Query psy16329
Match_columns 215
No_of_seqs 241 out of 617
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 18:36:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1730|consensus 100.0 2.9E-45 6.3E-50 306.7 9.1 137 77-215 1-137 (206)
2 PF06201 PITH: PITH domain; I 100.0 1.9E-38 4.2E-43 260.8 8.4 112 103-215 1-117 (152)
3 KOG0908|consensus 99.9 2.9E-24 6.4E-29 188.8 7.4 105 96-206 118-224 (288)
4 KOG1730|consensus 99.9 2.5E-22 5.4E-27 168.8 5.8 66 7-72 134-199 (206)
5 KOG0908|consensus 98.5 1.2E-07 2.7E-12 84.3 3.8 42 6-47 229-271 (288)
6 PF07738 Sad1_UNC: Sad1 / UNC- 82.8 4.9 0.00011 31.6 6.4 61 146-206 29-103 (135)
7 cd08666 APC10-HECTD3 APC10-lik 81.8 7.3 0.00016 31.8 7.1 49 136-184 28-79 (134)
8 cd08159 APC10-like APC10-like 80.2 6.4 0.00014 31.9 6.2 50 136-185 23-75 (129)
9 cd08365 APC10-like1 APC10-like 79.8 7.1 0.00015 31.7 6.4 49 136-184 24-75 (131)
10 COG5156 DOC1 Anaphase-promotin 79.0 2.3 5.1E-05 36.0 3.4 69 118-194 37-108 (189)
11 cd08366 APC10 APC10 subunit of 75.1 10 0.00022 31.0 6.0 50 136-185 27-79 (139)
12 cd08665 APC10-CUL7 APC10-like 73.8 15 0.00032 30.0 6.6 49 136-184 23-74 (131)
13 cd08667 APC10-ZZEF1 APC10/DOC1 73.7 12 0.00027 30.3 6.2 48 136-183 23-73 (131)
14 cd08664 APC10-HERC2 APC10-like 70.7 20 0.00043 30.0 6.8 48 137-184 47-97 (152)
15 PF14652 DUF4457: Domain of un 67.1 61 0.0013 29.9 10.0 39 147-185 277-317 (329)
16 KOG3437|consensus 53.0 28 0.0006 30.0 4.7 54 137-193 47-103 (184)
17 PF00754 F5_F8_type_C: F5/8 ty 52.8 29 0.00063 25.4 4.4 56 138-193 27-84 (129)
18 PF03256 APC10: Anaphase-promo 47.8 18 0.00039 31.1 2.9 48 136-183 55-105 (193)
19 COG2215 ABC-type uncharacteriz 41.2 17 0.00037 33.6 1.8 16 78-93 173-190 (303)
20 PF01834 XRCC1_N: XRCC1 N term 29.2 47 0.001 27.8 2.4 52 113-168 10-62 (153)
21 PF06165 Glyco_transf_36: Glyc 28.8 1.3E+02 0.0028 23.0 4.7 35 146-182 51-85 (110)
22 PF14652 DUF4457: Domain of un 26.5 1.8E+02 0.0039 26.8 6.0 50 137-186 70-125 (329)
23 PRK10019 nickel/cobalt efflux 24.6 39 0.00084 30.8 1.3 13 79-91 129-141 (279)
24 PF06590 PerB: PerB protein; 20.1 1.8E+02 0.0038 22.9 3.9 34 3-36 41-79 (129)
No 1
>KOG1730|consensus
Probab=100.00 E-value=2.9e-45 Score=306.65 Aligned_cols=137 Identities=53% Similarity=0.972 Sum_probs=129.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccccccccccccccceEEcCCCCCCcccccccCccccCCCCceecCCCcceEEEeecC
Q psy16329 77 MAHNHGGHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFT 156 (215)
Q Consensus 77 ~~h~H~~~c~~~~~~~~~~~~~g~~~sL~~~ID~~~v~cLNe~~~~s~~~v~kp~~~R~d~~~~leSD~DeQLii~IPFt 156 (215)
|+|+|+|+|..+ ++++|-+.|..++||++||+.+|+||||+.+++++.|||||+.|.|.+.+||||+|+|||++||||
T Consensus 1 mshghsH~c~a~--~~e~p~e~g~~ysLys~Idle~v~~LNEsv~gsgK~VFKpwe~R~d~se~vESDaD~eLLfniPFt 78 (206)
T KOG1730|consen 1 MSHGHSHNCAAE--REEHPEERGLAYSLYSRIDLEKVQTLNESVDGSGKSVFKPWEKRTDRSEYVESDADEELLFNIPFT 78 (206)
T ss_pred CCCCCCCCcchh--cccCchhcCccccceeEecHhHheecccccCCccccccchhhhhcchhhhhhccCCceeEEecccc
Confidence 788888887444 345577889999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEEEecCCCCCCCcEEEEeeCCCCCCcccCCCCCCeEEEEeCCCCceeeecCC
Q psy16329 157 SNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPDQEFELNQDSDASIEYPIM 215 (215)
Q Consensus 157 ~~VKl~SI~I~~~~~~~~Pk~iKlf~N~~~ldFd~ae~~p~Q~leL~~d~~g~~eypl~ 215 (215)
+.|||++|+|+|.+++++|.+||||+||+.||||||+.+|+|++.|+.+..|++|||++
T Consensus 79 g~vkLkgI~I~g~~d~shP~~~rlFkNR~~m~FdD~~~~~dqef~lt~d~~g~iey~~K 137 (206)
T KOG1730|consen 79 GNVKLKGISIMGEPDGSHPSKMRLFKNREQMDFDDAEAEPDQEFSLTRDLTGEIEYPTK 137 (206)
T ss_pred CceeEEEEEEEeCCCCCCchheEeecCCccCCcchhhcCcceecceecccCceEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999986
No 2
>PF06201 PITH: PITH domain; InterPro: IPR010400 The full-length, Txnl1, protein which is a probable component of the 32 kDa 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome. PITH derives from proteasome-interacting thioredoxin domain which this entry represents [].; PDB: 1XOY_A 1WWY_A.
