RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16327
(994 letters)
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 429
Score = 373 bits (961), Expect = e-120
Identities = 129/271 (47%), Positives = 176/271 (64%), Gaps = 6/271 (2%)
Query: 637 GADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRW 696
+ PLP GWE+R T YFVDHNT++TT++DPR Y+R FR
Sbjct: 3 ASQLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRL-----PSSLDQNVPQYKRDFRR 57
Query: 697 KLSQFRYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGLDYG 756
K+ FR +LP I V R+ +FED+Y ++MR +L++RL I F GEEGLDYG
Sbjct: 58 KVIYFRSQPALRILPGQCHIKVRRKNIFEDAYQEIMRQTPEDLKKRLMIKFDGEEGLDYG 117
Query: 757 GVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALY 816
GVSRE+FFLLSHE+ NP YCLFEY+ +NY++QINP S +NP+HL YFKFIGR + + ++
Sbjct: 118 GVSREFFFLLSHEMFNPFYCLFEYSAYDNYTIQINPNSGINPEHLNYFKFIGRVVGLGVF 177
Query: 817 HGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFE 876
H RF+ + F YK ML KK+V++D+E +D E YNSL W+ +N+ID L+L S D E
Sbjct: 178 HRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEVYNSLNWMLENSIDGV-LDLTFSADDE 236
Query: 877 ILGQVIHHELKENGDKIRVCEENKEEYMRWY 907
G+V+ +LK +G I V + NK+EY+ Y
Sbjct: 237 RFGEVVTVDLKPDGRNIEVTDGNKKEYVELY 267
Score = 126 bits (318), Expect = 4e-31
Identities = 34/72 (47%), Positives = 52/72 (72%)
Query: 50 YPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRN 109
Y L T+WR+ ++EQ KAF+DGFNE++P + + FDERELEL++ G+ EID+EDW+++
Sbjct: 263 YVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKH 322
Query: 110 AIYRHYTRNSKQ 121
YR Y + +
Sbjct: 323 TDYRGYQESDEV 334
Score = 108 bits (271), Expect = 5e-25
Identities = 33/51 (64%), Positives = 38/51 (74%)
Query: 944 RFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQE 994
RF IEK G+ LP+SHTCFNR+DLP Y YD M +KL A+EET GFGQE
Sbjct: 379 RFTIEKAGEVQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEETIGFGQE 429
Score = 54.2 bits (131), Expect = 1e-07
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 398 SSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGER 450
S+ + PLP GWE+R RVY+VDHNT++TTW P Q +R
Sbjct: 1 SNASQLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLDQNVPQYKR 53
Score = 54.2 bits (131), Expect = 1e-07
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 503 SSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGER 555
S+ + PLP GWE+R RVY+VDHNT++TTW P Q +R
Sbjct: 1 SNASQLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLDQNVPQYKR 53
Score = 48.1 bits (115), Expect = 1e-05
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPG----WELRRDPRGRVYY 422
PLP GWE+R R Y+VDHNT++++W+ P+ + +RD R +V Y
Sbjct: 5 QLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLDQNVPQYKRDFRRKVIY 61
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1;
2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Length = 374
Score = 333 bits (855), Expect = e-105
Identities = 159/214 (74%), Positives = 184/214 (85%)
Query: 694 FRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEEGL 753
FRWKL+ FRYLC N LPSH+KI V+RQTLFEDS+ Q+M L Y+LRRRLY+IFRGEEGL
Sbjct: 4 FRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGL 63
Query: 754 DYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAM 813
DYGG++REWFFLLSHEVLNPMYCLFEYA KNNY LQINPAS +NPDHL YF FIGRFIAM
Sbjct: 64 DYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAM 123
Query: 814 ALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSV 873
AL+HG+FI +GF++PFYKRML+KKL +KD+ESID EFYNSL+WIRDNNI+ECGLE+Y SV
Sbjct: 124 ALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSV 183
Query: 874 DFEILGQVIHHELKENGDKIRVCEENKEEYMRWY 907
D EILG+V H+LK G I V EENK+EY+
Sbjct: 184 DMEILGKVTSHDLKLGGSNILVTEENKDEYIGLM 217
Score = 125 bits (315), Expect = 6e-31
Identities = 55/72 (76%), Positives = 67/72 (93%)
Query: 50 YPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRN 109
Y LMTEWR +RG++EQTKAFLDGFNEVVP++WL+YFDE+ELE++LCGMQE+D+ DWQRN
Sbjct: 213 YIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRN 272
Query: 110 AIYRHYTRNSKQ 121
+YRHYTRNSKQ
Sbjct: 273 TVYRHYTRNSKQ 284
Score = 98.4 bits (246), Expect = 4e-22
Identities = 43/65 (66%), Positives = 48/65 (73%), Gaps = 8/65 (12%)
Query: 925 FSSLPGHAVFPWEDLPNSWRFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYA 984
F+ L G +FCIEKVGKDTWLPRSHTCFNRLDLPPYKSY+Q+ EKL +A
Sbjct: 318 FAELMGSNGPQ--------KFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFA 369
Query: 985 IEETE 989
IEETE
Sbjct: 370 IEETE 374
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic
mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Length = 380
Score = 327 bits (840), Expect = e-103
Identities = 110/218 (50%), Positives = 150/218 (68%), Gaps = 2/218 (0%)
Query: 691 ERSFRWKLSQFRY-LCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRG 749
+R KL R L H +I V+R+ +FE+SY QVM++ +L +RL I FRG
Sbjct: 1 KRDLVQKLKILRQELSQQQPQAGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRG 60
Query: 750 EEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGR 809
EEGLDYGGV+REW +LLSHE+LNP Y LF+Y+ + Y+LQINP S VNP+HL YF F+GR
Sbjct: 61 EEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGR 120
Query: 810 FIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLEL 869
+ MA++HG +I GFT+PFYK++L K + + D+E +DP+ +NSLVWI +N+I L+
Sbjct: 121 IMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDLHNSLVWILENDITGV-LDH 179
Query: 870 YLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWY 907
V+ G++I HELK NG I V EENK+EY+R Y
Sbjct: 180 TFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLY 217
Score = 124 bits (314), Expect = 8e-31
Identities = 38/72 (52%), Positives = 46/72 (63%)
Query: 50 YPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRN 109
Y RL WR RGIE Q A GFNEV+P LK FDE+ELELI+CG+ +IDV DW+ N
Sbjct: 213 YVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVN 272
Query: 110 AIYRHYTRNSKQ 121
+H T +S
Sbjct: 273 TRLKHCTPDSNI 284
Score = 104 bits (262), Expect = 4e-24
Identities = 28/52 (53%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 944 RFCIEKVGKDT-WLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFGQE 994
F I ++ T LP++HTCFNR+D+PPY+SY+++ EKL AIEET GF E
Sbjct: 329 LFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCGFAVE 380
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE,
alternative splicing, chromosomal rearrangement,
cytoplasm, differentiation; 1.89A {Homo sapiens} PDB:
3g1n_A
Length = 405
Score = 326 bits (837), Expect = e-102
Identities = 85/216 (39%), Positives = 125/216 (57%), Gaps = 4/216 (1%)
Query: 692 RSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYELRRRLYIIFRGEE 751
+ FR +L + + + V R +FEDSY ++ R E++ RLYI+F GEE
Sbjct: 30 KYFRQELERLDEGLR----KEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEE 85
Query: 752 GLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFI 811
G D GG+ REW+ ++S E+ NPMY LF + + + INP+S+ NP+HL YFKF+GR +
Sbjct: 86 GQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHANPNHLSYFKFVGRIV 145
Query: 812 AMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYL 871
A A+Y R + FT FYK +L K + D+ES D FY LV++ +N++ G +L
Sbjct: 146 AKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTF 205
Query: 872 SVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWY 907
S + + G +LK NG I V EENK+EY+
Sbjct: 206 STEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLV 241
Score = 125 bits (317), Expect = 5e-31
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 50 YPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRN 109
Y L+ + RMT I +Q AFL+GF E++P + F E+ELEL++ G+ ID++D + N
Sbjct: 237 YVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSN 296
Query: 110 AIYRHYTRNSKQ 121
Y Y NS Q
Sbjct: 297 TEYHKYQSNSIQ 308
Score = 96.1 bits (240), Expect = 4e-21
Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 944 RFCIEKVGKDT-WLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEE-TEGFG 992
+F I + + T LP +HTCFN+LDLP Y+S++++ L AI+E +EGFG
Sbjct: 353 KFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQEASEGFG 403
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta
protein (A + B), E3 ligase, HECT domain, UBL-
conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB:
3jvz_C 3jw0_C 2xbf_A 2xbb_A
Length = 392
Score = 323 bits (829), Expect = e-101
Identities = 102/230 (44%), Positives = 141/230 (61%), Gaps = 5/230 (2%)
Query: 681 KGAYGVPKAYERSFRWKLSQFRY-LCHHNVLPSHIKITVARQTLFEDSYHQVMRLPAYE- 738
G + R F+ K FR L +P+ ++ + R +FE+SY ++M + +
Sbjct: 9 SGRENLYFQGSREFKQKYDYFRKKLKKPADIPNRFEMKLHRNNIFEESYRRIMSVKRPDV 68
Query: 739 LRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASY-VN 797
L+ RL+I F E+GLDYGGV+REWFFLLS E+ NP Y LFEY+ +NY+LQINP S N
Sbjct: 69 LKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCN 128
Query: 798 PDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDPEFYNSLVWI 857
DHL YF FIGR +A++HG+ + F PFYK ML K++ + D+ES+D E+YNSL WI
Sbjct: 129 EDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWI 188
Query: 858 RDNNIDECGLELYLSVDFEILGQVIHHELKENGDKIRVCEENKEEYMRWY 907
+N+ E L+L +D E GQ +LK NG +I V ENK EY+
Sbjct: 189 LENDPTE--LDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLV 236
Score = 121 bits (305), Expect = 1e-29
Identities = 31/73 (42%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 50 YPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRN 109
Y L+ +WR +++Q AFL+GF E++PI+ +K FDE ELEL++CG+ ++DV DW+++
Sbjct: 232 YIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQH 291
Query: 110 AIYRH-YTRNSKQ 121
+IY++ Y N
Sbjct: 292 SIYKNGYCPNHPV 304
Score = 89.6 bits (223), Expect = 4e-19
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 944 RFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIE 986
F IE+ G LPR+HTCFNRLDLPPY++++ + EKL A+E
Sbjct: 349 LFTIEQWGSPEKLPRAHTCFNRLDLPPYETFEDLREKLLMAVE 391
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated
shape, E3 ubiquitin ligase, E2 ubiquitin conjugating
enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Length = 358
Score = 268 bits (687), Expect = 1e-81
Identities = 56/204 (27%), Positives = 111/204 (54%), Gaps = 11/204 (5%)
Query: 710 LPSHIKITVARQTLFEDSYHQ---VMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLL 766
L ++++ V R + +D+ + + +L+++LY+ F GE+G+D GGVS+E+F L+
Sbjct: 2 LNPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLV 61
Query: 767 SHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFT 826
E+ NP +F Y +++ NP+S + F IG + +A+Y+ + F
Sbjct: 62 VEEIFNPDIGMFTY-DESTKLFWFNPSS---FETEGQFTLIGIVLGLAIYNNCILDVHFP 117
Query: 827 MPFYKRMLNKKLVMKDIESIDPEFYNSLVWIR--DNNIDECGLELYLSVDF-EILGQVIH 883
M Y++++ KK +D+ P Y SL + + N+++ + + + ++ G +
Sbjct: 118 MVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDD-MMITFQISQTDLFGNPMM 176
Query: 884 HELKENGDKIRVCEENKEEYMRWY 907
++LKENGDKI + EN++E++ Y
Sbjct: 177 YDLKENGDKIPITNENRKEFVNLY 200
Score = 111 bits (280), Expect = 1e-26
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 50 YPRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKY-FDERELELILCGMQEIDVEDWQR 108
+ L +++ + + +E+Q KAF GF+ V LKY F E+EL++CG + +D + +
Sbjct: 196 FVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEE 255
Query: 109 NAIYR-HYTRNSKQ 121
Y YTR+S
Sbjct: 256 TTEYDGGYTRDSVL 269
Score = 100 bits (252), Expect = 6e-23
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 944 RFCIEKVGKDT-WLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFG 992
+ I K G DT LP SHTCFN L LP Y S +++ E+L AI +GFG
Sbjct: 307 KMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFG 356
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular
binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A*
2laz_A*
Length = 90
Score = 123 bits (310), Expect = 1e-33
Identities = 36/83 (43%), Positives = 46/83 (55%)
Query: 591 DDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIR 650
+ LP G+E+R G+VYF++ + + W DPR + PLPPGWEIR
Sbjct: 4 GGSPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIR 63
Query: 651 YTEDGTRYFVDHNTRSTTFEDPR 673
T G YFVDHN R+T F DPR
Sbjct: 64 NTATGRVYFVDHNNRTTQFTDPR 86
Score = 110 bits (276), Expect = 5e-29
Identities = 33/90 (36%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 366 PALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP--------------QPLPPGWE 411
P LP G+E R G+ Y++ T S+W P PLPPGWE
Sbjct: 2 PLGGSPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWE 61
Query: 412 LRRDPRGRVYYVDHNTRSTTWQRPNSERLQ 441
+R GRVY+VDHN R+T + P RL
Sbjct: 62 IRNTATGRVYFVDHNNRTTQFTDP---RLS 88
Score = 104 bits (261), Expect = 4e-27
Identities = 36/123 (29%), Positives = 45/123 (36%), Gaps = 40/123 (32%)
Query: 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFL 567
P LP G+E R +G+VY++ T +TW P R+
Sbjct: 7 PPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDP---RVPRDLSNINCEEL---------- 53
Query: 568 YPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPR 627
G LP GWE R GRVYFV+H NRTTQ+ DPR
Sbjct: 54 ---------------------------GPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPR 86
Query: 628 TQG 630
Sbjct: 87 LSA 89
Score = 87.6 bits (217), Expect = 4e-21
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 17/77 (22%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERP--------------QPLPPGWELRRDPRGRVYYVD 529
E+ G+ Y++ T S+W P PLPPGWE+R GRVY+VD
Sbjct: 15 EQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNTATGRVYFVD 74
Query: 530 HNTRSTTWQRPNSERLQ 546
HN R+T + P RL
Sbjct: 75 HNNRTTQFTDP---RLS 88
Score = 63.3 bits (154), Expect = 1e-12
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 634 GQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQ 680
G +G P LP G+E R T+ G YF+ T +T+ DPR
Sbjct: 1 GPLGGSPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSN 47
Score = 58.3 bits (141), Expect = 8e-11
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 354 TSPRAAQSNGLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
PR + PLPPGWEIR GR Y+VDHN R++ + P
Sbjct: 37 HDPRV-PRDLSNINCEELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDP 85
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila
melanogaster} SCOP: b.72.1.1 b.72.1.1
Length = 88
Score = 122 bits (308), Expect = 2e-33
Identities = 63/86 (73%), Positives = 69/86 (80%), Gaps = 2/86 (2%)
Query: 589 EEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWE 648
DALG LP GWE+++Q D RVYFVNHKNRTTQWEDPRTQGQE+ +E PLPPGWE
Sbjct: 5 FHMDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSL--INEGPLPPGWE 62
Query: 649 IRYTEDGTRYFVDHNTRSTTFEDPRP 674
IRYT G R+FVDHNTR TTFEDPRP
Sbjct: 63 IRYTAAGERFFVDHNTRRTTFEDPRP 88
Score = 106 bits (267), Expect = 7e-28
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 12/83 (14%)
Query: 365 PPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP------------QPLPPGWEL 412
+ PLP GWE + + R Y+V+H R++ WE P PLPPGWE+
Sbjct: 4 EFHMDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEI 63
Query: 413 RRDPRGRVYYVDHNTRSTTWQRP 435
R G ++VDHNTR TT++ P
Sbjct: 64 RYTAAGERFFVDHNTRRTTFEDP 86
Score = 100 bits (250), Expect = 2e-25
Identities = 32/126 (25%), Positives = 44/126 (34%), Gaps = 42/126 (33%)
Query: 502 SSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQ 561
+ PLP GWE + RVY+V+H R+T W+ P ++ +
Sbjct: 4 EFHMDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEV-------------- 49
Query: 562 GSQRFLYPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTT 621
G LP GWE R G +FV+H R T
Sbjct: 50 ----------------------------SLINEGPLPPGWEIRYTAAGERFFVDHNTRRT 81
Query: 622 QWEDPR 627
+EDPR
Sbjct: 82 TFEDPR 87
Score = 86.5 bits (214), Expect = 1e-20
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 12/69 (17%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERP------------QPLPPGWELRRDPRGRVYYVDHN 531
E+ + R Y+V+H R++ WE P PLPPGWE+R G ++VDHN
Sbjct: 18 EKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHN 77
Query: 532 TRSTTWQRP 540
TR TT++ P
Sbjct: 78 TRRTTFEDP 86
Score = 82.6 bits (204), Expect = 3e-19
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 29/114 (25%)
Query: 397 SSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQ 456
+ PLP GWE + RVY+V+H R+T W+ P ++ + +G
Sbjct: 4 EFHMDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGP------- 56
Query: 457 GSQRFLYPQHGVGVSSSSAVSFSTGVTEEDADTYGRRYYVDHNTRSSSWERPQP 510
G E G R++VDHNTR +++E P+P
Sbjct: 57 -------LPPGW---------------EIRYTAAGERFFVDHNTRRTTFEDPRP 88
Score = 61.0 bits (148), Expect = 1e-11
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 352 GTTSPRAAQSNGLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQP 405
TT ++ G +L E PLPPGWEIR G R++VDHNTR +++E P+P
Sbjct: 35 RTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRP 88
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 95.7 bits (238), Expect = 7e-23
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 149 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIG 208
P+PY+E+ VD K T NT PKW + TV+V+P S + FR+ H+T + D +G
Sbjct: 56 GPSPYVEVTVD-GQSKKTEKCNNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVLLG 114
Query: 209 EKRLNIYGVLAHYNGKCEHLEITLDLMNDSR 239
L+IY L N K E + +TL L D
Sbjct: 115 TAALDIYETLKSNNMKLEEVVVTLQLGGDKE 145
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein
binding; NMR {Homo sapiens}
Length = 92
Score = 87.8 bits (217), Expect = 4e-21
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 9/82 (10%)
Query: 363 GLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPL---------PPGWELR 413
G A W + GR YY + T+ S+WE+P L W+
Sbjct: 1 GSDVAAGTASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEY 60
Query: 414 RDPRGRVYYVDHNTRSTTWQRP 435
+ G+ YY + T+ + W +P
Sbjct: 61 KSDSGKTYYYNSQTKESRWAKP 82
Score = 78.2 bits (192), Expect = 9e-18
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 590 EDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEI 649
