Query psy16329
Match_columns 215
No_of_seqs 241 out of 617
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 18:37:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xoy_A Hypothetical protein AT 100.0 8.3E-40 2.8E-44 270.3 8.3 112 101-215 13-126 (161)
2 1wwy_A Thioredoxin-like protei 100.0 1.4E-35 4.8E-40 247.1 8.4 109 100-215 8-120 (171)
3 1wwy_A Thioredoxin-like protei 99.4 1.3E-13 4.4E-18 114.7 3.6 44 7-51 117-161 (171)
4 1tvg_A LOC51668 protein; cell 76.1 17 0.00058 28.6 8.9 73 122-203 35-116 (153)
5 4a41_A GH89_CBM32-5, alpha-N-a 75.5 11 0.00039 29.1 7.7 55 149-203 71-133 (161)
6 1jhj_A APC10; beta sandwich, j 56.4 7.8 0.00027 31.6 3.1 49 136-184 48-99 (171)
7 1gqp_A DOC1/APC10; cell cycle, 49.3 18 0.0006 30.8 4.3 49 136-184 79-130 (221)
8 3dfz_A SIRC, precorrin-2 dehyd 42.7 7.1 0.00024 32.7 0.9 16 101-116 19-35 (223)
9 4gqo_A LMO0859 protein; virule 32.8 9.2 0.00031 33.1 0.0 14 77-90 1-14 (433)
10 4g6x_A Glyoxalase/bleomycin re 31.4 10 0.00034 28.3 0.0 15 77-91 1-15 (155)
11 1ydx_A Type I restriction enzy 29.9 13 0.00046 32.2 0.6 8 77-84 1-8 (406)
12 3oka_C N-terminal His-affinity 29.6 24 0.00083 18.9 1.3 6 77-82 1-6 (21)
13 4b1m_A Levanase; hydrolase, CB 28.5 17 0.00057 29.0 0.8 19 97-116 18-36 (185)
14 3tcm_A Alanine aminotransferas 26.5 16 0.00054 33.1 0.4 9 186-194 218-226 (500)
15 2yjp_A Putative ABC transporte 25.7 15 0.0005 30.1 0.0 7 77-83 1-7 (291)
16 3uau_A JLPA, surface-exposed l 22.7 18 0.00061 32.2 0.0 9 107-115 59-67 (379)
17 2x7q_A Ca3427, possible thiami 22.6 18 0.00062 30.3 0.0 6 77-82 1-6 (321)
18 3lxl_A Tyrosine-protein kinase 21.8 19 0.00066 29.8 0.0 31 99-129 11-41 (327)
19 3f2z_A Uncharacterized protein 20.6 2.6E+02 0.0091 20.7 7.9 43 149-191 55-99 (159)
20 4g1u_A Hemin transport system 20.5 21 0.00072 32.0 0.0 8 77-84 1-8 (357)
21 2jda_A Yecbm32; hypothetical p 20.2 1.2E+02 0.004 21.9 4.1 41 149-189 44-84 (145)
No 1
>1xoy_A Hypothetical protein AT3G04780.1; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: b.18.1.26
Probab=100.00 E-value=8.3e-40 Score=270.28 Aligned_cols=112 Identities=33% Similarity=0.501 Sum_probs=106.0
Q ss_pred ccccccccccccceEEcCCCCCCcccccccCccccCCCCceecCCCcceEEEeecCCceeeEEEEEecCCCCCCCcEEEE
Q psy16329 101 QYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKL 180 (215)
Q Consensus 101 ~~sL~~~ID~~~v~cLNe~~~~s~~~v~kp~~~R~d~~~~leSD~DeQLii~IPFt~~VKl~SI~I~~~~~~~~Pk~iKl 180 (215)
+++|+++||+++|+|||++++++++++||||+ |.+.+.|++||+||||||+|||+++||||||+|+++++ ++||+|||
