BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16329
(215 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VK68|PITH1_DROME PITH domain-containing protein CG6153 OS=Drosophila melanogaster
GN=CG6153 PE=2 SV=1
Length = 211
Score = 167 bits (422), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 80/137 (58%), Positives = 100/137 (72%), Gaps = 5/137 (3%)
Query: 78 AHNHGG--HCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRL 135
+H+HGG H + DH+ E+GI+YSLY ID +NVECLNE DG GK++FKP+E R
Sbjct: 6 SHDHGGCSHEASDVDHA---LEMGIEYSLYTKIDLDNVECLNEETDGQGKSVFKPYEKRQ 62
Query: 136 NKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNAS 195
+ K+VESD D ELL NIPFT NIKLKG+ + G + DSHPN +K+FKNRP MTFDD A
Sbjct: 63 DLSKYVESDADEELLFNIPFTGNIKLKGIIISGANDDSHPNMVKIFKNRPRMTFDDARAK 122
Query: 196 PDQEFELNQDSDASIEY 212
PDQEF+L +D+ IEY
Sbjct: 123 PDQEFQLTRDARGEIEY 139
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 43/58 (74%)
Query: 10 RAAKFSNVYHLTCYFPTNFGSDNTCLYYLGFRGESSPLHRHGVTICNYETTPSLADHK 67
+ FS+V+HL+ YFP+NFG D T +YY+G RGE + H HGVTICNYE+ + ADHK
Sbjct: 142 KVVTFSSVHHLSLYFPSNFGEDITRIYYIGLRGEFTEAHYHGVTICNYESRANAADHK 199
>sp|Q29L80|PITH1_DROPS PITH domain-containing protein GA19395 OS=Drosophila pseudoobscura
pseudoobscura GN=GA19395 PE=3 SV=1
Length = 211
Score = 166 bits (421), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 100/139 (71%), Gaps = 9/139 (6%)
Query: 78 AHNHGGHCCGEE----DHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWED 133
+H+HGG CG E DH+ E+GI+YSLY ID EN+ECLNE +GSGKT+FKP+E
Sbjct: 6 SHDHGG--CGHEATDVDHA---LEMGIEYSLYTKIDAENLECLNEETEGSGKTVFKPYES 60
Query: 134 RLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVN 193
R + KFV+SD D ELL NIPFT NIKLKG+ + G + DSHPN++K+FKNRP MTFDD
Sbjct: 61 RQDMSKFVQSDADEELLFNIPFTGNIKLKGIIICGANDDSHPNKVKIFKNRPKMTFDDAK 120
Query: 194 ASPDQEFELNQDSDASIEY 212
DQEFEL +D IEY
Sbjct: 121 VKVDQEFELTRDPRGEIEY 139
Score = 80.5 bits (197), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 42/58 (72%)
Query: 10 RAAKFSNVYHLTCYFPTNFGSDNTCLYYLGFRGESSPLHRHGVTICNYETTPSLADHK 67
+ FS+V+HLT YFP+NFG D T +YY+G RGE S H HGVTICNYE + ADHK
Sbjct: 142 KVVNFSSVHHLTLYFPSNFGDDKTRIYYIGLRGEFSEAHYHGVTICNYEARANAADHK 199
>sp|Q6DJI5|PITH1_XENLA PITH domain-containing protein 1 OS=Xenopus laevis GN=pithd1 PE=2
SV=1
Length = 209
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 98/136 (72%), Gaps = 1/136 (0%)
Query: 78 AHNHGGHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNK 137
H+HGG C E + S D E G++Y L++ ID + ++CLNE+ +GSG+++F+ WE+R ++
Sbjct: 4 GHSHGGGCSCESEPS-DGPERGLEYGLFRKIDLDKLQCLNESREGSGRSVFRAWEERNDR 62
Query: 138 EKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPD 197
+FVESD D ELL NIPFT N+KLKG+ LIG DSD+HP ++LFKN P M+FDD D
