Query psy16332
Match_columns 359
No_of_seqs 231 out of 574
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 18:42:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_M AP-2 complex subunit MU 100.0 3E-39 1E-43 325.5 26.4 253 40-307 1-433 (435)
2 1w63_M Adaptor-related protein 100.0 3.3E-39 1.1E-43 324.1 19.2 253 40-307 2-420 (423)
3 4en2_M AP-1 complex subunit MU 99.9 1.4E-25 4.9E-30 212.1 13.5 169 129-307 81-263 (266)
4 3l81_A AP-4 complex subunit MU 99.9 1.1E-24 3.8E-29 209.4 13.9 170 129-307 103-299 (301)
5 3ml6_A Chimeric complex betwee 99.9 1.2E-24 4.1E-29 215.6 14.5 169 129-307 198-383 (385)
6 1i31_A Clathrin coat assembly 99.9 1.2E-24 4.2E-29 210.4 13.0 169 129-307 127-312 (314)
7 1i31_A Clathrin coat assembly 99.8 4.4E-19 1.5E-23 171.4 13.6 220 129-359 3-279 (314)
8 4en2_M AP-1 complex subunit MU 99.7 8.6E-18 2.9E-22 158.8 11.5 186 163-359 1-234 (266)
9 3ml6_A Chimeric complex betwee 99.7 4.1E-16 1.4E-20 154.4 18.2 180 169-359 120-350 (385)
10 2vgl_M AP-2 complex subunit MU 99.7 8.3E-16 2.8E-20 154.6 20.0 194 155-359 152-400 (435)
11 2vgl_S AP-2 complex subunit si 99.7 1.3E-16 4.4E-21 137.1 11.9 88 40-128 1-90 (142)
12 1w63_Q Adapter-related protein 99.7 9.3E-17 3.2E-21 140.5 10.6 88 40-128 1-90 (158)
13 3l81_A AP-4 complex subunit MU 99.7 5E-16 1.7E-20 149.1 15.9 197 151-358 11-267 (301)
14 1w63_M Adaptor-related protein 99.7 2.6E-16 9E-21 157.6 11.9 192 157-359 152-391 (423)
15 3tjz_C Coatomer subunit zeta-1 99.2 7.1E-11 2.4E-15 102.6 11.3 89 35-128 7-100 (153)
16 3g9h_A Suppressor of yeast pro 96.6 0.026 8.8E-07 54.1 13.3 114 157-276 152-277 (328)
17 3cpt_A Mitogen-activated prote 89.6 2.1 7.2E-05 36.1 9.2 79 42-121 39-125 (143)
18 3g9h_A Suppressor of yeast pro 80.8 40 0.0014 32.1 15.9 168 177-355 77-280 (328)
19 2zf9_A SCAE cell-surface ancho 79.2 1.3 4.3E-05 38.4 3.2 32 326-357 125-157 (194)
20 2j3w_A Sedlin, trafficking pro 69.8 15 0.00052 30.4 7.6 73 35-111 2-91 (142)
21 3kyq_A YKT6, synaptobrevin hom 47.9 1.3E+02 0.0045 26.1 10.1 95 44-138 7-111 (199)
22 1j3w_A Giding PROTEIN-MGLB; gl 31.7 2.3E+02 0.0078 23.7 10.4 81 45-127 33-127 (163)
23 4b93_A Vesicle-associated memb 30.8 2.1E+02 0.0073 24.4 8.6 43 86-128 44-86 (189)
24 1vet_B P14, late endosomal/lys 27.7 2.3E+02 0.0079 22.5 11.8 82 45-127 23-113 (125)
25 2vgl_S AP-2 complex subunit si 27.5 22 0.00075 29.1 1.5 30 8-37 97-126 (142)
26 2vx8_A Nucleoporin-like protei 27.5 2.8E+02 0.0095 23.4 10.1 44 86-129 86-129 (169)
27 3leq_A Uncharacterized protein 23.7 2.7E+02 0.0094 22.0 9.9 82 45-127 23-114 (126)
28 3bw6_A Synaptobrevin homolog Y 23.1 3E+02 0.01 22.3 10.0 90 36-129 5-105 (144)
No 1
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=3e-39 Score=325.45 Aligned_cols=253 Identities=17% Similarity=0.259 Sum_probs=202.6
Q ss_pred eceeEEEeecCCceeEEeeccc-ccchhHHHHHHhhhhhhhcC---CCccceEEeCCEEEEEEEcCCEEEEEEecCCccH
Q psy16332 40 AQEATKIKLKNIKIAIVSRQFV-EMTRARIEGLLAAFPKLMSS---GKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNI 115 (359)
Q Consensus 40 ~~s~~~i~~~~Gk~~LisRq~r-di~r~~ie~~l~~F~~li~~---~~~~t~ve~~~vryvY~~~~~lYl~~iT~~nsNi 115 (359)
|++|++|+|++|| ++|+|+|| +++|+.++ .|++++.+ ..+||+++.++++|+|+++++||++++|++|+|.
T Consensus 1 MI~~i~I~~~~Gk-~~l~k~y~~~~~~~~~~----~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~ 75 (435)
T 2vgl_M 1 MIGGLFIYNHKGE-VLISRVYRDDIGRNAVD----AFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNA 75 (435)
T ss_dssp CCCEEEEECTTCC-EEEEEECSSSCCHHHHH----HHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCH
T ss_pred CeEEEEEECCCCC-EEEEEecCCCCChhHHH----HHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 5689999999999 99999999 89987666 89998875 2688999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc-------------------------------------------------------------------
Q psy16332 116 LEDLETLRLFSRV------------------------------------------------------------------- 128 (359)
Q Consensus 116 ~~~l~~L~~l~~v------------------------------------------------------------------- 128 (359)
+++|+|||+|+++
T Consensus 76 l~~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 155 (435)
T 2vgl_M 76 AMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQV 155 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcccccccccccccccccccccc
Confidence 9999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy16332 129 -------------------------------------------------------------------------------- 128 (359)
Q Consensus 129 -------------------------------------------------------------------------------- 128 (359)
T Consensus 156 ~~~i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~ 235 (435)
T 2vgl_M 156 TGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSK 235 (435)
T ss_dssp ---CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC-------------
T ss_pred ccccccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhcccccccccccccc
Confidence
Q ss_pred ------------cCcccchhhhccccEEEecCCCCCCCCCCCeeeEEEeecCCCCcccceEEEEeeCCCCCCceEEEEEE
Q psy16332 129 ------------THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEY 196 (359)
Q Consensus 129 ------------tHP~VdK~~f~~~~ii~~k~~~k~Fp~~~~~gvlkWR~~~~~e~~lPlsV~~w~s~~~~~~~~v~iEy 196 (359)
||||||+++|+++++|+|+||||+|++ |+||+.+. ..+|++|+||++..|+ +++.+++
T Consensus 236 ~~~~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~L------m~Yr~~~~--~~~P~~i~~~~~~~~~--~~ve~~l 305 (435)
T 2vgl_M 236 SGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFEL------MRYRTTKD--IILPFRVIPLVREVGR--TKLEVKV 305 (435)
T ss_dssp ----CCCCCEEEECTTEEEC-----CCEEECCCSEEEEE------EEEEECSS--CCCSEEEEEEEECCTT--TEEEEEE
T ss_pred cccCceEccccccceeecHhHhccCceEEEECCCCcEEE------EEEEecCC--cCCCeEEEEEEEecCC--CEEEEEE
Confidence 299999999999999999999999976 99999863 5689999999997653 3443444
Q ss_pred EEecCc---cceeeeEEEeeCCCC-CCCceeeCCceEEEeCCCCeEEEEEeeecCCC---ceeEEEEEeec-CCCCCccc
Q psy16332 197 ELEHEE---KELNQVTISIPLPLH-CTPNVTECDGDYNYDARKNTLTWSLALIDSSN---KSGALEFSAPS-ASQSDFFP 268 (359)
Q Consensus 197 e~~~~~---~~l~dV~i~IPlp~~-~~~~v~~~dG~~~~d~~~~~L~W~I~~id~~~---~sgsleFsv~~-~d~d~~fP 268 (359)
.++..+ ..++||.|.||+|+. ..+.+.+.+|+++|++..+.+.|+|++++++. -+|+++|.... .+++.++|
T Consensus 306 ~~~~~~~~~~~~~~V~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~~~~~~~~~p 385 (435)
T 2vgl_M 306 VIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPP 385 (435)
T ss_dssp EEEECSCTTSEEEEEEEEEECCSSCCCEEEEESSSEEEEETTTTEEEEEEEEEETTCEEEEEEEEECCCCSCSCCCCCCC
T ss_pred EEeCCCCCCceeeEEEEEEECCCCCCCceEEecceeEEEccCCCEEEEEeccCCCCCCEEEEEEEEecCCCcCcccCCCc
Confidence 443332 469999999999984 58888999999999999999999999998741 13555553322 34567999
Q ss_pred EEEEEEeccceeeeEEEEeeccc-------ccCCCceeee--cceEEE
Q psy16332 269 LQVSFSCNQSYANIKIFIEKLFL-------LHCTPNVTEC--DGDYNY 307 (359)
Q Consensus 269 I~V~F~~~~s~s~v~V~iP~~~~-------~~~~P~V~~~--dG~y~y 307 (359)
|+|+|+++.+++|++|..=+..- -...++|++. .|+|++
T Consensus 386 i~v~F~i~~t~Sgl~V~~l~v~~~~~~~~~y~~~kwVrY~t~sg~y~~ 433 (435)
T 2vgl_M 386 ISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYET 433 (435)
T ss_dssp EEEEEEESSCTTCCCEEEEEEECSSSSCBGGGSEEEEEEEEEEEEEEE
T ss_pred EEEEEEEEecccccEEEEEEEeccccccCCCCCcCceEEEEeCCeEEE
Confidence 99999999999999988754321 1235777765 466654
No 2
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=3.3e-39 Score=324.10 Aligned_cols=253 Identities=18% Similarity=0.294 Sum_probs=203.1
Q ss_pred eceeEEEeecCCceeEEeeccc-ccchhHHHHHHhhhhhhhcC----CCccceEEeCCEEEEEEEcCCEEEEEEecCCcc
Q psy16332 40 AQEATKIKLKNIKIAIVSRQFV-EMTRARIEGLLAAFPKLMSS----GKQHTFVETDSVRYVYQPLEKLYMLLITTKTSN 114 (359)
Q Consensus 40 ~~s~~~i~~~~Gk~~LisRq~r-di~r~~ie~~l~~F~~li~~----~~~~t~ve~~~vryvY~~~~~lYl~~iT~~nsN 114 (359)
|++|++|+|++|| ++|+|+|| +++|+.++ .|++++.+ +.+||+++.++++|+|+++++||++++|++|+|
T Consensus 2 MI~~i~I~~~~Gk-~~l~k~y~~~~~~~~~~----~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n 76 (423)
T 1w63_M 2 SASAVYVLDLKGK-VLICRNYRGDVDMSEVE----HFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNAC 76 (423)
T ss_dssp CCCEEEEEETTTE-ECSCBCCSCSCTTTTHH----HHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCC
T ss_pred ceEEEEEECCCCC-EEEEEecCCCCChHHHH----HHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCC
Confidence 6788999999999 99999999 89986554 89999863 468999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhc------------------------------------------------------------------
Q psy16332 115 ILEDLETLRLFSRV------------------------------------------------------------------ 128 (359)
Q Consensus 115 i~~~l~~L~~l~~v------------------------------------------------------------------ 128 (359)
++++|+|||+|+++
T Consensus 77 ~l~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 156 (423)
T 1w63_M 77 VSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNA 156 (423)
T ss_dssp THHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCCCCCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCccccccccCCcccccCC
Confidence 99999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy16332 129 -------------------------------------------------------------------------------- 128 (359)
Q Consensus 129 -------------------------------------------------------------------------------- 128 (359)
T Consensus 157 i~wr~~g~~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~~~~~~~v~l~d~ 236 (423)
T 1w63_M 157 VSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDV 236 (423)
T ss_dssp CCSSCSSCCCSSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEECSSCCEEEEEECSCC-------------CEEEE
T ss_pred CCccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEeCCCCeEEEEECCccccccccccccCceEcccc
Confidence
Q ss_pred -cCcccchhhhccccEEEecCCCCCCCCCCCeeeEEEeecCCCCcccceEEEEeeCCCCCCceEEEEEEEEecCc---cc
Q psy16332 129 -THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEHEE---KE 204 (359)
Q Consensus 129 -tHP~VdK~~f~~~~ii~~k~~~k~Fp~~~~~gvlkWR~~~~~e~~lPlsV~~w~s~~~~~~~~v~iEye~~~~~---~~ 204 (359)
||||||+++|+++++|+|+||||+|++ |+||+.+. ..+|++++||++..+ ++++.++++++..+ ..
