Consensus 406 lp~gW~~~~~~~g~~yy~n~~t~~t~w~~P~ 436 (994)
...+|.++.+++|+.||+|..|++++|++|.
T Consensus 4 ~~~~W~e~~~~~G~~YYyN~~T~es~We~P~ 34 (37)
T 1e0l_A 4 AVSEWTEYKTADGKTYYYNNRTLESTWEKPQ 34 (37)
T ss_dssp SSCSCEEEECTTSCEEEEETTTTEEESSCCS
T ss_pred CCCCeEEEECCCCCEEEEECCCCCEEecCCC
Confidence 5678999999999999999999999999997
No 143
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=98.00 E-value=2.6e-06 Score=85.43 Aligned_cols=32 Identities=56% Similarity=1.125 Sum_probs=20.4
Q ss_pred CCCCCCceEeecC-CCCeeeeeCCCCcccccCC
Q psy16327 372 EPLPPGWEIRQDT-YGRRYYVDHNTRSSSWERP 403 (994)
Q Consensus 372 ~~lp~~w~~~~~~-~G~~yy~n~~t~~t~w~~P 403 (994)
.+||+||+++.++ .|++|||||.|++|+|++|
T Consensus 8 ~~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P 40 (166)
T 3tc5_A 8 EKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 40 (166)
T ss_dssp --CCTTEEEEECTTTCCEEEEETTTCCEESSCC
T ss_pred CCCCCCceEEEcCCCCCEEEEECCCCCEEecCC
Confidence 4566777766663 6666666666666666666
No 144
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=97.95 E-value=4.2e-06 Score=63.43 Aligned_cols=33 Identities=30% Similarity=0.841 Sum_probs=27.5
Q ss_pred CCCCCCceEEeCCCCCeEEEeCCCCceeccCCC
Q psy16327 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 541 (994)
Q Consensus 509 ~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~ 541 (994)
..+|.+|.+..+++|++||+|..|++++|++|.
T Consensus 8 ~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~ 40 (41)
T 1ywi_A 8 GSAKSMWTEHKSPDGRTYYYNTETKQSTWEKPD 40 (41)
T ss_dssp ----CCEEEEEETTTEEEEEETTTTEEEESCC-
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCCEEeCCCC
Confidence 357899999999999999999999999999995
No 145
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.95 E-value=4.7e-06 Score=69.98 Aligned_cols=30 Identities=30% Similarity=0.623 Sum_probs=28.7
Q ss_pred CceEeecCCCCeeeeeCCCCcccccCCCCC
Q psy16327 377 GWEIRQDTYGRRYYVDHNTRSSSWERPQPL 406 (994)
Q Consensus 377 ~w~~~~~~~G~~yy~n~~t~~t~w~~P~~l 406 (994)
.|.++.+.+||+||||..|++|.|++|++|
T Consensus 21 ~W~~v~T~dGR~fyyN~~Tk~S~WekP~eL 50 (73)
T 2dk7_A 21 PWCVVWTGDERVFFYNPTTRLSMWDRPDDL 50 (73)
T ss_dssp SCEEEEESSSCEEEEETTTTEECSSCCTTT
T ss_pred CcEEEECCCCCEEEecCcccceeccCChHh
Confidence 399999999999999999999999999877
No 146
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=97.92 E-value=5.2e-06 Score=56.80 Aligned_cols=26 Identities=27% Similarity=0.562 Sum_probs=14.8
Q ss_pred CceEeecCCCCeeeeeCCCCcccccCC
Q psy16327 377 GWEIRQDTYGRRYYVDHNTRSSSWERP 403 (994)
Q Consensus 377 ~w~~~~~~~G~~yy~n~~t~~t~w~~P 403 (994)
||+ .....|+.||||..|++|+|++|
T Consensus 2 gWe-~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 2 GWE-IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred CCe-EECCCCCeEEEECCCCCEeccCC
Confidence 555 33345666666666666666555
No 147
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=97.79 E-value=1.1e-05 Score=55.24 Aligned_cols=27 Identities=30% Similarity=0.656 Sum_probs=24.3
Q ss_pred CCceeeeCCCCCeEEEeCCCCcccccCC
Q psy16327 408 PGWELRRDPRGRVYYVDHNTRSTTWQRP 435 (994)
Q Consensus 408 ~gW~~~~~~~g~~yy~n~~t~~t~w~~P 435 (994)
+||+ .....|+.||+|..|++++|++|