T Consensus 13 ~~~L~~~Id~~~v~cLNe~~~~~~~~v~k~~~-r~~~~~~leSD~DeQLli~IPFt~~VKl~Si~i~~~~~-~~Pk~iKl 90 (161)
T 1xoy_A 13 QVDLLDFIDWSGVECLNQSSSHSLPNALKQGY-REDEGLNLESDADEQLLIYIPFNQVIKLHSFAIKGPEE-EGPKTVKF 90 (161)
T ss_dssp CEESSTTBCCSSCEESCSCTTSCSHHHHSTTS-CCTTTCCEECSSCSSEEEEEEEEEEECEEEEEEECCTT-TSEEEEEE
T ss_pred hhhhhhhCcccccEEecCCCCCChhheechhh-hccCCccCcCCCCceEEEEeecCCcEEEEEEEEECCCC-CCCcEEEE
Confidence 78999999999999999999999999999998 66677899999999999999999999999999999888 99999999
Q ss_pred eeCCCCCCcccCCC-CCCeEEEEeCCC-CceeeecCC
Q psy16329 181 FKNRPGMTFDDVNA-SPDQEFELNQDS-DASIEYPIM 215 (215)
Q Consensus 181 f~N~~~ldFd~ae~-~p~Q~leL~~d~-~g~~eypl~ 215 (215)
|+||++||||+|++ +|+|+|+|++++ .| .|||||
T Consensus 91 f~N~~~ldFd~a~~~~p~Q~~el~~~~~~g-~~~~lr 126 (161)
T 1xoy_A 91 FSNKEHMCFSNVNDFPPSDTAELTEENLKG-KPVVLK 126 (161)
T ss_dssp EESCSCCCHHHHTTSCCSEEECCCTTGGGT-CCEECC
T ss_pred eeCCCCCChhhhccCCCceEEECCCCcCCC-cEEecc
Confidence 99999999999998 599999999996 67 899986
No 2
>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical protein, regulatory protei apoptosis, cancer; NMR {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=247.13 Aligned_cols=109 Identities=29% Similarity=0.525 Sum_probs=97.9
Q ss_pred cccccccccccccceEEcCCCCCCcccccccCccccCCCCceecCCCcceEEEeecCCceeeEEEEEecCCCCCCCcEEE
Q psy16329 100 IQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIK 179 (215)
Q Consensus 100 ~~~sL~~~ID~~~v~cLNe~~~~s~~~v~kp~~~R~d~~~~leSD~DeQLii~IPFt~~VKl~SI~I~~~~~~~~Pk~iK 179 (215)
.+++||++||+++|+|||+++.++++++++. ...||+||+||||||+|||+++||||||+|++++++++||+||
T Consensus 8 ~~~~L~~~ID~~~v~cLNe~~~~~~~~~l~~------~~~~leSD~DeQLli~IPFt~~VKl~Si~i~~~~~~~~Pk~iK 81 (171)
T 1wwy_A 8 GYMDLMPFINKAGCECLNESDEHGFDNCLRK------DTTFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVK 81 (171)
T ss_dssp CCBCCGGGEEEEEEEEESCCSSSCSSTTSSS------SSCCBCCSSCSCCEEEEEEEEEEEEEEEEECCCSSSCCBCEEE
T ss_pred chhhhhhhCcccccEEecCCCCCCHHHhhcc------CCCcCcCCCCceEEEEeecCCcEEEEEEEEECCCCCCCCcEEE
Confidence 3689999999999999999988876666641 4579999999999999999999999999999999999999999
Q ss_pred EeeCC-CCCCcccCCC-CCCeEEEEeCCC--CceeeecCC
Q psy16329 180 LFKNR-PGMTFDDVNA-SPDQEFELNQDS--DASIEYPIM 215 (215)
Q Consensus 180 lf~N~-~~ldFd~ae~-~p~Q~leL~~d~--~g~~eypl~ 215 (215)
||+|| ++||||+|++ +|+|+|+|++++ .| .|||||
T Consensus 82 lf~N~~~~ldFd~a~~~~p~Q~~eL~~~~~~~g-~~~~Lr 120 (171)
T 1wwy_A 82 IFINLPRSMDFEEAERSEPTQALELTEDDIKED-GIVPLR 120 (171)
T ss_dssp EEESCSSCCCTTHHHHSCCSSCEECCTTTSSTT-CCEECC
T ss_pred EeecCCCCcChhhhccCCCceEEEcCCcccCCC-cEEEcc
Confidence 99999 6899999997 599999999986 35 699986
No 3
