BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16332
(359 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q66H80|COPD_RAT Coatomer subunit delta OS=Rattus norvegicus GN=Arcn1 PE=2 SV=1
Length = 511
Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/177 (53%), Positives = 128/177 (72%), Gaps = 14/177 (7%)
Query: 129 THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSG 188
THPNVDK+LF +++ IGLKNP K FP+N+D+GVLKWR +T+ES +PL+INCWPS++G+
Sbjct: 329 THPNVDKKLFTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGN- 387
Query: 189 GCDVNIEYELEHEEKELNQVTISIPLPLHC-TPNVTECDGDYNYDARKNTLTWSLALIDS 247
GCDVNIEYEL+ + ELN V I+IPLP P + E DG+Y +D+R+NTL W L +ID+
Sbjct: 388 GCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDA 447
Query: 248 SNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKIFIEKLFLLHCTPNVTECDGD 304
NKSG+LEFS P +DFFP+QVSF ++Y NI++ VT+ DG+
Sbjct: 448 KNKSGSLEFSIP-GQPNDFFPVQVSFISKKNYCNIQV-----------TKVTQVDGN 492
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/75 (90%), Positives = 73/75 (97%)
Query: 54 AIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTS 113
AIVSRQFVEMTR RIEGLLAAFPKLM++GKQHTFVET+SVRYVYQP+EKLYM+LITTK S
Sbjct: 15 AIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNS 74
Query: 114 NILEDLETLRLFSRV 128
NILEDLETLRLFSRV
Sbjct: 75 NILEDLETLRLFSRV 89
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 31/33 (93%)
Query: 9 MDENEVTDNAFSLIFAFDEIVALGYRESVNLAQ 41
++ENE++++ F LIFAFDEIVALGYRE+VNLAQ
Sbjct: 97 LEENEISEHCFDLIFAFDEIVALGYRENVNLAQ 129
>sp|Q5XJY5|COPD_MOUSE Coatomer subunit delta OS=Mus musculus GN=Arcn1 PE=2 SV=2
Length = 511
Score = 200 bits (508), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/177 (53%), Positives = 128/177 (72%), Gaps = 14/177 (7%)
Query: 129 THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSG 188
THPNVDK+LF +++ IGLKNP K FP+N+D+GVLKWR +T+ES +PL+INCWPS++G+
Sbjct: 329 THPNVDKKLFTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGN- 387
Query: 189 GCDVNIEYELEHEEKELNQVTISIPLPLHC-TPNVTECDGDYNYDARKNTLTWSLALIDS 247
GCDVNIEYEL+ + ELN V I+IPLP P + E DG+Y +D+R+NTL W L +ID+
Sbjct: 388 GCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDA 447
Query: 248 SNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKIFIEKLFLLHCTPNVTECDGD 304
NKSG+LEFS P +DFFP+QVSF ++Y NI++ VT+ DG+
Sbjct: 448 KNKSGSLEFSIP-GQPNDFFPVQVSFISKKNYCNIQV-----------TKVTQVDGN 492
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/75 (90%), Positives = 73/75 (97%)
Query: 54 AIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTS 113
AIVSRQFVEMTR RIEGLLAAFPKLM++GKQHTFVET+SVRYVYQP+EKLYM+LITTK S
Sbjct: 15 AIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNS 74
Query: 114 NILEDLETLRLFSRV 128
NILEDLETLRLFSRV
Sbjct: 75 NILEDLETLRLFSRV 89
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 31/33 (93%)
Query: 9 MDENEVTDNAFSLIFAFDEIVALGYRESVNLAQ 41
++ENE++++ F LIFAFDEIVALGYRE+VNLAQ
Sbjct: 97 LEENEISEHCFDLIFAFDEIVALGYRENVNLAQ 129
>sp|Q5RA77|COPD_PONAB Coatomer subunit delta OS=Pongo abelii GN=ARCN1 PE=2 SV=1
Length = 511
