Query psy16332
Match_columns 359
No_of_seqs 231 out of 574
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 18:41:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2635|consensus 100.0 5.6E-69 1.2E-73 520.9 28.0 248 36-290 1-490 (512)
2 KOG0937|consensus 100.0 2.2E-33 4.7E-38 275.4 24.9 292 41-350 1-382 (424)
3 KOG0938|consensus 100.0 1.2E-32 2.7E-37 260.6 23.3 296 40-351 1-406 (446)
4 KOG2635|consensus 99.9 1.9E-21 4.1E-26 190.1 16.9 177 177-358 284-482 (512)
5 PF00928 Adap_comp_sub: Adapto 99.9 2E-21 4.3E-26 183.7 13.6 171 129-307 76-260 (262)
6 KOG2740|consensus 99.8 3.5E-17 7.6E-22 157.1 17.5 236 42-287 3-392 (418)
7 KOG0937|consensus 99.7 5.1E-17 1.1E-21 160.3 15.9 166 129-307 237-422 (424)
8 KOG0938|consensus 99.6 5.6E-15 1.2E-19 141.0 15.3 152 129-290 261-422 (446)
9 PF00928 Adap_comp_sub: Adapto 99.5 9.7E-14 2.1E-18 131.3 15.1 182 164-356 3-226 (262)
10 PF01217 Clat_adaptor_s: Clath 99.4 2.8E-12 6.1E-17 110.8 11.5 88 40-128 1-90 (141)
11 KOG2677|consensus 97.9 8E-06 1.7E-10 84.3 3.4 173 129-312 664-892 (922)
12 PF10291 muHD: Muniscin C-term 97.5 0.0014 2.9E-08 62.6 11.5 125 159-287 90-227 (257)
13 KOG2740|consensus 97.1 0.011 2.4E-07 58.1 13.7 185 158-354 162-382 (418)
14 COG5030 APS2 Clathrin adaptor 96.3 0.027 5.8E-07 48.4 8.7 86 42-128 3-90 (152)
15 PF03164 Mon1: Trafficking pro 95.6 0.08 1.7E-06 53.9 10.2 77 44-124 14-97 (415)
16 PF10291 muHD: Muniscin C-term 93.4 2.4 5.3E-05 40.4 14.0 169 177-352 10-214 (257)
17 KOG0934|consensus 93.0 0.26 5.6E-06 42.4 5.7 77 45-128 6-90 (145)
18 KOG0936|consensus 89.9 1.6 3.5E-05 38.2 7.5 87 41-128 2-96 (182)
19 PF08923 MAPKK1_Int: Mitogen-a 89.6 3.6 7.8E-05 34.7 9.3 84 43-127 19-110 (119)
20 KOG0935|consensus 87.1 5.8 0.00013 33.5 8.8 84 44-128 5-91 (143)
21 KOG0997|consensus 69.0 34 0.00074 35.5 9.5 79 45-128 121-205 (523)
22 KOG3343|consensus 66.6 68 0.0015 28.6 9.5 95 42-138 10-111 (175)
23 PF03259 Robl_LC7: Roadblock/L 65.1 53 0.0011 25.0 8.1 63 45-108 19-90 (91)
24 PF03504 Chlam_OMP6: Chlamydia 55.6 76 0.0017 25.2 7.1 61 194-261 34-94 (95)
25 COG5122 TRS23 Transport protei 42.9 2E+02 0.0044 24.2 8.9 80 40-120 2-96 (134)
26 PF04312 DUF460: Protein of un 33.0 67 0.0015 27.8 4.1 29 43-72 44-72 (138)
27 PF14903 WG_beta_rep: WG conta 29.0 56 0.0012 20.3 2.3 19 45-64 2-20 (35)
28 KOG3432|consensus 28.9 20 0.00043 29.9 0.2 35 54-88 65-101 (121)
29 PF12182 DUF3642: Bacterial li 28.8 90 0.002 24.5 3.8 47 301-353 6-53 (79)
30 KOG2677|consensus 27.6 39 0.00084 36.4 2.0 60 294-353 788-856 (922)
31 PF04099 Sybindin: Sybindin-li 27.0 3.9E+02 0.0084 22.9 7.9 83 43-128 3-110 (142)
32 PF09550 DUF2376: Conserved hy 23.9 51 0.0011 22.8 1.5 17 61-77 27-43 (43)
33 PF07166 DUF1398: Protein of u 23.5 23 0.00051 30.1 -0.4 38 73-112 16-59 (125)
34 PF13774 Longin: Regulated-SNA 23.3 3.3E+02 0.0072 20.5 7.1 45 84-128 15-59 (83)
35 PF13598 DUF4139: Domain of un 23.0 3.9E+02 0.0086 25.6 8.1 54 193-247 245-302 (317)
36 TIGR01626 ytfJ_HI0045 conserve 20.2 1.3E+02 0.0028 27.3 3.7 35 42-79 148-183 (184)
No 1
>KOG2635|consensus
Probab=100.00 E-value=5.6e-69 Score=520.90 Aligned_cols=248 Identities=63% Similarity=1.027 Sum_probs=237.4
Q ss_pred eeeeeceeEEEeecCCceeEEeecccccchhHHHHHHhhhhhhhcCCCccceEEeCCEEEEEEEcCCEEEEEEecCCccH
Q psy16332 36 SVNLAQEATKIKLKNIKIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNI 115 (359)
Q Consensus 36 ~~~~~~s~~~i~~~~Gk~~LisRq~rdi~r~~ie~~l~~F~~li~~~~~~t~ve~~~vryvY~~~~~lYl~~iT~~nsNi 115 (359)
||+||| +||+++|| ++||||||||+|+|||+||++||+|+..++||||||+++|||||||+|+||++|||+|+|||
T Consensus 1 Mvvlaa---~i~t~~Gk-~ivsRqf~~Msr~RIEgLl~aFpkLv~~~~qhT~vEt~~VRYVYqP~d~lY~vLITtk~SNI 76 (512)
T KOG2635|consen 1 MVVLAA---SINTKTGK-AIVSRQFREMSRSRIEGLLAAFPKLVSAGKQHTFVETDSVRYVYQPLDNLYIVLITTKQSNI 76 (512)
T ss_pred CeEEEE---EEeecCCc-eeeehHhHhhhHHHHHHHHHHhHHhhccCCCccEEecccEEEEEEecccEEEEEEeccccch
Confidence 899999 99999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc-------------------------------------------------------------------
Q psy16332 116 LEDLETLRLFSRV------------------------------------------------------------------- 128 (359)
Q Consensus 116 ~~~l~~L~~l~~v------------------------------------------------------------------- 128 (359)
++||+|||+|+++
T Consensus 77 leDl~TL~Lfskvipey~~slde~eI~~~~FelifAFDEivsLGyre~v~laQikty~eMdSHEEKi~e~v~~nke~ea~ 156 (512)
T KOG2635|consen 77 LEDLETLRLFSKVIPEYCSSLDEKEILENAFELIFAFDEIVSLGYRENVNLAQIKTYLEMDSHEEKIHELVMRNKEREAK 156 (512)
T ss_pred hhHHHHHHHHHHhchhhhhhhhHHHHHHhhhhhhhccchhhhhcccccccHHHhhhhhccccHHHHHHHHHHHhhhHHHH
Confidence 9999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy16332 129 -------------------------------------------------------------------------------- 128 (359)
Q Consensus 129 -------------------------------------------------------------------------------- 128 (359)
T Consensus 157 q~mkrKaKElqr~r~ea~rrgg~~~~~~~~~~s~g~~~~s~~~~~~~~~~~~~~~~~~sa~~~~s~pak~mklG~k~~~s 236 (512)
T KOG2635|consen 157 QEMKRKAKELQRARKEAERRGGSLNPGFDAIGSSGYSSVSTTNAINRVESIAQKPKQQSAAKASSAPAKAMKLGKKTKNS 236 (512)
T ss_pred HHHHHHHHHHHHHHHhhhccccccCCCccccccccccCCcccchhhccccccccccccccccCCCCCchhhhhcccccch
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy16332 129 -------------------------------------------------------------------------------- 128 (359)
Q Consensus 129 -------------------------------------------------------------------------------- 128 (359)
T Consensus 237 ~~~~d~Lk~ege~ia~~~s~~g~~s~aap~~~~p~v~~e~v~i~ieEkln~~~~RDGgi~s~E~qG~lsLrI~d~e~~~i 316 (512)
T KOG2635|consen 237 DTFVDKLKGEGERIAGASSAIGSASSAAPPPTAPDVPEESVHIVIEEKLNVRLSRDGGIKSGEVQGTLSLRIKDEEYGDI 316 (512)
T ss_pred hhHHHHhhccccccccccccccccccCCCCCCCCCCccceEEEEEeeeEeEEEcccCCccceeeeeeEEEEEccccccce
Confidence
Q ss_pred ---------------cCcccchhhhccccEEEecCCCCCCCCCCCeeeEEEeecCCCCcccceEEEEeeCCCCCCceEEE
Q psy16332 129 ---------------THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVN 193 (359)
Q Consensus 129 ---------------tHP~VdK~~f~~~~ii~~k~~~k~Fp~~~~~gvlkWR~~~~~e~~lPlsV~~w~s~~~~~~~~v~ 193 (359)
||||+||+.|.++++|++|+|+|+||+|+.+|+||||+...+++++||++|||||++++| ++|+
T Consensus 317 ~lkl~n~~~~g~q~ktHPNlDK~~f~s~s~iglk~~~K~FPvn~~VGvLkWR~~~~des~iPlTincWPSes~~g-~dV~ 395 (512)
T KOG2635|consen 317 ELKLANGRDKGTQLKTHPNLDKKVFLSSSLIGLKRPEKPFPVNSDVGVLKWRMVDEDESEIPLTINCWPSESGNG-YDVN 395 (512)
T ss_pred EEEEcCCCCcceeeeeCCCcchhhhccccccccccCCCCCCcCCcceEEEEeecccccccCceEEEeccccCCCC-eEEE
Confidence 899999999999999999999999999999999999999999999999999999999965 9999
Q ss_pred EEEEEecCccceeeeEEEeeCCCCCCCceeeCCceEEEeCCCCeEEEEEeeecCCCceeEEEEEeecCCCCCcccEEEEE
Q psy16332 194 IEYELEHEEKELNQVTISIPLPLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSF 273 (359)
Q Consensus 194 iEye~~~~~~~l~dV~i~IPlp~~~~~~v~~~dG~~~~d~~~~~L~W~I~~id~~~~sgsleFsv~~~d~d~~fPI~V~F 273 (359)
||||+. ...+|+||.|.||||....|.+.++||+|.|+++..++.|+|+.| .+|.+|++||+|++.+.++|||++|.|
T Consensus 396 iEYe~~-~~~eL~dV~i~iPlP~~iapsv~~~Dge~~~~~~~~~leW~I~~I-a~N~SGslEFs~~~~~~~~fFPl~VsF 473 (512)
T KOG2635|consen 396 IEYEAV-LECELNDVIITIPLPANIAPSVGECDGEYRYDERKNVLEWSIGVI-AKNFSGSLEFSCPASDPDGFFPLSVSF 473 (512)
T ss_pred EEEeeh-hcccccceEEEeecccccCCccceecceEEeccccceeEEEeeee-ccCCCCcEEEeecCCCCCceeeEEEEE
Confidence 999994 337899999999999877999999999999999999999999999 459999999999999999999999999
Q ss_pred EeccceeeeEEEEeecc
Q psy16332 274 SCNQSYANIKIFIEKLF 290 (359)
Q Consensus 274 ~~~~s~s~v~V~iP~~~ 290 (359)
.+...++++.|.--+..
T Consensus 474 ~s~~~ftgl~vqkVv~~ 490 (512)
T KOG2635|consen 474 TSDTVFTGLFVQKVVRN 490 (512)
T ss_pred EecccccceEEEEEEEc
Confidence 99999999999766544
No 2
>KOG0937|consensus
Probab=100.00 E-value=2.2e-33 Score=275.41 Aligned_cols=292 Identities=19% Similarity=0.288 Sum_probs=243.7
Q ss_pred ceeEEEeecCCceeEEeeccc-ccchhHHHHHHhhhhhhh-c---CCCccceEEeCCEEEEEEEcCCEEEEEEecCCccH
Q psy16332 41 QEATKIKLKNIKIAIVSRQFV-EMTRARIEGLLAAFPKLM-S---SGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNI 115 (359)
Q Consensus 41 ~s~~~i~~~~Gk~~LisRq~r-di~r~~ie~~l~~F~~li-~---~~~~~t~ve~~~vryvY~~~~~lYl~~iT~~nsNi 115 (359)
+||++|+|.+|+ +|+||+|| |++++.+| .|.+++ . .+...|++++++++|+|.+|++||+++.|+.|.|+
T Consensus 1 ~sa~fild~~G~-~lisr~yr~dv~~s~~~----~F~~~l~~~e~~~~~~p~l~~~g~~~~~ik~s~lylv~~~~~n~~a 75 (424)
T KOG0937|consen 1 ASAVFILDHKGE-VLISRDYRGDVPMSSTE----KFFRKLFEKEEGDESPPFLVHDGSRFIHIKHSNLYLVAGTRPNVSA 75 (424)
T ss_pred CceEEEEcCCCc-EeEeecccccCChhhhh----hHHHHHhhhcccCCCCCeEEeCCceEEEEeecceEEEEEeccCCCH
Confidence 489999999999 99999999 99999999 666443 3 24466999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc-----------------------------------cCcccchhhhccccEEEecCCCCCCCCCCCee
Q psy16332 116 LEDLETLRLFSRV-----------------------------------THPNVDKELFKSKTEIGLKNPSKPFPLNNDIG 160 (359)
Q Consensus 116 ~~~l~~L~~l~~v-----------------------------------tHP~VdK~~f~~~~ii~~k~~~k~Fp~~~~~g 160 (359)
+..+++|+++++| |.+.+.+++++++.- .+.+.+. -|+-+.+.