>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical protein, regulatory protei apoptosis, cancer; NMR {Homo sapiens}
Probab=99.39 E-value=1.3e-13 Score=114.69 Aligned_cols=44 Identities=27% Similarity=0.440 Sum_probs=39.8
Q ss_pred EeecccccccccEEEEEEcCCCC-CCceEEEEEEEEeeeCCCCccc
Q psy16329 7 LVFRAAKFSNVYHLTCYFPTNFG-SDNTCLYYLGFRGESSPLHRHG 51 (215)
Q Consensus 7 ~~l~~~kF~nv~~Ltlf~~~n~g-~d~t~I~yigl~Ge~~~~~r~~ 51 (215)
++||++|||||+||||||++||| +|.|||+||||||++++. +++
T Consensus 117 ~~Lr~vkFqnV~sLtlf~~~n~~g~e~T~I~~I~l~Ge~~~~-~~m 161 (171)
T 1wwy_A 117 VPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQA-TNM 161 (171)
T ss_dssp EECCTTTCTTEEEEEEEECCBTTCCSSCCBCCEEEEEEESSC-CSC
T ss_pred EEccceEEcccCEEEEEEecCCCCCccEEEEEEEEEeEecCc-ccH
Confidence 79999999999999999999995 589999999999999875 443
No 4
>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A
Probab=76.12 E-value=17 Score=28.61 Aligned_cols=73 Identities=12% Similarity=0.121 Sum_probs=45.4
Q ss_pred CCcccccccCccccCCCCceecCCCcceEEEeecCCceeeEEEEEecCCCCCCCcEEEEeeCCCCC--CcccCC------
Q psy16329 122 GSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGM--TFDDVN------ 193 (215)
Q Consensus 122 ~s~~~v~kp~~~R~d~~~~leSD~DeQLii~IPFt~~VKl~SI~I~~~~~~~~Pk~iKlf~N~~~l--dFd~ae------ 193 (215)
.+..++|.. ...+.|......+|- |-|-|.++++|..|.|.. +.++.++|++...+- +|..+.
T Consensus 35 ~~~~~~iDg----n~~T~W~t~g~~Pq~-i~Idf~k~~~is~~~i~~----~~vk~~~ie~s~d~~p~~w~~i~e~ef~~ 105 (153)
T 1tvg_A 35 HPPENIIDG----NPETFWTTTGMFPQE-FIICFHKHVRIERLVIQS----YFVQTLKIEKSTSKEPVDFEQWIEKDLVH 105 (153)
T ss_dssp SCGGGGGSS----CTTCCEECCSCSSEE-EEEEEEEEEEEEEEEEEE----ESEEEEEEEEECSSSSCCCEEEEEEECCC
T ss_pred cCHHHcCcC----CCCceEECCCCCCcE-EEEECCCceEEEEEEEEe----cCCEEEEEEEECCCCCcceEEeEEEEecC
Confidence 456677853 124556543344542 345667999999999984 348999998876553 666542
Q ss_pred CC-CCeEEEEe
Q psy16329 194 AS-PDQEFELN 203 (215)
Q Consensus 194 ~~-p~Q~leL~ 203 (215)
.. ..|.+.+.
T Consensus 106 ~~n~~Q~~~~~ 116 (153)
T 1tvg_A 106 TEGQLQNEEIV 116 (153)
T ss_dssp CTTCCEEEEEC
T ss_pred CCCcEEEEEcC
Confidence 11 35666664
No 5
>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A*
Probab=75.47 E-value=11 Score=29.10 Aligned_cols=55 Identities=9% Similarity=0.256 Sum_probs=37.5
Q ss_pred eEEEeecCCceeeEEEEEecCCC--CCCCcEEEEeeCCCCCCcccCC-----C-CCCeEEEEe
Q psy16329 149 LLINIPFTSNIKLKGLRLIGGDS--DSHPNRIKLFKNRPGMTFDDVN-----A-SPDQEFELN 203 (215)
Q Consensus 149 Lii~IPFt~~VKl~SI~I~~~~~--~~~Pk~iKlf~N~~~ldFd~ae-----~-~p~Q~leL~ 203 (215)
.-|.|=|.++.+|.+|.+....+ ...|+..+|+.-...-+|..+. . ...|++.+.