S W PDGR Y+ N + + + WE P ++ W+
Sbjct: 5 AAGTASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPA-----EQLLSKCPWKE 59
Query: 650 RYTEDGTRYFVDHNTRSTTFEDPR 673
++ G Y+ + T+ + + P+
Sbjct: 60 YKSDSGKTYYYNSQTKESRWAKPK 83
Score = 72.0 bits (176), Expect = 1e-15
Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 45/120 (37%)
Query: 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFL 567
W + P GR YY + T+ +TW++P+ + +
Sbjct: 9 ASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQL----------------- 51
Query: 568 YPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPR 627
W+ G+ Y+ N + + ++W P+
Sbjct: 52 ----------------------------LSKCPWKEYKSDSGKTYYYNSQTKESRWAKPK 83
Score = 71.6 bits (175), Expect = 2e-15
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPL---------PPGWELRRDPRGRVYYVDHNTRS 534
E GR YY + T+ S+WE+P L W+ + G+ YY + T+
Sbjct: 17 TEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKTYYYNSQTKE 76
Query: 535 TTWQRP 540
+ W +P
Sbjct: 77 SRWAKP 82
Score = 67.4 bits (164), Expect = 6e-14
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 32/109 (29%)
Query: 403 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFL 462
W + P GR YY + T+ +TW++P+ + +
Sbjct: 9 ASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQL----------------- 51
Query: 463 YPQHGVGVSSSSAVSFSTGVTEEDADTYGRRYYVDHNTRSSSWERPQPL 511
S +E G+ YY + T+ S W +P+ L
Sbjct: 52 ---------------LSKCPWKEYKSDSGKTYYYNSQTKESRWAKPKEL 85
Score = 43.9 bits (103), Expect = 1e-05
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 637 GADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRP 674
W + DG Y+ + T+ +T+E P
Sbjct: 6 AGTASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDD 43
Score = 41.6 bits (97), Expect = 6e-05
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 369 PPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPL 406
+ W+ + G+ YY + T+ S W +P+ L
Sbjct: 48 AEQLLSKCPWKEYKSDSGKTYYYNSQTKESRWAKPKEL 85
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear
protein, mRNA splicing, ribonucleoprotein; NMR
{Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Length = 75
Score = 86.1 bits (213), Expect = 9e-21
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 599 SGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRY 658
S W+ GR+Y+ N + + WE P+ + + GW+ T DG Y
Sbjct: 2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQ-----EELLLRENGWKAAKTADGKVY 56
Query: 659 FVDHNTRSTTFEDPR 673
+ + TR T++ P
Sbjct: 57 YYNPTTRETSWTIPA 71
Score = 84.9 bits (210), Expect = 3e-20
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 377 GWEIRQDTYGRRYYVDHNTRSSSWERPQ---------PLPPGWELRRDPRGRVYYVDHNT 427
W+ +D GR YY + T+ S+WE+P+ GW+ + G+VYY + T
Sbjct: 3 IWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTT 62
Query: 428 RSTTWQRPNSER 439
R T+W P E+
Sbjct: 63 RETSWTIPAFEK 74
Score = 79.9 bits (197), Expect = 1e-18
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQ---------PLPPGWELRRDPRGRVYYVDHNTRS 534
+E D GR YY + T+ S+WE+P+ GW+ + G+VYY + TR
Sbjct: 5 KEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRE 64
Query: 535 TTWQRPNSER 544
T+W P E+
Sbjct: 65 TSWTIPAFEK 74
Score = 74.9 bits (184), Expect = 8e-17
Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 45/116 (38%)
Query: 514 GWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGV 573
W+ +D GR+YY + T+ +TW++P Q
Sbjct: 3 IWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELL----------------------- 39
Query: 574 GVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
+GW+ DG+VY+ N R T W P +
Sbjct: 40 ----------------------LRENGWKAAKTADGKVYYYNPTTRETSWTIPAFE 73
Score = 49.1 bits (117), Expect = 9e-08
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 369 PPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
GW+ + G+ YY + TR +SW P
Sbjct: 36 EELLLRENGWKAAKTADGKVYYYNPTTRETSWTIP 70
Score = 41.4 bits (97), Expect = 6e-05
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 646 GWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQKGA 683
W+ G Y+ + T+ +T+E P+ + +++
Sbjct: 3 IWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLL 40
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold,
ubiquitin ligase; 1.97A {Homo sapiens}
Length = 118
Score = 86.6 bits (215), Expect = 3e-20
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 945 FCIEKVGKDTWLPRSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEGFG 992
+ D LP ++TC +RL +P Y S + +KL AI+ + FG
Sbjct: 70 SITIRPPDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKT-KNFG 116
Score = 33.8 bits (78), Expect = 0.068
Identities = 2/29 (6%), Positives = 9/29 (31%), Gaps = 1/29 (3%)
Query: 100 EIDVEDWQRNAIYRH-YTRNSKQTTRVVK 127
V+ + N+++ + +
Sbjct: 3 LGSVQMLISFTSFNDESGENAEKLLQFKR 31
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; MAGI1, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Length = 57
Score = 80.9 bits (200), Expect = 3e-19
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 584 STGVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEI 633
S+G + +D LG LP WE +G VYF++H +TT W DPR ++
Sbjct: 2 SSGSSGAEDNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNKQQ 51
Score = 73.2 bits (180), Expect = 2e-16
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQKGAYG 685
+ PLP WE+ YTE+G YF+DHNT++T++ DPR + + G
Sbjct: 11 NLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNKQQSGPSSG 57
Score = 68.6 bits (168), Expect = 9e-15
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 442
PLP WE+ G VY++DHNT++T+W P R +
Sbjct: 14 PLPENWEMAYTENGEVYFIDHNTKTTSWLDP---RCLN 48
Score = 68.6 bits (168), Expect = 9e-15
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 547
PLP WE+ G VY++DHNT++T+W P R +
Sbjct: 14 PLPENWEMAYTENGEVYFIDHNTKTTSWLDP---RCLN 48
Score = 68.2 bits (167), Expect = 1e-14
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 361 SNGLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPP 408
S+G A PLP WE+ G Y++DHNT+++SW P+ L
Sbjct: 2 SSGSSGAEDNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNK 49
Score = 43.9 bits (104), Expect = 4e-06
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPLPP 513
E G Y++DHNT+++SW P+ L
Sbjct: 20 EMAYTENGEVYFIDHNTKTTSWLDPRCLNK 49
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain,
solution, complex, ligase/signaling protein complex; NMR
{Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Length = 53
Score = 80.1 bits (198), Expect = 6e-19
Identities = 32/52 (61%), Positives = 35/52 (67%)
Query: 626 PRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVP 677
P + +E PLPPGWEIRYT G R+FVDHNTR TTFEDPRPG P
Sbjct: 2 PLGSPEFHMVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPGAP 53
Score = 70.9 bits (174), Expect = 1e-15
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 358 AAQSNGLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPP 408
+L E PLPPGWEIR G R++VDHNTR +++E P+P P
Sbjct: 3 LGSPEFHMVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPGAP 53
Score = 68.9 bits (169), Expect = 6e-15
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 594 LGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
G LP GWE R G +FV+H R T +EDPR
Sbjct: 16 EGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPG 51
Score = 68.2 bits (167), Expect = 9e-15
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
PLPPGWE+R G ++VDHNTR TT++ P
Sbjct: 18 PLPPGWEIRYTAAGERFFVDHNTRRTTFEDP 48
Score = 68.2 bits (167), Expect = 9e-15
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
PLPPGWE+R G ++VDHNTR TT++ P
Sbjct: 18 PLPPGWEIRYTAAGERFFVDHNTRRTTFEDP 48
Score = 47.8 bits (114), Expect = 2e-07
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPLPP 513
E G R++VDHNTR +++E P+P P
Sbjct: 24 EIRYTAAGERFFVDHNTRRTTFEDPRPGAP 53
>1ymz_A CC45; artificial protein, computational design, unknown function;
NMR {Synthetic} SCOP: k.22.1.1
Length = 43
Score = 80.0 bits (198), Expect = 6e-19
Identities = 21/37 (56%), Positives = 25/37 (67%)
Query: 399 SWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
S R PLPPGWE R D G+VYY + T +TTW+RP
Sbjct: 2 SHGRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERP 38
Score = 80.0 bits (198), Expect = 6e-19
Identities = 21/37 (56%), Positives = 25/37 (67%)
Query: 504 SWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
S R PLPPGWE R D G+VYY + T +TTW+RP
Sbjct: 2 SHGRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERP 38
Score = 68.8 bits (169), Expect = 6e-15
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 591 DDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQ 631
LP GWERR +G+VY+ N + TT WE P +
Sbjct: 3 HGRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTIILE 43
Score = 67.2 bits (165), Expect = 2e-14
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPL 406
PLPPGWE R D G+ YY + T +++WERP +
Sbjct: 5 RSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTII 41
Score = 66.1 bits (162), Expect = 5e-14
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 638 ADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
PLPPGWE R +G Y+ + T +TT+E P
Sbjct: 4 GRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPT 39
Score = 45.7 bits (109), Expect = 6e-07
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPL 511
E D G+ YY + T +++WERP +
Sbjct: 14 ERRTDVEGKVYYFNVRTLTTTWERPTII 41
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif,
liddle syndrome, proline-rich, ligase; NMR {Rattus
norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Length = 50
Score = 78.8 bits (195), Expect = 2e-18
Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 590 EDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEI 633
+ + LG LP GWE R DGRV+F+NH + TQWEDPR Q I
Sbjct: 5 DSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQNVAI 48
Score = 72.3 bits (178), Expect = 4e-16
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
D PLPPGWE R DG +F++HN + T +EDPR
Sbjct: 8 DLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPR 42
Score = 70.0 bits (172), Expect = 2e-15
Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 442
PLPPGWE R GRV++++HN + T W+ P R+Q+
Sbjct: 11 PLPPGWEERTHTDGRVFFINHNIKKTQWEDP---RMQN 45
Score = 70.0 bits (172), Expect = 2e-15
Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 547
PLPPGWE R GRV++++HN + T W+ P R+Q+
Sbjct: 11 PLPPGWEERTHTDGRVFFINHNIKKTQWEDP---RMQN 45
Score = 67.3 bits (165), Expect = 2e-14
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 363 GLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
G P PLPPGWE R T GR ++++HN + + WE P
Sbjct: 1 GSPVDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDP 41
Score = 43.4 bits (103), Expect = 5e-06
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
EE T GR ++++HN + + WE P
Sbjct: 17 EERTHTDGRVFFINHNIKKTQWEDP 41
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo
sapiens}
Length = 49
Score = 78.2 bits (193), Expect = 3e-18
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 394 NTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
++ SS + LP GWE DP +YYVDH R T ++ P
Sbjct: 2 SSGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENP 43
Score = 78.2 bits (193), Expect = 3e-18
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 499 NTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
++ SS + LP GWE DP +YYVDH R T ++ P
Sbjct: 2 SSGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENP 43
Score = 72.8 bits (179), Expect = 2e-16
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 584 STGVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQ 631
S+G + D LP+GWE+ P +Y+V+H NR TQ+E+P
Sbjct: 2 SSGSSGLDS-ELELPAGWEKIEDPVYGIYYVDHINRKTQYENPSGPSS 48
Score = 63.6 bits (155), Expect = 4e-13
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 362 NGLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
+ L E LP GWE +D YYVDH R + +E P
Sbjct: 2 SSGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENP 43
Score = 61.3 bits (149), Expect = 2e-12
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
E LP GWE Y+VDH R T +E+P
Sbjct: 10 SELELPAGWEKIEDPVYGIYYVDHINRKTQYENPS 44
Score = 40.5 bits (95), Expect = 6e-05
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
E+ D YYVDH R + +E P
Sbjct: 19 EKIEDPVYGIYYVDHINRKTQYENP 43
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription;
NMR {Oryzias latipes}
Length = 46
Score = 77.3 bits (191), Expect = 6e-18
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 586 GVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQ 631
G A G LP GWE+ + P+G +Y++NHKN+TT W DPR + +
Sbjct: 1 GSPNSSPASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRLETR 46
Score = 69.2 bits (170), Expect = 4e-15
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
PLP GWE T +G Y+++H ++T++ DPR
Sbjct: 8 ASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPR 42
Score = 68.1 bits (167), Expect = 8e-15
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQ 441
PLP GWE P G +YY++H ++T+W P RL+
Sbjct: 11 PLPEGWEQAITPEGEIYYINHKNKTTSWLDP---RLE 44
Score = 68.1 bits (167), Expect = 8e-15
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQ 546
PLP GWE P G +YY++H ++T+W P RL+
Sbjct: 11 PLPEGWEQAITPEGEIYYINHKNKTTSWLDP---RLE 44
Score = 68.1 bits (167), Expect = 1e-14
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 363 GLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
G P + P PLP GWE G YY++H +++SW P
Sbjct: 1 GSPNSSPASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDP 41
Score = 43.0 bits (102), Expect = 6e-06
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
E+ G YY++H +++SW P
Sbjct: 17 EQAITPEGEIYYINHKNKTTSWLDP 41
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 40
Score = 75.7 bits (187), Expect = 2e-17
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 638 ADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPG 675
+ LP GWE+R+T DG YFVDHN R+TT+ DPR G
Sbjct: 3 SGSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRTG 40
Score = 70.3 bits (173), Expect = 1e-15
Identities = 19/37 (51%), Positives = 21/37 (56%)
Query: 592 DALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRT 628
LP GWE R DG YFV+H RTT + DPRT
Sbjct: 3 SGSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRT 39
Score = 67.6 bits (166), Expect = 1e-14
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 404 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
LP GWE+R G Y+VDHN R+TT+ P
Sbjct: 6 SGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDP 37
Score = 67.6 bits (166), Expect = 1e-14
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
LP GWE+R G Y+VDHN R+TT+ P
Sbjct: 6 SGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDP 37
Score = 65.7 bits (161), Expect = 5e-14
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 367 ALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQP 405
LP GWE+R G Y+VDHN R++++ P+
Sbjct: 1 GSSGSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRT 39
Score = 43.7 bits (104), Expect = 3e-06
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQP 510
E G Y+VDHN R++++ P+
Sbjct: 13 EMRFTVDGIPYFVDHNRRTTTYIDPRT 39
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain,
UBL-conjugation pathway, structural GE structural
genomics consortium, SGC, coiled coil; HET: MSE; 1.80A
{Homo sapiens}
Length = 109
Score = 78.1 bits (192), Expect = 2e-17
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 19/81 (23%)
Query: 598 PSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTR 657
+ER V F+N + D R LP GWEI+ + G
Sbjct: 47 ARNFERYQHNRDLVNFIN------MFADTRL-------------ELPRGWEIKTDQQGKS 87
Query: 658 YFVDHNTRSTTFEDPRPGVPK 678
+FVDHN+R+TTF DPR +
Sbjct: 88 FFVDHNSRATTFIDPRIPLQN 108
Score = 72.7 bits (178), Expect = 1e-15
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 360 QSNGLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGR 419
S L + +E Q +++ + LP GWE++ D +G+
Sbjct: 32 SSTCLKHMILKVRRDARNFERYQHNRDLVNFINMFADTR-----LELPRGWEIKTDQQGK 86
Query: 420 VYYVDHNTRSTTWQRP 435
++VDHN+R+TT+ P
Sbjct: 87 SFFVDHNSRATTFIDP 102
Score = 72.0 bits (176), Expect = 2e-15
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 23/100 (23%)
Query: 532 TRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEED 591
T ST + + + ++++ R+ + + V + A
Sbjct: 31 TSSTCLKHMILKVRRDARNFE------------RYQHNRDLVNFINMFA----------- 67
Query: 592 DALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQ 631
D LP GWE + G+ +FV+H +R T + DPR Q
Sbjct: 68 DTRLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIPLQ 107
Score = 63.1 bits (153), Expect = 3e-12
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
LP GWE++ D +G+ ++VDHN+R+TT+ P
Sbjct: 71 LELPRGWEIKTDQQGKSFFVDHNSRATTFIDP 102
Score = 43.5 bits (102), Expect = 2e-05
Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 31/99 (31%)
Query: 427 TRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVT--- 483
T ST + + + ++++ QH + V+F
Sbjct: 31 TSSTCLKHMILKVRRDARNFE---------------RYQH-----NRDLVNFINMFADTR 70
Query: 484 -------EEDADTYGRRYYVDHNTRSSSWERPQ-PLPPG 514
E D G+ ++VDHN+R++++ P+ PL G
Sbjct: 71 LELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIPLQNG 109
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: k.22.1.1
Length = 49
Score = 75.5 bits (186), Expect = 3e-17
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 638 ADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVP 677
++ PLPPGW + +T G +Y++DHNT +T + P P
Sbjct: 7 GEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLESGP 46
Score = 73.2 bits (180), Expect = 2e-16
Identities = 20/39 (51%), Positives = 23/39 (58%)
Query: 397 SSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
S S PLPPGW + RGR YY+DHNT +T W P
Sbjct: 3 SGSSGEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHP 41