T Consensus 237 ~fHpcV~~~~f~~~r~isf~PPdg~F~L------m~Yr~~~~--~~~P~~i~~~~~~~~--~~~ve~~l~~~~~~~~~~~ 306 (423)
T 1w63_M 237 KFHQCVRLSRFENDRTISFIPPDGEFEL------MSYRLNTH--VKPLIWIESVIEKHS--HSRIEYMVKAKSQFKRRST 306 (423)
T ss_dssp EECTTEEESSSSSCCEEEECCCSEEEEE------EEEEEECC--CCCTTCCEEEEEEET--TTEEEEEEEEECCSCTTSE
T ss_pred cccccccHHHhCCCCeEEEECCCCcEEE------EEEEecCC--cCCCEEEEEEEEecC--CCEEEEEEEEcccCCCcce
Confidence 599999999999999999999999976 99999875 458999999998654 23444444444432 46
Q ss_pred eeeeEEEeeCCCC-CCCceeeCCceEEEeCCCCeEEEEEeeecCCC-ceeEEEEEeecC---CCCCcccEEEEEEec-cc
Q psy16332 205 LNQVTISIPLPLH-CTPNVTECDGDYNYDARKNTLTWSLALIDSSN-KSGALEFSAPSA---SQSDFFPLQVSFSCN-QS 278 (359)
Q Consensus 205 l~dV~i~IPlp~~-~~~~v~~~dG~~~~d~~~~~L~W~I~~id~~~-~sgsleFsv~~~---d~d~~fPI~V~F~~~-~s 278 (359)
++||.|.||+|+. ..+.+.+.+|+++|++..+.|.|+|+++++++ .+.+.+|+.... +.+.++||+|+|+++ .+
T Consensus 307 ~~~V~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~i~~~~~~~l~~~~~l~~~~~~~~~~~~pi~v~F~i~~~t 386 (423)
T 1w63_M 307 ANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFT 386 (423)
T ss_dssp EESCEEEEECCTTCCCCEEEESSSEEEEETGGGEEEEECSEEETTCEEEEEEEEEC----------CCCEEEEBCCSSCC
T ss_pred eeEEEEEEeCCCCcccceEEecCccEEEecCCCEEEEEeCcCCCCCcEEEEEEEEccCCCcccccCCCcEEEEEEECCEe
Confidence 9999999999984 58889999999999999999999999998742 234555544332 346799999999986 78
Q ss_pred eeeeEEEEeeccc---ccCCCceeee--cceEEE
Q psy16332 279 YANIKIFIEKLFL---LHCTPNVTEC--DGDYNY 307 (359)
Q Consensus 279 ~s~v~V~iP~~~~---~~~~P~V~~~--dG~y~y 307 (359)
++|++|..=+..- -...++|++. +|+|++
T Consensus 387 ~Sgl~V~~l~v~~~~~y~~~kwVrY~t~sg~y~~ 420 (423)
T 1w63_M 387 TSGIQVRYLKIIEKSGYQAIPWVRYITQNGDYQL 420 (423)
T ss_dssp TTCCCEEEEEEECSSCCCCEEEEEEEEEBSCEEE
T ss_pred CCCCEEEEEEeEccCCCCCcCceEEEEeCCcEEE
Confidence 9998888743320 0234666655 466654
No 3
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=99.93 E-value=1.4e-25 Score=212.13 Aligned_cols=169 Identities=19% Similarity=0.296 Sum_probs=133.0
Q ss_pred cCcccchhhhccccEEEecCCCCCCCCCCCeeeEEEeecCCCCcccceEEEEeeCCCCCCceEEEEEEEEecCc---cce
Q psy16332 129 THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEHEE---KEL 205 (359)
Q Consensus 129 tHP~VdK~~f~~~~ii~~k~~~k~Fp~~~~~gvlkWR~~~~~e~~lPlsV~~w~s~~~~~~~~v~iEye~~~~~---~~l 205 (359)
||||||++.|+++++|+|+||||+|++ |+||++.. ..+|++|+||+++.+ .+.+.++++++.++ ..+
T Consensus 81 fH~cV~~~~f~~~r~i~f~PPdg~F~L------m~yr~~~~--~~~Pi~i~~~~~~~~--~~~vei~v~~k~~~~~~~~~ 150 (266)
T 4en2_M 81 FHQCVRLSRFENDRTISFIPPDGEFEL------MSYRLNTH--VKPLIWIESVIEKHS--HSRIEYMVKAKSQFKRRSTA 150 (266)
T ss_dssp ECTTBCHHHHHHHCCCEECCCSEEEEE------EEEEECCC--CCCSEEEEEEEEEEE--TTEEEEEEEEEECBCTTCEE
T ss_pred cccccCHhHccccceEEEeCCCCceEE------EEEEecCC--CCCCEEEEEEEecCC--CEEEEEEEEEecCCCCCcEE
Confidence 999999999999999999999999975 99999865 358999999998765 34555555554432 479
Q ss_pred eeeEEEeeCCCC-CCCceeeCCceEEEeCCCCeEEEEEeeecCCC-ceeEEEEEeecC---CCCCcccEEEEEEec-cce
Q psy16332 206 NQVTISIPLPLH-CTPNVTECDGDYNYDARKNTLTWSLALIDSSN-KSGALEFSAPSA---SQSDFFPLQVSFSCN-QSY 279 (359)
Q Consensus 206 ~dV~i~IPlp~~-~~~~v~~~dG~~~~d~~~~~L~W~I~~id~~~-~sgsleFsv~~~---d~d~~fPI~V~F~~~-~s~ 279 (359)
+||.|.||+|+. ..|.+.+.+|+++|+++.+.|.|+|+++++++ .+++.+|++++. +.+.++||+|+|+++ .++
T Consensus 151 ~nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~lvW~I~~~~g~~e~~l~~~~~l~s~~~~~~~~~~pI~v~F~ip~~t~ 230 (266)
T 4en2_M 151 NNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTT 230 (266)
T ss_dssp EEEEEEEECCTTCEEEEEEESSSEEEEETTTTEEEEEEEEEESSCEEEEEEEEEC----------CCCEEEEEEEESEES
T ss_pred EEEEEEECCCCCcCcceEEecCceEEEeccCCEEEEEEeeECCCcceEEEEEEEeCCCCCCCcccCCcEEEEEEeCCcee
Confidence 999999999994 48889999999999999999999999998753 468888887653 456799999999997 899
Q ss_pred eeeEEEEeecccc---cCCCceeee--cceEEE
Q psy16332 280 ANIKIFIEKLFLL---HCTPNVTEC--DGDYNY 307 (359)
Q Consensus 280 s~v~V~iP~~~~~---~~~P~V~~~--dG~y~y 307 (359)
+|++|..=+..-. ...++|++. +|+|.+
T Consensus 231 SGl~V~~L~v~e~~~y~~~kwVrY~T~sg~y~~ 263 (266)
T 4en2_M 231 SGIQVRYLKIIEKSGYQALPWVRYITQNGDYQL 263 (266)
T ss_dssp SCCCEEEEEEECSSCCCEEEEEEEEEECSSEEE
T ss_pred CCcEEEEEEeeccCCCCCCCCEEEEEeCCCEEE
Confidence 9999987543200 235788777 477764
No 4
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=209.40 Aligned_cols=170 Identities=16% Similarity=0.295 Sum_probs=134.4
Q ss_pred cCcccchhhhccccEEEecCCCCCCCCCCCeeeEEEeecCCCCcccceEEEEeeCCCCCCceEEEEEEEEecCc---cce
Q psy16332 129 THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEHEE---KEL 205 (359)
Q Consensus 129 tHP~VdK~~f~~~~ii~~k~~~k~Fp~~~~~gvlkWR~~~~~e~~lPlsV~~w~s~~~~~~~~v~iEye~~~~~---~~l 205 (359)
||||||+++|+++++|+|+||||+|++ |+||+....+..+||.++||++..+ +++++.++++++..+ ..+
T Consensus 103 fH~cV~~~~f~~~r~IsFiPPDg~F~L------m~Yr~~~~~~~~~P~~v~~~v~~~~-~~~~ie~~l~l~~~f~~~~~~ 175 (301)
T 3l81_A 103 FHSSVNLDEFESHRILRLQPPQGELTV------MRYQLSDDLPSPLPFRLFPSVQWDR-GSGRLQVYLKLRCDLLSKSQA 175 (301)
T ss_dssp EETTCBCTTHHHHCEEEECCCSEEEEE------EEEEECSCCSSCCSEEEEEEEEECT-TTSEEEEEEEEEECSCTTCEE
T ss_pred cccccChhHccccceEEecCCCCeeEE------EEEEecCCCccCCCEEEEEEEEECC-CcEEEEEEEEEecCCCCCcEE
Confidence 999999999999999999999999975 9999988766679999999999876 345666666655443 579
Q ss_pred eeeEEEeeCCCCC-CCc--eeeCCceEEEeCCCCeEEEEEeeecCC-CceeEEEEEeecC-C-----------CCCcccE
Q psy16332 206 NQVTISIPLPLHC-TPN--VTECDGDYNYDARKNTLTWSLALIDSS-NKSGALEFSAPSA-S-----------QSDFFPL 269 (359)
Q Consensus 206 ~dV~i~IPlp~~~-~~~--v~~~dG~~~~d~~~~~L~W~I~~id~~-~~sgsleFsv~~~-d-----------~d~~fPI 269 (359)
+||.|.||+|+.. .+. +.+.+|+++| +.+.|.|+|++++++ +.+++++|+++.. + .+.++||
T Consensus 176 ~nV~I~IPvP~~~~~~~~~~~~~~G~~~y--~~~~lvW~I~~~~g~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~PI 253 (301)
T 3l81_A 176 LNVRLHLPLPRGVVSLSQELSSPEQKAEL--AEGALRWDLPRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPA 253 (301)
T ss_dssp EEEEEEEECCTTCEEEEEEESSTTCEEEE--ETTEEEEEECCEETTCEEEEEEEEECCCCCC------------CCCCCE
T ss_pred EEEEEEEcCCCCcccceEEEeecCceEEE--eCcEEEEEEeeECCCcEEeEEEEEEecCCccccccccccccccccCCCE
Confidence 9999999999854 666 6688999999 778999999999874 3467888877642 2 3469999
Q ss_pred EEEEEec-cceeeeEEEEeeccc-----ccCCCceeee--cceEEE
Q psy16332 270 QVSFSCN-QSYANIKIFIEKLFL-----LHCTPNVTEC--DGDYNY 307 (359)
Q Consensus 270 ~V~F~~~-~s~s~v~V~iP~~~~-----~~~~P~V~~~--dG~y~y 307 (359)
+|+|+++ .+++|++|+.=+..- -...++|++. +|+|++
T Consensus 254 ~v~F~ip~~t~SGl~Vr~L~v~e~~~~~y~~~kwVRYiT~sg~Y~~ 299 (301)
T 3l81_A 254 SLSFELPRHTCSGLQVRFLRLAFRPSGNANPHKWVRHLSHSDAYVI 299 (301)
T ss_dssp EEEEEEETCCSSCCCEEEEEEEC-------CEEEEEEEEEEEEEEE
T ss_pred EEEEEeCCccccCcEEEEEEEecccccCCCCccceEEEEeCCcEEE
Confidence 9999997 899999998743210 1345778776 476664
No 5
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=99.92 E-value=1.2e-24 Score=215.59 Aligned_cols=169 Identities=19% Similarity=0.296 Sum_probs=138.3
Q ss_pred cCcccchhhhccccEEEecCCCCCCCCCCCeeeEEEeecCCCCcccceEEEEeeCCCCCCceEEEEEEEEecCc---cce
Q psy16332 129 THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEHEE---KEL 205 (359)
Q Consensus 129 tHP~VdK~~f~~~~ii~~k~~~k~Fp~~~~~gvlkWR~~~~~e~~lPlsV~~w~s~~~~~~~~v~iEye~~~~~---~~l 205 (359)