T Consensus 71 ~~i~iDLg~~~~I~~v~~~~r~~~~~~~~~~y~I~~S~DG~~W~~v~~g~~~~~~~~~~~~f~ 133 (161)
T 4a41_A 71 QSITLELGGSYEINKFTYLPRSGAKNGNITKYELHVSEDGNNFRKISEGNWDDSGSLKTLKFN 133 (161)
T ss_dssp EEEEEEEEEEEEEEEEEEECCSSCCTTCEEEEEEEEESSSSCEEEEEEEECCSSSSCEEEEEE
T ss_pred EEEEEEcCCCEEEeEEEEEecCCCCCCcEEEEEEEEECCCCceEEeeeeeecCCCcEEEEEeC
Confidence 46778888999999999976432 3569999998865555555442 1 135666654
No 6
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9
Probab=56.36 E-value=7.8 Score=31.56 Aligned_cols=49 Identities=27% Similarity=0.393 Sum_probs=41.1
Q ss_pred CCCCceecCCCcceEEEeecCCceeeEEEEEecC---CCCCCCcEEEEeeCC
Q psy16329 136 NKEKFVESDVDSELLINIPFTSNIKLKGLRLIGG---DSDSHPNRIKLFKNR 184 (215)
Q Consensus 136 d~~~~leSD~DeQLii~IPFt~~VKl~SI~I~~~---~~~~~Pk~iKlf~N~ 184 (215)
+.+.|-+||.-..=.|.|-|...|.|+.|.|.-. ++...|++|.+++=.
T Consensus 48 ~~~TyWqSdg~qpH~I~i~f~k~v~i~~l~i~vd~~~DeSYtPs~I~v~aG~ 99 (171)
T 1jhj_A 48 NLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGN 99 (171)
T ss_dssp CTTCCEECCSSSSEEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEES
T ss_pred CCCeeEccCCCCCeEEEEEECCCceEEEEEEEECCCCCCCCCcEEEEEEEeC
Confidence 4568889997777788999999999999999764 667889999998754
No 7
>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9
Probab=49.27 E-value=18 Score=30.78 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=41.7
Q ss_pred CCCCceecCCCcceEEEeecCCceeeEEEEEecC---CCCCCCcEEEEeeCC
Q psy16329 136 NKEKFVESDVDSELLINIPFTSNIKLKGLRLIGG---DSDSHPNRIKLFKNR 184 (215)
Q Consensus 136 d~~~~leSD~DeQLii~IPFt~~VKl~SI~I~~~---~~~~~Pk~iKlf~N~ 184 (215)
+...|-+||.-.-=.|+|-|...|.|+.|.|.-. ++...|++|+|.+=.
T Consensus 79 s~~TyWQSDG~qPH~ItI~f~k~v~I~~L~iyvD~~~DeSYtPs~I~V~aG~ 130 (221)
T 1gqp_A 79 NYDTFWQSDGGQPHQLDIMFSKRMDICVMAIFFSMIADESYAPSLVKVYAGH 130 (221)
T ss_dssp CTTCCEECCSSSSEEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEES
T ss_pred CccceeccCCCCCeEEEEEEcCCceEEEEEEEECCCCCCCCCCEEEEEEEeC
Confidence 4568899998888899999999999999999764 567899999998753
No 8
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=42.67 E-value=7.1 Score=32.74 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=7.7
Q ss_pred cccccc-ccccccceEE
Q psy16329 101 QYSLYK-HIDTENVECL 116 (215)
Q Consensus 101 ~~sL~~-~ID~~~v~cL 116 (215)
++..|+ ++|+.+-.||
T Consensus 19 ~~~~~Pifl~L~gk~VL 35 (223)
T 3dfz_A 19 GRHMYTVMLDLKGRSVL 35 (223)
T ss_dssp ---CCEEEECCTTCCEE
T ss_pred ccCccccEEEcCCCEEE
Confidence 345555 5666665555
No 9
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}
Probab=32.85 E-value=9.2 Score=33.06 Aligned_cols=14 Identities=21% Similarity=0.204 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q psy16329 77 MAHNHGGHCCGEED 90 (215)
Q Consensus 77 ~~h~H~~~c~~~~~ 90 (215)
|.|+|+|++||..+
T Consensus 1 ~~~~~~~~~g~~~G 14 (433)
T 4gqo_A 1 MHHHHHHSSGVDLG 14 (433)
T ss_dssp --------------
T ss_pred CCccccccCCCCCC
Confidence 66777786666544
No 10
>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}
Probab=31.42 E-value=10 Score=28.31 Aligned_cols=15 Identities=20% Similarity=0.184 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC
Q psy16329 77 MAHNHGGHCCGEEDH 91 (215)
Q Consensus 77 ~~h~H~~~c~~~~~~ 91 (215)
|.|+|+|+||-+.+.