T Consensus 76 ~~v~~~l~~~~~v~~~y~~~l~e~si~~n~vlvyElLde~mDFGypQ~t~s~iL~~yi~~~~~-~l~~~~~-~~p~avtn 153 (424)
T KOG0937|consen 76 ALVLSFLYAVADVFGDYLSELEEESIRDNFVLVYELLDEVMDFGYPQTTDSEILKNYITQKAN-RLQDAQP-RPPLAVTN 153 (424)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccceecchHHHHHHHHHHhccCCcccchHHHHHHHhccccc-ceeecCC-CCCccccc
Confidence 9999999999999 788899999977721 1222111 25667888
Q ss_pred eEEEeecCC----CCcccce--EEEEeeCCCCCC-ceEEEEEEEEec---------------------------Ccccee
Q psy16332 161 VLKWRFTST----DESCLPL--SINCWPSDNGSG-GCDVNIEYELEH---------------------------EEKELN 206 (359)
Q Consensus 161 vlkWR~~~~----~e~~lPl--sV~~w~s~~~~~-~~~v~iEye~~~---------------------------~~~~l~ 206 (359)
..+||..+. ||++|++ +|++..+.+|.. ..+|.+++.++. ..+.++
T Consensus 154 avsWrs~gi~~~KnevflDViE~Vs~l~~~~G~vl~s~i~G~I~~k~~LsGmPelrl~ln~~~~~~~~~~~~~s~~v~le 233 (424)
T KOG0937|consen 154 AVSWRSEGIYYGKNEVFLDVIESVSLLYDSNGIVLLSEIVGTIKLKCYLSGMPELRLGLNDKVLFDKQGPRSKSKGVELE 233 (424)
T ss_pred ceeecccccccccceEEEEhhhhhhHhhhcCCcEEEeeeeeEEEEEEEcCCCceeeeecCcccccccccccccCcceEee
Confidence 899998664 9999999 999888877743 688888888744 013689
Q ss_pred eeEE--EeeCCC-CCCCce--eeCCceEE-----EeCCCCeEEEEEeeecCCCceeEEEEEeecCCCCCcccEEEEEEec
Q psy16332 207 QVTI--SIPLPL-HCTPNV--TECDGDYN-----YDARKNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCN 276 (359)
Q Consensus 207 dV~i--~IPlp~-~~~~~v--~~~dG~~~-----~d~~~~~L~W~I~~id~~~~sgsleFsv~~~d~d~~fPI~V~F~~~ 276 (359)
|+++ |+.+++ ++..+| +++||+|+ .....++++|--..+.. ..++++++.++.. -+|+.+
T Consensus 234 di~fh~~v~l~~fd~dr~i~FiPPdGeF~Lm~Y~ls~~vkPli~~~~~~~~-~~~~ri~i~~K~~---------~~fk~~ 303 (424)
T KOG0937|consen 234 DIKFHECVRLSRFDNDRTISFIPPDGEFELMRYRLSTHVKPLIWFYQLIEE-HSRSRIEVMVKLR---------EQFKSR 303 (424)
T ss_pred ecccceeechhhccCCceEEecCCCCceEEEEEEecCCCCCeEEeeeeeee-ccceeEEEEEech---------hhcCCc
Confidence 9999 999998 555555 89999986 35566899997655544 7789999999876 589999
Q ss_pred cceeeeEEEEeecccccCCCceeeecceEEEeCCCCEEEEEEeeEcCCC-CeEEEEEEccC-CCC----CCccceEEEEe
Q psy16332 277 QSYANIKIFIEKLFLLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSN-KSGALEFSAPS-ASQ----SDFFPLQVSFS 350 (359)
Q Consensus 277 ~s~s~v~V~iP~~~~~~~~P~V~~~dG~y~y~~~~~~l~W~I~~i~~~~-~sgs~eF~~~~-~~~----~~fFPi~V~F~ 350 (359)
.++++++|.+|.|. ++..|.....-|..+|++++++|+|+|+.+.++. .+++++|.+|+ ..+ ...-|++|+|+
T Consensus 304 ~~a~~v~I~iP~P~-~a~~~~fk~s~G~~~~~~e~~~l~W~I~~~~gg~e~~~r~~~~lp~~~~e~~~~~~~~pi~v~Fe 382 (424)
T KOG0937|consen 304 SSANNVEICIPVPD-DASSPSFKTSLGSAKYDPEKSALRWTIKKFVGGKEYSLRARMDLPSEEHEEQCTEGLGPIKVKFE 382 (424)
T ss_pred cccceEEEEeeCCC-ccccceEeccCCceeeecccceEEEEeccccCCceEEEEEeecCCccccCCCCcccCCceEEEEE
Confidence 99999999999998 6889999998999999999999999999998877 99999999998 332 45999999997
No 3
>KOG0938|consensus
Probab=100.00 E-value=1.2e-32 Score=260.56 Aligned_cols=296 Identities=16% Similarity=0.245 Sum_probs=237.1
Q ss_pred eceeEEEeecCCceeEEeeccc-ccchhHHHHHHhhhhhhhcC--CCccceEEeCCEEEEEEEcCCEEEEEEecCCccHH
Q psy16332 40 AQEATKIKLKNIKIAIVSRQFV-EMTRARIEGLLAAFPKLMSS--GKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNIL 116 (359)
Q Consensus 40 ~~s~~~i~~~~Gk~~LisRq~r-di~r~~ie~~l~~F~~li~~--~~~~t~ve~~~vryvY~~~~~lYl~~iT~~nsNi~ 116 (359)
|+|+++|.+.+|. .||+|-|| |+.|+.+| .|.-.+.+ ...||+...++.+|.|.+++|||+++||+.|.|++
T Consensus 1 misglfi~n~rGe-vlink~fr~dlkrs~~d----iFRv~vi~n~d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva 75 (446)
T KOG0938|consen 1 MISGLFIYNLRGE-VLINKTFRDDLKRSIVD----IFRVQVINNLDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVA 75 (446)
T ss_pred CcceEEEEeccCc-EEEehhhhhhhhhhHHH----HHHHhhhhccccCCCeeEecceeEEEEeeccEEEEEEecCCCchh
Confidence 6799999999999 99999999 99999888 99988876 34679999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc-----------------------------------cCcccchhhhccccEEEe----cCCCCC-----
Q psy16332 117 EDLETLRLFSRV-----------------------------------THPNVDKELFKSKTEIGL----KNPSKP----- 152 (359)
Q Consensus 117 ~~l~~L~~l~~v-----------------------------------tHP~VdK~~f~~~~ii~~----k~~~k~----- 152 (359)
..++||++++++ ++|+..|...+++++-+. .+.+++
T Consensus 76 ~v~eFl~kl~avm~aYfgk~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~~~is~~~Vrs~g~~ls~k~s~~sq~~ 155 (446)
T KOG0938|consen 76 AVFEFLYKLDAVMNAYFGKDREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALKAQISQKGVRSMGGVLSSKSSPTSQAT 155 (446)
T ss_pred hHHHHHHHHHHHHHHHhcccchhhhhhceEeHHHHHHHHHhcCCCccCChhHHHhhhhhhhhhccccccCCcCCCCcccc
Confidence 999999999999 899999999988877664 222221
Q ss_pred -CCCCCCeeeEEEeecCC----CCcccce--EEEEeeCCCCCC-ceEEEEEEEEec------------------------
Q psy16332 153 -FPLNNDIGVLKWRFTST----DESCLPL--SINCWPSDNGSG-GCDVNIEYELEH------------------------ 200 (359)
Q Consensus 153 -Fp~~~~~gvlkWR~~~~----~e~~lPl--sV~~w~s~~~~~-~~~v~iEye~~~------------------------ 200 (359)
-...|.+|.+.||..++ ||++|++ .+|.++|..|.. +++|++.+.++.
T Consensus 156 ~~~ssqv~G~i~WRr~Gi~ykknevfldvvErvNlLmS~~GnVLrs~VsG~V~mk~~LSGmPeckfGlNDkl~~e~kq~e 235 (446)
T KOG0938|consen 156 ELRSSQVTGKIGWRREGIKYKKNEVFLDVVERVNLLMSSDGNVLRSDVSGTVDMKTHLSGMPECKFGLNDKLGMESKQSE 235 (446)
T ss_pred cccccccccccccccccceeccceeEeEehheeeeEEcCCCCEEEeecccEEEEEEeccCCcccccccCcccceeecccc
Confidence 22246789999999996 9999999 999999999865 899998887633
Q ss_pred ----------------CccceeeeEE--EeeCCC-CCCC--ceeeCCceEEE---e-CCCCeEEEEE-eeecCCCceeEE
Q psy16332 201 ----------------EEKELNQVTI--SIPLPL-HCTP--NVTECDGDYNY---D-ARKNTLTWSL-ALIDSSNKSGAL 254 (359)
Q Consensus 201 ----------------~~~~l~dV~i--~IPlp~-~~~~--~v~~~dG~~~~---d-~~~~~L~W~I-~~id~~~~sgsl 254 (359)
.++.|+|++| ||.|++ .+.. .+.|+||++++ - .+.-.|-.++ +.+.+ -....+
T Consensus 236 sks~~~n~~~~sks~~g~v~leDc~FHqCV~L~kFn~eh~IsFvPPDGe~ELMkYr~~enInlPFrV~PiV~e-l~r~ki 314 (446)
T KOG0938|consen 236 SKSDFGNKNFPSKSGKGSVLLEDCTFHQCVRLDKFNSEHIISFVPPDGEFELMKYRVTENINLPFRVTPIVTE-LGRTKI 314 (446)
T ss_pred ccccccccCCCcccCCceEEeeccchheeeccccccccceEEEeCCCCceEeEeeeeccCcccceEeeeheec-ccceeE
Confidence 1246999999 999999 5544 44999999983 1 1222344454 55543 223556
Q ss_pred EEEeecCCCCCcccEEEEEEeccceeeeEEEEeecccccCCCceeeecceEEEeCCCCEEEEEEeeEcCCC-CeEEEEEE
Q psy16332 255 EFSAPSASQSDFFPLQVSFSCNQSYANIKIFIEKLFLLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSN-KSGALEFS 333 (359)
Q Consensus 255 eFsv~~~d~d~~fPI~V~F~~~~s~s~v~V~iP~~~~~~~~P~V~~~dG~y~y~~~~~~l~W~I~~i~~~~-~sgs~eF~ 333 (359)
+..+... ..|.....+.+|.+.||+|. ++...++....|..+|.|+.++++|+|+.+.|.. .+-|+|.+
T Consensus 315 e~ri~ik---------s~f~~kl~a~~v~~rIPvP~-ntv~~n~~v~~Gkaky~psen~ivWki~kf~G~tE~tlsAeve 384 (446)
T KOG0938|consen 315 EYRITIK---------SLFPPKLLAKDVVVRIPVPP-NTVKCNISVSNGKAKYVPSENAIVWKINKFNGLTESTLSAEVE 384 (446)
T ss_pred EEEEEEe---------ccCCchhhhcceEEEecCCC-ccccceeEEecCccccCcccceEEEEecccCCcccceeEEEEE
Confidence 6554332 35555677889999999988 6777777777899999999999999999999977 88899999
Q ss_pred ccC-C-CCC--CccceEEEEee
Q psy16332 334 APS-A-SQS--DFFPLQVSFSC 351 (359)
Q Consensus 334 ~~~-~-~~~--~fFPi~V~F~s 351 (359)
+-. . +.. +..||++.|+-
T Consensus 385 ls~Tt~nkq~WtrPPIsleFeV 406 (446)
T KOG0938|consen 385 LSDTTQNKQQWTRPPISLEFEV 406 (446)
T ss_pred eccCccccccccCCCceeEEee
Confidence 843 2 222 29999999973
No 4
>KOG2635|consensus
Probab=99.87 E-value=1.9e-21 Score=190.08 Aligned_cols=177 Identities=24% Similarity=0.456 Sum_probs=137.2
Q ss_pred EEEEeeCCCCCC-ceEEEEEEEEecCccceee----------eEEEeeCCCC-C------CC--ceeeCCceEEEeCCCC
Q psy16332 177 SINCWPSDNGSG-GCDVNIEYELEHEEKELNQ----------VTISIPLPLH-C------TP--NVTECDGDYNYDARKN 236 (359)
Q Consensus 177 sV~~w~s~~~~~-~~~v~iEye~~~~~~~l~d----------V~i~IPlp~~-~------~~--~v~~~dG~~~~d~~~~ 236 (359)
.++.-.+..|+- ++++.+.++++-.+-+.-+ .-+.+...+. + .. .+..++-.|-.+...+
T Consensus 284 kln~~~~RDGgi~s~E~qG~lsLrI~d~e~~~i~lkl~n~~~~g~q~ktHPNlDK~~f~s~s~iglk~~~K~FPvn~~VG 363 (512)
T KOG2635|consen 284 KLNVRLSRDGGIKSGEVQGTLSLRIKDEEYGDIELKLANGRDKGTQLKTHPNLDKKVFLSSSLIGLKRPEKPFPVNSDVG 363 (512)
T ss_pred eEeEEEcccCCccceeeeeeEEEEEccccccceEEEEcCCCCcceeeeeCCCcchhhhccccccccccCCCCCCcCCcce
Confidence 455666666632 6778777777543222222 2233333221 1 11 2244455566777889
Q ss_pred eEEEEEeeecCCCceeEEEEEeecCCCCCcccEEEEEEe--ccceeeeEEEEeecccccCCCceeeecceEEEeCCCCEE
Q psy16332 237 TLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSC--NQSYANIKIFIEKLFLLHCTPNVTECDGDYNYDARKNTL 314 (359)
Q Consensus 237 ~L~W~I~~id~~~~sgsleFsv~~~d~d~~fPI~V~F~~--~~s~s~v~V~iP~~~~~~~~P~V~~~dG~y~y~~~~~~l 314 (359)
+|+|+...-| .+..++.|+||..+...-+.|+++|+. +..+.+|.|.+|.|. +. .|.+.+|||.|.|+++++++
T Consensus 364 vLkWR~~~~d--es~iPlTincWPSes~~g~dV~iEYe~~~~~eL~dV~i~iPlP~-~i-apsv~~~Dge~~~~~~~~~l 439 (512)
T KOG2635|consen 364 VLKWRMVDED--ESEIPLTINCWPSESGNGYDVNIEYEAVLECELNDVIITIPLPA-NI-APSVGECDGEYRYDERKNVL 439 (512)
T ss_pred EEEEeecccc--cccCceEEEeccccCCCCeEEEEEEeehhcccccceEEEeeccc-cc-CCccceecceEEecccccee
Confidence 9999976644 467899999998877666999999998 678999999999877 44 99999999999999999999
Q ss_pred EEEEeeEcCCCCeEEEEEEccCCCCCCccceEEEEeeceecccc
Q psy16332 315 TWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANI 358 (359)
Q Consensus 315 ~W~I~~i~~~~~sgs~eF~~~~~~~~~fFPi~V~F~s~~~~~~~ 358 (359)
.|+|+.| +.|.+|++||+||++++++||||+|+|+++.+|+++
T Consensus 440 eW~I~~I-a~N~SGslEFs~~~~~~~~fFPl~VsF~s~~~ftgl 482 (512)
T KOG2635|consen 440 EWSIGVI-AKNFSGSLEFSCPASDPDGFFPLSVSFTSDTVFTGL 482 (512)
T ss_pred EEEeeee-ccCCCCcEEEeecCCCCCceeeEEEEEEecccccce
Confidence 9999999 999999999999999999999999999999999986
No 5
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents the C-terminal domain of the mu subunit from various clathrin adaptors (AP1, AP2 and AP3) []. The C-teminal domain has an immunoglobulin-like beta-sandwich fold consisting of 9 strands in 2 sheets with a Greek key topology, similar to that found in cytochrome f and certain transcription factors []. The mu subunit regulates the coupling of clathrin lattices with particular membrane proteins by self-phosphorylation via a mechanism that is still unclear []. The mu subunit possesses a highly conserved N-terminal domain of around 230 amino acids, which may be the region of interaction with other AP proteins; a linker region of between 10 and 42 amino acids; and a less well-conserved C-terminal domain of around 190 amino acids, which may be the site of specific interaction with the protein being transported in the vesicle []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1H6E_A 3L81_A 1W63_V 4EMZ_A 4EN2_A 2VGL_M 3ML6_F 2PR9_A 2JKT_M 1I31_A ....