Probab=100.00 E-value=1.9e-38 Score=260.85 Aligned_cols=112 Identities=52% Similarity=0.941 Sum_probs=84.7
Q ss_pred ccccccccccceEEcCCCCCCcc-cccccCccccCCCCceecCCCcceEEEeecCCceeeEEEEEecC-CCCCCCcEEEE
Q psy16329 103 SLYKHIDTENVECLNETVDGSGK-TIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGG-DSDSHPNRIKL 180 (215)
Q Consensus 103 sL~~~ID~~~v~cLNe~~~~s~~-~v~kp~~~R~d~~~~leSD~DeQLii~IPFt~~VKl~SI~I~~~-~~~~~Pk~iKl 180 (215)
||+++||+++++|||++..++++ .+||+|++|++. .+|+||+|+||||+|||+++||||||+|+++ +++++|++|||
T Consensus 1 sL~~~Id~~~~~cLN~~~~~~~~~~l~k~~~~r~d~-~~l~SD~D~QLii~IpF~~~Vkl~si~i~~~~~~~~~P~~iKl 79 (152)
T PF06201_consen 1 SLYSYIDLDKVECLNEDDPHSARNNLFKPWDDRLDP-PFLESDADEQLIIHIPFTQPVKLHSIIIKGPPDDDSAPKTIKL 79 (152)
T ss_dssp ESCCCB-TTT-EECSS-TTS-SCCCCSTTS--TTS----EE-SS-SSEEEEEEEEEEEEEEEEEEE---STTTSEEEEEE
T ss_pred ChHHhCcccccEEEeCCCCCCccceeEcccccccCc-cccccCCCceeEEEEccCCceEEEEEEEEeccCCCCCCeEEEE
Confidence 69999999999999999999999 889999999998 9999999999999999999999999999999 89999999999
Q ss_pred eeC-CCCCCcccCCC-CCCeEEEEeC-CCCceeeecCC
Q psy16329 181 FKN-RPGMTFDDVNA-SPDQEFELNQ-DSDASIEYPIM 215 (215)
Q Consensus 181 f~N-~~~ldFd~ae~-~p~Q~leL~~-d~~g~~eypl~ 215 (215)
|+| +++|||++|++ +|+|+++|++ +..|.+||||+
T Consensus 80 f~N~~~~ldF~~~~~~~p~q~~~l~~~~~~~~~~~~Lk 117 (152)
T PF06201_consen 80 FINQRPNLDFDDAESIKPTQELELTEEDSDGGVEYPLK 117 (152)
T ss_dssp EES-SS---CCHHCCS--SCEEE--TTTCCCT--EE--
T ss_pred EECCCCCcCccccccCCCCceEEcCccccCCceEeeee
Confidence 999 88899999998 5999999998 78889999986
No 3
>KOG0908|consensus
Probab=99.90 E-value=2.9e-24 Score=188.81 Aligned_cols=105 Identities=33% Similarity=0.544 Sum_probs=96.5
Q ss_pred CCcccccccccccccccceEEcCCCCCCcccccccCccccCCCCceecCCCcceEEEeecCCceeeEEEEEecCCCCCCC
Q psy16329 96 TELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHP 175 (215)
Q Consensus 96 ~~~g~~~sL~~~ID~~~v~cLNe~~~~s~~~v~kp~~~R~d~~~~leSD~DeQLii~IPFt~~VKl~SI~I~~~~~~~~P 175 (215)
.+.| +++|..+||..+++|||+++.+..++.+|. +.+.+++||+||||||.|||+++||+|||.|++++.+.+|
T Consensus 118 ~~Kg-q~dL~~~I~~~gleclNqsddH~l~nalkk-----~~ss~lesD~DeQl~isi~fnq~vk~hS~a~k~p~~~~~P 191 (288)
T KOG0908|consen 118 IVKG-QMDLKPFIDKVGLECLNQSDDHFLKNALKK-----NFSSNLESDCDEQLIISIPFNQAVKVHSIAIKGPANPLGP 191 (288)
T ss_pred cccc-eehhhhhhhhhcceeeccccccchHHHHhh-----ccccceecccccceEEEeeccCccceeeeecCCCCCCCCC
Confidence 5666 889999999999999999999999999975 3457899999999999999999999999999999888999
Q ss_pred cEEEEeeCCCC-CCcccCCC-CCCeEEEEeCCC
Q psy16329 176 NRIKLFKNRPG-MTFDDVNA-SPDQEFELNQDS 206 (215)
Q Consensus 176 k~iKlf~N~~~-ldFd~ae~-~p~Q~leL~~d~ 206 (215)
|+||||+|+|. |||+++++ +|+|.++|.+..