Sbjct: 63 TRFVESDDDEELLFNIPFTGNVKLKGIVLIGEDSDTHPAELRLFKNVPHMSFDDTGREAD 122
Query: 198 QEFELNQDSDASIEYP 213
Q F LN D + ++EYP
Sbjct: 123 QTFSLNIDVNGNLEYP 138
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 44/62 (70%)
Query: 10 RAAKFSNVYHLTCYFPTNFGSDNTCLYYLGFRGESSPLHRHGVTICNYETTPSLADHKVD 69
+ A+FSNV HL+ + NFG++NT +YY+G RGE + HRH VTICNYE + ADHKV
Sbjct: 140 KIARFSNVSHLSIHISKNFGAENTKIYYIGLRGEWTEAHRHEVTICNYEAAANPADHKVS 199
Query: 70 NM 71
+
Sbjct: 200 QI 201
>sp|Q6NYX8|PITH1_DANRE PITH domain-containing protein 1 OS=Danio rerio GN=pithd1 PE=2 SV=1
Length = 210
Score = 150 bits (378), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 86/118 (72%)
Query: 96 TELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPF 155
E G++Y LY+ ID E ++CLNE+ DG GK +FKPW+ R ++ KFVESD D ELL NIPF
Sbjct: 22 AERGVEYELYRRIDIEKLQCLNESRDGDGKLVFKPWDQRTDRNKFVESDADEELLFNIPF 81
Query: 156 TSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPDQEFELNQDSDASIEYP 213
T ++KLKG+ + G D +SHP I+LFKN P M+FDD + P+Q F LN+D A +EYP
Sbjct: 82 TGSVKLKGIIISGEDDESHPAEIRLFKNIPQMSFDDTSREPEQAFRLNRDPRAELEYP 139
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 46/62 (74%)
Query: 10 RAAKFSNVYHLTCYFPTNFGSDNTCLYYLGFRGESSPLHRHGVTICNYETTPSLADHKVD 69
+ A+FSNV HL+ + NFG+++T +YY+G RGE + HRH VTICNYE + ADHKV+
Sbjct: 141 KIARFSNVEHLSIHVSRNFGAESTRVYYIGLRGEYTEAHRHEVTICNYEAAANPADHKVE 200
Query: 70 NM 71
++
Sbjct: 201 SI 202
>sp|Q9GZP4|PITH1_HUMAN PITH domain-containing protein 1 OS=Homo sapiens GN=PITHD1 PE=1
SV=1
Length = 211
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 89/129 (68%), Gaps = 2/129 (1%)
Query: 84 HCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVES 143
C E + + + G+ Y LY ID E ++CLNE+ +GSG+ +FKPWE+R ++ KFVES
Sbjct: 13 RCAAEREEPPE--QRGLAYGLYLRIDLERLQCLNESREGSGRGVFKPWEERTDRSKFVES 70
Query: 144 DVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPDQEFELN 203
D D ELL NIPFT N+KLKG+ ++G D DSHP+ ++L+KN P M+FDD PDQ F LN
Sbjct: 71 DADEELLFNIPFTGNVKLKGIIIMGEDDDSHPSEMRLYKNIPQMSFDDTEREPDQTFSLN 130
Query: 204 QDSDASIEY 212
+D +EY
Sbjct: 131 RDLTGELEY 139
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 44/59 (74%)
Query: 10 RAAKFSNVYHLTCYFPTNFGSDNTCLYYLGFRGESSPLHRHGVTICNYETTPSLADHKV 68
+ ++FSNVYHL+ + NFG+D T ++Y+G RGE + L RH VTICNYE + + ADH+V
Sbjct: 142 KISRFSNVYHLSIHISKNFGADTTKVFYIGLRGEWTELRRHEVTICNYEASANPADHRV 200
>sp|Q8BWR2|PITH1_MOUSE PITH domain-containing protein 1 OS=Mus musculus GN=Pithd1 PE=2
SV=1
Length = 211
Score = 144 bits (362), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 89/129 (68%), Gaps = 2/129 (1%)
Query: 84 HCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVES 143
C E + + + G+ Y LY ID E ++CLNE+ +GSG+ +FKPWE+R ++ KFVES
Sbjct: 13 RCAAEREEPPE--QRGLAYGLYLRIDLERLQCLNESREGSGRGVFKPWEERTDRSKFVES 70