Score = 73.2 bits (180), Expect = 2e-16
Identities = 20/39 (51%), Positives = 23/39 (58%)
Query: 502 SSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
S S PLPPGW + RGR YY+DHNT +T W P
Sbjct: 3 SGSSGEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHP 41
Score = 72.4 bits (178), Expect = 3e-16
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 371 EEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPP 408
+ PLPPGW + GR+YY+DHNT ++ W P P
Sbjct: 9 DLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLESGP 46
Score = 69.7 bits (171), Expect = 3e-15
Identities = 15/49 (30%), Positives = 19/49 (38%)
Query: 586 GVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIG 634
G + LP GW GR Y+++H TT W P G G
Sbjct: 1 GSSGSSGEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLESGPSSG 49
Score = 50.8 bits (122), Expect = 1e-08
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPLPP 513
D GR+YY+DHNT ++ W P P
Sbjct: 17 SVDWTMRGRKYYIDHNTNTTHWSHPLESGP 46
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65
mutant, structural protein; NMR {Homo sapiens} SCOP:
b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Length = 46
Score = 75.0 bits (185), Expect = 3e-17
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPK 678
D+ PLP GWE+ T G RYF +H ++TT++DPR +
Sbjct: 5 DDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLS 44
Score = 74.6 bits (184), Expect = 4e-17
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 400 WERPQ--PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 442
+E P PLP GWE+ + G+ Y+ +H ++TTWQ P L
Sbjct: 1 FEIPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLSQ 45
Score = 74.6 bits (184), Expect = 4e-17
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 505 WERPQ--PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 547
+E P PLP GWE+ + G+ Y+ +H ++TTWQ P L
Sbjct: 1 FEIPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLSQ 45
Score = 67.3 bits (165), Expect = 2e-14
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 590 EDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
E LP+GWE G+ YF NH ++TT W+DPR
Sbjct: 2 EIPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKA 41
Score = 66.5 bits (163), Expect = 3e-14
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 368 LPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
+P + PLP GWE+ + + G+RY+ +H ++++W+ P
Sbjct: 3 IPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDP 38
Score = 43.0 bits (102), Expect = 7e-06
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
E + G+RY+ +H ++++W+ P
Sbjct: 14 EMAKTSSGQRYFKNHIDQTTTWQDP 38
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human
modular domain, complex, HOST interaction, ligase; NMR
{Homo sapiens} PDB: 2kq0_A 2laj_A*
Length = 49
Score = 75.0 bits (185), Expect = 4e-17
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 638 ADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVP 677
++ LP GWE+R+ +G +F+DHNT++TT+EDPR +P
Sbjct: 8 IEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKIP 47
Score = 74.7 bits (184), Expect = 5e-17
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 590 EDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
+ G LP GWE R P+GR +F++H +TT WEDPR +
Sbjct: 6 SEIEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLK 45
Score = 70.0 bits (172), Expect = 2e-15
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 442
LP GWE+R P GR +++DHNT++TTW+ P + H
Sbjct: 12 FLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKIPAH 49
Score = 70.0 bits (172), Expect = 2e-15
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 547
LP GWE+R P GR +++DHNT++TTW+ P + H
Sbjct: 12 FLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKIPAH 49
Score = 68.5 bits (168), Expect = 7e-15
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 364 LPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPP 408
+ P+ + LP GWE+R GR +++DHNT++++WE P+ P
Sbjct: 3 MGPSEIEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKIP 47
Score = 45.4 bits (108), Expect = 1e-06
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPLPP 513
E GR +++DHNT++++WE P+ P
Sbjct: 18 EVRHAPNGRPFFIDHNTKTTTWEDPRLKIP 47
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif,
binding affinity, signalling protein,ligase; NMR
{Drosophila melanogaster}
Length = 46
Score = 74.6 bits (184), Expect = 5e-17
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVP 677
+E PLPP W ++ +G +F+DH +R TT+ DPR G
Sbjct: 7 EEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNGRA 45
Score = 70.4 bits (173), Expect = 1e-15
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 592 DALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
LP W +V P+GR +F++H +R T W DPR
Sbjct: 6 GEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNG 43
Score = 70.0 bits (172), Expect = 2e-15
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 404 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSER 439
+PLPP W ++ P GR +++DH +R TTW P + R
Sbjct: 9 EPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNGR 44
Score = 70.0 bits (172), Expect = 2e-15
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSER 544
+PLPP W ++ P GR +++DH +R TTW P + R
Sbjct: 9 EPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNGR 44
Score = 67.7 bits (166), Expect = 1e-14
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 365 PPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQP 405
P EEPLPP W ++ GR +++DH +R ++W P+
Sbjct: 2 PLGSGEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRN 42
Score = 43.8 bits (104), Expect = 4e-06
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQP 510
GR +++DH +R ++W P+
Sbjct: 16 SMQVAPNGRTFFIDHASRRTTWIDPRN 42
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW
domain; NMR {Homo sapiens}
Length = 39
Score = 74.1 bits (183), Expect = 6e-17
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 593 ALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
A+G LP GWERRV GR+Y+V+H RTT W+ P +
Sbjct: 3 AMGPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTLE 39
Score = 72.2 bits (178), Expect = 3e-16
Identities = 25/37 (67%), Positives = 28/37 (75%), Gaps = 3/37 (8%)
Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQ 441
PLPPGWE R D GR+YYVDH TR+TTWQRP L+
Sbjct: 6 PLPPGWERRVDNMGRIYYVDHFTRTTTWQRP---TLE 39
Score = 72.2 bits (178), Expect = 3e-16
Identities = 25/37 (67%), Positives = 28/37 (75%), Gaps = 3/37 (8%)
Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQ 546
PLPPGWE R D GR+YYVDH TR+TTWQRP L+
Sbjct: 6 PLPPGWERRVDNMGRIYYVDHFTRTTTWQRP---TLE 39
Score = 68.7 bits (169), Expect = 6e-15
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 637 GADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
G PLPPGWE R G Y+VDH TR+TT++ P
Sbjct: 1 GRAMGPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPT 37
Score = 64.8 bits (159), Expect = 1e-13
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 373 PLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
PLPPGWE R D GR YYVDH TR+++W+RP
Sbjct: 6 PLPPGWERRVDNMGRIYYVDHFTRTTTWQRP 36
Score = 45.2 bits (108), Expect = 1e-06
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
E D GR YYVDH TR+++W+RP
Sbjct: 12 ERRVDNMGRIYYVDHFTRTTTWQRP 36
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling
protein-TRAN complex; NMR {Homo sapiens}
Length = 38
Score = 73.4 bits (181), Expect = 1e-16
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 637 GADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
GA E PLP GWE T+DG Y+++H ++T++ DPR
Sbjct: 1 GAMEGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37
Score = 68.7 bits (169), Expect = 4e-15
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 592 DALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPR 627
G LP GWE+ + DG +Y++NHKN+TT W DPR
Sbjct: 2 AMEGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37
Score = 68.0 bits (167), Expect = 8e-15
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
PLP GWE G +YY++H ++T+W P
Sbjct: 6 PLPDGWEQAMTQDGEIYYINHKNKTTSWLDP 36
Score = 68.0 bits (167), Expect = 8e-15
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
PLP GWE G +YY++H ++T+W P
Sbjct: 6 PLPDGWEQAMTQDGEIYYINHKNKTTSWLDP 36
Score = 64.5 bits (158), Expect = 1e-13
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 369 PPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
E PLP GWE G YY++H +++SW P
Sbjct: 2 AMEGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDP 36
Score = 42.9 bits (102), Expect = 6e-06
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
E+ G YY++H +++SW P
Sbjct: 12 EQAMTQDGEIYYINHKNKTTSWLDP 36
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; MAGI-1, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 60
Score = 73.4 bits (180), Expect = 2e-16
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 394 NTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
++ SS + LP GWE DP +YYVDH R T ++ P
Sbjct: 2 SSGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENP 43
Score = 73.4 bits (180), Expect = 2e-16
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 499 NTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
++ SS + LP GWE DP +YYVDH R T ++ P
Sbjct: 2 SSGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENP 43
Score = 69.9 bits (171), Expect = 3e-15
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 584 STGVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIG 637
S+G + D LP+GWE+ P +Y+V+H NR TQ+E+P + + Q+
Sbjct: 2 SSGSSGLDS-ELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLEAKRKKQLE 54
Score = 61.5 bits (149), Expect = 4e-12
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 362 NGLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
+ L E LP GWE +D YYVDH R + +E P
Sbjct: 2 SSGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENP 43
Score = 59.9 bits (145), Expect = 1e-11
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQ 680
E LP GWE Y+VDH R T +E+P + +
Sbjct: 10 SELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLEAKRKK 51
Score = 37.2 bits (86), Expect = 0.001
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
E+ D YYVDH R + +E P
Sbjct: 19 EKIEDPVYGIYYVDHINRKTQYENP 43
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three
stranded antiparallel beta sheet, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 72.6 bits (179), Expect = 2e-16
Identities = 21/38 (55%), Positives = 23/38 (60%)
Query: 401 ERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 438
LPPGWE R D GRVYYVDH + TTW RP+
Sbjct: 3 SGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGP 40
Score = 72.6 bits (179), Expect = 2e-16
Identities = 21/38 (55%), Positives = 23/38 (60%)
Query: 506 ERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
LPPGWE R D GRVYYVDH + TTW RP+
Sbjct: 3 SGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGP 40
Score = 71.9 bits (177), Expect = 4e-16
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 367 ALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPG 409
LPPGWE R D +GR YYVDH + ++W+RP G
Sbjct: 1 GSSGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGPSSG 43
Score = 68.0 bits (167), Expect = 8e-15
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 638 ADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRP 674
+ LPPGWE R + G Y+VDH + TT++ P
Sbjct: 3 SGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSG 39
Score = 68.0 bits (167), Expect = 9e-15
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 592 DALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPR 627
LP GWE+RV GRVY+V+H + T W+ P
Sbjct: 3 SGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPS 38
Score = 50.3 bits (121), Expect = 2e-08
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPLPPG 514
E+ D +GR YYVDH + ++W+RP G
Sbjct: 13 EQRVDQHGRVYYVDHVEKRTTWDRPSGPSSG 43
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Length = 36
Score = 72.1 bits (178), Expect = 3e-16
Identities = 21/32 (65%), Positives = 24/32 (75%)
Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 436
PLPPGWE + D GR YYV+HN RST W RP+
Sbjct: 4 PLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35
Score = 72.1 bits (178), Expect = 3e-16
Identities = 21/32 (65%), Positives = 24/32 (75%)
Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 541
PLPPGWE + D GR YYV+HN RST W RP+
Sbjct: 4 PLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35
Score = 70.2 bits (173), Expect = 1e-15
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 640 EPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
PPLPPGWE + G Y+V+HN RST + P
Sbjct: 2 SPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35
Score = 68.3 bits (168), Expect = 7e-15
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 593 ALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPR 627
LP GWE +V GR Y+VNH NR+TQW P
Sbjct: 1 GSPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35
Score = 67.5 bits (166), Expect = 1e-14
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 371 EEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
PLPPGWE + D GR YYV+HN RS+ W RP
Sbjct: 2 SPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRP 34
Score = 45.9 bits (110), Expect = 5e-07
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
EE D GR YYV+HN RS+ W RP
Sbjct: 10 EEKVDNLGRTYYVNHNNRSTQWHRP 34
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Length = 41
Score = 72.2 bits (178), Expect = 3e-16
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 638 ADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
+ LPPGWE+R +G +F+DHNT++TT+EDPR
Sbjct: 4 GIQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPR 39
Score = 71.4 bits (176), Expect = 6e-16
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 595 GSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
LP GWE R+ P+GR +F++H +TT WEDPR +
Sbjct: 7 SFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRLK 41
Score = 71.4 bits (176), Expect = 6e-16
Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 399 SWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQ 441
S LPPGWE+R P GR +++DHNT++TTW+ P RL+
Sbjct: 2 SPGIQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDP---RLK 41
Score = 71.4 bits (176), Expect = 6e-16
Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 504 SWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQ 546
S LPPGWE+R P GR +++DHNT++TTW+ P RL+
Sbjct: 2 SPGIQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDP---RLK 41
Score = 65.7 bits (161), Expect = 7e-14
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404
+ LPPGWE+R GR +++DHNT++++WE P+
Sbjct: 5 IQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPR 39
Score = 43.7 bits (104), Expect = 3e-06
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQ 509
E GR +++DHNT++++WE P+
Sbjct: 14 EMRIAPNGRPFFIDHNTKTTTWEDPR 39
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 40
Score = 72.0 bits (177), Expect = 3e-16
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 404 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS 437
LPPGW+ P+GR YYV+ T TTW+RP+S
Sbjct: 6 SGLPPGWQSYLSPQGRRYYVNTTTNETTWERPSS 39
Score = 72.0 bits (177), Expect = 3e-16
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS 542
LPPGW+ P+GR YYV+ T TTW+RP+S
Sbjct: 6 SGLPPGWQSYLSPQGRRYYVNTTTNETTWERPSS 39
Score = 63.9 bits (156), Expect = 3e-13
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 371 EEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404
LPPGW+ GRRYYV+ T ++WERP
Sbjct: 5 SSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPS 38
Score = 63.9 bits (156), Expect = 3e-13
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 595 GSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRT 628
LP GW+ + P GR Y+VN T WE P +
Sbjct: 6 SGLPPGWQSYLSPQGRRYYVNTTTNETTWERPSS 39
Score = 59.3 bits (144), Expect = 1e-11
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 638 ADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
+ LPPGW+ + G RY+V+ T TT+E P
Sbjct: 3 SGSSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPS 38
Score = 44.2 bits (105), Expect = 2e-06
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQ 509
+ GRRYYV+ T ++WERP
Sbjct: 13 QSYLSPQGRRYYVNTTTNETTWERPS 38
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB:
2lb2_A*
Length = 36
Score = 71.4 bits (176), Expect = 6e-16
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
LP GWE R+D +GR YYV+HN R+TTW RP
Sbjct: 4 GLPSGWEERKDAKGRTYYVNHNNRTTTWTRP 34
Score = 71.4 bits (176), Expect = 6e-16
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
LP GWE R+D +GR YYV+HN R+TTW RP
Sbjct: 4 GLPSGWEERKDAKGRTYYVNHNNRTTTWTRP 34
Score = 67.6 bits (166), Expect = 1e-14
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 640 EPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
P LP GWE R G Y+V+HN R+TT+ P
Sbjct: 2 SPGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35
Score = 67.6 bits (166), Expect = 1e-14
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 371 EEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
LP GWE R+D GR YYV+HN R+++W RP
Sbjct: 2 SPGLPSGWEERKDAKGRTYYVNHNNRTTTWTRP 34
Score = 67.2 bits (165), Expect = 2e-14
Identities = 19/35 (54%), Positives = 20/35 (57%)
Query: 593 ALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPR 627
LPSGWE R GR Y+VNH NRTT W P
Sbjct: 1 GSPGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35
Score = 46.8 bits (112), Expect = 2e-07
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
EE D GR YYV+HN R+++W RP
Sbjct: 10 EERKDAKGRTYYVNHNNRTTTWTRP 34
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {}
SCOP: k.22.1.1
Length = 37
