RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16330
(101 letters)
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 78.8 bits (194), Expect = 3e-20
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 18 VECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIIL 77
V A L+ + P+PY+E+ VD K T NT PKW + TV+V+P S +
Sbjct: 42 VISAKLKENKKNWF--GPSPYVEVTVD-GQSKKTEKCNNTNSPKWKQPLTVIVTPVSKLH 98
Query: 78 FRLLDHRTFRRDCTIGEKRLN 98
FR+ H+T + D +G L+
Sbjct: 99 FRVWSHQTLKSDVLLGTAALD 119
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 63.1 bits (153), Expect = 3e-14
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 8/101 (7%)
Query: 8 FSSVLQLLQLVECAHL-------RRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQP 60
F+ L++ ++ E L R G +PY+ + VD T + T +P
Sbjct: 27 FNGYLRV-RIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKP 85
Query: 61 KWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNTST 101
+NEEF V+ + + D + L
Sbjct: 86 TYNEEFCANVTDGGHLELAVFHETPLGYDHFVANCTLQFQE 126
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 62.2 bits (151), Expect = 4e-14
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 9/102 (8%)
Query: 8 FSSVLQLLQLVECAHLR--------RGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQ 59
F+ +L++ ++ E L+ G +PYI L VD T + T
Sbjct: 4 FNGLLKI-KICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNS 62
Query: 60 PKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLNTST 101
P W++EF V I + D + +
Sbjct: 63 PAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEE 104
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding,
membrane associate, lipid binding PROT; 1.96A {Homo
sapiens} PDB: 2jqz_A
Length = 132
Score = 60.5 bits (147), Expect = 2e-13
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 34 KPNPYIELYVDY-KNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRRD 89
P+P+ ++ VD +T VKNT PKWN+ + + V I + +H+ +
Sbjct: 25 LPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTDSITISVWNHKKIHKK 81
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 60.2 bits (146), Expect = 2e-12
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS 74
+++ L G +PY+++Y+ D K T+V + T P +NE F V
Sbjct: 26 ILQALDLPAKDSNG---FSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAE 82
Query: 75 I----ILFRLLDHRTFRRDCTIGEKRL 97
+ + F + D F R IG+ L
Sbjct: 83 LAQRKLHFSVYDFDRFSRHDLIGQVVL 109
Score = 47.9 bits (114), Expect = 5e-08
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 18 VECAHLRRGGQGGGLLKPNPYIELYVDYKNP----KTTRVVKNTYQPKWNEEFTVLVSPY 73
++ ++L+ G +PY++ + + + T + KNT P +NE V+P
Sbjct: 159 IKASNLKAMDLTG---FSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPE 215
Query: 74 SI----ILFRLLDHRTFRRDCTIGEKRLNTST 101
S+ + ++D+ + IG R+
Sbjct: 216 SVENVGLSIAVVDYDCIGHNEVIGVCRVGPEA 247
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 57.5 bits (139), Expect = 1e-11
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS 74
+++ A L GG +PY+++++ D K T+V + T P +NE+FT V
Sbjct: 25 IIQAAELPALDMGG---TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 81
Query: 75 I----ILFRLLDHRTFRRDCTIGEKRL 97
+ ++ + D F + IGE ++
Sbjct: 82 LAGKTLVMAVYDFDRFSKHDIIGEFKV 108
Score = 46.0 bits (109), Expect = 2e-07
Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKT----TRVVKNTYQPKWNEEFTVLVSP 72
++E +L++ GG +PY+++++ + T + KNT P +NE F+ V
Sbjct: 156 ILEAKNLKKMDVGG---LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPF 212
Query: 73 YSI----ILFRLLDHRTFRRDCTIGEKRL 97
I ++ +LD+ ++ IG+ +
Sbjct: 213 EQIQKVQVVVTVLDYDKIGKNDAIGKVFV 241
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 52.7 bits (127), Expect = 2e-10
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS 74
+ E L + +PYI++ + + K+ TRV++ T P ++E FT PY+
Sbjct: 28 IKEARGLPAMDEQSM--TSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYT 85
Query: 75 II-----LFRLLDHRTFRRDCTIGEKRL 97