T Consensus 1 ~~~~~~~~~~~~~g~ 15 (155)
T 4g6x_A 1 MHHHHHHSSGVDLGT 15 (155)
T ss_dssp ---------------
T ss_pred CccccccccCCCcCc
Confidence 667777777666443
No 11
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=29.94 E-value=13 Score=32.20 Aligned_cols=8 Identities=50% Similarity=0.883 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q psy16329 77 MAHNHGGH 84 (215)
Q Consensus 77 ~~h~H~~~ 84 (215)
|+|+|+|+
T Consensus 1 ~~~~~~~~ 8 (406)
T 1ydx_A 1 MGHHHHHH 8 (406)
T ss_dssp --------
T ss_pred CCcccccc
Confidence 55555443
No 12
>3oka_C N-terminal His-affinity TAG; GT-B fold, alpha-mannosyltransferase, GDP-MAN binding, trans; HET: GDD; 2.20A {Escherichia coli}
Probab=29.64 E-value=24 Score=18.93 Aligned_cols=6 Identities=50% Similarity=0.922 Sum_probs=2.8
Q ss_pred CCCCCC
Q psy16329 77 MAHNHG 82 (215)
Q Consensus 77 ~~h~H~ 82 (215)
|+|.|+
T Consensus 1 mghhhh 6 (21)
T 3oka_C 1 MGHHHH 6 (26)
T ss_pred CCcccc
Confidence 445444
No 13
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=28.52 E-value=17 Score=29.01 Aligned_cols=19 Identities=5% Similarity=-0.062 Sum_probs=9.7
Q ss_pred CcccccccccccccccceEE
Q psy16329 97 ELGIQYSLYKHIDTENVECL 116 (215)
Q Consensus 97 ~~g~~~sL~~~ID~~~v~cL 116 (215)
+.....+|+.- ++++=+..
T Consensus 18 ~~~~~~~lF~g-~l~gW~~~ 36 (185)
T 4b1m_A 18 EGRHMTTPFMS-NMTGWTTV 36 (185)
T ss_dssp ---CCCCSCCB-SCCCCEEC
T ss_pred cccccCCcccC-cccCCeEC
Confidence 33345667766 66665544
No 14
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=26.50 E-value=16 Score=33.08 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=5.1
Q ss_pred CCCcccCCC
Q psy16329 186 GMTFDDVNA 194 (215)
Q Consensus 186 ~ldFd~ae~ 194 (215)
.+|+++++.
T Consensus 218 ~~d~~~l~~ 226 (500)
T 3tcm_A 218 GLETSDVKK 226 (500)
T ss_dssp BCCHHHHHH
T ss_pred CCCHHHHHH
Confidence 466666553
No 15
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=25.72 E-value=15 Score=30.10 Aligned_cols=7 Identities=43% Similarity=0.724 Sum_probs=0.0
Q ss_pred CCCCCCC
Q psy16329 77 MAHNHGG 83 (215)
Q Consensus 77 ~~h~H~~ 83 (215)
|+|+|+|
T Consensus 1 ~~~~~~~ 7 (291)
T 2yjp_A 1 MGHHHHH 7 (291)
T ss_dssp -------
T ss_pred CCccccc
Confidence 4454443
No 16
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=22.72 E-value=18 Score=32.20 Aligned_cols=9 Identities=22% Similarity=0.752 Sum_probs=5.0
Q ss_pred ccccccceE
Q psy16329 107 HIDTENVEC 115 (215)
Q Consensus 107 ~ID~~~v~c 115 (215)
.|+++...|
T Consensus 59 kIefsnF~C 67 (379)
T 3uau_A 59 KIEFSDFKC 67 (379)
T ss_dssp EEECCCCEE
T ss_pred eEEeeccee
Confidence 455555555
No 17
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=22.56 E-value=18 Score=30.31 Aligned_cols=6 Identities=67% Similarity=1.027 Sum_probs=0.0