Query: 144 DVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPDQEFELN 203
D D ELL NIPFT N+KLKG+ ++G D DSHP+ ++L+KN P M+FDD P+Q F LN
Sbjct: 71 DADEELLFNIPFTGNVKLKGVIIMGEDDDSHPSEMRLYKNIPQMSFDDTEREPEQTFSLN 130
Query: 204 QDSDASIEY 212
+D +EY
Sbjct: 131 RDITGELEY 139
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 44/59 (74%)
Query: 10 RAAKFSNVYHLTCYFPTNFGSDNTCLYYLGFRGESSPLHRHGVTICNYETTPSLADHKV 68
+ ++FSNVYHL+ + NFG+D T ++Y+G RGE + L RH VTICNYE + + ADH+V
Sbjct: 142 KISRFSNVYHLSIHISKNFGADTTKIFYIGLRGEWTELRRHEVTICNYEASANPADHRV 200
>sp|Q95ZI6|PITH1_CAEEL PITH domain-containing protein ZK353.9 OS=Caenorhabditis elegans
GN=ZK353.9 PE=3 SV=1
Length = 208
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 88/139 (63%), Gaps = 5/139 (3%)
Query: 78 AHNHGGHCCGEE--DHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRL 135
+H H +C E + DD +Y + +ID E V LNE+VDG+GK +FK E R
Sbjct: 3 SHGHSHNCAAEHIPEVPGDDV---YRYDMVSYIDMEKVTTLNESVDGAGKKVFKVMEKRD 59
Query: 136 NKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNAS 195
++ ++VESD D ELL NIPFT +++L GL +IG + SHP +I+LFK+R M+FDD +
Sbjct: 60 DRLEYVESDCDHELLFNIPFTGHVRLTGLSIIGDEDGSHPAKIRLFKDREAMSFDDCSIE 119
Query: 196 PDQEFELNQDSDASIEYPI 214
DQE +L QD ++YP+
Sbjct: 120 ADQEIDLKQDPQGLVDYPL 138
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 9 FRAAKFSNVYHLTCYFPTNFGSDNTCLYYLGFRGESSPLHRHGVTICNYETTPSLADHK 67
+A+KF N+++L+ NFG D T +YY+G RGE R + I YE+ L DHK
Sbjct: 138 LKASKFGNIHNLSILVDANFGEDETKIYYIGLRGEFQHEFRQRIAIATYESRAQLKDHK 196
>sp|Q54Z24|PITH1_DICDI PITH domain-containing protein 1 OS=Dictyostelium discoideum
GN=DDB_G0277951 PE=3 SV=1
Length = 202
Score = 93.6 bits (231), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 84/131 (64%), Gaps = 2/131 (1%)
Query: 83 GHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVE 142
H C + HSH + GI+YSL +++DT + CLNE V GS + IFK WEDR + + FVE
Sbjct: 2 AHQCNDSSHSHG-VDDGIEYSLNRYLDTGTITCLNEKVKGSVRHIFKSWEDRHDLKHFVE 60
Query: 143 SDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNA-SPDQEFE 201
S D EL+INIPF + ++K + +IGGD S PN++K + N + F ++N+ + QE+
Sbjct: 61 SCDDEELIINIPFGAVTQIKSIIIIGGDGGSSPNKMKAYINNSNIDFGNINSFACTQEWN 120
Query: 202 LNQDSDASIEY 212
L++D + I Y
Sbjct: 121 LHEDFEGQIGY 131
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 10 RAAKFSNVYHLTCYFPTNFGSDNTCLYYLGFRGESSPLHRHGVTICNYETTPSLADHKVD 69
+ KF+N+ HLT YFP+NFGS T +Y++ +G + R V YE+ P L DHK D
Sbjct: 134 KPTKFNNINHLTLYFPSNFGSPTTKIYFIALKGVYTSAKREIVNTV-YESKPQLQDHKSD 192
Query: 70 NMN 72
N
Sbjct: 193 IFN 195
>sp|Q9P7A1|PITH1_SCHPO PITH domain-containing protein P35G2.02 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP35G2.02 PE=3 SV=1
Length = 207
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 82 GGHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFV 141