Probab=99.86 E-value=2e-21 Score=183.74 Aligned_cols=171 Identities=35% Similarity=0.612 Sum_probs=123.0
Q ss_pred cCcccchhhhccccEEEecCCCCCCCCCCCeeeEEEeecCCCCcccceEEEEeeCCCCCCceEEEEEEEEecCc-cceee
Q psy16332 129 THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEHEE-KELNQ 207 (359)
Q Consensus 129 tHP~VdK~~f~~~~ii~~k~~~k~Fp~~~~~gvlkWR~~~~~e~~lPlsV~~w~s~~~~~~~~v~iEye~~~~~-~~l~d 207 (359)
+|||||++.|++++.|+|+||||.|++ |+||++.. ..+|+.++||+...++++.+++++++.+... ..++|
T Consensus 76 fH~cV~~~~~~~~~~i~f~PPdg~f~L------l~Yr~~~~--~~~P~~i~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 147 (262)
T PF00928_consen 76 FHPCVDLSKFESDRVISFIPPDGEFTL------LRYRVSSN--SPLPFKITCWVSEKSSGRFEVTIELESNFPNKISLEN 147 (262)
T ss_dssp EETTEECCCCCSHTEEEE---SEEEEE------EEEEEESS--S--SEEEEEEEEEETTTEEEEEEEEEE-S-TTSEEEE
T ss_pred eccccCccccccccceecCCCCceEEE------EEEEccCC--CCCCcEEEEEeccCCCceEEEEEEecccCCCCceece
Confidence 899999999999999999999999987 99999865 5689999999987555688999998875532 57999
Q ss_pred eEEEeeCCCC-CCCceeeCCceEEEeCCCCeEEEEEeeecCC---CceeEEEEEeecCCCC--CcccEEEEEEec-ccee
Q psy16332 208 VTISIPLPLH-CTPNVTECDGDYNYDARKNTLTWSLALIDSS---NKSGALEFSAPSASQS--DFFPLQVSFSCN-QSYA 280 (359)
Q Consensus 208 V~i~IPlp~~-~~~~v~~~dG~~~~d~~~~~L~W~I~~id~~---~~sgsleFsv~~~d~d--~~fPI~V~F~~~-~s~s 280 (359)
|.|+||+|+. ..+.+...+|+++|+...+.+.|+|+.++++ .-+|+++|.......+ .++||+|+|++. .+++
T Consensus 148 v~I~iplP~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~pi~v~F~~~~~~~S 227 (262)
T PF00928_consen 148 VVIRIPLPPGTSSPSIESSDGSAEYDEEENALVWKIKKLPGGSESTLSGTLEFSSPSSVPSDWSFFPISVEFTIPGYTLS 227 (262)
T ss_dssp EEEEEE--TTEEEEEEEESSSEEEEETGCTEEEEEEEEEETSEEEEEEEEEEEEEECCSS-S-----EEEEEEESTSETT
T ss_pred EEEEeecCCccccceeeecCceEEEEccCCEEEEEECCccCcccccEEEEEEecCCCcccccccceeEEEEEEeCCcccC
Confidence 9999999985 4788888999999999999999999999873 2257778876554333 699999999996 5688
Q ss_pred eeEEEEeeccc--ccCC--Cceeee--cceEEE
Q psy16332 281 NIKIFIEKLFL--LHCT--PNVTEC--DGDYNY 307 (359)
Q Consensus 281 ~v~V~iP~~~~--~~~~--P~V~~~--dG~y~y 307 (359)
|++|..-.... +... ..|++. .|+|++
T Consensus 228 gl~V~~l~v~~~~~~~~~~k~vky~t~s~~Y~i 260 (262)
T PF00928_consen 228 GLKVRSLDVVNEDENYKPYKWVKYVTKSGSYEI 260 (262)
T ss_dssp T-EEEEEEEE-SSCGGGSEEEEEEEEEEEEEEE
T ss_pred CCEEEEEEeEecCCCCCCcccEEEEEEcCcEEE
Confidence 88887643221 1222 355544 466654
No 6
>KOG2740|consensus
Probab=99.75 E-value=3.5e-17 Score=157.10 Aligned_cols=236 Identities=14% Similarity=0.231 Sum_probs=182.9
Q ss_pred eeEEEeecCCceeEEeeccc--ccchhHHHHHHhhhhhhhcCCCcc-ceEEeCCEEEEEEEcC-CEEEEEEecCCccHHH
Q psy16332 42 EATKIKLKNIKIAIVSRQFV--EMTRARIEGLLAAFPKLMSSGKQH-TFVETDSVRYVYQPLE-KLYMLLITTKTSNILE 117 (359)
Q Consensus 42 s~~~i~~~~Gk~~LisRq~r--di~r~~ie~~l~~F~~li~~~~~~-t~ve~~~vryvY~~~~-~lYl~~iT~~nsNi~~ 117 (359)
-++|+.|-+|+ .++..+++ -++|+-..-+++.|.+-.. ..| |.+-+..+.|.+|-++ ++|+++.++-.+=.+.
T Consensus 3 ~siflidtsg~-l~lek~~~g~t~~rsic~~f~e~~~~~~~--~e~~ppvi~~p~hylfsv~~~~i~~~~~st~e~pPL~ 79 (418)
T KOG2740|consen 3 LSIFLIDTSGD-LLLEKHLKGSTVVRSICDYFFEDQSSDDD--LEHVPPVISTPHHYLFSVYRDLIFFCAVSTVETPPLM 79 (418)
T ss_pred eEEEEEcCCch-hhhhHhhCCceeeeehHHHHHHhhhhccc--cccCCceecCCceeeeeeeccCcEEEEEEeccCCChh
Confidence 46699999999 99999999 6777766655555544432 233 5555555677777665 5889998888888999
Q ss_pred HHHHHHHhhhc---------------------------------------------------------------------
Q psy16332 118 DLETLRLFSRV--------------------------------------------------------------------- 128 (359)
Q Consensus 118 ~l~~L~~l~~v--------------------------------------------------------------------- 128 (359)
.++|||+.++|
T Consensus 80 ~iefL~rv~dv~~eyFg~~s~~~Ik~N~~vv~ell~emiDnGfpl~tE~NiLke~i~pps~l~~~~~svTg~~n~~~~lP 159 (418)
T KOG2740|consen 80 VIEFLHRVVDVLLEYFGGLSESKIKDNVVVVYELLDEMIDNGFPLVTEPNILKELIPPPSFLSKKFNSVTGNSNVSDTLP 159 (418)
T ss_pred HHHHHHHHHHHHHHHhcccCHhHhhcceeeHHHHHHHHHHcCCCcccChhHHHhhcCChHHHHHHHhhhhccccccccCC
Confidence 99999999999
Q ss_pred --------------------------------------------------------------------------cCcccc
Q psy16332 129 --------------------------------------------------------------------------THPNVD 134 (359)
Q Consensus 129 --------------------------------------------------------------------------tHP~Vd 134 (359)
+||||+
T Consensus 160 tg~~s~VPWR~~~~Ky~nNE~yvdvlEeidai~~k~gslv~~eI~g~vd~~~qLsgmPdltlsl~np~~L~dvsfHpcVr 239 (418)
T KOG2740|consen 160 TGALSNVPWRTAGVKYTNNEAYVDVLEEIDAIVDKKGSLVFGEIQGIVDVCSQLSGMPDLTLSLNNPRLLGDVSFHPCVR 239 (418)
T ss_pred CcccccccccccCcccccchhhhhhhheeheEecCCCCEEEEEEEEEEEEEEeecCCCceEEEccCccccCCccccccee
Confidence 899999
Q ss_pred hhhhccccEEEecCCCCCCCCCCCeeeEEEeecCCCCcccceEEEEeeCCCCCCc-eEEEEEEEEecC-ccceeeeEEEe
Q psy16332 135 KELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGG-CDVNIEYELEHE-EKELNQVTISI 212 (359)
Q Consensus 135 K~~f~~~~ii~~k~~~k~Fp~~~~~gvlkWR~~~~~e~~lPlsV~~w~s~~~~~~-~~v~iEye~~~~-~~~l~dV~i~I 212 (359)
.++|++.++|+|+||||.|.+ |+||+..++.+.+|+.|...++-.+ ++ +++.+.++.+.+ ...++-+++++
T Consensus 240 ~krwe~~~~lsFIPPDGkFrL------lsy~v~~~~~v~~pvyv~~~i~l~~-~~~~ri~~tvg~~~~~gK~ie~itVt~ 312 (418)
T KOG2740|consen 240 YKRWESHSVLSFIPPDGKFRL------LSYRVDAQNQVAIPVYVKNSISLDS-NHQGRISLTVGPKKKMGKTIELITVTV 312 (418)
T ss_pred ecccccccceEEcCCCCcEEE------EEEEEehhhccccceEEeeeeccCC-CceEEEEEeccccccccceeEeEEEEe
Confidence 999999999999999999998 9999999988899999999888665 33 444444433222 24677777788
Q ss_pred eCCCCC-CCceeeCCceEEEeCCCCeEEEEEeeecCC-Cc--eeEEEEEeecCCCCCcccEEEEEEec-cceeeeEEEEe
Q psy16332 213 PLPLHC-TPNVTECDGDYNYDARKNTLTWSLALIDSS-NK--SGALEFSAPSASQSDFFPLQVSFSCN-QSYANIKIFIE 287 (359)
Q Consensus 213 Plp~~~-~~~v~~~dG~~~~d~~~~~L~W~I~~id~~-~~--sgsleFsv~~~d~d~~fPI~V~F~~~-~s~s~v~V~iP 287 (359)
-.|... .....+..|+++.+...+.+.|.++.+..+ -+ .|.++.+-.......+..++++|++. .+++|+.|.-=
T Consensus 313 ~~pn~i~~~~k~~~~g~~~~~~~~k~l~W~~~~i~tg~lp~Lkg~~~~e~~~sk~~~l~t~~Lqykiqg~alsglkVe~L 392 (418)
T KOG2740|consen 313 QDPNEIAYASKILTHGTFTNSIIMKQLTWTFGSIATGKLPVLKGTINLEPGFSKKVDLPTLSLQYKIQGQALSGLKVERL 392 (418)
T ss_pred cCccceeeeecccccceeEeecccceeEEEeecccCCcccccccccccCCCCCccccCcccceeeeeeeeeccceEEEee
Confidence 888743 444466899999999899999999888653 22 57777764445557799999999985 78999988754
No 7
>KOG0937|consensus
Probab=99.73 E-value=5.1e-17 Score=160.31 Aligned_cols=166 Identities=23% Similarity=0.360 Sum_probs=131.4
Q ss_pred cCcccchhhhccccEEEecCCCCCCCCCCCeeeEEEeecCCCCcccceEEEEeeCCCCCCceEEEEEEEEec--Cc---c
Q psy16332 129 THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEH--EE---K 203 (359)
Q Consensus 129 tHP~VdK~~f~~~~ii~~k~~~k~Fp~~~~~gvlkWR~~~~~e~~lPlsV~~w~s~~~~~~~~v~iEye~~~--~~---~ 203 (359)
||+||+..+|+++++|+|+||||.|++ |+||+++.-+ |+ .|+....+.+.+..+|+.++. ++ .