Score = 70.3 bits (173), Expect = 1e-15
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 595 GSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
LP GW+ +G+ Y+ NH +T+ W DPR
Sbjct: 2 MGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRMS 36
Score = 69.1 bits (170), Expect = 3e-15
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 404 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQ 441
LPPGW+ + G+ YY +HNT+++TW P R+
Sbjct: 2 MGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDP---RMS 36
Score = 69.1 bits (170), Expect = 3e-15
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQ 546
LPPGW+ + G+ YY +HNT+++TW P R+
Sbjct: 2 MGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDP---RMS 36
Score = 67.2 bits (165), Expect = 2e-14
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 642 PLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
LPPGW+ T +G Y+ +HNT+++T+ DPR
Sbjct: 3 GLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPR 34
Score = 62.2 bits (152), Expect = 9e-13
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 372 EPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404
LPPGW+ + G+ YY +HNT++S+W P+
Sbjct: 2 MGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPR 34
Score = 44.5 bits (106), Expect = 2e-06
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQ 509
+E G+ YY +HNT++S+W P+
Sbjct: 9 DEYKTHNGKTYYYNHNTKTSTWTDPR 34
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline
type II helix, PPII, ligase/signaling protein complex;
NMR {Homo sapiens} PDB: 2lb1_A
Length = 42
Score = 69.6 bits (171), Expect = 3e-15
Identities = 23/35 (65%), Positives = 24/35 (68%)
Query: 639 DEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
PLPPGWEIR T G YFVDHN R+T F DPR
Sbjct: 4 GSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPR 38
Score = 68.4 bits (168), Expect = 6e-15
Identities = 22/38 (57%), Positives = 24/38 (63%)
Query: 593 ALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQG 630
G LP GWE R GRVYFV+H NRTTQ+ DPR
Sbjct: 4 GSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLSA 41
Score = 66.5 bits (163), Expect = 3e-14
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
PLPPGWE+R GRVY+VDHN R+T + P
Sbjct: 7 PLPPGWEIRNTATGRVYFVDHNNRTTQFTDP 37
Score = 66.5 bits (163), Expect = 3e-14
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
PLPPGWE+R GRVY+VDHN R+T + P
Sbjct: 7 PLPPGWEIRNTATGRVYFVDHNNRTTQFTDP 37
Score = 62.7 bits (153), Expect = 7e-13
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
PLPPGWEIR GR Y+VDHN R++ + P
Sbjct: 4 GSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDP 37
Score = 41.9 bits (99), Expect = 2e-05
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
E GR Y+VDHN R++ + P
Sbjct: 13 EIRNTATGRVYFVDHNNRTTQFTDP 37
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 40
Score = 69.2 bits (170), Expect = 3e-15
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 638 ADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
+ LP GWE YT DG +YF++H T++T++ P
Sbjct: 3 SGSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPV 38
Score = 68.4 bits (168), Expect = 7e-15
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 404 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
LP GWE G Y+++H T++T+W P
Sbjct: 6 SGLPYGWEEAYTADGIKYFINHVTQTTSWIHP 37
Score = 68.4 bits (168), Expect = 7e-15
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
LP GWE G Y+++H T++T+W P
Sbjct: 6 SGLPYGWEEAYTADGIKYFINHVTQTTSWIHP 37
Score = 67.6 bits (166), Expect = 1e-14
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 592 DALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPR 627
LP GWE DG YF+NH +TT W P
Sbjct: 3 SGSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPV 38
Score = 63.0 bits (154), Expect = 5e-13
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 369 PPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
LP GWE G +Y+++H T+++SW P
Sbjct: 3 SGSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHP 37
Score = 43.4 bits (103), Expect = 4e-06
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
EE G +Y+++H T+++SW P
Sbjct: 13 EEAYTADGIKYFINHVTQTTSWIHP 37
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21,
WBP4, metal- binding, mRNA processing, mRNA splicing,
nucleus, polymorphism; NMR {Homo sapiens}
Length = 75
Score = 70.1 bits (171), Expect = 5e-15
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 372 EPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQP---------LPPGWELRRDPRGRVYY 422
+P W + G YY D + +S WE+P+ + W G YY
Sbjct: 1 DPSKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYY 60
Query: 423 VDHNTRSTTWQRPN 436
+ T + W++P+
Sbjct: 61 YNTETGESRWEKPD 74
Score = 61.6 bits (149), Expect = 5e-12
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 597 LPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGT 656
W + +G Y+ + + +QWE P ++ + + W +EDG
Sbjct: 3 SKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDL-----KKTAVKTVWVEGLSEDGF 57
Query: 657 RYFVDHNTRSTTFEDP 672
Y+ + T + +E P
Sbjct: 58 TYYYNTETGESRWEKP 73
Score = 59.3 bits (143), Expect = 3e-11
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQP---------LPPGWELRRDPRGRVYYVDHNTRS 534
E + G YY D + +S WE+P+ + W G YY + T
Sbjct: 8 VEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETGE 67
Query: 535 TTWQRPN 541
+ W++P+
Sbjct: 68 SRWEKPD 74
Score = 58.1 bits (140), Expect = 6e-11
Identities = 19/105 (18%), Positives = 28/105 (26%), Gaps = 32/105 (30%)
Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYP 464
P W G YY D + ++ W++P + K
Sbjct: 2 PSKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKK-------------------- 41
Query: 465 QHGVGVSSSSAVSFSTGVTEEDADTYGRRYYVDHNTRSSSWERPQ 509
+ V E G YY + T S WE+P
Sbjct: 42 ------------TAVKTVWVEGLSEDGFTYYYNTETGESRWEKPD 74
Score = 56.6 bits (136), Expect = 2e-10
Identities = 17/117 (14%), Positives = 31/117 (26%), Gaps = 45/117 (38%)
Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYP 569
P W G YY D + ++ W++P + K
Sbjct: 2 PSKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKK-------------------- 41
Query: 570 QHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDP 626
++ + W + DG Y+ N + ++WE P
Sbjct: 42 -------------------------TAVKTVWVEGLSEDGFTYYYNTETGESRWEKP 73
Score = 36.9 bits (85), Expect = 0.002
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 369 PPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404
+ + W G YY + T S WE+P
Sbjct: 39 LKKTAVKTVWVEGLSEDGFTYYYNTETGESRWEKPD 74
Score = 36.2 bits (83), Expect = 0.003
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 642 PLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQ 680
P W T +G Y+ D + ++ +E P +
Sbjct: 2 PSKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLK 40
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR
{Homo sapiens}
Length = 54
Score = 67.9 bits (166), Expect = 2e-14
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 634 GQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKDQK 681
+ LP GWE E+G +FVDH + TT+ DPR D
Sbjct: 3 AKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDN 50
Score = 66.4 bits (162), Expect = 4e-14
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 595 GSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPP 645
G LP GWE+ +G+V+FV+H N+ T + DPR D+ P P
Sbjct: 10 GDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFT------VDDNPTKP 54
Score = 61.4 bits (149), Expect = 2e-12
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 403 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 442
LP GWE D G+V++VDH + TT+ P RL
Sbjct: 9 AGDLPYGWEQETDENGQVFFVDHINKRTTYLDP---RLAF 45
Score = 61.4 bits (149), Expect = 2e-12
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQH 547
LP GWE D G+V++VDH + TT+ P RL
Sbjct: 9 AGDLPYGWEQETDENGQVFFVDHINKRTTYLDP---RLAF 45
Score = 55.6 bits (134), Expect = 3e-10
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 373 PLPPGWEIRQDTYGRRYYVDHNTRSSSWERP 403
LP GWE D G+ ++VDH + +++ P
Sbjct: 11 DLPYGWEQETDENGQVFFVDHINKRTTYLDP 41
Score = 37.5 bits (87), Expect = 7e-04
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERP 508
E++ D G+ ++VDH + +++ P
Sbjct: 17 EQETDENGQVFFVDHINKRTTYLDP 41
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 66.6 bits (163), Expect = 4e-13
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 149 KPNPYIELYVDY-KNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRD--- 204
P+P+ ++ VD +T VKNT PKWN+ + + V I + +H+ +
Sbjct: 25 LPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTDSITISVWNHKKIHKKQGA 84
Query: 205 CTIGEKRLNIYGVLAHYNGKCEHLEITLDLMNDS 238
+G RL + + + L L +N S
Sbjct: 85 GFLGCVRLLSNAISRLKDTGYQRL--DLCKLNPS 116
Score = 37.7 bits (88), Expect = 0.004
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 117 RNSKQTTRVVKNTYQPKWNEEFTV 140
+T VKNT PKWN+ + +
Sbjct: 37 SGQCHSTDTVKNTLDPKWNQHYDL 60
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 66.0 bits (161), Expect = 5e-13
Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 11/104 (10%)
Query: 140 VGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHR 199
G +PYI L VD T + T P W++EF V I +
Sbjct: 28 AVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVFHDA 87
Query: 200 TFRRDCTIGEKRLNIYGVLAHYNGKCE-----------HLEITL 232
D + + +L + + E ++ I L
Sbjct: 88 PIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPEGKVYVIIDL 131
Score = 35.2 bits (81), Expect = 0.032
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 122 TTRVVKNTYQPKWNEEFTV 140
T + T P W++EF
Sbjct: 53 QTATKQKTNSPAWHDEFVT 71
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 65.0 bits (158), Expect = 2e-12
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Query: 134 WNEEFTVGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILF 193
W+ ++ +G LL +PY+ + VD T + T +P +NEEF V+ +
Sbjct: 46 WSLRHSLFKKGHQLL--DPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDGGHLEL 103
Query: 194 RLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCEHLEITLDL 234
+ D + L +L + E +DL
Sbjct: 104 AVFHETPLGYDHFVANCTLQFQELLRTTGAS-DTFEGWVDL 143
Score = 33.0 bits (75), Expect = 0.18
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 120 KQTTRVVKNTYQPKWNEEFTV 140
T + T +P +NEEF
Sbjct: 73 VGQTSTKQKTNKPTYNEEFCA 93
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 49
Score = 60.3 bits (146), Expect = 6e-12
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 397 SSSWERP---QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
SS P + LPPGWE YYVDH + ++ P
Sbjct: 2 SSGSSGPLEREGLPPGWERVESSEFGTYYVDHTNKRAQYRHP 43
Score = 60.3 bits (146), Expect = 6e-12
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 502 SSSWERP---QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
SS P + LPPGWE YYVDH + ++ P
Sbjct: 2 SSGSSGPLEREGLPPGWERVESSEFGTYYVDHTNKRAQYRHP 43
Score = 57.6 bits (139), Expect = 5e-11
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 596 SLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQ 631
LP GWER + Y+V+H N+ Q+ P
Sbjct: 13 GLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGPSS 48
Score = 55.6 bits (134), Expect = 3e-10
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 369 PPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPG 409
E LPPGWE + + YYVDH + + + P G
Sbjct: 9 LEREGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGPSSG 49
Score = 49.5 bits (118), Expect = 4e-08
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 11/55 (20%)
Query: 620 TTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRP 674
++ P + LPPGWE + + Y+VDH + + P
Sbjct: 2 SSGSSGPL-----------EREGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSG 45
Score = 36.8 bits (85), Expect = 0.001
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQPLPPG 514
E + YYVDH + + + P G
Sbjct: 19 ERVESSEFGTYYVDHTNKRAQYRHPSGPSSG 49
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 59.1 bits (143), Expect = 2e-09
Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
Query: 151 NPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTFRRD 204
+PY+++Y+ D K T+V + T P +NE F V + + F + D F R
Sbjct: 42 DPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRH 101
Query: 205 CTIGEKRLNIYG-VLAHYNGKCEHLEITLDLMNDSRVSPPLMSVEMPP 251
IG+ L+ + + +I + + S+ P
Sbjct: 102 DLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLP 149
Score = 46.0 bits (109), Expect = 3e-05
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 150 PNPYIELYVDYKNP----KTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTF 201
+PY++ + + + T + KNT P +NE V+P S+ + ++D+
Sbjct: 173 SDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCI 232
Query: 202 RRDCTIGEKRLNIY 215
+ IG R+
Sbjct: 233 GHNEVIGVCRVGPE 246
Score = 35.2 bits (81), Expect = 0.088
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 117 RNSKQTTRVVKNTYQPKWNEEFT 139
R K+ T + KNT P +NE
Sbjct: 187 RLKKRKTSIKKNTLNPTYNEALV 209
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 54.7 bits (132), Expect = 5e-09
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 149 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV-SPYSIILFRLLDHRTFRRDCTI 207
+PY++L ++ K+ P+WNE F V + + ++ D D +
Sbjct: 30 NMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAV 89
Query: 208 GEKRLNIYGVLA 219
GE + + V
Sbjct: 90 GEATIPLEPVFV 101
Score = 31.6 bits (72), Expect = 0.58
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 119 SKQTTRVVKNTYQPKWNEEFTV 140
+++ P+WNE F
Sbjct: 43 DQKSNVAEGMGTTPEWNETFIF 64
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 56.6 bits (136), Expect = 1e-08
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 586 GVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPP 645
G + S+ WER + P+ Y++NH+ +TT W+ P+ L
Sbjct: 1 GPASQHFLSTSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTE--------LYQSLAD 52
Query: 646 GWEIRYT 652
+R++
Sbjct: 53 LNNVRFS 59
Score = 52.0 bits (124), Expect = 3e-07
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 404 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKH 445
+ WE P YY++H T++T W P L
Sbjct: 10 TSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTELYQSLA 51
Score = 52.0 bits (124), Expect = 3e-07
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKH 550
+ WE P YY++H T++T W P L
Sbjct: 10 TSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTELYQSLA 51
Score = 43.9 bits (103), Expect = 1e-04
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404
+ WE YY++H T+++ W+ P+
Sbjct: 8 LSTSVQGPWERAISPNKVPYYINHETQTTCWDHPK 42
Score = 42.0 bits (98), Expect = 5e-04
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 640 EPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPR 673
+ WE + + Y+++H T++T ++ P+
Sbjct: 9 STSVQGPWERAISPNKVPYYINHETQTTCWDHPK 42
Score = 29.3 bits (65), Expect = 6.8
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 484 EEDADTYGRRYYVDHNTRSSSWERPQ 509
E YY++H T+++ W+ P+
Sbjct: 17 ERAISPNKVPYYINHETQTTCWDHPK 42
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 53.1 bits (128), Expect = 2e-08
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 148 LKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSII-----LFRLLDHRT 200
+ +PYI++ + + K+ TRV++ T P ++E FT PY+ I F +L
Sbjct: 42 MTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR 101
Query: 201 FRRDCTIGEKRLNIYGVLAHYNGKCEHLEITLDLMNDSR 239
F RD IGE + L+ + + ++++
Sbjct: 102 FSRDDIIGEVLIP----LSGIELSEGKMLMNREIISGPS 136
Score = 33.5 bits (77), Expect = 0.10
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 117 RNSKQTTRVVKNTYQPKWNEEFT 139
+ K TRV++ T P ++E FT
Sbjct: 56 KKHKVKTRVLRKTLDPAFDETFT 78
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 54.8 bits (132), Expect = 4e-08
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 149 KPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTFR 202
+PY+++++ D K T+V + T P +NE+FT V + ++ + D F
Sbjct: 39 TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFS 98
Query: 203 RDCTIGEKRL 212
+ IGE ++
Sbjct: 99 KHDIIGEFKV 108
Score = 44.8 bits (106), Expect = 8e-05
Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 90 ELELILCGMQEIDVEDWQRNAIYRHYTRNSKQTTRVVKNTYQPKWNEEFTVG-GQGGGLL 148
E ++ + + V + R+ K Y P + TV + L
Sbjct: 105 EFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPT-AGKLTVVILEAKNLK 163
Query: 149 K------PNPYIELYVDYKNPKT----TRVVKNTYQPKWNEEFTVLVSPYSI----ILFR 194
K +PY+++++ + T + KNT P +NE F+ V I ++
Sbjct: 164 KMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVT 223
Query: 195 LLDHRTFRRDCTIGEKRLNIY 215
+LD+ ++ IG+ +
Sbjct: 224 VLDYDKIGKNDAIGKVFVGYN 244
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 6e-08
Identities = 96/606 (15%), Positives = 164/606 (27%), Gaps = 205/606 (33%)
Query: 4 TDDHYQLAQIIEIWKLIAKEALSNVVVSNEVVKKLCFTTKNMRFDFYPRLMTEWRMTRGI 63
T + +Q+ E + I E +E K + + ++ +
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY-----------VSSLV 72
Query: 64 EEQTKAFLDGFNEVVPIEWLKYFDERELELILCG----------MQEIDVEDWQRNAIYR 113
E F++V+ + L F+ L G +QE D + + +
Sbjct: 73 EPSKVG---QFDQVLNLC-LTEFENC----YLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 114 HYTRNSKQTTRVVKNTYQPKWNEE--------FTV-GGQGGGLLKPNPYI----ELYVDY 160
+Y R + GGQG + Y +LY Y
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG----NTDDYFEELRDLYQTY 180
Query: 161 KNPKTTRVVKNTYQPKWNEEFTVLVS---------PYSIILFRLLDHRTFRRD------C 205
++K + E + L+ + + L++ + D
Sbjct: 181 H-VLVGDLIKFS-----AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 206 TIGEKRLNIYGV--LAHYNGKCEHLEITLDLMNDSRVSPPLMSVEMPPLLRNNTPH---- 259
I + GV LAHY + L T P E+ L+ T H
Sbjct: 235 PIS---CPLIGVIQLAHYVVTAKLLGFT----------PG----ELRSYLKGATGHSQGL 277
Query: 260 -AASPLAQANT--DVVVSHRSVLNE----GIRARSRPPGSENTACPP-----PPHHNHSS 307
A +A+ ++ VS R + G+R P NT+ PP +N