||||||++.|+++++|+|+||||+|++ |+||+.. ++.+|++|+||+++.+ .+.+.++++++..+ ..+
T Consensus 198 FH~CV~l~~f~~~r~IsFiPPDg~F~L------m~Yr~~~--~~~~Pf~i~~~v~~~~--~~~vei~v~lk~~f~~~~~~ 267 (385)
T 3ml6_A 198 FHQCVRLSKFDSERSISFIPPDGEFEL------MRYRTTK--DIILPFRVIPLVREVG--RTKLEVKVVIKSNFKPSLLA 267 (385)
T ss_dssp ECTTBCCCCSSSCSEEEECCCSEEEEE------EEEEECS--SCCCSEEEEEEEEEET--TTEEEEEEEEEECSCTTCCE
T ss_pred cccccChhHccccceEEEeCCCCceEE------EEEEcCC--CCCCCEEEEEEEEeCC--CeEEEEEEEEeecCCCcceE
Confidence 999999999999999999999999976 9999875 3558999999999876 35666666665442 579
Q ss_pred eeeEEEeeCCCC-CCCceeeCCceEEEeCCCCeEEEEEeeecCC-CceeEEEEEeecC---CCCCcccEEEEEEecccee
Q psy16332 206 NQVTISIPLPLH-CTPNVTECDGDYNYDARKNTLTWSLALIDSS-NKSGALEFSAPSA---SQSDFFPLQVSFSCNQSYA 280 (359)
Q Consensus 206 ~dV~i~IPlp~~-~~~~v~~~dG~~~~d~~~~~L~W~I~~id~~-~~sgsleFsv~~~---d~d~~fPI~V~F~~~~s~s 280 (359)
+||+|.||+|+. ..+.+.+.+|+++|+++.+.|.|+|++++++ +.+++.+|++.+. +.+.++||+|+|+++.+++
T Consensus 268 ~nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~lvW~I~k~~g~~e~~l~~~~~l~~~~~~~~~~~~PI~v~F~Ip~t~S 347 (385)
T 3ml6_A 268 QKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPS 347 (385)
T ss_dssp EEEEEEEECCTTEEEEEEEESSSEEEEEGGGTEEEEEEEEECSSEEEEEEEEEEECCCSSCCSCCCCCEEEEEEESSCTT
T ss_pred EEEEEEecCCCCcccceEEecCceEEEeccCcEEEEEeeeECCCcceEEEEEEEECCCCCCccccCCCEEEEEEEecccc
Confidence 999999999995 4788999999999999999999999999874 4568899988652 3467999999999999999
Q ss_pred eeEEEEeeccc-------ccCCCceeee--cceEEE
Q psy16332 281 NIKIFIEKLFL-------LHCTPNVTEC--DGDYNY 307 (359)
Q Consensus 281 ~v~V~iP~~~~-------~~~~P~V~~~--dG~y~y 307 (359)
|++|..=+..- -...++|++. +|+|.+
T Consensus 348 Gl~Vr~L~v~e~~~~~~~y~~~kwVRYiT~sg~Y~~ 383 (385)
T 3ml6_A 348 GLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYET 383 (385)
T ss_dssp CCCEEEEEEECSSSCCCGGGCEEEEEECEEEEEEEE
T ss_pred CCEEEEEEEecccCcccCCCccccEEEEEECCCEEe
Confidence 99998754310 1346788776 477654
No 6
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=99.91 E-value=1.2e-24 Score=210.37 Aligned_cols=169 Identities=20% Similarity=0.316 Sum_probs=126.6
Q ss_pred cCcccchhhhccccEEEecCCCCCCCCCCCeeeEEEeecCCCCcccceEEEEeeCCCCCCceEEEEEEEEecCc---cce
Q psy16332 129 THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEHEE---KEL 205 (359)
Q Consensus 129 tHP~VdK~~f~~~~ii~~k~~~k~Fp~~~~~gvlkWR~~~~~e~~lPlsV~~w~s~~~~~~~~v~iEye~~~~~---~~l 205 (359)
||||||+++|+++++|+|+||||.|++ |+||+.. +..+|++|+||++..++ +++.+++.++..+ ..+
T Consensus 127 FHpcV~l~~f~~~r~IsFiPPDG~F~L------m~Yr~~~--~~~lP~~v~~~~~~~g~--~~iE~~l~~~~~~~~~~~~ 196 (314)
T 1i31_A 127 FHQCVRLSKFDSERSISFIPPDGEFEL------MRYRTTK--DIILPFRVIPLVREVGR--TKLEVKVVIKSNFKPSLLA 196 (314)
T ss_dssp ECTTSBCC----CCCEEECCCSEEEEE------EEEEECS--SCCCCEEEEEEEEEETT--TEEEEEEEEEECSCTTCEE
T ss_pred ccccccHHHcCCcceEEEECCCCCeEE------EEEEecC--CcCCCEEEEEEEEecCC--cEEEEEEEEccCCCCccee
Confidence 999999999999999999999999976 9999986 45689999999997653 3333333333322 469
Q ss_pred eeeEEEeeCCCC-CCCceeeCCceEEEeCCCCeEEEEEeeecCC---CceeEEEEEeec-CCCCCcccEEEEEEecccee
Q psy16332 206 NQVTISIPLPLH-CTPNVTECDGDYNYDARKNTLTWSLALIDSS---NKSGALEFSAPS-ASQSDFFPLQVSFSCNQSYA 280 (359)
Q Consensus 206 ~dV~i~IPlp~~-~~~~v~~~dG~~~~d~~~~~L~W~I~~id~~---~~sgsleFsv~~-~d~d~~fPI~V~F~~~~s~s 280 (359)
+||.|.||+|+. ..+.+.+.+|+++|++..+.|.|+|++++++ +-+|+++|.... .+.+.++||+|+|+++.+++
T Consensus 197 ~nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~i~g~~e~~l~~~~~l~s~~~~~~~~~~pi~v~F~ip~t~S 276 (314)
T 1i31_A 197 QKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPS 276 (314)
T ss_dssp EEEEEEEECCTTEEEEEEECSSSEEEEEGGGTEEEEEEEEEESSEEEEEEEEEEECCCCSSSCCCCCCEEEEEEESSCTT
T ss_pred eEEEEEEECCCCcccceEEecCceEEEecCCCEEEEEeCcCCCCCcEEEEEEEEecCCCcCCccCCCcEEEEEEEeeccc
Confidence 999999999985 4788899999999999999999999999874 224566664322 34567999999999999999
Q ss_pred eeEEEEeeccc-------ccCCCceeee--cceEEE
Q psy16332 281 NIKIFIEKLFL-------LHCTPNVTEC--DGDYNY 307 (359)
Q Consensus 281 ~v~V~iP~~~~-------~~~~P~V~~~--dG~y~y 307 (359)
|++|..=+..- -...++|++. .|+|++
T Consensus 277 gl~V~~l~v~e~~~~~~~y~~~kwVrYit~sg~y~~ 312 (314)
T 1i31_A 277 GLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYET 312 (314)
T ss_dssp CCCEEEEEEECSSSSCCGGGCEEEEEEEEEEEEEEE
T ss_pred CcEEEEEEEeccccccCCCCccCceEEEEeCCeEEE
Confidence 99988754321 1245777765 466654
No 7
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=99.79 E-value=4.4e-19 Score=171.42 Aligned_cols=220 Identities=13% Similarity=0.195 Sum_probs=135.3
Q ss_pred cCcccchhhhccccEEEecC--CCCCCCCCCCeeeEEEeecC----CCCcccce--EEEEeeCCCCCC-ceEEEEEEEEe
Q psy16332 129 THPNVDKELFKSKTEIGLKN--PSKPFPLNNDIGVLKWRFTS----TDESCLPL--SINCWPSDNGSG-GCDVNIEYELE 199 (359)
Q Consensus 129 tHP~VdK~~f~~~~ii~~k~--~~k~Fp~~~~~gvlkWR~~~----~~e~~lPl--sV~~w~s~~~~~-~~~v~iEye~~ 199 (359)
|+|++.|+++.++++..-.. ....-++.+.++.+.||..+ .||.++++ +|++.++.+|.. +++|.+++.++
T Consensus 3 te~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~eV~G~I~~~ 82 (314)
T 1i31_A 3 SETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMK 82 (314)
T ss_dssp -----------------------------------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEEEEEEEEEEE
T ss_pred CChHHHHHhhcCCCeeccccccccccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEE
Confidence 78999999998888754110 11224556788899999776 39999999 999999988754 78899998873
Q ss_pred c--------------C--------------------ccceeeeEE--EeeCCC-CCCCce--eeCCceEEEeCCCCeEEE
Q psy16332 200 H--------------E--------------------EKELNQVTI--SIPLPL-HCTPNV--TECDGDYNYDARKNTLTW 240 (359)
Q Consensus 200 ~--------------~--------------------~~~l~dV~i--~IPlp~-~~~~~v--~~~dG~~~~d~~~~~L~W 240 (359)
. . ...++|+.| ||.+.. +.+..+ +++||+|+ .|+|
T Consensus 83 ~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPDG~F~------Lm~Y 156 (314)
T 1i31_A 83 SYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFE------LMRY 156 (314)
T ss_dssp EECSSSCEEEEEESCCC-----------------CCCCCCSEEEECTTSBCC----CCCEEECCCSEEEE------EEEE
T ss_pred EEcCCCCeEEEEECCchhccccccccccccccccCCceEcccccccccccHHHcCCcceEEEECCCCCeE------EEEE
Confidence 3 0 134679999 999977 544444 99999986 5899
Q ss_pred EEeeecCCCceeEEEEEeecCCCC-CcccEEEEEEe----ccceeeeEEEEeecccccCCCceeeecceEEEeCCCCEEE
Q psy16332 241 SLALIDSSNKSGALEFSAPSASQS-DFFPLQVSFSC----NQSYANIKIFIEKLFLLHCTPNVTECDGDYNYDARKNTLT 315 (359)
Q Consensus 241 ~I~~id~~~~sgsleFsv~~~d~d-~~fPI~V~F~~----~~s~s~v~V~iP~~~~~~~~P~V~~~dG~y~y~~~~~~l~ 315 (359)
++.. +...++.+.++..+.. ..+-+.+.-+. ...+.+|.|.+|.|. +...|.+...+|+++|++.+++|+
T Consensus 157 r~~~----~~~lP~~v~~~~~~~g~~~iE~~l~~~~~~~~~~~~~nV~I~IP~P~-~~~~~~~~~~~G~~~y~~~~~~l~ 231 (314)
T 1i31_A 157 RTTK----DIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPL-NTSGVQVICMKGKAKYKASENAIV 231 (314)
T ss_dssp EECS----SCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEEEEEEEEECCT-TEEEEEEECSSSEEEEEGGGTEEE
T ss_pred EecC----CcCCCEEEEEEEEecCCcEEEEEEEEccCCCCcceeeEEEEEEECCC-CcccceEEecCceEEEecCCCEEE
Confidence 8853 2344666665553221 22222222222 245899999999988 677889998899999999999999