T Consensus 192 k~vkifin~pr~~~F~~a~~f~ptQ~lel~e~~ 224 (288)
T KOG0908|consen 192 KTVKIFINQPRTMDFENAESFEPTQLLELTELD 224 (288)
T ss_pred eeEEEEecCccccCcccccccCcccccchhhhh
Confidence 99999999886 99999998 599999988764
No 4
>KOG1730|consensus
Probab=99.86 E-value=2.5e-22 Score=168.78 Aligned_cols=66 Identities=48% Similarity=0.862 Sum_probs=62.2
Q ss_pred EeecccccccccEEEEEEcCCCCCCceEEEEEEEEeeeCCCCccceeeeeeecCCCcccccccCCC
Q psy16329 7 LVFRAAKFSNVYHLTCYFPTNFGSDNTCLYYLGFRGESSPLHRHGVTICNYETTPSLADHKVDNMN 72 (215)
Q Consensus 7 ~~l~~~kF~nv~~Ltlf~~~n~g~d~t~I~yigl~Ge~~~~~r~~v~~~vYE~~pnp~DH~~~~~~ 72 (215)
-++|.+|||||++|+|||+.|||+|+|+|+||||||||++..|+.+++|+||++|||+||++...+
T Consensus 134 y~~K~s~f~nv~nLsi~f~~nfG~D~TqI~YIGlRGeft~~~~h~~~i~~yea~a~~~dh~~~~~~ 199 (206)
T KOG1730|consen 134 YPTKISKFQNVHNLSIHFPKNFGEDTTQIYYIGLRGEFTELFRHEVAICNYEARANPADHKVHQVD 199 (206)
T ss_pred eccceeeeccceeEEEEeccccCCCcceEEEEEecceeeehhcCCceEEEEeccCChhhCcccccc
Confidence 478999999999999999999999999999999999999999999889999999999999977653
No 5
>KOG0908|consensus
Probab=98.46 E-value=1.2e-07 Score=84.27 Aligned_cols=42 Identities=29% Similarity=0.434 Sum_probs=38.7
Q ss_pred EEeecccccccccEEEEEEcCCCCC-CceEEEEEEEEeeeCCC
Q psy16329 6 FLVFRAAKFSNVYHLTCYFPTNFGS-DNTCLYYLGFRGESSPL 47 (215)
Q Consensus 6 ~~~l~~~kF~nv~~Ltlf~~~n~g~-d~t~I~yigl~Ge~~~~ 47 (215)
-|+||++|||||++|++|++.|+|+ |.|||.|||+.|+..+.
T Consensus 229 ~V~lryvkfqnV~sv~iFiq~n~gg~evtri~~~~~~GsPv~~ 271 (288)
T KOG0908|consen 229 PVPLRYVKFQNVNSVQIFIQSNQGGEEVTRISKLGLFGSPVPT 271 (288)
T ss_pred eEEeeeeeEEEeeEEEEEEecCCCCcccceeeeeeeccccCCC
Confidence 5899999999999999999999985 79999999999987664
No 6
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.