Score = 198 bits (503), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 94/177 (53%), Positives = 128/177 (72%), Gaps = 14/177 (7%)
Query: 129 THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSG 188
THPNVDK+LF +++ IGLKNP K FP+N+D+GVLKWR +T+ES +PL+INCWPS++G+
Sbjct: 329 THPNVDKKLFTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGN- 387
Query: 189 GCDVNIEYELEHEEKELNQVTISIPLPLHC-TPNVTECDGDYNYDARKNTLTWSLALIDS 247
GCDVNIEYEL+ + ELN V I+IPLP P + E DG+Y +D+R+NTL W L +ID+
Sbjct: 388 GCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDA 447
Query: 248 SNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKIFIEKLFLLHCTPNVTECDGD 304
NKSG+LEFS + +DFFP+QVSF ++Y NI++ VT+ DG+
Sbjct: 448 KNKSGSLEFSI-AGQPNDFFPVQVSFVSKKNYCNIQV-----------TKVTQVDGN 492
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/75 (90%), Positives = 73/75 (97%)
Query: 54 AIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTS 113
AIVSRQFVEMTR RIEGLLAAFPKLM++GKQHTFVET+SVRYVYQP+EKLYM+LITTK S
Sbjct: 15 AIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNS 74
Query: 114 NILEDLETLRLFSRV 128
NILEDLETLRLFSRV
Sbjct: 75 NILEDLETLRLFSRV 89
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 31/33 (93%)
Query: 9 MDENEVTDNAFSLIFAFDEIVALGYRESVNLAQ 41
++ENE++++ F LIFAFDEIVALGYRE+VNLAQ
Sbjct: 97 LEENEISEHCFDLIFAFDEIVALGYRENVNLAQ 129
>sp|P48444|COPD_HUMAN Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE=1 SV=1
Length = 511
Score = 198 bits (503), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 94/177 (53%), Positives = 128/177 (72%), Gaps = 14/177 (7%)
Query: 129 THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSG 188
THPNVDK+LF +++ IGLKNP K FP+N+D+GVLKWR +T+ES +PL+INCWPS++G+
Sbjct: 329 THPNVDKKLFTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGN- 387
Query: 189 GCDVNIEYELEHEEKELNQVTISIPLPLHC-TPNVTECDGDYNYDARKNTLTWSLALIDS 247
GCDVNIEYEL+ + ELN V I+IPLP P + E DG+Y +D+R+NTL W L +ID+
Sbjct: 388 GCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDA 447
Query: 248 SNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKIFIEKLFLLHCTPNVTECDGD 304
NKSG+LEFS + +DFFP+QVSF ++Y NI++ VT+ DG+
Sbjct: 448 KNKSGSLEFSI-AGQPNDFFPVQVSFVSKKNYCNIQV-----------TKVTQVDGN 492
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/75 (90%), Positives = 73/75 (97%)
Query: 54 AIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTS 113
AIVSRQFVEMTR RIEGLLAAFPKLM++GKQHTFVET+SVRYVYQP+EKLYM+LITTK S
Sbjct: 15 AIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNS 74
Query: 114 NILEDLETLRLFSRV 128
NILEDLETLRLFSRV
Sbjct: 75 NILEDLETLRLFSRV 89
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 31/33 (93%)
Query: 9 MDENEVTDNAFSLIFAFDEIVALGYRESVNLAQ 41
++ENE++++ F LIFAFDEIVALGYRE+VNLAQ
Sbjct: 97 LEENEISEHCFDLIFAFDEIVALGYRENVNLAQ 129
>sp|P53619|COPD_BOVIN Coatomer subunit delta OS=Bos taurus GN=ARCN1 PE=1 SV=1
Length = 511
Score = 197 bits (502), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 94/177 (53%), Positives = 128/177 (72%), Gaps = 14/177 (7%)
Query: 129 THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSG 188
THPNVDK+LF +++ IGLKNP K FP+N+D+GVLKWR +T+ES +PL+INCWPS++G+