Q ss_pred EEEeeEcCCC---CeEEEEEEccC-CCCCCccceEEEEeeceeccccC
Q psy16332 316 WSLALIDSSN---KSGALEFSAPS-ASQSDFFPLQVSFSCNQSYANIK 359 (359)
Q Consensus 316 W~I~~i~~~~---~sgs~eF~~~~-~~~~~fFPi~V~F~s~~~~~~~~ 359 (359)
|+|+.+++++ .+|+++|..++ .+++.+|||+|+|+...++++++
T Consensus 232 W~I~~i~g~~e~~l~~~~~l~s~~~~~~~~~~pi~v~F~ip~t~Sgl~ 279 (314)
T 1i31_A 232 WKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLK 279 (314)
T ss_dssp EEEEEEESSEEEEEEEEEEECCCCSSSCCCCCCEEEEEEESSCTTCCC
T ss_pred EEeCcCCCCCcEEEEEEEEecCCCcCCccCCCcEEEEEEEeecccCcE
Confidence 9999999874 45555544432 44566999999999987777764
No 8
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=99.73 E-value=8.6e-18 Score=158.82 Aligned_cols=186 Identities=17% Similarity=0.239 Sum_probs=136.5
Q ss_pred EEeecCC----CCcccce--EEEEeeCCCCCC-ceEEEEEEEEecC--------------------------ccceeeeE
Q psy16332 163 KWRFTST----DESCLPL--SINCWPSDNGSG-GCDVNIEYELEHE--------------------------EKELNQVT 209 (359)
Q Consensus 163 kWR~~~~----~e~~lPl--sV~~w~s~~~~~-~~~v~iEye~~~~--------------------------~~~l~dV~ 209 (359)
.||..+. +|.++++ +|++.++.+|.. .++|.+++.++.. ...++|+.
T Consensus 1 ~WR~~~i~y~~nei~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~~~~~~~~~~~l~d~~ 80 (266)
T 4en2_M 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVK 80 (266)
T ss_dssp CCCCTTCCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHHTTCTTSCCBCCEEEE
T ss_pred CCcCCCCccccCeEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCccccccccccccCccCccccc
Confidence 3887774 8999999 999999988753 7889988887431 01367888
Q ss_pred E--EeeCCC-CC--CCceeeCCceEEEeCCCCeEEEEEeeecCCCceeEEEEEeecCCC-CCcccEEEEEEe----ccce
Q psy16332 210 I--SIPLPL-HC--TPNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQ-SDFFPLQVSFSC----NQSY 279 (359)
Q Consensus 210 i--~IPlp~-~~--~~~v~~~dG~~~~d~~~~~L~W~I~~id~~~~sgsleFsv~~~d~-d~~fPI~V~F~~----~~s~ 279 (359)
| ||.+.. +. .-.+.++||.|. .|+|++.. +..-++.+.++..+. ....-++++.+. ..++
T Consensus 81 fH~cV~~~~f~~~r~i~f~PPdg~F~------Lm~yr~~~----~~~~Pi~i~~~~~~~~~~~vei~v~~k~~~~~~~~~ 150 (266)
T 4en2_M 81 FHQCVRLSRFENDRTISFIPPDGEFE------LMSYRLNT----HVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTA 150 (266)
T ss_dssp ECTTBCHHHHHHHCCCEECCCSEEEE------EEEEEECC----CCCCSEEEEEEEEEEETTEEEEEEEEEECBCTTCEE
T ss_pred cccccCHhHccccceEEEeCCCCceE------EEEEEecC----CCCCCEEEEEEEecCCCEEEEEEEEEecCCCCCcEE
Confidence 8 888755 33 445599999986 58898743 123455565554322 234444555444 3468
Q ss_pred eeeEEEEeecccccCCCceeeecceEEEeCCCCEEEEEEeeEcCCC-CeEEEEEEccCC---CCCCccceEEEEeec-ee
Q psy16332 280 ANIKIFIEKLFLLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSN-KSGALEFSAPSA---SQSDFFPLQVSFSCN-QS 354 (359)
Q Consensus 280 s~v~V~iP~~~~~~~~P~V~~~dG~y~y~~~~~~l~W~I~~i~~~~-~sgs~eF~~~~~---~~~~fFPi~V~F~s~-~~ 354 (359)
.+|.|.+|.|. ++..|.+...+|+++|++++++|+|+|+.|++++ +++++||++++. +.+.++||+|+|+-. .+
T Consensus 151 ~nV~I~IP~P~-~~~~~~~~~~~G~~~y~~~~~~lvW~I~~~~g~~e~~l~~~~~l~s~~~~~~~~~~pI~v~F~ip~~t 229 (266)
T 4en2_M 151 NNVEIHIPVPN-DADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFT 229 (266)
T ss_dssp EEEEEEEECCT-TCEEEEEEESSSEEEEETTTTEEEEEEEEEESSCEEEEEEEEEC----------CCCEEEEEEEESEE
T ss_pred EEEEEEECCCC-CcCcceEEecCceEEEeccCCEEEEEEeeECCCcceEEEEEEEeCCCCCCCcccCCcEEEEEEeCCce
Confidence 99999999988 6778999999999999999999999999999988 999999999863 456699999999977 77
Q ss_pred ccccC
Q psy16332 355 YANIK 359 (359)
Q Consensus 355 ~~~~~ 359 (359)
+++++
T Consensus 230 ~SGl~ 234 (266)
T 4en2_M 230 TSGIQ 234 (266)
T ss_dssp SSCCC
T ss_pred eCCcE
Confidence 77653
No 9
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=99.70 E-value=4.1e-16 Score=154.40 Aligned_cols=180 Identities=13% Similarity=0.179 Sum_probs=136.5
Q ss_pred CCCcccce--EEEEeeCCCCCC-ceEEEEEEEEecC----------------------------------ccceeeeEE-
Q psy16332 169 TDESCLPL--SINCWPSDNGSG-GCDVNIEYELEHE----------------------------------EKELNQVTI- 210 (359)
Q Consensus 169 ~~e~~lPl--sV~~w~s~~~~~-~~~v~iEye~~~~----------------------------------~~~l~dV~i- 210 (359)
.||.++++ +|++.++.+|.. +++|.+.+.++.. ...|+|+.|
T Consensus 120 knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~~~~~~~~~~~~~~~~i~l~d~~FH 199 (385)
T 3ml6_A 120 RNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFH 199 (385)
T ss_dssp CCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSCCEEEEEECC----------------------CCCCEEEEC
T ss_pred cceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcCccccccccccccccccccccCceEccccccc
Confidence 48999999 999999988854 7889998887430 124678999
Q ss_pred -EeeCCC-CCCCce--eeCCceEEEeCCCCeEEEEEeeecCCCceeEEEEEeecCCC-CCcccEEEEEEe----ccceee
Q psy16332 211 -SIPLPL-HCTPNV--TECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQ-SDFFPLQVSFSC----NQSYAN 281 (359)
Q Consensus 211 -~IPlp~-~~~~~v--~~~dG~~~~d~~~~~L~W~I~~id~~~~sgsleFsv~~~d~-d~~fPI~V~F~~----~~s~s~ 281 (359)
||.+.. +.+..| +++||+|+ .++|++.. +...++.+.++..+. ....-+.++.+. +.++.+
T Consensus 200 ~CV~l~~f~~~r~IsFiPPDg~F~------Lm~Yr~~~----~~~~Pf~i~~~v~~~~~~~vei~v~lk~~f~~~~~~~n 269 (385)
T 3ml6_A 200 QCVRLSKFDSERSISFIPPDGEFE------LMRYRTTK----DIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQK 269 (385)
T ss_dssp TTBCCCCSSSCSEEEECCCSEEEE------EEEEEECS----SCCCSEEEEEEEEEETTTEEEEEEEEEECSCTTCCEEE
T ss_pred cccChhHccccceEEEeCCCCceE------EEEEEcCC----CCCCCEEEEEEEEeCCCeEEEEEEEEeecCCCcceEEE
Confidence 999977 545545 99999997 48888743 123455555554322 234444444443 346899
Q ss_pred eEEEEeecccccCCCceeeecceEEEeCCCCEEEEEEeeEcCCC-CeEEEEEEccC---CCCCCccceEEEEeeceeccc
Q psy16332 282 IKIFIEKLFLLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSN-KSGALEFSAPS---ASQSDFFPLQVSFSCNQSYAN 357 (359)
Q Consensus 282 v~V~iP~~~~~~~~P~V~~~dG~y~y~~~~~~l~W~I~~i~~~~-~sgs~eF~~~~---~~~~~fFPi~V~F~s~~~~~~ 357 (359)
|.|.+|.|. ++..|.+...+|+|+|++++++|+|+|+.|+++. +++++||++++ .+++.+|||+|+|+...+.++
T Consensus 270 V~I~IP~P~-~~~~~~~~~~~G~~~y~~~~~~lvW~I~k~~g~~e~~l~~~~~l~~~~~~~~~~~~PI~v~F~Ip~t~SG 348 (385)
T 3ml6_A 270 IEVRIPTPL-NTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSG 348 (385)
T ss_dssp EEEEEECCT-TEEEEEEEESSSEEEEEGGGTEEEEEEEEECSSEEEEEEEEEEECCCSSCCSCCCCCEEEEEEESSCTTC
T ss_pred EEEEecCCC-CcccceEEecCceEEEeccCcEEEEEeeeECCCcceEEEEEEEECCCCCCccccCCCEEEEEEEeccccC
Confidence 999999988 6778999999999999999999999999999975 99999999986 234569999999998877766
Q ss_pred cC
Q psy16332 358 IK 359 (359)
Q Consensus 358 ~~ 359 (359)
++
T Consensus 349 l~ 350 (385)
T 3ml6_A 349 LK 350 (385)
T ss_dssp CC
T ss_pred CE
Confidence 53
No 10
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=99.69 E-value=8.3e-16 Score=154.56 Aligned_cols=194 Identities=14% Similarity=0.213 Sum_probs=137.1
Q ss_pred CCCCeeeEEEeecC----CCCcccce--EEEEeeCCCCCC-ceEEEEEEEEec--------------C------------
Q psy16332 155 LNNDIGVLKWRFTS----TDESCLPL--SINCWPSDNGSG-GCDVNIEYELEH--------------E------------ 201 (359)
Q Consensus 155 ~~~~~gvlkWR~~~----~~e~~lPl--sV~~w~s~~~~~-~~~v~iEye~~~--------------~------------ 201 (359)
+.+..+.+.||..+ .||.++++ +|++.++.+|.. +++|.+++.++. .