Probab=82.80 E-value=4.9 Score=31.63 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=36.9
Q ss_pred CcceEEEeecCCceeeEEEEEecCC-----CCCCCcEEEEeeCCCCC--------Ccc-cCCCCCCeEEEEeCCC
Q psy16329 146 DSELLINIPFTSNIKLKGLRLIGGD-----SDSHPNRIKLFKNRPGM--------TFD-DVNASPDQEFELNQDS 206 (215)
Q Consensus 146 DeQLii~IPFt~~VKl~SI~I~~~~-----~~~~Pk~iKlf~N~~~l--------dFd-~ae~~p~Q~leL~~d~ 206 (215)
...--+-|-|.+++.+.+|.|.-.+ -.++||.++||.-.... .|. +.+..+.|++.|....
T Consensus 29 g~~~~~~I~L~~~I~v~~v~i~h~~~~~~~~sSapk~f~V~g~~~~~~~~~~~LG~f~y~~~~~~~QtF~l~~~~ 103 (135)
T PF07738_consen 29 GSKGWLTIELSEPIYVTSVTIEHVEKSIAPFSSAPKDFEVWGSVDYPDEEWVLLGEFEYDSDGNSIQTFPLPRPP 103 (135)
T ss_dssp TT-EEEEEEEEEEEEEEEEEEE---GGGSG-TTSB-EEEEEEESSSSTS--EEEEEEE--TTS-SEEEEE-SS--
T ss_pred CCceEEEEEcCCcEEEEEEEEEEeccccCCcCCCCcEEEEEEEecccccceeeeceEEEcCCcCccEeeeeccCc
Confidence 4434456667899999999997532 46899999999754332 444 3344588999997664
No 7
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=81.81 E-value=7.3 Score=31.85 Aligned_cols=49 Identities=20% Similarity=0.361 Sum_probs=41.2
Q ss_pred CCCCceecCCCc-ceEEEeecCCceeeEEEEEecC--CCCCCCcEEEEeeCC
Q psy16329 136 NKEKFVESDVDS-ELLINIPFTSNIKLKGLRLIGG--DSDSHPNRIKLFKNR 184 (215)
Q Consensus 136 d~~~~leSD~De-QLii~IPFt~~VKl~SI~I~~~--~~~~~Pk~iKlf~N~ 184 (215)
+.+.|=+||.-. +=.|+|-|..-|.|+.|.|.-. ++...|++|.|++=.
T Consensus 28 ~~~tyWQSdG~qgpH~I~l~f~~~v~i~~l~i~v~~~DeSYtP~~I~V~~G~ 79 (134)
T cd08666 28 DPDTYWESDGSQGQHWIRLHMKKGTIIKKLLLTVDATDDNYMPKRVAVYGGE 79 (134)
T ss_pred CCCccEecCCCCCCeEEEEEECCCcEeeEEEEEecCCCCCcCCcEEEEEecC
Confidence 456789999766 6899999999999999999763 566889999999866
No 8
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=80.20 E-value=6.4 Score=31.88 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=39.8
Q ss_pred CCCCceecCCC-cceEEEeecCCceeeEEEEEecC--CCCCCCcEEEEeeCCC
Q psy16329 136 NKEKFVESDVD-SELLINIPFTSNIKLKGLRLIGG--DSDSHPNRIKLFKNRP 185 (215)
Q Consensus 136 d~~~~leSD~D-eQLii~IPFt~~VKl~SI~I~~~--~~~~~Pk~iKlf~N~~ 185 (215)
+.+.|=+||.- ++..|.+-|...|.|+.|.|.-. ++...|++|+|++=..
T Consensus 23 ~~~tyWQSdG~qphh~i~l~f~k~v~i~~l~i~~~~~DeSYtP~~I~V~~G~~ 75 (129)
T cd08159 23 NYDTYWQSDGSQGSHWIRLFMKKDVLIRVLAIFVDMADSSYMPSLVVVYGGHS 75 (129)
T ss_pred CCCccCCCCCCCCCEEEEEEEcCCcEEEEEEEEecCCCCCcCCcEEEEEecCC
Confidence 35678889853 35789999999999999999764 5668899999998543
No 9
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination. This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te
Probab=79.82 E-value=7.1 Score=31.72 Aligned_cols=49 Identities=22% Similarity=0.349 Sum_probs=40.6
Q ss_pred CCCCceecCCCc-ceEEEeecCCceeeEEEEEecC--CCCCCCcEEEEeeCC
Q psy16329 136 NKEKFVESDVDS-ELLINIPFTSNIKLKGLRLIGG--DSDSHPNRIKLFKNR 184 (215)
Q Consensus 136 d~~~~leSD~De-QLii~IPFt~~VKl~SI~I~~~--~~~~~Pk~iKlf~N~ 184 (215)
+.+.|=+||.-. +=.|+|-|..-|.|++|.|.-. ++...|++|+|++=.
