RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16330
(101 letters)
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 136
Score = 45.5 bits (107), Expect = 5e-08
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVS-PYSI 75
LV L +PY++L ++ K+ P+WNE F VS +
Sbjct: 16 LVSAKGLEDADFLN---NMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTE 72
Query: 76 ILFRLLDHRTFRRDCTIGEKRLN 98
+ ++ D D +GE +
Sbjct: 73 LKAKIFDKDVGTEDDAVGEATIP 95
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 43.6 bits (102), Expect = 3e-07
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS-- 74
+ E L + P + + + K+ TRV++ T P ++E FT PY+
Sbjct: 28 IKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQI 87
Query: 75 ---IILFRLLDHRTFRRDCTIGEKRLNTST 101
+ F +L F RD IGE + S
Sbjct: 88 QELALHFTILSFDRFSRDDIIGEVLIPLSG 117
>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 136
Score = 42.2 bits (98), Expect = 9e-07
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 9/100 (9%)
Query: 7 YFSSVLQLLQLVECAHLR--------RGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTY 58
F+ +L++ ++ E L+ G +PYI L VD T + T
Sbjct: 3 VFNGLLKI-KICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTN 61
Query: 59 QPKWNEEFTVLVSPYSIILFRLLDHRTFRRDCTIGEKRLN 98
P W++EF V I + D + +
Sbjct: 62 SPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQ 101
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 41.6 bits (97), Expect = 1e-06
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYVDYKNP----KTTRVVKNTYQPKWNEEFTVLVSP 72
+++ HL + G +PY+++ + + K T V K T +NE F +
Sbjct: 21 VLKARHLPKSDVSG---LSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPC 77
Query: 73 ----YSIILFRLLDHRTFRRDCTIGEKRLNTST 101
+ F +LD R+ IG L +
Sbjct: 78 ESLEEISVEFLVLDSERGSRNEVIGRLVLGATA 110
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 40.5 bits (94), Expect = 3e-06
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP 72
+ + +L G +PY++L + ++ + T+ +K + P+WNE F +
Sbjct: 21 VRDAKNLVPMDPNG---LSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKE 77
Query: 73 Y---SIILFRLLDHRTFRRDCTIGEKRLNTST 101
+ + D R+ +G S
Sbjct: 78 SDKDRRLSVEIWDWDLTSRNDFMGSLSFGISE 109
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 40.5 bits (94), Expect = 3e-06
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 14/96 (14%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSP 72
++ L G NPY+++Y KN + T+ VK T +PKWN+ F
Sbjct: 20 ILGAKDLPSREDGR---PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVH 76
Query: 73 Y-----SIILFRLLDHRTFR--RDCTIGEKRLNTST 101
++ L D R +GE + T
Sbjct: 77 RREFRERMLEITLWDQARVREEESEFLGEILIELET 112
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme
D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 131
Score = 40.1 bits (93), Expect = 4e-06
Identities = 14/87 (16%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 15 LQLVECAHLRRGGQGGGLLKPNPYIELYV-----DYKNPKTTRVVKNTYQPKWNEEFTVL 69
++++ L + + +P + + + D + +T + N + P+W+ EF
Sbjct: 8 VRIISGQQLPKVNKNKNS-IVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFE 66
Query: 70 VSP--YSIILFRLLDHRTFRRDCTIGE 94
V+ +++ F + D+ + ++ IG+
Sbjct: 67 VTVPDLALVRFMVEDYDSSSKNDFIGQ 93
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 40.2 bits (93), Expect = 7e-06
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 34 KPNPYIELYVDYKN----PKTTRVVKNTYQPKWNEEFTVLVSP----YSIILFRLLDHRT 85
+PY+++++ K T + KNT P +NE F+ V ++ +LD+
Sbjct: 45 LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK 104
Query: 86 FRRDCTIGEKRLNTST 101
++ IG+ + ++
Sbjct: 105 IGKNDAIGKVFVGYNS 120
>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 123
Score = 38.2 bits (88), Expect = 2e-05
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 36 NPYIELYVDY----KNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLLDH-RTFRRDC 90
P+ + + KT K T P+W F + +I L+ +
Sbjct: 25 QPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAAEDPMSEV 84
Query: 91 TIGEKRLN 98
T+G L
Sbjct: 85 TVGVSVLA 92
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 137
Score = 38.3 bits (88), Expect = 3e-05