G H C + H E G +LY I E++ LNE V SGK +FKPW+ R + V
Sbjct: 3 GPHHCSADCDEHP-FESGPNDTLYSCIRKESIVTLNEAVPDSGKLVFKPWDLRYDDTDIV 61
Query: 142 ESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFD---DVNASPDQ 198
ESD D +LL +PF LK + + +++ P+ LF NR + FD DV A+
Sbjct: 62 ESDADDQLLFQVPFAGAATLKSILVRIFPNETAPHSFSLFPNRTDLDFDTIGDVQATETF 121
Query: 199 EFELNQDSDASIEYPI 214
EF L + E+P+
Sbjct: 122 EFPLTFEGSHIFEFPV 137
>sp|Q9USR1|TXL1_SCHPO Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=txl1 PE=4 SV=1
Length = 290
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 103 SLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIKLK 162
SL I+ +ECLN+ D K+ F N F+ESDVD +L+I IPF +K+
Sbjct: 128 SLQGCIENPQLECLNQQDDHDLKSAFNS-----NPSSFLESDVDEQLMIYIPFLEVVKVH 182
Query: 163 GLRL--IGGDSDSHPNRIKLFKNRP-GMTFDDVNA-SPDQEFE 201
+ + + G++ S P IKL+ N+P ++F+D + +P Q E
Sbjct: 183 SIAITPVKGETSSAPKTIKLYINQPNNLSFEDAESFTPTQVIE 225
>sp|Q920J4|TXNL1_RAT Thioredoxin-like protein 1 OS=Rattus norvegicus GN=Txnl1 PE=1 SV=3
Length = 289
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 11/118 (9%)
Query: 92 SHDDTELGIQY-SLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKE-KFVESDVDSEL 149
S++DT++ Y L I+ ECLNE+ D G +++ L K+ F+ESD D +L
Sbjct: 113 SNEDTDIPKGYMDLMPFINKAGCECLNES-DEHG------FDNCLRKDLSFLESDCDEQL 165
Query: 150 LINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRP-GMTFDDVNAS-PDQEFELNQD 205
LI + F +KL ++ G D+ P +K+F N P M F++ S P Q EL +D
Sbjct: 166 LITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTED 223
>sp|O43396|TXNL1_HUMAN Thioredoxin-like protein 1 OS=Homo sapiens GN=TXNL1 PE=1 SV=3
Length = 289
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 11/118 (9%)
Query: 92 SHDDTELGIQY-SLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEK-FVESDVDSEL 149
S++DT++ Y L I+ ECLNE+ D G +++ L K+ F+ESD D +L
Sbjct: 113 SNEDTDIPKGYMDLMPFINKAGCECLNES-DEHG------FDNCLRKDTTFLESDCDEQL 165
Query: 150 LINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRP-GMTFDDVNAS-PDQEFELNQD 205
LI + F +KL ++ G D+ P +K+F N P M F++ S P Q EL +D
Sbjct: 166 LITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTED 223
>sp|Q8CDN6|TXNL1_MOUSE Thioredoxin-like protein 1 OS=Mus musculus GN=Txnl1 PE=1 SV=3
Length = 289
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 11/118 (9%)
Query: 92 SHDDTELGIQY-SLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKE-KFVESDVDSEL 149
S++D ++ Y L I+ ECLNE+ D G +++ L K+ F+ESD D +L
Sbjct: 113 SNEDADIPKGYMDLMPFINKAGCECLNES-DEHG------FDNCLRKDMSFLESDCDEQL 165
Query: 150 LINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRP-GMTFDDVNAS-PDQEFELNQD 205
LI + F +KL ++ G D+ P +K+F N P M F++ S P Q EL +D
Sbjct: 166 LITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTED 223
