Query psy16330
Match_columns 101
No_of_seqs 113 out of 1165
Neff 10.4
Searched_HMMs 46136
Date Fri Aug 16 18:39:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08677 C2A_Synaptotagmin-13 C 99.9 3.5E-23 7.6E-28 115.4 11.3 92 3-100 5-104 (118)
2 KOG1030|consensus 99.9 2.8E-22 6.1E-27 116.2 9.9 85 11-100 5-92 (168)
3 cd08393 C2A_SLP-1_2 C2 domain 99.9 2.4E-21 5.3E-26 109.8 11.7 97 2-101 5-111 (125)
4 cd08381 C2B_PI3K_class_II C2 d 99.9 2.3E-21 4.9E-26 109.5 11.4 94 2-101 5-108 (122)
5 cd08392 C2A_SLP-3 C2 domain fi 99.9 2.9E-21 6.3E-26 109.8 11.5 97 2-101 5-111 (128)
6 cd08387 C2A_Synaptotagmin-8 C2 99.9 7.3E-21 1.6E-25 107.6 12.2 97 2-101 6-109 (124)
7 cd04029 C2A_SLP-4_5 C2 domain 99.9 1E-20 2.2E-25 107.3 12.4 97 2-100 5-110 (125)
8 cd04016 C2_Tollip C2 domain pr 99.9 7.1E-21 1.5E-25 107.1 11.7 84 12-100 2-88 (121)
9 cd08388 C2A_Synaptotagmin-4-11 99.9 1E-20 2.2E-25 107.6 12.3 97 2-101 6-111 (128)
10 cd08680 C2_Kibra C2 domain fou 99.9 5.7E-21 1.2E-25 108.0 11.0 95 3-100 5-109 (124)
11 cd08385 C2A_Synaptotagmin-1-5- 99.9 1.3E-20 2.8E-25 106.6 12.0 97 2-101 6-109 (124)
12 cd08407 C2B_Synaptotagmin-13 C 99.9 7.9E-21 1.7E-25 109.1 10.8 98 2-100 5-111 (138)
13 cd08406 C2B_Synaptotagmin-12 C 99.9 1.2E-20 2.6E-25 108.2 11.5 95 2-99 5-108 (136)
14 cd08379 C2D_MCTP_PRT_plant C2 99.9 7.8E-21 1.7E-25 107.6 10.1 84 13-100 1-95 (126)
15 cd04028 C2B_RIM1alpha C2 domai 99.9 2.7E-20 5.9E-25 107.7 11.6 90 10-101 27-123 (146)
16 cd04032 C2_Perforin C2 domain 99.9 2.7E-20 5.9E-25 105.5 11.4 87 9-100 25-115 (127)
17 cd08395 C2C_Munc13 C2 domain t 99.9 2.1E-20 4.5E-25 105.1 10.2 84 13-100 1-96 (120)
18 cd04042 C2A_MCTP_PRT C2 domain 99.9 2.7E-20 5.9E-25 104.9 10.6 85 13-100 1-87 (121)
19 cd08390 C2A_Synaptotagmin-15-1 99.8 8E-20 1.7E-24 103.1 12.5 97 1-100 3-107 (123)
20 cd04031 C2A_RIM1alpha C2 domai 99.8 4.4E-20 9.5E-25 104.4 11.3 95 3-100 7-111 (125)
21 cd08682 C2_Rab11-FIP_classI C2 99.8 2.8E-20 6E-25 105.5 10.3 83 14-100 1-91 (126)
22 cd04039 C2_PSD C2 domain prese 99.8 3.9E-20 8.5E-25 102.4 10.6 88 12-100 1-93 (108)
23 cd08384 C2B_Rabphilin_Doc2 C2 99.8 8.4E-20 1.8E-24 104.4 12.2 95 3-100 4-107 (133)
24 cd08404 C2B_Synaptotagmin-4 C2 99.8 4.2E-20 9.2E-25 106.0 10.8 96 2-100 5-109 (136)
25 cd08375 C2_Intersectin C2 doma 99.8 5.9E-20 1.3E-24 105.5 11.2 89 8-100 11-102 (136)
26 cd08386 C2A_Synaptotagmin-7 C2 99.8 9.7E-20 2.1E-24 103.1 12.0 97 2-101 6-110 (125)
27 cd04030 C2C_KIAA1228 C2 domain 99.8 1.1E-19 2.3E-24 103.1 12.0 96 2-100 6-112 (127)
28 cd04009 C2B_Munc13-like C2 dom 99.8 5.4E-20 1.2E-24 105.2 10.8 96 2-100 6-114 (133)
29 cd08521 C2A_SLP C2 domain firs 99.8 8.9E-20 1.9E-24 102.9 11.5 96 2-100 4-109 (123)
30 cd04041 C2A_fungal C2 domain f 99.8 6.9E-20 1.5E-24 101.9 10.7 86 12-100 1-95 (111)
31 cd08405 C2B_Synaptotagmin-7 C2 99.8 1.3E-19 2.8E-24 104.0 11.3 96 2-100 5-109 (136)
32 cd08408 C2B_Synaptotagmin-14_1 99.8 1.3E-19 2.8E-24 104.2 10.9 95 3-100 6-110 (138)
33 cd08402 C2B_Synaptotagmin-1 C2 99.8 1.4E-19 3.1E-24 103.8 11.0 95 3-100 6-109 (136)
34 cd08410 C2B_Synaptotagmin-17 C 99.8 1.6E-19 3.6E-24 103.5 11.1 95 2-99 4-107 (135)
35 cd08403 C2B_Synaptotagmin-3-5- 99.8 1.4E-19 3.1E-24 103.6 10.8 97 1-100 3-108 (134)
36 cd08382 C2_Smurf-like C2 domai 99.8 1.9E-19 4.1E-24 101.8 10.9 84 14-100 2-88 (123)
37 cd08389 C2A_Synaptotagmin-14_1 99.8 2E-19 4.3E-24 101.8 10.9 96 2-101 6-109 (124)
38 cd04021 C2_E3_ubiquitin_ligase 99.8 3.6E-19 7.9E-24 100.9 11.9 86 12-100 2-87 (125)
39 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 2.5E-19 5.4E-24 101.0 11.0 85 14-100 2-88 (121)
40 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 3.4E-19 7.3E-24 105.0 12.0 88 10-100 25-122 (162)
41 cd04038 C2_ArfGAP C2 domain pr 99.8 5.5E-19 1.2E-23 102.3 11.6 84 12-100 2-87 (145)
42 cd08688 C2_KIAA0528-like C2 do 99.8 3.2E-19 6.9E-24 99.1 10.2 83 14-100 1-90 (110)
43 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 4.4E-19 9.6E-24 100.0 10.8 83 14-99 2-86 (121)
44 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 4.7E-19 1E-23 100.1 10.7 84 13-100 1-87 (123)
45 cd08692 C2B_Tac2-N C2 domain s 99.8 6.6E-19 1.4E-23 100.3 11.1 95 3-100 5-108 (135)
46 cd08376 C2B_MCTP_PRT C2 domain 99.8 6.2E-19 1.4E-23 98.6 10.9 83 14-100 2-87 (116)
47 cd04022 C2A_MCTP_PRT_plant C2 99.8 3.8E-19 8.3E-24 101.0 10.1 84 13-100 1-91 (127)
48 cd04045 C2C_Tricalbin-like C2 99.8 5E-19 1.1E-23 99.7 10.4 86 12-100 1-88 (120)
49 cd08681 C2_fungal_Inn1p-like C 99.8 8.6E-19 1.9E-23 98.3 11.0 84 12-100 1-88 (118)
50 cd08685 C2_RGS-like C2 domain 99.8 4.8E-19 1E-23 99.6 9.7 90 7-100 7-105 (119)
51 cd04036 C2_cPLA2 C2 domain pre 99.8 7.7E-19 1.7E-23 98.7 10.5 83 14-100 2-89 (119)
52 cd08409 C2B_Synaptotagmin-15 C 99.8 7.5E-19 1.6E-23 101.0 10.3 93 3-99 6-107 (137)
53 cd08678 C2_C21orf25-like C2 do 99.8 1E-18 2.3E-23 99.1 10.5 82 14-100 1-85 (126)
54 cd04046 C2_Calpain C2 domain p 99.8 1.9E-18 4.1E-23 98.0 11.2 84 12-100 3-88 (126)
55 cd08394 C2A_Munc13 C2 domain f 99.8 1.8E-18 3.9E-23 97.4 10.9 81 11-100 1-83 (127)
56 cd04037 C2E_Ferlin C2 domain f 99.8 2.8E-18 6E-23 97.1 11.7 84 14-100 2-89 (124)
57 cd04018 C2C_Ferlin C2 domain t 99.8 1.1E-18 2.4E-23 101.6 10.1 87 13-100 1-102 (151)
58 cd08377 C2C_MCTP_PRT C2 domain 99.8 3.3E-18 7.1E-23 96.0 11.4 85 12-100 1-87 (119)
59 cd00276 C2B_Synaptotagmin C2 d 99.8 2.7E-18 5.9E-23 98.0 11.2 95 3-100 5-108 (134)
60 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 3E-18 6.6E-23 97.9 11.2 84 14-100 2-93 (133)
61 cd04024 C2A_Synaptotagmin-like 99.8 2.2E-18 4.8E-23 97.8 10.5 85 12-100 1-90 (128)
62 cd04044 C2A_Tricalbin-like C2 99.8 3.2E-18 7E-23 96.6 11.0 87 12-100 2-91 (124)
63 cd04010 C2B_RasA3 C2 domain se 99.8 2.1E-18 4.5E-23 100.2 10.1 83 13-100 1-105 (148)
64 cd04015 C2_plant_PLD C2 domain 99.8 3.6E-18 7.8E-23 100.3 11.1 89 11-100 6-123 (158)
65 cd04019 C2C_MCTP_PRT_plant C2 99.8 2.8E-18 6E-23 99.9 10.3 83 14-100 2-88 (150)
66 cd04014 C2_PKC_epsilon C2 doma 99.8 4.3E-18 9.2E-23 97.2 10.9 90 11-100 3-100 (132)
67 cd04011 C2B_Ferlin C2 domain s 99.8 4.5E-18 9.7E-23 94.6 10.5 84 10-101 2-92 (111)
68 cd04035 C2A_Rabphilin_Doc2 C2 99.8 9.6E-18 2.1E-22 94.7 11.9 95 2-100 5-109 (123)
69 cd04050 C2B_Synaptotagmin-like 99.8 3.8E-18 8.3E-23 94.0 9.9 80 14-100 2-84 (105)
70 cd04043 C2_Munc13_fungal C2 do 99.8 1E-17 2.2E-22 94.9 11.7 85 13-100 2-91 (126)
71 cd04048 C2A_Copine C2 domain f 99.8 3.3E-18 7.2E-23 96.3 9.6 84 14-100 3-98 (120)
72 cd08686 C2_ABR C2 domain in th 99.8 7.9E-18 1.7E-22 93.8 10.8 79 14-100 1-91 (118)
73 cd04027 C2B_Munc13 C2 domain s 99.8 7.8E-18 1.7E-22 95.6 10.9 85 12-100 1-98 (127)
74 cd04040 C2D_Tricalbin-like C2 99.8 4.9E-18 1.1E-22 94.8 9.9 84 14-100 1-87 (115)
75 cd04049 C2_putative_Elicitor-r 99.8 9.5E-18 2.1E-22 94.8 10.9 85 12-100 1-92 (124)
76 cd08378 C2B_MCTP_PRT_plant C2 99.8 6.6E-18 1.4E-22 95.2 9.8 78 14-100 2-82 (121)
77 KOG0696|consensus 99.8 5.2E-19 1.1E-23 115.7 5.8 88 10-100 178-273 (683)
78 cd04051 C2_SRC2_like C2 domain 99.8 6.8E-18 1.5E-22 95.5 9.3 84 14-100 2-93 (125)
79 cd04017 C2D_Ferlin C2 domain f 99.8 2.2E-17 4.7E-22 94.7 11.2 82 12-97 1-94 (135)
80 cd08400 C2_Ras_p21A1 C2 domain 99.8 2.2E-17 4.8E-22 93.7 10.8 82 12-100 4-88 (126)
81 cd08391 C2A_C2C_Synaptotagmin_ 99.8 2.2E-17 4.7E-22 92.8 10.2 87 12-100 1-93 (121)
82 cd04026 C2_PKC_alpha_gamma C2 99.8 3.9E-17 8.5E-22 93.1 10.6 91 5-100 8-106 (131)
83 cd08690 C2_Freud-1 C2 domain f 99.8 5.4E-17 1.2E-21 94.7 11.3 84 14-100 4-105 (155)
84 cd08676 C2A_Munc13-like C2 dom 99.7 4.4E-17 9.5E-22 95.0 10.7 88 6-100 22-140 (153)
85 KOG1028|consensus 99.7 5.5E-17 1.2E-21 107.5 11.3 96 2-100 157-259 (421)
86 cd08675 C2B_RasGAP C2 domain s 99.7 5.5E-17 1.2E-21 93.3 9.8 83 14-100 1-104 (137)
87 cd04047 C2B_Copine C2 domain s 99.7 9E-17 2E-21 89.1 9.7 83 14-100 3-96 (110)
88 cd08691 C2_NEDL1-like C2 domai 99.7 1.9E-16 4.1E-21 90.9 11.2 83 14-100 3-102 (137)
89 cd08373 C2A_Ferlin C2 domain f 99.7 3.9E-16 8.5E-21 88.6 9.9 69 31-100 11-83 (127)
90 PF00168 C2: C2 domain; Inter 99.7 9.8E-16 2.1E-20 80.7 8.7 80 14-96 1-85 (85)
91 cd04052 C2B_Tricalbin-like C2 99.7 6.7E-16 1.4E-20 85.8 8.2 69 31-100 9-79 (111)
92 cd00275 C2_PLC_like C2 domain 99.7 2.7E-15 5.9E-20 85.0 10.5 85 12-100 2-97 (128)
93 cd08383 C2A_RasGAP C2 domain ( 99.6 1.2E-14 2.6E-19 81.2 9.4 78 14-98 2-84 (117)
94 PLN03008 Phospholipase D delta 99.6 3.7E-15 8E-20 104.1 8.4 67 33-100 75-142 (868)
95 PLN03200 cellulose synthase-in 99.6 4E-15 8.6E-20 111.2 8.4 84 11-100 1979-2066(2102)
96 cd04013 C2_SynGAP_like C2 doma 99.6 4.3E-14 9.4E-19 81.8 9.7 83 10-100 9-97 (146)
97 KOG1028|consensus 99.6 6.2E-14 1.3E-18 93.1 10.4 94 3-99 289-391 (421)
98 smart00239 C2 Protein kinase C 99.5 4.2E-13 9E-18 72.2 11.0 84 14-100 2-90 (101)
99 cd08374 C2F_Ferlin C2 domain s 99.5 4E-13 8.6E-18 76.6 10.4 86 14-100 2-119 (133)
100 cd00030 C2 C2 domain. The C2 d 99.5 2.1E-12 4.5E-17 69.2 10.5 84 14-100 1-87 (102)
101 KOG1011|consensus 99.4 2.1E-13 4.6E-18 93.4 6.0 85 11-99 294-391 (1283)
102 PLN02223 phosphoinositide phos 99.4 1.1E-11 2.3E-16 83.9 10.4 89 12-100 409-506 (537)
103 COG5038 Ca2+-dependent lipid-b 99.4 2.8E-12 6E-17 91.8 7.3 87 11-100 1039-1128(1227)
104 KOG2059|consensus 99.3 6.8E-12 1.5E-16 86.1 7.1 84 11-98 4-89 (800)
105 PLN02952 phosphoinositide phos 99.3 6.1E-11 1.3E-15 81.4 10.7 90 11-100 469-568 (599)
106 COG5038 Ca2+-dependent lipid-b 99.3 2.8E-11 6.2E-16 86.8 9.0 92 8-100 432-525 (1227)
107 PLN02230 phosphoinositide phos 99.3 9.5E-11 2.1E-15 80.4 10.4 89 12-100 469-567 (598)
108 cd08689 C2_fungal_Pkc1p C2 dom 99.3 4.3E-11 9.4E-16 65.2 7.0 82 14-99 1-83 (109)
109 KOG0169|consensus 99.3 7.1E-11 1.5E-15 81.8 9.1 88 13-100 617-713 (746)
110 PLN02222 phosphoinositide phos 99.2 2.1E-10 4.5E-15 78.7 10.7 89 12-100 452-550 (581)
111 KOG1264|consensus 99.2 2.7E-10 5.8E-15 79.9 9.3 85 12-100 1065-1158(1267)
112 PLN02228 Phosphoinositide phos 99.2 6.1E-10 1.3E-14 76.2 10.4 89 12-100 431-530 (567)
113 KOG1328|consensus 99.1 4.4E-11 9.6E-16 82.9 2.6 94 4-100 939-1045(1103)
114 PLN02270 phospholipase D alpha 99.1 1.7E-09 3.6E-14 76.2 9.1 89 11-100 7-113 (808)
115 KOG1031|consensus 98.9 8E-09 1.7E-13 70.9 6.9 86 12-100 3-94 (1169)
116 KOG1326|consensus 98.7 7.3E-09 1.6E-13 73.8 3.2 84 14-100 615-702 (1105)
117 KOG1013|consensus 98.6 1.8E-07 3.8E-12 60.1 5.6 90 5-97 226-324 (362)
118 KOG0905|consensus 98.5 1.8E-07 4E-12 68.2 4.4 87 11-100 1523-1619(1639)
119 PLN02964 phosphatidylserine de 98.4 1E-06 2.2E-11 61.7 5.7 80 12-100 54-135 (644)
120 KOG1013|consensus 98.3 4E-08 8.6E-13 63.0 -1.5 95 2-99 83-187 (362)
121 PLN02352 phospholipase D epsil 98.3 5.6E-06 1.2E-10 58.8 8.1 83 10-100 8-95 (758)
122 KOG2059|consensus 98.1 4.4E-06 9.6E-11 58.4 4.8 69 32-100 148-237 (800)
123 KOG1327|consensus 98.1 1.9E-05 4.2E-10 54.0 7.0 74 22-99 147-231 (529)
124 cd08683 C2_C2cd3 C2 domain fou 97.9 0.00019 4.1E-09 40.9 7.0 67 34-100 32-128 (143)
125 KOG1011|consensus 97.8 0.0002 4.4E-09 50.5 7.5 87 10-100 1123-1221(1283)
126 cd08684 C2A_Tac2-N C2 domain f 97.6 5.1E-05 1.1E-09 40.4 2.2 55 44-100 32-90 (103)
127 KOG1326|consensus 97.6 1.9E-05 4.1E-10 57.1 0.2 67 30-97 222-299 (1105)
128 KOG1328|consensus 97.4 0.00012 2.6E-09 52.0 2.5 37 49-85 179-217 (1103)
129 cd08397 C2_PI3K_class_III C2 d 97.3 0.0023 5E-08 37.8 7.1 67 34-100 29-105 (159)
130 KOG2060|consensus 97.3 0.00018 3.9E-09 47.4 2.1 87 9-97 266-359 (405)
131 cd08695 C2_Dock-B C2 domains f 97.1 0.021 4.6E-07 34.7 10.9 52 48-99 54-111 (189)
132 cd08380 C2_PI3K_like C2 domain 96.9 0.017 3.7E-07 33.8 8.1 85 12-100 8-105 (156)
133 cd08693 C2_PI3K_class_I_beta_d 96.9 0.02 4.4E-07 34.3 8.4 84 12-100 8-118 (173)
134 cd08398 C2_PI3K_class_I_alpha 96.9 0.022 4.8E-07 33.7 8.3 82 12-100 8-104 (158)
135 cd08687 C2_PKN-like C2 domain 96.8 0.007 1.5E-07 32.5 5.3 51 33-84 7-57 (98)
136 KOG3837|consensus 96.8 0.0025 5.4E-08 42.9 4.3 66 35-100 388-471 (523)
137 cd08399 C2_PI3K_class_I_gamma 96.7 0.037 8.1E-07 33.4 8.5 85 12-99 10-119 (178)
138 PF14429 DOCK-C2: C2 domain in 96.7 0.013 2.8E-07 35.3 6.7 53 48-100 60-119 (184)
139 cd08694 C2_Dock-A C2 domains f 96.7 0.062 1.3E-06 32.9 10.9 52 48-99 54-113 (196)
140 PF00792 PI3K_C2: Phosphoinosi 96.5 0.013 2.8E-07 33.8 5.6 51 50-100 23-83 (142)
141 cd04012 C2A_PI3K_class_II C2 d 96.5 0.025 5.4E-07 33.8 6.9 87 11-100 7-117 (171)
142 PF12416 DUF3668: Cep120 prote 95.9 0.17 3.7E-06 33.6 8.7 80 14-100 2-92 (340)
143 cd08679 C2_DOCK180_related C2 95.8 0.089 1.9E-06 31.6 6.6 50 51-100 56-114 (178)
144 PF15625 CC2D2AN-C2: CC2D2A N- 95.8 0.14 3E-06 30.5 7.4 66 34-100 36-104 (168)
145 KOG1265|consensus 95.7 0.049 1.1E-06 40.2 5.9 78 12-100 703-792 (1189)
146 PF15627 CEP76-C2: CEP76 C2 do 95.6 0.19 4E-06 29.7 7.3 89 8-98 5-111 (156)
147 cd08696 C2_Dock-C C2 domains f 95.6 0.11 2.3E-06 31.4 6.4 52 48-99 55-116 (179)
148 cd08697 C2_Dock-D C2 domains f 95.5 0.15 3.3E-06 31.0 6.8 52 48-99 57-121 (185)
149 KOG1452|consensus 95.2 0.14 3E-06 33.8 6.3 79 10-90 49-129 (442)
150 KOG1327|consensus 93.7 0.12 2.6E-06 36.1 3.8 52 49-100 43-100 (529)
151 smart00142 PI3K_C2 Phosphoinos 91.1 1 2.3E-05 24.4 4.8 50 35-84 32-91 (100)
152 PF10358 NT-C2: N-terminal C2 90.9 1.9 4.1E-05 24.6 8.8 83 11-100 6-102 (143)
153 KOG0694|consensus 87.7 0.21 4.5E-06 36.0 0.5 53 34-86 27-79 (694)
154 PF11618 DUF3250: Protein of u 83.9 4.4 9.6E-05 22.4 4.5 50 49-100 13-71 (107)
155 PF07162 B9-C2: Ciliary basal 79.9 10 0.00022 22.6 9.7 42 58-99 55-101 (168)
156 PF01060 DUF290: Transthyretin 75.7 6.5 0.00014 20.3 3.3 26 72-97 10-35 (80)
157 KOG0906|consensus 73.9 4.2 9.1E-05 29.8 2.9 50 50-99 67-121 (843)
158 KOG1329|consensus 64.2 7 0.00015 29.5 2.4 64 35-98 138-203 (887)
159 KOG4269|consensus 63.5 4.3 9.3E-05 30.7 1.3 48 35-82 775-826 (1112)
160 KOG4028|consensus 45.4 33 0.00072 19.9 2.7 22 74-95 74-95 (175)
161 KOG4027|consensus 42.2 78 0.0017 19.1 5.1 25 75-99 84-108 (187)
162 PF15084 DUF4550: Domain of un 36.7 58 0.0013 17.9 2.7 26 59-84 51-83 (99)
163 KOG0904|consensus 28.9 1.9E+02 0.0041 22.7 4.9 34 49-82 382-420 (1076)
164 COG5075 Uncharacterized conser 27.5 66 0.0014 20.9 2.2 22 1-22 231-252 (305)
165 KOG2419|consensus 27.5 25 0.00054 26.1 0.4 30 35-65 305-334 (975)
166 PF14909 SPATA6: Spermatogenes 22.5 1.8E+02 0.0039 17.1 8.7 62 34-97 19-94 (140)
No 1
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.91 E-value=3.5e-23 Score=115.38 Aligned_cols=92 Identities=21% Similarity=0.210 Sum_probs=80.0
Q ss_pred eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC---cCceeeeeecCCCCCeeceEEEEEeC----CCC
Q psy16330 3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY---KNPKTTRVVKNTYQPKWNEEFTVLVS----PYS 74 (101)
Q Consensus 3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~---~~~~~T~~~~~~~~P~w~e~~~~~~~----~~~ 74 (101)
+...|.+..++|.|+|.+| +|+. .+.+||||++++.. ..+++|++.+++.||.|||+|.|.++ +..
T Consensus 5 fsL~Y~~~~~~L~V~vikA~~L~~------~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~ 78 (118)
T cd08677 5 YSLSYDKQKAELHVNILEAENISV------DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDG 78 (118)
T ss_pred EEEEEcCcCCEEEEEEEEecCCCC------CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCc
Confidence 5668999999999999999 5652 25589999999842 23579999999999999999999997 567
Q ss_pred EEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 75 IILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 75 ~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
.|.|+|||+|.++++++||++.+++.
T Consensus 79 tL~~~V~d~Drfs~~d~IG~v~l~l~ 104 (118)
T cd08677 79 TLTLTLRCCDRFSRHSTLGELRLKLA 104 (118)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEccc
Confidence 89999999999999999999999875
No 2
>KOG1030|consensus
Probab=99.89 E-value=2.8e-22 Score=116.20 Aligned_cols=85 Identities=29% Similarity=0.421 Sum_probs=75.6
Q ss_pred cceEEEEEEee-EeCCCCCCCCC-CCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCC
Q psy16330 11 VLQLLQLVECA-HLRRGGQGGGL-LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFR 87 (101)
Q Consensus 11 ~~~l~v~i~~a-~l~~~~~~~~~-~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~ 87 (101)
.+-|.|.+..+ +|.. .++ +++||||.+.+++++ .+|+++.++.||.|||.++|.+. +...|+++|||+|.++
T Consensus 5 vGLL~v~v~~g~~L~~----rD~~~sSDPyVVl~lg~q~-lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs 79 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAI----RDFLGSSDPYVVLELGNQK-LKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS 79 (168)
T ss_pred ceEEEEEEEeecCeee----eccccCCCCeEEEEECCee-eeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC
Confidence 45688888888 6654 344 889999999999884 99999999999999999999998 7889999999999999
Q ss_pred CCCeeEEEEEECC
Q psy16330 88 RDCTIGEKRLNTS 100 (101)
Q Consensus 88 ~~~~iG~~~~~l~ 100 (101)
.||++|.++++|.
T Consensus 80 ~dD~mG~A~I~l~ 92 (168)
T KOG1030|consen 80 SDDFMGEATIPLK 92 (168)
T ss_pred cccccceeeeccH
Confidence 9999999999874
No 3
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.88 E-value=2.4e-21 Score=109.78 Aligned_cols=97 Identities=21% Similarity=0.347 Sum_probs=81.8
Q ss_pred ceecccccccceEEEEEEee-EeCCCCCCCCC-CCCCcEEEEEEC--C--cCceeeeeecCCCCCeeceEEEEEeC----
Q psy16330 2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGL-LKPNPYIELYVD--Y--KNPKTTRVVKNTYQPKWNEEFTVLVS---- 71 (101)
Q Consensus 2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~-~~~dpy~~v~~~--~--~~~~~T~~~~~~~~P~w~e~~~~~~~---- 71 (101)
.+.-.|......|.|+|.+| +|+.. +.. +.+|||+++++. . ..+++|++++++.||.|||.|.|.+.
T Consensus 5 ~~sl~y~~~~~~L~V~vi~a~~L~~~---d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l 81 (125)
T cd08393 5 QFALDYDPKLRELHVHVIQCQDLAAA---DPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREEL 81 (125)
T ss_pred EEEEEEECCCCEEEEEEEEeCCCCCc---CCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHh
Confidence 45678999999999999999 78763 433 678999999873 2 23479999999999999999999986
Q ss_pred CCCEEEEEEEeCCCCCCCCeeEEEEEECCC
Q psy16330 72 PYSIILFRLLDHRTFRRDCTIGEKRLNTST 101 (101)
Q Consensus 72 ~~~~l~~~v~~~~~~~~~~~iG~~~~~l~~ 101 (101)
....|.|+|||++..+++++||++.++|..