Sbjct: 329 THPNVDKKLFTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGN- 387
Query: 189 GCDVNIEYELEHEEKELNQVTISIPLPLHC-TPNVTECDGDYNYDARKNTLTWSLALIDS 247
GCDVNIEYEL+ + ELN V I+IPLP P + E DG+Y +D+R+NTL W L +ID+
Sbjct: 388 GCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDA 447
Query: 248 SNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKIFIEKLFLLHCTPNVTECDGD 304
NKSG+LEFS + +DFFP+QVSF ++Y NI++ VT+ DG+
Sbjct: 448 KNKSGSLEFSI-AGQPNDFFPVQVSFISKKNYCNIQV-----------TKVTQVDGN 492
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/75 (90%), Positives = 73/75 (97%)
Query: 54 AIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTS 113
AIVSRQFVEMTR RIEGLLAAFPKLM++GKQHTFVET+SVRYVYQP+EKLYM+LITTK S
Sbjct: 15 AIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNS 74
Query: 114 NILEDLETLRLFSRV 128
NILEDLETLRLFSRV
Sbjct: 75 NILEDLETLRLFSRV 89
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 31/33 (93%)
Query: 9 MDENEVTDNAFSLIFAFDEIVALGYRESVNLAQ 41
++ENE++++ F LIFAFDEIVALGYRE+VNLAQ
Sbjct: 97 LEENEISEHCFDLIFAFDEIVALGYRENVNLAQ 129
>sp|Q5ZL57|COPD_CHICK Coatomer subunit delta OS=Gallus gallus GN=ARCN1 PE=2 SV=1
Length = 510
Score = 196 bits (497), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/177 (52%), Positives = 126/177 (71%), Gaps = 14/177 (7%)
Query: 129 THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSG 188
THPNVDK+LF ++++IGLKNP K FP+N+D+GVLKWR +T+ES +PL+INCWPS++G+
Sbjct: 328 THPNVDKKLFTAESQIGLKNPEKSFPINSDVGVLKWRLQTTEESFIPLTINCWPSESGN- 386
Query: 189 GCDVNIEYELEHEEKELNQVTISIPLPLHC-TPNVTECDGDYNYDARKNTLTWSLALIDS 247
CDVNIEYEL+ E ELN V I IPLP P + E DG+Y +D+R+N L W L +ID+
Sbjct: 387 SCDVNIEYELQEESLELNDVVIMIPLPSGVGAPVIGEIDGEYRHDSRRNLLEWCLPVIDA 446
Query: 248 SNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKIFIEKLFLLHCTPNVTECDGD 304
NKSG+LEFS + +DFFP+QVSF ++Y NI++ VT+ DG+
Sbjct: 447 KNKSGSLEFSI-AGQPNDFFPVQVSFISKKNYCNIQV-----------TKVTQVDGN 491
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/75 (90%), Positives = 73/75 (97%)
Query: 54 AIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTS 113
AIVSRQFVEMTR RIEGLLAAFPKLM++GKQHTFVET+SVRYVYQP+EKLYM+LITTK S
Sbjct: 15 AIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNS 74
Query: 114 NILEDLETLRLFSRV 128
NILEDLETLRLFSRV
Sbjct: 75 NILEDLETLRLFSRV 89
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 31/33 (93%)
Query: 9 MDENEVTDNAFSLIFAFDEIVALGYRESVNLAQ 41
++ENE++++ F LIFAFDEIVALGYRE+VNLAQ
Sbjct: 97 LEENEISEHCFDLIFAFDEIVALGYRENVNLAQ 129
>sp|Q09236|COPD_CAEEL Probable coatomer subunit delta OS=Caenorhabditis elegans
GN=C13B9.3 PE=3 SV=1
Length = 515
Score = 162 bits (410), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 102/155 (65%), Gaps = 1/155 (0%)
Query: 130 HPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGG 189
HPN+DK+ ++S + + +K KP+P+N+D+G+LKW+ ++E LP+S NCWP ++ S G
Sbjct: 335 HPNLDKKEWQSSSTLKIKPNGKPYPVNSDVGILKWKMALSEEEQLPISFNCWPQES-SDG 393
Query: 190 CDVNIEYELEHEEKELNQVTISIPLPLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSN 249
VNIEY L+ E+ LN V I +PLP P+V ECDG+Y Y KN + WSLA+IDSSN