T Consensus 152 ~~~~~~~i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~ 231 (435)
T 2vgl_M 152 TSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTAD 231 (435)
T ss_dssp -------CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC---------
T ss_pred ccccccccccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhcccccccccc
Confidence 34566788999875 39999999 999999988754 788988888733 0
Q ss_pred --------ccceeeeEE--EeeCCC-CCCCce--eeCCceEEEeCCCCeEEEEEeeecCCCceeEEEEEeecCCCC-Ccc
Q psy16332 202 --------EKELNQVTI--SIPLPL-HCTPNV--TECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQS-DFF 267 (359)
Q Consensus 202 --------~~~l~dV~i--~IPlp~-~~~~~v--~~~dG~~~~d~~~~~L~W~I~~id~~~~sgsleFsv~~~d~d-~~f 267 (359)
...++|++| ||.+.. +.+..+ +++||+|. .|+|++.. +...++.+.+|..+.. +.+
T Consensus 232 ~~~~~~~~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~------Lm~Yr~~~----~~~~P~~i~~~~~~~~~~~v 301 (435)
T 2vgl_M 232 ETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFE------LMRYRTTK----DIILPFRVIPLVREVGRTKL 301 (435)
T ss_dssp --------CCCCCEEEECTTEEEC-----CCEEECCCSEEEE------EEEEEECS----SCCCSEEEEEEEECCTTTEE
T ss_pred cccccccCceEccccccceeecHhHhccCceEEEECCCCcEE------EEEEEecC----CcCCCeEEEEEEEecCCCEE
Confidence 135678999 999987 444444 89999986 58999853 2345677766654332 233
Q ss_pred cEEEEEEec----cceeeeEEEEeecccccCCCceeeecceEEEeCCCCEEEEEEeeEcCCC-CeEEEEEEccC---CCC
Q psy16332 268 PLQVSFSCN----QSYANIKIFIEKLFLLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSN-KSGALEFSAPS---ASQ 339 (359)
Q Consensus 268 PI~V~F~~~----~s~s~v~V~iP~~~~~~~~P~V~~~dG~y~y~~~~~~l~W~I~~i~~~~-~sgs~eF~~~~---~~~ 339 (359)
-+.+.-+.+ ..+.+|.|.+|.|. ++..|.++..+|+++|++++++++|+|+.++++. .+.+++|++++ .++
T Consensus 302 e~~l~~~~~~~~~~~~~~V~I~IP~P~-~~~~~~~~~~~G~~~y~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~~~~~ 380 (435)
T 2vgl_M 302 EVKVVIKSNFKPSLLAQKIEVRIPTPL-NTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKK 380 (435)
T ss_dssp EEEEEEEECSCTTSEEEEEEEEEECCS-SCCCEEEEESSSEEEEETTTTEEEEEEEEEETTCEEEEEEEEECCCCSCSCC
T ss_pred EEEEEEeCCCCCCceeeEEEEEEECCC-CCCCceEEecceeEEEccCCCEEEEEeccCCCCCCEEEEEEEEecCCCcCcc
Confidence 333322222 35899999999988 6778999988999999999999999999999875 45555555544 345
Q ss_pred CCccceEEEEeeceeccccC
Q psy16332 340 SDFFPLQVSFSCNQSYANIK 359 (359)
Q Consensus 340 ~~fFPi~V~F~s~~~~~~~~ 359 (359)
+.+|||+|+|+...++++++
T Consensus 381 ~~~~pi~v~F~i~~t~Sgl~ 400 (435)
T 2vgl_M 381 WARPPISMNFEVPFAPSGLK 400 (435)
T ss_dssp CCCCCEEEEEEESSCTTCCC
T ss_pred cCCCcEEEEEEEEecccccE
Confidence 66999999999998877764
No 11
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.69 E-value=1.3e-16 Score=137.05 Aligned_cols=88 Identities=18% Similarity=0.299 Sum_probs=81.7
Q ss_pred eceeEEEeecCCceeEEeecccccchhHHHHHHhhhhhhhcC--CCccceEEeCCEEEEEEEcCCEEEEEEecCCccHHH
Q psy16332 40 AQEATKIKLKNIKIAIVSRQFVEMTRARIEGLLAAFPKLMSS--GKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILE 117 (359)
Q Consensus 40 ~~s~~~i~~~~Gk~~LisRq~rdi~r~~ie~~l~~F~~li~~--~~~~t~ve~~~vryvY~~~~~lYl~~iT~~nsNi~~ 117 (359)
|++|++|+|++|| ++++|+|+.++...-.++.+.|++++.. ++++|+++.++++|+|+++++||++++|++|+|.+.
T Consensus 1 MI~~i~i~~~~Gk-~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~ 79 (142)
T 2vgl_S 1 MIRFILIQNRAGK-TRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLA 79 (142)
T ss_dssp CEEEEEEEETTSC-EEEEEECSCCCHHHHHHHHHHHHHHHHTCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHH
T ss_pred CeEEEEEEcCCCC-EEEEEeCCCCChhhhHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHH
Confidence 4689999999999 9999999988877777788999999975 358899999999999999999999999999999999
Q ss_pred HHHHHHHhhhc
Q psy16332 118 DLETLRLFSRV 128 (359)
Q Consensus 118 ~l~~L~~l~~v 128 (359)
++++||+++++
T Consensus 80 ~le~L~~~ve~ 90 (142)
T 2vgl_S 80 YLEAIHNFVEV 90 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999998
No 12
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.68 E-value=9.3e-17 Score=140.50 Aligned_cols=88 Identities=14% Similarity=0.206 Sum_probs=78.9
Q ss_pred eceeEEEeecCCceeEEeecccccchhHHHHHHhhhhhhhcC--CCccceEEeCCEEEEEEEcCCEEEEEEecCCccHHH
Q psy16332 40 AQEATKIKLKNIKIAIVSRQFVEMTRARIEGLLAAFPKLMSS--GKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILE 117 (359)
Q Consensus 40 ~~s~~~i~~~~Gk~~LisRq~rdi~r~~ie~~l~~F~~li~~--~~~~t~ve~~~vryvY~~~~~lYl~~iT~~nsNi~~ 117 (359)
|++|++|+|++|| ++++|+||+.+..+-..+.+.|++++.. +.++|+++.++++|+|+++++||++++|++|.|.+.
T Consensus 1 MI~~i~Il~~~Gk-~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~ 79 (158)
T 1w63_Q 1 MMRFMLLFSRQGK-LRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELI 79 (158)
T ss_dssp CEEEEEEECSSSC-EEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHH
T ss_pred CeEEEEEECCCCC-EEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 4689999999999 9999999965555444577899999875 357899999999999999999999999999999999
Q ss_pred HHHHHHHhhhc
Q psy16332 118 DLETLRLFSRV 128 (359)
Q Consensus 118 ~l~~L~~l~~v 128 (359)
++++||+++++
T Consensus 80 ~le~L~~~vev 90 (158)
T 1w63_Q 80 TLELIHRYVEL 90 (158)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999998
No 13
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=99.68 E-value=5e-16 Score=149.11 Aligned_cols=197 Identities=15% Similarity=0.194 Sum_probs=129.4
Q ss_pred CCCCCCC-CeeeEEEeec--CCCCcccce--EEEEeeCCCCCC-ceEEEEEEEEecC-----------------------
Q psy16332 151 KPFPLNN-DIGVLKWRFT--STDESCLPL--SINCWPSDNGSG-GCDVNIEYELEHE----------------------- 201 (359)
Q Consensus 151 k~Fp~~~-~~gvlkWR~~--~~~e~~lPl--sV~~w~s~~~~~-~~~v~iEye~~~~----------------------- 201 (359)
|..|.++ .-.++.||.. +.||.++++ +|++.++.+|.. +++|.+.+.++..
T Consensus 11 ~~~~~~a~~~pv~~wr~~~~~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~~~~ 90 (301)
T 3l81_A 11 KVAPSSAASRPVLSSRSDQSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELR 90 (301)
T ss_dssp ----------------------CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCCTTT
T ss_pred cccCchhhcCcccccccccCCcceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcccccccccccc
Confidence 3456654 4455799953 359999999 999999988754 7889999887431
Q ss_pred ----ccceeeeEE--EeeCCC-CCCCc--eeeCCceEEEeCCCCeEEEEEeeecCCCceeEEEEEeecCCCC--CcccEE
Q psy16332 202 ----EKELNQVTI--SIPLPL-HCTPN--VTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQS--DFFPLQ 270 (359)
Q Consensus 202 ----~~~l~dV~i--~IPlp~-~~~~~--v~~~dG~~~~d~~~~~L~W~I~~id~~~~sgsleFsv~~~d~d--~~fPI~ 270 (359)
...++|+.| ||.+.. +.+.. ++++||.|+ .++|++..-. ....+|.+.+|..... ..+-+.
