BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16332
         (359 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XDQ|A Chain A, Dark Operative Protochlorophyllide Oxidoreductase (Chln-
           Chlb)2 Complex
          Length = 460

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 81  SGKQHTFVETDSVRYVYQPLEKLYMLLITTKT 112
           +G  HTF     V ++YQ +E  + L+I TKT
Sbjct: 15  TGNYHTFCPISCVAWLYQKIEDSFFLVIGTKT 46


>pdb|3V7R|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
           Ligase In Complex With Inhibitor
 pdb|3V8J|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
           Ligase
 pdb|3V8K|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
           Ligase In Complex With Biotin
 pdb|3V8L|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
           Ligase In Complex With Biotinyl-5'-Amp
          Length = 329

 Score = 28.1 bits (61), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 6   GLFMDENEVTDNAFSLIFAFDEIVALGYRESV-NLAQEATKIKLKN 50
           GL+M      + AFS+I  F+  +ALG R+++ + +Q+  K+K  N
Sbjct: 140 GLWMSVVLRPNVAFSMISKFNLFIALGIRDAIQHFSQDEVKVKWPN 185


>pdb|3V7C|A Chain A, Cystal Structure Of Sabpl In Complex With Inhibitor
 pdb|3V7S|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
           Ligase In Complex With Inhibitor 0364
          Length = 329

 Score = 28.1 bits (61), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 6   GLFMDENEVTDNAFSLIFAFDEIVALGYRESV-NLAQEATKIKLKN 50
           GL+M      + AFS+I  F+  +ALG R+++ + +Q+  K+K  N
Sbjct: 134 GLWMSVVLRPNVAFSMISKFNLFIALGIRDAIQHFSQDEVKVKWPN 179


>pdb|4DQ2|A Chain A, Structure Of Staphylococcus Aureus Biotin Protein Ligase
           In Complex With Biotinol-5'-Amp
          Length = 328

 Score = 28.1 bits (61), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 6   GLFMDENEVTDNAFSLIFAFDEIVALGYRESV-NLAQEATKIKLKN 50
           GL+M      + AFS+I  F+  +ALG R+++ + +Q+  K+K  N
Sbjct: 133 GLWMSVVLRPNVAFSMISKFNLFIALGIRDAIQHFSQDEVKVKWPN 178


>pdb|3RIR|A Chain A, Crystal Strucrture Of Biotin Protein Ligase From S. Aureus
 pdb|3RKW|A Chain A, Structural Characterisation Of Staphylococcus Aureus
           Biotin Protein Ligase
 pdb|3RKX|A Chain A, Structural Characterisation Of Staphylococcus Aureus
           Biotin Protein Ligase
 pdb|3RKY|A Chain A, Structural Characterisation Of Staphylococcus Aureus
           Biotin Protein Ligase
          Length = 323

 Score = 28.1 bits (61), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 6   GLFMDENEVTDNAFSLIFAFDEIVALGYRESV-NLAQEATKIKLKN 50
           GL+M      + AFS+I  F+  +ALG R+++ + +Q+  K+K  N
Sbjct: 134 GLWMSVVLRPNVAFSMISKFNLFIALGIRDAIQHFSQDEVKVKWPN 179


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,895,412
Number of Sequences: 62578
Number of extensions: 381512
Number of successful extensions: 680
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 677
Number of HSP's gapped (non-prelim): 10
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)