T Consensus 24 ~~~tyWQSDG~q~pH~I~i~f~k~v~i~~l~l~vd~~DeSYtP~~I~V~~G~ 75 (131)
T cd08365 24 NTSTYWQSDGSQGSHWIRLKMKPDVLVRHLSLAVDATDSSYMPQRVVVAGGR 75 (131)
T ss_pred CCCceEccCCCCCCEEEEEEEcCCcEEEEEEEEecCCCCCCCCcEEEEEecC
Confidence 356788999655 5799999999999999999863 556889999999864
No 10
>COG5156 DOC1 Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]
Probab=78.98 E-value=2.3 Score=36.00 Aligned_cols=69 Identities=20% Similarity=0.260 Sum_probs=49.3
Q ss_pred CCCCCCcccccccCccccCCCCceecCCCcceEEEeecCCceeeEEEEEec---CCCCCCCcEEEEeeCCCCCCcccCCC
Q psy16329 118 ETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIG---GDSDSHPNRIKLFKNRPGMTFDDVNA 194 (215)
Q Consensus 118 e~~~~s~~~v~kp~~~R~d~~~~leSD~DeQLii~IPFt~~VKl~SI~I~~---~~~~~~Pk~iKlf~N~~~ldFd~ae~ 194 (215)
....++++.++. .+-+.|-+||.-.--=|+|-|..-+.|.++.+-- .++..+|++||+++ .++|+|++.
T Consensus 37 fK~g~p~r~~ld-----dn~dtyWqsDg~qPH~i~I~F~kr~~I~~v~lfls~t~DeSYtPs~i~v~a---G~~~~D~r~ 108 (189)
T COG5156 37 FKRGHPLRELLD-----DNMDTYWQSDGVQPHSIQISFDKRRYIQSVQLFLSFTQDESYTPSKIGVRA---GLTREDVRE 108 (189)
T ss_pred cccCCcHHHHhh-----cchhhhhccCCCCCceEEEEEeEEEeeeeehhhhhhhcccccCcceeEEec---cCChhhhee
Confidence 334455555552 1346788898777778899998888887777743 36779999999997 466777775
No 11
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination. This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the
Probab=75.15 E-value=10 Score=31.00 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=41.0
Q ss_pred CCCCceecCCCcceEEEeecCCceeeEEEEEecC---CCCCCCcEEEEeeCCC
Q psy16329 136 NKEKFVESDVDSELLINIPFTSNIKLKGLRLIGG---DSDSHPNRIKLFKNRP 185 (215)
Q Consensus 136 d~~~~leSD~DeQLii~IPFt~~VKl~SI~I~~~---~~~~~Pk~iKlf~N~~ 185 (215)
+.+.|=+||.-..=.|.|-|...|.|+.|.|.-. ++...|++|.+++=..
T Consensus 27 ~~~TyWQSDg~qPH~I~i~f~k~~~i~~l~i~vd~~~DeSYtP~~I~v~~G~~ 79 (139)
T cd08366 27 SLDTYWQSDGPQPHLINIQFSKKTDISAVALYLDYKLDESYTPSKISIRAGTS 79 (139)
T ss_pred CCCccCCCCCCCCEEEEEEecCCcEEEEEEEEEccCCCCCCCCEEEEEEEECC
Confidence 4567889987666788999999999999988653 6678899999998644
No 12
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui
Probab=73.83 E-value=15 Score=29.98 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=40.4
Q ss_pred CCCCceecCCCc-ceEEEeecCCceeeEEEEEecC--CCCCCCcEEEEeeCC
Q psy16329 136 NKEKFVESDVDS-ELLINIPFTSNIKLKGLRLIGG--DSDSHPNRIKLFKNR 184 (215)
Q Consensus 136 d~~~~leSD~De-QLii~IPFt~~VKl~SI~I~~~--~~~~~Pk~iKlf~N~ 184 (215)
+...|=+||... .=.|+|-|..-|.|+.|.|... ++...|++|.|.+=.