T Consensus 82 ~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~ 111 (125)
T cd08393 82 PTRVLNLSVWHRDSLGRNSFLGEVEVDLGS 111 (125)
T ss_pred CCCEEEEEEEeCCCCCCCcEeEEEEEecCc
Confidence 356899999999999999999999999863
No 4
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.88 E-value=2.3e-21 Score=109.49 Aligned_cols=94 Identities=20% Similarity=0.256 Sum_probs=78.5
Q ss_pred ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEe-C----
Q psy16330 2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLV-S---- 71 (101)
Q Consensus 2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~-~---- 71 (101)
.+...|. .+.|.|.|.+| +|+.. + .+.+||||++++.. ..+++|++++++.||.|+|+|.|.+ +
T Consensus 5 ~~~l~y~--~~~L~V~Vi~A~~L~~~---~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l 78 (122)
T cd08381 5 KLSISYK--NGTLFVMVMHAKNLPLL---D-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDL 78 (122)
T ss_pred EEEEEEe--CCEEEEEEEEeeCCCCC---C-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHh
Confidence 3455677 68899999999 68773 4 67899999998852 2358999999999999999999987 3
Q ss_pred CCCEEEEEEEeCCCCCCCCeeEEEEEECCC
Q psy16330 72 PYSIILFRLLDHRTFRRDCTIGEKRLNTST 101 (101)
Q Consensus 72 ~~~~l~~~v~~~~~~~~~~~iG~~~~~l~~ 101 (101)
....|.|+|||++.++++++||++.++|+.
T Consensus 79 ~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~ 108 (122)
T cd08381 79 QQRVLQVSVWSHDSLVENEFLGGVCIPLKK 108 (122)
T ss_pred CCCEEEEEEEeCCCCcCCcEEEEEEEeccc
Confidence 456899999999999999999999999863
No 5
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.88 E-value=2.9e-21 Score=109.81 Aligned_cols=97 Identities=21% Similarity=0.269 Sum_probs=81.6
Q ss_pred ceecccccccceEEEEEEee-EeCCCCCCCCC-CCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC----
Q psy16330 2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGL-LKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS---- 71 (101)
Q Consensus 2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~-~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~---- 71 (101)
.+.-.|....++|.|.|.+| +|+.. +.. +.+||||++++.. ..+++|++++++.+|.|||+|.|.++
T Consensus 5 ~~sl~Y~~~~~~L~V~V~~a~nL~~~---d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l 81 (128)
T cd08392 5 EFALHYNFRTSCLEITIKACRNLAYG---DEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLL 81 (128)
T ss_pred EEEEEEeCCCCEEEEEEEecCCCCcc---CCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHh
Confidence 35567999999999999999 78763 433 7889999998742 22579999999999999999999987
Q ss_pred CCCEEEEEEEeCCCCCCCCeeEEEEEECCC
Q psy16330 72 PYSIILFRLLDHRTFRRDCTIGEKRLNTST 101 (101)
Q Consensus 72 ~~~~l~~~v~~~~~~~~~~~iG~~~~~l~~ 101 (101)
....|.+.||+.+.++++++||++.++|+.
T Consensus 82 ~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~ 111 (128)
T cd08392 82 SSRQLQVSVWHSRTLKRRVFLGEVLIPLAD 111 (128)
T ss_pred CCcEEEEEEEeCCCCcCcceEEEEEEEcCC
Confidence 356999999999998899999999999863
No 6
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.87 E-value=7.3e-21 Score=107.61 Aligned_cols=97 Identities=24% Similarity=0.290 Sum_probs=82.1
Q ss_pred ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--CcCceeeeeecCCCCCeeceEEEEEeC----CCC
Q psy16330 2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVLVS----PYS 74 (101)
Q Consensus 2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~~~~~~T~~~~~~~~P~w~e~~~~~~~----~~~ 74 (101)
.+...|.+..+.|.|+|..| +|+. .+..+.+|||+++++. +...++|++++++.+|.|+|.|.|.++ ...
T Consensus 6 ~~sl~y~~~~~~L~V~v~~a~~L~~---~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~ 82 (124)
T cd08387 6 HFSLEYDKDMGILNVKLIQARNLQP---RDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKR 82 (124)
T ss_pred EEEEEECCCCCEEEEEEEEeeCCCC---CCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCC
Confidence 35567899999999999999 6876 3455779999999983 344689999999999999999999987 246
Q ss_pred EEEEEEEeCCCCCCCCeeEEEEEECCC
Q psy16330 75 IILFRLLDHRTFRRDCTIGEKRLNTST 101 (101)
Q Consensus 75 ~l~~~v~~~~~~~~~~~iG~~~~~l~~ 101 (101)
.|.|+|||.+.++++++||++.++++.
T Consensus 83 ~l~i~V~d~~~~~~~~~iG~~~i~l~~ 109 (124)
T cd08387 83 TLEVLLYDFDQFSRDECIGVVELPLAE 109 (124)
T ss_pred EEEEEEEECCCCCCCceeEEEEEeccc
Confidence 899999999999899999999998863
No 7
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.87 E-value=1e-20 Score=107.25 Aligned_cols=97 Identities=21% Similarity=0.323 Sum_probs=80.8
Q ss_pred ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--C--cCceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330 2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--Y--KNPKTTRVVKNTYQPKWNEEFTVLVS----P 72 (101)
Q Consensus 2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~--~~~~~T~~~~~~~~P~w~e~~~~~~~----~ 72 (101)
.+.-.|.+..+.|.|.|.+| +|+.. ....+.+||||++++. + ..+++|++++++.+|.|+|+|.|.++ .
T Consensus 5 ~~sl~y~~~~~~L~V~Vi~a~~L~~~--~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~ 82 (125)
T cd04029 5 LFSLSYDYKTQSLNVHVKECRNLAYG--DEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLE 82 (125)
T ss_pred EEEEEEECCCCeEEEEEEEecCCCcc--CCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhC
Confidence 45678999999999999999 67652 1224679999999874 2 23579999999999999999999986 3
Q ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 73 YSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
...|.|+||+++..+++++||++.+++.
T Consensus 83 ~~~L~~~V~d~~~~~~~~~lG~~~i~l~ 110 (125)
T cd04029 83 TRTLQLSVWHYDRFGRNTFLGEVEIPLD 110 (125)
T ss_pred CCEEEEEEEECCCCCCCcEEEEEEEeCC
Confidence 5689999999999999999999999986
No 8
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.87 E-value=7.1e-21 Score=107.13 Aligned_cols=84 Identities=23% Similarity=0.336 Sum_probs=72.7
Q ss_pred ceEEEEEEeeE-eCCCCCCCCCCCCCcEEEEEECCcCceeeeeecC-CCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCC
Q psy16330 12 LQLLQLVECAH-LRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKN-TYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRR 88 (101)
Q Consensus 12 ~~l~v~i~~a~-l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~ 88 (101)
+.|.|+|.+|+ +++ .+ .+.+||||.+.+++. +.+|+++.+ +.||.|||+|.|.+. ....|.|+|||.+.+++
T Consensus 2 g~L~v~v~~Ak~l~~---~~-~g~sDPYv~i~lg~~-~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~ 76 (121)
T cd04016 2 GRLSITVVQAKLVKN---YG-LTRMDPYCRIRVGHA-VYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTM 76 (121)
T ss_pred cEEEEEEEEccCCCc---CC-CCCCCceEEEEECCE-EEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcC
Confidence 57999999995 444 23 688999999999887 479999876 799999999999997 45689999999999999
Q ss_pred CCeeEEEEEECC
Q psy16330 89 DCTIGEKRLNTS 100 (101)
Q Consensus 89 ~~~iG~~~~~l~ 100 (101)
|++||.+.+++.
T Consensus 77 dd~iG~~~i~l~ 88 (121)
T cd04016 77 DERIAWTHITIP 88 (121)
T ss_pred CceEEEEEEECc
Confidence 999999999884
No 9
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.87 E-value=1e-20 Score=107.60 Aligned_cols=97 Identities=25% Similarity=0.306 Sum_probs=80.2
Q ss_pred ceecccccccceEEEEEEee-EeCCCCCCCCC-CCCCcEEEEEEC--CcCceeeeeecCCCCCeeceEEEE-EeC----C
Q psy16330 2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGL-LKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTV-LVS----P 72 (101)
Q Consensus 2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~-~~~dpy~~v~~~--~~~~~~T~~~~~~~~P~w~e~~~~-~~~----~ 72 (101)
.+...|.....+|.|+|.+| +|+.. +.. +.+||||++.+. ...+.+|++++++.||.|+|+|.| .++ .
T Consensus 6 ~~~l~y~~~~~~L~V~Vi~a~~L~~~---~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~ 82 (128)
T cd08388 6 FFSLRYNSEKKALLVNIIECRDLPAM---DEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQ 82 (128)
T ss_pred EEEEEEECCCCEEEEEEEEeECCCCC---CCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhC
Confidence 35567999999999999999 68763 443 778999999874 233479999999999999999998 454 3
Q ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEECCC
Q psy16330 73 YSIILFRLLDHRTFRRDCTIGEKRLNTST 101 (101)
Q Consensus 73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~~ 101 (101)
...|.++||+++.++++++||++.++|+.
T Consensus 83 ~~~L~~~V~d~d~~~~d~~lG~~~i~L~~ 111 (128)
T cd08388 83 DLSLHFAVLSFDRYSRDDVIGEVVCPLAG 111 (128)
T ss_pred CCEEEEEEEEcCCCCCCceeEEEEEeccc
Confidence 45799999999999999999999999863
No 10
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.87 E-value=5.7e-21 Score=108.01 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=81.2
Q ss_pred eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--C---cCceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330 3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--Y---KNPKTTRVVKNTYQPKWNEEFTVLVS----P 72 (101)
Q Consensus 3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~---~~~~~T~~~~~~~~P~w~e~~~~~~~----~ 72 (101)
+.-.|.+..++|.|.|.+| +|+.. +..+.+||||++++- . ..+++|++++++.||.|||+|.|.++ .
T Consensus 5 ~sL~Y~~~~~~L~V~V~~arnL~~~---~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 5 IGLRYDSGDSSLVISVEQLRNLSAL---SIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred EEEEECCCCCEEEEEEeEecCCccc---ccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 4568999999999999999 78763 444678999999863 2 23589999999999999999999987 4
Q ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 73 YSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
...|.|+||+.+..+++++||++.++|.
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~ 109 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLA 109 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhh
Confidence 5799999999999999999999999975
No 11
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.87 E-value=1.3e-20 Score=106.59 Aligned_cols=97 Identities=28% Similarity=0.306 Sum_probs=81.7
Q ss_pred ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC--cCceeeeeecCCCCCeeceEEEEEeC----CCC
Q psy16330 2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVS----PYS 74 (101)
Q Consensus 2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~----~~~ 74 (101)
-+...|....++|.|+|.+| +|+. .+..+.+|||+++.+.. ..+++|++++++.+|.|+|.|.|.+. ...
T Consensus 6 ~~~l~y~~~~~~L~V~v~~a~~L~~---~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~ 82 (124)
T cd08385 6 QFSLDYDFQSNQLTVGIIQAADLPA---MDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNK 82 (124)
T ss_pred EEEEEEeCCCCEEEEEEEEeeCCCC---ccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCC
Confidence 34568888999999999999 6876 34557789999998742 23579999999999999999999986 246
Q ss_pred EEEEEEEeCCCCCCCCeeEEEEEECCC
Q psy16330 75 IILFRLLDHRTFRRDCTIGEKRLNTST 101 (101)
Q Consensus 75 ~l~~~v~~~~~~~~~~~iG~~~~~l~~ 101 (101)
.|.|+|||++.++++++||++.++++.
T Consensus 83 ~l~~~V~d~d~~~~~~~lG~~~i~l~~ 109 (124)
T cd08385 83 TLVFSVYDFDRFSKHDLIGEVRVPLLT 109 (124)
T ss_pred EEEEEEEeCCCCCCCceeEEEEEecCc
Confidence 899999999999899999999999863
No 12
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.86 E-value=7.9e-21 Score=109.09 Aligned_cols=98 Identities=20% Similarity=0.277 Sum_probs=80.6
Q ss_pred ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc----CceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330 2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVS----P 72 (101)
Q Consensus 2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~----~~~~T~~~~~~~~P~w~e~~~~~~~----~ 72 (101)
.+.-.|.+..++|.|.|.+| +|+.... +..+.+||||++++... .+++|++.+++.||+|||.|.|.++ .
T Consensus 5 ~~sL~Y~~~~~~L~V~V~karnL~~~d~-~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~ 83 (138)
T cd08407 5 LLSISYLPAANRLLVVVIKAKNLHSDQL-KLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLA 83 (138)
T ss_pred EEEEEEeCCCCeEEEEEEEecCCCcccc-CCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhC
Confidence 35668999999999999999 7876311 12345899999987432 2479999999999999999999997 3
Q ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 73 YSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
...|.|+||+.+.++++++||++.+++.
T Consensus 84 ~~~L~~~V~d~d~~~~~d~iG~v~lg~~ 111 (138)
T cd08407 84 ASSVELEVLNQDSPGQSLPLGRCSLGLH 111 (138)
T ss_pred ccEEEEEEEeCCCCcCcceeceEEecCc
Confidence 6789999999999999999999998764
No 13
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.86 E-value=1.2e-20 Score=108.21 Aligned_cols=95 Identities=18% Similarity=0.280 Sum_probs=80.4
Q ss_pred ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--Cc--CceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330 2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--YK--NPKTTRVVKNTYQPKWNEEFTVLVS----P 72 (101)
Q Consensus 2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~~--~~~~T~~~~~~~~P~w~e~~~~~~~----~ 72 (101)
.+...|.+...+|.|+|.+| +|+. .+..+.+||||++++. +. .+.+|++++++.||.|||+|.|.++ .
T Consensus 5 ~~sL~Y~~~~~~L~V~Vi~A~nL~~---~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~ 81 (136)
T cd08406 5 LLSLSYLPTAERLTVVVVKARNLVW---DNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQ 81 (136)
T ss_pred EEEEEEcCCCCEEEEEEEEeeCCCC---ccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhC
Confidence 45667999999999999999 6876 3455789999999873 22 2468999999999999999999987 4
Q ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEEC
Q psy16330 73 YSIILFRLLDHRTFRRDCTIGEKRLNT 99 (101)
Q Consensus 73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l 99 (101)
...|.|+||+++..+++++||++.++.
T Consensus 82 ~~~l~~~V~~~d~~~~~~~iG~v~lg~ 108 (136)
T cd08406 82 DLSLRVTVAESTEDGKTPNVGHVIIGP 108 (136)
T ss_pred CcEEEEEEEeCCCCCCCCeeEEEEECC
Confidence 678999999999999999999998864
No 14
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.86 E-value=7.8e-21 Score=107.61 Aligned_cols=84 Identities=27% Similarity=0.355 Sum_probs=72.3
Q ss_pred eEEEEEEee-E---eCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCC
Q psy16330 13 QLLQLVECA-H---LRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFR 87 (101)
Q Consensus 13 ~l~v~i~~a-~---l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~ 87 (101)
.|+|+|.+| + |+. .+..|.+||||.+.+++. +.||++++++.||.|||+|.|.+. +...|.|+|||.+..+
T Consensus 1 ~L~v~v~~A~~~~~l~~---~d~~g~sDPYv~i~~g~~-~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRA---KDGRGSTDAYCVAKYGPK-WVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccc---cccCCCCCeeEEEEECCE-EeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcc
Confidence 378999999 5 544 456688999999999877 589999999999999999999986 5678999999998773
Q ss_pred ------CCCeeEEEEEECC
Q psy16330 88 ------RDCTIGEKRLNTS 100 (101)
Q Consensus 88 ------~~~~iG~~~~~l~ 100 (101)
.|++||++.++++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~ 95 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLS 95 (126)
T ss_pred ccccCCCCceEEEEEEEHH
Confidence 8999999999875
No 15
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.86 E-value=2.7e-20 Score=107.65 Aligned_cols=90 Identities=21% Similarity=0.279 Sum_probs=74.3
Q ss_pred ccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC--c--CceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEE-e
Q psy16330 10 SVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY--K--NPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLL-D 82 (101)
Q Consensus 10 ~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~--~--~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~-~ 82 (101)
..++|.|.|.+| +|+.. .+..+.+||||++++.. . .+++|++++++.||.|||+|.|.+. ....|.++|| +
T Consensus 27 ~~~~L~V~Vi~ArnL~~~--~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d 104 (146)
T cd04028 27 KKGQLEVEVIRARGLVQK--PGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGD 104 (146)
T ss_pred CCCEEEEEEEEeeCCCcc--cCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeC
Confidence 357899999999 67652 12346789999999842 2 2589999999999999999999997 6779999999 5
Q ss_pred CCCCCCCCeeEEEEEECCC
Q psy16330 83 HRTFRRDCTIGEKRLNTST 101 (101)
Q Consensus 83 ~~~~~~~~~iG~~~~~l~~ 101 (101)
++.++++++||++.++|+.
T Consensus 105 ~~~~~~~~~iG~~~i~L~~ 123 (146)
T cd04028 105 YGRMDKKVFMGVAQILLDD 123 (146)
T ss_pred CCCCCCCceEEEEEEEccc
Confidence 7788889999999999863
No 16
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.85 E-value=2.7e-20 Score=105.54 Aligned_cols=87 Identities=21% Similarity=0.279 Sum_probs=75.3
Q ss_pred cccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC---CCCEEEEEEEeCC
Q psy16330 9 SSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS---PYSIILFRLLDHR 84 (101)
Q Consensus 9 ~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~---~~~~l~~~v~~~~ 84 (101)
+..++|.|+|.+| +|+. +..+.+|||+++++++. +++|++++++.+|.|+|+|.|... ....|.|+|||++
T Consensus 25 ~~~~~L~V~V~~A~~L~~----d~~g~~DPYVkV~~~~~-~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 25 RGLATLTVTVLRATGLWG----DYFTSTDGYVKVFFGGQ-EKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred CCcEEEEEEEEECCCCCc----CcCCCCCeEEEEEECCc-cccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 4568999999999 5754 34577899999999877 699999999999999999998742 4679999999999
Q ss_pred CCCCCCeeEEEEEECC
Q psy16330 85 TFRRDCTIGEKRLNTS 100 (101)
Q Consensus 85 ~~~~~~~iG~~~~~l~ 100 (101)
..++|++||++.++|.
T Consensus 100 ~~s~dd~IG~~~i~l~ 115 (127)
T cd04032 100 NGWDDDLLGTCSVVPE 115 (127)
T ss_pred CCCCCCeeEEEEEEec
Confidence 9999999999999875
No 17
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.85 E-value=2.1e-20 Score=105.06 Aligned_cols=84 Identities=20% Similarity=0.222 Sum_probs=68.8
Q ss_pred eEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----c--CceeeeeecCCCCCeeceEEEEEeCC-----CCEEEEEE
Q psy16330 13 QLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----K--NPKTTRVVKNTYQPKWNEEFTVLVSP-----YSIILFRL 80 (101)
Q Consensus 13 ~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~--~~~~T~~~~~~~~P~w~e~~~~~~~~-----~~~l~~~v 80 (101)
+|.|+|.+| +|+.. + .|.+|||+++++-+ . .+++|+++.++.||.|||+|.|.+.. ...|.|.+
T Consensus 1 kL~V~Vi~A~~L~~~---d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V 76 (120)
T cd08395 1 KVTVKVVAANDLKWQ---T-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICV 76 (120)
T ss_pred CEEEEEEECcCCCcc---c-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEE
Confidence 478999999 68762 3 47899999999732 2 24689999999999999999999862 23689999
Q ss_pred EeCCCCCCCCeeEEEEEECC
Q psy16330 81 LDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 81 ~~~~~~~~~~~iG~~~~~l~ 100 (101)
||++..+++++||++.++++
T Consensus 77 ~D~d~~~~dd~IG~~~l~l~ 96 (120)
T cd08395 77 KDYCFARDDRLVGVTVLQLR 96 (120)
T ss_pred EEecccCCCCEEEEEEEEHH
Confidence 99997778999999999875
No 18
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.85 E-value=2.7e-20 Score=104.89 Aligned_cols=85 Identities=18% Similarity=0.257 Sum_probs=74.2
Q ss_pred eEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCCCC
Q psy16330 13 QLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRDC 90 (101)
Q Consensus 13 ~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~~~ 90 (101)
+|.|+|..| +|+. .+..+.+|||+++.+++...++|+++.++.+|.|+|.|.|.+. ....|.|++||++..++++
T Consensus 1 ~L~v~v~~a~~L~~---~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~ 77 (121)
T cd04042 1 QLDIHLKEGRNLAA---RDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDD 77 (121)
T ss_pred CeEEEEEEeeCCCC---cCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCc
Confidence 578999999 6876 3455789999999998755689999999999999999999987 4679999999999998999
Q ss_pred eeEEEEEECC
Q psy16330 91 TIGEKRLNTS 100 (101)
Q Consensus 91 ~iG~~~~~l~ 100 (101)
+||++.++++
T Consensus 78 ~iG~~~~~l~ 87 (121)
T cd04042 78 FMGSAFVDLS 87 (121)
T ss_pred ceEEEEEEHH
Confidence 9999999874
No 19
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.85 E-value=8e-20 Score=103.13 Aligned_cols=97 Identities=20% Similarity=0.319 Sum_probs=82.0
Q ss_pred CceecccccccceEEEEEEee-EeCCCCCCC-CCCCCCcEEEEEEC--CcCceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330 1 MFLLQDYFSSVLQLLQLVECA-HLRRGGQGG-GLLKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVLVS----P 72 (101)
Q Consensus 1 ~~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~-~~~~~dpy~~v~~~--~~~~~~T~~~~~~~~P~w~e~~~~~~~----~ 72 (101)
|.+..+|.+..++|.|.|..| +|+.. + ..+.+|||+.+++. +....+|++++++.+|.|+|.|.|.+. .
T Consensus 3 l~~~l~y~~~~~~L~V~v~~a~~L~~~---~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~ 79 (123)
T cd08390 3 LWFSVQYDLEEEQLTVSLIKARNLPPR---TKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQ 79 (123)
T ss_pred EEEEEEECCCCCEEEEEEEEecCCCCc---cCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhc
Confidence 356778999999999999999 68763 3 45778999999873 333578999999999999999999987 2
Q ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 73 YSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
...|.|.||+.+..+++++||++.++|+
T Consensus 80 ~~~l~i~v~d~~~~~~~~~iG~~~i~L~ 107 (123)
T cd08390 80 RRTLRLSVYDVDRFSRHCIIGHVLFPLK 107 (123)
T ss_pred ccEEEEEEEECCcCCCCcEEEEEEEecc
Confidence 4589999999998888999999999986
No 20
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.85 E-value=4.4e-20 Score=104.43 Aligned_cols=95 Identities=23% Similarity=0.274 Sum_probs=79.7
Q ss_pred eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC-----C
Q psy16330 3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS-----P 72 (101)
Q Consensus 3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~-----~ 72 (101)
+-..|.+..++|.|+|.+| +|+. .+..+.+|||+++.+.+ ..+++|++++++.+|.|+|.|.|.+. .
T Consensus 7 ~~l~~~~~~~~L~V~vi~a~~L~~---~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~ 83 (125)
T cd04031 7 IQLWYDKVTSQLIVTVLQARDLPP---RDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLK 83 (125)
T ss_pred EEEEEeCCCCEEEEEEEEecCCCC---cCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhC
Confidence 4456888899999999999 6876 34557899999998853 23579999999999999999999853 2
Q ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 73 YSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
...|.|+|||.+..+.+++||++.++|+
T Consensus 84 ~~~l~~~V~d~~~~~~~~~iG~~~i~l~ 111 (125)
T cd04031 84 ERTLEVTVWDYDRDGENDFLGEVVIDLA 111 (125)
T ss_pred CCEEEEEEEeCCCCCCCcEeeEEEEecc
Confidence 4689999999999888999999999986
No 21
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.85 E-value=2.8e-20 Score=105.55 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=71.2
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCC-------CCEEEEEEEeCCC
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-------YSIILFRLLDHRT 85 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~-------~~~l~~~v~~~~~ 85 (101)
+.|+|.+| +|+. .+..+.+||||.+.+++. +++|++++++.||.|+|.|.|.+.. ...|.+++|+++.
T Consensus 1 ~~V~V~~A~~L~~---~d~~g~~dpYv~v~l~~~-~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~ 76 (126)
T cd08682 1 VQVTVLQARGLLC---KGKSGTNDAYVIIQLGKE-KYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL 76 (126)
T ss_pred CEEEEEECcCCcC---CCCCcCCCceEEEEECCe-eeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc
Confidence 46888999 6876 345578999999999876 5899999999999999999998863 4589999999999
Q ss_pred CCCCCeeEEEEEECC
Q psy16330 86 FRRDCTIGEKRLNTS 100 (101)
Q Consensus 86 ~~~~~~iG~~~~~l~ 100 (101)
+++|++||++.++++
T Consensus 77 ~~~d~~iG~~~i~l~ 91 (126)
T cd08682 77 LGLDKFLGQVSIPLN 91 (126)
T ss_pred cCCCceeEEEEEEHH
Confidence 888999999999874
No 22
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.85 E-value=3.9e-20 Score=102.42 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=71.4
Q ss_pred ceEEEEEEee-EeCCCCCCC-CCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC---CCCEEEEEEEeCCCC
Q psy16330 12 LQLLQLVECA-HLRRGGQGG-GLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS---PYSIILFRLLDHRTF 86 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~~-~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~---~~~~l~~~v~~~~~~ 86 (101)
+.|.|+|.+| +|+...... ..+.+|||+++.+++. +++|++++++.+|.|+|.|.|.+. ....|.|+|||++..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~-~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~ 79 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRR-VFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF 79 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCE-eEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCC
Confidence 4688999999 687631111 1134799999999765 589999999999999999999885 234799999999999
Q ss_pred CCCCeeEEEEEECC
Q psy16330 87 RRDCTIGEKRLNTS 100 (101)
Q Consensus 87 ~~~~~iG~~~~~l~ 100 (101)
++|++||++.++|+
T Consensus 80 ~~dd~IG~~~l~L~ 93 (108)
T cd04039 80 SFNDYVATGSLSVQ 93 (108)
T ss_pred CCCcceEEEEEEHH
Confidence 99999999999875
No 23
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.85 E-value=8.4e-20 Score=104.38 Aligned_cols=95 Identities=21% Similarity=0.261 Sum_probs=80.7
Q ss_pred eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC----CC
Q psy16330 3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS----PY 73 (101)
Q Consensus 3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~----~~ 73 (101)
+...|....+.|.|+|.+| +|+. .+..+.+||||++.+.+ ..+++|++++++.+|.|+|+|.|.+. ..
T Consensus 4 ~~l~y~~~~~~L~V~Vi~a~~L~~---~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~ 80 (133)
T cd08384 4 VSLMYNTQRRGLIVGIIRCVNLAA---MDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK 80 (133)
T ss_pred EEEEEcCCCCEEEEEEEEEcCCCC---cCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence 4567999999999999999 6876 35557899999998742 23589999999999999999999986 24
Q ss_pred CEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 74 SIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 74 ~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
..|.|+|||.+..+++++||++.+++.
T Consensus 81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~ 107 (133)
T cd08384 81 KTLEITVWDKDIGKSNDYIGGLQLGIN 107 (133)
T ss_pred CEEEEEEEeCCCCCCccEEEEEEEecC
Confidence 689999999998888999999999875
No 24
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.85 E-value=4.2e-20 Score=106.02 Aligned_cols=96 Identities=27% Similarity=0.331 Sum_probs=80.5
Q ss_pred ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC--c--CceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330 2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY--K--NPKTTRVVKNTYQPKWNEEFTVLVS----P 72 (101)
Q Consensus 2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~--~--~~~~T~~~~~~~~P~w~e~~~~~~~----~ 72 (101)
.+...|......|.|+|.+| +|+. .+..+.+||||++.+.. . .+++|++++++.+|.|+|+|.|.++ .
