RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16329
(215 letters)
>1xoy_A Hypothetical protein AT3G04780.1; structural genomics, protein
structure initiative, center for eukaryotic structural
genomics, CESG; NMR {Arabidopsis thaliana} SCOP:
b.18.1.26
Length = 161
Score = 130 bits (328), Expect = 1e-38
Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 101 QYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIK 160
Q L ID VECLN++ S K R ++ +ESD D +LLI IPF IK
Sbjct: 13 QVDLLDFIDWSGVECLNQSSSHSLPNALKQGY-REDEGLNLESDADEQLLIYIPFNQVIK 71
Query: 161 LKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNA-SPDQEFELNQDSDASIEYP 213
L I G + P +K F N+ M F +VN P EL +++
Sbjct: 72 LHSF-AIKGPEEEGPKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGKPVV 124
Score = 49.1 bits (117), Expect = 8e-08
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 9 FRAAKFSNVYHLTCYFPTN-FGSDNTCLYYLGFRGES 44
+ KF NV LT + N GS+ T + + G +
Sbjct: 125 LKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGST 161
>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical
protein, regulatory protei apoptosis, cancer; NMR {Homo
sapiens}
Length = 171
Score = 117 bits (295), Expect = 1e-33
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 9/122 (7%)
Query: 95 DTELGIQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIP 154
G L I+ ECLNE+ + + F+ESD D +LLI +
Sbjct: 3 SGSSGGYMDLMPFINKAGCECLNESDEHGFDNCLRK------DTTFLESDCDEQLLITVA 56
Query: 155 FTSNIKLKGLRLIGGDSDSHPNRIKLFKNRP-GMTFDDVNAS-PDQEFELNQ-DSDASIE 211
F +KL ++ G D+ P +K+F N P M F++ S P Q EL + D
Sbjct: 57 FNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGI 116
Query: 212 YP 213
P
Sbjct: 117 VP 118
Score = 43.0 bits (101), Expect = 1e-05
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 9 FRAAKFSNVYHLTCYFPTNFG-SDNTCLYYLGFRGESS 45
R KF NV +T + +N G + T + Y F G
Sbjct: 119 LRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPV 156
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.002
Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 38/142 (26%)
Query: 79 HNHGGHCCGEEDHSHDDTELG-IQYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNK 137
H+H H H D E G QY YK I + + + D K +D K
Sbjct: 1 HHH---------HHHMDFETGEHQYQ-YKDILSVFEDAFVDNFD------CKDVQDMP-K 43
Query: 138 EKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPD 197
+ ++D +I + LRL ++ F ++V +
Sbjct: 44 SILSKEEIDH--IIMSK---DAVSGTLRLFWTLLSKQEEMVQKF-------VEEVLR-IN 90
Query: 198 QEF-------ELNQDSDASIEY 212
+F E Q S + Y
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMY 112
Score = 27.1 bits (59), Expect = 4.9
Identities = 25/129 (19%), Positives = 41/129 (31%), Gaps = 51/129 (39%)
Query: 100 IQYSLYKHIDTENVECLNETVDG---SGKT-------------------IFKPW------ 131
++ +L + +NV +DG SGKT IF W
Sbjct: 140 LRQALLELRPAKNV-----LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKNC 192
Query: 132 ---EDRLNKEKFVESDVDSELLINIPFTSNIKLKGLRLIGGDSDSHPNRIK-LFKNRPG- 186
E L + + +D +SNIKL S ++ L K++P
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL--------RIHSIQAELRRLLKSKPYE 244
Query: 187 ---MTFDDV 192
+ +V
Sbjct: 245 NCLLVLLNV 253
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 25.8 bits (57), Expect = 4.2
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 81 HGGHCCGEEDHSHDDTELGIQYSLYKHIDTENVEC 115
G H +++H + +Y+L +D V
Sbjct: 35 TGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSS 69
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 27.0 bits (59), Expect = 5.2
Identities = 10/93 (10%), Positives = 25/93 (26%), Gaps = 2/93 (2%)
Query: 1 MLFLYFLVFRAAKFSNVYHLTCYFPTNFGSDNTCLYYLGFRGESSPLHRHGVTICNYETT 60
+ +Y ++ K ++ + G Y G + H +T
Sbjct: 213 TVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKI--YKDTEGYYTIGIGHLLTKSPSLNA 270
Query: 61 PSLADHKVDNMNSFPVMAHNHGGHCCGEEDHSH 93
K N+ V+ + ++ +
Sbjct: 271 AKSELDKAIGRNTNGVITKDEAEKLFNQDVDAA 303
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 25.6 bits (56), Expect = 5.9
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 81 HGGHCCGEEDHSHDDTELGIQYSLYKHIDTENVEC 115
HG H ++DH + E +Y L ++D + C
Sbjct: 40 HGKHNERQDDHGYISREFHRRYRLPSNVDQSALSC 74
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 26.6 bits (58), Expect = 7.6
Identities = 12/93 (12%), Positives = 24/93 (25%)
Query: 1 MLFLYFLVFRAAKFSNVYHLTCYFPTNFGSDNTCLYYLGFRGESSPLHRHGVTICNYETT 60
ML +Y +F AA+ + N + + + + + T
Sbjct: 218 MLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKAT 277
Query: 61 PSLADHKVDNMNSFPVMAHNHGGHCCGEEDHSH 93
P + K + H +D
Sbjct: 278 PPKLEDKSPDSPEMKDFRHGFDILVGQIDDALK 310
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 26.6 bits (58), Expect = 8.0
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 1 MLFLYFLVFRAAK 13
ML +Y +F AA+
Sbjct: 208 MLGVYLRIFLAAR 220
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.427
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,283,630
Number of extensions: 184944
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 21
Length of query: 215
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 125
Effective length of database: 4,188,903
Effective search space: 523612875
Effective search space used: 523612875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)