T Consensus 23 ~~~tyWQSdG~q~pH~I~i~f~k~v~I~~l~i~v~~~DeSYtPs~I~V~~G~ 74 (131)
T cd08665 23 NPKTYWESNGSTGSHYINIHMHRGVVIRQLYMLVASEDSSYMPARVVVLGGD 74 (131)
T ss_pred CCCceEccCCCCCCeEEEEEECCCcEEEEEEEEecCCCCCcCCeeEEEEecC
Confidence 446789999874 7799999999999999998764 456789999998754
No 13
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=73.68 E-value=12 Score=30.32 Aligned_cols=48 Identities=15% Similarity=0.291 Sum_probs=39.2
Q ss_pred CCCCceecCCCc-ceEEEeecCCceeeEEEEEecC--CCCCCCcEEEEeeC
Q psy16329 136 NKEKFVESDVDS-ELLINIPFTSNIKLKGLRLIGG--DSDSHPNRIKLFKN 183 (215)
Q Consensus 136 d~~~~leSD~De-QLii~IPFt~~VKl~SI~I~~~--~~~~~Pk~iKlf~N 183 (215)
+.+.|=+||.-. .=.|+|-|..-|-|+.|.|.-. ++...|++|+|++=
T Consensus 23 ~~~TYWQSDG~q~pH~I~i~f~~~v~i~~l~i~v~~~DeSYtPs~I~I~~G 73 (131)
T cd08667 23 ETSTYWQSDGSARSHWIRLKMKPDVVLRHLSIAVAATDQSYMPQQVTVSVG 73 (131)
T ss_pred CCCccCccCCCCCCeEEEEEecCCeEEEEEEEEEcCCCCCcCCcEEEEEec
Confidence 346789999763 5688999999999999888763 55688999999983
No 14
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2). This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo
Probab=70.66 E-value=20 Score=30.00 Aligned_cols=48 Identities=15% Similarity=0.267 Sum_probs=39.8
Q ss_pred CCCceecCCCc-ceEEEeecCCceeeEEEEEecC--CCCCCCcEEEEeeCC
Q psy16329 137 KEKFVESDVDS-ELLINIPFTSNIKLKGLRLIGG--DSDSHPNRIKLFKNR 184 (215)
Q Consensus 137 ~~~~leSD~De-QLii~IPFt~~VKl~SI~I~~~--~~~~~Pk~iKlf~N~ 184 (215)
.+.|=+||.-. +=.|+|-|..-|-|++|.|... ++...|++|.|++=.
T Consensus 47 ~~TYWQSdG~q~~HwI~l~~~~~v~I~~L~i~vd~~DeSY~Ps~I~V~~G~ 97 (152)
T cd08664 47 SGSYWQSSGSQGKHWIRLELHPDVLIHSLKIIVDPADSSYMPSLVVVSGGD 97 (152)
T ss_pred CCCeeccCCCCCceEEEEEECCCcEEEEEEEEecCCCCCcCCceEEEEecC
Confidence 56788998655 6899999999999999999864 446789999998754
No 15
>PF14652 DUF4457: Domain of unknown function (DUF4457)
Probab=67.06 E-value=61 Score=29.89 Aligned_cols=39 Identities=8% Similarity=0.206 Sum_probs=30.6
Q ss_pred cceEEEeecCCceeeEEEEEecC--CCCCCCcEEEEeeCCC
Q psy16329 147 SELLINIPFTSNIKLKGLRLIGG--DSDSHPNRIKLFKNRP 185 (215)
Q Consensus 147 eQLii~IPFt~~VKl~SI~I~~~--~~~~~Pk~iKlf~N~~ 185 (215)
+--.|+|-|.+||.|.-|.|--- ....+-|.++||.+..
T Consensus 277 ~~~~i~~~f~~p~~is~iriwNY~k~~~rGvk~~~~~ld~~ 317 (329)
T PF14652_consen 277 QPNVIYFIFDEPVTISMIRIWNYSKTPERGVKEVEIYLDDL 317 (329)
T ss_pred cccEEEEEeCCCeEEEEEEEEeccCCcccCeEEEEEEEcCc
Confidence 44688999999999999999532 2346689999999864
No 16
>KOG3437|consensus
Probab=52.98 E-value=28 Score=29.98 Aligned_cols=54 Identities=26% Similarity=0.403 Sum_probs=42.7
Q ss_pred CCCceecCCCcceEEEeecCCceeeEEEEEecC---CCCCCCcEEEEeeCCCCCCcccCC
Q psy16329 137 KEKFVESDVDSELLINIPFTSNIKLKGLRLIGG---DSDSHPNRIKLFKNRPGMTFDDVN 193 (215)
Q Consensus 137 ~~~~leSD~DeQLii~IPFt~~VKl~SI~I~~~---~~~~~Pk~iKlf~N~~~ldFd~ae 193 (215)
.+.|-+||.-.==.|+|-|..-|+|..+.|-.. ++..+|.+|||..- -+|.|+.