I F +L F RD IGE +
Sbjct: 86 QIQELALHFTILSFDRFSRDDIIGEVLI 113
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 52.4 bits (126), Expect = 3e-10
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 34 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV-SPYSIILFRLLDHRTFRRDCTI 92
+PY++L ++ K+ P+WNE F V + + ++ D D +
Sbjct: 30 NMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAV 89
Query: 93 GE 94
GE
Sbjct: 90 GE 91
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 52.0 bits (125), Expect = 4e-10
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS 74
+++ A L GG +PY+++++ D K T+V + T P +NE+FT V
Sbjct: 48 IIQAAELPALDMGG---TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 104
Query: 75 I----ILFRLLDHRTFRRDCTIGE 94
+ ++ + D F + IGE
Sbjct: 105 LGGKTLVMAVYDFDRFSKHDIIGE 128
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 52.0 bits (125), Expect = 5e-10
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS 74
+++ A L GG +PY+++++ D K T+V + T P +NE+FT V
Sbjct: 40 IIQAAELPALDMGG---TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 96
Query: 75 I----ILFRLLDHRTFRRDCTIGE 94
+ ++ + D F + IGE
Sbjct: 97 LGGKTLVMAVYDFDRFSKHDIIGE 120
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 49.3 bits (118), Expect = 4e-09
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS 74
+++ L G +P++++Y+ D K+ T+V + P WNE F PY
Sbjct: 32 IMKAQELPAKDFSG---TSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYE 88
Query: 75 IILFRLL-----DHRTFRRDCTIGE 94
++ R+L D+ F R+ IGE
Sbjct: 89 KVVQRILYLQVLDYDRFSRNDPIGE 113
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 49.0 bits (117), Expect = 7e-09
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 11 VLQLLQLVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTV 68
V++ L Q NPY+++ + D KN K T V + T +P + E +T
Sbjct: 32 VIEARDLPPPISHDGSRQDMAH--SNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTF 89
Query: 69 LVSPYSI----ILFRLLDHRTFRRDCTIGE 94
+ +L ++D F R C IG+
Sbjct: 90 EIPFLEAQRRTLLLTVVDFDKFSRHCVIGK 119
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 48.9 bits (117), Expect = 7e-09
Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 13/85 (15%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPK-TTRVVKNTYQPKWNEEFTVLVSPY 73
+E G + Y++ V + + T + K W E + ++
Sbjct: 32 RLEAVTSNHDG------GCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEE 85
Query: 74 SI----ILFRLLDHRTFRRDCTIGE 94
+ + L F R GE
Sbjct: 86 ELPTATLTLTLRTCDRFSRHSVAGE 110
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 48.1 bits (115), Expect = 1e-08
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPY- 73
++ + +G G L P+PY+EL++ + K TR N P WNE F ++ P
Sbjct: 9 VLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ 68
Query: 74 -SIILFRLLDHRTFRRDCTIGEKRLNTST 101
+++ L+D + +G S+
Sbjct: 69 ENVLEITLMDANYVMDET-LGTATFTVSS 96
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 47.3 bits (113), Expect = 2e-08
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 37 PYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV-SPYSIILFRLLDHRTFRRDCTIGE 94
P+ L + + T V P+WN+ FT + + ++ + D + +G+
Sbjct: 36 PFCLLELG-NDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGK 93
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 47.2 bits (112), Expect = 4e-08
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 37 PYIELYV-----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDC 90
PY+ + + T+ +K + PKWNEE V P ILF + D RD
Sbjct: 31 PYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTRDD 90
Query: 91 TIGEKRLNTST 101
+G+ +
Sbjct: 91 FLGQVDVPLYP 101
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 46.6 bits (111), Expect = 5e-08
Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 11/103 (10%)
Query: 6 DYFSSVLQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKT----TRVVKNTYQPK 61
+ L + + + +L G +PY++L + T+ +++T P+