T Consensus 237 fh~~v~l~~fd~dr~i~FiPPdGeF~L------m~Y~ls~~vk---Pl---i~~~~~~~~~~~~ri~i~~K~~~~fk~~~ 304 (424)
T KOG0937|consen 237 FHECVRLSRFDNDRTISFIPPDGEFEL------MRYRLSTHVK---PL---IWFYQLIEEHSRSRIEVMVKLREQFKSRS 304 (424)
T ss_pred cceeechhhccCCceEEecCCCCceEE------EEEEecCCCC---Ce---EEeeeeeeeccceeEEEEEechhhcCCcc
Confidence 999999999999999999999999988 9999998766 88 555544434445555555543 32 6
Q ss_pred ceeeeEEEeeCCC-CCCCceeeCCceEEEeCCCCeEEEEEeeecCC-CceeEEEEEeecC---C--CCCcccEEEEEEec
Q psy16332 204 ELNQVTISIPLPL-HCTPNVTECDGDYNYDARKNTLTWSLALIDSS-NKSGALEFSAPSA---S--QSDFFPLQVSFSCN 276 (359)
Q Consensus 204 ~l~dV~i~IPlp~-~~~~~v~~~dG~~~~d~~~~~L~W~I~~id~~-~~sgsleFsv~~~---d--~d~~fPI~V~F~~~ 276 (359)
++++|+|++|+|. ++.+.+...-|..+|+++.+.|+|+|+++.++ .-.++.++..++. + ..+..|++|.|++.
T Consensus 305 ~a~~v~I~iP~P~~a~~~~fk~s~G~~~~~~e~~~l~W~I~~~~gg~e~~~r~~~~lp~~~~e~~~~~~~~pi~v~FeIp 384 (424)
T KOG0937|consen 305 SANNVEICIPVPDDASSPSFKTSLGSAKYDPEKSALRWTIKKFVGGKEYSLRARMDLPSEEHEEQCTEGLGPIKVKFEIP 384 (424)
T ss_pred ccceEEEEeeCCCccccceEeccCCceeeecccceEEEEeccccCCceEEEEEeecCCccccCCCCcccCCceEEEEEec
Confidence 7999999999997 67899999999999999999999999988762 2257777777653 2 35789999999995
Q ss_pred -cceeeeEEEE-----eecccccCCCceeee--cceEEE
Q psy16332 277 -QSYANIKIFI-----EKLFLLHCTPNVTEC--DGDYNY 307 (359)
Q Consensus 277 -~s~s~v~V~i-----P~~~~~~~~P~V~~~--dG~y~y 307 (359)
.+.+|++|.+ |+.++ ++.|+|++. .|.|.|
T Consensus 385 ~~T~SgiqVrylki~ep~~~y-~s~~WVRy~T~s~~Y~~ 422 (424)
T KOG0937|consen 385 YFTVSGIQVRYLKIIEPKSQY-QSLPWVRYNTQSGPYEI 422 (424)
T ss_pred ccccCCeEEEEEEecccccCC-CccceEEEEccCCceEe
Confidence 7888988887 44453 568888876 365554
No 8
>KOG0938|consensus
Probab=99.63 E-value=5.6e-15 Score=140.97 Aligned_cols=152 Identities=18% Similarity=0.304 Sum_probs=120.0
Q ss_pred cCcccchhhhccccEEEecCCCCCCCCCCCeeeEEEeecCCCCcccceEEEEeeCCCCCCceEEEEEEEEecCc---cce
Q psy16332 129 THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEHEE---KEL 205 (359)
Q Consensus 129 tHP~VdK~~f~~~~ii~~k~~~k~Fp~~~~~gvlkWR~~~~~e~~lPlsV~~w~s~~~~~~~~v~iEye~~~~~---~~l 205 (359)
||+||+..+|+++++|+|.||||.|.+ ||||.... .-||+.|.+.+.+.+ +..+...+.++..+ +..
T Consensus 261 FHqCV~L~kFn~eh~IsFvPPDGe~EL------MkYr~~en--InlPFrV~PiV~el~--r~kie~ri~iks~f~~kl~a 330 (446)
T KOG0938|consen 261 FHQCVRLDKFNSEHIISFVPPDGEFEL------MKYRVTEN--INLPFRVTPIVTELG--RTKIEYRITIKSLFPPKLLA 330 (446)
T ss_pred hheeeccccccccceEEEeCCCCceEe------EeeeeccC--cccceEeeeheeccc--ceeEEEEEEEeccCCchhhh
Confidence 899999999999999999999999987 99998753 448999999998876 34333333344432 568
Q ss_pred eeeEEEeeCCCC-CCCceeeCCceEEEeCCCCeEEEEEeeecCCC-ceeEEEEEeec----CCCCCcccEEEEEEec-cc
Q psy16332 206 NQVTISIPLPLH-CTPNVTECDGDYNYDARKNTLTWSLALIDSSN-KSGALEFSAPS----ASQSDFFPLQVSFSCN-QS 278 (359)
Q Consensus 206 ~dV~i~IPlp~~-~~~~v~~~dG~~~~d~~~~~L~W~I~~id~~~-~sgsleFsv~~----~d~d~~fPI~V~F~~~-~s 278 (359)
.+|++.||+|+. ....+....|.+.|.|+.+.+.|+|.++.+.. ...+.|+.+.. ......+||+++|+.. ++
T Consensus 331 ~~v~~rIPvP~ntv~~n~~v~~Gkaky~psen~ivWki~kf~G~tE~tlsAevels~Tt~nkq~WtrPPIsleFeV~MFt 410 (446)
T KOG0938|consen 331 KDVVVRIPVPPNTVKCNISVSNGKAKYVPSENAIVWKINKFNGLTESTLSAEVELSDTTQNKQQWTRPPISLEFEVPMFT 410 (446)
T ss_pred cceEEEecCCCccccceeEEecCccccCcccceEEEEecccCCcccceeEEEEEeccCccccccccCCCceeEEeeeeec
Confidence 999999999994 46777888999999999999999999998742 23444554322 1235799999999996 89
Q ss_pred eeeeEEEEeecc
Q psy16332 279 YANIKIFIEKLF 290 (359)
Q Consensus 279 ~s~v~V~iP~~~ 290 (359)
.+|+.|++=+..
T Consensus 411 ~SGL~VrylkV~ 422 (446)
T KOG0938|consen 411 NSGLVVRYLKVS 422 (446)
T ss_pred CCceEEEEEEEe
Confidence 999999986544
No 9
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents the C-terminal domain of the mu subunit from various clathrin adaptors (AP1, AP2 and AP3) []. The C-teminal domain has an immunoglobulin-like beta-sandwich fold consisting of 9 strands in 2 sheets with a Greek key topology, similar to that found in cytochrome f and certain transcription factors []. The mu subunit regulates the coupling of clathrin lattices with particular membrane proteins by self-phosphorylation via a mechanism that is still unclear []. The mu subunit possesses a highly conserved N-terminal domain of around 230 amino acids, which may be the region of interaction with other AP proteins; a linker region of between 10 and 42 amino acids; and a less well-conserved C-terminal domain of around 190 amino acids, which may be the site of specific interaction with the protein being transported in the vesicle []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1H6E_A 3L81_A 1W63_V 4EMZ_A 4EN2_A 2VGL_M 3ML6_F 2PR9_A 2JKT_M 1I31_A ....
Probab=99.55 E-value=9.7e-14 Score=131.26 Aligned_cols=182 Identities=23% Similarity=0.398 Sum_probs=127.3
Q ss_pred EeecCC----CCcccce--EEEEeeCCCCCC-ceEEEEEEEEec-------------Cc-------cceeeeEE--EeeC
Q psy16332 164 WRFTST----DESCLPL--SINCWPSDNGSG-GCDVNIEYELEH-------------EE-------KELNQVTI--SIPL 214 (359)
Q Consensus 164 WR~~~~----~e~~lPl--sV~~w~s~~~~~-~~~v~iEye~~~-------------~~-------~~l~dV~i--~IPl 214 (359)
||..+. +|.++.+ +|+|.++.+|.. .++|.+++.++. .. ..++|+.| ||.+
T Consensus 3 wR~~~~~~~~nei~vdv~E~i~~~~~~~G~~~~~~v~G~v~~~~~l~g~p~i~l~l~~~~~~~~~~~~l~~~~fH~cV~~ 82 (262)
T PF00928_consen 3 WRPSGIKYKKNEIFVDVVEKISAVLDRDGNILSSEVKGSVQCKSFLSGMPEIKLTLNNPLVVSKNGIKLDDVSFHPCVDL 82 (262)
T ss_dssp TS-STB--SSEEEEEEEEEEEEEEEETTSEEEEEEEEEEEEEEEE-SST-EEEEEESSSCCCTSSSBEESEEEEETTEEC
T ss_pred cccCCcccccceEEEEEEEEEEEEEccCCcEEEEEEEEEEEEEEeCCCCCeEEEEecCccccccCceeeeceeeccccCc
Confidence 776663 7888898 999999887743 677888888743 11 35788888 8877
Q ss_pred CC-CCCCc--eeeCCceEEEeCCCCeEEEEEeeecCCCceeEEEEEeecC-CCCCcccEEEEEEec----cceeeeEEEE
Q psy16332 215 PL-HCTPN--VTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSA-SQSDFFPLQVSFSCN----QSYANIKIFI 286 (359)
Q Consensus 215 p~-~~~~~--v~~~dG~~~~d~~~~~L~W~I~~id~~~~sgsleFsv~~~-d~d~~fPI~V~F~~~----~s~s~v~V~i 286 (359)
.+ ..... +.++||.|.+ |+|++.. ....++.++++.. ..++.+-+.++.+.+ ..+.+|.|.+
T Consensus 83 ~~~~~~~~i~f~PPdg~f~L------l~Yr~~~----~~~~P~~i~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~v~I~i 152 (262)
T PF00928_consen 83 SKFESDRVISFIPPDGEFTL------LRYRVSS----NSPLPFKITCWVSEKSSGRFEVTIELESNFPNKISLENVVIRI 152 (262)
T ss_dssp CCCCSHTEEEE---SEEEEE------EEEEEES----SS--SEEEEEEEEEETTTEEEEEEEEEE-S-TTSEEEEEEEEE
T ss_pred cccccccceecCCCCceEEE------EEEEccC----CCCCCcEEEEEeccCCCceEEEEEEecccCCCCceeceEEEEe
Confidence 66 44343 4889999875 9999833 2455666666443 345677888877752 4799999999
Q ss_pred eecccccCCCceeeecceEEEeCCCCEEEEEEeeEcCC---CCeEEEEEEccCCCCC--CccceEEEEeeceecc
Q psy16332 287 EKLFLLHCTPNVTECDGDYNYDARKNTLTWSLALIDSS---NKSGALEFSAPSASQS--DFFPLQVSFSCNQSYA 356 (359)
Q Consensus 287 P~~~~~~~~P~V~~~dG~y~y~~~~~~l~W~I~~i~~~---~~sgs~eF~~~~~~~~--~fFPi~V~F~s~~~~~ 356 (359)
|.|. ....+.+....|+++|+.++++++|+|+.++++ ..+|+++|..+...++ .+|||+|+|+.....+
T Consensus 153 plP~-~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~pi~v~F~~~~~~~ 226 (262)
T PF00928_consen 153 PLPP-GTSSPSIESSDGSAEYDEEENALVWKIKKLPGGSESTLSGTLEFSSPSSVPSDWSFFPISVEFTIPGYTL 226 (262)
T ss_dssp E--T-TEEEEEEEESSSEEEEETGCTEEEEEEEEEETSEEEEEEEEEEEEEECCSS-S-----EEEEEEESTSET
T ss_pred ecCC-ccccceeeecCceEEEEccCCEEEEEECCccCcccccEEEEEEecCCCcccccccceeEEEEEEeCCccc
Confidence 9987 466788888889999999999999999999883 3678888888665444 6999999999987654
No 10
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=99.39 E-value=2.8e-12 Score=110.83 Aligned_cols=88 Identities=28% Similarity=0.344 Sum_probs=81.4
Q ss_pred eceeEEEeecCCceeEEeecccccchhHHHHHHhhhhhhhcC--CCccceEEeCCEEEEEEEcCCEEEEEEecCCccHHH
Q psy16332 40 AQEATKIKLKNIKIAIVSRQFVEMTRARIEGLLAAFPKLMSS--GKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILE 117 (359)
Q Consensus 40 ~~s~~~i~~~~Gk~~LisRq~rdi~r~~ie~~l~~F~~li~~--~~~~t~ve~~~vryvY~~~~~lYl~~iT~~nsNi~~ 117 (359)
|++|+.|+|++|| ++++|.|++.++.+-..+++++.+++.. ...+|+++.++.+|+|+++++||+++++..+.|.+.