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP---NTSLPPSILEDSLENNEGV 334
Query: 308 PS-------ISSSQ-QQHTQVSNGAVQCTSSSSSSSAAL-----------PPIDLA---- 344
PS ++ Q Q + +N + +L PP L
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTN---SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 345 --QEAGASGGTT------SPRAA--QSNGLP-----------PALP--PEEPLPPGWEIR 381
++A A G S R + LP PA ++ +
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 382 Q--------DTY-GRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTW 432
DT+ G + R S + + + R P V W
Sbjct: 452 AKDIQIPVYDTFDGS------DLRVLSGSISERIVD--CIIRLP------VK-------W 490
Query: 433 QRPNSERLQHF-------KHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEE 485
+ + H G H G+ GV V + + +
Sbjct: 491 ETTTQFKATHILDFGPGGASGLGVLTHRNKDGT--------GVRVIVAGTLDINP----- 537
Query: 486 DADTYG 491
D YG
Sbjct: 538 -DDDYG 542
Score = 55.1 bits (132), Expect = 1e-07
Identities = 61/393 (15%), Positives = 107/393 (27%), Gaps = 123/393 (31%)
Query: 656 TRYFV-DHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSFRWKLSQ-------------- 700
TR H + VP + F L +
Sbjct: 6 TRPLTLSHGSLEHVLL-----VPTASFFIASQLQE---QFNKILPEPTEGFAADDEPTTP 57
Query: 701 ----FRYLCH--HNVLPSHIK--ITVARQTL--FEDSY------HQ-VMRLPAYE---LR 740
++L + V PS + V L FE+ Y H +L L
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 741 RRLYIIFRGEEGLDYGGVSREWF--FLLSHEVLNPMY--CLFEYANKNNYSL------QI 790
+ +I + + +++ + LF + N L Q
Sbjct: 118 KTKELI-------------KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 791 NPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLN--KKLV--MKDIESI 846
N Y + L R LY Y K +L+ D E +
Sbjct: 165 NTDDYF--EEL-------R----DLYQ---TYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 847 DPEFYNSLVWIRDNNIDECGLELYLS---VDFEILG--QVIHHELKENGDKIRVCEE--- 898
+ N L W+ N + YL + ++G Q+ H+ + +
Sbjct: 209 FTQGLNILEWLE--NPSNTPDKDYLLSIPISCPLIGVIQLAHY--------VVTAKLLGF 258
Query: 899 NKEEYMRWYGSGSSCERAIVRREPVCFSSLPGHAVFPWEDLPNSWRFCIEKVGKDTWL-P 957
E + + + +V V + WE S R I + ++
Sbjct: 259 TPGELRSYLKGATGHSQGLV--TAVAIAETDS-----WESFFVSVRKAITVL---FFIGV 308
Query: 958 RSHTCFNRLDLPPYKSYDQMVEKLNYAIEETEG 990
R + + LPP ++E ++E EG
Sbjct: 309 RCYEAYPNTSLPP-----SILED---SLENNEG 333
Score = 34.3 bits (78), Expect = 0.28
Identities = 29/191 (15%), Positives = 50/191 (26%), Gaps = 90/191 (47%)
Query: 456 QGSQRF-----LYPQHGVGVSSSSAVSFSTGVTEEDADTYGRRYY-------VDHNTRSS 503
QGSQ LY +S A V AD + + Y V +N
Sbjct: 1624 QGSQEQGMGMDLY-------KTSKAAQ---DVWNR-ADNHFKDTYGFSILDIVINN---- 1668
Query: 504 SWERPQPL------PPGWELRRDPRGRVY---------------YVDHNTRSTTWQRPNS 542
P L G +R + ++ ++ ++ S T++
Sbjct: 1669 ----PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK- 1723
Query: 543 ERLQH---------------FKHWQGERAHVVSQGSQRFLYPQ------HGVG-----VS 576
L F+ + + L P H +G S
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLK-----------SKGLIPADATFAGHSLGEYAALAS 1772
Query: 577 SSSAVSFSTGV 587
+ +S + V
Sbjct: 1773 LADVMSIESLV 1783
Score = 30.8 bits (69), Expect = 2.9
Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 37/129 (28%)
Query: 777 LFEYANK---NNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRM 833
++ A+ + Y I NP +L F G G+ I ++ ++ +
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNL-TIHFGG-------EKGKRIRENYSAMIFETI 1696
Query: 834 LNKKLVMKDI-ESIDPEFYNSLVWIRDNNIDECGLELYL-----------SVDFEILGQV 881
++ KL + I + I+ S + + L
Sbjct: 1697 VDGKLKTEKIFKEINEHS-TSYTFRSEKG------LLSATQFTQPALTLMEK-------A 1742
Query: 882 IHHELKENG 890
+LK G
Sbjct: 1743 AFEDLKSKG 1751
Score = 29.2 bits (65), Expect = 9.9
Identities = 25/140 (17%), Positives = 36/140 (25%), Gaps = 67/140 (47%)
Query: 561 QGSQRF-----LYPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQPDGRVYFVN 615
QGSQ LY +S A + W R +F +
Sbjct: 1624 QGSQEQGMGMDLY-------KTSKAA----------QDV------WNR-----ADNHFKD 1655
Query: 616 HKNRTTQWEDPRTQGQEIGQIGADEPP-------LPPGWEIR--YTE-------DGTRYF 659
T G I I + P G IR Y+ DG
Sbjct: 1656 ------------TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT 1703
Query: 660 ------VDHNTRSTTFEDPR 673
++ ++ S TF +
Sbjct: 1704 EKIFKEINEHSTSYTFRSEK 1723
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 49.2 bits (118), Expect = 3e-07
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 152 PYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV-SPYSIILFRLLDHRTFRRDCTIGEK 210
P+ L + + T V P+WN+ FT + + ++ + D + +G+
Sbjct: 36 PFCLLELG-NDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKV 94
Query: 211 RLNI 214
+ +
Sbjct: 95 AIPL 98
Score = 37.3 bits (87), Expect = 0.006
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 118 NSKQTTRVVKNTYQPKWNEEFTV 140
N + T V P+WN+ FT
Sbjct: 44 NDRLQTHTVYKNLNPEWNKVFTF 66
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 49.7 bits (119), Expect = 3e-07
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 149 KPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTFR 202
+PY+++++ D K T+V + T P +NE+FT V + ++ + D F
Sbjct: 62 TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 121
Query: 203 RDCTIGEKRLNI 214
+ IGE ++ +
Sbjct: 122 KHDIIGEFKVPM 133
Score = 33.5 bits (77), Expect = 0.14
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 117 RNSKQTTRVVKNTYQPKWNEEFT 139
+ K T+V + T P +NE+FT
Sbjct: 75 KKKKFETKVHRKTLNPVFNEQFT 97
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 48.9 bits (117), Expect = 4e-07
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 149 KPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPY--SIILFRLLDHRTFRRD 204
P+PY+EL++ + K TR N P WNE F ++ P +++ L+D +
Sbjct: 26 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDE 85
Query: 205 CTIGEKRLNIYGV 217
+G + +
Sbjct: 86 T-LGTATFTVSSM 97
Score = 38.1 bits (89), Expect = 0.002
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 117 RNSKQTTRVVKNTYQPKWNEEFT 139
+S++ TR N P WNE F
Sbjct: 39 PDSRKRTRHFNNDINPVWNETFE 61
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 49.3 bits (118), Expect = 4e-07
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 149 KPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTFR 202
+PY+++++ D K T+V + T P +NE+FT V + ++ + D F
Sbjct: 54 TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 113
Query: 203 RDCTIGEKRLNI 214
+ IGE ++ +
Sbjct: 114 KHDIIGEFKVPM 125
Score = 33.9 bits (78), Expect = 0.100
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 117 RNSKQTTRVVKNTYQPKWNEEFT 139
+ K T+V + T P +NE+FT
Sbjct: 67 KKKKFETKVHRKTLNPVFNEQFT 89
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 49.3 bits (118), Expect = 5e-07
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 150 PNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTFRR 203
NPY+++ + D KN K T V + T +P + E +T + +L ++D F R
Sbjct: 54 SNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSR 113
Query: 204 DCTIGE 209
C IG+
Sbjct: 114 HCVIGK 119
Score = 33.9 bits (78), Expect = 0.091
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 117 RNSKQTTRVVKNTYQPKWNEEFT 139
+ + + T V + T +P + E +T
Sbjct: 66 QKNSKQTGVKRKTQKPVFEERYT 88
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group
IV, rotamase; NMR {Emericella nidulans}
Length = 54
Score = 46.4 bits (110), Expect = 5e-07
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 371 EEPLPPGWEIRQD-TYGRRYYVDHNTRSSSWERPQPLPP 408
LP GWE+R + YY + TR S WE P
Sbjct: 5 NTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADTDM 43
Score = 43.0 bits (101), Expect = 9e-06
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 406 LPPGWELRRDP-RGRVYYVDHNTRSTTWQRP---NSERLQHF 443
LP GWE+R + YY + TR + W+ P + E L+ +
Sbjct: 8 LPAGWEVRHSNSKNLPYYFNPATRESRWEPPADTDMETLKMY 49
Score = 43.0 bits (101), Expect = 9e-06
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 511 LPPGWELRRDP-RGRVYYVDHNTRSTTWQRP---NSERLQHF 548
LP GWE+R + YY + TR + W+ P + E L+ +
Sbjct: 8 LPAGWEVRHSNSKNLPYYFNPATRESRWEPPADTDMETLKMY 49
Score = 38.7 bits (90), Expect = 3e-04
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 596 SLPSGWERRVQP-DGRVYFVNHKNRTTQWEDPRTQGQE 632
LP+GWE R Y+ N R ++WE P E
Sbjct: 7 GLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADTDME 44
Score = 33.3 bits (76), Expect = 0.023
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 640 EPPLPPGWEIRYT-EDGTRYFVDHNTRSTTFEDPRPGVPKDQKGAY 684
LP GWE+R++ Y+ + TR + +E P + Y
Sbjct: 5 NTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPP-ADTDMETLKMY 49
Score = 31.0 bits (70), Expect = 0.17
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 489 TYGRRYYVDHNTRSSSWERPQPLPP 513
+ YY + TR S WE P
Sbjct: 19 SKNLPYYFNPATRESRWEPPADTDM 43
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 48.5 bits (116), Expect = 7e-07
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 151 NPYIELYV--DYKNPK-TTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTFRR 203
+ Y++ V + + T + K W E + ++ + + L F R
Sbjct: 45 DCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSR 104
Query: 204 DCTIGEKRLNI 214
GE RL +
Sbjct: 105 HSVAGELRLGL 115
Score = 33.1 bits (76), Expect = 0.14
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 116 TRNSKQTTRVVKNTYQPKWNEEFT 139
T + + T + K W E
Sbjct: 56 TGSVEAQTALKKRQLHTTWEEGLV 79
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 49.5 bits (118), Expect = 8e-07
Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 18/157 (11%)
Query: 152 PYIELYV-----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDC 205
PY+ + + T+ +K + PKWNEE V P ILF + D RD
Sbjct: 31 PYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTRDD 90
Query: 206 TIGEKRLNIYGV-LAHYNGKCEHLEITLDLMNDSRVSPPLMSVEMPPLLRNNTPHAASPL 264
+G+ + +Y + + + + L S S + + P
Sbjct: 91 FLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRL--------KMTYLPK 142
Query: 265 AQANTDVVVSHRSVLNEGIRARSRPPGSENTACPPPP 301
+ + + E P T P PP
Sbjct: 143 NGSEDENADQAEEL--EPGWVVLDQP-DAATHLPHPP 176
Score = 34.1 bits (78), Expect = 0.12
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 117 RNSKQTTRVVKNTYQPKWNEEFTV 140
+ T+ +K + PKWNEE
Sbjct: 44 ILTSVQTKTIKKSLNPKWNEEILF 67
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 48.2 bits (115), Expect = 9e-07
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 149 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPY-----SIILFRLLDHRTFRR 203
KP+P + + K T+ V N P WNE + S + + D T +
Sbjct: 26 KPDPIVSVIFK-DEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQ 84
Query: 204 DCTIGEKRLNI 214
+ IG + +
Sbjct: 85 NKLIGTATVAL 95
Score = 37.0 bits (86), Expect = 0.007
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 117 RNSKQTTRVVKNTYQPKWNEEFT 139
++ K+ T+ V N P WNE
Sbjct: 36 KDEKKKTKKVDNELNPVWNEILE 58
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 48.1 bits (115), Expect = 1e-06
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 149 KPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLL-----DHRTF 201
+P++++Y+ D K+ T+V + P WNE F PY ++ R+L D+ F
Sbjct: 46 TSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRF 105
Query: 202 RRDCTIGEKRLNI 214
R+ IGE + +
Sbjct: 106 SRNDPIGEVSIPL 118
Score = 33.9 bits (78), Expect = 0.083
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 117 RNSKQTTRVVKNTYQPKWNEEFT 139
+ K T+V + P WNE F
Sbjct: 59 KKHKLETKVKRKNLNPHWNETFL 81
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 47.8 bits (114), Expect = 2e-06
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 152 PYIELYV-----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDC 205
PY+ + + T+ +K + PKWNEE V P +LF + D RD
Sbjct: 43 PYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDD 102
Query: 206 TIGEKRLNI 214
+G+ + +
Sbjct: 103 FLGQVDVPL 111
Score = 34.7 bits (80), Expect = 0.049
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 119 SKQTTRVVKNTYQPKWNEEFTV 140
+ T+ +K + PKWNEE
Sbjct: 58 TSVQTKTIKKSLNPKWNEEILF 79
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B
member 1; triple-stranded beta-sheet; NMR {Homo sapiens}
SCOP: b.72.1.1
Length = 55
Score = 44.7 bits (105), Expect = 2e-06
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 356 PRAAQSNGLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPG 409
P + S P A + LP GW QDT G YY T ++ WE P P
Sbjct: 2 PLGSDSFWNPNAFETDSDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGRASPS 54
Score = 42.4 bits (99), Expect = 2e-05
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 392 DHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 438
D +++E LP GW +D G YY T +T W+ P
Sbjct: 6 DSFWNPNAFETDSDLPAGWMRVQDTSGT-YYWHIPTGTTQWEPPGRA 51
Score = 42.4 bits (99), Expect = 2e-05
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 497 DHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
D +++E LP GW +D G YY T +T W+ P
Sbjct: 6 DSFWNPNAFETDSDLPAGWMRVQDTSGT-YYWHIPTGTTQWEPPGRA 51
Score = 33.6 bits (76), Expect = 0.020
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 597 LPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQ 629
LP+GW R G Y+ + TTQWE P
Sbjct: 20 LPAGWMRVQDTSGT-YYWHIPTGTTQWEPPGRA 51
Score = 30.9 bits (69), Expect = 0.16
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 640 EPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVP 677
+ LP GW R + Y+ T +T +E P P
Sbjct: 17 DSDLPAGWM-RVQDTSGTYYWHIPTGTTQWEPPGRASP 53
Score = 27.8 bits (61), Expect = 2.6
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 491 GRRYYVDHNTRSSSWERPQPLPPG 514
YY T ++ WE P P
Sbjct: 31 SGTYYWHIPTGTTQWEPPGRASPS 54
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 45.4 bits (108), Expect = 9e-06
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 149 KPNPY--IELYVDYKNPKT--TRVVKNTYQPKWNEEFTVLVSPYSI---ILFRLLDHRTF 201
+PY ++L D KN T+ +++T P+WNE FT + P + + D
Sbjct: 36 LSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRT 95
Query: 202 RRDCTIGEKRLNI 214
R+ +G +
Sbjct: 96 TRNDFMGSLSFGV 108
Score = 35.0 bits (81), Expect = 0.030
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 116 TRNSKQTTRVVKNTYQPKWNEEFT 139
SKQ T+ +++T P+WNE FT
Sbjct: 50 KNESKQKTKTIRSTLNPQWNESFT 73
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 45.0 bits (107), Expect = 1e-05
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 149 KPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLL-----DHR 199
PNPY++ Y+ + + T++ + T P +NE + R L
Sbjct: 39 DPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAE 98
Query: 200 TFRRDCTIGE 209
+ R + +G
Sbjct: 99 SLRENFFLGG 108
Score = 34.2 bits (79), Expect = 0.067
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 116 TRNSKQTTRVVKNTYQPKWNEEFT 139
+ SK+ T++ + T P +NE
Sbjct: 53 HKTSKRKTKISRKTRNPTFNEMLV 76
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain,
ordered linker; 1.60A {Candida albicans}
Length = 177
Score = 45.6 bits (108), Expect = 1e-05
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 371 EEPLPPGWEIRQ-DTYGRRYYVDHNTRSSSWERPQP 405
LPP W IR ++ + Y+++ +T SSW+ P
Sbjct: 5 STGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYG 40
Score = 41.4 bits (97), Expect = 4e-04
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 636 IGADEPPLPPGWEIRYTE-DGTRYFVDHNTRSTTFEDPRPGVPKDQKGAYGVPKAYERSF 694
+ + LPP W IR + YF++ +T ++++ P D++ V AY F
Sbjct: 1 MASTSTGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPY---GTDKE----VLNAYIAKF 53
Query: 695 RWKLSQFRYLCHHNVLPSHIKITV 718
+ + V SH+ I
Sbjct: 54 KNNGYKPLVNEDGQVRVSHLLIKN 77
Score = 36.4 bits (84), Expect = 0.017
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 596 SLPSGWERRV-QPDGRVYFVNHKNRTTQWEDPRTQGQEI 633
LP W RV + + YF+N + W+ P +E+
Sbjct: 7 GLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYGTDKEV 45
Score = 35.6 bits (82), Expect = 0.037
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 406 LPPGWELRRDP-RGRVYYVDHNTRSTTWQRP 435
LPP W +R + Y+++ +T ++W P
Sbjct: 8 LPPNWTIRVSRSHNKEYFLNQSTNESSWDPP 38
Score = 35.6 bits (82), Expect = 0.037
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 511 LPPGWELRRDP-RGRVYYVDHNTRSTTWQRP 540
LPP W +R + Y+++ +T ++W P
Sbjct: 8 LPPNWTIRVSRSHNKEYFLNQSTNESSWDPP 38
Score = 29.8 bits (67), Expect = 2.8
Identities = 8/39 (20%), Positives = 20/39 (51%)
Query: 472 SSSAVSFSTGVTEEDADTYGRRYYVDHNTRSSSWERPQP 510
+S++ T + ++ + Y+++ +T SSW+ P
Sbjct: 2 ASTSTGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYG 40
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 45.0 bits (107), Expect = 1e-05
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 149 KPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLL-----DHR 199
+PY++L++ N T+ ++NT P WNE + + L D
Sbjct: 49 LADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDED 108
Query: 200 TFRRDCTIGEKRLNI 214
F + IGE R ++
Sbjct: 109 KFGHNEFIGETRFSL 123
Score = 34.6 bits (80), Expect = 0.052
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 116 TRNSKQTTRVVKNTYQPKWNEEFT 139
++++K T+ ++NT P WNE
Sbjct: 63 SKSNKLRTKTLRNTRNPVWNETLQ 86
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 44.6 bits (106), Expect = 2e-05
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 149 KPNPYIELYVDYKNPKT----TRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRT 200
+PY+++++ YK+ + T K P +NE F + + I+ ++D
Sbjct: 36 TSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDK 95
Query: 201 FRRDCTIGEKRLNIY 215
R+ IG+ L+
Sbjct: 96 LSRNDVIGKIYLSWK 110
Score = 32.7 bits (75), Expect = 0.22
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 117 RNSKQTTRVVKNTYQPKWNEEFT 139
R K+ T K P +NE F
Sbjct: 51 RVEKKKTVTKKRNLNPIFNESFA 73
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant
(R14A), oncogenic transformation, small molecule cycle,
rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo
sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A*
2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A*
3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A*
1f8a_B* ...