Q ss_pred CCCCCC
Q psy16329 77 MAHNHG 82 (215)
Q Consensus 77 ~~h~H~ 82 (215)
|+|+|+
T Consensus 1 ~~~~~~ 6 (321)
T 2x7q_A 1 MAHHHH 6 (321)
T ss_dssp ------
T ss_pred CCcccc
Confidence 555554
No 18
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=21.80 E-value=19 Score=29.79 Aligned_cols=31 Identities=3% Similarity=-0.062 Sum_probs=15.9
Q ss_pred ccccccccccccccceEEcCCCCCCcccccc
Q psy16329 99 GIQYSLYKHIDTENVECLNETVDGSGKTIFK 129 (215)
Q Consensus 99 g~~~sL~~~ID~~~v~cLNe~~~~s~~~v~k 129 (215)
+....+.+.++..+.+.+.....|+...|++
T Consensus 11 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~ 41 (327)
T 3lxl_A 11 LYACQDPTIFEERHLKYISQLGKGNFGSVEL 41 (327)
T ss_dssp ------CCBCCGGGEEEEEEEEEETTEEEEE
T ss_pred HhhcChhhhhchhhhhhhhhccCCCCeEEEE
Confidence 3345666777777777766655555555553
No 19
>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A
Probab=20.59 E-value=2.6e+02 Score=20.67 Aligned_cols=43 Identities=12% Similarity=0.269 Sum_probs=31.4
Q ss_pred eEEEeecCCceeeEEEEEecCCC--CCCCcEEEEeeCCCCCCccc
Q psy16329 149 LLINIPFTSNIKLKGLRLIGGDS--DSHPNRIKLFKNRPGMTFDD 191 (215)
Q Consensus 149 Lii~IPFt~~VKl~SI~I~~~~~--~~~Pk~iKlf~N~~~ldFd~ 191 (215)
.-|.|=|-++.+|.+|.+....+ ...|+..+|++-...-+|..
T Consensus 55 ~~i~vDLg~~~~i~~v~~~~~~~~~~~~~~~~~I~~S~Dg~~W~~ 99 (159)
T 3f2z_A 55 YEIIIDMNHRVKIAQIELLPRGRGSNNPIKVVRFEASEDGTNWES 99 (159)
T ss_dssp EEEEEEEEEEEEEEEEEEEECCTTCCCCCCEEEEEEESSSSSCEE
T ss_pred EEEEEECCCceEEEEEEEEecCCCCCCCeeEEEEEEEcCCCCeEE
Confidence 45778888999999999976432 45799999988544444443
No 20
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=20.53 E-value=21 Score=32.04 Aligned_cols=8 Identities=50% Similarity=0.883 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q psy16329 77 MAHNHGGH 84 (215)
Q Consensus 77 ~~h~H~~~ 84 (215)
|+|+|+|+
T Consensus 1 ~~~~~~~~ 8 (357)
T 4g1u_A 1 MGHHHHHH 8 (357)
T ss_dssp --------
T ss_pred CCCccccc
Confidence 55555443
No 21
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A
Probab=20.21 E-value=1.2e+02 Score=21.91 Aligned_cols=41 Identities=5% Similarity=0.229 Sum_probs=31.8
Q ss_pred eEEEeecCCceeeEEEEEecCCCCCCCcEEEEeeCCCCCCc
Q psy16329 149 LLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTF 189 (215)
Q Consensus 149 Lii~IPFt~~VKl~SI~I~~~~~~~~Pk~iKlf~N~~~ldF 189 (215)
--|.|-|.++.+|.+|.|........|+..+|..-...-+|
T Consensus 44 ~~l~vDLg~~~~v~~v~i~~~~~~~~~~~~~i~~S~Dg~~w 84 (145)
T 2jda_A 44 SWVQLELDKEQSIENILIVPFKPTERKLKFSIFYSNDGKNW 84 (145)
T ss_dssp EEEEEEEEEEEEEEEEEEEESSTTTCCEEEEEEEESSSSSC
T ss_pred eeEEEECCCceEEEEEEEEeccCCCceEEEEEEEeCCCCce
Confidence 45778888999999999998765567999999875444444
Done!