T Consensus 1 MI~~i~i~n~~G~-~i~~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~ 79 (141)
T PF01217_consen 1 MIKAILILNSQGK-RILSKYYRDVSEEERQKLFEKFIKKKSSRNSKQSPIFEHDNYRIVYKRYSDLYFVVVGDENENELL 79 (141)
T ss_dssp SEEEEEEEETTSE-EEEEEESSTSTSHHHHHHHHHHHHHHHTSSSSSTSEEEETTEEEEEEEETTEEEEEEESSTSBHHH
T ss_pred CEEEEEEEcCCCC-EEEehhcCCccHHHHHHHHHHHHHHHHhcccccceeeecccceeeeEeeccEEEEEEeecccchHH
Confidence 4578899999999 9999999999988888899999888865 346899999999999999999999999999999999
Q ss_pred HHHHHHHhhhc
Q psy16332 118 DLETLRLFSRV 128 (359)
Q Consensus 118 ~l~~L~~l~~v 128 (359)
.+++||.++++
T Consensus 80 ~~e~l~~~v~~ 90 (141)
T PF01217_consen 80 LLEFLHRLVEV 90 (141)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 99999999998
No 11
>KOG2677|consensus
Probab=97.88 E-value=8e-06 Score=84.33 Aligned_cols=173 Identities=20% Similarity=0.304 Sum_probs=110.0
Q ss_pred cCcccchhhhccccEEEecCCCC-CCCCCCCeeeEEEeecCCCCcccceEEEEeeCCCCCCceEEEEEEEEec-------
Q psy16332 129 THPNVDKELFKSKTEIGLKNPSK-PFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEH------- 200 (359)
Q Consensus 129 tHP~VdK~~f~~~~ii~~k~~~k-~Fp~~~~~gvlkWR~~~~~e~~lPlsV~~w~s~~~~~~~~v~iEye~~~------- 200 (359)
||-||++..|.++++|.|.++|+ -|.+ ||.|..-..+ -+|+++.--++.+|. ..+|.++..+..
T Consensus 664 FH~cVn~~eF~~srVI~F~PlDaCrFEl------MRFrt~~~~~-~lpftlks~~~V~Ga-~VEvq~~~~mat~~qr~rd 735 (922)
T KOG2677|consen 664 FHGCVNEDEFHNSRVILFNPLDACRFEL------MRFRTVFAEK-TLPFTLKSATSVNGA-EVEVQSWLRMATGFQRNRD 735 (922)
T ss_pred eecccchhhccccceEEecCcccceeee------eeeeeecCCC-cCceeeeeeeeeccc-eeehHHHHHHHhhhhhccC
Confidence 89999999999999999999877 4555 9999755422 489998888877762 333333333311
Q ss_pred --CccceeeeEEEeeCCCC---------------------------------CCCceeeCCceEEEeCCCCeEEEEEeee
Q psy16332 201 --EEKELNQVTISIPLPLH---------------------------------CTPNVTECDGDYNYDARKNTLTWSLALI 245 (359)
Q Consensus 201 --~~~~l~dV~i~IPlp~~---------------------------------~~~~v~~~dG~~~~d~~~~~L~W~I~~i 245 (359)
..+..+||.|..|+|++ +.|.|....|+.+|...-..++|+|..+
T Consensus 736 ~~~~vpCenI~IrfPVPs~WIk~fr~e~~~g~kSlkaK~nR~a~~gsl~~~~sepvi~vt~G~AKYEhay~siVWrI~RL 815 (922)
T KOG2677|consen 736 PLTQVPCENIMIRFPVPSEWIKNFRRESVLGEKSLKAKVNRGASFGSLSVSGSEPVIRVTLGTAKYEHAYNSIVWRINRL 815 (922)
T ss_pred ccccCcccceeEeccCcHHHHHHHHHHhhhccchhhhhhcccccccchhhccCCceEEEeecchhhHHhhhhheeecccC
Confidence 12568999999998741 2355566678877766778899999988
Q ss_pred cCCCce--------eEEEEEeecCCC--CCc-ccEEEEEEec-cceeeeEEEEeecccccC-CCceeeecceEEEeCCCC
Q psy16332 246 DSSNKS--------GALEFSAPSASQ--SDF-FPLQVSFSCN-QSYANIKIFIEKLFLLHC-TPNVTECDGDYNYDARKN 312 (359)
Q Consensus 246 d~~~~s--------gsleFsv~~~d~--d~~-fPI~V~F~~~-~s~s~v~V~iP~~~~~~~-~P~V~~~dG~y~y~~~~~ 312 (359)
++.|+. ..+|++ +.++ +.| .=++|+|+-. .++++-.|+.-.+..+.. .-.|++ .+.|+|.+.-+
T Consensus 816 PdKnsa~~hpHcl~c~lELg--Sd~evPs~f~p~~~V~FsmP~t~aS~t~VRSisVE~~~~v~K~V~y-~A~Y~yqv~l~ 892 (922)
T KOG2677|consen 816 PDKNSASGHPHCLFCHLELG--SDREVPSRFAPHVNVEFSMPTTSASKTSVRSISVEDKTDVRKWVNY-SAHYSYQVALG 892 (922)
T ss_pred CccccccCCCeeEEEEEecc--ccccCchhhccccceeeeccccccccceeeeeeccccccHHHHHhh-hhheeeeeeec
Confidence 764431 344442 2211 223 3478999874 456666666542221111 223443 46788766433
No 12
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans.This C-terminal domain is structurally similar to mu homology domains, and is the region of the muniscin proteins involved in the interactions with the endocytic adaptor-scaffold proteins Ede1-eps15. This interaction influences muniscin localisation. The muniscins provide a combined adaptor-membrane-tubulation activity that is important for regulating endocytosis.; PDB: 3G9H_A.
Probab=97.46 E-value=0.0014 Score=62.56 Aligned_cols=125 Identities=22% Similarity=0.336 Sum_probs=68.1
Q ss_pred eeeEEEeecCCCC--cccceEEEEeeCCCCCCceEEEEEEEEecC----ccceeeeEEEeeCCCC-CCCceeeCCceEEE
Q psy16332 159 IGVLKWRFTSTDE--SCLPLSINCWPSDNGSGGCDVNIEYELEHE----EKELNQVTISIPLPLH-CTPNVTECDGDYNY 231 (359)
Q Consensus 159 ~gvlkWR~~~~~e--~~lPlsV~~w~s~~~~~~~~v~iEye~~~~----~~~l~dV~i~IPlp~~-~~~~v~~~dG~~~~ 231 (359)
.+++||++..... ..+||-+..-..... ..+++.+.|.++.. ...|+||.|.+++..+ ..-.-..+.|+|.
T Consensus 90 ~~alKYqv~~~~~~~~~~Pl~l~~~Wk~e~-~~tsl~l~Y~~Np~~~~~~~~L~nv~~~v~l~g~~~ts~~skP~g~~~- 167 (257)
T PF10291_consen 90 KQALKYQVHSDPSNLSSVPLILKPVWKCEP-SQTSLILDYKLNPDAFASPVPLENVVFSVPLDGGRATSAQSKPQGTWN- 167 (257)
T ss_dssp EEEEEEEEES--------SEEEEEEEEE-S-SEEEEEEEEEE-TTT--E-EEEEEEEEEEEB-SS-EEEEEESSS--B--
T ss_pred hceEEEEEeccccccCCCCeEEEeEEEeCC-ceEEEEEEEEeChhhccccceeeeEEEEEEcCCccccccccCCCcccc-
Confidence 3889999987532 678997664433333 48999999998762 2579999999999765 2222234568765
Q ss_pred eCCCCeEEEEEeeecCC-Cce-eEEE--EEeecCCCCCcccEEEEEEec--cceeeeEEEEe
Q psy16332 232 DARKNTLTWSLALIDSS-NKS-GALE--FSAPSASQSDFFPLQVSFSCN--QSYANIKIFIE 287 (359)
Q Consensus 232 d~~~~~L~W~I~~id~~-~~s-gsle--Fsv~~~d~d~~fPI~V~F~~~--~s~s~v~V~iP 287 (359)
.+.+-+.|+++.+... ... ++|. |.+... ...--+|.++|++. .+++++.|..-
T Consensus 168 -~e~~ri~Wrl~el~~~~~~~~~kL~ARf~~~~~-~~~p~~v~vkF~~~~~~~~sg~~i~~~ 227 (257)
T PF10291_consen 168 -KEKNRITWRLPELSLTSEGEGGKLIARFMTSGG-PSRPGGVEVKFEIEGGSTLSGLGISLV 227 (257)
T ss_dssp -SSS-EEEEE-SSEEEETT---EEEEEEEEESS-----SS-EEEEEEE---S-SS----EEE
T ss_pred -CCCcEEEEECCcccccCCCCCceEEEEEECCCC-CCCCceEEEEEEEcCCCcccCcEEEEe
Confidence 6789999999887531 111 4444 444222 12566899999986 56788776654
No 13
>KOG2740|consensus
Probab=97.12 E-value=0.011 Score=58.10 Aligned_cols=185 Identities=14% Similarity=0.237 Sum_probs=111.0
Q ss_pred CeeeEEEeecCC----CCcccce--EEEEeeCCCCCC-ceEEEEEEEEecC-------------ccceeeeEE--EeeCC
Q psy16332 158 DIGVLKWRFTST----DESCLPL--SINCWPSDNGSG-GCDVNIEYELEHE-------------EKELNQVTI--SIPLP 215 (359)
Q Consensus 158 ~~gvlkWR~~~~----~e~~lPl--sV~~w~s~~~~~-~~~v~iEye~~~~-------------~~~l~dV~i--~IPlp 215 (359)
....+-||-.+. ||.++++ .+..-+..+|.- .++|.+++++..+ ...|+||.| ||.+-
T Consensus 162 ~~s~VPWR~~~~Ky~nNE~yvdvlEeidai~~k~gslv~~eI~g~vd~~~qLsgmPdltlsl~np~~L~dvsfHpcVr~k 241 (418)
T KOG2740|consen 162 ALSNVPWRTAGVKYTNNEAYVDVLEEIDAIVDKKGSLVFGEIQGIVDVCSQLSGMPDLTLSLNNPRLLGDVSFHPCVRYK 241 (418)
T ss_pred ccccccccccCcccccchhhhhhhheeheEecCCCCEEEEEEEEEEEEEEeecCCCceEEEccCccccCCcccccceeec
Confidence 355689998764 8989988 899999888742 5666666665331 135899999 99997
Q ss_pred C-CC--CCceeeCCceEEE-----eC--CCCeEEEEEeeecC-CCceeEEEEEeecCCCCCcccEEEEEEeccceeeeEE
Q psy16332 216 L-HC--TPNVTECDGDYNY-----DA--RKNTLTWSLALIDS-SNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKI 284 (359)
Q Consensus 216 ~-~~--~~~v~~~dG~~~~-----d~--~~~~L~W~I~~id~-~~~sgsleFsv~~~d~d~~fPI~V~F~~~~s~s~v~V 284 (359)
+ .. .-.++++||.|.. +- ....-...-.++.- ++..+++..++..... -.+++..+.|
T Consensus 242 rwe~~~~lsFIPPDGkFrLlsy~v~~~~~v~~pvyv~~~i~l~~~~~~ri~~tvg~~~~-----------~gK~ie~itV 310 (418)
T KOG2740|consen 242 RWESHSVLSFIPPDGKFRLLSYRVDAQNQVAIPVYVKNSISLDSNHQGRISLTVGPKKK-----------MGKTIELITV 310 (418)
T ss_pred ccccccceEEcCCCCcEEEEEEEEehhhccccceEEeeeeccCCCceEEEEEecccccc-----------ccceeEeEEE
Confidence 7 33 4445999999862 11 11111122222211 1235677766643211 1233333344
Q ss_pred EEeecccccCCCceeeecceEEEeCCCCEEEEEEeeEcCCC---CeEEEEEEccCCCCCCccceEEEEeecee
Q psy16332 285 FIEKLFLLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSN---KSGALEFSAPSASQSDFFPLQVSFSCNQS 354 (359)
Q Consensus 285 ~iP~~~~~~~~P~V~~~dG~y~y~~~~~~l~W~I~~i~~~~---~sgs~eF~~~~~~~~~fFPi~V~F~s~~~ 354 (359)
..-.|.+ ..+-.-....|++..++..+.+.|.+++|..+. -.|.++.+-...-..++.-++++|.-++.