T Consensus 1 ~gWe-~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 1 PGWE-IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CCEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred CCCe-EECCCCCeEEEECCCCCEeccCC
Confidence 5899 66669999999999999999988
No 148
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=97.79 E-value=1.2e-05 Score=63.45 Aligned_cols=36 Identities=25% Similarity=0.513 Sum_probs=30.5
Q ss_pred CceEeecCCCCeeeeeCCCCcccccCCCCCCCCcee
Q psy16327 377 GWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPGWEL 412 (994)
Q Consensus 377 ~w~~~~~~~G~~yy~n~~t~~t~w~~P~~lp~gW~~ 412 (994)
.|.++.+++|+.||||..|++++|++|..+-..-++
T Consensus 8 ~W~e~~s~~G~~YYyN~~T~eS~WekP~~~~~~~~~ 43 (50)
T 2dk1_A 8 RWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKK 43 (50)
T ss_dssp CEEECCCSTTCCCEEESSSCCEESSCCTTCCCCCST
T ss_pred CeEEEECCCCCEEEEECCCCCEEeeCChhhhhhHHh
Confidence 599999999999999999999999999877544433
No 149
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=97.01 E-value=2.1e-05 Score=73.89 Aligned_cols=39 Identities=5% Similarity=-0.115 Sum_probs=22.1
Q ss_pred CccChhhhhhcceeCC-ccCCC----cceeeEEEEe--cCcccccc
Q psy16327 99 QEIDVEDWQRNAIYRH-YTRNS----KQTTRVVKNT--YQPKWNEE 137 (994)
Q Consensus 99 ~~id~~~l~~~t~y~g-y~~~s----~~i~~fw~~f--~~~~e~~~ 137 (994)
+-|||+|||+||.|+| |..++ ++|+|||++. |++++|+.
T Consensus 2 ~~~Dv~dLr~~T~Y~~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~ 47 (118)
T 3pt3_A 2 PLGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQD 47 (118)
T ss_dssp ----------CCEEEECSCCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred CccCHHHHHhhcEEcCCcCCCccccchHHHHHHHHHHHCCHHHHHH
Confidence 4589999999999996 66666 9999999973 45555555
No 150
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=96.99 E-value=0.00029 Score=55.59 Aligned_cols=29 Identities=24% Similarity=0.596 Sum_probs=27.5
Q ss_pred CCceeeeCCCCCeEEEeCCCCcccccCCc
Q psy16327 408 PGWELRRDPRGRVYYVDHNTRSTTWQRPN 436 (994)
Q Consensus 408 ~gW~~~~~~~g~~yy~n~~t~~t~w~~P~ 436 (994)
..|.++.+++|+.||||..|++++|++|.
T Consensus 7 ~~W~e~~s~~G~~YYyN~~T~eS~WekP~ 35 (50)
T 2dk1_A 7 GRWVEGITSEGYHYYYDLISGASQWEKPE 35 (50)
T ss_dssp CCEEECCCSTTCCCEEESSSCCEESSCCT
T ss_pred CCeEEEECCCCCEEEEECCCCCEEeeCCh
Confidence 46999999999999999999999999997
No 151
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.97 E-value=0.00037 Score=58.58 Aligned_cols=30 Identities=27% Similarity=0.668 Sum_probs=28.1
Q ss_pred CCceeeeCCCCCeEEEeCCCCcccccCCch
Q psy16327 408 PGWELRRDPRGRVYYVDHNTRSTTWQRPNS 437 (994)
Q Consensus 408 ~gW~~~~~~~g~~yy~n~~t~~t~w~~P~~ 437 (994)
..|.++.+.+||+||||..|+++.|++|..
T Consensus 20 t~W~~v~T~dGR~fyyN~~Tk~S~WekP~e 49 (73)
T 2dk7_A 20 TPWCVVWTGDERVFFYNPTTRLSMWDRPDD 49 (73)
T ss_dssp SSCEEEEESSSCEEEEETTTTEECSSCCTT
T ss_pred CCcEEEECCCCCEEEecCcccceeccCChH
Confidence 469999999999999999999999999974
No 152
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=94.91 E-value=0.02 Score=57.83 Aligned_cols=32 Identities=38% Similarity=0.929 Sum_probs=19.1
Q ss_pred CCCCCceEeecC-CCCeeeeeCCCCcccccCCC
Q psy16327 373 PLPPGWEIRQDT-YGRRYYVDHNTRSSSWERPQ 404 (994)
Q Consensus 373 ~lp~~w~~~~~~-~G~~yy~n~~t~~t~w~~P~ 404 (994)
.||+||+.+.+. .|+.||+|..|++.+|++|.