Sbjct: 394 VQVNIEYTLQREDITLNNVRIIVPLPTATAPSVGECDGEYEYHKTKNVIVWSLAVIDSSN 453
Query: 250 KSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKI 284
SG LEFS P+ FFP+ V F+ + I +
Sbjct: 454 SSGTLEFSVPNGHCDHFFPVSVGFTSENLFVPITV 488
Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 67/80 (83%), Gaps = 6/80 (7%)
Query: 55 IVSRQFV-EMTRARIEGLLAAFPKLM-----SSGKQHTFVETDSVRYVYQPLEKLYMLLI 108
+V+RQFV +M R+R+EGL+ AFPKL+ ++ +QHTFVETDSVRYVY PL+ +Y++L+
Sbjct: 16 LVARQFVNDMMRSRLEGLVDAFPKLIGNEKEAATRQHTFVETDSVRYVYHPLDNIYLVLV 75
Query: 109 TTKTSNILEDLETLRLFSRV 128
TTK SNILEDLETLRLF RV
Sbjct: 76 TTKNSNILEDLETLRLFVRV 95
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 108/406 (26%), Positives = 167/406 (41%), Gaps = 80/406 (19%)
Query: 10 DENEVTDNAFSLIFAFDEIVALGYRESVNLAQEAT-------------KIKLKNIKIA-- 54
+E E+ + F LIFAFDE+V LGYRESVNLAQ T +IK K A
Sbjct: 104 EEKEILAHDFDLIFAFDEVVTLGYRESVNLAQIRTFTEMDSHEERVFMQIKEAQEKAAKQ 163
Query: 55 IVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQP-----------LEKL 103
++ + E+ RA+ E L S + T + V +P +
Sbjct: 164 AMAEKAKELKRAQKEALSRGLKPSYQSSTGISSSSTPNAAAVSEPAAPRPSAPKGPIGGG 223
Query: 104 YMLLITTKTSNILEDLETLRLFSRV---------------------THPNVDKELFKSKT 142
L + KT+N + L+TLR + T P V +E+ +T
Sbjct: 224 KALKLGGKTNNEDDFLDTLRQQGQSIAPVQKASLSGGVSSLAAPISTAPRVKREVVHVRT 283
Query: 143 EIGLKNPSKPFPLNNDIGVLKWRFTST------DESCLPLSINCWPSDNGSG-GCDVNIE 195
E + ++ D G+ +T +P+SI +NGS G + +
Sbjct: 284 EEKINTR-----VSRDGGLESGEVQATVTLSIGSPEFIPISIKM---NNGSAAGTQLQVH 335
Query: 196 YELEHEEKELNQVTISIPLPLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALE 255
L+ +E + + L PN Y ++ L W +AL S + +
Sbjct: 336 PNLDKKEWQSSST-------LKIKPN----GKPYPVNSDVGILKWKMAL--SEEEQLPIS 382
Query: 256 FSAPSASQSDFFPLQVSFSCNQ---SYANIKIFIEKLFLLHCTPNVTECDGDYNYDARKN 312
F+ SD + + ++ + + N++I + P+V ECDG+Y Y KN
Sbjct: 383 FNCWPQESSDGVQVNIEYTLQREDITLNNVRIIVP--LPTATAPSVGECDGEYEYHKTKN 440
Query: 313 TLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANI 358
+ WSLA+IDSSN SG LEFS P+ FFP+ V F+ + I
Sbjct: 441 VIVWSLAVIDSSNSSGTLEFSVPNGHCDHFFPVSVGFTSENLFVPI 486
>sp|Q0DJA0|COPD1_ORYSJ Coatomer subunit delta-1 OS=Oryza sativa subsp. japonica
GN=Os05g0310800 PE=2 SV=1
Length = 524
Score = 159 bits (401), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 110/158 (69%), Gaps = 4/158 (2%)
Query: 129 THPNVDKELFKSKTEIGLKNPSKPFPLN-NDIGVLKWRFTSTDESCLPLSINCWPSDNGS 187
THPN++K+LF S+ +G K+P++PFP N+ ++KWR DES LPLS+NCWPS +GS
Sbjct: 341 THPNINKDLFNSQQVVGAKDPNRPFPSGQNETPLVKWRIQGMDESSLPLSVNCWPSVSGS 400
Query: 188 GGCDVNIEYELEHEEKELNQVTISIPLP-LHCTPNVTECDGDYNYDARKNTLTWSLALID 246
VNIEYE E +L+ V ISIPLP L P+V + DG++ YD+R + L WS+ LID
Sbjct: 401 E-TYVNIEYE-AAEMFDLHNVVISIPLPALREAPSVRQIDGEWKYDSRNSVLEWSILLID 458
Query: 247 SSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKI 284
SN+SG++EF P A S FFP+ + FS + +++++K+
Sbjct: 459 QSNRSGSMEFVVPPADPSTFFPISIGFSASSTFSDLKV 496
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 75/86 (87%), Gaps = 3/86 (3%)
Query: 54 AIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTS 113
A+VSRQFV+M+R RIEGLLAAFPKL+ +GKQHT+VET++VRYVYQP+E LY+LLIT K S