T Consensus 311 t~~~pn~-i~~~~k~~~~g~~~~~~~~k~l~W~~~~i~tg~lp~Lkg~~~~e~~~sk~~~l~t~~Lqykiqg~ 382 (418)
T KOG2740|consen 311 TVQDPNE-IAYASKILTHGTFTNSIIMKQLTWTFGSIATGKLPVLKGTINLEPGFSKKVDLPTLSLQYKIQGQ 382 (418)
T ss_pred EecCccc-eeeeecccccceeEeecccceeEEEeecccCCcccccccccccCCCCCccccCcccceeeeeeee
Confidence 4332221 222222335699999998889999999996655 55666655222445668888888875543
No 14
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]
Probab=96.33 E-value=0.027 Score=48.44 Aligned_cols=86 Identities=21% Similarity=0.298 Sum_probs=73.2
Q ss_pred eeEEEeecCCceeEEeecccccchhHHHHHHhhhhhhhcC--CCccceEEeCCEEEEEEEcCCEEEEEEecCCccHHHHH
Q psy16332 42 EATKIKLKNIKIAIVSRQFVEMTRARIEGLLAAFPKLMSS--GKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDL 119 (359)
Q Consensus 42 s~~~i~~~~Gk~~LisRq~rdi~r~~ie~~l~~F~~li~~--~~~~t~ve~~~vryvY~~~~~lYl~~iT~~nsNi~~~l 119 (359)
-++-|.+++|| +=|.|-|..++...=-.+++.--.++.+ .++..++|..+-+-+|.+.-+||++......-|=+-.|
T Consensus 3 ~~vli~nrqgk-~RL~K~yt~~~~~e~~kli~~i~~lIs~R~~ke~N~~e~k~~kiVYrrYA~LyF~f~Vd~~dnEl~iL 81 (152)
T COG5030 3 KFVLIFNRQGK-PRLVKWYTPVSDPEQAKLIADIYELISARKPKESNFIEGKNEKIVYRRYATLYFVFGVDNDDNELIIL 81 (152)
T ss_pred EEEEEEcCCCc-eeeeEeeccCCcHHHHHHHHHHHHHHHcCCchhcccccccCcEEEeeecCcEEEEEEEcCCCCcchHH
Confidence 35789999999 9999999966644444577777888876 35778999988899999999999988888788999999
Q ss_pred HHHHHhhhc
Q psy16332 120 ETLRLFSRV 128 (359)
Q Consensus 120 ~~L~~l~~v 128 (359)
+-.|.|+++
T Consensus 82 ~lIh~FVE~ 90 (152)
T COG5030 82 ELIHNFVEI 90 (152)
T ss_pred HHHHHHHHH
Confidence 999999998
No 15
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=95.64 E-value=0.08 Score=53.93 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=59.2
Q ss_pred EEEeecCCceeEEeecccccchhHHHHHHhhhhhhhc---C-CCccceEEeCCEEEEEEEcCCEEEEEEecCCcc---HH
Q psy16332 44 TKIKLKNIKIAIVSRQFVEMTRARIEGLLAAFPKLMS---S-GKQHTFVETDSVRYVYQPLEKLYMLLITTKTSN---IL 116 (359)
Q Consensus 44 ~~i~~~~Gk~~LisRq~rdi~r~~ie~~l~~F~~li~---~-~~~~t~ve~~~vryvY~~~~~lYl~~iT~~nsN---i~ 116 (359)
++|++..|| |+-||.=.| +.+-++++.+..++. + +..--.+..++.++|+...+-||++++++..-. +.
T Consensus 14 ~fIlS~AGK-PIysr~G~e---~~l~~~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l~ 89 (415)
T PF03164_consen 14 FFILSSAGK-PIYSRYGDE---DKLSSLMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQLR 89 (415)
T ss_pred EEEECCCCc-eeEEecCCh---HHHHHHHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHHH
Confidence 499999999 999998333 455567777777765 2 333356788999999999999999999998777 55
Q ss_pred HHHHHHHH
Q psy16332 117 EDLETLRL 124 (359)
Q Consensus 117 ~~l~~L~~ 124 (359)
..|++||.
T Consensus 90 ~qL~~ly~ 97 (415)
T PF03164_consen 90 KQLDYLYS 97 (415)
T ss_pred HHHHHHHH
Confidence 66777765
No 16
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans.This C-terminal domain is structurally similar to mu homology domains, and is the region of the muniscin proteins involved in the interactions with the endocytic adaptor-scaffold proteins Ede1-eps15. This interaction influences muniscin localisation. The muniscins provide a combined adaptor-membrane-tubulation activity that is important for regulating endocytosis.; PDB: 3G9H_A.
Probab=93.45 E-value=2.4 Score=40.39 Aligned_cols=169 Identities=15% Similarity=0.166 Sum_probs=81.3
Q ss_pred EEEEeeCCCCCCceEEEEEEEEecC--ccc----eeeeEEEeeCCC--CC---CCce----eeCCceEEEeCCC------
Q psy16332 177 SINCWPSDNGSGGCDVNIEYELEHE--EKE----LNQVTISIPLPL--HC---TPNV----TECDGDYNYDARK------ 235 (359)
Q Consensus 177 sV~~w~s~~~~~~~~v~iEye~~~~--~~~----l~dV~i~IPlp~--~~---~~~v----~~~dG~~~~d~~~------ 235 (359)
+||+|.....-.+..|++|+.++=. ... ...+.|.+.-+. +. ++.+ ...+++|.++...
T Consensus 10 ~VnA~Fk~g~~~~v~v~GEv~ls~~~~~~~~~~~~~~l~~rl~n~~~le~i~pN~~~v~~~~~~~~~f~~n~~~l~~~~~ 89 (257)
T PF10291_consen 10 TVNAYFKGGQLSKVKVTGEVALSYPAGISSSLTSPPPLSFRLNNFSRLEKIAPNPQFVSSSSQSDGEFWLNMSALTSHLP 89 (257)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEEE--SSS-----SEEEEEEETGGGEEEEEE-TTTE--EEEETTEEEE-TTTTBT-E-
T ss_pred EEEEEEECCcEEEEEEEEEEEEecCCChhhcccCCCcEEEEEcCcchhceeecCHhHeecCCCCCCcEEEehHHhhhhhh
Confidence 7888887654336778888877321 011 122333322221 00 1222 2347788875532
Q ss_pred -CeEEEEEeeecCCCceeEEEEE-eecCCCCCcccEEEEEEec-------cceeeeEEEEeecccccC-CCceeee-cce
Q psy16332 236 -NTLTWSLALIDSSNKSGALEFS-APSASQSDFFPLQVSFSCN-------QSYANIKIFIEKLFLLHC-TPNVTEC-DGD 304 (359)
Q Consensus 236 -~~L~W~I~~id~~~~sgsleFs-v~~~d~d~~fPI~V~F~~~-------~s~s~v~V~iP~~~~~~~-~P~V~~~-dG~ 304 (359)
..++..+..-+......++.+. .|- -+....-+.++|+.+ .++.||.|..+... . ...+... .|.
T Consensus 90 ~~alKYqv~~~~~~~~~~Pl~l~~~Wk-~e~~~tsl~l~Y~~Np~~~~~~~~L~nv~~~v~l~g---~~~ts~~skP~g~ 165 (257)
T PF10291_consen 90 KQALKYQVHSDPSNLSSVPLILKPVWK-CEPSQTSLILDYKLNPDAFASPVPLENVVFSVPLDG---GRATSAQSKPQGT 165 (257)
T ss_dssp EEEEEEEEES--------SEEEEEEEE-E-SSEEEEEEEEEE-TTT--E-EEEEEEEEEEEB-S---S-EEEEEESSS--
T ss_pred hceEEEEEeccccccCCCCeEEEeEEE-eCCceEEEEEEEEeChhhccccceeeeEEEEEEcCC---ccccccccCCCcc
Confidence 3455555332210145566664 332 223456667777653 36788999888533 2 1111111 376
Q ss_pred EEEeCCCCEEEEEEeeEcCCC----CeEEEEEEccCCCCCCccceEEEEeec
Q psy16332 305 YNYDARKNTLTWSLALIDSSN----KSGALEFSAPSASQSDFFPLQVSFSCN 352 (359)
Q Consensus 305 y~y~~~~~~l~W~I~~i~~~~----~sgs~eF~~~~~~~~~fFPi~V~F~s~ 352 (359)
|. .+++.+.|+|+.+.-.+ -.-.+.|...++- ..--||.|+|+..
T Consensus 166 ~~--~e~~ri~Wrl~el~~~~~~~~~kL~ARf~~~~~~-~~p~~v~vkF~~~ 214 (257)
T PF10291_consen 166 WN--KEKNRITWRLPELSLTSEGEGGKLIARFMTSGGP-SRPGGVEVKFEIE 214 (257)
T ss_dssp B---SSS-EEEEE-SSEEEETT---EEEEEEEEESS-----SS-EEEEEEE-
T ss_pred cc--CCCcEEEEECCcccccCCCCCceEEEEEECCCCC-CCCceEEEEEEEc
Confidence 64 77889999999985433 2334457775432 2566999999987
No 17
>KOG0934|consensus
Probab=92.96 E-value=0.26 Score=42.40 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=61.2
Q ss_pred EEeecCCceeEEeecccccc--------hhHHHHHHhhhhhhhcCCCccceEEeCCEEEEEEEcCCEEEEEEecCCccHH
Q psy16332 45 KIKLKNIKIAIVSRQFVEMT--------RARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNIL 116 (359)
Q Consensus 45 ~i~~~~Gk~~LisRq~rdi~--------r~~ie~~l~~F~~li~~~~~~t~ve~~~vryvY~~~~~lYl~~iT~~nsNi~ 116 (359)
-..++.|| .=|+.+|.-++ |.-+...|++ +.++..++|..+..-||.+...||++.--.-+-|=+
T Consensus 6 LlvsrQGk-~rL~k~y~~~~~~er~~i~re~i~~~Lar------~pk~csfie~kd~kvVyrryasl~f~~~v~~~dNEL 78 (145)
T KOG0934|consen 6 LLVSRQGK-TRLQKWYEALSIKERKKIERELIKSVLAR------KPKMCSFIEYKDEKVVYRRYASLFFCVGVEDNDNEL 78 (145)
T ss_pred EEEeccCc-eehhHHHhhhcHHHHHHHHHHHHHHHHhC------CcccccchhccCceehhhhhhhEEEEEEEecCCchh
Confidence 45689999 99999997444 3333333321 134668999999999999999999888777999999
Q ss_pred HHHHHHHHhhhc
Q psy16332 117 EDLETLRLFSRV 128 (359)
Q Consensus 117 ~~l~~L~~l~~v 128 (359)
..|++.|+++++
T Consensus 79 ~~LE~IH~~vE~ 90 (145)
T KOG0934|consen 79 AILEFIHNYVEL 90 (145)
T ss_pred hHHHHHHHHHHH
Confidence 999999999998
No 18
>KOG0936|consensus
Probab=89.89 E-value=1.6 Score=38.24 Aligned_cols=87 Identities=17% Similarity=0.300 Sum_probs=63.5
Q ss_pred ceeEEEeecCCceeEEeecccccchhHHHHHHhhhhhhhcC--CCccceEEe------CCEEEEEEEcCCEEEEEEecCC
Q psy16332 41 QEATKIKLKNIKIAIVSRQFVEMTRARIEGLLAAFPKLMSS--GKQHTFVET------DSVRYVYQPLEKLYMLLITTKT 112 (359)
Q Consensus 41 ~s~~~i~~~~Gk~~LisRq~rdi~r~~ie~~l~~F~~li~~--~~~~t~ve~------~~vryvY~~~~~lYl~~iT~~n 112 (359)
+-|+.|.+.+|| |=+.|=|..++-..=..|+..--.++.+ ..+..|.|. .+.|-+|..+-.||++.+-...
T Consensus 2 I~AvlifNn~gk-PRL~KFY~p~~~~~Qq~lir~vf~lvs~R~~n~~nFLe~~~l~g~~d~rlIYrhYATLYFvfvvD~s 80 (182)
T KOG0936|consen 2 IKAVLIFNNKGK-PRLVKFYTPVDEEKQQQLIREVFHLVSKRPDNVCNFLEGNSLIGGSDNRLIYRHYATLYFVFVVDSS 80 (182)
T ss_pred eeEEEEecCCCC-cceeeecCcCChHHHHHHHHHHHHHHHcCCchHhhhhccccccCCccceeehheeeeEEEEEEEcCC
Confidence 457899999999 9999999955433222333333334443 223344443 4689999999999999999999
Q ss_pred ccHHHHHHHHHHhhhc
Q psy16332 113 SNILEDLETLRLFSRV 128 (359)
Q Consensus 113 sNi~~~l~~L~~l~~v 128 (359)
-+=+-.|+-++-|++.
T Consensus 81 EsEL~iLDLIQvfVEt 96 (182)
T KOG0936|consen 81 ESELGILDLIQVFVET 96 (182)
T ss_pred cchhHHHHHHHHHHHH
Confidence 9999999988888887
No 19
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.