T Consensus 5 ~~~l~y~~~~~~L~V~vi~a~~L~~---~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~ 81 (136)
T cd08404 5 LLSLCYQPTTNRLTVVVLKARHLPK---MDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELE 81 (136)
T ss_pred EEEEEEeCCCCeEEEEEEEeeCCCc---cccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhC
Confidence 45567888899999999999 6876 35567899999998742 2 2478999999999999999999987 3
Q ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 73 YSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
...|.|+|||++.++++++||++.+++.
T Consensus 82 ~~~l~~~v~d~d~~~~~~~iG~~~~~~~ 109 (136)
T cd08404 82 DISVEFLVLDSDRVTKNEVIGRLVLGPK 109 (136)
T ss_pred CCEEEEEEEECCCCCCCccEEEEEECCc
Confidence 5579999999999999999999999875
No 25
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.84 E-value=5.9e-20 Score=105.45 Aligned_cols=89 Identities=22% Similarity=0.423 Sum_probs=77.4
Q ss_pred ccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCC
Q psy16330 8 FSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHR 84 (101)
Q Consensus 8 ~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~ 84 (101)
....+.|.|+|..| +|+. .+..+.+||||++.+++. .++|++++++.||.|++.|.|.+. ....|.|+|||.+
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~---~d~~g~~DPYv~v~~~~~-~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d 86 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKP---CNSNGKSDPYCEVSMGSQ-EHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD 86 (136)
T ss_pred CCCcEEEEEEEEEeeCCCC---CCCCCCcCcEEEEEECCE-eeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC
Confidence 46678999999999 6876 355688999999999766 599999999999999999999986 3568999999999
Q ss_pred CCCCCCeeEEEEEECC
Q psy16330 85 TFRRDCTIGEKRLNTS 100 (101)
Q Consensus 85 ~~~~~~~iG~~~~~l~ 100 (101)
..+.|++||++.+++.
T Consensus 87 ~~~~d~~lG~~~i~l~ 102 (136)
T cd08375 87 FFSPDDFLGRTEIRVA 102 (136)
T ss_pred CCCCCCeeEEEEEEHH
Confidence 9888999999999874
No 26
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.84 E-value=9.7e-20 Score=103.08 Aligned_cols=97 Identities=23% Similarity=0.306 Sum_probs=80.5
Q ss_pred ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--CcCceeeeeecCCCCCeeceEEEEEeC-----CC
Q psy16330 2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVLVS-----PY 73 (101)
Q Consensus 2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~~~~~~T~~~~~~~~P~w~e~~~~~~~-----~~ 73 (101)
-+...|......|.|+|.+| +|+. .+..+.+|||+.+.+. +..+.+|++++++.+|.|+|+|.|... ..
T Consensus 6 ~~~l~y~~~~~~L~v~v~~a~~L~~---~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~ 82 (125)
T cd08386 6 QFSVSYDFQESTLTLKILKAVELPA---KDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQ 82 (125)
T ss_pred EEEEEECCCCCEEEEEEEEecCCCC---ccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCC
Confidence 35567888999999999999 6876 3455778999999873 333589999999999999999998742 24
Q ss_pred CEEEEEEEeCCCCCCCCeeEEEEEECCC
Q psy16330 74 SIILFRLLDHRTFRRDCTIGEKRLNTST 101 (101)
Q Consensus 74 ~~l~~~v~~~~~~~~~~~iG~~~~~l~~ 101 (101)
..|.+++||++..+++++||++.++++.
T Consensus 83 ~~l~~~v~d~d~~~~~~~iG~~~i~l~~ 110 (125)
T cd08386 83 RVLYLQVLDYDRFSRNDPIGEVSLPLNK 110 (125)
T ss_pred CEEEEEEEeCCCCcCCcEeeEEEEeccc
Confidence 5799999999999899999999999863
No 27
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.84 E-value=1.1e-19 Score=103.11 Aligned_cols=96 Identities=24% Similarity=0.344 Sum_probs=80.6
Q ss_pred ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330 2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS----P 72 (101)
Q Consensus 2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~----~ 72 (101)
.+.-.|.+..++|.|+|.+| +|+. .+..+.+||||++.+.. ..+++|++++++.+|.|+|+|.|.+. .
T Consensus 6 ~~~l~y~~~~~~L~V~vi~a~~L~~---~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~ 82 (127)
T cd04030 6 QLTIRYSSQRQKLIVTVHKCRNLPP---CDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELK 82 (127)
T ss_pred EEEEEEeCCCCEEEEEEEEEECCCC---ccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhc
Confidence 45567899999999999999 6876 34557899999998742 23589999999999999999999986 2
Q ss_pred CCEEEEEEEeCCCC--CCCCeeEEEEEECC
Q psy16330 73 YSIILFRLLDHRTF--RRDCTIGEKRLNTS 100 (101)
Q Consensus 73 ~~~l~~~v~~~~~~--~~~~~iG~~~~~l~ 100 (101)
...|.+.+|+.+.+ +++++||++.+++.
T Consensus 83 ~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~ 112 (127)
T cd04030 83 RRTLDVAVKNSKSFLSREKKLLGQVLIDLS 112 (127)
T ss_pred CCEEEEEEEECCcccCCCCceEEEEEEecc
Confidence 46899999999875 68899999999986
No 28
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.84 E-value=5.4e-20 Score=105.24 Aligned_cols=96 Identities=22% Similarity=0.200 Sum_probs=80.4
Q ss_pred ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC------cCceeeeeecCCCCCeeceEEEEEeCC--
Q psy16330 2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY------KNPKTTRVVKNTYQPKWNEEFTVLVSP-- 72 (101)
Q Consensus 2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~------~~~~~T~~~~~~~~P~w~e~~~~~~~~-- 72 (101)
.+...|......|.|+|.+| +|+. .+..+.+|||+++++.+ ..+++|++++++.+|.|+|+|.|.+..
T Consensus 6 ~~~l~y~~~~~~L~V~Vi~A~~L~~---~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~ 82 (133)
T cd04009 6 TVKAYYRASEQSLRVEILNARNLLP---LDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQ 82 (133)
T ss_pred EEEEEEcCCCCEEEEEEEEeeCCCC---cCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhh
Confidence 34567888889999999999 6876 34557899999998742 235899999999999999999999862
Q ss_pred ----CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 73 ----YSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 73 ----~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
...|.|+|||++..+++++||++.++|+
T Consensus 83 ~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~ 114 (133)
T cd04009 83 CSVEGALLLFTVKDYDLLGSNDFEGEAFLPLN 114 (133)
T ss_pred cccCCCEEEEEEEecCCCCCCcEeEEEEEeHH
Confidence 3589999999999988999999999875
No 29
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.84 E-value=8.9e-20 Score=102.91 Aligned_cols=96 Identities=22% Similarity=0.309 Sum_probs=80.6
Q ss_pred ceecccccccceEEEEEEee-EeCCCCCCC-CCCCCCcEEEEEECC--c--CceeeeeecCCCCCeeceEEEEEeCC---
Q psy16330 2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGG-GLLKPNPYIELYVDY--K--NPKTTRVVKNTYQPKWNEEFTVLVSP--- 72 (101)
Q Consensus 2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~-~~~~~dpy~~v~~~~--~--~~~~T~~~~~~~~P~w~e~~~~~~~~--- 72 (101)
.+...|....+.|.|+|.+| +|+.. + ..+.+||||++++.. . .+++|++++++.+|.|+|+|.|.+..
T Consensus 4 ~~~l~y~~~~~~L~V~v~~a~~L~~~---~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l 80 (123)
T cd08521 4 EFSLSYNYKTGSLEVHIKECRNLAYA---DEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQL 80 (123)
T ss_pred EEEEEEeCCCCEEEEEEEEecCCCCc---CCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHh
Confidence 45568889999999999999 68763 3 346789999998732 1 35899999999999999999999872
Q ss_pred -CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 73 -YSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 73 -~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
...|.|++|+.+..+++++||++.++|+
T Consensus 81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~ 109 (123)
T cd08521 81 ETRTLQLSVWHHDRFGRNTFLGEVEIPLD 109 (123)
T ss_pred CCCEEEEEEEeCCCCcCCceeeEEEEecc
Confidence 5689999999999989999999999975
No 30
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.84 E-value=6.9e-20 Score=101.88 Aligned_cols=86 Identities=24% Similarity=0.380 Sum_probs=72.3
Q ss_pred ceEEEEEEee-EeCCCCCCCCC-CCCCcEEEEEECC--cCceeeeeecCCCCCeeceEEEEEeCC-----CCEEEEEEEe
Q psy16330 12 LQLLQLVECA-HLRRGGQGGGL-LKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVSP-----YSIILFRLLD 82 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~~~~-~~~dpy~~v~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~~-----~~~l~~~v~~ 82 (101)
+.|.|+|.+| +|+. .+.. +.+||||++.+.+ ...++|++++++.+|.|+|.|.|.+.. ...|.|+|||
T Consensus 1 G~L~V~v~~a~~L~~---~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPK---ADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCc---ccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence 4689999999 6876 3445 7899999998743 335899999999999999999997762 3589999999
Q ss_pred CCCCCCCCeeEEEEEECC
Q psy16330 83 HRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 83 ~~~~~~~~~iG~~~~~l~ 100 (101)
++.++.|++||++.++++
T Consensus 78 ~d~~~~dd~lG~~~i~l~ 95 (111)
T cd04041 78 SDRFTADDRLGRVEIDLK 95 (111)
T ss_pred CCCCCCCCcceEEEEEHH
Confidence 999989999999999874
No 31
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.84 E-value=1.3e-19 Score=104.00 Aligned_cols=96 Identities=20% Similarity=0.274 Sum_probs=80.5
Q ss_pred ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--C--cCceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330 2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--Y--KNPKTTRVVKNTYQPKWNEEFTVLVS----P 72 (101)
Q Consensus 2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~--~~~~~T~~~~~~~~P~w~e~~~~~~~----~ 72 (101)
.+...|.+..++|.|+|.+| +|+. .+..+.+|||+++.+. + ..+++|++++++.+|.|+|.|.|.++ .
T Consensus 5 ~~sl~y~~~~~~L~v~vi~a~~L~~---~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~ 81 (136)
T cd08405 5 LLSLCYNPTANRITVNIIKARNLKA---MDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLR 81 (136)
T ss_pred EEEEEEcCCCCeEEEEEEEeeCCCc---cccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhC
Confidence 45568889999999999999 6876 3456789999999873 2 22478999999999999999999986 3
Q ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 73 YSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
...|.|+|||.+.++++++||++.+++.
T Consensus 82 ~~~l~~~v~d~~~~~~~~~lG~~~i~~~ 109 (136)
T cd08405 82 ETTLIITVMDKDRLSRNDLIGKIYLGWK 109 (136)
T ss_pred CCEEEEEEEECCCCCCCcEeEEEEECCc
Confidence 4689999999999989999999999875
No 32
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.83 E-value=1.3e-19 Score=104.23 Aligned_cols=95 Identities=19% Similarity=0.264 Sum_probs=80.4
Q ss_pred eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC---c--CceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330 3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY---K--NPKTTRVVKNTYQPKWNEEFTVLVS----P 72 (101)
Q Consensus 3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~---~--~~~~T~~~~~~~~P~w~e~~~~~~~----~ 72 (101)
+...|....++|.|+|.+| +|+. .+..+.+||||++.+.. . .+++|++.+++.+|.|||+|.|.++ .
T Consensus 6 ~sL~Y~~~~~~L~V~VikarnL~~---~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~ 82 (138)
T cd08408 6 LGLEYNALTGRLSVEVIKGSNFKN---LAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLS 82 (138)
T ss_pred EEeEEcCCCCeEEEEEEEecCCCc---cccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhC
Confidence 4567999999999999999 7876 34557789999998732 1 2479999999999999999999997 4
Q ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 73 YSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
...|.|+||+.+..+++++||++.+++.
T Consensus 83 ~~~L~~~V~~~~~~~~~~~iG~v~l~~~ 110 (138)
T cd08408 83 EVTLMFSVYNKRKMKRKEMIGWFSLGLN 110 (138)
T ss_pred ccEEEEEEEECCCCCCCcEEEEEEECCc
Confidence 5699999999999999999999998764
No 33
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.83 E-value=1.4e-19 Score=103.81 Aligned_cols=95 Identities=22% Similarity=0.286 Sum_probs=79.8
Q ss_pred eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--Cc--CceeeeeecCCCCCeeceEEEEEeCC----C
Q psy16330 3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--YK--NPKTTRVVKNTYQPKWNEEFTVLVSP----Y 73 (101)
Q Consensus 3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~~--~~~~T~~~~~~~~P~w~e~~~~~~~~----~ 73 (101)
+...|.+..++|.|.|.+| +|+. .+..+.+|||+++.+. +. .+++|++++++.+|.|+|.|.|.+.. .
T Consensus 6 ~~l~y~~~~~~l~V~Vi~a~~L~~---~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~ 82 (136)
T cd08402 6 FSLRYVPTAGKLTVVILEAKNLKK---MDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQK 82 (136)
T ss_pred EEeEEcCCCCeEEEEEEEeeCCCc---ccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCC
Confidence 4568999999999999999 6876 3455789999999874 22 24789999999999999999999872 3
Q ss_pred CEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 74 SIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 74 ~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
..|.|++||.+.++++++||++.+++.
T Consensus 83 ~~l~~~v~d~~~~~~~~~iG~~~i~~~ 109 (136)
T cd08402 83 VHLIVTVLDYDRIGKNDPIGKVVLGCN 109 (136)
T ss_pred CEEEEEEEeCCCCCCCceeEEEEECCc
Confidence 489999999999999999999999874
No 34
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.83 E-value=1.6e-19 Score=103.50 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=79.2
Q ss_pred ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC-Cc---CceeeeeecCCCCCeeceEEEEEeC----C
Q psy16330 2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD-YK---NPKTTRVVKNTYQPKWNEEFTVLVS----P 72 (101)
Q Consensus 2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~-~~---~~~~T~~~~~~~~P~w~e~~~~~~~----~ 72 (101)
.+...|.+..+.|.|+|.+| +|+. .+..+.+||||++.+. +. .+++|++++++.||.|+|+|.|.+. .
T Consensus 4 ~~~l~y~~~~~~L~V~vi~a~~L~~---~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~ 80 (135)
T cd08410 4 LLSLNYLPSAGRLNVDIIRAKQLLQ---TDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE 80 (135)
T ss_pred EEEEEECCCCCeEEEEEEEecCCCc---ccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC
Confidence 46678999999999999999 6876 3556789999999873 22 2478999999999999999999986 3
Q ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEEC
Q psy16330 73 YSIILFRLLDHRTFRRDCTIGEKRLNT 99 (101)
Q Consensus 73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l 99 (101)
...|.|+|||++..+++++||++.+..
T Consensus 81 ~~~l~~~V~d~d~~~~~~~iG~~~l~~ 107 (135)
T cd08410 81 NVSLVFTVYGHNVKSSNDFIGRIVIGQ 107 (135)
T ss_pred CCEEEEEEEeCCCCCCCcEEEEEEEcC
Confidence 447999999999989999999988653
No 35
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.83 E-value=1.4e-19 Score=103.57 Aligned_cols=97 Identities=21% Similarity=0.260 Sum_probs=81.0
Q ss_pred CceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--Cc--CceeeeeecCCCCCeeceEEEEEeC----
Q psy16330 1 MFLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--YK--NPKTTRVVKNTYQPKWNEEFTVLVS---- 71 (101)
Q Consensus 1 ~~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~~--~~~~T~~~~~~~~P~w~e~~~~~~~---- 71 (101)
|.+...|.+..+.|.|+|.+| +|+. .+..+.+|||+++.+. +. .+++|++++++.+|.|+|.|.|.+.
T Consensus 3 l~~~~~y~~~~~~L~V~v~~A~~L~~---~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~ 79 (134)
T cd08403 3 LMFSLCYLPTAGRLTLTIIKARNLKA---MDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENV 79 (134)
T ss_pred EEEEEEEcCCCCEEEEEEEEeeCCCc---cccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHh
Confidence 356778999999999999999 6876 3556789999999873 22 2478999999999999999999886
Q ss_pred CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 72 PYSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 72 ~~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
....|.|+|||++..+++++||++.+++.
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 80 DNVSLIIAVVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEECCC
Confidence 23479999999999999999999999764
No 36
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.83 E-value=1.9e-19 Score=101.78 Aligned_cols=84 Identities=32% Similarity=0.575 Sum_probs=72.9
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEEeCCCCCC--CC
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRR--DC 90 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~~~~~~~--~~ 90 (101)
|.|+|.+| +|+. .+.++.+|||+.+.+++...++|++++++.+|.|+|.|.|.+.....|.|+|||++.++. ++
T Consensus 2 l~v~v~~A~~L~~---~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~l~i~V~d~~~~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAK---RDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGPSSIITIQVFDQKKFKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCc---cCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCCCCEEEEEEEECCCCCCCCCc
Confidence 78899999 6876 355678999999999755569999999999999999999999878899999999988765 57
Q ss_pred eeEEEEEECC
Q psy16330 91 TIGEKRLNTS 100 (101)
Q Consensus 91 ~iG~~~~~l~ 100 (101)
+||++.+++.
T Consensus 79 ~lG~~~i~l~ 88 (123)
T cd08382 79 FLGCVRIRAN 88 (123)
T ss_pred eEeEEEEEHH
Confidence 9999999875
No 37
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.83 E-value=2e-19 Score=101.85 Aligned_cols=96 Identities=25% Similarity=0.223 Sum_probs=79.8
Q ss_pred ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--CcCceeeeeecCCCCCeeceEEEEE-eC----CC
Q psy16330 2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVL-VS----PY 73 (101)
Q Consensus 2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~~~~~~T~~~~~~~~P~w~e~~~~~-~~----~~ 73 (101)
.+...|.+...+|.|+|.+| +|+.. +..+.+|||+.+.+. ...+++|++.++ .||.|||+|.|. ++ ..
T Consensus 6 ~~sl~Y~~~~~~L~V~Vi~a~nL~~~---~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~ 81 (124)
T cd08389 6 DVAFEYDPSARKLTVTVIRAQDIPTK---DRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNN 81 (124)
T ss_pred EEEEEECCCCCEEEEEEEEecCCCch---hcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhcc
Confidence 45668999999999999999 68763 445678999998763 334589999887 999999999998 65 45
Q ss_pred CEEEEEEEeCCCCCCCCeeEEEEEECCC
Q psy16330 74 SIILFRLLDHRTFRRDCTIGEKRLNTST 101 (101)
Q Consensus 74 ~~l~~~v~~~~~~~~~~~iG~~~~~l~~ 101 (101)
..|.++||+++.++++++||++.++|+.
T Consensus 82 ~~L~~~V~~~~~~~~~~~lG~~~i~L~~ 109 (124)
T cd08389 82 MALRFRLYGVERMRKERLIGEKVVPLSQ 109 (124)
T ss_pred CEEEEEEEECCCcccCceEEEEEEeccc
Confidence 6899999999999999999999999863
No 38
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.83 E-value=3.6e-19 Score=100.88 Aligned_cols=86 Identities=45% Similarity=0.724 Sum_probs=75.3
Q ss_pred ceEEEEEEeeEeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEEeCCCCCCCCe
Q psy16330 12 LQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCT 91 (101)
Q Consensus 12 ~~l~v~i~~a~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~~~~~~~~~~ 91 (101)
.+|.|+|.+|+|.. .+..+.+|||+.+.+++...++|++++++.+|.|+|.|.|.+.....|.|+|||++..+.+++
T Consensus 2 ~~L~V~i~~a~l~~---~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~~~~l~~~V~d~~~~~~~~~ 78 (125)
T cd04021 2 SQLQITVESAKLKS---NSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTPQSTLEFKVWSHHTLKADVL 78 (125)
T ss_pred ceEEEEEEeeECCC---CCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCCCCEEEEEEEeCCCCCCCcE
Confidence 57899999997655 244678999999999876569999999999999999999998877899999999999989999
Q ss_pred eEEEEEECC
Q psy16330 92 IGEKRLNTS 100 (101)
Q Consensus 92 iG~~~~~l~ 100 (101)
||++.++|.
T Consensus 79 iG~~~i~l~ 87 (125)
T cd04021 79 LGEASLDLS 87 (125)
T ss_pred EEEEEEEHH
Confidence 999999874
No 39
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.83 E-value=2.5e-19 Score=101.04 Aligned_cols=85 Identities=21% Similarity=0.327 Sum_probs=71.8
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCC-CCEEEEEEEeCCCCCCCCe
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDCT 91 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~-~~~l~~~v~~~~~~~~~~~ 91 (101)
|.|+|..| +|+.. ....+.+||||.+.+++...++|++++++.+|.|+|+|.|.+.. ...|.|.+|+++.++++++
T Consensus 2 l~v~v~~a~~L~~~--~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPR--SGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCC--CCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCce
Confidence 67888888 67762 12246789999999976656899999999999999999999983 5799999999999999999
Q ss_pred eEEEEEECC
Q psy16330 92 IGEKRLNTS 100 (101)
Q Consensus 92 iG~~~~~l~ 100 (101)
||.+.++++
T Consensus 80 iG~~~i~l~ 88 (121)
T cd08401 80 IGKVAIKKE 88 (121)
T ss_pred EEEEEEEHH
Confidence 999999864
No 40
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.83 E-value=3.4e-19 Score=104.96 Aligned_cols=88 Identities=23% Similarity=0.281 Sum_probs=73.8
Q ss_pred ccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC----CcCceeeeeecCCCCCeeceEEEEEeC-----CCCEEEEE
Q psy16330 10 SVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFR 79 (101)
Q Consensus 10 ~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~----~~~~~~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~~~ 79 (101)
..++|.|+|.+| +|+. .+..+.+||||++.+. +..+++|++++++.||.|+|.|.|... ....|.|+
T Consensus 25 ~~g~L~V~Vi~A~nL~~---~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~ 101 (162)
T cd04020 25 STGELHVWVKEAKNLPA---LKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELT 101 (162)
T ss_pred CCceEEEEEEeeeCCCC---CCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEE
Confidence 558999999999 6877 3456789999999863 223589999999999999999999753 34589999
Q ss_pred EEeCCCCCCCCeeEEEEEECC
Q psy16330 80 LLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 80 v~~~~~~~~~~~iG~~~~~l~ 100 (101)
|||++.++++++||++.+++.
T Consensus 102 V~d~d~~~~d~~lG~v~i~l~ 122 (162)
T cd04020 102 VWDHDKLSSNDFLGGVRLGLG 122 (162)
T ss_pred EEeCCCCCCCceEEEEEEeCC
Confidence 999999988999999999875
No 41
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.82 E-value=5.5e-19 Score=102.29 Aligned_cols=84 Identities=29% Similarity=0.460 Sum_probs=73.6
Q ss_pred ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCCC
Q psy16330 12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRD 89 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~~ 89 (101)
+.|.|+|.+| +|+.. +. +.+|||+.+.+++. +++|++++++.+|.|+|.|.|.+. +...+.|++||++.++.|
T Consensus 2 G~L~V~Vi~a~nL~~~---d~-~~sDPYV~v~~g~~-~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~d 76 (145)
T cd04038 2 GLLKVRVVRGTNLAVR---DF-TSSDPYVVLTLGNQ-KVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKD 76 (145)
T ss_pred eEEEEEEEeeECCCCC---CC-CCcCcEEEEEECCE-EEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCC
Confidence 5689999999 68652 33 77899999999876 599999999999999999999987 677899999999999999
Q ss_pred CeeEEEEEECC
Q psy16330 90 CTIGEKRLNTS 100 (101)
Q Consensus 90 ~~iG~~~~~l~ 100 (101)
++||++.+++.
T Consensus 77 d~iG~a~i~l~ 87 (145)
T cd04038 77 DSMGEAEIDLE 87 (145)
T ss_pred CEEEEEEEEHH
Confidence 99999999864
No 42
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.82 E-value=3.2e-19 Score=99.07 Aligned_cols=83 Identities=24% Similarity=0.332 Sum_probs=71.2
Q ss_pred EEEEEEee-EeCCCCCCC-CCCCCCcEEEEEECCcCceeeeeecCCCCCee-ceEEEEEeCC----CCEEEEEEEeCCCC
Q psy16330 14 LLQLVECA-HLRRGGQGG-GLLKPNPYIELYVDYKNPKTTRVVKNTYQPKW-NEEFTVLVSP----YSIILFRLLDHRTF 86 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~-~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w-~e~~~~~~~~----~~~l~~~v~~~~~~ 86 (101)
|.|+|.+| +|+.+ + ..+.+|||+++.+++. +++|++++++.+|.| +|.|.|.+.. ...|.|+|||++..
T Consensus 1 l~V~v~~a~~L~~~---d~~~~~~Dpyv~v~~~~~-~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~ 76 (110)
T cd08688 1 LKVRVVAARDLPVM---DRSSDLTDAFVEVKFGST-TYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTY 76 (110)
T ss_pred CEEEEEEEECCCcc---ccCCCCCCceEEEEECCe-eEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCC
Confidence 57889999 68763 3 3477899999999874 699999999999999 9999999872 36899999999999
Q ss_pred CCCCeeEEEEEECC
Q psy16330 87 RRDCTIGEKRLNTS 100 (101)
Q Consensus 87 ~~~~~iG~~~~~l~ 100 (101)
+++++||++.+++.
T Consensus 77 ~~~~~iG~~~~~l~ 90 (110)
T cd08688 77 SANDAIGKVYIDLN 90 (110)
T ss_pred CCCCceEEEEEeHH
Confidence 89999999999874
No 43
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.82 E-value=4.4e-19 Score=100.00 Aligned_cols=83 Identities=29% Similarity=0.376 Sum_probs=72.3
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCCCCe
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRDCT 91 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~~~~ 91 (101)
|.|+|..| +|++ .+..+.+||||.+.+++....+|++++++.+|.|+|.|.|.+. ....|.|.+|+.+.+++|++
T Consensus 2 l~v~vi~a~~L~~---~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPA---KDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcC---CCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCE
Confidence 78888888 6876 3556789999999998765579999999999999999999987 45799999999999999999
Q ss_pred eEEEEEEC
Q psy16330 92 IGEKRLNT 99 (101)
Q Consensus 92 iG~~~~~l 99 (101)
||++.+++
T Consensus 79 iG~~~~~~ 86 (121)
T cd04054 79 IGKVSLTR 86 (121)
T ss_pred EEEEEEcH
Confidence 99999875
No 44
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.82 E-value=4.7e-19 Score=100.08 Aligned_cols=84 Identities=20% Similarity=0.288 Sum_probs=72.0
Q ss_pred eEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCC
Q psy16330 13 QLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRD 89 (101)
Q Consensus 13 ~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~ 89 (101)
+|.|++.+| +|+. .+..+.+|||+.+.+++. ..+|++++++.+|.|+|+|.|.+. ....|.|++||++..+.+
T Consensus 1 ~L~v~vi~a~~L~~---~d~~~~~DPyv~v~~~~~-~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~ 76 (123)
T cd04025 1 RLRCHVLEARDLAP---KDRNGTSDPFVRVFYNGQ-TLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKN 76 (123)
T ss_pred CEEEEEEEeeCCCC---CCCCCCcCceEEEEECCE-EEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 588999998 6876 344567899999998766 489999999999999999999987 356899999999998889
Q ss_pred CeeEEEEEECC
Q psy16330 90 CTIGEKRLNTS 100 (101)
Q Consensus 90 ~~iG~~~~~l~ 100 (101)
++||++.+++.