Sbjct: 15 ALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEGLYLLLITNKQS 74
Query: 114 NILEDLETLRLFSRVT---HPNVDKE 136
NILEDL+TLRL S++ P++D+E
Sbjct: 75 NILEDLDTLRLLSKLVPEYSPSLDEE 100
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 63/109 (57%), Gaps = 16/109 (14%)
Query: 267 FPLQV----SFSCNQSYANIKIFIEKLFLLHCT------------PNVTECDGDYNYDAR 310
PL V S S +++Y NI+ ++F LH P+V + DG++ YD+R
Sbjct: 387 LPLSVNCWPSVSGSETYVNIEYEAAEMFDLHNVVISIPLPALREAPSVRQIDGEWKYDSR 446
Query: 311 KNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIK 359
+ L WS+ LID SN+SG++EF P A S FFP+ + FS + +++++K
Sbjct: 447 NSVLEWSILLIDQSNRSGSMEFVVPPADPSTFFPISIGFSASSTFSDLK 495
Score = 38.9 bits (89), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 9 MDENEVTDNAFSLIFAFDEIVALGYRESVNLAQ 41
+DE V AF LIFAFDE ++LG +E+V + Q
Sbjct: 97 LDEEGVCKTAFELIFAFDEAISLGNKENVTVQQ 129
>sp|P49661|COPD3_ORYSJ Coatomer subunit delta-3 OS=Oryza sativa subsp. japonica
GN=Os01g0833700 PE=2 SV=2
Length = 518
Score = 158 bits (399), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 111/158 (70%), Gaps = 4/158 (2%)
Query: 129 THPNVDKELFKSKTEIGLKNPSKPFPLN-NDIGVLKWRFTSTDESCLPLSINCWPSDNGS 187
THPN++KELF S+ +G K+P++PFP N+ ++KWR +ES LPL++NCWPS +G+
Sbjct: 335 THPNINKELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQELNESSLPLAVNCWPSVSGN 394
Query: 188 GGCDVNIEYELEHEEKELNQVTISIPLP-LHCTPNVTECDGDYNYDARKNTLTWSLALID 246
VNIEYE E +L+ V ISIPLP L P V + DG++ YD+R + L WS+ L+D
Sbjct: 395 ETY-VNIEYE-ASEMFDLHNVVISIPLPALREAPGVRQIDGEWRYDSRNSVLEWSIILVD 452
Query: 247 SSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKI 284
SN+SG+LEF+ P+A S FFP+ V FS + +++++K+
Sbjct: 453 QSNRSGSLEFTVPAADPSTFFPISVGFSASNTFSDLKV 490
Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 75/86 (87%), Gaps = 3/86 (3%)
Query: 54 AIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTS 113
A+VSRQFV+M+R RI+GLLAAFPKL+ SGKQHT+VET++VRYVYQP+E LY+LLIT K S
Sbjct: 15 ALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQPIEALYLLLITNKQS 74
Query: 114 NILEDLETLRLFSRVT---HPNVDKE 136
NILEDL+TLRL S++ P++D+E
Sbjct: 75 NILEDLDTLRLLSKLIPEYAPSLDEE 100
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 16/109 (14%)
Query: 267 FPLQV----SFSCNQSYANIKIFIEKLFLLHCT------------PNVTECDGDYNYDAR 310
PL V S S N++Y NI+ ++F LH P V + DG++ YD+R
Sbjct: 381 LPLAVNCWPSVSGNETYVNIEYEASEMFDLHNVVISIPLPALREAPGVRQIDGEWRYDSR 440
Query: 311 KNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIK 359
+ L WS+ L+D SN+SG+LEF+ P+A S FFP+ V FS + +++++K
Sbjct: 441 NSVLEWSIILVDQSNRSGSLEFTVPAADPSTFFPISVGFSASNTFSDLK 489
Score = 35.4 bits (80), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 9 MDENEVTDNAFSLIFAFDEIVALGYRESVNLAQ 41
+DE V AF L+FAF E ++LG +E+V +AQ
Sbjct: 97 LDEEGVCKAAFELLFAFIEAISLGNKENVTVAQ 129
>sp|Q0DJ99|COPD2_ORYSJ Coatomer subunit delta-2 OS=Oryza sativa subsp. japonica
GN=Os05g0311000 PE=2 SV=1
Length = 523
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 110/158 (69%), Gaps = 4/158 (2%)
Query: 129 THPNVDKELFKSKTEIGLKNPSKPFPLN-NDIGVLKWRFTSTDESCLPLSINCWPSDNGS 187
THPN++K+LF S+ +G K+P++PFP N+ ++KWR DES LPLS+NCWPS +G+
