RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16329
         (215 letters)



>d1xoya_ b.18.1.26 (A:) Hypothetical protein AT3g04780/F7O18_27
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 161

 Score =  133 bits (336), Expect = 2e-40
 Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 3/114 (2%)

Query: 101 QYSLYKHIDTENVECLNETVDGSGKTIFKPWEDRLNKEKFVESDVDSELLINIPFTSNIK 160
           Q  L   ID   VECLN++   S     K    R ++   +ESD D +LLI IPF   IK
Sbjct: 13  QVDLLDFIDWSGVECLNQSSSHSLPNALKQGY-REDEGLNLESDADEQLLIYIPFNQVIK 71

Query: 161 LKGLRLIGGDSDSHPNRIKLFKNRPGMTFDDVN-ASPDQEFELNQDSDASIEYP 213
           L     I G  +  P  +K F N+  M F +VN   P    EL +++       
Sbjct: 72  LHSF-AIKGPEEEGPKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGKPVV 124



 Score = 46.3 bits (110), Expect = 3e-07
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 8   VFRAAKFSNVYHLTCYFPTN-FGSDNTCLYYLGFRGES 44
           V +  KF NV  LT +   N  GS+ T +  +   G +
Sbjct: 124 VLKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGST 161


>d2e29a1 d.58.7.5 (A:8-92) ATP-dependent RNA helicase DDX50 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score = 26.6 bits (59), Expect = 0.84
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 165 RLIGGDSDSHPNRIKLFKNRPGMTFDDVNASPDQEFELN-QDSDASIEYP 213
           R +  ++ S   R+ L K   G+ F DV  +  +  +    DSD  +  P
Sbjct: 36  RKLSSNAVSQITRMCLLKGNMGVCF-DVPTTESERLQAEWHDSDWILSVP 84


>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus
           thermophilus [TaxId: 274]}
          Length = 191

 Score = 27.3 bits (59), Expect = 1.3
 Identities = 13/117 (11%), Positives = 22/117 (18%), Gaps = 4/117 (3%)

Query: 8   VFRAAKFSNVYHLTCYFPTNFGSDNTCLYYLGFRGESSPLHRHGVTICNYETTPSLADHK 67
           + R      V       PT              +     +H        +        + 
Sbjct: 39  ILRTCDAVGVLEAHAVNPTGGVPTFNETSGGSHKWVYLRVHPDLHEAFRFLKERGFTVYA 98

Query: 68  VDNMNSFPVMAHNHGGH----CCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETV 120
                                  G E     +  L +     K      V+ LN +V
Sbjct: 99  TALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPMLGMVQSLNVSV 155


>d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 262

 Score = 25.9 bits (56), Expect = 4.3
 Identities = 8/44 (18%), Positives = 15/44 (34%)

Query: 51  GVTICNYETTPSLADHKVDNMNSFPVMAHNHGGHCCGEEDHSHD 94
           G      E  P+    ++    + P +    G +C G+     D
Sbjct: 175 GAFAVVMEMVPAELATQITGKLTIPTVGIGAGPNCDGQVLVWQD 218


>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase
           {Escherichia coli [TaxId: 562]}
          Length = 330

 Score = 25.6 bits (55), Expect = 5.8
 Identities = 8/44 (18%), Positives = 16/44 (36%)

Query: 77  MAHNHGGHCCGEEDHSHDDTELGIQYSLYKHIDTENVECLNETV 120
            + N GG        + D T   + ++LY+     +    +E  
Sbjct: 122 QSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWY 165


>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 31

 Score = 22.7 bits (49), Expect = 6.2
 Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 2/17 (11%)

Query: 7  LVFRAAKFSNVYHLTCY 23
          LV RA    NVYHL C+
Sbjct: 17 LVMRAQ--GNVYHLKCF 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 815,788
Number of extensions: 36728
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 9
Length of query: 215
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 133
Effective length of database: 1,281,736
Effective search space: 170470888
Effective search space used: 170470888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)