T Consensus 77 ~~iG~~~~~l~ 87 (123)
T cd04025 77 DFLGKVVFSIQ 87 (123)
T ss_pred cEeEEEEEEHH
Confidence 99999999864
No 45
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.82 E-value=6.6e-19 Score=100.34 Aligned_cols=95 Identities=20% Similarity=0.221 Sum_probs=77.4
Q ss_pred eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--C--cCceeeeeecCCC-CCeeceEEEEEeC---CC
Q psy16330 3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--Y--KNPKTTRVVKNTY-QPKWNEEFTVLVS---PY 73 (101)
Q Consensus 3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~--~~~~~T~~~~~~~-~P~w~e~~~~~~~---~~ 73 (101)
+...|.+..++|.|.|..| +|+++ +..+..||||++++- + ..+++|++.+++. +|.|||+|.|+++ .+
T Consensus 5 ~sL~Y~p~~~rLtV~VikarnL~~~---~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~ 81 (135)
T cd08692 5 LGTCFQAVNSRIQLQILEAQNLPSS---STPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHG 81 (135)
T ss_pred EEeeecCcCCeEEEEEEEccCCCcc---cCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhhe
Confidence 4457999999999999999 78873 344556999999762 2 2358999999985 6999999999998 23
Q ss_pred CEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 74 SIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 74 ~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
..+.+++||++..+++++||++.++.+
T Consensus 82 v~l~v~v~d~~~~~~n~~IG~v~lG~~ 108 (135)
T cd08692 82 IQFLIKLYSRSSVRRKHFLGQVWISSD 108 (135)
T ss_pred eEEEEEEEeCCCCcCCceEEEEEECCc
Confidence 478899999998889999999998763
No 46
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.82 E-value=6.2e-19 Score=98.60 Aligned_cols=83 Identities=19% Similarity=0.321 Sum_probs=71.8
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCCC
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDC 90 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~~ 90 (101)
+.|.|..| +|+. .+..+.+|||+.+.+++. +++|++++++.+|.|+|.|.|.+. ....|.|++||++..++++
T Consensus 2 ~~V~v~~a~~L~~---~~~~~~~dPyv~v~~~~~-~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 2 VTIVLVEGKNLPP---MDDNGLSDPYVKFRLGNE-KYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred EEEEEEEEECCCC---CCCCCCCCcEEEEEECCE-eEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 67888888 6876 344578899999999776 589999999999999999999887 3579999999999988999
Q ss_pred eeEEEEEECC
Q psy16330 91 TIGEKRLNTS 100 (101)
Q Consensus 91 ~iG~~~~~l~ 100 (101)
+||++.++++
T Consensus 78 ~iG~~~~~l~ 87 (116)
T cd08376 78 FIGRCEIDLS 87 (116)
T ss_pred eEEEEEEeHH
Confidence 9999999864
No 47
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=3.8e-19 Score=100.98 Aligned_cols=84 Identities=26% Similarity=0.353 Sum_probs=71.3
Q ss_pred eEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCC-----CCEEEEEEEeCCCC
Q psy16330 13 QLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-----YSIILFRLLDHRTF 86 (101)
Q Consensus 13 ~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~-----~~~l~~~v~~~~~~ 86 (101)
+|.|+|.+| +|+. .+..+.+||||++.+++. +++|++++++.||.|+|.|.|.+.. ...|.|+||+.+.+
T Consensus 1 ~L~V~vi~A~~L~~---~d~~g~~dpyv~v~~~~~-~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMP---KDGQGSSSAYVELDFDGQ-KKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRS 76 (127)
T ss_pred CeEEEEEEeeCCCC---CCCCCCcCcEEEEEECCE-EecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCC
Confidence 478999999 6766 345577999999998876 4899999999999999999999862 35799999999887
Q ss_pred C-CCCeeEEEEEECC
Q psy16330 87 R-RDCTIGEKRLNTS 100 (101)
Q Consensus 87 ~-~~~~iG~~~~~l~ 100 (101)
+ .+++||++.++++
T Consensus 77 ~~~d~~lG~v~i~l~ 91 (127)
T cd04022 77 GRRRSFLGRVRISGT 91 (127)
T ss_pred cCCCCeeeEEEEcHH
Confidence 6 7899999999875
No 48
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.82 E-value=5e-19 Score=99.68 Aligned_cols=86 Identities=27% Similarity=0.394 Sum_probs=73.7
Q ss_pred ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCCC
Q psy16330 12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRD 89 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~~ 89 (101)
+.|.|+|..| +|++ .+..+.+|||+.+.+++...++|++++++.+|.|+|.+.|.+. +...|.|++|+.+..+++
T Consensus 1 g~L~V~Vi~a~~L~~---~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKN---LEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCC---ccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCC
Confidence 3578889888 6776 3456789999999997755689999999999999999988886 557999999999999899
Q ss_pred CeeEEEEEECC
Q psy16330 90 CTIGEKRLNTS 100 (101)
Q Consensus 90 ~~iG~~~~~l~ 100 (101)
++||++.+++.
T Consensus 78 ~~IG~~~~~l~ 88 (120)
T cd04045 78 RSLGSVEINVS 88 (120)
T ss_pred CeeeEEEEeHH
Confidence 99999999864
No 49
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.81 E-value=8.6e-19 Score=98.30 Aligned_cols=84 Identities=24% Similarity=0.325 Sum_probs=70.9
Q ss_pred ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecC-CCCCeeceEEEEEeCC--CCEEEEEEEeCCCCC
Q psy16330 12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKN-TYQPKWNEEFTVLVSP--YSIILFRLLDHRTFR 87 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~--~~~l~~~v~~~~~~~ 87 (101)
+.|.|+|.+| +|+. .+..+.+|||+.+.+++. +++|+++.+ +.||.|+|.|.|.+.. ...|.|+|||++..+
T Consensus 1 g~L~V~v~~A~~L~~---~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~ 76 (118)
T cd08681 1 GTLVVVVLKARNLPN---KRKLDKQDPYCVLRIGGV-TKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK 76 (118)
T ss_pred CEEEEEEEEccCCCC---CCcCCCCCceEEEEECCC-ccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC
Confidence 4689999999 6876 355678999999999875 588988754 7999999999999873 568999999998776
Q ss_pred CCCeeEEEEEECC
Q psy16330 88 RDCTIGEKRLNTS 100 (101)
Q Consensus 88 ~~~~iG~~~~~l~ 100 (101)
+++||++.+++.
T Consensus 77 -~~~iG~~~~~l~ 88 (118)
T cd08681 77 -PDLIGDTEVDLS 88 (118)
T ss_pred -CcceEEEEEecH
Confidence 889999999875
No 50
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.81 E-value=4.8e-19 Score=99.60 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=72.9
Q ss_pred cccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC---CCCEEEE
Q psy16330 7 YFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS---PYSIILF 78 (101)
Q Consensus 7 y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~---~~~~l~~ 78 (101)
|....+.|.|+|.+| +|+.. + .+.+||||++++.. ..+++|++++++.+|.|||+|.|.+. ....|.|
T Consensus 7 ~~~~~~~L~V~Vi~ar~L~~~---~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v 82 (119)
T cd08685 7 IEGQNRKLTLHVLEAKGLRST---N-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLV 82 (119)
T ss_pred EEEcCCEEEEEEEEEECCCCC---C-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEE
Confidence 344678999999999 68763 3 57889999998742 22468999999999999999999986 2347889
Q ss_pred EEEeCCCCC-CCCeeEEEEEECC
Q psy16330 79 RLLDHRTFR-RDCTIGEKRLNTS 100 (101)
Q Consensus 79 ~v~~~~~~~-~~~~iG~~~~~l~ 100 (101)
+||+.+..+ ++++||.+.+++.
T Consensus 83 ~V~~~~~~~~~~~~lG~~~i~l~ 105 (119)
T cd08685 83 TVWNKLSKSRDSGLLGCMSFGVK 105 (119)
T ss_pred EEECCCCCcCCCEEEEEEEecHH
Confidence 999998765 4689999999875
No 51
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.81 E-value=7.7e-19 Score=98.70 Aligned_cols=83 Identities=27% Similarity=0.476 Sum_probs=69.7
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC--cCceeeeeecCCCCCeeceEEEEEeCC--CCEEEEEEEeCCCCCC
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY--KNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRR 88 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~~--~~~l~~~v~~~~~~~~ 88 (101)
|.|+|.+| +|++ .+..+.+||||++.+.+ ..+++|++++++.||.|+|+|.|.+.. ...|.|++||++.. +
T Consensus 2 L~V~vi~a~~L~~---~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~ 77 (119)
T cd04036 2 LTVRVLRATNITK---GDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-M 77 (119)
T ss_pred eEEEEEEeeCCCc---cCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-C
Confidence 67888898 6876 34457899999999853 335899999999999999999998872 45799999999988 8
Q ss_pred CCeeEEEEEECC
Q psy16330 89 DCTIGEKRLNTS 100 (101)
Q Consensus 89 ~~~iG~~~~~l~ 100 (101)
+++||++.++++
T Consensus 78 ~~~iG~~~~~l~ 89 (119)
T cd04036 78 DDHLGTVLFDVS 89 (119)
T ss_pred CcccEEEEEEHH
Confidence 899999999874
No 52
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.81 E-value=7.5e-19 Score=100.99 Aligned_cols=93 Identities=20% Similarity=0.296 Sum_probs=78.4
Q ss_pred eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc----CceeeeeecCCCCCeeceEEEEEeC----CC
Q psy16330 3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVS----PY 73 (101)
Q Consensus 3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~----~~~~T~~~~~~~~P~w~e~~~~~~~----~~ 73 (101)
+.-.|.+...+|.|.|..| +|+.. + .+.+||||++.+... .+++|++.+++.||.|||.|.|.++ ..
T Consensus 6 ~sl~y~~~~~~L~V~V~~a~nL~~~---~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~ 81 (137)
T cd08409 6 ISLTYNPTLNRLTVVVLRARGLRQL---D-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDT 81 (137)
T ss_pred EEEEECCCCCeEEEEEEEecCCCcc---c-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCc
Confidence 4557999999999999999 78763 4 667899999986421 2478999999999999999999997 34
Q ss_pred CEEEEEEEeCCCCCCCCeeEEEEEEC
Q psy16330 74 SIILFRLLDHRTFRRDCTIGEKRLNT 99 (101)
Q Consensus 74 ~~l~~~v~~~~~~~~~~~iG~~~~~l 99 (101)
..|.|+||+.+..+++++||++.++.
T Consensus 82 ~~L~~~V~~~~~~~~~~~lG~v~ig~ 107 (137)
T cd08409 82 ASLSLSVMQSGGVRKSKLLGRVVLGP 107 (137)
T ss_pred cEEEEEEEeCCCCCCcceEEEEEECC
Confidence 68999999999888999999999864
No 53
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.81 E-value=1e-18 Score=99.08 Aligned_cols=82 Identities=26% Similarity=0.269 Sum_probs=69.9
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC-cCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCCCC
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY-KNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRDC 90 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~-~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~~~ 90 (101)
|.|+|.+| +|+. ..+.+||||.+.++. ..+++|++++++.+|.|+|.|.|.+. ....|.|+|||.+..++++
T Consensus 1 l~v~v~~A~~L~~-----~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~ 75 (126)
T cd08678 1 LLVKNIKANGLSE-----AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSK 75 (126)
T ss_pred CEEEEEEecCCCC-----CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCc
Confidence 46888888 6754 346899999999874 23589999999999999999999997 4678999999999988899
Q ss_pred eeEEEEEECC
Q psy16330 91 TIGEKRLNTS 100 (101)
Q Consensus 91 ~iG~~~~~l~ 100 (101)
+||++.+++.
T Consensus 76 ~lG~~~i~l~ 85 (126)
T cd08678 76 FLGLAIVPFD 85 (126)
T ss_pred eEEEEEEeHH
Confidence 9999999874
No 54
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.80 E-value=1.9e-18 Score=98.03 Aligned_cols=84 Identities=18% Similarity=0.249 Sum_probs=72.3
Q ss_pred ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCCC
Q psy16330 12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRD 89 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~~ 89 (101)
..|+|+|.+| +|+. .+..+.+|||+.+.+++. .++|++++++.+|.|+|.|.|... ....|.|+|||++.. .|
T Consensus 3 ~~~~V~v~~A~~L~~---~d~~g~~dPyv~v~~~~~-~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d 77 (126)
T cd04046 3 VVTQVHVHSAEGLSK---QDSGGGADPYVIIKCEGE-SVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CD 77 (126)
T ss_pred EEEEEEEEeCcCCCC---CCCCCCcCccEEEEECCE-EEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CC
Confidence 5688999999 6766 355688999999998877 489999999999999999999876 667899999999877 47
Q ss_pred CeeEEEEEECC
Q psy16330 90 CTIGEKRLNTS 100 (101)
Q Consensus 90 ~~iG~~~~~l~ 100 (101)
++||.+.+++.
T Consensus 78 ~~lG~~~~~l~ 88 (126)
T cd04046 78 EFLGQATLSAD 88 (126)
T ss_pred CceEEEEEecc
Confidence 89999999875
No 55
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.80 E-value=1.8e-18 Score=97.43 Aligned_cols=81 Identities=25% Similarity=0.272 Sum_probs=67.4
Q ss_pred cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCC
Q psy16330 11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRR 88 (101)
Q Consensus 11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~ 88 (101)
++.|.|+|.+| +|+. . +..|||+++.+++. +.+|++.+++ ||.|+|.|.|.+. ....|.|+|||++.+ .
T Consensus 1 m~~L~V~Vv~Ar~L~~---~---~~~dPYV~Ik~g~~-k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~ 71 (127)
T cd08394 1 MSLLCVLVKKAKLDGA---P---DKFNTYVTLKVQNV-KSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI-W 71 (127)
T ss_pred CceEEEEEEEeeCCCC---C---CCCCCeEEEEECCE-EeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc-C
Confidence 35799999999 4643 2 24589999999876 5889998874 9999999999997 556799999999865 8
Q ss_pred CCeeEEEEEECC
Q psy16330 89 DCTIGEKRLNTS 100 (101)
Q Consensus 89 ~~~iG~~~~~l~ 100 (101)
|++||++.++|+
T Consensus 72 DD~lG~v~i~L~ 83 (127)
T cd08394 72 DTLVGTVWIPLS 83 (127)
T ss_pred CCceEEEEEEhH
Confidence 999999999985
No 56
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.80 E-value=2.8e-18 Score=97.13 Aligned_cols=84 Identities=21% Similarity=0.309 Sum_probs=71.4
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcC-ceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCC
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKN-PKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRD 89 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~-~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~ 89 (101)
+.|.|.+| +|+. .+..+.+|||+++.+++.. ..+|++++++.+|.|+|.|.|.+. ....|.|+|||.+..+++
T Consensus 2 lrV~Vi~a~~L~~---~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~d 78 (124)
T cd04037 2 VRVYVVRARNLQP---KDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSD 78 (124)
T ss_pred EEEEEEECcCCCC---CCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence 67888888 6876 3556789999999987653 368888999999999999999875 456899999999999899
Q ss_pred CeeEEEEEECC
Q psy16330 90 CTIGEKRLNTS 100 (101)
Q Consensus 90 ~~iG~~~~~l~ 100 (101)
++||++.+++.
T Consensus 79 d~iG~~~i~l~ 89 (124)
T cd04037 79 DLIGETVIDLE 89 (124)
T ss_pred ceeEEEEEeec
Confidence 99999999885
No 57
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.80 E-value=1.1e-18 Score=101.56 Aligned_cols=87 Identities=24% Similarity=0.336 Sum_probs=71.5
Q ss_pred eEEEEEEee-EeCCCCCC-----------CCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC---CCCEEE
Q psy16330 13 QLLQLVECA-HLRRGGQG-----------GGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS---PYSIIL 77 (101)
Q Consensus 13 ~l~v~i~~a-~l~~~~~~-----------~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~---~~~~l~ 77 (101)
.|.|+|.+| +|+.+... ...+.+||||++.+++.. .+|++++++.||.|||+|.|.+. ....|.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~-~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~ 79 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQK-VKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK 79 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEe-eecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence 378999999 68874111 112368999999998874 79999999999999999999864 356999
Q ss_pred EEEEeCCCCCCCCeeEEEEEECC
Q psy16330 78 FRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 78 ~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
|++||++..++|++||++.++++
T Consensus 80 ~~v~D~d~~~~dd~iG~~~l~l~ 102 (151)
T cd04018 80 IQIRDWDRVGNDDVIGTHFIDLS 102 (151)
T ss_pred EEEEECCCCCCCCEEEEEEEeHH
Confidence 99999999989999999999874
No 58
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.80 E-value=3.3e-18 Score=95.99 Aligned_cols=85 Identities=19% Similarity=0.180 Sum_probs=73.0
Q ss_pred ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCC-CCEEEEEEEeCCCCCCC
Q psy16330 12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRD 89 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~-~~~l~~~v~~~~~~~~~ 89 (101)
+.|.|+|..| +|+. .+..+.+|||+.+++++. ..+|++++++.+|.|+|+|.|.+.. ...+.|++||++..+++
T Consensus 1 g~l~v~v~~a~~L~~---~~~~~~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAA---ADIGGKSDPFCVLELVNA-RLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCC---CCCCCCCCcEEEEEECCE-eeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCC
Confidence 4688999999 6876 344577899999998766 4899999999999999999999873 67899999999988889
Q ss_pred CeeEEEEEECC
Q psy16330 90 CTIGEKRLNTS 100 (101)
Q Consensus 90 ~~iG~~~~~l~ 100 (101)
++||++.+++.
T Consensus 77 ~~iG~~~~~l~ 87 (119)
T cd08377 77 EFLGKVAIPLL 87 (119)
T ss_pred ceeeEEEEEHH
Confidence 99999999864
No 59
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.80 E-value=2.7e-18 Score=98.02 Aligned_cols=95 Identities=25% Similarity=0.353 Sum_probs=80.3
Q ss_pred eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc----CceeeeeecCCCCCeeceEEEEEeCC----C
Q psy16330 3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSP----Y 73 (101)
Q Consensus 3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~----~~~~T~~~~~~~~P~w~e~~~~~~~~----~ 73 (101)
+.-.|.+..++|.|+|.+| +|+. .+..+.+||||++.+... .+++|++++++.+|.|+|+|.|.+.. .
T Consensus 5 ~~l~y~~~~~~L~V~v~~a~~L~~---~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~ 81 (134)
T cd00276 5 LSLSYLPTAERLTVVVLKARNLPP---SDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEE 81 (134)
T ss_pred EEEEeeCCCCEEEEEEEEeeCCCC---ccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCC
Confidence 4567888899999999999 6876 344577899999987532 24799999999999999999999872 4
Q ss_pred CEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 74 SIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 74 ~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
..|.|+||+.+..+++++||++.++++
T Consensus 82 ~~l~~~v~d~~~~~~~~~lG~~~i~l~ 108 (134)
T cd00276 82 VSLVITVVDKDSVGRNEVIGQVVLGPD 108 (134)
T ss_pred cEEEEEEEecCCCCCCceeEEEEECCC
Confidence 689999999998888999999999886
No 60
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.80 E-value=3e-18 Score=97.88 Aligned_cols=84 Identities=27% Similarity=0.468 Sum_probs=71.3
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc------CceeeeeecCCCCCeeceEEEEEeCC-CCEEEEEEEeCCC
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK------NPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRT 85 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~------~~~~T~~~~~~~~P~w~e~~~~~~~~-~~~l~~~v~~~~~ 85 (101)
|.|+|.+| +|+. .+..+.+|||+.+.+.+. ...+|++++++.+|.|+++|.|.+.+ ...|.|++||.+.
T Consensus 2 L~v~Vi~a~~L~~---~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~ 78 (133)
T cd04033 2 LRVKVLAGIDLAK---KDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENR 78 (133)
T ss_pred EEEEEEEeECCCc---ccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCC
Confidence 68889999 6876 345578999999988643 24789999999999999999999874 6789999999999
Q ss_pred CCCCCeeEEEEEECC
Q psy16330 86 FRRDCTIGEKRLNTS 100 (101)
Q Consensus 86 ~~~~~~iG~~~~~l~ 100 (101)
.+++++||++.++++
T Consensus 79 ~~~~~~iG~~~i~l~ 93 (133)
T cd04033 79 LTRDDFLGQVEVPLN 93 (133)
T ss_pred CCCCCeeEEEEEEHH
Confidence 989999999999864
No 61
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.80 E-value=2.2e-18 Score=97.76 Aligned_cols=85 Identities=25% Similarity=0.239 Sum_probs=73.0
Q ss_pred ceEEEEEEee-EeCCCCCCCC--CCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCC
Q psy16330 12 LQLLQLVECA-HLRRGGQGGG--LLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTF 86 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~~~--~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~ 86 (101)
+.|.|+|.+| +|+. .+. .+.+||||.+.+++. +++|++++++.+|.|++.|.|.+. ....|.|++||++..
T Consensus 1 g~l~v~v~~a~~L~~---~~~~~~~~~dPyv~v~~~~~-~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~ 76 (128)
T cd04024 1 GVLRVHVVEAKDLAA---KDRSGKGKSDPYAILSVGAQ-RFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRF 76 (128)
T ss_pred CEEEEEEEEeeCCCc---ccCCCCCCcCCeEEEEECCE-EEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCC
Confidence 4688999998 6876 344 578999999998766 589999999999999999999887 467999999999988
Q ss_pred CCCCeeEEEEEECC
Q psy16330 87 RRDCTIGEKRLNTS 100 (101)
Q Consensus 87 ~~~~~iG~~~~~l~ 100 (101)
+.+++||++.+++.
T Consensus 77 ~~~~~lG~~~i~l~ 90 (128)
T cd04024 77 AGKDYLGEFDIALE 90 (128)
T ss_pred CCCCcceEEEEEHH
Confidence 88999999999874
No 62
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.79 E-value=3.2e-18 Score=96.57 Aligned_cols=87 Identities=24% Similarity=0.304 Sum_probs=73.3
Q ss_pred ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC-cCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCC
Q psy16330 12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY-KNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRR 88 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~-~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~ 88 (101)
+.|.|+|.+| +|+.. ....+.+||||.+.+++ ...++|+++.++.+|.|+|.+.|.+. ....|.|++||.+..+.
T Consensus 2 g~l~v~v~~a~~L~~~--~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 2 GVLAVTIKSARGLKGS--DIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRK 79 (124)
T ss_pred eEEEEEEEcccCCCcc--cccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCC
Confidence 5789999999 67742 11235689999999987 45699999999999999999999887 47799999999998888
Q ss_pred CCeeEEEEEECC
Q psy16330 89 DCTIGEKRLNTS 100 (101)
Q Consensus 89 ~~~iG~~~~~l~ 100 (101)
+++||.+.+++.
T Consensus 80 d~~iG~~~~~l~ 91 (124)
T cd04044 80 DKLIGTAEFDLS 91 (124)
T ss_pred CceeEEEEEEHH
Confidence 999999999874
No 63
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.79 E-value=2.1e-18 Score=100.15 Aligned_cols=83 Identities=24% Similarity=0.243 Sum_probs=69.0
Q ss_pred eEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc----CceeeeeecCCCCCeeceEEEEEeC----------------
Q psy16330 13 QLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVS---------------- 71 (101)
Q Consensus 13 ~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~----~~~~T~~~~~~~~P~w~e~~~~~~~---------------- 71 (101)
+|.|+|.+| +|+. ..|.+||||++.+.+. .+++|++++++.+|.|+|.|.|.+.
T Consensus 1 kL~V~Vi~ArnL~~-----~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~ 75 (148)
T cd04010 1 KLSVRVIECSDLAL-----KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEED 75 (148)
T ss_pred CEEEEEEeCcCCCC-----CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccc
Confidence 478999998 6754 3467899999998642 3579999999999999999999983
Q ss_pred -CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 72 -PYSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 72 -~~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
....|.|.||+.+..++++|||++.+++.
T Consensus 76 ~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~ 105 (148)
T cd04010 76 AEKLELRVDLWHASMGGGDVFLGEVRIPLR 105 (148)
T ss_pred ccEEEEEEEEEcCCCCCCCceeEEEEEecc
Confidence 12478999999998889999999999986
No 64
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.79 E-value=3.6e-18 Score=100.26 Aligned_cols=89 Identities=22% Similarity=0.266 Sum_probs=73.1
Q ss_pred cceEEEEEEee-EeCCCCCC---------------------------CCCCCCCcEEEEEECCcCceeeeeecCCCCCee
Q psy16330 11 VLQLLQLVECA-HLRRGGQG---------------------------GGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKW 62 (101)
Q Consensus 11 ~~~l~v~i~~a-~l~~~~~~---------------------------~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w 62 (101)
.+.|.|+|.+| +|+++... ...|.+|||+.+.+++....+|++++++.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 46789999999 68774210 123668999999998765579999999999999
Q ss_pred ceEEEEEeC-CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 63 NEEFTVLVS-PYSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 63 ~e~~~~~~~-~~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
||+|.|.+. ....|.|.+||++.++ +++||++.++++
T Consensus 86 nE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~ 123 (158)
T cd04015 86 NESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVE 123 (158)
T ss_pred ceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhH
Confidence 999999886 5568999999998875 579999999875
No 65
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.79 E-value=2.8e-18 Score=99.93 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=71.4
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecC-CCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCC
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKN-TYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRD 89 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~ 89 (101)
|.|+|..| +|+. .+..|.+||||++.+++. +.+|++..+ +.+|.|||.|.|.+. ....+.|++|+.+..+++
T Consensus 2 L~V~Vi~A~~L~~---~d~~g~sDPYV~v~l~~~-~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 2 LRVTVIEAQDLVP---SDKNRVPEVFVKAQLGNQ-VLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred EEEEEEEeECCCC---CCCCCCCCeEEEEEECCE-EeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 78899999 6876 355688999999999886 589999877 699999999999986 346899999999988889
Q ss_pred CeeEEEEEECC
Q psy16330 90 CTIGEKRLNTS 100 (101)
Q Consensus 90 ~~iG~~~~~l~ 100 (101)
++||++.++|+
T Consensus 78 d~lG~v~i~L~ 88 (150)
T cd04019 78 EPLGRAVIPLN 88 (150)
T ss_pred CeEEEEEEEHH
Confidence 99999999985
No 66
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.79 E-value=4.3e-18 Score=97.25 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=74.2
Q ss_pred cceEEEEEEee-EeCCCCCCC-------CCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEEe
Q psy16330 11 VLQLLQLVECA-HLRRGGQGG-------GLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLD 82 (101)
Q Consensus 11 ~~~l~v~i~~a-~l~~~~~~~-------~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~ 82 (101)
.+.|.|+|..| +|+...... ..+.+||||.+.+++....+|++++++.+|.|||+|.|.+.....+.|.+|+
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~l~~~v~d 82 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHNGRNLELTVFH 82 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCCCCEEEEEEEe
Confidence 46789999999 676531100 1256899999999876557999999999999999999999877899999999
Q ss_pred CCCCCCCCeeEEEEEECC
Q psy16330 83 HRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 83 ~~~~~~~~~iG~~~~~l~ 100 (101)
.+..+.+++||++.++|+
T Consensus 83 ~~~~~~~~~iG~~~i~l~ 100 (132)
T cd04014 83 DAAIGPDDFVANCTISFE 100 (132)
T ss_pred CCCCCCCceEEEEEEEhH
Confidence 998888999999999875
No 67
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.79 E-value=4.5e-18 Score=94.56 Aligned_cols=84 Identities=30% Similarity=0.284 Sum_probs=71.8
Q ss_pred ccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-C-----CCEEEEEEEe
Q psy16330 10 SVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-P-----YSIILFRLLD 82 (101)
Q Consensus 10 ~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~-----~~~l~~~v~~ 82 (101)
..+.|.|+|.+| +|+ .+.+|||+++.+++. +++|++++++.+|.|+|.|.|.+. + ...|.|+|||
T Consensus 2 ~~~~l~V~v~~a~~L~-------~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d 73 (111)
T cd04011 2 QDFQVRVRVIEARQLV-------GGNIDPVVKVEVGGQ-KKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYD 73 (111)
T ss_pred CcEEEEEEEEEcccCC-------CCCCCCEEEEEECCE-eeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEc
Confidence 456789999999 565 256899999999876 489999999999999999999874 1 4689999999
Q ss_pred CCCCCCCCeeEEEEEECCC
Q psy16330 83 HRTFRRDCTIGEKRLNTST 101 (101)
Q Consensus 83 ~~~~~~~~~iG~~~~~l~~ 101 (101)
.+.++++++||++.++++.