Sbjct: 340 THPNINKDLFNSQQVVGAKDPNRPFPSGQNETPLVKWRIHGMDESSLPLSVNCWPSVSGN 399
Query: 188 GGCDVNIEYELEHEEKELNQVTISIPLP-LHCTPNVTECDGDYNYDARKNTLTWSLALID 246
VNIEYE E +L+ V ISIPLP L P+V + DG++ YD+R + L WS+ LID
Sbjct: 400 E-TYVNIEYE-AAEMFDLHNVVISIPLPALREAPSVRQIDGEWRYDSRNSVLEWSILLID 457
Query: 247 SSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKI 284
SN+SG++EF P A S FFP+ + FS + +++++K+
Sbjct: 458 QSNRSGSMEFVVPPADPSTFFPISIGFSASSTFSDLKV 495
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 75/86 (87%), Gaps = 3/86 (3%)
Query: 54 AIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTS 113
A+VSRQFV+M+R RIEGLLAAFPKL+ +GKQHT+VET++VRYVYQP+E LY+LLIT K S
Sbjct: 15 ALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEGLYLLLITNKQS 74
Query: 114 NILEDLETLRLFSRVT---HPNVDKE 136
NILEDL+TLRL S++ P++D+E
Sbjct: 75 NILEDLDTLRLLSKLVPEYSPSLDEE 100
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 16/109 (14%)
Query: 267 FPLQV----SFSCNQSYANIKIFIEKLFLLHCT------------PNVTECDGDYNYDAR 310
PL V S S N++Y NI+ ++F LH P+V + DG++ YD+R
Sbjct: 386 LPLSVNCWPSVSGNETYVNIEYEAAEMFDLHNVVISIPLPALREAPSVRQIDGEWRYDSR 445
Query: 311 KNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIK 359
+ L WS+ LID SN+SG++EF P A S FFP+ + FS + +++++K
Sbjct: 446 NSVLEWSILLIDQSNRSGSMEFVVPPADPSTFFPISIGFSASSTFSDLK 494
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 9 MDENEVTDNAFSLIFAFDEIVALGYRESVNLAQ 41
+DE V AF LIFAFDE + LG +E+V + Q
Sbjct: 97 LDEEGVCKTAFELIFAFDEAICLGNKENVTVQQ 129
>sp|Q93Y22|COPD_ARATH Coatomer subunit delta OS=Arabidopsis thaliana GN=At5g05010 PE=1
SV=2
Length = 527
Score = 151 bits (381), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 106/160 (66%), Gaps = 6/160 (3%)
Query: 129 THPNVDKELFKSKTEIGLKNPSKPFPLN---NDIGVLKWRFTSTDESCLPLSINCWPSDN 185
THPN+++++F ++ +GLK P +PFP + +G+L+WR DES +PL+INCWPS +
Sbjct: 340 THPNINRDMFNNENILGLKRPDQPFPTGQGGDGVGLLRWRMQRADESMVPLTINCWPSVS 399
Query: 186 GSGGCDVNIEYELEHEEKELNQVTISIPLP-LHCTPNVTECDGDYNYDARKNTLTWSLAL 244
G+ V++EYE +L V IS+PLP L P+V +CDG++ YD R + L WS+ L
Sbjct: 400 GNE-TYVSLEYE-ASSMFDLTNVIISVPLPALREAPSVRQCDGEWRYDPRNSVLEWSILL 457
Query: 245 IDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKI 284
ID+SN+SG++EF P S FFP+ V F+ +Y+ +K+
Sbjct: 458 IDNSNRSGSMEFVVPPVDSSVFFPISVQFAATSTYSGLKV 497
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Query: 43 ATKIKLKNIKIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEK 102
A I +K+ K+ IVSR +V+M+R RIEGLLAAFPKL+ GKQHT++ET++VRYVYQP+E
Sbjct: 5 AAAIVVKSGKV-IVSRHYVDMSRIRIEGLLAAFPKLVGMGKQHTYIETENVRYVYQPIEA 63
Query: 103 LYMLLITTKTSNILEDLETLRLFSRVT 129
L++LL+TTK SNILEDL TL L S++
Sbjct: 64 LFLLLVTTKQSNILEDLATLTLLSKLV 90
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 27/33 (81%)
Query: 9 MDENEVTDNAFSLIFAFDEIVALGYRESVNLAQ 41
+DE ++ +F LIFAFDE+++LG++ESV +AQ
Sbjct: 97 LDEEGISRASFELIFAFDEVISLGHKESVTVAQ 129
>sp|Q0J649|COPD4_ORYSJ Coatomer subunit delta-4 OS=Oryza sativa subsp. japonica
GN=Os08g0368000 PE=2 SV=1
Length = 376
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 119/186 (63%), Gaps = 6/186 (3%)
Query: 103 LYMLLITTKTSNILEDLETLRL--FSRVTHPNVDKELFKSKTEIGLKNPSKPFPLN-NDI 159