T Consensus 7 ~lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~ 39 (177)
T 1yw5_A 7 GLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPY 39 (177)
T ss_dssp CCCTTEEEEECSSTTCEEEEETTTCCEESSCCT
T ss_pred CCCchHHHHhcccCCchhhhhHHHhhHhhcCcc
Confidence 366666666554 56666666666666666553
No 153
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=94.55 E-value=0.028 Score=56.65 Aligned_cols=33 Identities=27% Similarity=0.848 Sum_probs=30.4
Q ss_pred CCCCCceEEeCCC-CCeEEEeCCCCceeccCCCh
Q psy16327 510 PLPPGWELRRDPR-GRVYYVDHNTRSTTWQRPNS 542 (994)
Q Consensus 510 ~lp~gW~~~~~~~-gr~yy~~~~t~~t~w~~P~~ 542 (994)
.||+||+.+.+.. |+.||+|..|++.+|+.|..
T Consensus 7 ~lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~ 40 (177)
T 1yw5_A 7 GLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYG 40 (177)
T ss_dssp CCCTTEEEEECSSTTCEEEEETTTCCEESSCCTT
T ss_pred CCCchHHHHhcccCCchhhhhHHHhhHhhcCccc
Confidence 5999999999876 99999999999999999863
No 154
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=89.83 E-value=0.4 Score=39.98 Aligned_cols=35 Identities=34% Similarity=0.785 Sum_probs=32.2
Q ss_pred CCCCCCCCceEEeCCCCCeEEEeCCCCceeccCCC
Q psy16327 507 RPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 541 (994)
Q Consensus 507 ~~~~lp~gW~~~~~~~gr~yy~~~~t~~t~w~~P~ 541 (994)
...+||.||-+.....|-+-|++..||..||.+|=
T Consensus 25 ~~~~LPeGW~~v~H~SGmP~YlH~~trV~T~SrPY 59 (79)
T 3le4_A 25 PTEPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPY 59 (79)
T ss_dssp CCCCCCTTEEEEECTTSSEEEEETTTTEEESSCCC
T ss_pred cCCcCCCccEEEEecCCceEEEeccceEEeccCCe
Confidence 35689999999999999999999999999999995
No 155
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=86.72 E-value=0.81 Score=38.20 Aligned_cols=34 Identities=35% Similarity=0.819 Sum_probs=23.5
Q ss_pred CCCCCCCceEeecCCCCeeeeeCCCCcccccCCC
Q psy16327 371 EEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404 (994)
Q Consensus 371 ~~~lp~~w~~~~~~~G~~yy~n~~t~~t~w~~P~ 404 (994)
-.+||.||..-.-..|-.-|++..|+..||.+|-
T Consensus 26 ~~~LPeGW~~v~H~SGmP~YlH~~trV~T~SrPY 59 (79)
T 3le4_A 26 TEPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPY 59 (79)
T ss_dssp CCCCCTTEEEEECTTSSEEEEETTTTEEESSCCC
T ss_pred CCcCCCccEEEEecCCceEEEeccceEEeccCCe
Confidence 3567777777666677777777777777777773
No 156
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=55.84 E-value=46 Score=32.35 Aligned_cols=93 Identities=17% Similarity=0.136 Sum_probs=62.5
Q ss_pred CCeEEEe--eccCCceeeeeecCCCCCCcceEEEEEecCC---------CeEEEEEecCCCCCCC-cccceEEeehhhhh
Q psy16327 151 NPYIELY--VDYKNPKTTRVVKNTYQPKWNEEFTVLVSPY---------SIILFRLLDHRTFRRD-CTIGEKRLNIYGVL 218 (994)
Q Consensus 151 dPyv~v~--~~g~~~~kT~v~k~tlnP~Wne~f~~~v~~~---------~~l~~~V~D~d~~~~d-~~lG~~~i~l~~~~ 218 (994)
+|..-++ .-+.++..|-+++ .++|..|.+-.+.|..+ ..|.++|..- .+.+ ..||.+.|+|.+++
T Consensus 41 ~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELhqa--~g~~~~tla~~~I~l~~lL 117 (156)
T 2yrb_A 41 EPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQA--YSTEYETIAACQLKFHEIL 117 (156)
T ss_dssp CCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEEEE--CSSCEEEEEEEEECCSHHH
T ss_pred CCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEEEe--eCCCceEEEEEEEEhHHhh
Confidence 4544444 4456678888888 77999999999988643 2566666664 3344 68999999999999
Q ss_pred cccCCccceEEEEeecCCCCC--CCCCeEEEecC
Q psy16327 219 AHYNGKCEHLEITLDLMNDSR--VSPPLMSVEMP 250 (994)
Q Consensus 219 ~~~~~~~~~~~~~l~L~~~~~--~~~G~l~v~~~ 250 (994)
+... .+.-...|...++ ...|.|..-+.