Length = 166
Score = 44.8 bits (106), Expect = 3e-05
Identities = 19/34 (55%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 371 EEPLPPGWEIRQ-DTYGRRYYVDHNTRSSSWERP 403
EE LPPGWE + GR YY +H T +S WERP
Sbjct: 7 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 40
Score = 40.6 bits (95), Expect = 6e-04
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 638 ADEPPLPPGWEIRYTEDGTR-YFVDHNTRSTTFEDPRPGVPKDQKGAYGVP 687
ADE LPPGWE + R Y+ +H T ++ +E P K G P
Sbjct: 5 ADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEP 55
Score = 37.1 bits (86), Expect = 0.011
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 597 LPSGWERRV-QPDGRVYFVNHKNRTTQWEDP 626
LP GWE+ + + GRVY+ NH +QWE P
Sbjct: 10 LPPGWEKAMSRSSGRVYYFNHITNASQWERP 40
Score = 36.7 bits (85), Expect = 0.011
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 405 PLPPGWELRRDP-RGRVYYVDHNTRSTTWQRP 435
LPPGWE GRVYY +H T ++ W+RP
Sbjct: 9 KLPPGWEKAMSRSSGRVYYFNHITNASQWERP 40
Score = 36.7 bits (85), Expect = 0.011
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 510 PLPPGWELRRDP-RGRVYYVDHNTRSTTWQRP 540
LPPGWE GRVYY +H T ++ W+RP
Sbjct: 9 KLPPGWEKAMSRSSGRVYYFNHITNASQWERP 40
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 43.3 bits (102), Expect = 5e-05
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 13/75 (17%)
Query: 152 PYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV-SPYSIILFRLLDH-----------R 199
PY+ + V K K T+ + P W E F + I R+LD
Sbjct: 40 PYVTVQVG-KTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRF 98
Query: 200 TFRRDCTIGEKRLNI 214
D +G+ + +
Sbjct: 99 KRESDDFLGQTIIEV 113
Score = 35.6 bits (82), Expect = 0.026
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 118 NSKQTTRVVKNTYQPKWNEEFTV 140
+K+ T+ + P W E F
Sbjct: 48 KTKKRTKTIYGNLNPVWEENFHF 70
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 43.2 bits (102), Expect = 7e-05
Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 150 PNPYIELYV-----DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRT 200
I + V TR + + +NE F V +S ++ + +
Sbjct: 64 QKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDR 123
Query: 201 FRRDCTIGEKRLNI 214
+ +G ++++
Sbjct: 124 SHLEECLGGAQISL 137
Score = 30.5 bits (69), Expect = 1.3
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 117 RNSKQTTRVVKNTYQPKWNEEFTVG 141
TR + + +NE F V
Sbjct: 79 TTCLFRTRPLDASDTLVFNEVFWVS 103
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 42.8 bits (101), Expect = 9e-05
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 149 KPNPYIELYVDYKNPKT----TRVVKNTYQPKWNEEFTVLVSPY---SIILFRLLDHRTF 201
+PY++L + T+ +K + P+WNE F + + + D
Sbjct: 51 LSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT 110
Query: 202 RRDCTIGEKRLNI 214
R+ +G I
Sbjct: 111 SRNDFMGSLSFGI 123
Score = 34.7 bits (80), Expect = 0.046
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 116 TRNSKQTTRVVKNTYQPKWNEEFT 139
SKQ T+ +K + P+WNE F
Sbjct: 65 KSESKQKTKTIKCSLNPEWNETFR 88
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 42.8 bits (101), Expect = 1e-04
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 149 KPNPYIELYVDYKNPKT----TRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRT 200
+PY+++++ + T + KNT P +NE F+ V I ++ +LD+
Sbjct: 45 LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK 104
Query: 201 FRRDCTIGEKRLNIY 215
++ IG+ +
Sbjct: 105 IGKNDAIGKVFVGYN 119
Score = 31.6 bits (72), Expect = 0.58
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 117 RNSKQTTRVVKNTYQPKWNEEFT 139
R K+ T + KNT P +NE F+
Sbjct: 60 RLKKKKTTIKKNTLNPYYNESFS 82
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 42.9 bits (101), Expect = 1e-04
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 150 PNPYIELYV--DYKNP--KTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLL--DHRTFRR 203
P PY+++Y+ + K TR+ + T P + + SP +L ++ D+
Sbjct: 52 PAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDH 111
Query: 204 DCTIGEKRLNI 214
C +G ++ +
Sbjct: 112 KCFMGVAQILL 122
Score = 33.6 bits (77), Expect = 0.17
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 117 RNSKQTTRVVKNTYQPKWNEEFT 139
+K+ TR+ + T P + +
Sbjct: 66 CIAKKKTRIARKTLDPLYQQSLV 88
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 41.9 bits (99), Expect = 1e-04
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 150 PNPYIELYV--DYKNP--KTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTF 201
NPY++ Y+ D + T + ++T P ++E + + + F + H F
Sbjct: 45 SNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRF 104
Query: 202 RRDCTIGEKRLNI 214
R+ +GE + +
Sbjct: 105 GRNTFLGEAEIQM 117
Score = 33.5 bits (77), Expect = 0.13
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 116 TRNSKQTTRVVKNTYQPKWNEEFT 139
+R K+ T + ++T P ++E
Sbjct: 58 SRQGKRKTSIKRDTVNPLYDETLR 81
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 44.5 bits (104), Expect = 2e-04
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 149 KPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPY--SIILFRLLDHRTFRRD 204
P+PY+EL++ + K TR N P WNE F ++ P +++ L+D D
Sbjct: 41 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV-MD 99
Query: 205 CTIGEKRLNI 214
T+G +
Sbjct: 100 ETLGTATFTV 109
Score = 35.7 bits (81), Expect = 0.095
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 116 TRNSKQTTRVVKNTYQPKWNEEFT 139
T +S++ TR N P WNE F
Sbjct: 53 TPDSRKRTRHFNNDINPVWNETFE 76
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 41.6 bits (98), Expect = 2e-04
Identities = 12/83 (14%), Positives = 33/83 (39%), Gaps = 18/83 (21%)
Query: 150 PNPYIELY-------------VDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLL 196
+P++++Y + + T+ V+ + P+WN+ ++ + L
Sbjct: 39 SDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTL 98
Query: 197 -----DHRTFRRDCTIGEKRLNI 214
D+ F + +GE +++
Sbjct: 99 EVTVWDYDRFSSNDFLGEVLIDL 121
Score = 35.5 bits (82), Expect = 0.023
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 105 DWQRNAIYRHYTRNSKQTTRVVKNTYQPKWNEEFT 139
+ + ++ + K+ T+ V+ + P+WN+
Sbjct: 50 GRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVI 84
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 41.6 bits (98), Expect = 2e-04
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 150 PNPYIELYVDYKNPKT----TRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTF 201
+PY+++ + + + T V K T +NE F + S+ + F +LD
Sbjct: 51 SDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERG 110
Query: 202 RRDCTIGE 209
R+ IG
Sbjct: 111 SRNEVIGR 118
Score = 32.7 bits (75), Expect = 0.27
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 117 RNSKQTTRVVKNTYQPKWNEEFT 139
R SK+ T V K T +NE F
Sbjct: 65 RISKKKTHVKKCTPNAVFNELFV 87
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 41.6 bits (98), Expect = 2e-04
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 150 PNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI---ILFRLLDH-RTF 201
+PY+++ + + T+ V + P ++E F V +L + +
Sbjct: 47 CDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQS 106
Query: 202 RRDCTIGEKRLNI 214
R+ IG +
Sbjct: 107 RQSGLIGCMSFGV 119
Score = 34.7 bits (80), Expect = 0.048
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 116 TRNSKQTTRVVKNTYQPKWNEEFT 139
+R Q T+ V + P ++E F
Sbjct: 60 SRLRHQKTQTVPDCRDPAFHEHFF 83
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 5e-04
Identities = 77/586 (13%), Positives = 164/586 (27%), Gaps = 135/586 (23%)
Query: 2 EMTDDHYQLAQIIEIW--KLIAK------EALSNVVVSNEVVKKLCFTTKNMRFDFYPRL 53
E + YQ I+ ++ + + + ++S E + + +K+ RL
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-IMSKDAVSGTL-RL 67
Query: 54 MTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDERELELILCGMQEIDVEDWQRNAIYR 113
W + EE + F++ + ++L M I E Q + + R
Sbjct: 68 F--WTLLSKQEEMVQKFVEEVLRI-NYKFL--------------MSPIKTEQRQPSMMTR 110
Query: 114 HY--TRNSKQTTRVVKNTYQPKWNEEFTVGGQGGGLLKPNPYIELYVDYKNPKTTRVVKN 171
Y R+ V Y + + Q L+P + + + KT V +
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALD 169
Query: 172 TYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNIYGVLAHYNGKCEHLEIT 231
+ + + I F L + + VL ++
Sbjct: 170 VCL---SYKV-QCKMDFKI--FWL----NLKNCNSPET-------VLEMLQKLLYQIDPN 212
Query: 232 LDLMNDSRVSPPLMSVEMPPLLRN---NTPHAASPLAQANTDVVVSHRSVLNE-GIRAR- 286
+D + L + LR + P+ L N V + N + +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN----VQNAKAWNAFNLSCKI 268
Query: 287 ---SRPPGSENTACPPPPHHNHSSPSISSSQQQHTQVSNGAVQCTSSSS----SSSAALP 339
+R + +S++ H + + ++ T
Sbjct: 269 LLTTRFKQVTD--------------FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 340 PIDLAQEAGASGGTTSPRAAQSNGLPPALPPEEPLPPGWEIRQDTYGRRYYVD--HNTRS 397
P DL +E TT+PR + + D + + D
Sbjct: 315 PQDLPREV----LTTNPRRL---SIIAESIRDGL------ATWDNW-KHVNCDKLTTIIE 360
Query: 398 SSWERPQPLPPGWELRRDPRGRVYYVD-----------HNTRSTTWQRPNSERLQHFKHW 446
SS L P E R+ + S W + +
Sbjct: 361 SSLNV---LEPA-EYRK------MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN- 409
Query: 447 QGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDADTYGRRYYVDHNTRSSSWE 506
+ + +V + + + + + + + R VDH +++
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELK---------VKLENEYALHRSIVDHYNIPKTFD 460
Query: 507 RPQPLPPGWELRRDPRGRVY-YVDHNTRSTTWQRPNSERLQHFKHW 551
+PP + Y ++ H+ ++ + ER+ F+
Sbjct: 461 SDDLIPPYLD------QYFYSHIGHHLKNIE----HPERMTLFRMV 496
Score = 31.0 bits (69), Expect = 2.8
Identities = 89/665 (13%), Positives = 156/665 (23%), Gaps = 216/665 (32%)
Query: 302 HHNHSSPSISSSQQQHT-----QVSNGAV----QCTSSSSSSSAALPPI---DLAQEAGA 349
HH+H + + Q+ V A C + L + A
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 350 SGGT----TSPRAAQSNGLPPALPPEEPLPP--GW-------EIRQDTYGRRYYVDHNTR 396
GT + + Q + + EE L + E RQ + R Y++ R
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFV--EEVLRINYKFLMSPIKTEQRQPSMMTRMYIE--QR 116
Query: 397 SSSWERPQPLPPGWELRRDP----RGRVYYVDHNTRST---------TW---QRPNSERL 440
+ Q R P R + + TW S ++
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 441 QH---FK-HW----QGERAHVVSQGSQRFLY---PQHGVGVSSSSAVSFSTGVTEEDADT 489
Q FK W V + Q+ LY P SS +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI----HSIQA 232
Query: 490 YGRRYYVDHNTRSS------SWERPQPLPPGWELRRDPRGRVYYVDHNTRS--TTWQRPN 541
RR + + + + TT +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNA-------KAWN--------AFNLSCKILLTTRFKQV 277
Query: 542 SERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEED---DALGSLP 598
++ L H+ L P + +D + L + P
Sbjct: 278 TDFLS-----AATTTHISLDHHSMTLTPDEVKSLLLKYL-----DCRPQDLPREVLTTNP 327
Query: 599 ---SGWERRVQPDGRVYFVNHKNRTTQWEDP------RTQGQEIGQIGADE--------- 640
S ++ + W+ + + E
Sbjct: 328 RRLSIIAESIR--------DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 641 --P---PLPPG-----WEIRYTEDGTRYFVDH-NTRSTTFEDPRPG------------VP 677
P +P W D V+ + S + P+ V
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSD-VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 678 KDQKGA--------YGVPKAYERSFRWKLSQFRYLCHHNVLPSHIKITVARQTLFEDSYH 729
+ + A Y +PK ++ +Y H + H+K E
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH--IGHHLK--NIEHP--ER--- 489
Query: 730 QVMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANK-NNYSL 788
L R ++ LD+ FL K + S
Sbjct: 490 -------MTLFRMVF--------LDFR-------FL---------------EQKIRHDST 512
Query: 789 QINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLVMKDIESIDP 848
N + + L KF +I P Y+R++N ++ + I+
Sbjct: 513 AWNASGSILNT-LQQLKFYKPYICD------------NDPKYERLVN--AILDFLPKIEE 557
Query: 849 EFYNS 853
S
Sbjct: 558 NLICS 562
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3;
Fe65-like protein 2, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Length = 39
Score = 37.3 bits (86), Expect = 7e-04
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
LPPGW D G YY + ST WQRP
Sbjct: 8 GLPPGWRKIHDAAG-TYYWHVPSGSTQWQRP 37
Score = 37.3 bits (86), Expect = 7e-04
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
LPPGW D G YY + ST WQRP
Sbjct: 8 GLPPGWRKIHDAAG-TYYWHVPSGSTQWQRP 37
Score = 35.4 bits (81), Expect = 0.003
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 590 EDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDP 626
+ G LP GW + G Y+ + + +TQW+ P
Sbjct: 2 SSGSSGGLPPGWRKIHDAAG-TYYWHVPSGSTQWQRP 37
Score = 33.8 bits (77), Expect = 0.011
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 371 EEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404
LPPGW D G YY + S+ W+RP
Sbjct: 6 SGGLPPGWRKIHDAAG-TYYWHVPSGSTQWQRPT 38
Score = 26.9 bits (59), Expect = 3.6
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 638 ADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDP 672
LPPGW + GT Y+ + ST ++ P
Sbjct: 4 GSSGGLPPGWRKIHDAAGT-YYWHVPSGSTQWQRP 37
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 39.6 bits (93), Expect = 8e-04
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 150 PNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLL-----DHRT 200
NPY+++Y KN + T+ VK T +PKWN+ F R+L D
Sbjct: 39 RNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQAR 98
Query: 201 F--RRDCTIGEKRLNI 214
+GE + +
Sbjct: 99 VREEESEFLGEILIEL 114
Score = 35.0 bits (81), Expect = 0.027
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 116 TRNSKQTTRVVKNTYQPKWNEEFT 139
+ +K+ T+ VK T +PKWN+ F
Sbjct: 52 SDKNKRRTKTVKKTLEPKWNQTFI 75
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 40.4 bits (95), Expect = 8e-04
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 150 PNPY--IELYVDYKNPKT--TRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTF 201
+P+ + L D T++ K T P++NEEF + + + + D+
Sbjct: 58 SDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIG 117
Query: 202 RRDCTIGE 209
+ + IG
Sbjct: 118 KSNDYIGG 125
Score = 33.1 bits (76), Expect = 0.19
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 117 RNSKQTTRVVKNTYQPKWNEEFT 139
+ +K T++ K T P++NEEF
Sbjct: 72 KKAKHKTQIKKKTLNPEFNEEFF 94
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.22.1.1
Length = 40
Score = 36.3 bits (84), Expect = 0.001
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 403 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS 437
W + P G+VYY + TR + W +P+
Sbjct: 5 SSGTEEIWVENKTPDGKVYYYNARTRESAWTKPDG 39
Score = 36.3 bits (84), Expect = 0.001
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 508 PQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNS 542
W + P G+VYY + TR + W +P+
Sbjct: 5 SSGTEEIWVENKTPDGKVYYYNARTRESAWTKPDG 39
Score = 35.9 bits (83), Expect = 0.002
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 367 ALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPL 406
W + G+ YY + TR S+W +P +
Sbjct: 1 GSSGSSGTEEIWVENKTPDGKVYYYNARTRESAWTKPDGV 40
Score = 34.4 bits (79), Expect = 0.006
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 593 ALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDP 626
W PDG+VY+ N + R + W P
Sbjct: 4 GSSGTEEIWVENKTPDGKVYYYNARTRESAWTKP 37
Score = 31.3 bits (71), Expect = 0.083
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 491 GRRYYVDHNTRSSSWERPQPL 511
G+ YY + TR S+W +P +
Sbjct: 20 GKVYYYNARTRESAWTKPDGV 40
Score = 27.1 bits (60), Expect = 2.5
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 638 ADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDP 672
+ W T DG Y+ + TR + + P
Sbjct: 3 SGSSGTEEIWVENKTPDGKVYYYNARTRESAWTKP 37
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 39.2 bits (92), Expect = 0.001
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 150 PNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLL-----DHRT 200
NPY+++Y KN + T+ VK T +PKWN+ F R+L D
Sbjct: 42 RNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQAR 101
Query: 201 FR--RDCTIGEKRLNI 214
R +GE + +
Sbjct: 102 VREEESEFLGEILIEL 117
Score = 35.0 bits (81), Expect = 0.031
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 116 TRNSKQTTRVVKNTYQPKWNEEFT 139
+ +K+ T+ VK T +PKWN+ F
Sbjct: 55 SDKNKRRTKTVKKTLEPKWNQTFI 78
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 38.5 bits (90), Expect = 0.002
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 149 KPNPYIELYV--DYKNP--KTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRT 200