Sbjct: 12 EVTDEKLHV-TVRDAKNLIPMDPNG---LSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQ 67
Query: 62 WNEEFTVLVSPYSI---ILFRLLDHRTFRRDCTIGEKRLNTST 101
WNE FT + P + + D R+ +G S
Sbjct: 68 WNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSE 110
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular
dystrophy, cardiomyopathy, membrane fusion, dystrophin,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 46.6 bits (111), Expect = 5e-08
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 34 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPY-----SIILFRLLDHRTFRR 88
KP+P + + K T+ V N P WNE + S + + D T +
Sbjct: 26 KPDPIVSVIFK-DEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQ 84
Query: 89 DCTIGE 94
+ IG
Sbjct: 85 NKLIGT 90
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 46.1 bits (110), Expect = 6e-08
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 18 VECAHLRRGGQGGGLLKPNPYIELYVDYKNPKT----TRVVKNTYQPKWNEEFTVLVSPY 73
++ +L+ GG +PY+++++ YK+ + T K P +NE F +
Sbjct: 23 IKARNLKAMDIGG---TSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE 79
Query: 74 SI----ILFRLLDHRTFRRDCTIGEKRLNTST 101
+ I+ ++D R+ IG+ L+ +
Sbjct: 80 KLRETTIIITVMDKDKLSRNDVIGKIYLSWKS 111
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 47.2 bits (111), Expect = 1e-07
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPY- 73
++ + +G G L P+PY+EL++ + K TR N P WNE F ++ P
Sbjct: 24 VLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ 83
Query: 74 -SIILFRLLDHRTFRRDCT 91
+++ L+D +
Sbjct: 84 ENVLEITLMDANYVMDETL 102
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 45.9 bits (109), Expect = 1e-07
Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Query: 6 DYFSSVLQLLQLVECAHLRRGGQGGGLLKPNPYIELYV--DYKNP--KTTRVVKNTYQPK 61
+ L++ +++ L + P PY+++Y+ + K TR+ + T P
Sbjct: 26 EDKKGQLEV-EVIRARSLTQKPGSKST--PAPYVKVYLLENGACIAKKKTRIARKTLDPL 82
Query: 62 WNEEFTVLVSPYSIILFRLL--DHRTFRRDCTIGE 94
+ + SP +L ++ D+ C +G
Sbjct: 83 YQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGV 117
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 45.5 bits (108), Expect = 2e-07
Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 6 DYFSSVLQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKT----TRVVKNTYQPK 61
VL + + + +L G +PY++L + T+ +K + P+
Sbjct: 27 HIDREVLIV-VVRDAKNLVPMDPNG---LSDPYVKLKLIPDPKSESKQKTKTIKCSLNPE 82
Query: 62 WNEEFTVLVSPY---SIILFRLLDHRTFRRDCTIGEKRLNTST 101
WNE F + + + D R+ +G S
Sbjct: 83 WNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISE 125
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 45.1 bits (107), Expect = 2e-07
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 37 PYIELYV-----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP-YSIILFRLLDHRTFRRDC 90
PY+ + + T+ +K + PKWNEE V P +LF + D RD
Sbjct: 43 PYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDD 102
Query: 91 TIGE 94
+G+
Sbjct: 103 FLGQ 106
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 45.1 bits (107), Expect = 2e-07
Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 18 VECAHLRRGGQGGGLLKPNPYIELYVDYKNPKT----TRVVKNTYQPKWNEEFTVLVSPY 73
+E +L++ GG +PY+++++ + T + KNT P +NE F+ V
Sbjct: 32 LEAKNLKKMDVGG---LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 88
Query: 74 SI----ILFRLLDHRTFRRDCTIGEKRLNTST 101
I ++ +LD+ ++ IG+ + ++
Sbjct: 89 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS 120
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 44.7 bits (106), Expect = 2e-07
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP 72
++ L+ G +PY++L++ N T+ ++NT P WNE
Sbjct: 35 IIRAKGLKPMDSNG---LADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGIT 91
Query: 73 YSIILFRLL-----DHRTFRRDCTIGEKRLN 98
+ + L D F + IGE R +
Sbjct: 92 EEDMQRKTLRISVCDEDKFGHNEFIGETRFS 122
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 44.6 bits (106), Expect = 2e-07