Probab=89.56 E-value=3.6 Score=34.71 Aligned_cols=84 Identities=19% Similarity=0.150 Sum_probs=59.2
Q ss_pred eEEEeecCCceeEEeecccccchhHH-HHHHhhhhhhhcC------CCcc-ceEEeCCEEEEEEEcCCEEEEEEecCCcc
Q psy16332 43 ATKIKLKNIKIAIVSRQFVEMTRARI-EGLLAAFPKLMSS------GKQH-TFVETDSVRYVYQPLEKLYMLLITTKTSN 114 (359)
Q Consensus 43 ~~~i~~~~Gk~~LisRq~rdi~r~~i-e~~l~~F~~li~~------~~~~-t~ve~~~vryvY~~~~~lYl~~iT~~nsN 114 (359)
++.|+|+.|= ||+.=-.-+.+..+. .++++.|..-..+ |+.. -+...++...+-.....+|+..+++.++|
T Consensus 19 ~I~itDrDGv-pi~~v~~~~~~~~~~~~~~~~tf~~a~~Q~~KL~lG~nk~ii~~Y~~~qvv~~~~~pl~it~ias~~aN 97 (119)
T PF08923_consen 19 AIVITDRDGV-PIAKVSSDSAPESAMRPSLLSTFAMAIDQASKLGLGKNKSIIAYYDSYQVVQFNKLPLYITFIASSNAN 97 (119)
T ss_dssp EEEEEETTS--EEEEEE-TTS-GGGGSHHHHCCHHHHHHHHTTSSS-SEEEEEEEESSEEEEEEEETTEEEEEEEETTS-
T ss_pred EEEEECCCCc-EEEEecCCCCcchhhhhHHHHHHHHHhhcccccCCCCceEEEEEeCCEEEEEEeCCCeEEEEEecCCCC
Confidence 4499999996 777633336665556 4788888877765 3433 44566888888888899999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy16332 115 ILEDLETLRLFSR 127 (359)
Q Consensus 115 i~~~l~~L~~l~~ 127 (359)
+=..+..-..+..
T Consensus 98 ~G~il~l~~~L~~ 110 (119)
T PF08923_consen 98 TGLILSLEEELAP 110 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHH
Confidence 9887776665544
No 20
>KOG0935|consensus
Probab=87.06 E-value=5.8 Score=33.52 Aligned_cols=84 Identities=21% Similarity=0.277 Sum_probs=61.2
Q ss_pred EEEeecCCceeEEeecccccchhHHHHHHhhhhhhhcCC-Ccc-ceE-EeCCEEEEEEEcCCEEEEEEecCCccHHHHHH
Q psy16332 44 TKIKLKNIKIAIVSRQFVEMTRARIEGLLAAFPKLMSSG-KQH-TFV-ETDSVRYVYQPLEKLYMLLITTKTSNILEDLE 120 (359)
Q Consensus 44 ~~i~~~~Gk~~LisRq~rdi~r~~ie~~l~~F~~li~~~-~~~-t~v-e~~~vryvY~~~~~lYl~~iT~~nsNi~~~l~ 120 (359)
+-|-++.|| .=++|-|...+.++=-.+.+.-.+|+.+. .-| .++ +-+.-.-.|.+..+||.+.-....-|=+.-|+
T Consensus 5 ILiqNr~Gk-~RLak~yv~~dd~ek~~~~~~vh~lvs~Rd~K~~~~~~~~~~~~~~~rryagLyf~~~vd~tDnelayLe 83 (143)
T KOG0935|consen 5 ILIQNRAGK-TRLAKWYVQFDDDEKQKLIEEVHALVTVRDAKHTNFVEFRNFKIIYRRRYAGLYFCICVDVTDNELAYLE 83 (143)
T ss_pred EEEEccccc-eeheeeeeccCchHHHHHHHHHHHHHhhccchhhhheeeeeceEEEEEeeCCEEEEEEEecCCchHHHHH
Confidence 357799999 99999998554443345666778888762 233 333 33333334468999998887777889999999
Q ss_pred HHHHhhhc
Q psy16332 121 TLRLFSRV 128 (359)
Q Consensus 121 ~L~~l~~v 128 (359)
.+|+|++|
T Consensus 84 ~IHlFVEv 91 (143)
T KOG0935|consen 84 HIHLFVEV 91 (143)
T ss_pred HHHHHHHH
Confidence 99999998
No 21
>KOG0997|consensus
Probab=69.01 E-value=34 Score=35.53 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=53.1
Q ss_pred EEeecCCceeEEeeccc-ccchhHHHHHHhhhhhhhc---C-CCccceEEeCCEEEEEEEcCCEEEEEEecCCccHHHHH
Q psy16332 45 KIKLKNIKIAIVSRQFV-EMTRARIEGLLAAFPKLMS---S-GKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDL 119 (359)
Q Consensus 45 ~i~~~~Gk~~LisRq~r-di~r~~ie~~l~~F~~li~---~-~~~~t~ve~~~vryvY~~~~~lYl~~iT~~nsNi~~~l 119 (359)
+|++..|| |+.||.=. +... +.+..-..+|+ . +..-+.+.++|.+.|+..-+-||++++.+.+--+.|.+
T Consensus 121 filseaGK-PiyS~~gs~e~l~----stmGv~~alISf~q~~~~~i~si~a~g~k~vfl~kspl~LvA~s~t~~Sa~qL~ 195 (523)
T KOG0997|consen 121 FILSEAGK-PIYSRHGSDEALS----STMGVMQALISFFQVSGLAITSIHAFGNKLVFLQKSPLLLVAVSRTSQSAAQLL 195 (523)
T ss_pred EEEecCCC-ceeeecCcHHHHH----HHHHHHHHHHHHHhhCCceEEEEEecCceEEEEecCcEEEEEEcccccCHHHHH
Confidence 88899999 99999766 3222 22222233443 2 33458899999999999999999999998654444433
Q ss_pred -HHHHHhhhc
Q psy16332 120 -ETLRLFSRV 128 (359)
Q Consensus 120 -~~L~~l~~v 128 (359)
+-+.+.+|+
T Consensus 196 ~qL~~ly~QI 205 (523)
T KOG0997|consen 196 QQLLLLYCQI 205 (523)
T ss_pred HHHHHHHHHH
Confidence 333444555
No 22
>KOG3343|consensus
Probab=66.60 E-value=68 Score=28.58 Aligned_cols=95 Identities=19% Similarity=0.207 Sum_probs=70.8
Q ss_pred eeEEEeecCCceeEEeecccccchhHHHHHHhhhhhhhcC---CCccceEEeCCEEEEEEEcCCEEEEEEecCCccHHHH
Q psy16332 42 EATKIKLKNIKIAIVSRQFVEMTRARIEGLLAAFPKLMSS---GKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILED 118 (359)
Q Consensus 42 s~~~i~~~~Gk~~LisRq~rdi~r~~ie~~l~~F~~li~~---~~~~t~ve~~~vryvY~~~~~lYl~~iT~~nsNi~~~ 118 (359)
-|+.|+|..|| -+..+-|-|=-++.+-+-. +|-|-+=+ ..+.-+.-.||..-||.-.=|||+.++-..+-|=+..
T Consensus 10 k~iliLD~~G~-Ri~aKYY~~~~~s~vkeqk-aFEK~lF~KT~kt~~eI~~ldg~~vvYk~~~Dl~fyv~G~~~ENEl~L 87 (175)
T KOG3343|consen 10 KAILILDSDGK-RILAKYYDDPHPSTVKEQK-AFEKNLFSKTSKTESEILLLDGNTVVYKSVIDLHFYVVGSEEENELML 87 (175)
T ss_pred heEEEEcCCCC-EeeeeecCCCcchhHHHHH-HHHHHHhcccccccceeEEecCcEEEEEecccEEEEEecCcchhHHHH
Confidence 36799999999 9999999843334333233 78887744 2234556668999999999999999999999999998
Q ss_pred HHHHHHhhhc----cCcccchhhh
Q psy16332 119 LETLRLFSRV----THPNVDKELF 138 (359)
Q Consensus 119 l~~L~~l~~v----tHP~VdK~~f 138 (359)
++.|+-+-+- ..-||+|...
T Consensus 88 ~svL~~l~dal~llLr~nveKr~l 111 (175)
T KOG3343|consen 88 MSVLTCLFDALSLLLRKNVEKREL 111 (175)
T ss_pred HHHHHHHHHHHHHHHHhChhHHHH
Confidence 8888775443 5677777653
No 23
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=65.08 E-value=53 Score=24.98 Aligned_cols=63 Identities=13% Similarity=0.224 Sum_probs=39.4
Q ss_pred EEeecCCceeEEeecccccchhHHHHHHhhhhhhhcC-------CC-ccceEEeCCEEEEEEEcCC-EEEEEE
Q psy16332 45 KIKLKNIKIAIVSRQFVEMTRARIEGLLAAFPKLMSS-------GK-QHTFVETDSVRYVYQPLEK-LYMLLI 108 (359)
Q Consensus 45 ~i~~~~Gk~~LisRq~rdi~r~~ie~~l~~F~~li~~-------~~-~~t~ve~~~vryvY~~~~~-lYl~~i 108 (359)
.|+|+.|. ++-+...-+..-..+-.+.+.+...... +. +.-.+++++-..+-.|+++ .+|+++
T Consensus 19 ~l~~~dG~-~i~~~~~~~~~~~~~aa~~a~~~~~~~~~~~~l~~~~~~~v~i~~~~~~i~i~~~~~~~~L~v~ 90 (91)
T PF03259_consen 19 VLVDKDGL-VIASSGIDDDDAEKLAAMAASLLAAAEKLAKELGEGELEQVRIETEKGEIIITPVGDFYLLVVL 90 (91)
T ss_dssp EEEETTSE-EEEETSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEEEESSEEEEEEECSTCEEEEEE
T ss_pred EEEcCCCC-EEEEecCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEECCCEEEEEEcCCCEEEEEE
Confidence 89999998 8877344333333444444444333322 22 4477888988888889988 555554
No 24
>PF03504 Chlam_OMP6: Chlamydia cysteine-rich outer membrane protein 6; InterPro: IPR003506 Three cysteine-rich proteins (also believed to be lipoproteins) make up the extracellular matrix of the Chlamydial outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. As these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism. The largest of these is the major outer membrane protein (MOMP), and constitutes around 60% of the total protein for the membrane []. OMP6 is the second largest, with a molecular mass of 58kDa, while the OMP3 protein is ~15kDa []. MOMP is believed to elicit the strongest immune response, and has recently been linked to heart disease through its sequence similarity to a murine heart-muscle specific alpha myosin []. The OMP6 family plays a structural role in the outer membrane during the EB stage of the Chlamydial cell, and different biovars show a small, yet highly significant, change at peptide charge level []. Members of this family include Chlamydia trachomatis, Chlamydia pneumoniae and Chlamydia psittaci.; GO: 0005201 extracellular matrix structural constituent
Probab=55.56 E-value=76 Score=25.18 Aligned_cols=61 Identities=16% Similarity=0.262 Sum_probs=33.9
Q ss_pred EEEEEecCccceeeeEEEeeCCCCCCCceeeCCceEEEeCCCCeEEEEEeeecCCCceeEEEEEeecC
Q psy16332 194 IEYELEHEEKELNQVTISIPLPLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSA 261 (359)
Q Consensus 194 iEye~~~~~~~l~dV~i~IPlp~~~~~~v~~~dG~~~~d~~~~~L~W~I~~id~~~~sgsleFsv~~~ 261 (359)
+|+...+. ...-||.|+=.||-+. .+..+|-+..- ...+-|.|+|+.+.. +. ..++++|++
T Consensus 34 iEi~a~gk-~DcvnVviTqqLPce~--eFV~SdPettp-~~D~kLVW~Ig~l~~-G~--k~kItVwVK 94 (95)
T PF03504_consen 34 IEILAQGK-KDCVNVVITQQLPCEV--EFVRSDPETTP-TPDGKLVWKIGRLGQ-GE--KCKITVWVK 94 (95)
T ss_pred EEEEEEcc-cceeEEEEeecCCcce--EEEecCCcccc-CCCCEEEEEeccccC-Cc--eeEEEEEeC
Confidence 44444443 4477888877777422 23333332221 234679999999854 22 355666653
No 25
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=42.90 E-value=2e+02 Score=24.18 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=48.7
Q ss_pred eceeEEEeecCCceeEEeeccc-c---cchhH-------HHHHHhhhhhhhcC-CC-ccceEEeCC-EEEEEEEcCCEEE
Q psy16332 40 AQEATKIKLKNIKIAIVSRQFV-E---MTRAR-------IEGLLAAFPKLMSS-GK-QHTFVETDS-VRYVYQPLEKLYM 105 (359)
Q Consensus 40 ~~s~~~i~~~~Gk~~LisRq~r-d---i~r~~-------ie~~l~~F~~li~~-~~-~~t~ve~~~-vryvY~~~~~lYl 105 (359)
|..++.|.++.|- -+-.|.|- + ++.++ +-+.-+---+++.- |+ ---.++.+. +-++||.+-.+=+
T Consensus 2 ave~~~iINksGg-lifqref~~~et~lnsneyLiLastlhgV~aI~tq~~p~~gssg~~~l~~~~f~m~I~qT~TG~kF 80 (134)
T COG5122 2 AVEQFFIINKSGG-LIFQREFGEGETELNSNEYLILASTLHGVSAILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGTKF 80 (134)
T ss_pred ceeEEEEEecCCc-EEEEEeccCCccccCcccEEEEeechhhhhhhhhhcccCCCCCceEEEEeccEEEEEEEecCCcEE
Confidence 5568899999998 99999995 3 22210 00000000011100 11 112344444 6789999999999
Q ss_pred EEEe-cCCccHHHHHH
Q psy16332 106 LLIT-TKTSNILEDLE 120 (359)
Q Consensus 106 ~~iT-~~nsNi~~~l~ 120 (359)
|+++ ++.+|++..+.