+PY+ +Y+ D + + T V K T P +++ F VS + + + +
Sbjct: 43 GSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGG 102
Query: 201 FRRD--CTIGEKRLNI 214
F +G+ + +
Sbjct: 103 FLSKDKGLLGKVLVAL 118
Score = 34.7 bits (80), Expect = 0.051
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 116 TRNSKQTTRVVKNTYQPKWNEEFT 139
R+ ++ T V K T P +++ F
Sbjct: 57 RRSGRRKTHVSKKTLNPVFDQSFD 80
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich
peptides, protein-protein interactions, structural
protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A
1zr7_A 2dyf_A
Length = 41
Score = 35.6 bits (82), Expect = 0.003
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 593 ALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDP 626
++GS S W PDGR Y+ N + + + WE P
Sbjct: 6 SVGSAKSMWTEHKSPDGRTYYYNTETKQSTWEKP 39
Score = 35.2 bits (81), Expect = 0.004
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 398 SSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
S W + P GR YY + T+ +TW++P
Sbjct: 2 SRRASVGSAKSMWTEHKSPDGRTYYYNTETKQSTWEKP 39
Score = 35.2 bits (81), Expect = 0.004
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 503 SSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
S W + P GR YY + T+ +TW++P
Sbjct: 2 SRRASVGSAKSMWTEHKSPDGRTYYYNTETKQSTWEKP 39
Score = 32.1 bits (73), Expect = 0.042
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 373 PLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQ 404
W + GR YY + T+ S+WE+P
Sbjct: 9 SAKSMWTEHKSPDGRTYYYNTETKQSTWEKPD 40
Score = 29.4 bits (66), Expect = 0.40
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 491 GRRYYVDHNTRSSSWERPQ 509
GR YY + T+ S+WE+P
Sbjct: 22 GRTYYYNTETKQSTWEKPD 40
Score = 29.4 bits (66), Expect = 0.42
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 634 GQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDP 672
G A W + DG Y+ + T+ +T+E P
Sbjct: 1 GSRRASVGSAKSMWTEHKSPDGRTYYYNTETKQSTWEKP 39
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 37.7 bits (87), Expect = 0.004
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 149 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI-ILFRLLDHRTFRRDCTI 207
K N Y+ L V N K+T + QP W ++F ++ + + + + +
Sbjct: 22 KFNTYVTLKVQ--NVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKGLIWDT-MV 78
Query: 208 GEKRLNIYGVLAH 220
G + + +
Sbjct: 79 GTVWIPLRTIRQS 91
Score = 32.6 bits (74), Expect = 0.23
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 118 NSKQTTRVVKNTYQPKWNEEFT 139
N K TT V+ + QP W ++F
Sbjct: 33 NVKSTTIAVRGS-QPSWEQDFM 53
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW
domain, beta sheet, Fe65, protein binding; 1.33A {Homo
sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Length = 38
Score = 34.7 bits (79), Expect = 0.006
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 374 LPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPP 408
LP GW QDT G YY T ++ WE P P
Sbjct: 4 LPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGRASP 37
Score = 33.1 bits (75), Expect = 0.020
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 406 LPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 438
LP GW +D G YY T +T W+ P
Sbjct: 4 LPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGRA 35
Score = 33.1 bits (75), Expect = 0.020
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 511 LPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSE 543
LP GW +D G YY T +T W+ P
Sbjct: 4 LPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGRA 35
Score = 29.3 bits (65), Expect = 0.44
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 597 LPSGWERRVQPDGRVYFVNHKNRTTQWEDP 626
LP+GW R G Y+ + TTQWE P
Sbjct: 4 LPAGWMRVQDTSG-TYYWHIPTGTTQWEPP 32
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V
hearing, membrane, synapse, transmembrane, membrane
protein; 1.95A {Rattus norvegicus}
Length = 144
Score = 37.3 bits (86), Expect = 0.006
Identities = 12/102 (11%), Positives = 36/102 (35%), Gaps = 17/102 (16%)
Query: 149 KPNPYIELYVDYKNPKTTRVVKNTYQP-KWNEEFTVLVS----PYSIILFRLLDHRTFRR 203
+ + ++ +RV++N ++E F V+ ++ ++ ++
Sbjct: 36 RADRIAKVTFR-GQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFS 94
Query: 204 DCTIG-----------EKRLNIYGVLAHYNGKCEHLEITLDL 234
+ IG E R+ + L N +++++
Sbjct: 95 NKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEV 136
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich,
phosphotyrosine binding, TCR, T-cell, diacylglycerol,
phorbol ester, structural genomics; NMR {Homo sapiens}
Length = 138
Score = 37.0 bits (85), Expect = 0.009
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 151 NPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDH-RTFRRDC 205
NPY + V +N + K T P W+ F ++ ++ + +
Sbjct: 33 NPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKGRVMQIIVKGKNVDLISET 92
Query: 206 TIG 208
T+
Sbjct: 93 TVE 95
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 38.1 bits (89), Expect = 0.010
Identities = 29/277 (10%), Positives = 71/277 (25%), Gaps = 33/277 (11%)
Query: 391 VDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGER 450
+D + R +E P P L G +++ ++ ++ +
Sbjct: 46 LDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGAN----------KIGKL---SKKG 92
Query: 451 AHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDADTYGRRYYV-DHNTRSSSWERPQ 509
Q P +G+ + + F G R + ++ P
Sbjct: 93 GFTEYPLPQPDSGP-YGITEGLNGDIWF--------TQLNGDRIGKLTADGTIYEYDLPN 143
Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYP 569
+ +++ ++ S + ++ ++ G+ L+
Sbjct: 144 KGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALW- 202
Query: 570 QHGVGVSSSSAVSF--STGVTEEDDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPR 627
+ + +TG E D + ++F
Sbjct: 203 ---FVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259
Query: 628 TQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNT 664
QE + P I + +DG+ +F
Sbjct: 260 NTIQEYQLQTENAEP----HGITFGKDGSVWFALKCK 292
Score = 36.5 bits (85), Expect = 0.029
Identities = 31/254 (12%), Positives = 73/254 (28%), Gaps = 35/254 (13%)
Query: 415 DPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSS 474
G+V++ H + + + + + S ++
Sbjct: 28 SEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIW----------- 76
Query: 475 AVSFSTGVTEEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRS 534
TE A+ G+ + + + PQP + + G +++ N
Sbjct: 77 -------FTENGANKIGK---LSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDR 126
Query: 535 TTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSF--STGVTEE-- 590
+ ++ +G ++ GS L+ + ++++ +TG EE
Sbjct: 127 IGKLTADGTIYEYDLPNKGSYPAFITLGSDNALW----FTENQNNSIGRITNTGKLEEYP 182
Query: 591 DDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIR 650
+ P G DG ++FV + E + P I
Sbjct: 183 LPTNAAAPVGI--TSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARP----HAIT 236
Query: 651 YTEDGTRYFVDHNT 664
++ +F +
Sbjct: 237 AGKNSEIWFTEWGA 250
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal
transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB:
2jup_W 2rly_W 2rm0_W 2nnt_A
Length = 37
Score = 33.9 bits (78), Expect = 0.010
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 405 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 436
W + G+ YY ++ T +TW++P
Sbjct: 3 TAVSEWTEYKTADGKTYYYNNRTLESTWEKPQ 34
Score = 33.9 bits (78), Expect = 0.010
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 510 PLPPGWELRRDPRGRVYYVDHNTRSTTWQRPN 541
W + G+ YY ++ T +TW++P
Sbjct: 3 TAVSEWTEYKTADGKTYYYNNRTLESTWEKPQ 34
Score = 33.2 bits (76), Expect = 0.018
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 373 PLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPL 406
W + G+ YY ++ T S+WE+PQ L
Sbjct: 3 TAVSEWTEYKTADGKTYYYNNRTLESTWEKPQEL 36
Score = 33.2 bits (76), Expect = 0.019
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 598 PSGWERRVQPDGRVYFVNHKNRTTQWEDP 626
S W DG+ Y+ N++ + WE P
Sbjct: 5 VSEWTEYKTADGKTYYYNNRTLESTWEKP 33
Score = 31.6 bits (72), Expect = 0.061
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 491 GRRYYVDHNTRSSSWERPQPL 511
G+ YY ++ T S+WE+PQ L
Sbjct: 16 GKTYYYNNRTLESTWEKPQEL 36
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase,
structural genomics, 3-D structure, mixed alpha/beta
protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB:
2wqk_A
Length = 251
Score = 37.1 bits (87), Expect = 0.020
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 31/76 (40%)
Query: 357 RAAQSNGLP---------PALPPEEPLPPGWEI-RQDTYGRRYYVDHNTRSSSWERPQPL 406
+ + G+P P L EE G ++ RQ G+R Y +
Sbjct: 147 KKVLNEGIPEDTYLNVNIPNLRYEEI--KGIKVTRQ---GKRAYKER------------- 188
Query: 407 PPGWELRRDPRGRVYY 422
DP G+ +Y
Sbjct: 189 ---VFKYIDPYGKPFY 201
Score = 28.6 bits (65), Expect = 8.8
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 16/37 (43%)
Query: 491 GRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYY 527
G+R Y + DP G+ +Y
Sbjct: 181 GKRAYKER----------------VFKYIDPYGKPFY 201
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 37.6 bits (86), Expect = 0.022
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 151 NPYIELYVDYKNPKTTRVVKNTYQPKWNEEFT---VLVSPYSIILFRLLDHRTFRRD 204
+ Y++++ + +T VV N P+W ++ VL+S + ++ D D
Sbjct: 415 DAYLKVFFGGQEFRT-GVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDD 470
Score = 34.1 bits (77), Expect = 0.22
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 104 EDWQRNAIYRHYTRNS-KQTTRVVKNTYQPKWNEEFTVG 141
+ Y + T VV N P+W ++
Sbjct: 409 DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFE 447
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.9 bits (82), Expect = 0.028
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 34/92 (36%)
Query: 51 PRLMTEWRMTRGIEEQTKAFLDGFNEVVPIEWLKYFDE----RELELILCGMQEIDVEDW 106
P + +WR EEQ K L+ D E E ++++ +W
Sbjct: 84 PESIRKWR-----EEQRKR-------------LQELDAASKVMEQEWREKAKKDLE--EW 123
Query: 107 QRNAIYRHYTRNSKQTTRVVKNTYQPKWNEEF 138
+ S+Q + N ++ F
Sbjct: 124 -----NQRQ---SEQVEKNKINNR--IADKAF 145
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase;
HET: MSE; 1.89A {Coxiella burnetii}
Length = 261
Score = 36.7 bits (86), Expect = 0.028
Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 31/76 (40%)
Query: 357 RAAQSNGLP---------PALPPEEPLPPGWEI-RQDTYGRRYYVDHNTRSSSWERPQPL 406
+ + + LP P LP EE G+E+ R G R+ +
Sbjct: 155 QRIEKDPLPPSTILNINVPDLPYEEL--KGFEVTRL---GTRHRAEP------------- 196
Query: 407 PPGWELRRDPRGRVYY 422
+ DPRG Y
Sbjct: 197 ---TIRQIDPRGHPIY 209
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 36.5 bits (85), Expect = 0.031
Identities = 33/264 (12%), Positives = 73/264 (27%), Gaps = 55/264 (20%)
Query: 415 DPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSS 474
+G+V+ H + + + ++ + ++ S ++
Sbjct: 23 SDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVW----------- 71
Query: 475 AVSFSTGVTEEDADTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHN--- 531
TE A+ GR + + P P + + P G +++ + N
Sbjct: 72 -------FTENAANKIGR---ITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNR 121
Query: 532 -------TRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSF- 583
+ ++ PN +G ++ GS L+ + ++A+
Sbjct: 122 IGRITDDGKIREYELPN----------KGSYPSFITLGSDNALW----FTENQNNAIGRI 167
Query: 584 -STGVTEE--DDALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADE 640
+G E S P G D ++FV + E +
Sbjct: 168 TESGDITEFKIPTPASGPVGI--TKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNA 225
Query: 641 PPLPPGWEIRYTEDGTRYFVDHNT 664
P I +F +
Sbjct: 226 RP----HAITAGAGIDLWFTEWGA 245
Score = 29.2 bits (66), Expect = 6.3
Identities = 12/81 (14%), Positives = 22/81 (27%), Gaps = 14/81 (17%)
Query: 605 VQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDH-- 662
V G+V+ HK + + E D + + DG +F ++
Sbjct: 22 VSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKV----MCLTISSDGEVWFTENAA 77
Query: 663 --------NTRSTTFEDPRPG 675
+ P P
Sbjct: 78 NKIGRITKKGIIKEYTLPNPD 98
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein,
stationary phase, phosph mononucleotidase, divalent
metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Length = 254
Score = 35.9 bits (84), Expect = 0.044
Identities = 15/76 (19%), Positives = 19/76 (25%), Gaps = 31/76 (40%)
Query: 357 RAAQSNGLP---------PALPPEEPLPPGWEI-RQDTYGRRYYVDHNTRSSSWERPQPL 406
R L P LP + G + R G R+ D
Sbjct: 144 RGLSREPLRTGRILNVNVPDLPLAQV--KGIRVTRC---GSRHPADK------------- 185
Query: 407 PPGWELRRDPRGRVYY 422
+ DPRG Y
Sbjct: 186 ---VIPQEDPRGNTLY 198
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.72.1.1
Length = 50
Score = 32.3 bits (73), Expect = 0.049
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 593 ALGSLPSGWERRVQPDGRVYFVNHKNRTTQWEDP 626
W + +G Y+ + + +QWE P
Sbjct: 1 GSSGSSGRWVEGITSEGYHYYYDLISGASQWEKP 34
Score = 28.1 bits (62), Expect = 1.5
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 410 WELRRDPRGRVYYVDHNTRSTTWQRP 435
W G YY D + ++ W++P
Sbjct: 9 WVEGITSEGYHYYYDLISGASQWEKP 34
Score = 28.1 bits (62), Expect = 1.5
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 515 WELRRDPRGRVYYVDHNTRSTTWQRP 540
W G YY D + ++ W++P
Sbjct: 9 WVEGITSEGYHYYYDLISGASQWEKP 34
Score = 28.1 bits (62), Expect = 1.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 386 GRRYYVDHNTRSSSWERPQ 404
G YY D + +S WE+P+
Sbjct: 17 GYHYYYDLISGASQWEKPE 35
Score = 28.1 bits (62), Expect = 1.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 491 GRRYYVDHNTRSSSWERPQ 509
G YY D + +S WE+P+
Sbjct: 17 GYHYYYDLISGASQWEKPE 35
>2dk7_A Transcription elongation regulator 1; structural genomics, WW
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 73
Score = 32.8 bits (74), Expect = 0.062
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 348 GASGGTTSPRAAQSNGLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPL 406
G+SG + + + +P W + R ++ + TR S W+RP L
Sbjct: 1 GSSGSSGKAKPVATAPIPGT---------PWCVVWTGDERVFFYNPTTRLSMWDRPDDL 50
Score = 32.8 bits (74), Expect = 0.063
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 599 SGWERRVQPDGRVYFVNHKNRTTQWEDP 626
+ W D RV+F N R + W+ P
Sbjct: 20 TPWCVVWTGDERVFFYNPTTRLSMWDRP 47
Score = 30.5 bits (68), Expect = 0.40
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 395 TRSSSWERP---QPLP-PGWELRRDPRGRVYYVDHNTRSTTWQRP 435
+ SS +P P+P W + RV++ + TR + W RP
Sbjct: 3 SGSSGKAKPVATAPIPGTPWCVVWTGDERVFFYNPTTRLSMWDRP 47
Score = 30.5 bits (68), Expect = 0.40
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 500 TRSSSWERP---QPLP-PGWELRRDPRGRVYYVDHNTRSTTWQRP 540
+ SS +P P+P W + RV++ + TR + W RP
Sbjct: 3 SGSSGKAKPVATAPIPGTPWCVVWTGDERVFFYNPTTRLSMWDRP 47
Score = 30.1 bits (67), Expect = 0.62
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 490 YGRRYYVDHNTRSSSWERPQPL 511
R ++ + TR S W+RP L
Sbjct: 29 DERVFFYNPTTRLSMWDRPDDL 50
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 35.7 bits (81), Expect = 0.079
Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 150 PNPYIELYV-----DYKNPKTTRVVKNTYQPKWNEE--FTVLVSPYSIILFRLLDHRTFR 202
+P + + + D + +T + N + P+W+ E F V V +++ F + D+ +
Sbjct: 520 VDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSS 579
Query: 203 RDCTIGE 209
++ IG+
Sbjct: 580 KNDFIGQ 586
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 33.8 bits (77), Expect = 0.12
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 151 NPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI-ILFRLLDHRTFRRDCTIGE 209
N Y+ L V N ++T + QP W ++F ++ + + + + + D +G
Sbjct: 33 NTYVTLKVQ--NVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWN-KGLIWDTMVGT 89
Query: 210 KRLNIYGVLAH 220
+ + +
Sbjct: 90 VWIPLRTIRQS 100
Score = 31.1 bits (70), Expect = 0.87
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 118 NSKQTTRVVKNTYQPKWNEEFT--VGGQGGGLL 148
N + TT V+ + QP W ++F + GL
Sbjct: 42 NVESTTIAVRGS-QPSWEQDFMFEINRLDLGLT 73
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function;
1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A
1j9k_A* 1j9l_A*
Length = 247
Score = 34.4 bits (80), Expect = 0.14
Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 28/73 (38%)