>sp|Q9SQZ9|PITH1_ARATH PITH domain-containing protein At3g04780 OS=Arabidopsis thaliana
GN=At3g04780 PE=1 SV=2
Length = 176
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 101 QYSLYKHIDTENVECLNETVDGSGKTIFKPW---EDRLNKEKFVESDVDSELLINIPFTS 157
Q L ID VECLN++ S K ++ LN +ESD D +LLI IPF
Sbjct: 13 QVDLLDFIDWSGVECLNQSSSHSLPNALKQGYREDEGLN----LESDADEQLLIYIPFNQ 68
Query: 158 NIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASP 196
IKL I G + P +K F N+ M F +VN P
Sbjct: 69 VIKLHSFA-IKGPEEEGPKTVKFFSNKEHMCFSNVNDFP 106
>sp|Q9WTR0|MMP16_MOUSE Matrix metalloproteinase-16 OS=Mus musculus GN=Mmp16 PE=2 SV=3
Length = 607
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 17/114 (14%)
Query: 31 DNTCLYYLGFRGESSPLHRHGVTICN-YETTPSL-ADHKVDNMNSFPVMAHNHG------ 82
D T ++ GF G+SSP G + + Y P + D D+ + + NH
Sbjct: 183 DITIIFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLGNPNHDGNDLFL 242
Query: 83 ------GHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKP 130
GH G E HS+D T I Y++++T+N + N+ + G K P
Sbjct: 243 VAVHELGHALGLE-HSNDPT--AIMAPFYQYMETDNFKLPNDDLQGIQKIYGPP 293
>sp|P51512|MMP16_HUMAN Matrix metalloproteinase-16 OS=Homo sapiens GN=MMP16 PE=1 SV=2
Length = 607
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 17/114 (14%)
Query: 31 DNTCLYYLGFRGESSPLHRHGVTICN-YETTPSL-ADHKVDNMNSFPVMAHNHG------ 82
D T ++ GF G+SSP G + + Y P + D D+ + + NH
Sbjct: 183 DITIIFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLGNPNHDGNDLFL 242
Query: 83 ------GHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKP 130
GH G E HS+D T I Y++++T+N + N+ + G K P
Sbjct: 243 VAVHELGHALGLE-HSNDPT--AIMAPFYQYMETDNFKLPNDDLQGIQKIYGPP 293
>sp|A8XSW2|WDR48_CAEBR WD repeat-containing protein 48 homolog OS=Caenorhabditis briggsae
GN=CBG18038 PE=3 SV=3
Length = 691
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 40 FRGESSPLHRHGVTICNYETTPS-LADHKVDN-MNSFPVMAHNHGGHCCGEEDHSHDDTE 97
R E PLHR V+ Y+ S L D + ++ V H G + ++
Sbjct: 20 IRDEQEPLHRSAVSALQYDALHSRLFTGGSDTIIRTWSVPQHKDAFSARGGVRSAGKNSP 79
Query: 98 LGIQYSLYKHID--TENVECLNET--VDGSGKTIFKPWE-DRLNKEKFVES 143
+ Q SL +H D T+ V C N V S T K W +R NK +++S
Sbjct: 80 VQYQSSLERHTDWVTDMVLCGNGKLLVSSSNDTTVKVWSIERDNKHGYLDS 130
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,981,173
Number of Sequences: 539616
Number of extensions: 3859531
Number of successful extensions: 7715
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 7686
Number of HSP's gapped (non-prelim): 38
length of query: 215
length of database: 191,569,459
effective HSP length: 113
effective length of query: 102
effective length of database: 130,592,851
effective search space: 13320470802
effective search space used: 13320470802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)