T Consensus 47 ~etyWqSdG~~PH~i~I~F~K~~~I~~v~if~~f~~DeSYtPs~i~I~~G---~g~~dl~ 103 (184)
T KOG3437|consen 47 PETYWQSDGSQPHLINIQFHKRVDIQYVVIFLDFKQDESYTPSKIKIRAG---NGFNDLW 103 (184)
T ss_pred hhHheecCCCCCeEEEEEEEeEEEEEEEEEEEEEecccccCceeEEEEec---CChhhee
Confidence 457788987776688999999999999999764 66789999999763 3455554
No 17
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=52.76 E-value=29 Score=25.40 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=41.9
Q ss_pred CCceecCCCcceEEEeecCCceeeEEEEEecCCCC-C-CCcEEEEeeCCCCCCcccCC
Q psy16329 138 EKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSD-S-HPNRIKLFKNRPGMTFDDVN 193 (215)
Q Consensus 138 ~~~leSD~DeQLii~IPFt~~VKl~SI~I~~~~~~-~-~Pk~iKlf~N~~~ldFd~ae 193 (215)
+.|+....+..-=|.|-|.++++|++|.|....+. . .|+.++|+.-....+|..+.
T Consensus 27 t~W~~~~~~~~~~i~idl~~~~~i~~i~i~~~~~~~~~~~~~~~i~~s~dg~~w~~~~ 84 (129)
T PF00754_consen 27 TAWCSNWDDSPQWIQIDLGKPYTISGISIQFRNDGNNGRPKSFKIEYSNDGSNWTTVA 84 (129)
T ss_dssp SSEEESSSSSTEEEEEEEEEEEEEEEEEEEEESSTTTEEEEEEEEEEESSSSSEEEEE
T ss_pred CEEECCCCCCCceEEEEeeeeEecceeeecccccccceeeeeeeeeeecccccccccc
Confidence 45554435555668889999999999999986543 3 79999999887666666554
No 18
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.
Probab=47.78 E-value=18 Score=31.08 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=35.9
Q ss_pred CCCCceecCCCcceEEEeecCCceeeEEEEEecC---CCCCCCcEEEEeeC
Q psy16329 136 NKEKFVESDVDSELLINIPFTSNIKLKGLRLIGG---DSDSHPNRIKLFKN 183 (215)
Q Consensus 136 d~~~~leSD~DeQLii~IPFt~~VKl~SI~I~~~---~~~~~Pk~iKlf~N 183 (215)
+...|=+||.-.-=.|.|-|..-|.|+.|.|--. ++...|++|.|++=
T Consensus 55 ~~~TyWQSDG~qpH~I~i~f~k~v~I~~l~iyvd~~~DeSYtPs~I~V~aG 105 (193)
T PF03256_consen 55 STETYWQSDGSQPHWITIQFHKRVIISSLSIYVDYKQDESYTPSKISVRAG 105 (193)
T ss_dssp -TT--EE--SSSSEEEEEEEEEEEEE-EEEEEEEHHHHGGGSEEEEEEEEE
T ss_pred ChhHhhccCCCCCEEEEEEEcCCcEEEEEEEEEccCcCCCCCceEEEEEEe
Confidence 4678899988776899999999999999999653 66789999999874
No 19
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=41.24 E-value=17 Score=33.57 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=9.7
Q ss_pred CCCCCC--CCCCCCCCCC
Q psy16329 78 AHNHGG--HCCGEEDHSH 93 (215)
Q Consensus 78 ~h~H~~--~c~~~~~~~~ 93 (215)
.|.|.| .|+|+|.|-.
T Consensus 173 ~~~h~H~~~~~Cgh~H~~ 190 (303)
T COG2215 173 DHDHDHHYQCACGHAHAP 190 (303)
T ss_pred ccCCccccccccccccCC
Confidence 455555 4777777743
No 20
>PF01834 XRCC1_N: XRCC1 N terminal domain; InterPro: IPR002706 DNA-repair protein Xrcc1 functions in the repair of single-strand DNA breaks in mammalian cells and forms a repair complex with beta-Pol, ligase III and PARP []. The NMR solution structure of the Xrcc1 N-terminal domain (Xrcc1 NTD) shows that the structural core is a beta-sandwich with beta-strands connected by loops, three helices and two short two-stranded beta-sheets at each connection side. The Xrcc1 NTD specifically binds single-strand break DNA (gapped and nicked) and a gapped DNA-beta-Pol complex [].; GO: 0003684 damaged DNA binding, 0000012 single strand break repair, 0005634 nucleus; PDB: 3K77_E 3K75_C 3LQC_A 1XNA_A 1XNT_A.
Probab=29.16 E-value=47 Score=27.85 Aligned_cols=52 Identities=8% Similarity=0.122 Sum_probs=36.0
Q ss_pred ceEEcCCCCCCcccccccCccccCCCCceecCCCc-ceEEEeecCCceeeEEEEEec
Q psy16329 113 VECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDS-ELLINIPFTSNIKLKGLRLIG 168 (215)
Q Consensus 113 v~cLNe~~~~s~~~v~kp~~~R~d~~~~leSD~De-QLii~IPFt~~VKl~SI~I~~ 168 (215)
+.|-.|+..+.+.|++++- .-+.|..+++.+ |+-+-+-|..++.|++|-|..