T Consensus 91 ~~~~~~~l~d~~fH~cV~~~~f~~~r~IsFiPPDg~F~------Lm~Yr~~~~~--~~~~P~~v~~~v~~~~~~~~ie~~ 162 (301)
T 3l81_A 91 GYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELT------VMRYQLSDDL--PSPLPFRLFPSVQWDRGSGRLQVY 162 (301)
T ss_dssp CCCSSSEESEEEEETTCBCTTHHHHCEEEECCCSEEEE------EEEEEECSCC--SSCCSEEEEEEEEECTTTSEEEEE
T ss_pred cccCceEccccccccccChhHccccceEEecCCCCeeE------EEEEEecCCC--ccCCCEEEEEEEEECCCcEEEEEE
Confidence 123678999 999877 44444 499999986 4888874321 1234666665554322 223333
Q ss_pred EEE----EeccceeeeEEEEeecccccCCCc--eeeecceEEEeCCCCEEEEEEeeEcCCC-CeEEEEEEccCC-C----
Q psy16332 271 VSF----SCNQSYANIKIFIEKLFLLHCTPN--VTECDGDYNYDARKNTLTWSLALIDSSN-KSGALEFSAPSA-S---- 338 (359)
Q Consensus 271 V~F----~~~~s~s~v~V~iP~~~~~~~~P~--V~~~dG~y~y~~~~~~l~W~I~~i~~~~-~sgs~eF~~~~~-~---- 338 (359)
+.- ....++.+|.|.+|.|. ++..|. +...+|+|+| ++++|+|+|+.|++++ .+|++||++|+. +
T Consensus 163 l~l~~~f~~~~~~~nV~I~IPvP~-~~~~~~~~~~~~~G~~~y--~~~~lvW~I~~~~g~~~~s~~~~~~l~~~~~~~~~ 239 (301)
T 3l81_A 163 LKLRCDLLSKSQALNVRLHLPLPR-GVVSLSQELSSPEQKAEL--AEGALRWDLPRVQGGSQLSGLFQMDVPGPPGPPSH 239 (301)
T ss_dssp EEEEECSCTTCEEEEEEEEEECCT-TCEEEEEEESSTTCEEEE--ETTEEEEEECCEETTCEEEEEEEEECCCCCC----
T ss_pred EEEecCCCCCcEEEEEEEEEcCCC-CcccceEEEeecCceEEE--eCcEEEEEEeeECCCcEEeEEEEEEecCCcccccc
Confidence 322 22347899999999988 566777 5567899999 7889999999999985 999999999863 2
Q ss_pred -------CCCccceEEEEeec-eecccc
Q psy16332 339 -------QSDFFPLQVSFSCN-QSYANI 358 (359)
Q Consensus 339 -------~~~fFPi~V~F~s~-~~~~~~ 358 (359)
...++||+|+|+.. .+.+++
T Consensus 240 ~~~~~~~~~~~~PI~v~F~ip~~t~SGl 267 (301)
T 3l81_A 240 GLSTSASPLGLGPASLSFELPRHTCSGL 267 (301)
T ss_dssp --------CCCCCEEEEEEEETCCSSCC
T ss_pred ccccccccccCCCEEEEEEeCCccccCc
Confidence 33599999999977 666665
No 14
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.66 E-value=2.6e-16 Score=157.64 Aligned_cols=192 Identities=16% Similarity=0.233 Sum_probs=133.7
Q ss_pred CCeeeEEEeecC----CCCcccce--EEEEeeCCCCCC-ceEEEEEEEEec--------------Cc------------c
Q psy16332 157 NDIGVLKWRFTS----TDESCLPL--SINCWPSDNGSG-GCDVNIEYELEH--------------EE------------K 203 (359)
Q Consensus 157 ~~~gvlkWR~~~----~~e~~lPl--sV~~w~s~~~~~-~~~v~iEye~~~--------------~~------------~ 203 (359)
+..+.+.||..+ .||.++++ +|++.++.+|.. +++|.+++.++. .. .
T Consensus 152 ~~~~~i~wr~~g~~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~~~~~~~v 231 (423)
T 1w63_M 152 TVTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSV 231 (423)
T ss_dssp -----CCSSCSSCCCSSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEECSSCCEEEEEECSCC-------------
T ss_pred cccCCCCccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEeCCCCeEEEEECCccccccccccccCce
Confidence 456778999765 38999999 999999987743 788888888643 10 1
Q ss_pred ceeeeEE--EeeCCC-CCCCce--eeCCceEEEeCCCCeEEEEEeeecCCCceeEEEEEeecCC-CCCcccEEEEEEe--
Q psy16332 204 ELNQVTI--SIPLPL-HCTPNV--TECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSAS-QSDFFPLQVSFSC-- 275 (359)
Q Consensus 204 ~l~dV~i--~IPlp~-~~~~~v--~~~dG~~~~d~~~~~L~W~I~~id~~~~sgsleFsv~~~d-~d~~fPI~V~F~~-- 275 (359)
.++|++| ||.+.. +.+..+ .++||+|. .++|++..- ...++.+.+|... .++.+-+.+.-+.
T Consensus 232 ~l~d~~fHpcV~~~~f~~~r~isf~PPdg~F~------Lm~Yr~~~~----~~~P~~i~~~~~~~~~~~ve~~l~~~~~~ 301 (423)
T 1w63_M 232 ELEDVKFHQCVRLSRFENDRTISFIPPDGEFE------LMSYRLNTH----VKPLIWIESVIEKHSHSRIEYMVKAKSQF 301 (423)
T ss_dssp CEEEEEECTTEEESSSSSCCEEEECCCSEEEE------EEEEEEECC----CCCTTCCEEEEEEETTTEEEEEEEEECCS
T ss_pred EcccccccccccHHHhCCCCeEEEECCCCcEE------EEEEEecCC----cCCCEEEEEEEEecCCCEEEEEEEEcccC
Confidence 4789999 999987 555555 89999986 599998542 1223333443321 1223333332222
Q ss_pred --ccceeeeEEEEeecccccCCCceeeecceEEEeCCCCEEEEEEeeEcCCC-CeEEEEEEccCC---CCCCccceEEEE
Q psy16332 276 --NQSYANIKIFIEKLFLLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSN-KSGALEFSAPSA---SQSDFFPLQVSF 349 (359)
Q Consensus 276 --~~s~s~v~V~iP~~~~~~~~P~V~~~dG~y~y~~~~~~l~W~I~~i~~~~-~sgs~eF~~~~~---~~~~fFPi~V~F 349 (359)
...+.+|.|.+|.|. ++..|.++..+|+|+|++++++|+|+|+.+++++ .+++++|++++. +++.+|||+|+|
T Consensus 302 ~~~~~~~~V~I~IP~P~-~~~~~~~~~~~G~~~y~~~~~~l~W~I~~i~~~~~~~l~~~~~l~~~~~~~~~~~~pi~v~F 380 (423)
T 1w63_M 302 KRRSTANNVEIHIPVPN-DADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKF 380 (423)
T ss_dssp CTTSEEESCEEEEECCT-TCCCCEEEESSSEEEEETGGGEEEEECSEEETTCEEEEEEEEEC----------CCCEEEEB
T ss_pred CCcceeeEEEEEEeCCC-CcccceEEecCccEEEecCCCEEEEEeCcCCCCCcEEEEEEEEccCCCcccccCCCcEEEEE
Confidence 235899999999988 6788999999999999999999999999999887 788888888653 456799999999
Q ss_pred eec-eeccccC
Q psy16332 350 SCN-QSYANIK 359 (359)
Q Consensus 350 ~s~-~~~~~~~ 359 (359)
+.. .++++++
T Consensus 381 ~i~~~t~Sgl~ 391 (423)
T 1w63_M 381 EIPYFTTSGIQ 391 (423)
T ss_dssp CCSSCCTTCCC
T ss_pred EECCEeCCCCE
Confidence 966 6777653
No 15
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.21 E-value=7.1e-11 Score=102.59 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=74.5
Q ss_pred ceeeeeceeEEEeecCCceeEEeeccc-cc-c---hhHHHHHHhhhhhhhcCCCccceEEeCCEEEEEEEcCCEEEEEEe
Q psy16332 35 ESVNLAQEATKIKLKNIKIAIVSRQFV-EM-T---RARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLIT 109 (359)
Q Consensus 35 ~~~~~~~s~~~i~~~~Gk~~LisRq~r-di-~---r~~ie~~l~~F~~li~~~~~~t~ve~~~vryvY~~~~~lYl~~iT 109 (359)
|+-..|++|+.|+|++|| ++++|.|+ ++ + |.++| ..+.+++.. ...|+++.++..|+|.++.+||+++++
T Consensus 7 ~~sl~mI~~ililn~~Gk-~~lsK~Y~~~~~~~~~~~~~e---~~i~~~~~r-~~~~i~~~~~~~~vy~~~~~Lyfv~~~ 81 (153)
T 3tjz_C 7 EPSLYTVKAILILDNDGD-RLFAKYYDDTYPSVKEQKAFE---KNIFNKTHR-TDSEIALLEGLTVVYKSSIDLYFYVIG 81 (153)
T ss_dssp CCCSBCEEEEEEECTTSC-EEEEEECSSSSCSHHHHHHHH---HHHHHHHSS-CCCCEEEETTEEEEEEECSSCEEEEEE
T ss_pred cccHHHheEEEEECCCCC-EEEEEeCCCCCCCHHHHHHHH---HHHHHHHhC-CCCCEEEECCEEEEEEEECCEEEEEEE
Confidence 445568899999999999 99999999 54 4 34344 334455543 336999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHhhhc
Q psy16332 110 TKTSNILEDLETLRLFSRV 128 (359)
Q Consensus 110 ~~nsNi~~~l~~L~~l~~v 128 (359)
..|.|.+..+++||+++++
T Consensus 82 ~~~eNel~ile~L~~~ve~ 100 (153)
T 3tjz_C 82 SSYENELMLMTVLNCLFDS 100 (153)
T ss_dssp ETTSCHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHH
Confidence 9999999999999999998
No 16
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.026 Score=54.14 Aligned_cols=114 Identities=10% Similarity=0.201 Sum_probs=73.4
Q ss_pred CCeeeEEEeecCCCCcccceEEEEeeCCCCCCceEEEEEEEEecC------ccceeeeEEEeeCCCCCCCce-eeCCceE
Q psy16332 157 NDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEHE------EKELNQVTISIPLPLHCTPNV-TECDGDY 229 (359)
Q Consensus 157 ~~~gvlkWR~~~~~e~~lPlsV~~w~s~~~~~~~~v~iEye~~~~------~~~l~dV~i~IPlp~~~~~~v-~~~dG~~ 229 (359)
..++++||++.. ...||.+..--.... ..+++.|.|.++.. ...|+||.|.+|+..+....+ ..+.|.|
T Consensus 152 ktv~~lKYqVs~---~~~PL~l~p~WK~E~-~qtsliI~Yk~NP~~~~~~~~~~L~Nv~~~V~ldGa~ats~qskP~gtw 227 (328)
T 3g9h_A 152 RTLGAIKYSIKE---PIAPIVIHPVWRFES-HQASVVLTVKMSPSLPDEISQIVIEDLVVFVNIDGANATSALSKPQGSF 227 (328)
T ss_dssp CEEEEEEEEEES---CCCSEEEEEEEEECS-SEEEEEEEEEECTTSCTTCCEEEEEEEEEEEEBCSSCEEEEEESSSCCB
T ss_pred cceeeEEEEECC---CCCCeEEEeeeecCC-CeeEEEEEEEECCCCcCcCCCceeeeEEEEEEeCCCceeEEEecCCcee
Confidence 458899999964 578997765444433 48899999998653 247999999999965322222 3457876
Q ss_pred EEeCCCCeEEEEEee-ec--CCC--ceeEEEEEeecCCCCCcccEEEEEEec
Q psy16332 230 NYDARKNTLTWSLAL-ID--SSN--KSGALEFSAPSASQSDFFPLQVSFSCN 276 (359)
Q Consensus 230 ~~d~~~~~L~W~I~~-id--~~~--~sgsleFsv~~~d~d~~fPI~V~F~~~ 276 (359)
. .+.+-+.|+++. +. .++ .....-|.+.......--.|.+.|++.