T Consensus 81 V~~~~k~t~na~~ql~ 96 (134)
T COG5122 81 VFVAEKRTVNALFQLQ 96 (134)
T ss_pred EEEecCCchhHHHHHH
Confidence 9999 88999987743
No 26
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=33.00 E-value=67 Score=27.85 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=25.3
Q ss_pred eEEEeecCCceeEEeecccccchhHHHHHH
Q psy16332 43 ATKIKLKNIKIAIVSRQFVEMTRARIEGLL 72 (359)
Q Consensus 43 ~~~i~~~~Gk~~LisRq~rdi~r~~ie~~l 72 (359)
+++++|..|. +|.--..|.++++++-.++
T Consensus 44 giAildL~G~-~l~l~S~R~~~~~evi~~I 72 (138)
T PF04312_consen 44 GIAILDLDGE-LLDLKSSRNMSRSEVIEWI 72 (138)
T ss_pred EEEEEecCCc-EEEEEeecCCCHHHHHHHH
Confidence 6799999999 9999999999999776444
No 27
>PF14903 WG_beta_rep: WG containing repeat
Probab=28.96 E-value=56 Score=20.26 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=16.2
Q ss_pred EEeecCCceeEEeecccccc
Q psy16332 45 KIKLKNIKIAIVSRQFVEMT 64 (359)
Q Consensus 45 ~i~~~~Gk~~LisRq~rdi~ 64 (359)
+++|.+|+ .++.-+|.++.
T Consensus 2 G~id~~G~-~vi~~~yd~i~ 20 (35)
T PF14903_consen 2 GYIDKNGK-IVIPPKYDEIY 20 (35)
T ss_pred EEEeCCCC-EEEEccccCcc
Confidence 68899999 99999998764
No 28
>KOG3432|consensus
Probab=28.94 E-value=20 Score=29.87 Aligned_cols=35 Identities=31% Similarity=0.603 Sum_probs=28.5
Q ss_pred eEEeeccc-ccchhHHHHHHhhhhhhhc-CCCccceE
Q psy16332 54 AIVSRQFV-EMTRARIEGLLAAFPKLMS-SGKQHTFV 88 (359)
Q Consensus 54 ~LisRq~r-di~r~~ie~~l~~F~~li~-~~~~~t~v 88 (359)
++|--||- +|=|.+|++.-..||..++ .+++|||=
T Consensus 65 IiLInq~~Ae~iR~~vD~h~~~vPAvLeIpSKdhPYd 101 (121)
T KOG3432|consen 65 IILINQFIAEMIRDRVDAHTQAVPAVLEIPSKDHPYD 101 (121)
T ss_pred EEEEhHHHHHHHHHHHHhccccCCeeEEecCCCCCCC
Confidence 45556777 9999999999999998875 48899983
No 29
>PF12182 DUF3642: Bacterial lipoprotein; InterPro: IPR020961 This region is found in proteins which are major virulence factors from Gram-negative bacteria and is approximately 60 amino acids in length. There is a single completely conserved Y residue that may be functionally important.; PDB: 3GE2_A.
Probab=28.79 E-value=90 Score=24.47 Aligned_cols=47 Identities=13% Similarity=0.278 Sum_probs=29.3
Q ss_pred ecceEEEeC-CCCEEEEEEeeEcCCCCeEEEEEEccCCCCCCccceEEEEeece
Q psy16332 301 CDGDYNYDA-RKNTLTWSLALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQ 353 (359)
Q Consensus 301 ~dG~y~y~~-~~~~l~W~I~~i~~~~~sgs~eF~~~~~~~~~fFPi~V~F~s~~ 353 (359)
-+|+|.|.. .++.+.|.|. | .+|.++ .+.++.+...-||++.-..+.
T Consensus 6 lDGTY~~~d~~~DqlTl~i~---G--~~Gt~t-~~e~dg~~e~~~V~~d~~nq~ 53 (79)
T PF12182_consen 6 LDGTYVGADPEGDQLTLVIT---G--NTGTWT-ELEDDGDQEIKQVTIDLANQR 53 (79)
T ss_dssp --EEEEEEE-TTEEEEEEEE---T--TEEEEE-EE-TTS-EEEEEEEEETTTTE
T ss_pred CCceEEEEecCCCEEEEEEE---C--CcceEE-EEcCCCCceeeEEEEeccCCE
Confidence 479999966 8889999986 3 377776 343444444667776654443
No 30
>KOG2677|consensus
Probab=27.62 E-value=39 Score=36.39 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=40.7
Q ss_pred CCCceeeecceEEEeCCCCEEEEEEeeEcCCC-Ce-----EEEEEEccCCC--CCCccc-eEEEEeece
Q psy16332 294 CTPNVTECDGDYNYDARKNTLTWSLALIDSSN-KS-----GALEFSAPSAS--QSDFFP-LQVSFSCNQ 353 (359)
Q Consensus 294 ~~P~V~~~dG~y~y~~~~~~l~W~I~~i~~~~-~s-----gs~eF~~~~~~--~~~fFP-i~V~F~s~~ 353 (359)
..|.++..-|+.+|..-=+.++|+|+....-| .+ -.+.|++.+.+ +..|.| ++|+|+-..
T Consensus 788 sepvi~vt~G~AKYEhay~siVWrI~RLPdKnsa~~hpHcl~c~lELgSd~evPs~f~p~~~V~FsmP~ 856 (922)
T KOG2677|consen 788 SEPVIRVTLGTAKYEHAYNSIVWRINRLPDKNSASGHPHCLFCHLELGSDREVPSRFAPHVNVEFSMPT 856 (922)
T ss_pred CCceEEEeecchhhHHhhhhheeecccCCccccccCCCeeEEEEEeccccccCchhhccccceeeeccc
Confidence 45777777788888766678999999985533 22 35667775533 344666 688887543
No 31
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=26.99 E-value=3.9e+02 Score=22.90 Aligned_cols=83 Identities=20% Similarity=0.281 Sum_probs=47.4
Q ss_pred eEEEeecCCceeEEeeccc-cc----chhHHH------HH---HhhhhhhhcC-----C----CccceEEeCCE-EEEEE
Q psy16332 43 ATKIKLKNIKIAIVSRQFV-EM----TRARIE------GL---LAAFPKLMSS-----G----KQHTFVETDSV-RYVYQ 98 (359)
Q Consensus 43 ~~~i~~~~Gk~~LisRq~r-di----~r~~ie------~~---l~~F~~li~~-----~----~~~t~ve~~~v-ryvY~ 98 (359)
+++|.++.|. -+-+|+|. .. ++...+ |+ |.+|-..+.. + ..-..++++.- =.+|+
T Consensus 3 slyI~nr~G~-lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~e 81 (142)
T PF04099_consen 3 SLYIFNRSGG-LIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCFE 81 (142)
T ss_dssp EEEEE-TTS--EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEEE
T ss_pred EEEEEeCCcc-eeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEEEEeCCEEEEEEE
Confidence 5699999999 99999999 33 111111 11 1233333332 0 11245777775 47899
Q ss_pred EcCCEEEEEEecCCc-cHHHHHHHHHHhhhc
Q psy16332 99 PLEKLYMLLITTKTS-NILEDLETLRLFSRV 128 (359)
Q Consensus 99 ~~~~lYl~~iT~~ns-Ni~~~l~~L~~l~~v 128 (359)
..-++=++++|..+. +....| +++..++
T Consensus 82 T~TGlKFvl~td~~~~~~~~~l--~~~~~~l 110 (142)
T PF04099_consen 82 TPTGLKFVLITDPNVPSLRDEL--LRIYYEL 110 (142)
T ss_dssp -TTS-EEEEEE-TTCCHCHHHH--HHHHHHH
T ss_pred cCcCcEEEEEecCCCccHHHHH--HHHHHHH
Confidence 999999999999988 544443 5666665
No 32
>PF09550 DUF2376: Conserved hypothetical phage protein (DUF2376); InterPro: IPR019056 Gene transfer agents belong to a group of unusual genetic exchange elements []. GTAs are unusual in the sense they have the structure of a small tailed phage, which do not possess typical phage traits such as host cell lysis and infectious transmission of the GTA genes. In the Rhodobacter capsulatus GTA the GTA particles contain random 4.5 kb DNA fragments of the R.capsulatus genome. These DNA fragments can be transmitted to other cells where allelic conversion may occur via homologous recombination. The genes coding for the GTA particles are of two distinct types: the first is a cluster of genes reminiscent of a cryptyic prophage, where a number of the genes have similarity to known phage structural genes; the second type consists of two genes coding for a cellular two-component signal transduction system, which regulates the transcription of the GTA structural gene cluster in a growth phase dependent manner []. This entry is represented by ORFg10.1 (RCAP_rcc01693) of the Gene Transfer Agent (GTA) of Rhodobacter capsulatus [see Fig.1, in ]. The function is not known.
Probab=23.94 E-value=51 Score=22.77 Aligned_cols=17 Identities=29% Similarity=0.718 Sum_probs=14.9
Q ss_pred cccchhHHHHHHhhhhh
Q psy16332 61 VEMTRARIEGLLAAFPK 77 (359)
Q Consensus 61 rdi~r~~ie~~l~~F~~ 77 (359)
..++|++++.|+++||.
T Consensus 27 ~pl~R~~L~~Lm~~~PD 43 (43)
T PF09550_consen 27 APLDRAELDALMRRFPD 43 (43)
T ss_pred CCCCHHHHHHHHHHCcC
Confidence 47899999999999983
No 33
>PF07166 DUF1398: Protein of unknown function (DUF1398); InterPro: IPR009833 This entry is represented by Bacteriophage DE3, Orf: ECD_10033. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Escherichia coli and Salmonella species. The function of this family is unknown.; PDB: 2HH8_A.
Probab=23.46 E-value=23 Score=30.14 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=23.3
Q ss_pred hhhhhhhcC----CCcc--ceEEeCCEEEEEEEcCCEEEEEEecCC
Q psy16332 73 AAFPKLMSS----GKQH--TFVETDSVRYVYQPLEKLYMLLITTKT 112 (359)
Q Consensus 73 ~~F~~li~~----~~~~--t~ve~~~vryvY~~~~~lYl~~iT~~n 112 (359)
+.||..+.+ |..| .+|.+++++|+++ ++-.+.+-+++.
T Consensus 16 aDFp~~~~elk~~gV~~Y~y~V~~G~~~y~~~--~d~~V~~~~~~~ 59 (125)
T PF07166_consen 16 ADFPQFIQELKRMGVSHYIYYVADGNTTYVGE--NDYTVSSKGNYV 59 (125)
T ss_dssp ---HHHHHHHHHH-SSEEEEETTTSEEEEE-S--SS-EEEEE-STT
T ss_pred CChHHHHHHHHhcCceEEEEEEecCcEEEEEc--CCCEEEeccccc
Confidence 378888876 6666 8888888888876 776666666543
No 34
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=23.32 E-value=3.3e+02 Score=20.54 Aligned_cols=45 Identities=16% Similarity=0.095 Sum_probs=37.4
Q ss_pred ccceEEeCCEEEEEEEcCCEEEEEEecCCccHHHHHHHHHHhhhc
Q psy16332 84 QHTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRV 128 (359)
Q Consensus 84 ~~t~ve~~~vryvY~~~~~lYl~~iT~~nsNi~~~l~~L~~l~~v 128 (359)
..-.++.++..|-|..-+++..+++|.+.-..-.-+.||..+-+-
T Consensus 15 ~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~ 59 (83)
T PF13774_consen 15 SKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQE 59 (83)
T ss_dssp SEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHH
T ss_pred CeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHH
Confidence 456677888888888899999999999999999999999887765
No 35
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=22.98 E-value=3.9e+02 Score=25.56 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=27.7
Q ss_pred EEEEEEecCccceeeeEE--EeeCCCCCCCce--eeCCceEEEeCCCCeEEEEEeeecC
Q psy16332 193 NIEYELEHEEKELNQVTI--SIPLPLHCTPNV--TECDGDYNYDARKNTLTWSLALIDS 247 (359)
Q Consensus 193 ~iEye~~~~~~~l~dV~i--~IPlp~~~~~~v--~~~dG~~~~d~~~~~L~W~I~~id~ 247 (359)
..+|++++....--+|+| .||++......| .... .-..+...+.+.|.+..-.+
T Consensus 245 ~~~itv~N~~~~~v~v~v~d~iPvs~~~~I~V~~~~~~-~~~~~~~~g~~~W~~~l~~g 302 (317)
T PF13598_consen 245 EYTITVRNNKDEPVTVTVEDQIPVSEDEDIKVELLEPP-EPNEDEKDGILEWKVTLPPG 302 (317)
T ss_pred EEEEEEECCCCCCEEEEEEeCCCCCCCceEEEEEcCCC-CCcccCCCCEEEEEEEECCC
Confidence 333344443223334666 566654444433 2221 11345677999999876544
No 36
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=20.21 E-value=1.3e+02 Score=27.31 Aligned_cols=35 Identities=14% Similarity=0.061 Sum_probs=25.6
Q ss_pred eeEEEeecCCceeEEeeccc-ccchhHHHHHHhhhhhhh
Q psy16332 42 EATKIKLKNIKIAIVSRQFV-EMTRARIEGLLAAFPKLM 79 (359)
Q Consensus 42 s~~~i~~~~Gk~~LisRq~r-di~r~~ie~~l~~F~~li 79 (359)
++++|+|++|| ++ ..+. .++.+.++.++....+|+
T Consensus 148 ~T~fVIDk~Gk-Vv--~~~~G~l~~ee~e~~~~li~~ll 183 (184)
T TIGR01626 148 SAIIVLDKTGK-VK--FVKEGALSDSDIQTVISLVNGLL 183 (184)
T ss_pred ceEEEECCCCc-EE--EEEeCCCCHHHHHHHHHHHHHHh
Confidence 34589999999 43 4555 889998887776666654
Done!