T Consensus 74 ~~~~~~~~~iG~~~i~l~~ 92 (111)
T cd04011 74 SRSLRSDTLIGSFKLDVGT 92 (111)
T ss_pred CcccccCCccEEEEECCcc
Confidence 9998889999999999863
No 68
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.79 E-value=9.6e-18 Score=94.70 Aligned_cols=95 Identities=21% Similarity=0.241 Sum_probs=78.3
Q ss_pred ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEE-eC----
Q psy16330 2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVL-VS---- 71 (101)
Q Consensus 2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~-~~---- 71 (101)
.+.-.|.+..+.|.|+|.+| +|++ .+..+.+|||+++.+.+ ...++|++++++.+|.|++.|.|. +.
T Consensus 5 ~~~l~y~~~~~~L~V~v~~a~~L~~---~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~ 81 (123)
T cd04035 5 EFTLLYDPANSALHCTIIRAKGLKA---MDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDI 81 (123)
T ss_pred EEEEEEeCCCCEEEEEEEEeeCCCC---CCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHh
Confidence 45568999999999999999 6876 34457789999998631 235899999999999999999986 33
Q ss_pred CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 72 PYSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 72 ~~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
....+.|++||.+.. .+++||++.++++
T Consensus 82 ~~~~l~~~v~d~~~~-~~~~iG~~~i~l~ 109 (123)
T cd04035 82 QRKTLRLLVLDEDRF-GNDFLGETRIPLK 109 (123)
T ss_pred CCCEEEEEEEEcCCc-CCeeEEEEEEEcc
Confidence 246899999999988 8899999999886
No 69
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.78 E-value=3.8e-18 Score=93.99 Aligned_cols=80 Identities=29% Similarity=0.476 Sum_probs=68.7
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCCC
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDC 90 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~~ 90 (101)
|.|+|.+| +|+. .+..+.+||||++.+++. .++|++++++.+|.|+|.|.|.+. ....|.|+||+.+. ++
T Consensus 2 L~V~v~~A~~L~~---~~~~~~~dpyv~v~~~~~-~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 2 LFVYLDSAKNLPL---AKSTKEPSPYVELTVGKT-TQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred EEEEEeeecCCCC---cccCCCCCcEEEEEECCE-EEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 67899999 6876 344578999999999885 589999999999999999999998 35689999999875 78
Q ss_pred eeEEEEEECC
Q psy16330 91 TIGEKRLNTS 100 (101)
Q Consensus 91 ~iG~~~~~l~ 100 (101)
+||++.++|.
T Consensus 75 ~iG~~~i~l~ 84 (105)
T cd04050 75 SLGSLTLPLS 84 (105)
T ss_pred ccEEEEEEHH
Confidence 9999999874
No 70
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.78 E-value=1e-17 Score=94.87 Aligned_cols=85 Identities=21% Similarity=0.284 Sum_probs=71.7
Q ss_pred eEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc--CceeeeeecCCCCCeeceEEEEEeCC--CCEEEEEEEeCCCCC
Q psy16330 13 QLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK--NPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFR 87 (101)
Q Consensus 13 ~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~--~~~~T~~~~~~~~P~w~e~~~~~~~~--~~~l~~~v~~~~~~~ 87 (101)
.+.|+|.+| +|+. .+..+..|||+.+...+. ..++|++++++.+|.|+|+|.|.+.. ...|.|+||+++..+
T Consensus 2 ~~~V~v~~a~~L~~---~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~ 78 (126)
T cd04043 2 LFTIRIVRAENLKA---DSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVG 78 (126)
T ss_pred EEEEEEEEeECCCC---CCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCC
Confidence 578889999 6876 345578899999987543 34799999999999999999999873 568999999999888
Q ss_pred CCCeeEEEEEECC
Q psy16330 88 RDCTIGEKRLNTS 100 (101)
Q Consensus 88 ~~~~iG~~~~~l~ 100 (101)
++++||++.++|+
T Consensus 79 ~~~~iG~~~i~l~ 91 (126)
T cd04043 79 KHDLCGRASLKLD 91 (126)
T ss_pred CCceEEEEEEecC
Confidence 8999999999875
No 71
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.78 E-value=3.3e-18 Score=96.26 Aligned_cols=84 Identities=23% Similarity=0.347 Sum_probs=68.3
Q ss_pred EEEEEEeeEeCCCCCCCCCCCCCcEEEEEECCcC------ceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCC
Q psy16330 14 LLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKN------PKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRT 85 (101)
Q Consensus 14 l~v~i~~a~l~~~~~~~~~~~~dpy~~v~~~~~~------~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~ 85 (101)
+.+.+.+.+|++ .+..+.+|||+++++.+.. .++|++++++.+|.|+|.+.|.+. ....|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~---~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~ 79 (120)
T cd04048 3 VELSISCRNLLD---KDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDS 79 (120)
T ss_pred EEEEEEccCCCC---CCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecC
Confidence 445555557776 3556889999999886542 489999999999999999998764 55689999999997
Q ss_pred ----CCCCCeeEEEEEECC
Q psy16330 86 ----FRRDCTIGEKRLNTS 100 (101)
Q Consensus 86 ----~~~~~~iG~~~~~l~ 100 (101)
.+++++||++.++++
T Consensus 80 ~~~~~~~~d~iG~~~i~l~ 98 (120)
T cd04048 80 KSKDLSDHDFLGEAECTLG 98 (120)
T ss_pred CcCCCCCCcEEEEEEEEHH
Confidence 788999999999874
No 72
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.78 E-value=7.9e-18 Score=93.76 Aligned_cols=79 Identities=25% Similarity=0.397 Sum_probs=66.1
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEEeC-----
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDH----- 83 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~~----- 83 (101)
|.|+|..| +|+ +..||||.++++. ..+++|++++++.+|.|+|+|.+.+.....|.+.+||+
T Consensus 1 L~V~V~~A~~L~--------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~s~~L~~~v~d~~~~~~ 72 (118)
T cd08686 1 LNVIVHSAQGFK--------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEGSQTLRILCYEKCYSKV 72 (118)
T ss_pred CEEEEEeCCCCC--------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCCCCEEEEEEEEcccccc
Confidence 56888888 453 3489999998863 23589999999999999999999998778999999998
Q ss_pred --CCCCCCCeeEEEEEECC
Q psy16330 84 --RTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 84 --~~~~~~~~iG~~~~~l~ 100 (101)
+..+.|+++|.+.+.|.
T Consensus 73 ~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 73 KLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred cccccCcccEEEEEEEEEC
Confidence 45678999999988774
No 73
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.78 E-value=7.8e-18 Score=95.63 Aligned_cols=85 Identities=22% Similarity=0.349 Sum_probs=71.0
Q ss_pred ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCC---
Q psy16330 12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTF--- 86 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~--- 86 (101)
++|.|+|.+| +|+. .+..+.+|||+.+.+++. ..+|++++++.+|.|+|.|.|.+. +...|.|+|||++..
T Consensus 1 ~~L~V~vi~a~~L~~---~d~~g~~DPyv~v~~~~~-~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~ 76 (127)
T cd04027 1 AKISITVVCAQGLIA---KDKTGTSDPYVTVQVGKT-KKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKS 76 (127)
T ss_pred CeEEEEEEECcCCcC---CCCCCCcCcEEEEEECCE-eeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccc
Confidence 3688999999 6876 355578899999998765 589999999999999999999886 556899999998853
Q ss_pred --------CCCCeeEEEEEECC
Q psy16330 87 --------RRDCTIGEKRLNTS 100 (101)
Q Consensus 87 --------~~~~~iG~~~~~l~ 100 (101)
+.+++||++.+++.
T Consensus 77 ~~~~~~~~~~~~~iG~~~i~l~ 98 (127)
T cd04027 77 RLKQKFTRESDDFLGQTIIEVR 98 (127)
T ss_pred ccceeccccCCCcceEEEEEhH
Confidence 46889999999864
No 74
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.78 E-value=4.9e-18 Score=94.82 Aligned_cols=84 Identities=25% Similarity=0.391 Sum_probs=71.2
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCCC
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDC 90 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~~ 90 (101)
|.|.|.+| +|+. .+..+.+|||+.+.+++...++|+++.++.+|.|+|++.|.+. ....+.|++|+++..++++
T Consensus 1 l~v~vi~a~~L~~---~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~ 77 (115)
T cd04040 1 LTVDVISAENLPS---ADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDD 77 (115)
T ss_pred CEEEEEeeeCCCC---CCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCC
Confidence 46788888 6776 3445778999999997665689999999999999999999987 3578999999999888899
Q ss_pred eeEEEEEECC
Q psy16330 91 TIGEKRLNTS 100 (101)
Q Consensus 91 ~iG~~~~~l~ 100 (101)
+||++.+++.
T Consensus 78 ~iG~~~~~l~ 87 (115)
T cd04040 78 LLGSAYIDLS 87 (115)
T ss_pred ceEEEEEEHH
Confidence 9999999864
No 75
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.78 E-value=9.5e-18 Score=94.84 Aligned_cols=85 Identities=28% Similarity=0.469 Sum_probs=72.1
Q ss_pred ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecC-CCCCeeceEEEEEeC-C----CCEEEEEEEeCC
Q psy16330 12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKN-TYQPKWNEEFTVLVS-P----YSIILFRLLDHR 84 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~-~----~~~l~~~v~~~~ 84 (101)
+.|.|+|.+| +|++ .+..+.+|||+.+.+++. .++|++.++ +.+|.|++.|.|.+. + ...|.|+|||.+
T Consensus 1 g~L~V~V~~A~~L~~---~~~~~~~dpyv~v~~~~~-~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~ 76 (124)
T cd04049 1 GTLEVLLISAKGLQD---TDFLGKIDPYVIIQCRTQ-ERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD 76 (124)
T ss_pred CeEEEEEEecCCCCC---CCCCCCcCceEEEEECCE-eeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc
Confidence 4688999999 6876 345578999999998766 478888875 899999999999987 3 468999999999
Q ss_pred CCCCCCeeEEEEEECC
Q psy16330 85 TFRRDCTIGEKRLNTS 100 (101)
Q Consensus 85 ~~~~~~~iG~~~~~l~ 100 (101)
.++.+++||++.+++.
T Consensus 77 ~~~~d~~iG~~~i~l~ 92 (124)
T cd04049 77 NFSDDDFIGEATIHLK 92 (124)
T ss_pred cCCCCCeEEEEEEEhH
Confidence 9888999999999875
No 76
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.77 E-value=6.6e-18 Score=95.23 Aligned_cols=78 Identities=22% Similarity=0.303 Sum_probs=67.9
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCCC
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDC 90 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~~ 90 (101)
|.|+|.+| +|+. . .+|||+++.+++. +.+|++++++.||.|+|+|.|.+. ....|.++|||.+.. .++
T Consensus 2 L~V~Vi~a~~L~~---~----~~Dpyv~v~l~~~-~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~ 72 (121)
T cd08378 2 LYVRVVKARGLPA---N----SNDPVVEVKLGNY-KGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDD 72 (121)
T ss_pred EEEEEEEecCCCc---c----cCCCEEEEEECCc-cccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCc
Confidence 78899999 6765 2 5799999999875 589999999999999999999986 467899999999877 788
Q ss_pred eeEEEEEECC
Q psy16330 91 TIGEKRLNTS 100 (101)
Q Consensus 91 ~iG~~~~~l~ 100 (101)
+||++.++++
T Consensus 73 ~lG~~~i~l~ 82 (121)
T cd08378 73 FLGGVCFDLS 82 (121)
T ss_pred eeeeEEEEhH
Confidence 9999999875
No 77
>KOG0696|consensus
Probab=99.77 E-value=5.2e-19 Score=115.75 Aligned_cols=88 Identities=22% Similarity=0.265 Sum_probs=75.6
Q ss_pred ccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC----CcCceeeeeecCCCCCeeceEEEEEeC---CCCEEEEEEE
Q psy16330 10 SVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLVS---PYSIILFRLL 81 (101)
Q Consensus 10 ~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~----~~~~~~T~~~~~~~~P~w~e~~~~~~~---~~~~l~~~v~ 81 (101)
....|+|+|..| +|.+ ++.+|.+|||+++.+- +..+++|++++.++||+|||+|+|.+. .+..|.|+||
T Consensus 178 ~~~~l~v~i~ea~NLiP---MDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvW 254 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIP---MDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVW 254 (683)
T ss_pred cCceEEEEehhhccccc---cCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEe
Confidence 456788888888 7777 4788999999999862 345689999999999999999999997 4679999999
Q ss_pred eCCCCCCCCeeEEEEEECC
Q psy16330 82 DHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 82 ~~~~~~~~~~iG~~~~~l~ 100 (101)
|||..++++|+|+.++.++
T Consensus 255 DWDrTsRNDFMGslSFgis 273 (683)
T KOG0696|consen 255 DWDRTSRNDFMGSLSFGIS 273 (683)
T ss_pred cccccccccccceecccHH
Confidence 9999999999999888654
No 78
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.77 E-value=6.8e-18 Score=95.53 Aligned_cols=84 Identities=21% Similarity=0.257 Sum_probs=71.5
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeec-CCCCCeeceEEEEEeC-C-----CCEEEEEEEeCCC
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVK-NTYQPKWNEEFTVLVS-P-----YSIILFRLLDHRT 85 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~-~-----~~~l~~~v~~~~~ 85 (101)
|.|+|..| +|+. .+..+.+|||+.+.+++..+++|++.. ++.+|.|+|.|.|.+. + ...|.|++||++.
T Consensus 2 L~V~V~sA~~L~~---~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 2 LEITIISAEDLKN---VNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred EEEEEEEcccCCC---CCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 78899999 6876 355678999999999874468999886 4899999999999987 3 4799999999998
Q ss_pred CCCCCeeEEEEEECC
Q psy16330 86 FRRDCTIGEKRLNTS 100 (101)
Q Consensus 86 ~~~~~~iG~~~~~l~ 100 (101)
.+.+++||++.+++.
T Consensus 79 ~~~~~~lG~~~i~l~ 93 (125)
T cd04051 79 SLGDKLIGEVRVPLK 93 (125)
T ss_pred CCCCCcEEEEEEEHH
Confidence 888999999999874
No 79
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.77 E-value=2.2e-17 Score=94.69 Aligned_cols=82 Identities=18% Similarity=0.303 Sum_probs=69.2
Q ss_pred ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-----------CCCEEEEE
Q psy16330 12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-----------PYSIILFR 79 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-----------~~~~l~~~ 79 (101)
++|+|.|..| +|+. .+..+.+|||+++.+++. +++|++++++.||.|+|.+.|... ....|.++
T Consensus 1 ~~l~v~V~~a~~L~~---~d~~g~~dpyv~v~~~~~-~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~ 76 (135)
T cd04017 1 FQLRAYIYQARDLLA---ADKSGLSDPFARVSFLNQ-SQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE 76 (135)
T ss_pred CEEEEEEEEeecCcC---CCCCCCCCCEEEEEECCe-eeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence 4789999999 6876 355678999999998766 589999999999999999988742 12478999
Q ss_pred EEeCCCCCCCCeeEEEEE
Q psy16330 80 LLDHRTFRRDCTIGEKRL 97 (101)
Q Consensus 80 v~~~~~~~~~~~iG~~~~ 97 (101)
|||.+..++|++||++.+
T Consensus 77 V~d~d~~~~d~~iG~~~i 94 (135)
T cd04017 77 LFDQDSVGKDEFLGRSVA 94 (135)
T ss_pred EEeCcCCCCCccceEEEe
Confidence 999999989999999986
No 80
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.76 E-value=2.2e-17 Score=93.68 Aligned_cols=82 Identities=24% Similarity=0.267 Sum_probs=68.1
Q ss_pred ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CC-CEEEEEEEeCCCCCC
Q psy16330 12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PY-SIILFRLLDHRTFRR 88 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~-~~l~~~v~~~~~~~~ 88 (101)
..|.|.|.+| +|+.. +.+||||.+.+++....+|++. ++.+|.|||.|.|... +. ..+.|.+||++..++
T Consensus 4 ~~L~V~Vi~A~~L~~~------~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 4 RSLQLNVLEAHKLPVK------HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eEEEEEEEEeeCCCCC------CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 4689999999 68652 3579999999987655788874 5899999999999865 32 578999999999999
Q ss_pred CCeeEEEEEECC
Q psy16330 89 DCTIGEKRLNTS 100 (101)
Q Consensus 89 ~~~iG~~~~~l~ 100 (101)
+++||.+.++|+
T Consensus 77 d~~iG~v~i~l~ 88 (126)
T cd08400 77 DSEIAEVTVQLS 88 (126)
T ss_pred CCeEEEEEEEHh
Confidence 999999999975
No 81
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.76 E-value=2.2e-17 Score=92.81 Aligned_cols=87 Identities=24% Similarity=0.298 Sum_probs=70.8
Q ss_pred ceEEEEEEee-EeCCCCCCC---CCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCC
Q psy16330 12 LQLLQLVECA-HLRRGGQGG---GLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRT 85 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~~---~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~ 85 (101)
+.|.|+|.+| +|+...... ..+.+||||.+++++. .++|++++++.+|.|+|.|.|.+. ....|.|++||.+.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~-~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQ-TFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCE-eEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence 3588999999 687631100 1256899999999875 599999999999999999999886 36799999999998
Q ss_pred CCCCCeeEEEEEECC
Q psy16330 86 FRRDCTIGEKRLNTS 100 (101)
Q Consensus 86 ~~~~~~iG~~~~~l~ 100 (101)
. ++++||.+.++++
T Consensus 80 ~-~~~~iG~~~i~l~ 93 (121)
T cd08391 80 D-KDDFLGRLSIDLG 93 (121)
T ss_pred C-CCCcEEEEEEEHH
Confidence 8 8899999999874
No 82
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.75 E-value=3.9e-17 Score=93.11 Aligned_cols=91 Identities=23% Similarity=0.272 Sum_probs=74.8
Q ss_pred cccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeCC---CCEE
Q psy16330 5 QDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP---YSII 76 (101)
Q Consensus 5 ~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~~---~~~l 76 (101)
-.|.. +.|.|+|.+| +|+. .+..+.+|||+.+.+.+ ...++|++++++.+|.|+++|.|.+.. ...|
T Consensus 8 ~~~~~--~~l~v~i~~a~nL~~---~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l 82 (131)
T cd04026 8 ISVKD--NKLTVEVREAKNLIP---MDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRL 82 (131)
T ss_pred EEECC--CEEEEEEEEeeCCCC---cCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEE
Confidence 35555 7799999999 6876 34456789999998753 235899999999999999999999872 4689
Q ss_pred EEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 77 LFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 77 ~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
.|++|+.+..+.+++||++.++++
T Consensus 83 ~v~v~d~~~~~~~~~iG~~~~~l~ 106 (131)
T cd04026 83 SIEVWDWDRTTRNDFMGSLSFGVS 106 (131)
T ss_pred EEEEEECCCCCCcceeEEEEEeHH
Confidence 999999998888999999999864
No 83
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.75 E-value=5.4e-17 Score=94.67 Aligned_cols=84 Identities=18% Similarity=0.303 Sum_probs=65.7
Q ss_pred EEEEEEee-E--eCCCCCCCCCCCCCcEEEEEE----CCcCceeeeeecCCCCCeeceEEEEEeCC----------CCEE
Q psy16330 14 LLQLVECA-H--LRRGGQGGGLLKPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP----------YSII 76 (101)
Q Consensus 14 l~v~i~~a-~--l~~~~~~~~~~~~dpy~~v~~----~~~~~~~T~~~~~~~~P~w~e~~~~~~~~----------~~~l 76 (101)
+.++|..+ + ++. ....+..||||++++ .+..+.+|++++++.||+|||+|.|.+.. ...|
T Consensus 4 ~el~i~~~~~~~l~~---~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 4 IELTIVRCIGIPLPS---GWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred eEEEEEEeeccccCC---CcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence 34555555 3 555 233467899999986 33446899999999999999999999862 3479
Q ss_pred EEEEEeCCCC-CCCCeeEEEEEECC
Q psy16330 77 LFRLLDHRTF-RRDCTIGEKRLNTS 100 (101)
Q Consensus 77 ~~~v~~~~~~-~~~~~iG~~~~~l~ 100 (101)
.+++|+.+.+ ++|++||++.++|+
T Consensus 81 ~~~V~d~~~f~~~D~~iG~~~i~L~ 105 (155)
T cd08690 81 KFEVYHKGGFLRSDKLLGTAQVKLE 105 (155)
T ss_pred EEEEEeCCCcccCCCeeEEEEEEcc
Confidence 9999999886 57999999999986
No 84
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.75 E-value=4.4e-17 Score=95.02 Aligned_cols=88 Identities=24% Similarity=0.224 Sum_probs=72.9
Q ss_pred ccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc----------------------------CceeeeeecC
Q psy16330 6 DYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK----------------------------NPKTTRVVKN 56 (101)
Q Consensus 6 ~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~----------------------------~~~~T~~~~~ 56 (101)
.+.+..+.|.|+|.+| +|+. .+..|.+||||++.+... ..++|+++.+
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~---~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~ 98 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLA---KDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ 98 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcc---cCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC
Confidence 4567789999999999 6776 355688999999987421 2378999999
Q ss_pred CCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 57 TYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 57 ~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
+.+|.|+|.|.|.+. ....|.|+|||++ +++||++.++++
T Consensus 99 tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~ 140 (153)
T cd08676 99 TLNPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLK 140 (153)
T ss_pred CCCCccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHH
Confidence 999999999999987 3578999999987 789999999874
No 85
>KOG1028|consensus
Probab=99.74 E-value=5.5e-17 Score=107.51 Aligned_cols=96 Identities=26% Similarity=0.290 Sum_probs=83.1
Q ss_pred ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--CcCceeeeeecCCCCCeeceEEEEEeC----CCC
Q psy16330 2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--YKNPKTTRVVKNTYQPKWNEEFTVLVS----PYS 74 (101)
Q Consensus 2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~~~~~~T~~~~~~~~P~w~e~~~~~~~----~~~ 74 (101)
.+..+|......|.|+|..| +|+.. +..|.+|||+++++. ...+.+|++.+++++|.|+|+|.|.+. ...
T Consensus 157 ~fsl~Yd~~~~~L~V~V~qa~~Lp~~---d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~ 233 (421)
T KOG1028|consen 157 QFSLQYDFELNLLTVRVIQAHDLPAK---DRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNR 233 (421)
T ss_pred EEEEEecccCCEEEEEEEEecCCCcc---cCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccC
Confidence 46778999999999999999 68873 433578999999975 334689999999999999999999976 567
Q ss_pred EEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 75 IILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 75 ~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
.|.++||++|+++++++||++.++|.
T Consensus 234 ~L~l~V~~~drfsr~~~iGev~~~l~ 259 (421)
T KOG1028|consen 234 VLHLSVYDFDRFSRHDFIGEVILPLG 259 (421)
T ss_pred EEEEEEEecCCcccccEEEEEEecCc
Confidence 99999999999999999999999864
No 86
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.74 E-value=5.5e-17 Score=93.27 Aligned_cols=83 Identities=23% Similarity=0.281 Sum_probs=69.3
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC---cCceeeeeecCCCCCeeceEEEEEeCC-----------------
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY---KNPKTTRVVKNTYQPKWNEEFTVLVSP----------------- 72 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~---~~~~~T~~~~~~~~P~w~e~~~~~~~~----------------- 72 (101)
|.|.|.+| +|+. . ..+.+|||+.+.+.. ...++|++++++.+|.|+|.|.|.+..
T Consensus 1 L~V~Vi~A~~L~~---~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~ 76 (137)
T cd08675 1 LSVRVLECRDLAL---K-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLE 76 (137)
T ss_pred CEEEEEEccCCCc---c-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccc
Confidence 46788888 6766 3 457899999999873 335899999999999999999998762
Q ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 73 YSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
...|.|++||.+..+++++||++.+++.
T Consensus 77 ~~~l~i~V~d~~~~~~~~~IG~~~i~l~ 104 (137)
T cd08675 77 KSELRVELWHASMVSGDDFLGEVRIPLQ 104 (137)
T ss_pred ccEEEEEEEcCCcCcCCcEEEEEEEehh
Confidence 2489999999998888999999999875
No 87
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.73 E-value=9e-17 Score=89.10 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=65.4
Q ss_pred EEEEEEeeEeCCCCCCCCCCCCCcEEEEEECCc-----CceeeeeecCCCCCeeceEEEEEeC------CCCEEEEEEEe
Q psy16330 14 LLQLVECAHLRRGGQGGGLLKPNPYIELYVDYK-----NPKTTRVVKNTYQPKWNEEFTVLVS------PYSIILFRLLD 82 (101)
Q Consensus 14 l~v~i~~a~l~~~~~~~~~~~~dpy~~v~~~~~-----~~~~T~~~~~~~~P~w~e~~~~~~~------~~~~l~~~v~~ 82 (101)
+.+.+.+.+|+. .+..+.+|||+++++.+. ..++|++++++.+|.|+ .|.+... ....|.|+|||
T Consensus 3 ~~~~i~a~~L~~---~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d 78 (110)
T cd04047 3 VELQFSGKKLDK---KDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYD 78 (110)
T ss_pred EEEEEEeCCCCC---CCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEE
Confidence 444555557876 355678999999987433 24899999999999999 6666543 25699999999
Q ss_pred CCCCCCCCeeEEEEEECC
Q psy16330 83 HRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 83 ~~~~~~~~~iG~~~~~l~ 100 (101)
++..++|++||++.++++
T Consensus 79 ~d~~~~d~~iG~~~~~l~ 96 (110)
T cd04047 79 YDSSGKHDLIGEFETTLD 96 (110)
T ss_pred eCCCCCCcEEEEEEEEHH
Confidence 999999999999999874
No 88
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.73 E-value=1.9e-16 Score=90.94 Aligned_cols=83 Identities=23% Similarity=0.426 Sum_probs=67.5
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC-c-----------CceeeeeecCCCCCee-ceEEEEEeCCCCEEEEE
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY-K-----------NPKTTRVVKNTYQPKW-NEEFTVLVSPYSIILFR 79 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~-~-----------~~~~T~~~~~~~~P~w-~e~~~~~~~~~~~l~~~ 79 (101)
..|.+.+| +|+. +.+|.+|||+++.+.. . ++++|++++++.||.| +|.|.|.+.....|.++
T Consensus 3 ~~~~~~~A~~L~~----~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~~~L~v~ 78 (137)
T cd08691 3 FSLSGLQARNLKK----GMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPTDVLEIE 78 (137)
T ss_pred EEEEEEEeCCCCC----ccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCCCEEEEE
Confidence 46777888 6764 4568899999998742 1 2589999999999999 99999998877799999
Q ss_pred EEeCCCCCC---CCeeEEEEEECC
Q psy16330 80 LLDHRTFRR---DCTIGEKRLNTS 100 (101)
Q Consensus 80 v~~~~~~~~---~~~iG~~~~~l~ 100 (101)
|||++..++ +++||++.++++
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~ 102 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQ 102 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHH
Confidence 999765333 689999999874
No 89
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=3.9e-16 Score=88.58 Aligned_cols=69 Identities=23% Similarity=0.281 Sum_probs=61.2
Q ss_pred CCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC----CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 31 GLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 31 ~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~----~~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
..+.+|||+++.+++. +++|++++++.+|.|+|.|.|.+. ....|.|+||+++..+++++||++.++++
T Consensus 11 ~~g~~Dpyv~v~~~~~-~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~ 83 (127)
T cd08373 11 LKGKGDRIAKVTFRGV-KKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQ 83 (127)
T ss_pred cCCCCCCEEEEEECCE-eeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhh
Confidence 3467899999999876 489999999999999999999985 35789999999999888999999999875
No 90
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.67 E-value=9.8e-16 Score=80.72 Aligned_cols=80 Identities=33% Similarity=0.526 Sum_probs=67.4
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCc--eeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCC
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNP--KTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRR 88 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~--~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~ 88 (101)
|.|+|.+| +|+. .+..+..+||+.+.+.+... ++|++..++.+|.|++.+.|.+. ....|.|+||+.+..++
T Consensus 1 L~v~I~~a~~L~~---~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~ 77 (85)
T PF00168_consen 1 LTVTIHSARNLPS---KDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGK 77 (85)
T ss_dssp EEEEEEEEESSSS---SSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSS
T ss_pred CEEEEEEEECCCC---cccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCC
Confidence 67899999 5766 34456789999999876443 99999999999999999999976 45579999999999988
Q ss_pred CCeeEEEE
Q psy16330 89 DCTIGEKR 96 (101)
Q Consensus 89 ~~~iG~~~ 96 (101)
+++||++.