T Consensus 228 n--~e~~ri~Wkl~e~l~l~~~g~~gkLiARf~~~g~~~~~~~gV~akF~~~ 277 (328)
T 3g9h_A 228 S--KEKKRITWRFKEPVVLTRNGEGQRLIARFITDGLAHESAKGVITKFTIS 277 (328)
T ss_dssp C--SSSCEEEEECSSCEEEETTCCCEEEEEEEEESSCCCBCSSCEEEEEEEC
T ss_pred c--cccCEEEEECCCCcccccCCCCCeEEEEEEcCCCCCCCCCcEEEEEEEe
Confidence 4 788999999977 42 212 233334444221111222299999885
No 17
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=89.56 E-value=2.1 Score=36.05 Aligned_cols=79 Identities=11% Similarity=0.109 Sum_probs=60.4
Q ss_pred eeEEEeecCCceeEEeecccccchhHHH-HHHhhhhhhhcC------CCccceE-EeCCEEEEEEEcCCEEEEEEecCCc
Q psy16332 42 EATKIKLKNIKIAIVSRQFVEMTRARIE-GLLAAFPKLMSS------GKQHTFV-ETDSVRYVYQPLEKLYMLLITTKTS 113 (359)
Q Consensus 42 s~~~i~~~~Gk~~LisRq~rdi~r~~ie-~~l~~F~~li~~------~~~~t~v-e~~~vryvY~~~~~lYl~~iT~~ns 113 (359)
-||.|+|+.|- ||+..-.-+.+..+.+ ++|+.|..-..+ |+..+++ ..++...|-.....||+-.++.+++
T Consensus 39 ~aI~ItDrDGV-pi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~~a 117 (143)
T 3cpt_A 39 HAIVVSDRDGV-PVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSSA 117 (143)
T ss_dssp EEEEEECTTSC-EEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETTS
T ss_pred EEEEEECCCCc-EEEEecCCCCchhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecCCC
Confidence 35599999999 9999887766655554 789999887765 5555544 4477677776788999999999999
Q ss_pred cHHHHHHH
Q psy16332 114 NILEDLET 121 (359)
Q Consensus 114 Ni~~~l~~ 121 (359)
|+=..+..
T Consensus 118 NtG~Il~L 125 (143)
T 3cpt_A 118 NTGLIVSL 125 (143)
T ss_dssp CHHHHHHH
T ss_pred CchhHhhh
Confidence 98766654
No 18
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=80.80 E-value=40 Score=32.09 Aligned_cols=168 Identities=8% Similarity=0.085 Sum_probs=90.0
Q ss_pred EEEEeeCCCCCCceEEEEEEEEecC---c---cceeeeEEEeeCCC--C---CCCcee--eCCceEEEeCCC------Ce
Q psy16332 177 SINCWPSDNGSGGCDVNIEYELEHE---E---KELNQVTISIPLPL--H---CTPNVT--ECDGDYNYDARK------NT 237 (359)
Q Consensus 177 sV~~w~s~~~~~~~~v~iEye~~~~---~---~~l~dV~i~IPlp~--~---~~~~v~--~~dG~~~~d~~~------~~ 237 (359)
+||+|.....-.+|.|++|+.++-. + -.-..+.|.|.-.. + -++.+. ...|+|.++... +.
T Consensus 77 ~VNA~Fkgg~~tk~~v~GEiaLsy~~~~~s~~p~p~~l~fRL~N~~~Lekv~pN~~fv~~~~~~eF~vn~~~L~sktv~~ 156 (328)
T 3g9h_A 77 VLNASFKDGMLQNSQLIGEIALNYLPNSVMNSPLPIGINLRINNGAKFEKVILNQAFIERVAPEEFKVNPSFIDSRTLGA 156 (328)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEEECCSSSCCCCCSEEEEEEETGGGEEEEEECTTTEEEEETTEEEECTTTTBTCEEEE
T ss_pred EEEEEEECCcEEEEEEEEEEEEecCCCccccCCCCccEEEEecCcchhheeeCCHHHhccCCCCCEEEchHHhcccceee
Confidence 7888887654337888888887421 0 00111222221100 0 012221 125888876532 23
Q ss_pred EEEEEeeecCCCceeEEEEE-eecCCCCCcccEEEEEEec---------cceeeeEEEEeecccccCCCceeee--cceE
Q psy16332 238 LTWSLALIDSSNKSGALEFS-APSASQSDFFPLQVSFSCN---------QSYANIKIFIEKLFLLHCTPNVTEC--DGDY 305 (359)
Q Consensus 238 L~W~I~~id~~~~sgsleFs-v~~~d~d~~fPI~V~F~~~---------~s~s~v~V~iP~~~~~~~~P~V~~~--dG~y 305 (359)
|++.+. ....+|.+. +|- -+...--+.++|+.+ .++.||.|..|... +..+-..+ .|.|
T Consensus 157 lKYqVs-----~~~~PL~l~p~WK-~E~~qtsliI~Yk~NP~~~~~~~~~~L~Nv~~~V~ldG---a~ats~qskP~gtw 227 (328)
T 3g9h_A 157 IKYSIK-----EPIAPIVIHPVWR-FESHQASVVLTVKMSPSLPDEISQIVIEDLVVFVNIDG---ANATSALSKPQGSF 227 (328)
T ss_dssp EEEEEE-----SCCCSEEEEEEEE-ECSSEEEEEEEEEECTTSCTTCCEEEEEEEEEEEEBCS---SCEEEEEESSSCCB
T ss_pred EEEEEC-----CCCCCeEEEeeee-cCCCeeEEEEEEEECCCCcCcCCCceeeeEEEEEEeCC---CceeEEEecCCcee
Confidence 555552 245666664 342 223455677777753 36889999888532 11111111 3666
Q ss_pred EEeCCCCEEEEEEee-Ec--CCC--CeEEEEEEccCCCCCCccceEEEEeeceec
Q psy16332 306 NYDARKNTLTWSLAL-ID--SSN--KSGALEFSAPSASQSDFFPLQVSFSCNQSY 355 (359)
Q Consensus 306 ~y~~~~~~l~W~I~~-i~--~~~--~sgs~eF~~~~~~~~~fFPi~V~F~s~~~~ 355 (359)
..+++.+.|+|+. +. .++ -.-.+-|.+.+.....--.|+++|+...+.
T Consensus 228 --n~e~~ri~Wkl~e~l~l~~~g~~gkLiARf~~~g~~~~~~~gV~akF~~~~~~ 280 (328)
T 3g9h_A 228 --SKEKKRITWRFKEPVVLTRNGEGQRLIARFITDGLAHESAKGVITKFTISETD 280 (328)
T ss_dssp --CSSSCEEEEECSSCEEEETTCCCEEEEEEEEESSCCCBCSSCEEEEEEECCCS
T ss_pred --ccccCEEEEECCCCcccccCCCCCeEEEEEEcCCCCCCCCCcEEEEEEEeCCC
Confidence 4788999999988 43 111 344455777442222222399999987664
No 19
>2zf9_A SCAE cell-surface anchored scaffoldin protein; dockerin-binding module, anchoring module, alpha helix, beta structural protein; HET: MSE; 1.95A {Ruminococcus flavefaciens}
Probab=79.16 E-value=1.3 Score=38.41 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=27.4
Q ss_pred CeEEEEEEccC-CCCCCccceEEEEeeceeccc
Q psy16332 326 KSGALEFSAPS-ASQSDFFPLQVSFSCNQSYAN 357 (359)
Q Consensus 326 ~sgs~eF~~~~-~~~~~fFPi~V~F~s~~~~~~ 357 (359)
..++++|++|+ ..+.+.|||+|.++++.+-|+
T Consensus 125 vLwtf~l~VPaDAqpGd~yPI~vaY~~~~~~~D 157 (194)
T 2zf9_A 125 VLWSFVLQVPADAQPGDKYDVQVAYQSRTTNED 157 (194)
T ss_dssp EEEEEEEECCTTCCTTCEEEEEEEECCCSSSCC
T ss_pred eEEEEEEeccccCCCccccceeeEEecCCcccc
Confidence 66788999998 667889999999999887765
No 20
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=69.76 E-value=15 Score=30.36 Aligned_cols=73 Identities=10% Similarity=0.089 Sum_probs=42.2
Q ss_pred cee-eeeceeEEEeecCCceeEEeecccccch------hH------HHHHHhhhhhhhcCCCccceEEeCC----EEEEE
Q psy16332 35 ESV-NLAQEATKIKLKNIKIAIVSRQFVEMTR------AR------IEGLLAAFPKLMSSGKQHTFVETDS----VRYVY 97 (359)
Q Consensus 35 ~~~-~~~~s~~~i~~~~Gk~~LisRq~rdi~r------~~------ie~~l~~F~~li~~~~~~t~ve~~~----vryvY 97 (359)
||+ +.+ ++|.+++|. +|-.|.|-.-.+ .+ +-++|+.+-++......--..+.+. --|.|
T Consensus 2 ~M~~i~~---~~Ii~~~~~-ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~ 77 (142)
T 2j3w_A 2 EMSGSFY---FVIVGHHDN-PVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAF 77 (142)
T ss_dssp CCCCCEE---EEEECTTSC-EEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEE
T ss_pred ccceEEE---EEEEeCCCC-EEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEE
Confidence 566 444 599999999 999999974321 11 1122222222222211111223332 25889
Q ss_pred EEcCCEEEEEEecC
Q psy16332 98 QPLEKLYMLLITTK 111 (359)
Q Consensus 98 ~~~~~lYl~~iT~~ 111 (359)
+...++=++++|..