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNP--KTTRVVKNTYQPKWNEEFTVLVSP 72
+ EC L + NPY++ Y+ D + T + ++T P ++E +
Sbjct: 29 VKECHQLAYADEAKKR--SNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPE 86
Query: 73 YSI----ILFRLLDHRTFRRDCTIGE 94
+ + F + H F R+ +GE
Sbjct: 87 SLLAQRTLQFSVWHHGRFGRNTFLGE 112
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 44.7 bits (106), Expect = 3e-07
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 18 VECAHLRRGGQGGGLLKPNPYIELYVDYKNPKT----TRVVKNTYQPKWNEEFTVLVSPY 73
++ HL + G +PY+++ + + + T V K T +NE F +
Sbjct: 37 LKARHLPKSDVSG---LSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCE 93
Query: 74 SI----ILFRLLDHRTFRRDCTIGE 94
S+ + F +LD R+ IG
Sbjct: 94 SLEEISVEFLVLDSERGSRNEVIGR 118
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 44.7 bits (106), Expect = 3e-07
Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYV-----DYKNPKTTRVVKNTYQPKWNEEFTVLVS 71
+++ ++L Q I + V TR + + +NE F V +S
Sbjct: 49 IIQLSNLSALLQQQD---QKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMS 105
Query: 72 PYSI----ILFRLLDHRTFRRDCTIGEKRLN 98
++ + + + +G +++
Sbjct: 106 YPALHQKTLRVDVCTTDRSHLEECLGGAQIS 136
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 43.4 bits (103), Expect = 7e-07
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 13/87 (14%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP 72
++ L PNPY++ Y+ + + T++ + T P +NE
Sbjct: 26 VMHIKDLVTEDGAD----PNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYS 81
Query: 73 YSIILFRLL-----DHRTFRRDCTIGE 94
+ R L + R + +G
Sbjct: 82 KETLRQRELQLSVLSAESLRENFFLGG 108
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 43.9 bits (104), Expect = 7e-07
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 17 LVECAHLRRGGQGGGLLKPNPY--IELYVDYKNPKT--TRVVKNTYQPKWNEEFTVLVSP 72
++ C HL G +P+ + L D T++ K T P++NEEF +
Sbjct: 43 IIRCVHLAAMDANG---YSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKH 99
Query: 73 YSI----ILFRLLDHRTFRRDCTIGEKRLNTST 101
+ + + D+ + + IG +L S
Sbjct: 100 SDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA 132
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 42.1 bits (99), Expect = 3e-06
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 37 PYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLV-SPYSIILFRLLDH 83
PY+ + V K K T+ + P W E F + I R+LD
Sbjct: 40 PYVTVQVG-KTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDE 86
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 40.8 bits (96), Expect = 7e-06
Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 21/96 (21%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELY-------------VDYKNPKTTRVVKNTYQPKWN 63
+++ +L G +P++++Y + + T+ V+ + P+WN
Sbjct: 24 ILQARNLVPRDNNG---YSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWN 80
Query: 64 EEFTVLVSPYSIILFRLL-----DHRTFRRDCTIGE 94
+ ++ + L D+ F + +GE
Sbjct: 81 QTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGE 116
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 40.8 bits (96), Expect = 8e-06
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 14/88 (15%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNP--KTTRVVKNTYQPKWNEEFTVLVSP 72
+ C +L + G +PY+ +Y+ D + + T V K T P +++ F VS
Sbjct: 30 VHACRNLIAFSEDG----SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSL 85
Query: 73 YSI----ILFRLLDHRTFRRD--CTIGE 94
+ + + + F +G+
Sbjct: 86 PEVQRRTLDVAVKNSGGFLSKDKGLLGK 113
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 40.4 bits (95), Expect = 1e-05
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP 72
++E L G +PY+++ + + T+ V + P ++E F V
Sbjct: 33 IIEGKGLISKQPG----TCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQE 88
Query: 73 YSI---ILFRLLDH-RTFRRDCTIGEKRLN 98
+L + + R+ IG
Sbjct: 89 EDDQKRLLVTVWNRASQSRQSGLIGCMSFG 118
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 40.4 bits (95), Expect = 1e-05
