BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16330
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NQ3|A Chain A, Crystal Structure Of The C2 Domain Of Human Itchy Homolog
E3 Ubiquitin Protein Ligase
Length = 173
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 35 PNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGE 94
P+PY+E+ VD ++ KT + NT PKW + TV+V+P S + FR+ H+T + D +G
Sbjct: 57 PSPYVEVTVDGQSKKTEKC-NNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVLLGT 115
Query: 95 KRLN 98
L+
Sbjct: 116 AALD 119
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 36 NPYIEL--YVDYKNPK----TTRVVKNTYQPKWNEEFTVLVSPYS-IILFRLLDHRTFRR 88
+PY++L YV +N + T+ +K T PKWNEEF V+P + +LF + D R
Sbjct: 43 DPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFRVNPSNHRLLFEVFDENRLTR 102
Query: 89 DCTIGE 94
D +G+
Sbjct: 103 DDFLGQ 108
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 35 PNPYIELYVDYKNP-KTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIG 93
P+P+ ++ VD +T VKNT PKWN+ + + V I + +H+ + G
Sbjct: 26 PDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTDSITISVWNHKKIHKKQGAG 85
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 36 NPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS-----IILFRLLDHRTFRR 88
+P++++Y+ D K+ T+V + P WNE F PY I+ ++LD+ F R
Sbjct: 48 DPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSR 107
Query: 89 DCTIGE 94
+ IGE
Sbjct: 108 NDPIGE 113
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 36 NPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIIL-----FRLLDHRTFRR 88
+PYI++ + + K+ TRV++ T P ++E FT PY+ I F +L F R
Sbjct: 45 DPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSR 104
Query: 89 DCTIGE 94
D IGE
Sbjct: 105 DDIIGE 110
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 35 PNPYIELYVDYKNP-KTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIG 93
P+P+ ++ VD +T VKNT PKWN+ + + + + + +H+ + G
Sbjct: 24 PDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDLYIGKSDSVTISVWNHKKIHKKQGAG 83
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 36 NPYIE--LYVDYKNPKTTRVVKNTYQPKWNEEFTV----LVSPYSIILFRLLDHRTFRRD 89
NPY++ L D KN K T V + T +P + E +T L + +L ++D F R
Sbjct: 55 NPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRH 114
Query: 90 CTIGE 94
C IG+
Sbjct: 115 CVIGK 119
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 35 PNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDC 90
P+PY+EL++ + K TR N P WNE F ++ P +++ L+D + D
Sbjct: 42 PDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD-ANYVMDE 100
Query: 91 TIGEKRLNTST 101
T+G S+
Sbjct: 101 TLGTATFTVSS 111
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 35 PNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDC 90
P+PY+EL++ + K TR N P WNE F ++ P +++ L+D + D
Sbjct: 27 PDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN-YVMDE 85
Query: 91 TIGEKRLNTST 101
T+G S+
Sbjct: 86 TLGTATFTVSS 96
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 35 PNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDC 90
P+PY+EL++ + K TR N P WNE F ++ P +++ L+D + D
Sbjct: 42 PDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD-ANYVMDE 100
Query: 91 TIGEKRLNTST 101
T+G S+
Sbjct: 101 TLGTATFTVSS 111
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 36 NPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFR 79
NPY+++Y KN + T+ VK T +PKWN+ F + SP FR
Sbjct: 43 NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF--IYSPVHRREFR 88
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 36 NPYIELYV----DYKNPKTTRVVKNTYQPKWNEEF 66
NPY+++Y KN + T+ VK T +PKWN+ F
Sbjct: 40 NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 74
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 51 TRVVKNTYQPKWNEEFTVLVSPY-SIILFRLLDHRTFRRDCTIGE 94
T+ +K + PKWNEE V P ILF + D RD +G+
Sbjct: 50 TKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQ 94
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 51 TRVVKNTYQPKWNEEFTVLVSPYS-IILFRLLDHRTFRRDCTIGE 94
T+ +K + PKWNEE V P +LF + D RD +G+
Sbjct: 62 TKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQ 106
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 36 NPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS-----IILFRLLDHRTFRR 88
+PY+++++ D K T+V + T P +NE+FT V PYS ++ + D F +
Sbjct: 64 DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV-PYSELGGKTLVMAVYDFDRFSK 122
Query: 89 DCTIGEKRLNTST 101
IGE ++ +T
Sbjct: 123 HDIIGEFKVPMNT 135