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 34 KPNPYIELYV----DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYSIILFRLL----DHRT 85
+P+++L++ K T++ K T P++NEEF + + L D+
Sbjct: 35 YSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI 94
Query: 86 FRRDCTIGEKRLNTST 101
+ + IG +L S
Sbjct: 95 GKSNDYIGGCQLGISA 110
>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 34.3 bits (78), Expect = 5e-04
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 17 LVECAHLRRGGQGGGLLKPNPYIELYV--DYKNPKTTRVVKNTYQPKWNEEFTVLVSPYS 74
++ + +G G L P+PY+EL++ + K TR N P WNE F ++ P
Sbjct: 9 VLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ 68
Query: 75 IILFRL-LDHRTFRRDCTIGEKRLNTST 101
+ + L + D T+G S+
Sbjct: 69 ENVLEITLMDANYVMDETLGTATFTVSS 96
>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens)
[TaxId: 9606]}
Length = 138
Score = 33.3 bits (75), Expect = 0.002
Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 14/104 (13%)
Query: 6 DYFSSVLQLL-QLVECAHLRRGGQGGGLLKPNPYIELYV---DYKNPKTTRVVKNTYQPK 61
DY +L +E G + Y++ V T + K
Sbjct: 20 DYDCQKAELFVTRLEAVTSNHDG------GCDCYVQGSVANRTGSVEAQTALKKRQLHTT 73
Query: 62 WNEEFTVLVS----PYSIILFRLLDHRTFRRDCTIGEKRLNTST 101
W E + ++ P + + L F R GE RL
Sbjct: 74 WEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDG 117
>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 122
Score = 29.9 bits (67), Expect = 0.022
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 34 KPNPYIELYV-----DYKNPKTTRVV--KNTYQPKWNEEFTVLVSPYSIILFRLLDHRTF 86
Y+E+ + D K T++ N+ P W EE V L L
Sbjct: 17 SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVME 76
Query: 87 RRDCTIGE 94
+ +G
Sbjct: 77 EGNKFLGH 84
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 130
Score = 29.5 bits (65), Expect = 0.035
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 46 KNPKTTRVVKNTYQPKWNEEFTVLVSPYSI----ILFRLLDHRTFRRDCTIGEKRLN 98
K T+V + T P +NE F V + + F + D F R IG+ L+
Sbjct: 52 KKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLD 108
>d1ktba1 b.71.1.1 (A:294-388) Melibiase {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 95
Score = 24.0 bits (52), Expect = 2.5
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 61 KWNEEFTVLVSPYSIILFRL 80
K + FTV+++P ++++ L
Sbjct: 72 KTGDNFTVIINPSGVVMWYL 91
>d1ccza2 b.1.1.3 (A:94-171) CD2-binding domain of CD58, second
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 23.7 bits (51), Expect = 2.9
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 36 NPYIELYVDYKNPKTTRVVKNTYQ-PKWNEEFTVLVS 71
+ ++LY ++ ++ R +YQ F
Sbjct: 26 DVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAV 62
>d1r46a1 b.71.1.1 (A:324-421) Melibiase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 98
Score = 23.7 bits (51), Expect = 3.3
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 61 KWNEEFTVLVSPYSIILFRL 80
+W ++P +L +L
Sbjct: 75 EWTSRLRSHINPTGTVLLQL 94
>d1wcga1 c.1.8.4 (A:3-464) Thioglucosidase {Cabbage aphid
(Brevicoryne brassicae) [TaxId: 69196]}
Length = 462
Score = 24.4 bits (52), Expect = 3.7
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 42 YVDYKNPKTTRVVKNTYQ 59
+D+ +P+ TR + +Y
Sbjct: 434 KIDFNDPQRTRTKRESYT 451
>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 393
Score = 23.8 bits (49), Expect = 4.8
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 10 SVLQLLQLVECAHLRRGGQGGGLLKPNPYIELYVDYKNPKTTRVVKNTYQPKWNEE 65
SV +L LV A + G + PNP +E Y N K T++++ +P + +
Sbjct: 299 SVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSD 354
>d2fb1a1 a.4.5.68 (A:150-225) Hypothetical protein BT0354,
C-terminal domain {Bacteroides thetaiotaomicron [TaxId:
818]}
Length = 76
Score = 22.3 bits (48), Expect = 7.5
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 64 EEFTV--LVSPYSIILFRLLDHRTFRR 88
+ FT+ L S Y I +D R FR+
Sbjct: 9 KLFTLSQLQSLYEAIYGEPMDKRNFRK 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.141 0.431
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 383,056
Number of extensions: 16026
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 25
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.2 bits)