T Consensus 78 ~~~iG~~~ 85 (85)
T PF00168_consen 78 DELIGEVK 85 (85)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEEC
Confidence 99999973
No 91
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=6.7e-16 Score=85.84 Aligned_cols=69 Identities=32% Similarity=0.397 Sum_probs=60.3
Q ss_pred CCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 31 GLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 31 ~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
..|.+||||.+.+++...++|++++++.+|.|+|.|.|.+. ....|.|.+|+.+.+ ++++||.+.++|+
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~ 79 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLN 79 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHH
Confidence 34778999999998765589999999999999999999887 356799999999988 8999999999874
No 92
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.67 E-value=2.7e-15 Score=84.99 Aligned_cols=85 Identities=27% Similarity=0.373 Sum_probs=68.5
Q ss_pred ceEEEEEEee-EeCCCCCCC--CCCCCCcEEEEEECC-----cCceeeeeecCCC-CCeeceEEEEEeC-C-CCEEEEEE
Q psy16330 12 LQLLQLVECA-HLRRGGQGG--GLLKPNPYIELYVDY-----KNPKTTRVVKNTY-QPKWNEEFTVLVS-P-YSIILFRL 80 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~~--~~~~~dpy~~v~~~~-----~~~~~T~~~~~~~-~P~w~e~~~~~~~-~-~~~l~~~v 80 (101)
.+|+|+|.+| +|+.. + ..+..|||+.+++.+ ..+++|+++.++. +|.|+|+|.|.+. + ...|.++|
T Consensus 2 ~~l~v~vi~a~~L~~~---~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V 78 (128)
T cd00275 2 LTLTIKIISGQQLPKP---KGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVV 78 (128)
T ss_pred eEEEEEEEeeecCCCC---CCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEE
Confidence 4689999999 68763 3 357789999998732 2358999988765 9999999999876 3 34799999
Q ss_pred EeCCCCCCCCeeEEEEEECC
Q psy16330 81 LDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 81 ~~~~~~~~~~~iG~~~~~l~ 100 (101)
|+.+.. ++++||++.++++
T Consensus 79 ~d~~~~-~~~~iG~~~~~l~ 97 (128)
T cd00275 79 YDEDSG-DDDFLGQACLPLD 97 (128)
T ss_pred EeCCCC-CCcEeEEEEEEhH
Confidence 999988 8899999999874
No 93
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.61 E-value=1.2e-14 Score=81.20 Aligned_cols=78 Identities=28% Similarity=0.395 Sum_probs=62.3
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCC----CCEEEEEEEeCCCCCC
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRTFRR 88 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~----~~~l~~~v~~~~~~~~ 88 (101)
|.|+|..| +|+. . +.+|||+.+.+++...++|+++++ .+|.|+|+|.|.+.. ...|.+.+|+.+....
T Consensus 2 L~v~vi~a~~l~~----~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~ 74 (117)
T cd08383 2 LRLRILEAKNLPS----K--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDR 74 (117)
T ss_pred eEEEEEEecCCCc----C--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCC
Confidence 67888898 5765 2 678999999998765589999988 999999999999873 2467888898876666
Q ss_pred CCeeEEEEEE
Q psy16330 89 DCTIGEKRLN 98 (101)
Q Consensus 89 ~~~iG~~~~~ 98 (101)
+.++|.+.+.
T Consensus 75 ~~~~g~v~l~ 84 (117)
T cd08383 75 DIVIGKVALS 84 (117)
T ss_pred eeEEEEEEec
Confidence 6677776654
No 94
>PLN03008 Phospholipase D delta
Probab=99.61 E-value=3.7e-15 Score=104.07 Aligned_cols=67 Identities=27% Similarity=0.629 Sum_probs=60.0
Q ss_pred CCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 33 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 33 ~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
+.+|||+.|.+++.++.||++++++.||.|||+|.|.+. +...|.|+|||.+.++ +++||++.++++
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~ 142 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVR 142 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHH
Confidence 467999999998776679999999999999999999997 5779999999999996 579999999875
No 95
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.60 E-value=4e-15 Score=111.21 Aligned_cols=84 Identities=20% Similarity=0.381 Sum_probs=71.2
Q ss_pred cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-C--CCEEEEEEEeCCCC
Q psy16330 11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-P--YSIILFRLLDHRTF 86 (101)
Q Consensus 11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~--~~~l~~~v~~~~~~ 86 (101)
.+.|.|+|.+| +|. ..++.+||||.+.+++..+.+|++++++.||.|+|+|+|.+. + ...+.++|||+|.+
T Consensus 1979 ~G~L~V~V~~a~nl~-----~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK-----QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred CcceEEEEeeccccc-----cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence 47789999999 564 346889999999999765689999999999999999998776 3 35799999999999
Q ss_pred CCCCeeEEEEEECC
Q psy16330 87 RRDCTIGEKRLNTS 100 (101)
Q Consensus 87 ~~~~~iG~~~~~l~ 100 (101)
++| .+|.+++++.
T Consensus 2054 ~kd-~~G~~~i~l~ 2066 (2102)
T PLN03200 2054 GKS-SLGKVTIQID 2066 (2102)
T ss_pred CCC-CCceEEEEHH
Confidence 554 9999999874
No 96
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.58 E-value=4.3e-14 Score=81.78 Aligned_cols=83 Identities=23% Similarity=0.203 Sum_probs=67.6
Q ss_pred ccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCC-C
Q psy16330 10 SVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRT-F 86 (101)
Q Consensus 10 ~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~-~ 86 (101)
....|.|.|.+| +|+. ..+|||.+.+++....||+++.++.+|.|+|.|.|... +...+.|.+|..+. .
T Consensus 9 ~~~sL~v~V~EAk~Lp~--------~~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~ 80 (146)
T cd04013 9 TENSLKLWIIEAKGLPP--------KKRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEEccCCCC--------cCCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc
Confidence 346788999999 5765 23799999999987789999999999999999999765 45789999986543 2
Q ss_pred C---CCCeeEEEEEECC
Q psy16330 87 R---RDCTIGEKRLNTS 100 (101)
Q Consensus 87 ~---~~~~iG~~~~~l~ 100 (101)
+ .+++||.+.++++
T Consensus 81 ~~~~~~~~IG~V~Ip~~ 97 (146)
T cd04013 81 KKKDKSQLIGTVNIPVT 97 (146)
T ss_pred ccccCCcEEEEEEEEHH
Confidence 2 5789999999874
No 97
>KOG1028|consensus
Probab=99.56 E-value=6.2e-14 Score=93.15 Aligned_cols=94 Identities=26% Similarity=0.263 Sum_probs=78.6
Q ss_pred eecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC--C--cCceeeeeecCCCCCeeceEEEEEeC----CC
Q psy16330 3 LLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD--Y--KNPKTTRVVKNTYQPKWNEEFTVLVS----PY 73 (101)
Q Consensus 3 ~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~--~--~~~~~T~~~~~~~~P~w~e~~~~~~~----~~ 73 (101)
+...|.+..++|.|.|..| +|+. .+..+..||||++.+- . ..+++|.+.+++.||+|||+|.|.++ ..
T Consensus 289 ~sL~Y~p~~g~ltv~v~kar~L~~---~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~ 365 (421)
T KOG1028|consen 289 LSLCYLPTAGRLTVVVIKARNLKS---MDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAE 365 (421)
T ss_pred EEEEeecCCCeEEEEEEEecCCCc---ccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhhe
Confidence 3457999999999999999 7877 3566778999999752 2 23588999999999999999999887 34
Q ss_pred CEEEEEEEeCCCCCCCCeeEEEEEEC
Q psy16330 74 SIILFRLLDHRTFRRDCTIGEKRLNT 99 (101)
Q Consensus 74 ~~l~~~v~~~~~~~~~~~iG~~~~~l 99 (101)
..+.++||+++.++++++||++.+..
T Consensus 366 ~~l~l~V~d~d~~~~~~~iG~~~lG~ 391 (421)
T KOG1028|consen 366 VSLELTVWDHDTLGSNDLIGRCILGS 391 (421)
T ss_pred eEEEEEEEEcccccccceeeEEEecC
Confidence 58999999999999999999987754
No 98
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.54 E-value=4.2e-13 Score=72.23 Aligned_cols=84 Identities=33% Similarity=0.506 Sum_probs=68.8
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc--CceeeeeecCCCCCeeceEEEEEeCC--CCEEEEEEEeCCCCCC
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK--NPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRR 88 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~--~~~~T~~~~~~~~P~w~e~~~~~~~~--~~~l~~~v~~~~~~~~ 88 (101)
+.+.|.++ ++... ...+..+||+.+.+... ...+|+.+.++.+|.|++.+.|.+.. ...|.|++|+.+..+.
T Consensus 2 l~i~i~~~~~l~~~---~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~ 78 (101)
T smart00239 2 LTVKIISARNLPKK---DKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGR 78 (101)
T ss_pred eEEEEEEeeCCCCC---CCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccC
Confidence 56788888 56552 23356899999998754 46899999999999999999999984 7899999999988777
Q ss_pred CCeeEEEEEECC
Q psy16330 89 DCTIGEKRLNTS 100 (101)
Q Consensus 89 ~~~iG~~~~~l~ 100 (101)
+.++|.+.+++.
T Consensus 79 ~~~~G~~~~~l~ 90 (101)
T smart00239 79 DDFIGQVTIPLS 90 (101)
T ss_pred CceeEEEEEEHH
Confidence 899999998863
No 99
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.53 E-value=4e-13 Score=76.62 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=67.0
Q ss_pred EEEEEEee-EeCCCCCCCCCC--CCCcEEEEEECC--cCceeeeeecCCCC--CeeceEEEEEeCC--------------
Q psy16330 14 LLQLVECA-HLRRGGQGGGLL--KPNPYIELYVDY--KNPKTTRVVKNTYQ--PKWNEEFTVLVSP-------------- 72 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~--~~dpy~~v~~~~--~~~~~T~~~~~~~~--P~w~e~~~~~~~~-------------- 72 (101)
|.|.|-.+ +++... ....| .+||||++.+.+ ..+++|.++.++++ |.||+.|.|.+..
T Consensus 2 LRViIw~~~~v~~~~-~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDD-TNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCcccc-cccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 67777777 543210 12234 489999998865 34699999999999 9999999987641
Q ss_pred -----------CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 73 -----------YSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 73 -----------~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
...|.+++||.|.+++|++||+++++|+
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~ 119 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLS 119 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhh
Confidence 2478999999999999999999999875
No 100
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.48 E-value=2.1e-12 Score=69.20 Aligned_cols=84 Identities=31% Similarity=0.388 Sum_probs=68.4
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCC--CCEEEEEEEeCCCCCCCC
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSP--YSIILFRLLDHRTFRRDC 90 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~--~~~l~~~v~~~~~~~~~~ 90 (101)
|.|.|.++ ++.. .......+||+.+.+.+...++|.+..++.+|.|++.+.+.+.. ...+.+++|+.+..+.+.
T Consensus 1 l~v~i~~~~~l~~---~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 77 (102)
T cd00030 1 LRVTVIEARNLPA---KDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDD 77 (102)
T ss_pred CEEEEEeeeCCCC---cCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCc
Confidence 35777888 4544 23345689999999887445899999999999999999999875 679999999998887788
Q ss_pred eeEEEEEECC
Q psy16330 91 TIGEKRLNTS 100 (101)
Q Consensus 91 ~iG~~~~~l~ 100 (101)
++|++.+++.
T Consensus 78 ~ig~~~~~l~ 87 (102)
T cd00030 78 FLGEVEIPLS 87 (102)
T ss_pred eeEEEEEeHH
Confidence 9999998864
No 101
>KOG1011|consensus
Probab=99.44 E-value=2.1e-13 Score=93.41 Aligned_cols=85 Identities=24% Similarity=0.359 Sum_probs=71.0
Q ss_pred cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCC--
Q psy16330 11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTF-- 86 (101)
Q Consensus 11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~-- 86 (101)
...+.+++.|| .|.. .+..|.+|||+.+.++.. +.||+++...+||+|+|.|+|.+. ....|++.|||.|+.
T Consensus 294 sakitltvlcaqgl~a---kdktg~sdpyvt~qv~kt-krrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlk 369 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIA---KDKTGKSDPYVTAQVGKT-KRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLK 369 (1283)
T ss_pred ceeeEEeeeeccccee---cccCCCCCCcEEEeeccc-chhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHH
Confidence 45678899999 5654 356689999999998877 599999999999999999999998 566999999998753
Q ss_pred ---------CCCCeeEEEEEEC
Q psy16330 87 ---------RRDCTIGEKRLNT 99 (101)
Q Consensus 87 ---------~~~~~iG~~~~~l 99 (101)
.+|+|+|+..+.+
T Consensus 370 sklrqkl~resddflgqtviev 391 (1283)
T KOG1011|consen 370 SKLRQKLTRESDDFLGQTVIEV 391 (1283)
T ss_pred HHHHHHhhhcccccccceeEEE
Confidence 4588999987764
No 102
>PLN02223 phosphoinositide phospholipase C
Probab=99.37 E-value=1.1e-11 Score=83.86 Aligned_cols=89 Identities=26% Similarity=0.353 Sum_probs=67.2
Q ss_pred ceEEEEEEee-EeCCCCC-C-CCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC-CCC-EEEEEEEe
Q psy16330 12 LQLLQLVECA-HLRRGGQ-G-GGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS-PYS-IILFRLLD 82 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~-~-~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~-~l~~~v~~ 82 (101)
..|.|+|..+ .++.... . +.....||||+|.+.| ..+++|.+..++.||.|+|+|.|.+. ++. -|.|.|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 4688888888 4532110 1 1234579999998754 22467877778999999999999987 444 68999999
Q ss_pred CCCCCCCCeeEEEEEECC
Q psy16330 83 HRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 83 ~~~~~~~~~iG~~~~~l~ 100 (101)
.|..+.++|+|++.+|++
T Consensus 489 ~D~~~~ddfiGQ~~LPv~ 506 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVS 506 (537)
T ss_pred cCCCCCCcEEEEEecchH
Confidence 998888999999999874
No 103
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.36 E-value=2.8e-12 Score=91.76 Aligned_cols=87 Identities=24% Similarity=0.394 Sum_probs=75.1
Q ss_pred cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCC
Q psy16330 11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFR 87 (101)
Q Consensus 11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~ 87 (101)
++.|++.+..+ +|+. .+..+.+||||.+.+.++..++|+++++++||.|||++...+. ....+.+.++|++...
T Consensus 1039 sG~l~I~~~~~~nl~~---~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~ 1115 (1227)
T COG5038 1039 SGYLTIMLRSGENLPS---SDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGE 1115 (1227)
T ss_pred cCcEEEEEeccCCCcc---cccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCC
Confidence 56788888888 6876 3556779999999998887799999999999999999999887 3457889999999988
Q ss_pred CCCeeEEEEEECC
Q psy16330 88 RDCTIGEKRLNTS 100 (101)
Q Consensus 88 ~~~~iG~~~~~l~ 100 (101)
+++.+|.+.++|+
T Consensus 1116 knd~lg~~~idL~ 1128 (1227)
T COG5038 1116 KNDLLGTAEIDLS 1128 (1227)
T ss_pred CccccccccccHh
Confidence 9999999999875
No 104
>KOG2059|consensus
Probab=99.32 E-value=6.8e-12 Score=86.14 Aligned_cols=84 Identities=21% Similarity=0.274 Sum_probs=74.0
Q ss_pred cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCC
Q psy16330 11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRR 88 (101)
Q Consensus 11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~ 88 (101)
...|.++|.+| +|+. .+..|..||||.|.++.+...||.++.+++.|-|+|++.|.++ .-..|.|=|||.| +++
T Consensus 4 ~~sl~vki~E~knL~~---~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~ 79 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPS---YGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKR 79 (800)
T ss_pred ccceeEEEeecccCCC---CCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccc
Confidence 35689999999 7877 4666889999999999887899999999999999999999998 4568999999999 999
Q ss_pred CCeeEEEEEE
Q psy16330 89 DCTIGEKRLN 98 (101)
Q Consensus 89 ~~~iG~~~~~ 98 (101)
|+.||.+.+.
T Consensus 80 D~~IGKvai~ 89 (800)
T KOG2059|consen 80 DDIIGKVAIK 89 (800)
T ss_pred ccccceeeee
Confidence 9999997764
No 105
>PLN02952 phosphoinositide phospholipase C
Probab=99.30 E-value=6.1e-11 Score=81.44 Aligned_cols=90 Identities=21% Similarity=0.309 Sum_probs=68.1
Q ss_pred cceEEEEEEee-EeCCCCC---CCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC-CC-CEEEEEE
Q psy16330 11 VLQLLQLVECA-HLRRGGQ---GGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS-PY-SIILFRL 80 (101)
Q Consensus 11 ~~~l~v~i~~a-~l~~~~~---~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~-~~-~~l~~~v 80 (101)
...|.|+|..+ .++.... .+.....|||++|.+-+ ..+.+|+++.++.+|.|+++|.|.+. ++ .-+.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 35788888888 4432110 12223469999998743 23579999999999999999999887 33 4688999
Q ss_pred EeCCCCCCCCeeEEEEEECC
Q psy16330 81 LDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 81 ~~~~~~~~~~~iG~~~~~l~ 100 (101)
||+|..+.++|+|++.+|++
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~ 568 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVS 568 (599)
T ss_pred EecCCCCCCCeEEEEEcchh
Confidence 99998888999999999875
No 106
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.29 E-value=2.8e-11 Score=86.77 Aligned_cols=92 Identities=25% Similarity=0.369 Sum_probs=76.0
Q ss_pred ccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEeCCC
Q psy16330 8 FSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLDHRT 85 (101)
Q Consensus 8 ~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~ 85 (101)
-...+.+.++|..| ++...+. ...+..|||+.+...+....||++.+++.||+|||++.+.+. -...|.+++||.+.
T Consensus 432 ~~aIGVv~vkI~sa~~lk~~d~-~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~ 510 (1227)
T COG5038 432 GTAIGVVEVKIKSAEGLKKSDS-TINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS 510 (1227)
T ss_pred CCeeEEEEEEEeeccCcccccc-cccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence 45678899999999 5765310 134789999999876655679999999999999999877776 67899999999999
Q ss_pred CCCCCeeEEEEEECC
Q psy16330 86 FRRDCTIGEKRLNTS 100 (101)
Q Consensus 86 ~~~~~~iG~~~~~l~ 100 (101)
..+|+.+|.+.++|.
T Consensus 511 ~~sd~vvG~~~l~L~ 525 (1227)
T COG5038 511 FKSDKVVGSTQLDLA 525 (1227)
T ss_pred cCCcceeeeEEechH
Confidence 999999999999875
No 107
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.27 E-value=9.5e-11 Score=80.44 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=67.4
Q ss_pred ceEEEEEEee-EeCCCCCC---CCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC-CC-CEEEEEEE
Q psy16330 12 LQLLQLVECA-HLRRGGQG---GGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS-PY-SIILFRLL 81 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~---~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~-~~-~~l~~~v~ 81 (101)
..|.|+|..+ +++..... +.....||||+|.+-+ ..+.+|++..++.+|.|+|+|.|.+. ++ .-|+|.|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 5788998888 44311001 2224579999998743 22478898889999999999999887 43 47899999
Q ss_pred eCCCCCCCCeeEEEEEECC
Q psy16330 82 DHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 82 ~~~~~~~~~~iG~~~~~l~ 100 (101)
|.|..+.++|+|+..+|++
T Consensus 549 d~d~~~~ddfiGQ~~lPv~ 567 (598)
T PLN02230 549 EHDINEKDDFGGQTCLPVS 567 (598)
T ss_pred ECCCCCCCCEEEEEEcchH
Confidence 9998888999999999874
No 108
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.27 E-value=4.3e-11 Score=65.21 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=59.4
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEEeCCCCCCCCee
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTI 92 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~~~~~~~~~~i 92 (101)
|.|+|.++ ++.---.....+.++||+.+++++..+.||++ +.||.|+|.|.|.+.....+.+.+||.... ..--|
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk~nEiel~VyDk~~~-~~~Pi 76 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEKNNEEEVIVYDKGGD-QPVPV 76 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecCCcEEEEEEEeCCCC-eecce
Confidence 46777777 45331001134678999999998876788887 479999999999998888999999998643 33466
Q ss_pred EEEEEEC
Q psy16330 93 GEKRLNT 99 (101)
Q Consensus 93 G~~~~~l 99 (101)
|..-+.+
T Consensus 77 ~llW~~~ 83 (109)
T cd08689 77 GLLWLRL 83 (109)
T ss_pred eeehhhH
Confidence 6655544
No 109
>KOG0169|consensus
Probab=99.25 E-value=7.1e-11 Score=81.82 Aligned_cols=88 Identities=24% Similarity=0.328 Sum_probs=67.5
Q ss_pred eEEEEEEeeE-eCCCCCCCCC-CCCCcEEEEEECCc----Cceeeeee-cCCCCCeeceEEEEEeC-CC-CEEEEEEEeC
Q psy16330 13 QLLQLVECAH-LRRGGQGGGL-LKPNPYIELYVDYK----NPKTTRVV-KNTYQPKWNEEFTVLVS-PY-SIILFRLLDH 83 (101)
Q Consensus 13 ~l~v~i~~a~-l~~~~~~~~~-~~~dpy~~v~~~~~----~~~~T~~~-~~~~~P~w~e~~~~~~~-~~-~~l~~~v~~~ 83 (101)
.|.|+|..+. .+.......+ ...|||+.|++.|. ...+|+++ .++.+|.|+|+|.|.+. |+ .-|+|.|+|.
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 6999999883 3332112222 35799999987542 35899954 57999999999999998 54 4789999999
Q ss_pred CCCCCCCeeEEEEEECC
Q psy16330 84 RTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 84 ~~~~~~~~iG~~~~~l~ 100 (101)
|..++|+|+|+..+|++
T Consensus 697 d~~~~ddF~GQ~tlP~~ 713 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVS 713 (746)
T ss_pred CCCCcccccceeeccHH
Confidence 99999999999999874
No 110
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.23 E-value=2.1e-10 Score=78.67 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=67.0
Q ss_pred ceEEEEEEee-E--eCCC-CCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC-CC-CEEEEEEE
Q psy16330 12 LQLLQLVECA-H--LRRG-GQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS-PY-SIILFRLL 81 (101)
Q Consensus 12 ~~l~v~i~~a-~--l~~~-~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~-~~-~~l~~~v~ 81 (101)
..|.|+|..+ + |+.. ...+.....|||++|.+.+ ..+.+|+++.++.+|.|+|.|.|.+. ++ .-|.|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 4688888887 3 2221 0011224579999998743 23579999999899999999999876 43 47889999
Q ss_pred eCCCCCCCCeeEEEEEECC
Q psy16330 82 DHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 82 ~~~~~~~~~~iG~~~~~l~ 100 (101)
|.|..+.++|+|++.+|++
T Consensus 532 d~D~~~~ddfigq~~lPv~ 550 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVW 550 (581)
T ss_pred ECCCCCCCcEEEEEEcchh
Confidence 9998888999999999875
No 111
>KOG1264|consensus
Probab=99.18 E-value=2.7e-10 Score=79.91 Aligned_cols=85 Identities=26% Similarity=0.382 Sum_probs=65.8
Q ss_pred ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC-----cCceeeeeecCCCCCeec-eEEEEEeC-C-CCEEEEEEEe
Q psy16330 12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY-----KNPKTTRVVKNTYQPKWN-EEFTVLVS-P-YSIILFRLLD 82 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~-----~~~~~T~~~~~~~~P~w~-e~~~~~~~-~-~~~l~~~v~~ 82 (101)
..|.|.+..| +|++ .+.+.+.||+.|++-| ...+.|.+..+++||+|+ +.|+|++. | --.|+|.|++
T Consensus 1065 ~~lsv~vigaRHL~k----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEec
Confidence 3566778888 6876 2345567999998632 222455566689999999 99999997 3 3478999999
Q ss_pred CCCCCCCCeeEEEEEECC
Q psy16330 83 HRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 83 ~~~~~~~~~iG~~~~~l~ 100 (101)
.|.++...|||++.+|+.
T Consensus 1141 eDmfs~~~FiaqA~yPv~ 1158 (1267)
T KOG1264|consen 1141 EDMFSDPNFLAQATYPVK 1158 (1267)
T ss_pred ccccCCcceeeeeecchh
Confidence 999999899999999864
No 112
>PLN02228 Phosphoinositide phospholipase C
Probab=99.17 E-value=6.1e-10 Score=76.21 Aligned_cols=89 Identities=15% Similarity=0.204 Sum_probs=66.9
Q ss_pred ceEEEEEEee-EeCCCCCCC---CCCCCCcEEEEEECC----cCceeeeeecCCCCCee-ceEEEEEeC-CC-CEEEEEE
Q psy16330 12 LQLLQLVECA-HLRRGGQGG---GLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKW-NEEFTVLVS-PY-SIILFRL 80 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~~---~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w-~e~~~~~~~-~~-~~l~~~v 80 (101)
..|.|+|..+ .++...... .....||||+|.+.+ ..+++|++++++.+|.| +++|.|.+. ++ .-|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 4688999988 442110011 123479999998643 23479999998999999 999999886 43 4788999
Q ss_pred EeCCCCCCCCeeEEEEEECC
Q psy16330 81 LDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 81 ~~~~~~~~~~~iG~~~~~l~ 100 (101)
+|.+..+.++|+|++.++++
T Consensus 511 ~D~d~~~~d~figq~~lPv~ 530 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLP 530 (567)
T ss_pred EeCCCCCCCCEEEEEEcchh
Confidence 99998888999999999874
No 113
>KOG1328|consensus
Probab=99.10 E-value=4.4e-11 Score=82.87 Aligned_cols=94 Identities=23% Similarity=0.304 Sum_probs=73.9
Q ss_pred ecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCc------CceeeeeecCCCCCeeceEEEEEeCC----
Q psy16330 4 LQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYK------NPKTTRVVKNTYQPKWNEEFTVLVSP---- 72 (101)
Q Consensus 4 ~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~------~~~~T~~~~~~~~P~w~e~~~~~~~~---- 72 (101)
-..|.-...+|.|.|..| .+.+ -+.+|.+||||.|++... ..++|++++.++||+|+|+|.|.+++
T Consensus 939 r~~y~~n~q~L~veVlhA~diip---LD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~ 1015 (1103)
T KOG1328|consen 939 RAYYNGNAQTLVVEVLHAKDIIP---LDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCS 1015 (1103)
T ss_pred EEEeeccccchhhhhhccccccc---cCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccc
Confidence 345666677788877777 4433 366789999999987532 25899999999999999999999972
Q ss_pred --CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 73 --YSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 73 --~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
.-.+-|+|.|+|-.+.+||-|++.+.|.
T Consensus 1016 te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg 1045 (1103)
T KOG1328|consen 1016 TETAMLHFTVMDHDYLRSNDFAGEAFLELG 1045 (1103)
T ss_pred cccceEEEEeeccceecccccchHHHHhhC
Confidence 2268899999998888999998776553
No 114
>PLN02270 phospholipase D alpha
Probab=99.06 E-value=1.7e-09 Score=76.23 Aligned_cols=89 Identities=22% Similarity=0.341 Sum_probs=71.6
Q ss_pred cceEEEEEEee-EeCCCC---------------CCCCCCCCCcEEEEEECCcCceeeeeecC-CCCCeeceEEEEEeC-C
Q psy16330 11 VLQLLQLVECA-HLRRGG---------------QGGGLLKPNPYIELYVDYKNPKTTRVVKN-TYQPKWNEEFTVLVS-P 72 (101)
Q Consensus 11 ~~~l~v~i~~a-~l~~~~---------------~~~~~~~~dpy~~v~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~-~ 72 (101)
.+.|.++|.+| +|+++. .....+.+|||+.|.+++....||+++.+ ..||.|+|.|.+++. .