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 14/96 (14%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP 72
++ L G NPY+++Y KN + T+ VK T +PKWN+ F
Sbjct: 27 ILGAKDLPSREDGR---PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVH 83
Query: 73 YSIILFRLL-----DHRTFR--RDCTIGEKRLNTST 101
R+L D R +GE + T
Sbjct: 84 RREFRERMLEITLWDQARVREEESEFLGEILIELET 119
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 39.2 bits (92), Expect = 3e-05
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 14/96 (14%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSP 72
++ L G NPY+++Y KN + T+ VK T +PKWN+ F
Sbjct: 24 ILGAKDLPSREDGR---PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVH 80
Query: 73 YSIILFRLL-----DHRTF--RRDCTIGEKRLNTST 101
R+L D +GE + T
Sbjct: 81 RREFRERMLEITLWDQARVREEESEFLGEILIELET 116
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich,
phosphotyrosine binding, TCR, T-cell, diacylglycerol,
phorbol ester, structural genomics; NMR {Homo sapiens}
Length = 138
Score = 38.1 bits (88), Expect = 8e-05
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 36 NPYIELYVD----YKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDH-RTFRRDC 90
NPY + V +N + K T P W+ F ++ ++ + +
Sbjct: 33 NPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKGRVMQIIVKGKNVDLISET 92
Query: 91 TIG 93
T+
Sbjct: 93 TVE 95
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 38.4 bits (88), Expect = 1e-04
Identities = 16/86 (18%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 15 LQLVECAHL-RRGGQGGGLLKPNPYIELY---VDYKNPKTTRVVKNTYQPKWNEE--FTV 68
++++ L + ++ P +E++ D + +T + N + P+W+ E F V
Sbjct: 501 VRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEV 560
Query: 69 LVSPYSIILFRLLDHRTFRRDCTIGE 94
V +++ F + D+ + ++ IG+
Sbjct: 561 TVPDLALVRFMVEDYDSSSKNDFIGQ 586
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 38.0 bits (87), Expect = 2e-04
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 36 NPYIELYVDYKNPKTTRVVKNTYQPKWNEEFT---VLVSPYSIILFRLLDHRTFRRD 89
+ Y++++ + +T VV N P+W ++ VL+S + ++ D D
Sbjct: 415 DAYLKVFFGGQEFRT-GVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDD 470
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding,
neurotransmitter release, RIM, MUNC13 domains,
exocytosis, metal-binding; 1.44A {Rattus norvegicus}
SCOP: b.7.1.1
Length = 131
Score = 36.5 bits (84), Expect = 3e-04
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 34 KPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSI-ILFRLLDHRTFRRD 89
K N Y+ L V N K+T + QP W ++F ++ + + + +
Sbjct: 22 KFNTYVTLKVQ--NVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKGLIWDT 76
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V
hearing, membrane, synapse, transmembrane, membrane
protein; 1.95A {Rattus norvegicus}
Length = 144
Score = 35.0 bits (80), Expect = 0.001
Identities = 9/70 (12%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 34 KPNPYIELYVDYKNPKTTRVVKNTYQP-KWNEEFT-VLVSP---YSIILFRLLDHRTFRR 88
+ + ++ +RV++N ++E F + S ++ ++ ++
Sbjct: 36 RADRIAKVTFR-GQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFS 94
Query: 89 DCTIGEKRLN 98
+ IG R+
Sbjct: 95 NKLIGTFRMV 104
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 33.1 bits (75), Expect = 0.006
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 36 NPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILF 78
N Y+ L V N ++T + QP W ++F ++ + L
Sbjct: 33 NTYVTLKVQ--NVESTTIAVRGSQPSWEQDFMFEINRLDLGLT 73
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein
binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Length = 126
Score = 32.4 bits (73), Expect = 0.008
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 36 NPYIELYVDYK----NPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDH-RTFRRDC 90
P+ + + KT K T P+W F + +I L+ +
Sbjct: 28 QPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAAEEPVSEV 87