T Consensus 10 vS~SSed~~~~A~NLL~~d----~~r~W~~~~~gek~~~V~lQl~~~~~I~~IDIGN 62 (153)
T PF01834_consen 10 VSFSSEDPVHPAENLLKSD----TYRKWKCAKAGEKQASVELQLEKASQITSIDIGN 62 (153)
T ss_dssp EEESSS-SSSHGGGGSCGG----GCHHEEHSSTT-SEEEEEEEEEEEE--SEEEEEE
T ss_pred EEEeCCCCCCchhhccCcc----cCCcccccCCCCceEEEEEEecCceEEEEEeccC
Confidence 4566677789999999851 125677666554 666888999999999999863
No 21
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=28.83 E-value=1.3e+02 Score=23.03 Aligned_cols=35 Identities=23% Similarity=0.519 Sum_probs=26.0
Q ss_pred CcceEEEeecCCceeeEEEEEecCCCCCCCcEEEEee
Q psy16329 146 DSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFK 182 (215)
Q Consensus 146 DeQLii~IPFt~~VKl~SI~I~~~~~~~~Pk~iKlf~ 182 (215)
.-++-+.||=..+|+|+.|.|+-. +..|+++.|+.
T Consensus 51 ~~~~~v~V~~~~~vEi~~l~l~N~--~~~~r~L~vts 85 (110)
T PF06165_consen 51 ETELTVFVPPDDPVEIRRLRLTNT--SNRPRRLSVTS 85 (110)
T ss_dssp EEEEEEE--TTSSEEEEEEEEEE---SSS-EEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEEEEEEEC--cCCcEEEEEEE
Confidence 347899999999999999999974 34699999874
No 22
>PF14652 DUF4457: Domain of unknown function (DUF4457)
Probab=26.53 E-value=1.8e+02 Score=26.83 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=37.1
Q ss_pred CCCceec-CCCcceEEEeecCCceeeEEEEEecC-----CCCCCCcEEEEeeCCCC
Q psy16329 137 KEKFVES-DVDSELLINIPFTSNIKLKGLRLIGG-----DSDSHPNRIKLFKNRPG 186 (215)
Q Consensus 137 ~~~~leS-D~DeQLii~IPFt~~VKl~SI~I~~~-----~~~~~Pk~iKlf~N~~~ 186 (215)
..-|+.. ....+..|.|-|.++++|..|.|=-- +....-|.|+||.|...
T Consensus 70 ~~MWl~pf~~~~~~~i~i~f~~~~~is~iRIWNYNks~~ds~~GvK~v~I~ldg~~ 125 (329)
T PF14652_consen 70 EHMWLAPFSPGKQHVITIRFPEPTSISGIRIWNYNKSREDSYRGVKDVKIYLDGKL 125 (329)
T ss_pred cceEEeecCCCCCEEEEEEeCCCceeeEEEEEcCCCCcchhhcCeEEEEEEECCEE
Confidence 3445522 26678889999999999999999542 22356899999999654
No 23
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=24.57 E-value=39 Score=30.77 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCCC
Q psy16329 79 HNHGGHCCGEEDH 91 (215)
Q Consensus 79 h~H~~~c~~~~~~ 91 (215)
|.|+|+|+|.+.|
T Consensus 129 h~h~h~~~c~~~~ 141 (279)
T PRK10019 129 HDHDHEHHHDHGH 141 (279)
T ss_pred CCCCCCcCccccc
Confidence 4555567664443
No 24
>PF06590 PerB: PerB protein; InterPro: IPR009513 This family consists of several PerB or BfpV proteins found specifically in Escherichia coli. PerB is thought to play a role in regulating the expression of BfpA [].
Probab=20.15 E-value=1.8e+02 Score=22.86 Aligned_cols=34 Identities=21% Similarity=0.579 Sum_probs=23.7
Q ss_pred eEEEEeeccc-----ccccccEEEEEEcCCCCCCceEEE
Q psy16329 3 FLYFLVFRAA-----KFSNVYHLTCYFPTNFGSDNTCLY 36 (215)
Q Consensus 3 ~~~~~~l~~~-----kF~nv~~Ltlf~~~n~g~d~t~I~ 36 (215)
..+|||-|.. |+.|..+--|||.+-..++.-.||
T Consensus 41 iv~fippkasyhiilky~~tkhcelffsdhitgeqdiiy 79 (129)
T PF06590_consen 41 IVFFIPPKASYHIILKYNNTKHCELFFSDHITGEQDIIY 79 (129)
T ss_pred EEEEeCCCCcEEEEEEeCCcceEEEEeeccccCcceeEe
Confidence 4566766643 788888888999888766555554
Done!