T Consensus 118 e~~~----~i~g~~~L~g~~g~~~~~G~LeywiR 147 (156)
T 2yrb_A 118 EKSG----RIFCTASLIGTKGDIPNFGTVEYWFR 147 (156)
T ss_dssp HCCS----CEEEEEEECBSSSCCTTSEEEEEEEE
T ss_pred CcCC----ceEEEEEEEcCCCCcceEEEEEEEEE
Confidence 7633 2224456666555 46786555443
No 157
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=37.18 E-value=44 Score=41.89 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=34.2
Q ss_pred CCCeEEEee--ccCC---ceeeeeecCCCCCCcceEEEEEec-----CCCeEEEEEecCC
Q psy16327 150 PNPYIELYV--DYKN---PKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLDHR 199 (994)
Q Consensus 150 ~dPyv~v~~--~g~~---~~kT~v~k~tlnP~Wne~f~~~v~-----~~~~l~~~V~D~d 199 (994)
.+=||.+.+ ||+. ...|+.+....+|.|||.++|.+. ..+.|+|.||+..
T Consensus 235 ~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~ 294 (940)
T 2wxf_A 235 MKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVV 294 (940)
T ss_dssp CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC
T ss_pred ceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEec
Confidence 345555444 4422 455665655668999999999664 3579999999963
No 158
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=37.11 E-value=27 Score=29.66 Aligned_cols=29 Identities=31% Similarity=0.627 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCceEEeCC--------CCCeEEEeCCC
Q psy16327 504 SWERPQPLPPGWELRRDP--------RGRVYYVDHNT 532 (994)
Q Consensus 504 ~~~~~~~lp~gW~~~~~~--------~gr~yy~~~~t 532 (994)
.|.....||.||...+-. ...+||++...
T Consensus 4 ~~~~~p~LP~GW~Re~~~R~~g~s~gk~DvyY~sP~G 40 (75)
T 1d9n_A 4 DWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTG 40 (75)
T ss_dssp CCEECTTTCSSCEEEECSSSSSCTTCCCCEEEECSSS
T ss_pred ccccCCCCCCCCEEEEEEecCCCCCCceEEEEECCCC
Confidence 355566899999876543 23689998843
No 159
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=30.25 E-value=74 Score=40.32 Aligned_cols=67 Identities=13% Similarity=0.261 Sum_probs=40.9
Q ss_pred CCCeEEEee--ccCCc---eeeeeecCCCCCCcceEEEEEec-----CCCeEEEEEecCCCCC----CCcccceEEeehh
Q psy16327 150 PNPYIELYV--DYKNP---KTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLDHRTFR----RDCTIGEKRLNIY 215 (994)
Q Consensus 150 ~dPyv~v~~--~g~~~---~kT~v~k~tlnP~Wne~f~~~v~-----~~~~l~~~V~D~d~~~----~d~~lG~~~i~l~ 215 (994)
.+-||.+.+ ||+.- .+|+.+ ...+|.|||.++|.+. ..+.|+|.||+...-+ +...||-+++.|-
T Consensus 375 ~~~~V~~~l~hG~~~L~~~~~T~~~-~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~~~~~~~~~~~~~lg~~n~~lf 453 (1091)
T 3hhm_A 375 DKIYVRTGIYHGGEPLCDNVNTQRV-PCSNPRWNEWLNYDIYIPDLPRAARLCLSICSVKGRKGAKEEHCPLAWGNINLF 453 (1091)
T ss_dssp CCCCEEEEEESSSCSSCCEECCCCC-CTTSCEEEEEEEEEEEGGGCCTTCEEEEEECCCCCCC-------CCEEEEEESB
T ss_pred ceEEEEEEEEECCEEccCceecccc-CCCCCCCCeeEEecCccccCChhcEEEEEEEEecCccCcccccceeEEeeeeeE
Confidence 455777655 55432 334333 3457889999999664 3579999999965421 2245666666665
Q ss_pred hh
Q psy16327 216 GV 217 (994)
Q Consensus 216 ~~ 217 (994)
+.