L +L++ IL +E+ + S THPN++K+LF S+ +G K+P +PFP N+
Sbjct: 164 LALLVLNDADGLILLQIESQDIPGLSFKTHPNINKDLFNSQQILGAKDPIRPFPSGQNET 223
Query: 160 GVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEHEEKELNQVTISIPLP-LHC 218
++KWR +ES LPLS+NCWPS G+ VNIEYE E +L+ V ISIPLP L
Sbjct: 224 PLVKWRIQGMNESSLPLSVNCWPSILGNE-TYVNIEYE-ASEMFDLHSVIISIPLPALRE 281
Query: 219 TPNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQS 278
P V + DG++ YD+R + L WS+ LID SN+SG++EF P A S F+P+ V FS + +
Sbjct: 282 APRVRQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFVVPPADPSMFYPISVGFSASNT 341
Query: 279 YANIKI 284
++N+K+
Sbjct: 342 FSNVKV 347
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 16/109 (14%)
Query: 267 FPLQV----SFSCNQSYANIKIFIEKLFLLHCT------------PNVTECDGDYNYDAR 310
PL V S N++Y NI+ ++F LH P V + DG++ YD+R
Sbjct: 238 LPLSVNCWPSILGNETYVNIEYEASEMFDLHSVIISIPLPALREAPRVRQIDGEWKYDSR 297
Query: 311 KNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIK 359
+ L WS+ LID SN+SG++EF P A S F+P+ V FS + +++N+K
Sbjct: 298 NSVLEWSIILIDQSNRSGSMEFVVPPADPSMFYPISVGFSASNTFSNVK 346
>sp|Q55EZ6|COPD_DICDI Coatomer subunit delta OS=Dictyostelium discoideum GN=copd PE=3
SV=1
Length = 540
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 97/168 (57%), Gaps = 9/168 (5%)
Query: 123 RLFSRVTHPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWP 182
+ F +THPN+DK LF ++ + L++ K FP G+LKWR + ES +P+ +NCWP
Sbjct: 357 KQFQFITHPNIDKALFGEQSVLRLRDGGKGFPSG---GILKWRCKTNQESMMPIRVNCWP 413
Query: 183 SDNGSGGCDVNIEYELEHEEKELNQVTISIPLPLHCTPNVTECDGDYNYDARKNTLTWSL 242
S G VN+EY+ EL V I IP P P + + DG Y YD ++ + W +
Sbjct: 414 SP-GRDSTTVNLEYD-SLVGYELKSVFIVIPNPTSNAPIINQFDGLYEYDNKQKCVIWKI 471
Query: 243 ALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANI---KIFIE 287
LID SN+ G++EFS +QS FFP+++ F+ +Q+ + +F+E
Sbjct: 472 PLIDDSNRQGSMEFSVKGNTQS-FFPVKIQFTASQTICDTTVGSVFVE 518
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 72/86 (83%), Gaps = 1/86 (1%)
Query: 43 ATKIKLKNIKIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEK 102
A I KN K A++SRQF EMT++R+EGLLAAFPKL+ G+QHTF+ET+++RYVYQPLE
Sbjct: 5 AAAICTKNGK-ALLSRQFSEMTKSRVEGLLAAFPKLIGLGRQHTFIETENIRYVYQPLES 63
Query: 103 LYMLLITTKTSNILEDLETLRLFSRV 128
LY++LIT K SNILEDLETL L +++
Sbjct: 64 LYIVLITNKNSNILEDLETLHLLAKL 89
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 296 PNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQS 354
P + + DG Y YD ++ + W + LID SN+ G++EFS +QS FFP+++ F+ +Q+
Sbjct: 449 PIINQFDGLYEYDNKQKCVIWKIPLIDDSNRQGSMEFSVKGNTQS-FFPVKIQFTASQT 506
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 17/81 (20%)
Query: 10 DENEVTDNAFSLIFAFDEIVALGYRESVNLAQ----------------EATKIKLKNIKI 53
DE +++ NAF LIF FDE++A+GY+E V L Q KIK K +I
Sbjct: 97 DEYDISKNAFELIFTFDEVIAMGYKERVTLQQIKHFISMESHEEERFRMEEKIKQKEAQI 156
Query: 54 AIVSRQFVEMTRARIEGLLAA 74
+ S + E+ R R E +L
Sbjct: 157 -LASSKAKEIERMRHEEMLRG 176
>sp|O74496|COPD_SCHPO Coatomer subunit delta OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ret2 PE=3 SV=1
Length = 240
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 62/75 (82%)