Query: 91 TIG 93
T+G
Sbjct: 88 TVG 90
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.022
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 24/64 (37%)
Query: 3 LLQDYFSSVLQ------------LLQLVECAHLRR----GGQGGGLLKPNPYI----ELY 42
L+++Y ++ + L + V + + GGQG + Y +LY
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG----NTDDYFEELRDLY 177
Query: 43 VDYK 46
Y
Sbjct: 178 QTYH 181
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation,
membrane, phosphoprotein, SH3-binding, signaling
protein; 3.00A {Rattus norvegicus}
Length = 483
Score = 30.3 bits (67), Expect = 0.081
Identities = 14/73 (19%), Positives = 19/73 (26%), Gaps = 8/73 (10%)
Query: 34 KPNPYIELYVDYKNPKTTRVVKNTYQPK---WNEEFTVLVSPYSIILFRLL-----DHRT 85
K Y EL +D T + W E F P L L R
Sbjct: 26 KKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRK 85
Query: 86 FRRDCTIGEKRLN 98
+ +G +
Sbjct: 86 KDKAGYVGLVTVP 98
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 30.4 bits (67), Expect = 0.085
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 27 GQGGGLLKPNPYIELYV-----DYKNPKTTRVVK-NTYQPKWNEE---FTVLVSPY-SII 76
GQ K Y+E+ + D + TR + N++ P W+EE F +V P + +
Sbjct: 734 GQFLSDRKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASL 793
Query: 77 LFRLLDH-RTFRRDCTI 92
+ F +
Sbjct: 794 RIAAFEEGGKFVGHRIL 810
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 30.0 bits (68), Expect = 0.099
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 65 EFTVLVS--PYSI---ILFRLLDHRTFRRDCTI 92
F V+ PY I +F+LL HR F R +
Sbjct: 93 FFDTCVANLPYQISSPFVFKLLLHRPFFRCAIL 125
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 27.7 bits (62), Expect = 0.50
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 64 EEFTVLVS--PYSI---ILFRLLDHRTFRRDCTI 92
+F V + PY I ++F+L+ HR + +
Sbjct: 105 PKFDVCTANIPYKISSPLIFKLISHRPLFKCAVL 138
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 26.8 bits (58), Expect = 1.6
Identities = 7/61 (11%), Positives = 27/61 (44%), Gaps = 11/61 (18%)
Query: 34 KPNPYIELYVD------YKNPKTTRVVK-NTYQPKWNEE----FTVLVSPYSIILFRLLD 82
+ + Y+E+ + + T++++ N P ++E+ V++ +++ + +
Sbjct: 666 QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE 725
Query: 83 H 83
Sbjct: 726 E 726
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 26.1 bits (56), Expect = 2.4
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 11/61 (18%)
Query: 34 KPNPYIELYV-----DYKNPKTTRVV--KNTYQPKWNEE----FTVLVSPYSIILFRLLD 82
Y+E+ + D K T++ N+ P W EE +L+ + + +++
Sbjct: 694 SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVME 753
Query: 83 H 83
Sbjct: 754 E 754
>2y2w_A Arabinofuranosidase; hydrolase, arabinoxylan, glycoside hydrolase
family 51; 2.50A {Bifidobacterium longum}
Length = 574
Score = 26.1 bits (56), Expect = 2.6
Identities = 4/34 (11%), Positives = 6/34 (17%)
Query: 47 NPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRL 80
P+ T + S I
Sbjct: 531 APEAVTPQPLDIAMNATGTCTATLPAISWISVEF 564
>1wcg_A Thioglucosidase, myrosinase; aphid, beta-glucosidase, insect,
beta-barrel, hydrolase, glycosidase; 1.10A {Brevicoryne
brassicae} SCOP: c.1.8.4
Length = 464
Score = 25.6 bits (57), Expect = 3.0
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 42 YVDYKNPKTTRVVK 55
+D+ +P+ TR +
Sbjct: 436 KIDFNDPQRTRTKR 449
>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A
{Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A
Length = 504
Score = 25.6 bits (55), Expect = 4.0
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 51 TRVVKNTYQPKWNEEFTVLVSPYSIILFRL 80
V + + EF P+S + +
Sbjct: 472 NVVDITSETITVDTEFEHTFKPFSCSVIEV 501
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis;
1.98A {Coxiella burnetii}
Length = 255
Score = 25.1 bits (56), Expect = 4.2
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 3/24 (12%)
Query: 72 PYSI---ILFRLLDHRTFRRDCTI 92
PY+I +LF L D
Sbjct: 105 PYNISTPLLFHLFSQIHCIEDMHF 128