T Consensus 454 d~ 455 (1091)
T 3hhm_A 454 DY 455 (1091)
T ss_dssp CT
T ss_pred cc
Confidence 44
No 160
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=27.36 E-value=45 Score=41.84 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=31.4
Q ss_pred CCCeEEEee--ccCCc--eeeeeecCCCCCCcceEEEEEec-----CCCeEEEEEecCC
Q psy16327 150 PNPYIELYV--DYKNP--KTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLDHR 199 (994)
Q Consensus 150 ~dPyv~v~~--~g~~~--~kT~v~k~tlnP~Wne~f~~~v~-----~~~~l~~~V~D~d 199 (994)
++-||.+.+ ||+.- .+|+.+.-+-+|.|||.++|.+. ..+.|+|.||+..
T Consensus 238 ~~~~V~~~l~~G~~~l~~~~t~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~ 296 (961)
T 1e7u_A 238 LTVFVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCGA 296 (961)
T ss_dssp EEEEEEEEEEETTEEEEEEECCCEECCSEEEEEEEEEEEEEGGGCCTTCEEEEEEEEEE
T ss_pred ceEEEEEEEEECCEEcccceeeccccCCCcccceeEEeccccccCCcccEEEEEEEecc
Confidence 345555443 44322 23443333447999999998554 3579999999864
No 161
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=27.21 E-value=1.1e+02 Score=31.48 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=37.3
Q ss_pred CceeeeeecCCCCCCcceEEEEEecC----CCeEEEEEecCCCCC----CCcccceEEeehh
Q psy16327 162 NPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFR----RDCTIGEKRLNIY 215 (994)
Q Consensus 162 ~~~kT~v~k~tlnP~Wne~f~~~v~~----~~~l~~~V~D~d~~~----~d~~lG~~~i~l~ 215 (994)
...+|.|..-+-+|.|+|++.+.+-. ...|.|.++....-. .+..+|-+-++|-
T Consensus 77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~ 138 (220)
T 3l4c_A 77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM 138 (220)
T ss_dssp SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence 36788888888899999999996653 458999987543221 1234566666653
No 162
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=22.48 E-value=48 Score=27.83 Aligned_cols=11 Identities=45% Similarity=1.168 Sum_probs=6.8
Q ss_pred CCCCCceEeec
Q psy16327 373 PLPPGWEIRQD 383 (994)
Q Consensus 373 ~lp~~w~~~~~ 383 (994)
+||+||....-
T Consensus 12 ~Lp~GW~R~~~ 22 (72)
T 2ky8_A 12 ALPPGWKKEEV 22 (72)
T ss_dssp SSCTTCEEEEE
T ss_pred CCCCCCEEEEE
Confidence 56777765443
No 163
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=20.63 E-value=74 Score=26.94 Aligned_cols=37 Identities=27% Similarity=0.512 Sum_probs=21.5
Q ss_pred cccCCCCCCCCceeeeCC--------CCCeEEEeCCCCcccccCCc
Q psy16327 399 SWERPQPLPPGWELRRDP--------RGRVYYVDHNTRSTTWQRPN 436 (994)
Q Consensus 399 ~w~~P~~lp~gW~~~~~~--------~g~~yy~n~~t~~t~w~~P~ 436 (994)
+|..=..||+||++..-. ..-+||++. ++..-..++.
T Consensus 4 ~~~~~p~LP~GW~Re~~~R~~g~s~gk~DvyY~sP-~Gkk~RS~~e 48 (75)
T 1d9n_A 4 DWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSP-TGDRIRSKVE 48 (75)
T ss_dssp CCEECTTTCSSCEEEECSSSSSCTTCCCCEEEECS-SSCEECSTHH
T ss_pred ccccCCCCCCCCEEEEEEecCCCCCCceEEEEECC-CCCeeecHHH
Confidence 343333688888665533 233799998 6655444444
Done!