T Consensus 78 ~T~tg~Kfvl~~d~ 91 (142)
T 2j3w_A 78 VTAGHMRFIMLHDV 91 (142)
T ss_dssp ECTTCCEEEEEESS
T ss_pred EcCCCcEEEEEeCC
Confidence 99999988899875
No 21
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=47.94 E-value=1.3e+02 Score=26.11 Aligned_cols=95 Identities=12% Similarity=0.104 Sum_probs=62.5
Q ss_pred EEEeecCCceeEEeecccccc------hhHHHHHHhhhhhhhcCC---CccceEEeCCEEEE-EEEcCCEEEEEEecCCc
Q psy16332 44 TKIKLKNIKIAIVSRQFVEMT------RARIEGLLAAFPKLMSSG---KQHTFVETDSVRYV-YQPLEKLYMLLITTKTS 113 (359)
Q Consensus 44 ~~i~~~~Gk~~LisRq~rdi~------r~~ie~~l~~F~~li~~~---~~~t~ve~~~vryv-Y~~~~~lYl~~iT~~ns 113 (359)
+.|+.+.|..+++--.-.|++ |.-+-+++.-+-+.+.+. .+.-.++.++..|- |...+++..+++|.+.-
T Consensus 7 ~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~r~s~~~~~y~fH~y~~~~gl~yl~itd~~y 86 (199)
T 3kyq_A 7 LSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVVIADSEY 86 (199)
T ss_dssp EEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTEEEEEECSSEEEEEEECTTSEEEEEEEETTS
T ss_pred EEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCCeEEEEeCCEEEEEEEecCCEEEEEEECCCC
Confidence 366665544366655555665 676776664444455441 23344566776665 99999999999999998
Q ss_pred cHHHHHHHHHHhhhccCcccchhhh
Q psy16332 114 NILEDLETLRLFSRVTHPNVDKELF 138 (359)
Q Consensus 114 Ni~~~l~~L~~l~~vtHP~VdK~~f 138 (359)
---.-+.+|..+.+-|........|
T Consensus 87 p~r~AF~fL~ei~~eF~~~~~~~~~ 111 (199)
T 3kyq_A 87 PSRVAFTLLEKVLDEFSKQVDRIDW 111 (199)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCGGGS
T ss_pred CHHHHHHHHHHHHHHHHHhccchhh
Confidence 8888899999887765444433333
No 22
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=31.72 E-value=2.3e+02 Score=23.73 Aligned_cols=81 Identities=7% Similarity=0.010 Sum_probs=54.8
Q ss_pred EEeecCCceeEEeec---cc--ccchhHHHHHHhhhhhhhcC-------CC-ccceEEeCCEEEEEEEcC-CEEEEEEec
Q psy16332 45 KIKLKNIKIAIVSRQ---FV--EMTRARIEGLLAAFPKLMSS-------GK-QHTFVETDSVRYVYQPLE-KLYMLLITT 110 (359)
Q Consensus 45 ~i~~~~Gk~~LisRq---~r--di~r~~ie~~l~~F~~li~~-------~~-~~t~ve~~~vryvY~~~~-~lYl~~iT~ 110 (359)
.++++.|- ++=+.+ .. + .-+++-.+.+....+... |. +..++|.++-..+-.+.+ +.+|++++.
T Consensus 33 vlvs~DGl-~ia~~~~~~~~~~~-d~d~lAA~~A~~~sl~~~~a~~l~~G~~~q~~ve~~~g~l~v~~~g~~a~L~Vla~ 110 (163)
T 1j3w_A 33 LLIDRKGF-VLAHKEALWAPKPP-PLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLVLVFD 110 (163)
T ss_dssp EEEETTSC-EEEEEECTTSCCCS-CHHHHHHHHHHHHHHTHHHHHHTTCSSCSEEEEECSSCEEEEEESSTTEEEEEEEC
T ss_pred EEEcCCCC-EEEeecccccCCCC-cHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCcEEEEEEeCCCeEEEEEeC
Confidence 89999997 666633 33 4 555555555555544432 33 568899887555555555 599999999
Q ss_pred CCccHHHHHHHHHHhhh
Q psy16332 111 KTSNILEDLETLRLFSR 127 (359)
Q Consensus 111 ~nsNi~~~l~~L~~l~~ 127 (359)
+++|+=...--++++++
T Consensus 111 ~~a~lG~v~~~m~~~v~ 127 (163)
T 1j3w_A 111 ETAPLGKVKLHGKRASE 127 (163)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHH
Confidence 99998877777776664
No 23
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=30.78 E-value=2.1e+02 Score=24.35 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=37.4
Q ss_pred ceEEeCCEEEEEEEcCCEEEEEEecCCccHHHHHHHHHHhhhc
Q psy16332 86 TFVETDSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRV 128 (359)
Q Consensus 86 t~ve~~~vryvY~~~~~lYl~~iT~~nsNi~~~l~~L~~l~~v 128 (359)
-.++.++..|-|...+++-.+++|.+.----..+.||..+.+-
T Consensus 44 ~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~~e 86 (189)
T 4b93_A 44 LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKR 86 (189)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHHHH
Confidence 4467899999999999999999999998888889999888765
No 24
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=27.71 E-value=2.3e+02 Score=22.52 Aligned_cols=82 Identities=4% Similarity=-0.014 Sum_probs=60.4
Q ss_pred EEeecCCceeEEeecccccchhHHHHHHhhhhhhhcC--------CC-ccceEEeCCEEEEEEEcCCEEEEEEecCCccH
Q psy16332 45 KIKLKNIKIAIVSRQFVEMTRARIEGLLAAFPKLMSS--------GK-QHTFVETDSVRYVYQPLEKLYMLLITTKTSNI 115 (359)
Q Consensus 45 ~i~~~~Gk~~LisRq~rdi~r~~ie~~l~~F~~li~~--------~~-~~t~ve~~~vryvY~~~~~lYl~~iT~~nsNi 115 (359)
.++++.|- .+=+-..-+..-+++-.+.+.+..+... |. +.+++|.++=...-.+.++.+|+++++++.|.
T Consensus 23 ~lvs~DGl-lia~s~~~~~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~~G~l~i~~a~~a~L~Vla~~~a~l 101 (125)
T 1vet_B 23 LLLNNEGS-LLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVANLLLCMYAKETVGF 101 (125)
T ss_dssp EEECTTCC-EEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEEEEEEEETTEEEEEEECTTSCH
T ss_pred EEECCCCC-eEEecCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCEEEEEEcCCeEEEEEeCCCCCh
Confidence 88999996 5555444566777777777777665432 22 55899998877666777899999999999998
Q ss_pred HHHHHHHHHhhh
Q psy16332 116 LEDLETLRLFSR 127 (359)
Q Consensus 116 ~~~l~~L~~l~~ 127 (359)
=..---++++++
T Consensus 102 Glv~~~m~~lv~ 113 (125)
T 1vet_B 102 GMLKAKAQALVQ 113 (125)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766666653
No 25
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=27.54 E-value=22 Score=29.14 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=26.8
Q ss_pred cCChhhHhhhhhhhhhhHHHHHhhhcccee
Q psy16332 8 FMDENEVTDNAFSLIFAFDEIVALGYRESV 37 (359)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (359)
.++|.+|.+|...+...+||++..|+.+..
T Consensus 97 ~v~E~~I~~Nf~~vy~lLDE~id~G~~~et 126 (142)
T 2vgl_S 97 NVCELDLVFNFYKVYTVVDEMFLAGEIRET 126 (142)
T ss_dssp SCCHHHHHHTHHHHHHHHHHHEETTEECCC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCEEEEc
Confidence 489999999999999999999999987644
No 26
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=27.46 E-value=2.8e+02 Score=23.36 Aligned_cols=44 Identities=11% Similarity=0.060 Sum_probs=37.3
Q ss_pred ceEEeCCEEEEEEEcCCEEEEEEecCCccHHHHHHHHHHhhhcc
Q psy16332 86 TFVETDSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVT 129 (359)
Q Consensus 86 t~ve~~~vryvY~~~~~lYl~~iT~~nsNi~~~l~~L~~l~~vt 129 (359)
-.++.++..|-|.--++|-.++|+.+.---...+.||..+.+-|
T Consensus 86 ~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~eF 129 (169)
T 2vx8_A 86 LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRF 129 (169)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred eEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHHHHH
Confidence 44677888999998899999999999988888999999887753
No 27
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=23.69 E-value=2.7e+02 Score=22.00 Aligned_cols=82 Identities=6% Similarity=0.078 Sum_probs=53.3
Q ss_pred EEeecCCceeEEeecccc-cchhHHHHHHhhhhhhhcC-------CC-ccceEEeCCEEEEEEEcC-CEEEEEEecCCcc
Q psy16332 45 KIKLKNIKIAIVSRQFVE-MTRARIEGLLAAFPKLMSS-------GK-QHTFVETDSVRYVYQPLE-KLYMLLITTKTSN 114 (359)
Q Consensus 45 ~i~~~~Gk~~LisRq~rd-i~r~~ie~~l~~F~~li~~-------~~-~~t~ve~~~vryvY~~~~-~lYl~~iT~~nsN 114 (359)
.+++..|- ++-+..=.+ ...+++-.+.+.+..+-.. |. +..++|.++=..+-.+.. +.+|++++..+.|
T Consensus 23 vlvs~DGl-~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~~~~G~~~qv~ve~~~G~l~v~~ag~~a~L~vla~~~a~ 101 (126)
T 3leq_A 23 VVLSEDGL-VVSKSTGFLRDDAERLAATASGLMSLSKGVSMDFRRGPVRQALIEMGKGYLILTAAGPGAHLVVLTRQGAD 101 (126)
T ss_dssp EEEETTSC-EEEECTTSCHHHHHHHHHHHHHHHHC-------------CEEEEECSSCEEEEEESSTTEEEEEEECTTCC
T ss_pred EEEcCCCc-EEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEeCCCEEEEEEeCCCcEEEEEeCCCCC
Confidence 78889997 665533223 2345555555566655542 22 558888877555555555 6999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy16332 115 ILEDLETLRLFSR 127 (359)
Q Consensus 115 i~~~l~~L~~l~~ 127 (359)
+=...--++++++
T Consensus 102 lG~v~~em~~~v~ 114 (126)
T 3leq_A 102 VGVVAYQMNMLVK 114 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9888888887764
No 28
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=23.14 E-value=3e+02 Score=22.27 Aligned_cols=90 Identities=14% Similarity=0.073 Sum_probs=56.3
Q ss_pred eeeeeceeEEEeecC-CceeEEeecccccc------hhHHHHHHhhhhhhhcC---CCccceEEeCCEEEEEE-EcCCEE
Q psy16332 36 SVNLAQEATKIKLKN-IKIAIVSRQFVEMT------RARIEGLLAAFPKLMSS---GKQHTFVETDSVRYVYQ-PLEKLY 104 (359)
Q Consensus 36 ~~~~~~s~~~i~~~~-Gk~~LisRq~rdi~------r~~ie~~l~~F~~li~~---~~~~t~ve~~~vryvY~-~~~~lY 104 (359)
|-.+++ .|+-.. ++ +++=-.+.|.+ |+-+-..+..+-+.+.+ ..+.-.++.++..+-|. ..+++-
T Consensus 5 Mkl~~~---~v~r~~~~~-~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~sv~~~~y~fH~~~~~~gl~ 80 (144)
T 3bw6_A 5 MRIYYI---GVFRSGGEK-ALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGIC 80 (144)
T ss_dssp CCEEEE---EEEECCSSS-CEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEEEEEETTEEEEEEECTTSEE
T ss_pred EEEEEE---EEEecCCCC-CeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceEEEEeCCEEEEEEEecCCEE
Confidence 444454 555443 34 56555666666 44444444344444432 12333456677666666 778999
Q ss_pred EEEEecCCccHHHHHHHHHHhhhcc
Q psy16332 105 MLLITTKTSNILEDLETLRLFSRVT 129 (359)
Q Consensus 105 l~~iT~~nsNi~~~l~~L~~l~~vt 129 (359)
-++||.+.----.-+.+|..+.+=|
T Consensus 81 ~l~i~D~~yp~rvAF~~L~~i~~eF 105 (144)
T 3bw6_A 81 GVLITDKEYPVRPAYTLLNKILDEY 105 (144)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCChhHHHHHHHHHHHHH
Confidence 9999999988888899998877763
Done!