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 25.0 bits (54), Expect = 4.9
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 34 KPNPYIELYVDYKNPKTTRVVKNTYQPKWN--EEFTVLVSPYSIILFRLLDHRTFRRDCT 91
K NPY E+ + TTR +++T PKWN +F + ++ L D F D
Sbjct: 407 KSNPYCEISMG-SQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDF 465
Query: 92 IGEKRLNTST 101
+G + +
Sbjct: 466 LGRTEIPVAK 475
>2c7f_A Alpha-L-arabinofuranosidase; glycosidase, xylan, arabinan,
hydrolase; HET: AHR; 2.7A {Clostridium thermocellum}
SCOP: b.71.1.2 c.1.8.3 PDB: 2c8n_A
Length = 513
Score = 24.9 bits (53), Expect = 5.6
Identities = 4/34 (11%), Positives = 11/34 (32%)
Query: 47 NPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRL 80
N + + + T ++ S + R+
Sbjct: 478 NGEEVYPKNSDKSSFDDGILTSMLRRASWNVIRI 511
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate,
glycolysis, MAG metal-binding, oxidoreductase, thiamine
pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A*
2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Length = 886
Score = 25.1 bits (55), Expect = 5.9
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 1 MFLLQDYFSSVLQLLQLV------ECAHLRRGGQ 28
++ + +F + LV + L RGG
Sbjct: 331 AYVREHFFGKYPETAALVADWTDEQIWALNRGGH 364
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle
structural genomics center for infectio disease; 1.75A
{Burkholderia pseudomallei}
Length = 279
Score = 24.4 bits (54), Expect = 6.8
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 3/24 (12%)
Query: 72 PYSI---ILFRLLDHRTFRRDCTI 92
PY+I +LF L+ D
Sbjct: 123 PYNISSPLLFHLMSFAPVVIDQHF 146
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF,
tethering complex, RAB activation, GU nucleotide
exchange factor; HET: PLM; 3.70A {Saccharomyces
cerevisiae}
Length = 159
Score = 24.1 bits (52), Expect = 8.0
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 10/51 (19%)
Query: 38 YIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDHRTFRR 88
Y +YV Y V N +F + R + +R F
Sbjct: 107 YSHIYVKY-------VSNN---LLSPYDFAENENEMRGQGTRKITNRNFIS 147
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein
STRU initiative, midwest center for structural genomics,
MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP:
a.4.5.68 d.113.1.6
Length = 226
Score = 24.2 bits (52), Expect = 8.5
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 64 EEFTV--LVSPYSIILFRLLDHRTFRR 88
+ FT+ L S Y I +D R FR+
Sbjct: 159 KLFTLSQLQSLYEAIYGEPMDKRNFRK 185
>2la3_A Uncharacterized protein; ATP binding, CTP binding, structural
genomics, PSI-biology, structure initiative; NMR
{Streptococcus pneumoniae}
Length = 191
Score = 24.2 bits (52), Expect = 8.6
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 31 GLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNE 64
++P P+ D TR+ K +Q KW
Sbjct: 152 FQVRPTPHFLENEDRMELYQTRLSKKNWQEKWKN 185
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH
domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A*
3gz8_A*
Length = 240
Score = 24.3 bits (52), Expect = 8.9
Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 64 EEFTV--LVSPYSIILFRLLDHRTFRR 88
E FT+ L + ++L + + ++FRR
Sbjct: 172 EPFTLPELQHVHEVLLGKPIQGKSFRR 198
>3vii_A Beta-glucosidase; cellulases, glycosyl hydrolase, hydrolase; HET:
BTB; 0.97A {Neotermes koshunensis} PDB: 3ahz_A* 3vif_A*
3vih_A 3vig_A* 3vim_A* 3ai0_A* 3vin_A* 3vio_A* 3vip_A*
3vij_A* 3vik_A* 3vil_A*
Length = 487
Score = 24.0 bits (53), Expect = 9.8
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 42 YVDYKNPKTTRVVK 55
VD+++P R+ K
Sbjct: 445 AVDFEDPARPRIPK 458
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.431
Gapped
Lambda K H
0.267 0.0808 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,533,986
Number of extensions: 76228
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 71
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)