Query: 357 RAAQSNGLPPAL------PPEEPLPPGWEI-RQDTYGRRYYVDHNTRSSSWERPQPLPPG 409
+ + L P P E GW RQ RR + D+
Sbjct: 148 KEFDFSLLDPFTMLNINVPAGEI--KGWRFTRQ---SRRRWNDY---------------- 186
Query: 410 WELRRDPRGRVYY 422
+E R P G YY
Sbjct: 187 FEERVSPFGEKYY 199
Score = 28.6 bits (65), Expect = 9.4
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 16/37 (43%)
Query: 491 GRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYY 527
RR + D+ +E R P G YY
Sbjct: 179 SRRRWNDY----------------FEERVSPFGEKYY 199
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP
hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A
2e69_A 2e6e_A 2e6g_A 2e6h_A
Length = 244
Score = 33.2 bits (77), Expect = 0.27
Identities = 11/51 (21%), Positives = 13/51 (25%), Gaps = 20/51 (39%)
Query: 373 PLPPGWEI-RQDTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYY 422
P G+ RQ R Y DP GR +Y
Sbjct: 167 LRPKGFLWTRQ---SVRAYEGV----------------VIPGEDPMGRPFY 198
Score = 28.6 bits (65), Expect = 9.2
Identities = 7/37 (18%), Positives = 8/37 (21%), Gaps = 16/37 (43%)
Query: 491 GRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVYY 527
R Y DP GR +Y
Sbjct: 178 SVRAYEGV----------------VIPGEDPMGRPFY 198
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins,
electron transfer complex, TTQ, electron transport,
oxidoreductase, periplasm, transport, metal- binding;
HET: TRQ; 2.50A {Paracoccus versutus}
Length = 426
Score = 33.9 bits (76), Expect = 0.31
Identities = 46/365 (12%), Positives = 88/365 (24%), Gaps = 54/365 (14%)
Query: 328 TSSSSSSSAALPPIDLAQEAGASGGTTSPRAAQSNGLPPALPPEEPLPPGWEIRQDTYGR 387
++ + + P A+ A A + + AL E P R
Sbjct: 26 LGAAQAQTEPAEPEAPAETAAADAAGQTEGQRGAAEAAAALAAGEADEPVILEAPAPDAR 85
Query: 388 RYYV-DHNTRSSSWERPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHW 446
R Y+ D ++ + + +D +T
Sbjct: 86 RVYIQDPAHFAAI------------------TQQFVIDGSTGRILGMTDG---------- 117
Query: 447 QGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTG-----VTEEDADTY--GRRYYVDHN 499
G H V+ F +S+ + G V D T+ +
Sbjct: 118 -GFLPHPVAAEDGSFFA------QASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDA 170
Query: 500 TRSSSWERPQPLPPGWELRR------DPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQG 553
R + + P V VD ++ + F
Sbjct: 171 PRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPT 230
Query: 554 ERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQPDGRVYF 613
GS + G +++ V + + SL SG G+++
Sbjct: 231 VFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQ 290
Query: 614 VNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWE-IRYTEDGTR-YFVDHNTRSTTFED 671
+ + P + + + P GW+ Y R Y + +
Sbjct: 291 ADLTAEGATFRAPIEA---LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKA 347
Query: 672 PRPGV 676
V
Sbjct: 348 ASRFV 352
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 33.4 bits (76), Expect = 0.37
Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 3/86 (3%)
Query: 297 CPPPPHHNHSSPSISSSQQQHTQVSNGAVQCTSSSSSSSAALPPIDLAQEAGASGGTTSP 356
C + ++ + S+ A ++ A+ + +
Sbjct: 336 CCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQ---KMQQQQAAYPPQG 392
Query: 357 RAAQSNGLPPALPPEEPLPPGWEIRQ 382
A G PP P + PP Q
Sbjct: 393 YAPPPQGYPPQGYPPQGYPPQGYPPQ 418
Score = 30.7 bits (69), Expect = 2.6
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 4/104 (3%)
Query: 305 HSSPSISSSQQQHTQVSNGAVQCTSSSSSSSAALPPIDLAQEAGASGGTTSPRAAQSNGL 364
+ T++ G + S+ ++ + + Q+ P+
Sbjct: 339 FDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPP-- 396
Query: 365 PPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPP 408
P PP+ P G+ Y + Y + P PP
Sbjct: 397 PQGYPPQGYPPQGYP--PQGYPPQGYPPPPQGAPPQGAPPAAPP 438
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein
binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Length = 126
Score = 31.6 bits (71), Expect = 0.39
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 151 NPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDH-RTFRRDC 205
P+ + + KT K T P+W F + +I L+ +
Sbjct: 28 QPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAAEEPVSEV 87
Query: 206 TIG 208
T+G
Sbjct: 88 TVG 90
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 33.6 bits (76), Expect = 0.39
Identities = 28/155 (18%), Positives = 37/155 (23%), Gaps = 7/155 (4%)
Query: 289 PPGSENTACPPPPHHNHSSPSISSSQQQHTQVS---NGAVQCTSSSSSSSAALPPIDLAQ 345
A P +P+ QQ Q + N +A + P Q
Sbjct: 45 MGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQ 104
Query: 346 EAGASGGTTSPRAAQSNGLPPALPPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQP 405
P AA + G P A + P D + P P
Sbjct: 105 MGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLP----PPP 160
Query: 406 LPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERL 440
L E P RST P + L
Sbjct: 161 LVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSL 195
Score = 30.2 bits (67), Expect = 3.9
Identities = 11/89 (12%), Positives = 17/89 (19%), Gaps = 3/89 (3%)
Query: 289 PPGSENTACPPPPHHNHSSPSISSSQQQHTQVSNGAVQCTSSSSSSSAALPPIDLAQEAG 348
G T P P + + G + S Q
Sbjct: 15 QYGQNATPLQQPAQFM---PPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQ 71
Query: 349 ASGGTTSPRAAQSNGLPPALPPEEPLPPG 377
T+ P + P + P
Sbjct: 72 QIDQATTSMNDMHLHNVPLVDPNAYMQPQ 100
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D
domain swapping, heme binding, MI processing, heme,
iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Length = 79
Score = 30.1 bits (67), Expect = 0.62
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 369 PPEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPG 409
PP EPLP GW + G Y+ +R +W RP L G
Sbjct: 24 PPTEPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFLGTG 64
Score = 27.4 bits (60), Expect = 6.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 404 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 435
+PLP GW + G Y+ +R TW RP
Sbjct: 27 EPLPDGWIMTFHNSGVPVYLHRESRVVTWSRP 58
Score = 27.4 bits (60), Expect = 6.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 509 QPLPPGWELRRDPRGRVYYVDHNTRSTTWQRP 540
+PLP GW + G Y+ +R TW RP
Sbjct: 27 EPLPDGWIMTFHNSGVPVYLHRESRVVTWSRP 58
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase,
mixed alpha/ protein, N-terminal rossmann-fold like;
2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Length = 280
Score = 32.1 bits (74), Expect = 0.69
Identities = 12/77 (15%), Positives = 17/77 (22%), Gaps = 33/77 (42%)
Query: 357 RAAQSNGLP----------PALPPEEPLPPGWEI-RQDTYGRRYYVDHNTRSSSWERPQP 405
NG+P P ++ + + Y
Sbjct: 154 SYVLKNGMPQGVDVISVNFPRRLGRGV---RAKLVKA---AKLRYAQQ------------ 195
Query: 406 LPPGWELRRDPRGRVYY 422
R DPRG YY
Sbjct: 196 ----VVERVDPRGVRYY 208
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 32.4 bits (73), Expect = 0.76
Identities = 24/152 (15%), Positives = 39/152 (25%), Gaps = 18/152 (11%)
Query: 220 HYNGKCEHLEITLDLMNDSRVSPPLMSVEMPPLLRNNTPHAASPLAQANTDVVVSHRSVL 279
H++ + ++ +N S SP P L + Q ++ +
Sbjct: 5 HHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPI-------- 56
Query: 280 NEGIRARSRPPGSENTACPPPPHHNHSSPSISSSQQQHTQVSNG-AVQCTSSSSSSSAAL 338
S PP SSP S T + G + SS +
Sbjct: 57 ---------STLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVS 107
Query: 339 PPIDLAQEAGASGGTTSPRAAQSNGLPPALPP 370
D+ G +G P N
Sbjct: 108 SSEDIKPPLGLNGVLKVPAHPSGNMASFTKHI 139
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane,
phosphoprotein, SH3-binding, signaling protein; 3.00A
{Rattus norvegicus}
Length = 483
Score = 32.3 bits (72), Expect = 0.83
Identities = 20/136 (14%), Positives = 28/136 (20%), Gaps = 20/136 (14%)
Query: 149 KPNPYIELYVDYKNPKTTRVVKNTYQPK---WNEEFTVLVSPYSIILFRLL-----DHRT 200
K Y EL +D T + W E F P L L R
Sbjct: 26 KKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRK 85
Query: 201 FRRDCTIGEKRLNI------------YGVLAHYNGKCEHLEITLDLMNDSRVSPPLMSVE 248
+ +G + + Y V + S
Sbjct: 86 KDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGG 145
Query: 249 MPPLLRNNTPHAASPL 264
P + S L
Sbjct: 146 CPAVRLKARYQTMSIL 161
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 31.5 bits (72), Expect = 1.1
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 25/71 (35%)
Query: 180 EFTVLVS--PYSI---ILFRLLDHRTFRRDCTI--------------GEKRLNIYGVL-- 218
F V+ PY I +F+LL HR F R + G+K +Y L
Sbjct: 93 FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDK---LYCRLSI 149
Query: 219 -AHYNGKCEHL 228
+ +HL
Sbjct: 150 NTQLLARVDHL 160
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone
cofactor, oxidoreductase-electron transport complex;
HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB:
2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D*
3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D*
3svw_D* 3pxw_D* 3sle_D* 1mg2_A* 1mg3_A* 2mta_H* ...
Length = 386
Score = 31.4 bits (70), Expect = 1.6
Identities = 30/250 (12%), Positives = 58/250 (23%), Gaps = 43/250 (17%)
Query: 466 HGVGVSSSSAVSFSTGVTEEDADTY-------------------GRRYYVDHNTRSSSWE 506
V V+ + + T D + G S+ +
Sbjct: 45 RRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHA----STVFS 100
Query: 507 RPQPLPPGWELRRDPRGRVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRF 566
R R + V D T T + + + G +
Sbjct: 101 RIA--------RGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG--KT 150
Query: 567 LY-----PQHGVGVSSSSAVSFSTGVTEEDDALGSLPSGWERRVQ--PDGR-VYFVNHKN 618
L P VGV +F + + D P+ + DG
Sbjct: 151 LLFYQFSPAPAVGVVDLEGKAF-KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTE 209
Query: 619 RTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRY-TEDGTRYFVDHNTRSTTFEDPRPGVP 677
T + E + + + T G + +D ++ F +
Sbjct: 210 GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT 269
Query: 678 KDQKGAYGVP 687
+ ++ P
Sbjct: 270 EAERADGWRP 279
>2inc_B Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix
bundle, carboxylate bridge, metalloenzyme,
oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri}
SCOP: a.25.1.2 PDB: 3n20_B* 1t0r_B 1t0s_B 1t0q_B* 3n1x_B
3n1y_B* 3n1z_B* 2rdb_B* 3rn9_B* 3rna_B 3rnb_B 3rnc_B
3rne_B 3rnf_B* 3rng_B 2ind_B*
Length = 322
Score = 31.2 bits (70), Expect = 1.7
Identities = 21/134 (15%), Positives = 36/134 (26%), Gaps = 15/134 (11%)
Query: 370 PEEPLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVY--YVDHNT 427
PE P + T+ ++Y D + W RDP VY Y
Sbjct: 35 PERPWELDSNLPMQTWYKKYCFDSPLKHDDWNA----------FRDPDQLVYRTYNLLQD 84
Query: 428 ---RSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYPQHGVGVSSSSAVSFSTGVTE 484
H + E +++ Y H + + S + T
Sbjct: 85 GQESYVQGLFDQLNDRGHDQMLTREWVETLARFYTPARYLFHALQMGSVYIHQIAPASTI 144
Query: 485 EDADTYGRRYYVDH 498
+ TY ++
Sbjct: 145 TNCATYETADHLRW 158
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 31.1 bits (70), Expect = 2.0
Identities = 13/74 (17%), Positives = 19/74 (25%), Gaps = 6/74 (8%)
Query: 605 VQPDGRVYFVNHKNRTTQWEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNT 664
PDG ++ NH+ P Q A G + +T +G N
Sbjct: 39 SAPDGTIFVTNHEVGEIVSITPDGNQQIH----ATVEGKVSG--LAFTSNGDLVATGWNA 92
Query: 665 RSTTFEDPRPGVPK 678
S
Sbjct: 93 DSIPVVSLVKSDGT 106
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET:
SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A*
3ssm_A*
Length = 419
Score = 30.7 bits (68), Expect = 2.7
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 834 LNKKLVMKDIESIDPEFYNSLVWIRDNNIDECGLELYLSVDFE 876
+ V ++I + Y+++ ++ DE G+ ++ DFE
Sbjct: 368 RSPGYVDRNIVGL--HVYHNVAFVEKGRNDEGGIPTWIPRDFE 408
>2wsc_E PSAE, PSI-E A, photosystem I reaction center subunit IV A,
chloroplastic; photosynthesis, electron transfer,
membrane proteins, large complexes; HET: CL1 PQN BCR LMU
LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_E*
2wsf_E* 2o01_E* 3lw5_E*
Length = 143
Score = 28.4 bits (62), Expect = 6.2
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 324 AVQCTSSSSSSSAALPP-------IDLAQEAGASGGTTSPRAAQSNGLPPALPPEEPLPP 376
+V SSS SS + LP + A E A ++S + + P +P PP
Sbjct: 18 SVAGASSSRSSVSFLPMRNAGSRLVVRAAEDPAPASSSSKDSPAAAAAPDGATATKPKPP 77
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 29.3 bits (66), Expect = 6.5
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 21/114 (18%)
Query: 324 AVQCTSSSSSSSAALPPIDLAQEAGASGGTTSP-------RAAQSNGLPPALPPEE---- 372
AV+ +++ +S+ D+ AG P +GL ++
Sbjct: 143 AVRLSAAFASNEHYSFSQDMVTLAGTIDPLDLPVFRDTLRDLLAEHGLSRSVVDCWNHVE 202
Query: 373 -----PLPPGWEIRQDTYGRRYYVDHNTRSSSWERPQPLPPGWELRRDPRGRVY 421
+P ++I DT+ R+ +R W D V
Sbjct: 203 QLNLVFVPKAFQIAGDTFDDRF---VFVGPCFDDRR--FLGEWTRPADDLPVVL 251
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 29.2 bits (66), Expect = 7.3
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 179 EEFTVLVS--PYSI---ILFRLLDHRTFRRDCTI 207
+F V + PY I ++F+L+ HR + +
Sbjct: 105 PKFDVCTANIPYKISSPLIFKLISHRPLFKCAVL 138
>1c6v_X Protein (SIU89134); DNA integration, DNA binding protein; 3.00A
{Simian immunodeficiency virus} SCOP: b.34.7.1
Length = 81
Score = 27.3 bits (60), Expect = 7.4
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 419 RVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYP 464
RVYY + R W+ P E L W+GE A ++ G+ + P
Sbjct: 12 RVYYREG--RDQLWKGP-GELL-----WKGEGAVLLKVGTDIKVVP 49
Score = 27.3 bits (60), Expect = 7.4
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 524 RVYYVDHNTRSTTWQRPNSERLQHFKHWQGERAHVVSQGSQRFLYP 569
RVYY + R W+ P E L W+GE A ++ G+ + P
Sbjct: 12 RVYYREG--RDQLWKGP-GELL-----WKGEGAVLLKVGTDIKVVP 49
>4ew5_A CIGR protein; inner membrane protein, structural genomics,
APC101781, PSI- midwest center for structural genomics,
MCSG; 1.87A {Salmonella enterica subsp}
Length = 102
Score = 27.7 bits (61), Expect = 7.7
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Query: 303 HNHSSPSISSSQQQHTQVSNGAVQCTSSSSSSSAALPPIDLAQEAGASGGTTSPRAAQSN 362
N P S + AV + S LPP + G P
Sbjct: 3 KNGGKPDHVESDISYAVARQLAVNLGLTGYQS---LPP---GIAKNLARGKPLPPGIAKK 56
Query: 363 GLPPALPPEEPLPPGWEIRQ 382
+P ++ + P PG+E +
Sbjct: 57 TVPASMLGQLPYYPGYEWKI 76
>3ec4_A Putative acetyltransferase from the GNAT family; YP_497011.1, joint
center for structural genomics; 1.80A {Novosphingobium
aromaticivorans dsm 12ORGANISM_TAXID}
Length = 228
Score = 28.6 bits (64), Expect = 7.9
Identities = 8/57 (14%), Positives = 13/57 (22%)
Query: 623 WEDPRTQGQEIGQIGADEPPLPPGWEIRYTEDGTRYFVDHNTRSTTFEDPRPGVPKD 679
+ EI + + PPG + + D S D
Sbjct: 52 ASLLQGDADEIWLVEPEPVAPPPGTRVIRVAPLLQMIADGPVPSFDDPGIVALGETD 108
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription;
2.98A {Saccharomyces cerevisiae}
Length = 339
Score = 29.0 bits (64), Expect = 8.7
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 608 DGRVYFVNHKNRTTQWEDPRTQGQEIGQIGAD-EPPLPPGWEIRYTEDGTRYFVDHNT 664
+G ++ V+ +N W Q + +I I DG Y+ + +
Sbjct: 19 EGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ 76
>3cla_A Type III chloramphenicol acetyltransferase; transferase
(acyltransferase); HET: CLM; 1.75A {Escherichia coli}
SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A
1qca_A*
Length = 213
Score = 28.5 bits (63), Expect = 9.3
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 98 MQEIDVEDWQRNAIYRHYTRNSK 120
+ DV++W R + Y
Sbjct: 3 YTKFDVKNWVRREHFEFYRHRLP 25
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 29.2 bits (64), Expect = 9.8
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 142 GQGGGLLKPNPYIELYV-----DYKNPKTTRVVK-NTYQPKWNEE---FTVLVSPY-SII 191
GQ K Y+E+ + D + TR + N++ P W+EE F +V P + +
Sbjct: 734 GQFLSDRKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASL 793
Query: 192 LFRLLDHRT 200
+
Sbjct: 794 RIAAFEEGG 802
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.428
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,382,272
Number of extensions: 1026534
Number of successful extensions: 2944
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2810
Number of HSP's successfully gapped: 437
Length of query: 994
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 891
Effective length of database: 3,825,930
Effective search space: 3408903630
Effective search space used: 3408903630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.8 bits)