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 46789999999 687520 00112457999999999988899999988 469999999999887 6
Q ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 73 YSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 73 ~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
...+.|+|-|.+.++.. +||.+.+|+.
T Consensus 87 ~~~v~f~vkd~~~~g~~-~ig~~~~p~~ 113 (808)
T PLN02270 87 ASNIIFTVKDDNPIGAT-LIGRAYIPVE 113 (808)
T ss_pred cceEEEEEecCCccCce-EEEEEEEEHH
Confidence 78999999998888654 9999999864
No 115
>KOG1031|consensus
Probab=98.89 E-value=8e-09 Score=70.85 Aligned_cols=86 Identities=23% Similarity=0.333 Sum_probs=70.9
Q ss_pred ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeece-EEEEEeC----CCCEEEEEEEeCCC
Q psy16330 12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNE-EFTVLVS----PYSIILFRLLDHRT 85 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e-~~~~~~~----~~~~l~~~v~~~~~ 85 (101)
+.|.|+|..+ +||-+ .......|.|+.+.+.+.. ++|.+..+++||.||. .|.|++. .+..|.+++.|+|.
T Consensus 3 gkl~vki~a~r~lpvm--dkasd~tdafveik~~n~t-~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVM--DKASDLTDAFVEIKFANTT-FKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCccc--ccccccchheeEEEecccc-eehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 5678889888 68775 2233457999999998885 9999999999999995 4577776 56799999999999
Q ss_pred CCCCCeeEEEEEECC
Q psy16330 86 FRRDCTIGEKRLNTS 100 (101)
Q Consensus 86 ~~~~~~iG~~~~~l~ 100 (101)
.+.++-||.+.+++.
T Consensus 80 ysandaigkv~i~id 94 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDID 94 (1169)
T ss_pred cccccccceeeeccC
Confidence 999999999998764
No 116
>KOG1326|consensus
Probab=98.74 E-value=7.3e-09 Score=73.85 Aligned_cols=84 Identities=21% Similarity=0.308 Sum_probs=69.4
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcC-ceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCC
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKN-PKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRD 89 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~-~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~ 89 (101)
++|.+.+| +|.+ .+..|.+|||+.+.+++.. .-+...+.++++|+|++-|.+... ....+.+.||++|..+.|
T Consensus 615 vrVyvv~A~~L~p---~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d 691 (1105)
T KOG1326|consen 615 VRVYVVEAFSLQP---SDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQD 691 (1105)
T ss_pred EEEEEEEeeeccc---cCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccccc
Confidence 34677888 7877 4677899999999988653 257778889999999998776654 577899999999999999
Q ss_pred CeeEEEEEECC
Q psy16330 90 CTIGEKRLNTS 100 (101)
Q Consensus 90 ~~iG~~~~~l~ 100 (101)
+.||+..++|+
T Consensus 692 ~~iget~iDLE 702 (1105)
T KOG1326|consen 692 EKIGETTIDLE 702 (1105)
T ss_pred chhhceehhhh
Confidence 99999998875
No 117
>KOG1013|consensus
Probab=98.58 E-value=1.8e-07 Score=60.13 Aligned_cols=90 Identities=26% Similarity=0.372 Sum_probs=69.6
Q ss_pred cccccccceEEEEEE-eeEeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeCC----CCE
Q psy16330 5 QDYFSSVLQLLQLVE-CAHLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP----YSI 75 (101)
Q Consensus 5 ~~y~~~~~~l~v~i~-~a~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~~----~~~ 75 (101)
-.|.+....+.+++. |+.|.. .+..+.+|||+...+.. ..+++|.+.+++.+|.|++.+.+.+.+ ...
T Consensus 226 l~~~s~~~~l~vt~iRc~~l~s---sDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~k 302 (362)
T KOG1013|consen 226 LAYSSTTPGLIVTIIRCSHLAS---SDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKK 302 (362)
T ss_pred eccCcCCCceEEEEEEeeeeec---cccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcce
Confidence 467777888888655 467766 36668899999998642 235889999999999999999888873 458
Q ss_pred EEEEEEeCCCCCCCCeeEEEEE
Q psy16330 76 ILFRLLDHRTFRRDCTIGEKRL 97 (101)
Q Consensus 76 l~~~v~~~~~~~~~~~iG~~~~ 97 (101)
+.+.+||.+..+..+++|-...
T Consensus 303 v~lsvgd~~~G~s~d~~GG~~~ 324 (362)
T KOG1013|consen 303 VALSVGDYDIGKSNDSIGGSML 324 (362)
T ss_pred EEEeecccCCCcCccCCCcccc
Confidence 8999999998767777776543
No 118
>KOG0905|consensus
Probab=98.49 E-value=1.8e-07 Score=68.21 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=66.3
Q ss_pred cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEEC----CcCceeeeeecCCCCCeeceEEEEE-eC----CCCEEEEEE
Q psy16330 11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVL-VS----PYSIILFRL 80 (101)
Q Consensus 11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~----~~~~~~T~~~~~~~~P~w~e~~~~~-~~----~~~~l~~~v 80 (101)
.+.|.|.|..+ +|+- ..+...+||||+.++. +..+.+|++++++.+|.|||.+... .+ ....|.++|
T Consensus 1523 ~~~LtImV~H~K~L~~---Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sV 1599 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLAL---LQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSV 1599 (1639)
T ss_pred CceEEEEhhhhccccc---ccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeee
Confidence 56677777776 3422 1222457999999874 2346899999999999999998766 33 346899999
Q ss_pred EeCCCCCCCCeeEEEEEECC
Q psy16330 81 LDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 81 ~~~~~~~~~~~iG~~~~~l~ 100 (101)
|..+....+.++|.+.++|.
T Consensus 1600 ls~~~~~en~~lg~v~i~L~ 1619 (1639)
T KOG0905|consen 1600 LSNGGLLENVFLGGVNIPLL 1619 (1639)
T ss_pred ecccceeeeeeeeeeecchh
Confidence 99998888889999998875
No 119
>PLN02964 phosphatidylserine decarboxylase
Probab=98.37 E-value=1e-06 Score=61.68 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=60.8
Q ss_pred ceEEEEEEeeEeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCCCCCC
Q psy16330 12 LQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRTFRRD 89 (101)
Q Consensus 12 ~~l~v~i~~a~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~~~~~ 89 (101)
+.+.+++..|.+ ...|+|..+-.-+.+.+||...+++.+|+||+...|.+. ...-..+.|||.+.++.+
T Consensus 54 ~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n 124 (644)
T PLN02964 54 GIALLTLVGAEM---------KFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKN 124 (644)
T ss_pred CeEEEEeehhhh---------ccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHH
Confidence 344555666532 224887777544555799999999999999998888876 334569999999999999
Q ss_pred CeeEEEEEECC
Q psy16330 90 CTIGEKRLNTS 100 (101)
Q Consensus 90 ~~iG~~~~~l~ 100 (101)
+++|.++++|+
T Consensus 125 ~lv~~~e~~~t 135 (644)
T PLN02964 125 TLVGYCELDLF 135 (644)
T ss_pred HhhhheeecHh
Confidence 99999988653
No 120
>KOG1013|consensus
Probab=98.35 E-value=4e-08 Score=63.01 Aligned_cols=95 Identities=20% Similarity=0.164 Sum_probs=74.7
Q ss_pred ceecccccccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC-----
Q psy16330 2 FLLQDYFSSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS----- 71 (101)
Q Consensus 2 ~~~~~y~~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~----- 71 (101)
++-..|.+.+..+..++..| .|+. ++..+..|||++..+.. ..+.+|++..+++||.|++......-
T Consensus 83 ~~~~~y~~~~~~~~~tl~~a~~lk~---~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~ 159 (362)
T KOG1013|consen 83 EFELLYDSESRMLDTTLDRAKGLKP---MDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDT 159 (362)
T ss_pred hhhhhhhhhhhhcceeechhcccch---hhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchh
Confidence 45667899999999999999 5776 46668899999997642 23478999999999999998766542
Q ss_pred CCCEEEEEEEeCCCCCCCCeeEEEEEEC
Q psy16330 72 PYSIILFRLLDHRTFRRDCTIGEKRLNT 99 (101)
Q Consensus 72 ~~~~l~~~v~~~~~~~~~~~iG~~~~~l 99 (101)
....+.+.+.+.+.+...+++|+..+++
T Consensus 160 ~~K~~Rk~vcdn~~~~~~~sqGq~r~~l 187 (362)
T KOG1013|consen 160 HLKVLRKVVCDNDKKTHNESQGQSRVSL 187 (362)
T ss_pred hhhhhheeeccCcccccccCcccchhhh
Confidence 2446777888888888889999988654
No 121
>PLN02352 phospholipase D epsilon
Probab=98.31 E-value=5.6e-06 Score=58.76 Aligned_cols=83 Identities=18% Similarity=0.204 Sum_probs=60.4
Q ss_pred ccceEEEEEEeeE-eCCCCCC-CCC-CCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC-CC-CEEEEEEEeCC
Q psy16330 10 SVLQLLQLVECAH-LRRGGQG-GGL-LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PY-SIILFRLLDHR 84 (101)
Q Consensus 10 ~~~~l~v~i~~a~-l~~~~~~-~~~-~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~-~~-~~l~~~v~~~~ 84 (101)
-.+.|.++|..|+ +...+.. ... ...+||+.|.+++....|| .+..||.|+|.|.+++. .. ..+.|+|-|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence 3577899999985 3322110 111 1239999999998877888 56669999999999887 33 689999977
Q ss_pred CCCCCCeeEEEEEECC
Q psy16330 85 TFRRDCTIGEKRLNTS 100 (101)
Q Consensus 85 ~~~~~~~iG~~~~~l~ 100 (101)
..++||.+.+|+.
T Consensus 83 ---~~~~ig~~~~p~~ 95 (758)
T PLN02352 83 ---KCSILGRFHIQAH 95 (758)
T ss_pred ---CCeEEEEEEEEHH
Confidence 2569999999864
No 122
>KOG2059|consensus
Probab=98.14 E-value=4.4e-06 Score=58.42 Aligned_cols=69 Identities=23% Similarity=0.257 Sum_probs=54.3
Q ss_pred CCCCCcEEEEEECCcC---ceeeeeecCCCCCeeceEEEEEeCCC-----------------CEEEEEEEe-CCCCCCCC
Q psy16330 32 LLKPNPYIELYVDYKN---PKTTRVVKNTYQPKWNEEFTVLVSPY-----------------SIILFRLLD-HRTFRRDC 90 (101)
Q Consensus 32 ~~~~dpy~~v~~~~~~---~~~T~~~~~~~~P~w~e~~~~~~~~~-----------------~~l~~~v~~-~~~~~~~~ 90 (101)
.+.+|||+.+...+.. ..+|++.+.+.+|.|+|.+.|.+... ..|++++|+ ++....+.
T Consensus 148 ~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~ 227 (800)
T KOG2059|consen 148 NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDV 227 (800)
T ss_pred CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhh
Confidence 4569999999875432 26899999999999999999987521 268889998 45555689
Q ss_pred eeEEEEEECC
Q psy16330 91 TIGEKRLNTS 100 (101)
Q Consensus 91 ~iG~~~~~l~ 100 (101)
|+|++.+++.
T Consensus 228 FlGevrv~v~ 237 (800)
T KOG2059|consen 228 FLGEVRVPVD 237 (800)
T ss_pred hceeEEeehh
Confidence 9999998864
No 123
>KOG1327|consensus
Probab=98.10 E-value=1.9e-05 Score=53.97 Aligned_cols=74 Identities=26% Similarity=0.311 Sum_probs=55.7
Q ss_pred EeCCCCCCCCCCCCCcEEEEEE--CCc---CceeeeeecCCCCCeeceEEEEEeC------CCCEEEEEEEeCCCCCCCC
Q psy16330 22 HLRRGGQGGGLLKPNPYIELYV--DYK---NPKTTRVVKNTYQPKWNEEFTVLVS------PYSIILFRLLDHRTFRRDC 90 (101)
Q Consensus 22 ~l~~~~~~~~~~~~dpy~~v~~--~~~---~~~~T~~~~~~~~P~w~e~~~~~~~------~~~~l~~~v~~~~~~~~~~ 90 (101)
+|.+ ++.++.+|||..++- +.. ..++|.+++++++|.|.+.. +... +...+.+.+|+++..++++
T Consensus 147 ~ld~---kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~-i~~~~l~~~~~~~~~~i~~~d~~~~~~~~ 222 (529)
T KOG1327|consen 147 NLDP---KDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFS-ISLQSLCSKDGNRPIQIECYDYDSNGKHD 222 (529)
T ss_pred ecCc---ccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccc-cchhhhcccCCCCceEEEEeccCCCCCcC
Confidence 5555 466788999999953 221 24899999999999998532 3321 3568899999999998989
Q ss_pred eeEEEEEEC
Q psy16330 91 TIGEKRLNT 99 (101)
Q Consensus 91 ~iG~~~~~l 99 (101)
+||.+..++
T Consensus 223 ~ig~~~tt~ 231 (529)
T KOG1327|consen 223 LIGKFQTTL 231 (529)
T ss_pred ceeEecccH
Confidence 999988654
No 124
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.85 E-value=0.00019 Score=40.88 Aligned_cols=67 Identities=16% Similarity=0.316 Sum_probs=51.2
Q ss_pred CCCcEEEEEEC---CcCceeeeeecCCCCCeeceEEEEEeC-----------------CCCEEEEEEEeCCCC-------
Q psy16330 34 KPNPYIELYVD---YKNPKTTRVVKNTYQPKWNEEFTVLVS-----------------PYSIILFRLLDHRTF------- 86 (101)
Q Consensus 34 ~~dpy~~v~~~---~~~~~~T~~~~~~~~P~w~e~~~~~~~-----------------~~~~l~~~v~~~~~~------- 86 (101)
..|+|+.+.+. +....+|+++.++.-|.|+..+.|.++ ....+.+++|....-
T Consensus 32 GVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~ 111 (143)
T cd08683 32 GVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK 111 (143)
T ss_pred ccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence 36899999753 344589999999999999999988774 123788999986532
Q ss_pred ---CCCCeeEEEEEECC
Q psy16330 87 ---RRDCTIGEKRLNTS 100 (101)
Q Consensus 87 ---~~~~~iG~~~~~l~ 100 (101)
..|-++|.+.+|+.
T Consensus 112 ~~~~~DilLG~v~IPl~ 128 (143)
T cd08683 112 IETSGDILLGTVKIPLR 128 (143)
T ss_pred cCcCCcEEEEEEEeeHH
Confidence 23558899999864
No 125
>KOG1011|consensus
Probab=97.76 E-value=0.0002 Score=50.54 Aligned_cols=87 Identities=22% Similarity=0.250 Sum_probs=63.5
Q ss_pred ccceEEEEEEeeE-eCCCCCCCCCCCCCcEEEEEEC------CcCceeeeeecCCCCCeeceEEEEEeC-----CCCEEE
Q psy16330 10 SVLQLLQLVECAH-LRRGGQGGGLLKPNPYIELYVD------YKNPKTTRVVKNTYQPKWNEEFTVLVS-----PYSIIL 77 (101)
Q Consensus 10 ~~~~l~v~i~~a~-l~~~~~~~~~~~~dpy~~v~~~------~~~~~~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~ 77 (101)
+...+.|.|..|+ |+= ...|.--||+.+.+- ..+++.|+...++-.|-+||+|.|-+. ....|.
T Consensus 1123 gehkvtvkvvaandlkw----qtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~ 1198 (1283)
T KOG1011|consen 1123 GEHKVTVKVVAANDLKW----QTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQ 1198 (1283)
T ss_pred CcceEEEEEEecccccc----hhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEE
Confidence 3456677888883 543 334556799999752 233577888888999999999999886 233788
Q ss_pred EEEEeCCCCCCCCeeEEEEEECC
Q psy16330 78 FRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 78 ~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
+.|-|+.=...|..+|.+.++|.
T Consensus 1199 ~~VKDYCFAReDRvvGl~VlqL~ 1221 (1283)
T KOG1011|consen 1199 FCVKDYCFAREDRVVGLAVLQLR 1221 (1283)
T ss_pred Eeehhheeecccceeeeeeeehh
Confidence 88888775556789999888764
No 126
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.61 E-value=5.1e-05 Score=40.39 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=45.3
Q ss_pred CCcCceeeeeecCCCCCeeceEEEEEeC----CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 44 DYKNPKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 44 ~~~~~~~T~~~~~~~~P~w~e~~~~~~~----~~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
...-..+|...+.+.+|.|.|+|.|.+. ++..|.|.++. ...+.+.||.+.+.+.
T Consensus 32 ~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe~iG~~sL~l~ 90 (103)
T cd08684 32 PKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKRTIGECSLSLR 90 (103)
T ss_pred CCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccceeeEEEeecc
Confidence 3443588989999999999999999886 56688899988 4567889999999875
No 127
>KOG1326|consensus
Probab=97.55 E-value=1.9e-05 Score=57.15 Aligned_cols=67 Identities=19% Similarity=0.192 Sum_probs=53.7
Q ss_pred CCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEe---C--------CCCEEEEEEEeCCCCCCCCeeEEEEE
Q psy16330 30 GGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV---S--------PYSIILFRLLDHRTFRRDCTIGEKRL 97 (101)
Q Consensus 30 ~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~---~--------~~~~l~~~v~~~~~~~~~~~iG~~~~ 97 (101)
+..+.+|||+.+..-++ .+.|.++.++++|.|++...|.- . ....+.+++||.+..+.++|+|....
T Consensus 222 dk~~~sdp~a~v~f~~q-s~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~ 299 (1105)
T KOG1326|consen 222 DKDDESDPDAAVEFCGQ-SKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQ 299 (1105)
T ss_pred CcccCCCchhhhhcccc-cceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhccccc
Confidence 33456899999987666 48999999999999999988852 1 12367899999999999999998654
No 128
>KOG1328|consensus
Probab=97.40 E-value=0.00012 Score=52.03 Aligned_cols=37 Identities=32% Similarity=0.583 Sum_probs=30.9
Q ss_pred eeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCC
Q psy16330 49 KTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRT 85 (101)
Q Consensus 49 ~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~ 85 (101)
+-|.+.++++||.|+|.|.|.+. ....+-+.|||+|.
T Consensus 179 katsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDD 217 (1103)
T KOG1328|consen 179 KATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDD 217 (1103)
T ss_pred hhcccccccCCcchhhheeeehhccccceeeeecccCCc
Confidence 45777888999999999999987 55678899999764
No 129
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=97.34 E-value=0.0023 Score=37.82 Aligned_cols=67 Identities=19% Similarity=0.248 Sum_probs=47.6
Q ss_pred CCCcEEEEEE--CCcC---ceeeeeecCCCCCeeceEEEEEeC-----CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 34 KPNPYIELYV--DYKN---PKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 34 ~~dpy~~v~~--~~~~---~~~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
..+.|+.+.+ ++.. ...|....-+..+.|||...|.+. .+..|.|+||+....+....+|.++++|-
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lF 105 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLF 105 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeE
Confidence 4677887754 3321 235555554667899999999875 35589999999876556679999999874
No 130
>KOG2060|consensus
Probab=97.27 E-value=0.00018 Score=47.37 Aligned_cols=87 Identities=18% Similarity=0.219 Sum_probs=60.3
Q ss_pred cccceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeC-CCCEEEEEEEe
Q psy16330 9 SSVLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVS-PYSIILFRLLD 82 (101)
Q Consensus 9 ~~~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~-~~~~l~~~v~~ 82 (101)
...+.+.|.|..| .|... ...-..++||++|++-. ..+.+|+..+++..|.+.+...|.-. +..-|.+++|.
T Consensus 266 d~~g~l~vEii~ar~l~~k--~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~g 343 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVK--PGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWG 343 (405)
T ss_pred cccCceeEEEEeccccccc--CCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEec
Confidence 3456788888888 44321 12223689999998632 23578999999999999888888776 56688899985
Q ss_pred -CCCCCCCCeeEEEEE
Q psy16330 83 -HRTFRRDCTIGEKRL 97 (101)
Q Consensus 83 -~~~~~~~~~iG~~~~ 97 (101)
...+-.+.|+|.+++
T Consensus 344 dygRmd~k~fmg~aqi 359 (405)
T KOG2060|consen 344 DYGRMDHKSFMGVAQI 359 (405)
T ss_pred cccccchHHHhhHHHH
Confidence 445555667766544
No 131
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=97.14 E-value=0.021 Score=34.69 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=39.7
Q ss_pred ceeeeeecCCCCCeeceEEEEEeC----CCCEEEEEEEeCCCCC-C-CCeeEEEEEEC
Q psy16330 48 PKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTFR-R-DCTIGEKRLNT 99 (101)
Q Consensus 48 ~~~T~~~~~~~~P~w~e~~~~~~~----~~~~l~~~v~~~~~~~-~-~~~iG~~~~~l 99 (101)
.++|-+...+.+|.|+|++.+.++ ...+|.|+++...... . ...+|-+.++|
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 478888998999999999999987 4568999888754321 1 25678887776
No 132
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.93 E-value=0.017 Score=33.84 Aligned_cols=85 Identities=12% Similarity=0.123 Sum_probs=51.8
Q ss_pred ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEE--CCcC---ceeeeeecCCCCCeeceEEEEEeC-----CCCEEEEEE
Q psy16330 12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYV--DYKN---PKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRL 80 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~--~~~~---~~~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~~~v 80 (101)
..+.|++... +... ......+.|+.+.+ ++.. ...|.....+.++.|+|...|.+. .+..|.|++
T Consensus 8 ~~~~i~i~~~~~~~~----~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl 83 (156)
T cd08380 8 FNLRIKIHGITNINL----LDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSI 83 (156)
T ss_pred CCeEEEEEeeccccc----cCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEE
Confidence 3456666665 2221 01123456666643 3321 233333333468999999999764 456899999
Q ss_pred EeCCCCC--CCCeeEEEEEECC
Q psy16330 81 LDHRTFR--RDCTIGEKRLNTS 100 (101)
Q Consensus 81 ~~~~~~~--~~~~iG~~~~~l~ 100 (101)
|+.+..+ .+..||.+.++|-
T Consensus 84 ~~~~~~~~~~~~~iG~~~~~lF 105 (156)
T cd08380 84 YAVSEPGSKKEVPLGWVNVPLF 105 (156)
T ss_pred EEEecCCCCcceEEEEEeEEeE
Confidence 9876543 4579999998874
No 133
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.91 E-value=0.02 Score=34.28 Aligned_cols=84 Identities=12% Similarity=0.084 Sum_probs=52.7
Q ss_pred ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEE--CCcC---ceeeeeecCCCCCeeceEEEEEeC-----CCCEEEEEE
Q psy16330 12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYV--DYKN---PKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRL 80 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~--~~~~---~~~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~~~v 80 (101)
..+.|++.++ ++.- .+ ...+.|+.+.+ ++.. ...|....-+..+.|+|.+.|++. ....|.|++
T Consensus 8 ~~f~i~i~~~~~~~~---~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti 82 (173)
T cd08693 8 EKFSITLHKISNLNA---AE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAI 82 (173)
T ss_pred CCEEEEEEEeccCcc---CC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEE
Confidence 4678888888 4432 01 22456666643 3321 234544444567999999999775 355899999
Q ss_pred EeCCCCC----------------CCCeeEEEEEECC
Q psy16330 81 LDHRTFR----------------RDCTIGEKRLNTS 100 (101)
Q Consensus 81 ~~~~~~~----------------~~~~iG~~~~~l~ 100 (101)
|+..... ....||.+.++|-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LF 118 (173)
T cd08693 83 YEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVF 118 (173)
T ss_pred EEecccccccccccccccccccCcceEEEEEeEEEE
Confidence 9864321 2468899888763
No 134
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.90 E-value=0.022 Score=33.66 Aligned_cols=82 Identities=15% Similarity=0.187 Sum_probs=51.7
Q ss_pred ceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEE--CCcC---ceeeeeecCCCCCeeceEEEEEeC-----CCCEEEEEE
Q psy16330 12 LQLLQLVECA-HLRRGGQGGGLLKPNPYIELYV--DYKN---PKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRL 80 (101)
Q Consensus 12 ~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~--~~~~---~~~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~~~v 80 (101)
..+.|+|.++ ++.- . ...+.|+.+.+ ++.. ...|..+. ..++.|+|.+.|.+. ....|.|++
T Consensus 8 ~~~~v~i~~~~~~~~----~--~~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti 80 (158)
T cd08398 8 SNLRIKILCATYVNV----N--DIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSI 80 (158)
T ss_pred CCeEEEEEeeccCCC----C--CcCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEE
Confidence 4678888888 4432 1 23467887754 3321 12333333 257999999999875 355899999
Q ss_pred EeCCCCC----CCCeeEEEEEECC
Q psy16330 81 LDHRTFR----RDCTIGEKRLNTS 100 (101)
Q Consensus 81 ~~~~~~~----~~~~iG~~~~~l~ 100 (101)
|+..... ....+|.+.++|-
T Consensus 81 ~~~~~~~~~k~~~~~iG~~ni~LF 104 (158)
T cd08398 81 CSVKGRKGAKEEHCPLAWGNINLF 104 (158)
T ss_pred EEEecccCCCCceEEEEEEEEEEE
Confidence 9865321 2246899988763
No 135
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=96.84 E-value=0.007 Score=32.50 Aligned_cols=51 Identities=12% Similarity=0.049 Sum_probs=37.7
Q ss_pred CCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEEeCC
Q psy16330 33 LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHR 84 (101)
Q Consensus 33 ~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~~~ 84 (101)
|..+..+.+.+++.....|.-. ...+..|++.|.+++.....|+|.||-.|
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdRsRELEI~VywrD 57 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELERSRELEIAVYWRD 57 (98)
T ss_pred cccceEEEEEEcCeEEeecccc-ccccccccceeEEEeecccEEEEEEEEec
Confidence 4456777777776544444333 23588999999999998899999998765
No 136
>KOG3837|consensus
Probab=96.82 E-value=0.0025 Score=42.88 Aligned_cols=66 Identities=21% Similarity=0.349 Sum_probs=51.3
Q ss_pred CCcEEEEEE----CCcCceeeeeecCCCCCeeceEEEEEeCC-------------CCEEEEEEEeCCCC-CCCCeeEEEE
Q psy16330 35 PNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP-------------YSIILFRLLDHRTF-RRDCTIGEKR 96 (101)
Q Consensus 35 ~dpy~~v~~----~~~~~~~T~~~~~~~~P~w~e~~~~~~~~-------------~~~l~~~v~~~~~~-~~~~~iG~~~ 96 (101)
.|-|+.+++ +..++.+|.+++.+.+|.|++.|.+.+.. ...++|++|....+ .+|.++|.+.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 356777753 23346899999999999999999988852 23789999998764 5788999998
Q ss_pred EECC
Q psy16330 97 LNTS 100 (101)
Q Consensus 97 ~~l~ 100 (101)
+.+.