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 36 NPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLL-----DHRTFRR 88
+PY+++++ D K T+V + T P +NE+FT V PYS + + L D F +
Sbjct: 41 DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV-PYSELAGKTLVMAVYDFDRFSK 99
Query: 89 DCTIGEKRLNTST 101
IGE ++ +T
Sbjct: 100 HDIIGEFKVPMNT 112
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 36 NPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS-----IILFRLLDHRTFRR 88
+PY+++++ D K T+V + T P +NE+FT V PYS ++ + D F +
Sbjct: 56 DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV-PYSELGGKTLVMAVYDFDRFSK 114
Query: 89 DCTIGEKRLNTST 101
IGE ++ +T
Sbjct: 115 HDIIGEFKVPMNT 127
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 36 NPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS-----IILFRLLDHRTFRR 88
+PY+++++ D K T+V + T P +NE+FT V PYS ++ + D F +
Sbjct: 56 DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV-PYSELGGKTLVMAVYDFDRFSK 114
Query: 89 DCTIGEKRLNTST 101
IGE ++ +T
Sbjct: 115 HDIIGEFKVPMNT 127
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 36 NPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS-----IILFRLLDHRTFRR 88
+PY+++++ D K T+V + T P +NE+FT V PYS ++ + D F +
Sbjct: 39 DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV-PYSELGGKTLVMAVYDFDRFSK 97
Query: 89 DCTIGEKRLNTST 101
IGE ++ +T
Sbjct: 98 HDIIGEFKVPMNT 110
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 34 KPNPYIELYVDYKNPKTTRVVKNTYQPKWN 63
K NPY E+ + ++ TTR +++T PKWN
Sbjct: 407 KSNPYCEISMGSQS-YTTRTIQDTLNPKWN 435
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 36 NPYIELYV--DYKNP--KTTRVVKNTYQPKWNEEFTVLVSP 72
+PY++L + D KN + T+ +++T P+WNE FT + P
Sbjct: 39 DPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKP 79
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 36 NPYIELYV--DYKNP--KTTRVVKNTYQPKWNEEFTVLVSP 72
+PY++L + D KN + T+ +++T P+WNE FT + P
Sbjct: 38 DPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKP 78
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 36 NPYIELYV--DYKNP--KTTRVVKNTYQPKWNEEFTVLVSP 72
+PY++L + D KN + T+ +++T P+WNE FT + P
Sbjct: 40 DPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKP 80
>pdb|1GMI|A Chain A, Structure Of The C2 Domain From Novel Protein Kinase C
Epsilon
Length = 136
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 36 NPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRL-----LDHRTFRRDC 90
+PYI L VD T + T P W++EF V I + + + F +C
Sbjct: 39 DPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANC 98
Query: 91 TI 92
TI
Sbjct: 99 TI 100
>pdb|1DQ3|A Chain A, Crystal Structure Of An Archaeal Intein-Encoded Homing
Endonuclease Pi-Pfui
Length = 454
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 39 IELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSII 76
+ +YV +P++ RVVK W E V+ Y II
Sbjct: 49 VPIYVKSFDPESKRVVKGKVNVIWKYELGKDVTKYEII 86
>pdb|2FK9|A Chain A, Human Protein Kinase C, Eta
Length = 157
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 36 NPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRL-----LDHRTFRRDC 90
+PY+ + VD T + T +P +NEEF V+ + + L + F +C
Sbjct: 61 DPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDGGHLELAVFHETPLGYDHFVANC 120
Query: 91 TI 92
T+
Sbjct: 121 TL 122
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 35 PNPYIELY----VDYKNPKTTRVVKNTYQPKWNE 64
+PY++L+ N T+ ++NT P WNE
Sbjct: 50 ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNE 83
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 36 NPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTFRRD 89
+PY+++Y+ D K T+V + T P +NE F V + + F + D F R
Sbjct: 43 DPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRH 102
Query: 90 CTIGE 94
IG+
Sbjct: 103 DLIGQ 107
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 36 NPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTFRRD 89
+PY+++Y+ D K T+V + T P +NE F V + + F + D F R
Sbjct: 42 DPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRH 101
Query: 90 CTIGE 94
IG+
Sbjct: 102 DLIGQ 106
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 35 PNPYIELY----VDYKNPKTTRVVKNTYQPKWNE 64
+PY++L+ N T+ ++NT P WNE
Sbjct: 48 ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNE 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,570,532
Number of Sequences: 62578
Number of extensions: 80766
Number of successful extensions: 250
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 37
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)