Query: 54 AIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTS 113
AI+SRQF EM+R R+E LL++FP L+S Q+T VE+D+VR+VYQPL++LY++LIT S
Sbjct: 15 AIISRQFREMSRVRVESLLSSFPALVSEKSQNTTVESDNVRFVYQPLDELYIVLITNLQS 74
Query: 114 NILEDLETLRLFSRV 128
NIL+D++TL L S+V
Sbjct: 75 NILQDIDTLHLLSQV 89
Score = 38.1 bits (87), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 4/63 (6%)
Query: 9 MDENEVTDNAFSLIFAFDEIVALGYRESVNLAQEATKIKLKNI--KIA-IVSR-QFVEMT 64
++E E+ + AF + AFDE +LGYR++V+L Q T +++++ KI IVSR + +E T
Sbjct: 97 LEEREILEYAFEIFTAFDEATSLGYRDNVSLTQIKTYLEMESHEEKIQEIVSRNKEIEAT 156
Query: 65 RAR 67
R
Sbjct: 157 EER 159
>sp|P43621|COPD_YEAST Coatomer subunit delta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RET2 PE=1 SV=3
Length = 546
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 86/159 (54%), Gaps = 13/159 (8%)
Query: 125 FSRVTHPNVDKELFKSKTEIGLKNPSKPFPLNND-IGVLKWRFT--STDESCLPLSINCW 181
F THPN+DK+ F S I L++ SK FP N+ +GVL+WR + D+S +PL++ W
Sbjct: 345 FQFKTHPNIDKQSFLSTKLISLRDKSKAFPANDQSLGVLRWRKVAPAEDDSLIPLTLTTW 404
Query: 182 PSDNGS-GGCDVNIEYELEHEEKELNQVTISIPL----PLHCTPNVTEC-DGD-YNYDAR 234
S + S G DV IEYE E EL V +IP+ P+ + C D + N D
Sbjct: 405 VSPSESQQGFDVIIEYE-SVLETELADVIFTIPVFPQEPVDINTESSTCSDAEVVNMDQE 463
Query: 235 KNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSF 273
T + ++ I ++N +GAL F+ + + +P+ VSF
Sbjct: 464 MGT-SIKISKI-AANDAGALAFTIEAPYEDALYPMTVSF 500
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 62/95 (65%), Gaps = 5/95 (5%)
Query: 55 IVSRQFVEMTRARIEGLLAAFPKLMSS-GKQHTFVETDSVRYVYQPLEKLYMLLITTKTS 113
++SRQF ++++ R+ LL+ F L+S HTFVE VRYVY+P + Y++LIT + S
Sbjct: 16 LLSRQFKDLSKDRVLELLSNFQNLVSEISSDHTFVEDKHVRYVYRPFDNYYIILITNRQS 75
Query: 114 NILEDLETLRLFSRVTHPNV----DKELFKSKTEI 144
NI++DL TL LFS+ + + D+E+F + EI
Sbjct: 76 NIIKDLATLNLFSQTINSYLSSFQDQEIFHNAFEI 110
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 8 FMDENEVTDNAFSLIFAFDEIVAL-GYRESVNLAQEATKIKLKN----IKIAIVSRQFVE 62
F D+ E+ NAF ++ +FDEIV++ GY+E+++ Q T + +++ I+ I + +E
Sbjct: 98 FQDQ-EIFHNAFEILSSFDEIVSMGGYKENLSFTQVQTYLSMESHEERIQEIIERNKEIE 156
Query: 63 MTRAR 67
T R
Sbjct: 157 ATEER 161
>sp|B1WB39|HAS1_XENTR Hyaluronan synthase 1 OS=Xenopus tropicalis GN=has1 PE=2 SV=1
Length = 590
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 91 DSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVTHP-NVDKELFKSKTEIGLKN- 148
DS RYV P +KL ++L+ N +D + +F V H +V ++K G+K
Sbjct: 121 DSCRYVKYPKDKLKIILVI--DGNTEDDAYMMEMFKDVFHGDDVGTYVWKGNYHTGVKET 178
Query: 149 -----PSKPFPLNNDIGV 161
P PLN D G+
Sbjct: 179 QDGSCPEVSKPLNEDEGI 196
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,842,996
Number of Sequences: 539616
Number of extensions: 5360494
Number of successful extensions: 11606
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 11504
Number of HSP's gapped (non-prelim): 66
length of query: 359
length of database: 191,569,459
effective HSP length: 119
effective length of query: 240
effective length of database: 127,355,155
effective search space: 30565237200
effective search space used: 30565237200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)