T Consensus 468 ikle 471 (523)
T KOG3837|consen 468 IKLE 471 (523)
T ss_pred eeeh
Confidence 8764
No 137
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.74 E-value=0.037 Score=33.36 Aligned_cols=85 Identities=7% Similarity=-0.028 Sum_probs=49.4
Q ss_pred ceEEEEEEeeEeCCCCCCCCCCCCCcEEEEEE--CCcC--ceeeeeecCCCCCeeceEEEEEeC-----CCCEEEEEEEe
Q psy16330 12 LQLLQLVECAHLRRGGQGGGLLKPNPYIELYV--DYKN--PKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLD 82 (101)
Q Consensus 12 ~~l~v~i~~a~l~~~~~~~~~~~~dpy~~v~~--~~~~--~~~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~~~v~~ 82 (101)
..+.|+|.+++.+. .........|+.+.+ ++.. ..+|.....+.++.|+|.+.|.+. ....|.|+||+
T Consensus 10 ~~friki~~~~~~~---~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 10 RKFRVKILGIDIPV---LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CCEEEEEEeecccC---cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEE
Confidence 35677777774322 111112234555532 3321 235555555678999999988875 35589999998
Q ss_pred CCCCC----------------CCCeeEEEEEEC
Q psy16330 83 HRTFR----------------RDCTIGEKRLNT 99 (101)
Q Consensus 83 ~~~~~----------------~~~~iG~~~~~l 99 (101)
....+ .+..||.+.+.|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~L 119 (178)
T cd08399 87 GKAPALSSKKSAESPSSESKGKHQLLYYVNLLL 119 (178)
T ss_pred EecCcccccccccccccccccccceEEEEEEEE
Confidence 52111 245777777765
No 138
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=96.74 E-value=0.013 Score=35.34 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=32.9
Q ss_pred ceeeeeecCCCCCeeceEEEEEeC----CCCEEEEEEEeCCCCC-CC--CeeEEEEEECC
Q psy16330 48 PKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTFR-RD--CTIGEKRLNTS 100 (101)
Q Consensus 48 ~~~T~~~~~~~~P~w~e~~~~~~~----~~~~l~~~v~~~~~~~-~~--~~iG~~~~~l~ 100 (101)
.+.|.+..++.+|.|+|++.+.++ +...|.|++++...-. ++ ..+|.+.++|-
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~ 119 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLM 119 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEee
Confidence 367777778899999999999987 3558999999865422 22 68999999874
No 139
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.68 E-value=0.062 Score=32.88 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=39.5
Q ss_pred ceeeeeecCCCCCeeceEEEEEeC----CCCEEEEEEEeCCCC-CC---CCeeEEEEEEC
Q psy16330 48 PKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTF-RR---DCTIGEKRLNT 99 (101)
Q Consensus 48 ~~~T~~~~~~~~P~w~e~~~~~~~----~~~~l~~~v~~~~~~-~~---~~~iG~~~~~l 99 (101)
.++|-+.....+|.|+|++.+.++ ...+|.|+++..... .+ ...+|-+.++|
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 478888888999999999999987 456899999875422 12 24678877776
No 140
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=96.54 E-value=0.013 Score=33.83 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=38.0
Q ss_pred eeeeecCC-CCCeeceEEEEEeC-----CCCEEEEEEEeCCCCCCC----CeeEEEEEECC
Q psy16330 50 TTRVVKNT-YQPKWNEEFTVLVS-----PYSIILFRLLDHRTFRRD----CTIGEKRLNTS 100 (101)
Q Consensus 50 ~T~~~~~~-~~P~w~e~~~~~~~-----~~~~l~~~v~~~~~~~~~----~~iG~~~~~l~ 100 (101)
.|....-+ ..+.|+|.+.|.+. .+..|.|++|........ ..||.+.++|-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lF 83 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLF 83 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeE
Confidence 55555555 79999999999875 466999999987655444 68999999874
No 141
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.53 E-value=0.025 Score=33.77 Aligned_cols=87 Identities=16% Similarity=0.050 Sum_probs=53.5
Q ss_pred cceEEEEEEee-EeCCCCCCCCCCCCCcEEEEEE--CCcC---ceeeeeec----CCCCCeeceEEEEEeC-----CCCE
Q psy16330 11 VLQLLQLVECA-HLRRGGQGGGLLKPNPYIELYV--DYKN---PKTTRVVK----NTYQPKWNEEFTVLVS-----PYSI 75 (101)
Q Consensus 11 ~~~l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~--~~~~---~~~T~~~~----~~~~P~w~e~~~~~~~-----~~~~ 75 (101)
...+.++|.++ +++.. -.....+.|+.+.+ ++.. ...|+... -...+.|+|.+.|.+. .+..
T Consensus 7 ~~~~~i~v~~~h~~~~~---~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrear 83 (171)
T cd04012 7 TDLLSVTVSSLHRIPPT---WVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESR 83 (171)
T ss_pred cccEEEEEEEeecCChH---HhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHE
Confidence 34577888888 45541 11123567777753 3321 12333221 1335779999988775 3568
Q ss_pred EEEEEEeCCCCC---------CCCeeEEEEEECC
Q psy16330 76 ILFRLLDHRTFR---------RDCTIGEKRLNTS 100 (101)
Q Consensus 76 l~~~v~~~~~~~---------~~~~iG~~~~~l~ 100 (101)
|.|++|+....+ .+..+|.+.++|-
T Consensus 84 L~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LF 117 (171)
T cd04012 84 LVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLF 117 (171)
T ss_pred EEEEEEEEecCCccccccccccceEEEEEeEeeE
Confidence 999999865443 3468999988863
No 142
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.87 E-value=0.17 Score=33.62 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=58.8
Q ss_pred EEEEEEee-EeCCCCCCCCCCCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC---------CCCEEEEEEEeC
Q psy16330 14 LLQLVECA-HLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS---------PYSIILFRLLDH 83 (101)
Q Consensus 14 l~v~i~~a-~l~~~~~~~~~~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~---------~~~~l~~~v~~~ 83 (101)
+.|.|.++ +.+.. ....-.+...+++.. ..|..+.++..|.|+..+.+++. ....|++++|..
T Consensus 2 ivl~i~egr~F~~~------~~~~~vv~a~~ng~~-l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~ 74 (340)
T PF12416_consen 2 IVLSILEGRNFPQR------PRHPIVVEAKFNGES-LETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAV 74 (340)
T ss_pred EEEEEecccCCCCC------CCccEEEEEEeCCce-eeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEe
Confidence 34566666 33321 122345556788884 88999999999999999988875 456999999998
Q ss_pred C-CCCCCCeeEEEEEECC
Q psy16330 84 R-TFRRDCTIGEKRLNTS 100 (101)
Q Consensus 84 ~-~~~~~~~iG~~~~~l~ 100 (101)
+ ..+..+.+|.+-++|.
T Consensus 75 ~~~~~~re~iGyv~LdLR 92 (340)
T PF12416_consen 75 DGSTGKRESIGYVVLDLR 92 (340)
T ss_pred cCCCCcceeccEEEEEcc
Confidence 8 5566789999988874
No 143
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=95.77 E-value=0.089 Score=31.59 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=37.0
Q ss_pred eeeecCCCCCeeceEEEEEeC----CCCEEEEEEEeCCCC-----CCCCeeEEEEEECC
Q psy16330 51 TRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTF-----RRDCTIGEKRLNTS 100 (101)
Q Consensus 51 T~~~~~~~~P~w~e~~~~~~~----~~~~l~~~v~~~~~~-----~~~~~iG~~~~~l~ 100 (101)
+.++....+|.|++++.+.++ +..+|.|++++...- .....+|-+.++|-
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 334444489999999999987 456999999986522 33568899988874
No 144
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=95.76 E-value=0.14 Score=30.53 Aligned_cols=66 Identities=21% Similarity=0.274 Sum_probs=49.0
Q ss_pred CCCcEEEEEECCcCceeeeeecC--CCCCeeceEEEEEeC-CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 34 KPNPYIELYVDYKNPKTTRVVKN--TYQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 34 ~~dpy~~v~~~~~~~~~T~~~~~--~~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
...-|+++.++++...+|+...- ...-.|++.|.+.+. -...|.++||.... ..+.+|+++.+++-
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP 104 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVP 104 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCC
Confidence 35678999888876666666554 444567788777776 45689999999876 57789999998863
No 145
>KOG1265|consensus
Probab=95.66 E-value=0.049 Score=40.22 Aligned_cols=78 Identities=22% Similarity=0.299 Sum_probs=51.4
Q ss_pred ceEEEEEEeeE-eCCCCCCCCCCCCCcEEEEEECC------cCceeeeeec-CCCCCeeceE-EEEEe---CCCCEEEEE
Q psy16330 12 LQLLQLVECAH-LRRGGQGGGLLKPNPYIELYVDY------KNPKTTRVVK-NTYQPKWNEE-FTVLV---SPYSIILFR 79 (101)
Q Consensus 12 ~~l~v~i~~a~-l~~~~~~~~~~~~dpy~~v~~~~------~~~~~T~~~~-~~~~P~w~e~-~~~~~---~~~~~l~~~ 79 (101)
+.+.|+|..+. |.. .....||.|..-+ .+.+||++.. ++.||.|+|. |.|.- +.-..|.|.
T Consensus 703 ~t~sV~VISgqFLSd-------rkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRia 775 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSD-------RKVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIA 775 (1189)
T ss_pred eeEEEEEEeeeeccc-------cccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeee
Confidence 45677777774 433 2344799997532 1247888877 5999999964 44432 123478999
Q ss_pred EEeCCCCCCCCeeEEEEEECC
Q psy16330 80 LLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 80 v~~~~~~~~~~~iG~~~~~l~ 100 (101)
+|+.. ..+||+-.+++.
T Consensus 776 vyeEg----gK~ig~RIlpvd 792 (1189)
T KOG1265|consen 776 VYEEG----GKFIGQRILPVD 792 (1189)
T ss_pred eeccC----Cceeeeeccchh
Confidence 99865 458898777764
No 146
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.62 E-value=0.19 Score=29.75 Aligned_cols=89 Identities=15% Similarity=0.023 Sum_probs=55.1
Q ss_pred ccccceEEEEEEeeEe-CCCCCCCCCCCCCcEEEEEE--CCcCceeeeeecCCCCCeeceEEEEEeCC------------
Q psy16330 8 FSSVLQLLQLVECAHL-RRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSP------------ 72 (101)
Q Consensus 8 ~~~~~~l~v~i~~a~l-~~~~~~~~~~~~dpy~~v~~--~~~~~~~T~~~~~~~~P~w~e~~~~~~~~------------ 72 (101)
.+....|++++..++. -..+ ....+..+.-..+.+ .++ .++|+.+..+.+|.|++.|.|++..
T Consensus 5 ~~~~~yL~l~vlgGkAFld~l-~~~~~~~~s~~~l~l~f~~Q-RF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~l 82 (156)
T PF15627_consen 5 DPGRRYLHLRVLGGKAFLDHL-QEPEGQVCSTFTLHLHFRGQ-RFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTL 82 (156)
T ss_pred CCCceEEEEEEeCchhHhhhh-hccCCCCceEEEEEEEecCc-eEecCCcccccCCCCCCcEEEEecccccccccchhHh
Confidence 4556678888877631 1100 000134455555544 455 5999999999999999999999861
Q ss_pred ---CCEEEEEEEeCCCCCCCCeeEEEEEE
Q psy16330 73 ---YSIILFRLLDHRTFRRDCTIGEKRLN 98 (101)
Q Consensus 73 ---~~~l~~~v~~~~~~~~~~~iG~~~~~ 98 (101)
...+.+.+...+..+...++|+..+.
T Consensus 83 ls~~~pihivli~~d~~~~~~Lv~s~~ld 111 (156)
T PF15627_consen 83 LSISDPIHIVLIRTDPSGETTLVGSHFLD 111 (156)
T ss_pred hcCCCceEEEEEEecCCCceEeeeeceeh
Confidence 12455666655555555677765553
No 147
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=95.57 E-value=0.11 Score=31.43 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=39.6
Q ss_pred ceeeeeecCCCCCeeceEEEEEeC----CCCEEEEEEEeCCCCC------CCCeeEEEEEEC
Q psy16330 48 PKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTFR------RDCTIGEKRLNT 99 (101)
Q Consensus 48 ~~~T~~~~~~~~P~w~e~~~~~~~----~~~~l~~~v~~~~~~~------~~~~iG~~~~~l 99 (101)
.+.|.+..++.+|.|.+++.+.++ ...+|.|++++.+.-. ....+|-+.++|
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL 116 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPL 116 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEee
Confidence 478888889999999999999887 4568999998743211 135688888876
No 148
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=95.45 E-value=0.15 Score=30.99 Aligned_cols=52 Identities=13% Similarity=0.252 Sum_probs=39.9
Q ss_pred ceeeeeecCCCCCeeceEEEEEeC----CCCEEEEEEEeCCCC--C-------CCCeeEEEEEEC
Q psy16330 48 PKTTRVVKNTYQPKWNEEFTVLVS----PYSIILFRLLDHRTF--R-------RDCTIGEKRLNT 99 (101)
Q Consensus 48 ~~~T~~~~~~~~P~w~e~~~~~~~----~~~~l~~~v~~~~~~--~-------~~~~iG~~~~~l 99 (101)
...|.+..++.+|.|.+++.+.++ +..+|.|++++.+.. . ....+|-+.++|
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPL 121 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPL 121 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEee
Confidence 478888888999999999999887 456999999986421 1 135688888876
No 149
>KOG1452|consensus
Probab=95.18 E-value=0.14 Score=33.77 Aligned_cols=79 Identities=23% Similarity=0.164 Sum_probs=52.9
Q ss_pred ccceEEEEEEee-EeCCCCCCCCC-CCCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEEeCCCCC
Q psy16330 10 SVLQLLQLVECA-HLRRGGQGGGL-LKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFR 87 (101)
Q Consensus 10 ~~~~l~v~i~~a-~l~~~~~~~~~-~~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~~~~~~ 87 (101)
..+-|.+.+.++ .|+.- .... -..+.||.++.+.+-+.||.+-.....-.|.|+|..++.....+.+-+|+|+.-.
T Consensus 49 ~tGiL~~H~~~GRGLr~~--p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~~vl~~lvySW~pq~ 126 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMT--PQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNIEVLHYLVYSWPPQR 126 (442)
T ss_pred ccceEEEEEecccccccC--hhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccceeeeEEEeecCchh
Confidence 345566666665 34321 1111 2357899998887756777777777777899988887776778888888887655
Q ss_pred CCC
Q psy16330 88 RDC 90 (101)
Q Consensus 88 ~~~ 90 (101)
++.
T Consensus 127 RHK 129 (442)
T KOG1452|consen 127 RHK 129 (442)
T ss_pred hcc
Confidence 443
No 150
>KOG1327|consensus
Probab=93.67 E-value=0.12 Score=36.14 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=41.6
Q ss_pred eeeeeecCCCCCeeceEEEEEeC--CCCEEEEEEEeCCC----CCCCCeeEEEEEECC
Q psy16330 49 KTTRVVKNTYQPKWNEEFTVLVS--PYSIILFRLLDHRT----FRRDCTIGEKRLNTS 100 (101)
Q Consensus 49 ~~T~~~~~~~~P~w~e~~~~~~~--~~~~l~~~v~~~~~----~~~~~~iG~~~~~l~ 100 (101)
.+|.++.+.++|.|.+.+.+... ..+.+++.+++.+. ....+|+|+++..+.
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~ 100 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLS 100 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehh
Confidence 59999999999999998877665 45689999998664 345689999887654
No 151
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=91.14 E-value=1 Score=24.38 Aligned_cols=50 Identities=20% Similarity=0.267 Sum_probs=33.1
Q ss_pred CCcEEEEEE--CCcC---ceeeeeecCCCCCeeceEEEEEeC-----CCCEEEEEEEeCC
Q psy16330 35 PNPYIELYV--DYKN---PKTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLDHR 84 (101)
Q Consensus 35 ~dpy~~v~~--~~~~---~~~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~~~v~~~~ 84 (101)
.+.|+.+.+ ++.. ...|....-+..+.|+|...|.+. .+..|.|++|+..
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 367787754 3321 234544444566899999988775 3558999999854
No 152
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=90.86 E-value=1.9 Score=24.58 Aligned_cols=83 Identities=16% Similarity=0.217 Sum_probs=47.8
Q ss_pred cceEEEEEEeeE-eCCCCCCCCCCCCCcEEEEEECCcC--ceeeeeec-CCCCCeeceEEEEEeC----------CCCEE
Q psy16330 11 VLQLLQLVECAH-LRRGGQGGGLLKPNPYIELYVDYKN--PKTTRVVK-NTYQPKWNEEFTVLVS----------PYSII 76 (101)
Q Consensus 11 ~~~l~v~i~~a~-l~~~~~~~~~~~~dpy~~v~~~~~~--~~~T~~~~-~~~~P~w~e~~~~~~~----------~~~~l 76 (101)
..++.+.|.... ++. .....++...-+... ...|.... .+..-.|++.+.+.+. ....+
T Consensus 6 kf~~~l~i~~l~~~p~-------~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~ 78 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS-------SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKEL 78 (143)
T ss_pred eEEEEEEEEEeECcCC-------CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEE
Confidence 345566676663 322 122344444444332 23444443 3556799998887653 12378
Q ss_pred EEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 77 LFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 77 ~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
.|.|+.....+....+|.+.++|+
T Consensus 79 ~~~v~~~~~~~~k~~lG~~~inLa 102 (143)
T PF10358_consen 79 KFSVFEVDGSGKKKVLGKVSINLA 102 (143)
T ss_pred EEEEEEecCCCccceEEEEEEEHH
Confidence 888887643333368999999875
No 153
>KOG0694|consensus
Probab=87.67 E-value=0.21 Score=35.98 Aligned_cols=53 Identities=17% Similarity=0.118 Sum_probs=39.5
Q ss_pred CCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEEeCCCC
Q psy16330 34 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTF 86 (101)
Q Consensus 34 ~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~~~~~ 86 (101)
..+||+.+.+.-.....+.+.+.+..|.|+++|...+.....+.+.++.....
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~~~~~i~v~~~~~~ 79 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAGGAKNIIVLLKSPD 79 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeecCCceEEEEEecCCc
Confidence 46889888775433334445667899999999999987788888888876543
No 154
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=83.93 E-value=4.4 Score=22.42 Aligned_cols=50 Identities=16% Similarity=0.107 Sum_probs=26.1
Q ss_pred eeeeeecCCCCCeeceEEEEEeC---------CCCEEEEEEEeCCCCCCCCeeEEEEEECC
Q psy16330 49 KTTRVVKNTYQPKWNEEFTVLVS---------PYSIILFRLLDHRTFRRDCTIGEKRLNTS 100 (101)
Q Consensus 49 ~~T~~~~~~~~P~w~e~~~~~~~---------~~~~l~~~v~~~~~~~~~~~iG~~~~~l~ 100 (101)
..|.++. +.+|.++-+..+.+. ....+.++++..- ......+|.+++++.
T Consensus 13 q~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~ 71 (107)
T PF11618_consen 13 QTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLR 71 (107)
T ss_dssp EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--S
T ss_pred eccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeech
Confidence 5566665 789999988777775 2458889998754 223568899988864
No 155
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=79.92 E-value=10 Score=22.56 Aligned_cols=42 Identities=14% Similarity=0.269 Sum_probs=31.4
Q ss_pred CCCeeceEEEEEeC---C--CCEEEEEEEeCCCCCCCCeeEEEEEEC
Q psy16330 58 YQPKWNEEFTVLVS---P--YSIILFRLLDHRTFRRDCTIGEKRLNT 99 (101)
Q Consensus 58 ~~P~w~e~~~~~~~---~--~~~l~~~v~~~~~~~~~~~iG~~~~~l 99 (101)
..-.|+..+.+.+. + -..|.++||..|..+++.+.|-..+.|
T Consensus 55 ~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 55 DVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred CceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEEeEEeEEEe
Confidence 34578888777664 1 248999999999999988887665544
No 156
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=75.67 E-value=6.5 Score=20.32 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=19.6
Q ss_pred CCCEEEEEEEeCCCCCCCCeeEEEEE
Q psy16330 72 PYSIILFRLLDHRTFRRDCTIGEKRL 97 (101)
Q Consensus 72 ~~~~l~~~v~~~~~~~~~~~iG~~~~ 97 (101)
+....+|++|+.+.+..|++++....
T Consensus 10 P~~~~~V~L~e~d~~~~Ddll~~~~T 35 (80)
T PF01060_consen 10 PAKNVKVKLWEDDYFDPDDLLDETKT 35 (80)
T ss_pred cCCCCEEEEEECCCCCCCceeEEEEE
Confidence 44566799999987778888877654
No 157
>KOG0906|consensus
Probab=73.88 E-value=4.2 Score=29.79 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=35.2
Q ss_pred eeeeecCCCCCeeceEEEEEeC-----CCCEEEEEEEeCCCCCCCCeeEEEEEEC
Q psy16330 50 TTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLDHRTFRRDCTIGEKRLNT 99 (101)
Q Consensus 50 ~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~~~v~~~~~~~~~~~iG~~~~~l 99 (101)
+|....-+..-.|||-+++.+. ....+.+++|+...-+.-.++|..++.+
T Consensus 67 ~ts~~~~~~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~l 121 (843)
T KOG0906|consen 67 RTSYKAFSKRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSL 121 (843)
T ss_pred cccccccCCccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEe
Confidence 4443333333469998888765 4568999999977666677999888765
No 158
>KOG1329|consensus
Probab=64.15 E-value=7 Score=29.51 Aligned_cols=64 Identities=14% Similarity=0.278 Sum_probs=44.3
Q ss_pred CCcEEEEEECCcCceeeeeecCC-CCCeeceEEEEEeC-CCCEEEEEEEeCCCCCCCCeeEEEEEE
Q psy16330 35 PNPYIELYVDYKNPKTTRVVKNT-YQPKWNEEFTVLVS-PYSIILFRLLDHRTFRRDCTIGEKRLN 98 (101)
Q Consensus 35 ~dpy~~v~~~~~~~~~T~~~~~~-~~P~w~e~~~~~~~-~~~~l~~~v~~~~~~~~~~~iG~~~~~ 98 (101)
.++|+.+.+......+|....+. .+|.|.+.+..... ....+.+.+-+.+..+....+|.+..+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s 203 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKIS 203 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccc
Confidence 37888887776655777777776 78999988766554 456777777666555535566766654
No 159
>KOG4269|consensus
Probab=63.47 E-value=4.3 Score=30.74 Aligned_cols=48 Identities=29% Similarity=0.322 Sum_probs=32.9
Q ss_pred CCcEEEEEECC----cCceeeeeecCCCCCeeceEEEEEeCCCCEEEEEEEe
Q psy16330 35 PNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLD 82 (101)
Q Consensus 35 ~dpy~~v~~~~----~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~l~~~v~~ 82 (101)
.+.||...++. ..+.+|.++.++..|.|+++++..+-+.+...+..++
T Consensus 775 ~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~sqS~r~~~~e 826 (1112)
T KOG4269|consen 775 RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIESQSSRLEKTE 826 (1112)
T ss_pred cceeeehhhhhhccccccccceeeecccCCCCChhcccchhhccccchhhhc
Confidence 45677775431 2357899999999999999988877544444444443
No 160
>KOG4028|consensus
Probab=45.44 E-value=33 Score=19.94 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=17.7
Q ss_pred CEEEEEEEeCCCCCCCCeeEEE
Q psy16330 74 SIILFRLLDHRTFRRDCTIGEK 95 (101)
Q Consensus 74 ~~l~~~v~~~~~~~~~~~iG~~ 95 (101)
..|-+++|..|++++.++-|-.
T Consensus 74 prl~~qiw~~dnfgr~eiagyg 95 (175)
T KOG4028|consen 74 PRLHFQIWHHDNFGRCEIAGYG 95 (175)
T ss_pred ceeeeeeeecCcccceeecccc
Confidence 3789999999999887766543
No 161
>KOG4027|consensus
Probab=42.22 E-value=78 Score=19.15 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=21.5
Q ss_pred EEEEEEEeCCCCCCCCeeEEEEEEC
Q psy16330 75 IILFRLLDHRTFRRDCTIGEKRLNT 99 (101)
Q Consensus 75 ~l~~~v~~~~~~~~~~~iG~~~~~l 99 (101)
.|.+.+|..|-+++|...|-+.+.+
T Consensus 84 qivl~vfg~d~~G~d~v~GYg~~hi 108 (187)
T KOG4027|consen 84 QIVLNVFGKDHSGKDCVTGYGMLHI 108 (187)
T ss_pred eEEEEEecCCcCCcceeeeeeeEec
Confidence 8899999999999999888776654
No 162
>PF15084 DUF4550: Domain of unknown function (DUF4550)
Probab=36.67 E-value=58 Score=17.88 Aligned_cols=26 Identities=19% Similarity=0.506 Sum_probs=19.3
Q ss_pred CCeeceEEEEEeC-------CCCEEEEEEEeCC
Q psy16330 59 QPKWNEEFTVLVS-------PYSIILFRLLDHR 84 (101)
Q Consensus 59 ~P~w~e~~~~~~~-------~~~~l~~~v~~~~ 84 (101)
=..|.+++.+.+. -...|++.+||..
T Consensus 51 Wv~W~~~~~i~vt~e~l~kl~~h~i~~kiwDtk 83 (99)
T PF15084_consen 51 WVSWTHTFNINVTKELLKKLYFHKITLKIWDTK 83 (99)
T ss_pred EEEEEEEEEeccCHHHHHHHHcCeEEEEEEcch
Confidence 3688888877765 2458999999853
No 163
>KOG0904|consensus
Probab=28.88 E-value=1.9e+02 Score=22.71 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=23.0
Q ss_pred eeeeeecCCCCCeeceEEEEEeC-----CCCEEEEEEEe
Q psy16330 49 KTTRVVKNTYQPKWNEEFTVLVS-----PYSIILFRLLD 82 (101)
Q Consensus 49 ~~T~~~~~~~~P~w~e~~~~~~~-----~~~~l~~~v~~ 82 (101)
..|..+..+..|.||+.+.|++. +...|-+.||.
T Consensus 382 ~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 382 RSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred cccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 34444545778999999999875 22356666665
No 164
>COG5075 Uncharacterized conserved protein [Function unknown]
Probab=27.53 E-value=66 Score=20.90 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=19.2
Q ss_pred CceecccccccceEEEEEEeeE
Q psy16330 1 MFLLQDYFSSVLQLLQLVECAH 22 (101)
Q Consensus 1 ~~~~~~y~~~~~~l~v~i~~a~ 22 (101)
+++...|.+..++++|.|...+
T Consensus 231 l~mfvHY~PsYyhlHvHI~nIk 252 (305)
T COG5075 231 LRMFVHYQPSYYHLHVHIVNIK 252 (305)
T ss_pred eEEEEEeccceEEEEEEEEeec
Confidence 4788999999999999988874
No 165
>KOG2419|consensus
Probab=27.46 E-value=25 Score=26.11 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=24.7
Q ss_pred CCcEEEEEECCcCceeeeeecCCCCCeeceE
Q psy16330 35 PNPYIELYVDYKNPKTTRVVKNTYQPKWNEE 65 (101)
Q Consensus 35 ~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~ 65 (101)
.++++...++.+ .+||+....+..|+|||.
T Consensus 305 ~~~~~itsf~~~-~frt~~~~~~e~piyNe~ 334 (975)
T KOG2419|consen 305 DKWLAITSFGEQ-TFRTEISDDTEKPIYNED 334 (975)
T ss_pred CCchheeecchh-hhhhhhhccccccccccc
Confidence 567777777666 499999999999999986
No 166
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=22.47 E-value=1.8e+02 Score=17.12 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=41.5
Q ss_pred CCCcEEEEEECCcCceeeeeecCCCCCeeceEEEEEeC--------------CCCEEEEEEEeCCCCCCCCeeEEEEE
Q psy16330 34 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS--------------PYSIILFRLLDHRTFRRDCTIGEKRL 97 (101)
Q Consensus 34 ~~dpy~~v~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~--------------~~~~l~~~v~~~~~~~~~~~iG~~~~ 97 (101)
..|.|..+++-|.. ++|+....-.--.+++.+.|.-. ....+.++++...... ++.++..+-
T Consensus 19 ~~~vyL~v~~lg~~-~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA~ye~ 94 (140)
T PF14909_consen 19 KGDVYLSVCILGQY-KRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILAYYEE 94 (140)
T ss_pred CCCEEEEEEEcccE-eecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEEEEec
Confidence 45789999887774 78887766666677888888642 2347788888755432 445555443
Done!